BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 024829
         (262 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1ZQ1|A Chain A, Structure Of Gatde Trna-Dependent Amidotransferase From
           Pyrococcus Abyssi
 pdb|1ZQ1|B Chain B, Structure Of Gatde Trna-Dependent Amidotransferase From
           Pyrococcus Abyssi
          Length = 438

 Score = 30.4 bits (67), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 13/58 (22%), Positives = 28/58 (48%)

Query: 37  CSAYNQAVLRNPYSSAQNGFQCITRKRVGFSWPNFDLKLNRRCYDIKFSRNVVVRSQL 94
           C A+    +R  ++S ++ F+ I    +   WPN +++  R+ Y  +    V V  ++
Sbjct: 246 CLAHRGTKVRKXHTSRRDAFRSINDVPIAKIWPNGEIEFLRKDYRKRSDEEVEVDDKI 303


>pdb|1JQO|A Chain A, Crystal Structure Of C4-Form Phosphoenolpyruvate
           Carboxylase From Maize
 pdb|1JQO|B Chain B, Crystal Structure Of C4-Form Phosphoenolpyruvate
           Carboxylase From Maize
          Length = 970

 Score = 29.6 bits (65), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 5/61 (8%)

Query: 14  HLRSRKSSTHSCLSRLCPYKGL--GCSAYNQA-VLRNPYSSAQNGFQCITRKRVGFSWPN 70
            LR +   T   L ++  +K +  G     Q  VLRNPY +  N FQ  T KR+    PN
Sbjct: 859 QLRDKYVETQQLLLQIAGHKDILEGDPFLKQGLVLRNPYITTLNVFQAYTLKRI--RDPN 916

Query: 71  F 71
           F
Sbjct: 917 F 917


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.327    0.140    0.430 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,176,125
Number of Sequences: 62578
Number of extensions: 264979
Number of successful extensions: 587
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 585
Number of HSP's gapped (non-prelim): 2
length of query: 262
length of database: 14,973,337
effective HSP length: 97
effective length of query: 165
effective length of database: 8,903,271
effective search space: 1469039715
effective search space used: 1469039715
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 50 (23.9 bits)