Query 024829
Match_columns 262
No_of_seqs 184 out of 1856
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 15:07:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024829.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024829hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1iuq_A Glycerol-3-phosphate ac 99.0 6.9E-11 2.4E-15 110.5 1.2 103 155-259 96-229 (367)
2 1ic9_A TH10AOX; three stranded 32.5 12 0.00043 21.4 0.5 15 30-44 10-24 (29)
3 1yk0_E Atrial natriuretic fact 15.3 84 0.0029 18.0 1.7 18 27-44 8-25 (26)
4 2ltm_A NFU1 iron-sulfur cluste 14.2 56 0.0019 24.9 0.0 44 214-257 53-104 (107)
5 1r9i_A MU-conotoxin PIIIA; cys 10.2 92 0.0031 17.7 0.8 11 21-31 7-17 (26)
6 1nrz_A PTS system, sorbose-spe 6.9 8.2E+02 0.028 19.4 5.7 57 204-260 25-83 (164)
7 3ixz_B Potassium-transporting 6.7 4.7E+02 0.016 23.1 4.3 20 110-129 33-52 (290)
8 1vsq_C Mannose-specific phosph 6.3 9.2E+02 0.031 19.1 5.7 57 204-260 28-86 (165)
9 1bhu_A SMPI, metalloproteinase 6.3 2.3E+02 0.0078 20.4 1.6 16 27-42 7-22 (102)
10 3cdw_H Protein 3B, VPG; RNA-de 6.2 1.9E+02 0.0065 16.5 0.9 17 31-47 2-18 (26)
No 1
>1iuq_A Glycerol-3-phosphate acyltransferase; open twisted alpha/beta, four helix bundle; 1.55A {Cucurbita moschata} SCOP: c.112.1.1 PDB: 1k30_A
Probab=98.99 E-value=6.9e-11 Score=110.47 Aligned_cols=103 Identities=15% Similarity=0.079 Sum_probs=70.0
Q ss_pred HHHHHHHHHhccCceEEEEEe-------eecCCCCCCCeEEEecCCchhhHHHHHHh-CC-------ceEEEEcchhhhc
Q 024829 155 FIAKLWATLTVSPFLKLEIEG-------LENLPSSDTPAVYVSNHQSFLDIYTLLTL-GK-------SFKFISKTGIFLF 219 (262)
Q Consensus 155 ~i~r~w~~~~~~~g~rv~V~G-------~enlp~~~~p~IiVsNHqS~lDi~lL~~l-~~-------~~~fVaK~EL~~i 219 (262)
.+.+.|.+.++... +.+|.| .|++++ ++++|+++||||.+|++++..+ .+ ++.||+|+|+.+.
T Consensus 96 ~~~~~~ir~li~~~-~s~V~G~e~~~~~~E~l~~-~~~vIfisNHQS~~D~~vi~~~l~~~~~~l~~~~~fVAk~eL~~~ 173 (367)
T 1iuq_A 96 IFGQNYIRPLIDFG-NSFVGNLSLFKDIEEKLQQ-GHNVVLISNHQTEADPAIISLLLEKTNPYIAENTIFVAGDRVLAD 173 (367)
T ss_dssp HHHHHHHGGGBCGG-GCEEECHHHHHHHHHHHHT-TCEEEEEECCCCTTHHHHHHHHHTTTCHHHHHHCEEEECTHHHHC
T ss_pred HHHHHHHHHHHhhc-CCEeecchhhhhHHhhccC-CCcEEEEECCccchhHHHHHHHHhhcccccccceEEEeehhhhcC
Confidence 34555666555432 445888 777775 8999999999999999998754 33 7999999999987
Q ss_pred cHHHHHH--HHcCcEEe----e------CCChHHHHH---HHHHHhhC-CCeEEEE
Q 024829 220 PVIGWAM--SMMGVIPL----K------RMDSRSQLA---QVSALHPL-GFEIFIG 259 (262)
Q Consensus 220 P~~G~~~--~~~g~IpV----d------R~~~~~alk---~i~~~l~~-G~sIvI~ 259 (262)
|+...+. +..++|+. + |++.+++++ ++.+.+++ |.+|+|+
T Consensus 174 Pl~~Pfs~g~~l~cI~~kk~id~~p~l~r~~~r~n~ksl~~~~~~Lk~GG~sI~IF 229 (367)
T 1iuq_A 174 PLCKPFSIGRNLICVYSKKHMFDIPELTETKRKANTRSLKEMALLLRGGSQLIWIA 229 (367)
T ss_dssp TTTHHHHHTSEEEECCCGGGTTSSGGGHHHHHHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred ccccchhhhhheeeEEecccCCCcchhhhhhhHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 7764421 22345664 4 555445544 44556666 6677763
No 2
>1ic9_A TH10AOX; three stranded antiparallel beta-sheet mini-protein motif de novo protein design; HET: DPR DAL; NMR {Synthetic} SCOP: k.26.1.1 PDB: 1ico_A* 1icl_A*
Probab=32.54 E-value=12 Score=21.42 Aligned_cols=15 Identities=27% Similarity=0.820 Sum_probs=11.9
Q ss_pred CCCCCCCCCcccccc
Q 024829 30 CPYKGLGCSAYNQAV 44 (262)
Q Consensus 30 ~~~~~~~~~~~~~~~ 44 (262)
-+++|-||++.+.++
T Consensus 10 ytfrgpgcptlkpai 24 (29)
T 1ic9_A 10 YTFRGPGCPTLKPAI 24 (29)
T ss_dssp EEEECSCCCCCCTTC
T ss_pred eeecCCCCCccccee
Confidence 367899999988664
No 3
>1yk0_E Atrial natriuretic factor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, hormone-growth factor receptor complex; HET: NAG; 2.40A {Homo sapiens} PDB: 1t34_H*
Probab=15.28 E-value=84 Score=17.99 Aligned_cols=18 Identities=28% Similarity=0.737 Sum_probs=10.7
Q ss_pred ccCCCCCCCCCCcccccc
Q 024829 27 SRLCPYKGLGCSAYNQAV 44 (262)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~ 44 (262)
.|.....||||...+-|.
T Consensus 8 DRIgs~SglGC~~~r~p~ 25 (26)
T 1yk0_E 8 DRIGAQSGLGCNSFXXXX 25 (26)
T ss_dssp CCCSSSCCSCCCCC----
T ss_pred cccccccCCCCCCccccC
Confidence 455667899998777663
No 4
>2ltm_A NFU1 iron-sulfur cluster scaffold homolog, mitoch; structural genomics, northeast structural genomics consortiu PSI-biology; NMR {Homo sapiens}
Probab=14.21 E-value=56 Score=24.90 Aligned_cols=44 Identities=9% Similarity=0.116 Sum_probs=31.6
Q ss_pred chhhhccHHHHHHHHcCcEEeeC-CChH-------HHHHHHHHHhhCCCeEE
Q 024829 214 TGIFLFPVIGWAMSMMGVIPLKR-MDSR-------SQLAQVSALHPLGFEIF 257 (262)
Q Consensus 214 ~EL~~iP~~G~~~~~~g~IpVdR-~~~~-------~alk~i~~~l~~G~sIv 257 (262)
++|+.+|.+.-++.-.++|-|.| .+.. +..+.|.+.+.+|..++
T Consensus 53 ~~LF~i~gVk~Vf~g~dFITVtK~~~~~dW~~ikp~V~~~I~~~~~sG~pvv 104 (107)
T 2ltm_A 53 RQLFRIEGVKSVFFGPDSITVTKENEELDWNLLKPDIYATIMDFFASGLPLV 104 (107)
Confidence 46778999999999999999999 4322 23445556667777654
No 5
>1r9i_A MU-conotoxin PIIIA; cysteine knot; HET: PCA HYP CY3; NMR {Conus purpurascens} SCOP: j.30.1.1
Probab=10.21 E-value=92 Score=17.66 Aligned_cols=11 Identities=45% Similarity=0.776 Sum_probs=8.8
Q ss_pred CcccccccCCC
Q 024829 21 STHSCLSRLCP 31 (262)
Q Consensus 21 ~~~~~~~~~~~ 31 (262)
-|-+|.||.|.
T Consensus 7 ~Pk~CksR~Ck 17 (26)
T 1r9i_A 7 FPKSCRSRQCK 17 (26)
T ss_dssp STTGGGSTTTT
T ss_pred CCCcccccccc
Confidence 46789999984
No 6
>1nrz_A PTS system, sorbose-specific IIB component; beta sheet core, flanking helices, right handed beta-alpha-B crossover, transferase; 1.75A {Klebsiella pneumoniae} SCOP: c.38.1.1
Probab=6.88 E-value=8.2e+02 Score=19.39 Aligned_cols=57 Identities=11% Similarity=0.011 Sum_probs=37.8
Q ss_pred hCCceEEEEcchhhhccHHHHHHHHcC--cEEeeCCChHHHHHHHHHHhhCCCeEEEEE
Q 024829 204 LGKSFKFISKTGIFLFPVIGWAMSMMG--VIPLKRMDSRSQLAQVSALHPLGFEIFIGF 260 (262)
Q Consensus 204 l~~~~~fVaK~EL~~iP~~G~~~~~~g--~IpVdR~~~~~alk~i~~~l~~G~sIvI~f 260 (262)
+.-...+|+.+|+.+-|+...++++.- .+-+.=-+-.++++.+.+...++..++|+|
T Consensus 25 ~~~~~IiVvnD~vA~D~~~k~~lk~a~P~gvk~~i~sve~ai~~~~~~~~~~~~v~ll~ 83 (164)
T 1nrz_A 25 ANAQRIIICNDDVFNDEVRRTLLRQAAPPGMKVNVVSLEKAVAVYHNPQYQDETVFYLF 83 (164)
T ss_dssp HTCSEEEEECHHHHTCHHHHHHHHHTCCTTCEEEEECHHHHHHHHTCGGGTTCEEEEEE
T ss_pred cCCCEEEEeCccccCCHHHHHHHHhcCCCCCeEEEEEHHHHHHHHhcccCCCceEEEEE
Confidence 345678888999999998888888753 233322334556666665545677777765
No 7
>3ixz_B Potassium-transporting ATPase subunit beta; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_B 2xzb_B
Probab=6.66 E-value=4.7e+02 Score=23.07 Aligned_cols=20 Identities=25% Similarity=0.132 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 024829 110 KLGSKVRGICFYAVTAVVAI 129 (262)
Q Consensus 110 ~L~s~lR~ilf~l~~~l~~~ 129 (262)
|..++...++|++++....+
T Consensus 33 T~~sW~~IllFYliFY~~La 52 (290)
T 3ixz_B 33 TLSRWVWISLYYVAFYVVMS 52 (290)
T ss_pred chhhHHHHHHHHHHHHHHHH
Confidence 34677777777766555443
No 8
>1vsq_C Mannose-specific phosphotransferase enzyme IIB component; sugar transport, complex (transferase/phosphocarrier, cytoplasm, membrane; HET: NEP; NMR {Escherichia coli} PDB: 2jzn_C 2jzo_D 2jzh_A
Probab=6.35 E-value=9.2e+02 Score=19.10 Aligned_cols=57 Identities=9% Similarity=0.008 Sum_probs=37.5
Q ss_pred hCCceEEEEcchhhhccHHHHHHHHcC--cEEeeCCChHHHHHHHHHHhhCCCeEEEEE
Q 024829 204 LGKSFKFISKTGIFLFPVIGWAMSMMG--VIPLKRMDSRSQLAQVSALHPLGFEIFIGF 260 (262)
Q Consensus 204 l~~~~~fVaK~EL~~iP~~G~~~~~~g--~IpVdR~~~~~alk~i~~~l~~G~sIvI~f 260 (262)
+.-...+|+.+|+.+-|+...++++.- .+-+.=-+-.++++.+.+...++..++|+|
T Consensus 28 ~~~~~IiVvnD~vA~D~~~k~~lk~a~P~gvk~~i~sve~ai~~~~~~~~~~~~v~ll~ 86 (165)
T 1vsq_C 28 TNVSRIIVVSDEVAADTVRKTLLTQVAPPGVTAHVVDVAKMIRVYNNPKYAGERVMLLF 86 (165)
T ss_dssp TTCSEEEEECHHHHTCHHHHHHHHHTCCTTCEEEEECHHHHHHHHTCGGGTTCEEEEEE
T ss_pred cCCCEEEEeCccccCCHHHHHHHHhcCCCCCeEEEEEHHHHHHHHhccccCCcEEEEEE
Confidence 345678888999999998888888753 233322334556666655445667777765
No 9
>1bhu_A SMPI, metalloproteinase inhibitor; signal; NMR {Streptomyces nigrescens} SCOP: b.11.1.3
Probab=6.25 E-value=2.3e+02 Score=20.44 Aligned_cols=16 Identities=38% Similarity=0.727 Sum_probs=12.3
Q ss_pred ccCCCCCCCCCCcccc
Q 024829 27 SRLCPYKGLGCSAYNQ 42 (262)
Q Consensus 27 ~~~~~~~~~~~~~~~~ 42 (262)
..+|+|.|-|-+.-+.
T Consensus 7 gslctysgtglsgart 22 (102)
T 1bhu_A 7 GSLCTYSGTGLSGART 22 (102)
T ss_dssp SSBCCBBSSSSCBSCC
T ss_pred CcceeeccCCccccee
Confidence 3579999998876554
No 10
>3cdw_H Protein 3B, VPG; RNA-dependent RNA polymerase, protein primer vizier viral enzymes involved in replication, transferase-V protein complex; 2.50A {Coxsackievirus B3} PDB: 2bbl_A 2bbp_A
Probab=6.24 E-value=1.9e+02 Score=16.51 Aligned_cols=17 Identities=24% Similarity=0.362 Sum_probs=11.7
Q ss_pred CCCCCCCCccccccccC
Q 024829 31 PYKGLGCSAYNQAVLRN 47 (262)
Q Consensus 31 ~~~~~~~~~~~~~~~~~ 47 (262)
+|.|+--+.-+.|.||.
T Consensus 2 ~YsG~p~~~~k~P~lR~ 18 (26)
T 3cdw_H 2 AYTGVPNQKPRVPTLRQ 18 (26)
T ss_pred CccCCCcccCCCCeeEE
Confidence 57777666667777774
Done!