RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 024829
(262 letters)
>1iuq_A Glycerol-3-phosphate acyltransferase; open twisted alpha/beta, four
helix bundle; 1.55A {Cucurbita moschata} SCOP: c.112.1.1
PDB: 1k30_A
Length = 367
Score = 32.5 bits (73), Expect = 0.13
Identities = 17/111 (15%), Positives = 35/111 (31%), Gaps = 20/111 (18%)
Query: 160 WATLTVSPFLKLE---IEGLENLPS------SDTPAVYVSNHQSFLD---IYTLL----- 202
+ + P + + L V +SNHQ+ D I LL
Sbjct: 97 FGQNYIRPLIDFGNSFVGNLSLFKDIEEKLQQGHNVVLISNHQTEADPAIISLLLEKTNP 156
Query: 203 TLGKSFKFISKTGIFLFPVIGWAM---SMMGVIPLKRMDSRSQLAQVSALH 250
+ ++ F++ + P+ +++ V K M +L +
Sbjct: 157 YIAENTIFVAGDRVLADPLCKPFSIGRNLICVYSKKHMFDIPELTETKRKA 207
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.2 bits (70), Expect = 0.38
Identities = 40/194 (20%), Positives = 55/194 (28%), Gaps = 77/194 (39%)
Query: 85 SRNVVVRSQLAG---TGTPDAAYPLSELKLGSKVRGICFYAVTA----VVAIFLIVLMLV 137
++++ + P S L F AV +VAIF
Sbjct: 118 KTKELIKNYITARIMAKRPFDKKSNSAL----------FRAVGEGNAQLVAIF------- 160
Query: 138 G------HPFVLLLDRYRRKFHHFIAKLWATLTVSPFLKLEIEGLENLPSS--DTPAVYV 189
G F L D Y+ +H V +K E L L + D V+
Sbjct: 161 GGQGNTDDYFEELRDLYQT-YHVL---------VGDLIKFSAETLSELIRTTLDAEKVFT 210
Query: 190 SNHQSFLDIYTLL-----TLGKSF---KFISKTGIFLFPVIGWAMSMMGVIPLKRMDSRS 241
L+I L T K + IS P+IG +
Sbjct: 211 QG----LNILEWLENPSNTPDKDYLLSIPIS------CPLIG----------V------I 244
Query: 242 QLAQ-VSALHPLGF 254
QLA V LGF
Sbjct: 245 QLAHYVVTAKLLGF 258
Score = 26.9 bits (59), Expect = 7.8
Identities = 32/201 (15%), Positives = 63/201 (31%), Gaps = 60/201 (29%)
Query: 84 FSRNVVVRSQLAGTG-TPDAAYPLSELKLGSKVRGICFYAVTAVVAIFLIVLMLVGHPFV 142
F++ + + L TPD Y LS ++ LI ++ + H +V
Sbjct: 209 FTQGLNILEWLENPSNTPDKDYLLS-----------------IPISCPLIGVIQLAH-YV 250
Query: 143 LLLDRYRRKFHHFIAKLWATLTVSPFLKLEIEGLENLPSSDTPAVYVS---NHQSFLDIY 199
+ + L S + L + AV ++ + +SF
Sbjct: 251 VTAKLLGFTPGELRSYLKGATGHS----------QGLVT----AVAIAETDSWESFFVS- 295
Query: 200 TLLTLGKSFKFISKTGI---FLFPVI---------------GWAMSMMGVIPLKRMDSRS 241
+ F FI G+ +P G M+ + L + +
Sbjct: 296 VRKAITVLF-FI---GVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQD 351
Query: 242 QLAQVSALHPLGFEIFIGFLV 262
+ + ++ P G ++ I LV
Sbjct: 352 YVNKTNSHLPAGKQVEIS-LV 371
Score = 26.9 bits (59), Expect = 8.0
Identities = 23/127 (18%), Positives = 32/127 (25%), Gaps = 58/127 (45%)
Query: 86 RNVVV--------------RSQLAGTGTPDAAYPLSELKLGSKVRGICFYAVTAVVAIFL 131
+N+VV R A +G + P SE KL R F V +
Sbjct: 375 KNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNR---FLPVAS------ 425
Query: 132 IVLMLVGHPFVLLLDRYRRKFHHFIAKLWATLTVSPFLKLEIEGLENLPSSDTPAVYVSN 191
P FH S L + + D VS
Sbjct: 426 --------P-----------FH------------SHLLVPASDLIN----KDLVKNNVSF 450
Query: 192 HQSFLDI 198
+ + I
Sbjct: 451 NAKDIQI 457
>4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid
biosynthesis, (S)-lysine biosynthesis VIA DAP PAT
(beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB:
4dpq_A*
Length = 360
Score = 29.9 bits (68), Expect = 0.68
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 6/42 (14%)
Query: 224 WAMSMMGVI------PLKRMDSRSQLAQVSALHPLGFEIFIG 259
A++ +GV P + +L V + +G E F+G
Sbjct: 301 TALAQLGVSRPVFRLPYVPLPLSKRLEFVKLVKEIGREHFVG 342
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex
(helicase/DNA), DNA unwinding, hydrolase/DNA complex;
HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19
c.37.1.19
Length = 673
Score = 27.5 bits (62), Expect = 4.9
Identities = 7/26 (26%), Positives = 12/26 (46%), Gaps = 2/26 (7%)
Query: 129 IFLIVLMLVGHPFVLLLDRYRRKFHH 154
I L L+L + V R++ K +
Sbjct: 187 ILLPTLLLQANEEVR--KRWQNKIRY 210
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces
cerevisiae}
Length = 1030
Score = 27.5 bits (61), Expect = 5.2
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 236 RMDSRSQLAQVSALHPLGFEIFIGFL 261
+ +R QL + LH F GFL
Sbjct: 743 PLLARQQLITHNILHKTIFMNSAGFL 768
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.5 bits (60), Expect = 5.6
Identities = 32/215 (14%), Positives = 53/215 (24%), Gaps = 66/215 (30%)
Query: 1 MEVAAAYPSFSLLHLRSRKSSTHSCLSRLCPYKGLGCSAYNQAVLRNPYSSAQNGFQCIT 60
M V +SL+ + K ST S S K N+ L +
Sbjct: 405 MVVVNKLHKYSLV-EKQPKESTISIPSIYLELK---VKLENEYALHR---------SIVD 451
Query: 61 RKRVGFSWPNFDLKLN--------------------------RRCY-DIKFSRNVVVRSQ 93
+ ++ + DL R + D +F +
Sbjct: 452 HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDS 511
Query: 94 LAGTGTPDAAYPLSELKLGSKVRGICFYAVTAVVAIFLIVLMLVGHPFVLLLDRYRRKFH 153
A + L +LK IC P +R
Sbjct: 512 TAWNASGSILNTLQQLKFYKPY--IC-----------------DNDP---KYERLVNAIL 549
Query: 154 HFIAKLWATLTVSPFLKLEIEGLENLPSSDTPAVY 188
F+ K+ L S + L L + A++
Sbjct: 550 DFLPKIEENLICSKYTDLLRIALMA----EDEAIF 580
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces
cerevisiae}
Length = 1219
Score = 27.1 bits (60), Expect = 7.2
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 236 RMDSRSQLAQVSALHPLGFEIFIGFL 261
+ +R QL + LH F GFL
Sbjct: 740 PLLARQQLITHNILHKTIFMNSAGFL 765
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.327 0.140 0.430
Gapped
Lambda K H
0.267 0.0742 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,948,095
Number of extensions: 225141
Number of successful extensions: 445
Number of sequences better than 10.0: 1
Number of HSP's gapped: 445
Number of HSP's successfully gapped: 11
Length of query: 262
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 170
Effective length of database: 4,133,061
Effective search space: 702620370
Effective search space used: 702620370
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 56 (25.3 bits)