RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 024829
(262 letters)
>gnl|CDD|215488 PLN02901, PLN02901, 1-acyl-sn-glycerol-3-phosphate acyltransferase.
Length = 214
Score = 224 bits (572), Expect = 6e-74
Identities = 85/109 (77%), Positives = 91/109 (83%)
Query: 135 MLVGHPFVLLLDRYRRKFHHFIAKLWATLTVSPFLKLEIEGLENLPSSDTPAVYVSNHQS 194
MLV HPFVLL DRYRRK HFI K+WATL+ SPF K+E+EGLENLPS D PAVYVSNHQS
Sbjct: 1 MLVQHPFVLLFDRYRRKAQHFINKVWATLSTSPFYKIEVEGLENLPSPDEPAVYVSNHQS 60
Query: 195 FLDIYTLLTLGKSFKFISKTGIFLFPVIGWAMSMMGVIPLKRMDSRSQL 243
FLDIYTL LG+ FKFISKT IFL P+IGWAM M G IPLKRMD RSQL
Sbjct: 61 FLDIYTLFHLGRPFKFISKTSIFLIPIIGWAMYMTGHIPLKRMDRRSQL 109
>gnl|CDD|153251 cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis:
AGPAT-like. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are such LPLATs as
1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT,
PlsC), Tafazzin (product of Barth syndrome gene), and
similar proteins.
Length = 184
Score = 81.5 bits (202), Expect = 6e-19
Identities = 31/89 (34%), Positives = 50/89 (56%), Gaps = 5/89 (5%)
Query: 157 AKLWATLTVSPFLKLEIEGLENLPSSDTPAVYVSNHQSFLDIYTLLT-LGKSFKFISKTG 215
+L L +++ +EGLENLP P + V+NHQS+LD L L + +F++K
Sbjct: 1 LRLLLRLL---GVRVRVEGLENLPP-KGPVIIVANHQSYLDPLVLGAALPRPIRFVAKKE 56
Query: 216 IFLFPVIGWAMSMMGVIPLKRMDSRSQLA 244
+F P +GW + ++G IP+ R + RS
Sbjct: 57 LFKIPFLGWLLRLLGAIPIDRGNGRSARE 85
>gnl|CDD|223282 COG0204, PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase
[Lipid metabolism].
Length = 255
Score = 73.8 bits (181), Expect = 1e-15
Identities = 40/119 (33%), Positives = 65/119 (54%), Gaps = 6/119 (5%)
Query: 123 VTAVVAIFLIVLMLVGHPFVLLLDR--YRRKFHHFIAKLWATLTVSPFLKLEIEGLENLP 180
A++ I +I+ +L+ P L+ R ++ L L + L++E+EGLENLP
Sbjct: 2 RLALLLILVILFLLLPLPLALIALFRLRRPVLRRWLRFLVLLLLLLFGLRVEVEGLENLP 61
Query: 181 SSDTPAVYVSNHQSFLDIYTL---LTLGKSFKFISKTGIFLFPVIGWAMSMMGVIPLKR 236
PA+ V+NHQSFLD L L +F++K +F P++GW + ++G IP+ R
Sbjct: 62 K-GGPALVVANHQSFLDPLLLSLALPRRGPVRFVAKKELFKVPLLGWLLRLLGAIPVDR 119
>gnl|CDD|216567 pfam01553, Acyltransferase, Acyltransferase. This family contains
acyltransferases involved in phospholipid biosynthesis
and other proteins of unknown function. This family also
includes tafazzin, the Barth syndrome gene.
Length = 131
Score = 62.7 bits (153), Expect = 2e-12
Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 5/87 (5%)
Query: 170 KLEIEGLENLPSSDTPAVYVSNHQSFLDI----YTLLTLGKSFKFISKTGIFLFPVIGWA 225
++ + GLENLP PA+ V+NHQS+LD L G+ F++K + P++GW
Sbjct: 1 RVRVHGLENLPRGG-PAIVVANHQSYLDPLLLSLLLPKRGRPLVFVAKDELLNLPLLGWL 59
Query: 226 MSMMGVIPLKRMDSRSQLAQVSALHPL 252
M ++G I + R +++ + L L
Sbjct: 60 MRLLGCIFIDRKNAKDAANTLEYLVEL 86
>gnl|CDD|214724 smart00563, PlsC, Phosphate acyltransferases. Function in
phospholipid biosynthesis and have either
glycerolphosphate, 1-acylglycerolphosphate, or
2-acylglycerolphosphoethanolamine acyltransferase
activities. Tafazzin, the product of the gene mutated in
patients with Barth syndrome, is a member of this
family.
Length = 118
Score = 57.8 bits (140), Expect = 7e-11
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 186 AVYVSNHQSFLDIYTLLTL----GKSFKFISKTGIFLFPVIGWAMSMMGVIPLKRMDSRS 241
A+ V+NHQSFLD L L +F++K +F P++GW + ++G I + R + R
Sbjct: 1 ALVVANHQSFLDPLVLSALLPRKLGRVRFVAKKELFYVPLLGWLLRLLGAIFIDRSNGRK 60
Query: 242 QLAQVSALH 250
A +
Sbjct: 61 ARAALREAV 69
>gnl|CDD|129621 TIGR00530, AGP_acyltrn, 1-acyl-sn-glycerol-3-phosphate
acyltransferases. This model describes the core
homologous region of a collection of related proteins,
several of which are known to act as
1-acyl-sn-glycerol-3-phosphate acyltransferases (EC
2.3.1.51). Proteins scoring above the trusted cutoff are
likely to have the same general activity. However, there
is variation among characterized members as to whether
the acyl group can be donated by acyl carrier protein or
coenzyme A, and in the length and saturation of the
donated acyl group. 1-acyl-sn-glycerol-3-phosphate
acyltransferase is also called 1-AGP acyltransferase,
lysophosphatidic acid acyltransferase, and LPA
acyltransferase [Fatty acid and phospholipid metabolism,
Biosynthesis].
Length = 130
Score = 57.7 bits (140), Expect = 1e-10
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 169 LKLEIEGLENLPSSDTPAVYVSNHQSFLDIYTLL-TLGKSFKFISKTGIFLFPVIGWAMS 227
LK+E+ G ENLP+ +P + V+NHQS LD TL FI+K + P G +
Sbjct: 2 LKVEVVGPENLPA-KSPVLVVANHQSNLDPLTLSAAFPPPIVFIAKKELKWIPFFGIMLW 60
Query: 228 MMGVIPLKRMDSRS 241
+ G I + R + R+
Sbjct: 61 LTGAIFIDRENIRA 74
>gnl|CDD|153254 cd07992, LPLAT_AAK14816-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis: Unknown
AAK14816-like. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are uncharacterized
glycerol-3-phosphate acyltransferases such as the
Plasmodium falciparum locus AAK14816 putative
acyltransferase, and similar proteins.
Length = 203
Score = 54.2 bits (131), Expect = 6e-09
Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Query: 168 FLKLEIEGLENLPSSDTPAVYVSNHQ-SFLDIYTL-LTLGKSFKFISKTGIFLFPVIGWA 225
F ++ + G EN+P D P +++ NH + +D L TL + +F++K +F P+IGW
Sbjct: 13 FRRITVVGRENVPK-DGPVIFLGNHPNALIDPLLLAATLRRPVRFLAKADLFKNPLIGWL 71
Query: 226 MSMMGVIPLKR 236
+ G IP+ R
Sbjct: 72 LESFGAIPVYR 82
>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine
acyltransferase; Validated.
Length = 1146
Score = 55.7 bits (135), Expect = 8e-09
Identities = 25/121 (20%), Positives = 51/121 (42%), Gaps = 8/121 (6%)
Query: 124 TAVVAIFLIVLMLVGHPFVLLLDRYRRKFHHFIAKLWATLTVSPFLKLEIEGLENLPSSD 183
A + + ++ L+G + L + + L + +L +EG EN+P+
Sbjct: 388 PAGLFYLIALVTLIGTLYTL------LLLPDSLLRFLLLLLMHTRYRLRVEGRENIPA-K 440
Query: 184 TPAVYVSNHQSFLD-IYTLLTLGKSFKFISKTGIFLFPVIGWAMSMMGVIPLKRMDSRSQ 242
A+ + NH S++D + +F+ + I+ + W + GVIP+ S+
Sbjct: 441 GGALLLGNHVSWIDWALLQAASPRPIRFVMERSIYEKWYLKWFFKLFGVIPISSGGSKES 500
Query: 243 L 243
L
Sbjct: 501 L 501
>gnl|CDD|153253 cd07991, LPLAT_LPCAT1-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis:
LPCAT1-like. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are such LPLATs as
lysophosphatidylcholine acyltransferase 1 (LPCAT-1),
glycerol-3-phosphate acyltransferase 3 (GPAT3), and
similar sequences.
Length = 211
Score = 53.0 bits (128), Expect = 2e-08
Identities = 20/88 (22%), Positives = 39/88 (44%), Gaps = 3/88 (3%)
Query: 163 LTVSPFLKLEIEGLENLPSSDTPAVYVSNHQSFLDIYTLLTLGKSFKFISKTGIFLFPVI 222
L F +++ G + P + P + V+NH SF+D +L ++K + P I
Sbjct: 5 LFAFGFYVIKVHGKPDPP--EAPRIIVANHTSFIDPL-ILFSDLFPSIVAKKELGKLPFI 61
Query: 223 GWAMSMMGVIPLKRMDSRSQLAQVSALH 250
G + +G I + R + + + V +
Sbjct: 62 GTILRALGCIFVDRSEPKDRKKVVEEIK 89
>gnl|CDD|237584 PRK14014, PRK14014, putative acyltransferase; Provisional.
Length = 301
Score = 53.7 bits (130), Expect = 2e-08
Identities = 42/159 (26%), Positives = 72/159 (45%), Gaps = 26/159 (16%)
Query: 110 KLGSKVRGICFYAVTAVVAIFLIVLMLVGHPFVLLL--DRYRR---KFHHFIAKLWAT-- 162
L + +RG+ + + +F V +++ LLL RR + +FIA+ W +
Sbjct: 4 FLLAPLRGLLSILLLILNTLFWSVPIIILGLLKLLLPIPAIRRACSRLLNFIAEAWISIN 63
Query: 163 ---LTVSPFLKLEIEGLENLPSSDTPAVYVSNHQSFLDIYTLLTLGKS----FKFISKTG 215
L + P + ++EGLE L S + +SNHQS++DI L + KF K
Sbjct: 64 NVILRLLPRTQWDVEGLEGL-SKKGWYLVISNHQSWVDILVLQYVFNRRIPMLKFFLKQE 122
Query: 216 IFLFPVIG---WAMSMMGVIPLKRMDSRSQLAQVSALHP 251
+ P +G WA+ P + S++ LA+ +P
Sbjct: 123 LIWVPFLGLAWWALDF----PFMKRYSKAYLAK----NP 153
>gnl|CDD|153252 cd07990, LPLAT_LCLAT1-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis:
LCLAT1-like. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are such LPLATs as
Lysocardiolipin acyltransferase 1 (LCLAT1) or
1-acyl-sn-glycerol-3-phosphate acyltransferase and
similar proteins.
Length = 193
Score = 49.9 bits (120), Expect = 2e-07
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 7/74 (9%)
Query: 169 LKLEIEGLENLPSSDTPAVYVSNHQSFLDIYTLLTLGKSF------KFISKTGIFLFPVI 222
+K+ + G + A+ +SNH+S +D L L F K + K + P+
Sbjct: 10 VKVVVYG-DEPKLPKERALIISNHRSEVDWLVLWMLADRFGRLGRLKIVLKDSLKYPPLG 68
Query: 223 GWAMSMMGVIPLKR 236
GW + I LKR
Sbjct: 69 GWGWQLGEFIFLKR 82
>gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase;
Provisional.
Length = 1140
Score = 45.7 bits (109), Expect = 2e-05
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 168 FLKLEIEGLENLPSSDTPAVYVSNHQSFLDIYTLLTL 204
F ++E++GLENL + AV +NH SFLD L
Sbjct: 438 FYRVEVKGLENLQKAGKKAVIAANHVSFLDGPLLAAY 474
>gnl|CDD|178126 PLN02510, PLN02510, probable 1-acyl-sn-glycerol-3-phosphate
acyltransferase.
Length = 374
Score = 37.0 bits (86), Expect = 0.008
Identities = 40/146 (27%), Positives = 65/146 (44%), Gaps = 18/146 (12%)
Query: 104 YPLSELKLGSKVRGICFYAVTAVVAIFLIVLMLVGHPFVLLL--DRYRRKFHHFIAKLWA 161
PL+ L+ +RG+ V A ++V + +L L Y RK F W
Sbjct: 10 RPLTPLRR---LRGLICLLVLLSTAFMMLVYLAPVSAVLLRLFSVHYSRKATSFFFGSW- 65
Query: 162 TLTVSPFLKLEIEGLENLPSSDT-PA----VYVSNHQSFLDIYTL--LTLGKS----FKF 210
L + PFL +I + + S D P + ++NH++ +D L L L K K+
Sbjct: 66 -LALWPFLFEKINKTKVVFSGDKVPPEERVLLIANHRTEVDWMYLWDLALRKGCLGYIKY 124
Query: 211 ISKTGIFLFPVIGWAMSMMGVIPLKR 236
+ K+ + PV GWA + IP++R
Sbjct: 125 VLKSSLMKLPVFGWAFHIFEFIPVER 150
>gnl|CDD|153244 cd06551, LPLAT, Lysophospholipid acyltransferases (LPLATs) of
glycerophospholipid biosynthesis. Lysophospholipid
acyltransferase (LPLAT) superfamily members are
acyltransferases of de novo and remodeling pathways of
glycerophospholipid biosynthesis. These proteins
catalyze the incorporation of an acyl group from either
acylCoAs or acyl-acyl carrier proteins (acylACPs) into
acceptors such as glycerol 3-phosphate, dihydroxyacetone
phosphate or lyso-phosphatidic acid. Included in this
superfamily are LPLATs such as glycerol-3-phosphate
1-acyltransferase (GPAT, PlsB),
1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT,
PlsC), lysophosphatidylcholine acyltransferase 1
(LPCAT-1), lysophosphatidylethanolamine acyltransferase
(LPEAT, also known as, MBOAT2, membrane-bound
O-acyltransferase domain-containing protein 2), lipid A
biosynthesis lauroyl/myristoyl acyltransferase,
2-acylglycerol O-acyltransferase (MGAT),
dihydroxyacetone phosphate acyltransferase (DHAPAT, also
known as 1 glycerol-3-phosphate O-acyltransferase 1) and
Tafazzin (the protein product of the Barth syndrome
(TAZ) gene).
Length = 187
Score = 35.9 bits (83), Expect = 0.011
Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 11/87 (12%)
Query: 168 FLKLEIEGLENLPSSDTPAVYVSNHQSFLDIYTL-LTLGKSFKF-----ISKTGIFLFPV 221
F++LE++G P P ++VSNH S+ D L L L + + + + + +P
Sbjct: 11 FVRLEVKGPPPPPG-GGPVLFVSNHSSWWDGLILFLLLERGLRRDVYGLMDEELLERYPF 69
Query: 222 IGWAMSMMGVIPLKRMDSRSQLAQVSA 248
+G + R RS +
Sbjct: 70 FTR----LGAFSVDRDSPRSAAKSLKY 92
>gnl|CDD|153250 cd07988, LPLAT_ABO13168-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis: Unknown
ABO13168. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are uncharacterized
phospholipid/glycerol acyltransferases such as the
Acinetobacter baumannii ATCC 17978 locus ABO13168
putative acyltransferase, and similar proteins.
Length = 163
Score = 32.2 bits (74), Expect = 0.13
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
Query: 192 HQSFLD-IYTLLT---LGKSFKFISKTGIFLFPVIGWAMSMMGVIPLKRMDSRSQLAQVS 247
H S D + LL LG F+ K +F P+ G M +G IP+ R + + QV
Sbjct: 29 HTSNWDFVLGLLAAFALGLKISFLGKHSLFKPPL-GPFMRWLGGIPVDRSRAGGLVEQVV 87
Query: 248 A 248
Sbjct: 88 E 88
>gnl|CDD|153249 cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like.
Lysophospholipid acyltransferase (LPLAT) superfamily
member: acyltransferases of de novo and remodeling
pathways of glycerophospholipid biosynthesis which
catalyze the incorporation of an acyl group from either
acylCoAs or acyl-acyl carrier proteins (acylACPs) into
acceptors such as glycerol 3-phosphate, dihydroxyacetone
phosphate or lyso-phosphatidic acid. Included in this
suubgroup are such LPLATs as 2-acylglycerol
O-acyltransferase (MGAT), and similar proteins.
Length = 212
Score = 31.9 bits (73), Expect = 0.23
Identities = 21/73 (28%), Positives = 29/73 (39%), Gaps = 8/73 (10%)
Query: 168 FLKLEIEGLENLPSSDTPAVYVSNHQSFLDIYTLLTLGKSFKF-----ISKTGIFLFPVI 222
F E+ GLEN+P + PA+ V H LL F + FLFP+
Sbjct: 5 FRVYEVRGLENIP-DEGPALLVHPHGGLPIDGALLAAAFLLLFPGRLPRALADHFLFPLP 63
Query: 223 GWAM--SMMGVIP 233
G +G +P
Sbjct: 64 GLRDLLRRLGAVP 76
>gnl|CDD|240242 PTZ00046, PTZ00046, rifin; Provisional.
Length = 358
Score = 30.3 bits (69), Expect = 0.85
Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 4/36 (11%)
Query: 117 GICFYAVTA-VVAIFLIVLMLVGHPFVLLLDRYRRK 151
I A+ A +VAI +IVL++V + L+ RYRRK
Sbjct: 311 TILQTAIIASIVAIVVIVLIMV---IIYLILRYRRK 343
>gnl|CDD|225094 COG2183, Tex, Transcriptional accessory protein [Transcription].
Length = 780
Score = 30.7 bits (70), Expect = 0.96
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 233 PLKRMDSRSQLAQVSALHPLGFEIFIGFL 261
D+R QL +V L P FE GFL
Sbjct: 531 ENGAFDNRKQLKKVPRLGPKAFEQCAGFL 559
>gnl|CDD|233430 TIGR01477, RIFIN, variant surface antigen, rifin family. This
model represents the rifin branch of the rifin/stevor
family (pfam02009) of predicted variant surface antigens
as found in Plasmodium falciparum. This model is based
on a set of rifin sequences kindly provided by Matt
Berriman from the Sanger Center. This is a global model
and assesses a penalty for incomplete sequence.
Additional fragmentary sequences may be found with the
fragment model and a cutoff of 20 bits.
Length = 353
Score = 30.1 bits (68), Expect = 1.0
Identities = 12/26 (46%), Positives = 19/26 (73%), Gaps = 3/26 (11%)
Query: 126 VVAIFLIVLMLVGHPFVLLLDRYRRK 151
++AI +IVL++V + L+ RYRRK
Sbjct: 316 IIAILIIVLIMV---IIYLILRYRRK 338
>gnl|CDD|216842 pfam02009, Rifin_STEVOR, Rifin/stevor family. Several multicopy
gene families have been described in Plasmodium
falciparum, including the stevor family of subtelomeric
open reading frames and the rif interspersed repetitive
elements. Both families contain three predicted
transmembrane segments. It has been proposed that stevor
and rif are members of a larger superfamily that code
for variant surface antigens.
Length = 290
Score = 29.2 bits (66), Expect = 1.8
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 5/27 (18%)
Query: 126 VVAIFLIVL-MLVGHPFVLLLDRYRRK 151
+AI +IVL ML+ + L+ RYRRK
Sbjct: 253 AIAILIIVLVMLI----IYLILRYRRK 275
>gnl|CDD|173657 cd05113, PTKc_Btk_Bmx, Catalytic domain of the Protein Tyrosine
Kinases, Bruton's tyrosine kinase and Bone marrow kinase
on the X chromosome. Protein Tyrosine Kinase (PTK)
family; Bruton's tyrosine kinase (Btk) and Bone marrow
kinase on the X chromosome (Bmx); catalytic (c) domain.
The PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Btk and
Bmx (also named Etk) are members of the Tec subfamily of
proteins, which are cytoplasmic (or nonreceptor) tyr
kinases with similarity to Src kinases in that they
contain Src homology protein interaction domains (SH3,
SH2) N-terminal to the catalytic tyr kinase domain.
Unlike Src kinases, most Tec subfamily members (except
Rlk) also contain an N-terminal pleckstrin homology (PH)
domain, which binds the products of PI3K and allows
membrane recruitment and activation. In addition, Btk
contains the Tec homology (TH) domain with proline-rich
and zinc-binding regions. Tec kinases are expressed
mainly by haematopoietic cells. Btk is expressed in
B-cells, and a variety of myeloid cells including mast
cells, platelets, neutrophils, and dendrictic cells. It
interacts with a variety of partners, from cytosolic
proteins to nuclear transcription factors, suggesting a
diversity of functions. Stimulation of a diverse array
of cell surface receptors, including antigen engagement
of the B-cell receptor (BCR), leads to PH-mediated
membrane translocation of Btk and subsequent
phosphorylation by Src kinase and activation. Btk plays
an important role in the life cycle of B-cells including
their development, differentiation, proliferation,
survival, and apoptosis. Mutations in Btk cause the
primary immunodeficiency disease, X-linked
agammaglobulinaemia (XLA) in humans. Bmx is primarily
expressed in bone marrow and the arterial endothelium,
and plays an important role in ischemia-induced
angiogenesis. It facilitates arterial growth, capillary
formation, vessel maturation, and bone marrow-derived
endothelial progenitor cell mobilization.
Length = 256
Score = 29.1 bits (65), Expect = 2.0
Identities = 13/45 (28%), Positives = 25/45 (55%)
Query: 208 FKFISKTGIFLFPVIGWAMSMMGVIPLKRMDSRSQLAQVSALHPL 252
KF SK+ ++ F V+ W + +G +P +R ++ + +VS L
Sbjct: 176 SKFSSKSDVWAFGVLMWEVYSLGKMPYERFNNSETVEKVSQGLRL 220
>gnl|CDD|153248 cd07986, LPLAT_ACT14924-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis: Unknown
ACT14924. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are uncharacterized
phospholipid/glycerol acyltransferases such as the
Pectobacterium carotovorum subsp. carotovorum PC1 locus
ACT14924 putative acyltransferase, and similar proteins.
Length = 210
Score = 28.8 bits (65), Expect = 2.1
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
Query: 169 LKLEIEGLENLPSSDTPAVYVSNHQ-SFLD----IYTLLTLGKSFKFISKTGIFLFP 220
L++++ GLEN+P D P V V+NH LD L ++ + ++ + P
Sbjct: 8 LEVDVSGLENIPK-DGPVVIVANHPFGILDGLILADLLGSVRPDVRILANQLLSKIP 63
>gnl|CDD|178006 PLN02380, PLN02380, 1-acyl-sn-glycerol-3-phosphate acyltransferase.
Length = 376
Score = 28.6 bits (64), Expect = 3.2
Identities = 25/99 (25%), Positives = 40/99 (40%), Gaps = 32/99 (32%)
Query: 155 FIAKLWATLTV---SPFLKLEIEGLENLPSSDTPAVYVSNHQSFLDIY------------ 199
++ WA + V + E+ G E+ A+ +SNH+S +D
Sbjct: 59 WLVDWWAGVKVQLYADEETFELMGKEH-------ALVISNHRSDIDWLVGWILAQRSGCL 111
Query: 200 --TLLTLGKSFKFISKTGIFLFPVIGWAMSMMGVIPLKR 236
L + KS KF+ PVIGW+M + L+R
Sbjct: 112 GSALAVMKKSSKFL--------PVIGWSMWFSEYVFLER 142
>gnl|CDD|233391 TIGR01386, cztS_silS_copS, heavy metal sensor kinase. Members of
this family contain a sensor histidine kinase domain
(pfam00512) and a domain found in bacterial signal
proteins (pfam00672). This group is separated
phylogenetically from related proteins with similar
architecture and contains a number of proteins
associated with heavy metal resistance efflux systems
for copper, silver, cadmium, and/or zinc.
Length = 457
Score = 28.5 bits (64), Expect = 3.5
Identities = 14/70 (20%), Positives = 29/70 (41%), Gaps = 12/70 (17%)
Query: 184 TPAVYV-----SNHQSFLDIYTLLTLGKSFKFISKTGIFLFPVIGWAMSMMGVIPLKRMD 238
P + H LD + I+ + L ++GW ++ +G+ PL+R+
Sbjct: 142 KPVQITVALDINAHTHLLDALRKWLIL-----IAVLLVLLTALLGWWITRLGLEPLRRL- 195
Query: 239 SRSQLAQVSA 248
+ A++S
Sbjct: 196 -SAVAARISP 204
>gnl|CDD|182608 PRK10639, PRK10639, formate dehydrogenase-O subunit gamma;
Provisional.
Length = 211
Score = 27.8 bits (62), Expect = 5.6
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 13/57 (22%)
Query: 208 FKFISKTGI-FLFPVIGWAMSMMGVIPLKRMDSRSQLAQVSALHP-LGFEIFIGFLV 262
F + +G+ F FP W M+++G QLA++ LHP +G +F F++
Sbjct: 25 FILAAVSGLGFFFPSFNWLMNILGT---------PQLARI--LHPFVGVVMFASFII 70
>gnl|CDD|224027 COG1102, Cmk, Cytidylate kinase [Nucleotide transport and
metabolism].
Length = 179
Score = 27.3 bits (61), Expect = 6.8
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 69 PNFDLKLNRRCYDIKFSRNVVVRSQLAG 96
P D +++RR ++ NVV+ +LAG
Sbjct: 57 PEIDKEIDRRQKELAKEGNVVLEGRLAG 84
>gnl|CDD|217527 pfam03387, Herpes_UL46, Herpesvirus UL46 protein.
Length = 443
Score = 27.4 bits (61), Expect = 8.2
Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 19/70 (27%)
Query: 122 AVTAVVAI---------FLIVLMLVGHPFVL---LLDRYRRK-------FHHFIAKLWAT 162
A+ A V + +L+ + L G+ L L + Y R F HF+ KL+ T
Sbjct: 303 AIVAAVELVTLVHHHCQYLLNMTLAGYVCWLDGGLNNPYLRAALRSQGRFCHFLGKLFPT 362
Query: 163 LTVSPFLKLE 172
++ + ++E
Sbjct: 363 MSSHSWAEME 372
>gnl|CDD|237606 PRK14089, PRK14089, ipid-A-disaccharide synthase; Provisional.
Length = 347
Score = 27.2 bits (61), Expect = 9.3
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 12/45 (26%)
Query: 136 LVGHPFVLLLDRYR-RKFHHFIAKLWATLTVSPFLKLEIEGLENL 179
L+G PFVL Y+ + +FIAK+ F+KL+ GL N+
Sbjct: 252 LIGTPFVLA---YKAKAIDYFIAKM--------FVKLKHIGLANI 285
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.327 0.140 0.430
Gapped
Lambda K H
0.267 0.0707 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,325,024
Number of extensions: 1265315
Number of successful extensions: 1798
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1775
Number of HSP's successfully gapped: 60
Length of query: 262
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 167
Effective length of database: 6,723,972
Effective search space: 1122903324
Effective search space used: 1122903324
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 58 (26.2 bits)