RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 024829
         (262 letters)



>d1iuqa_ c.112.1.1 (A:) Glycerol-3-phosphate (1)-acyltransferase
           {Cushaw squash (Cucurbita moschata) [TaxId: 3662]}
          Length = 367

 Score = 51.9 bits (124), Expect = 2e-08
 Identities = 26/147 (17%), Positives = 47/147 (31%), Gaps = 26/147 (17%)

Query: 111 LGSKVRGICFYAVTAVVAIFLIVLMLVGHPFVL----LLDRYRRKFHHFIAKLWATL--- 163
           + S         ++ +      +L+ V  PFV        R    ++ F       L   
Sbjct: 49  IESGNPKADEIVLSNMTVALDRILLDVEDPFVFSSHHKAIREPFDYYIFGQNYIRPLIDF 108

Query: 164 ------TVSPFLKLEIEGLENLPSSDTPAVYVSNHQSFLD---IYTLLT-----LGKSFK 209
                  +S F  +E    E L       V +SNHQ+  D   I  LL      + ++  
Sbjct: 109 GNSFVGNLSLFKDIE----EKLQQGH-NVVLISNHQTEADPAIISLLLEKTNPYIAENTI 163

Query: 210 FISKTGIFLFPVIGWAMSMMGVIPLKR 236
           F++   +   P+         +I +  
Sbjct: 164 FVAGDRVLADPLCKPFSIGRNLICVYS 190


>d1x49a1 d.50.1.1 (A:8-92) dsRNA-dependent protein kinase pkr {Mouse
           (Mus musculus) [TaxId: 10090]}
          Length = 85

 Score = 26.2 bits (57), Expect = 1.4
 Identities = 11/68 (16%), Positives = 27/68 (39%), Gaps = 3/68 (4%)

Query: 181 SSDTPAVYVSNHQSFLDIYTLLTLGKSFKFISKTGIFLFPVIGWAMSMMGVIPLKRMDSR 240
           +SDTP  Y+     +  ++ +     ++K +S +G        + + +      +     
Sbjct: 2   ASDTPGFYMDKLNKYRQMHGVAI---TYKELSTSGPPHDRRFTFQVLIDEKEFPEAKGRS 58

Query: 241 SQLAQVSA 248
            Q A+ +A
Sbjct: 59  KQEARNAA 66


>d1d8ia_ d.63.1.1 (A:) mRNA triphosphatase CET1 {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 301

 Score = 25.6 bits (56), Expect = 7.4
 Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 4/31 (12%)

Query: 57  QCITRKRVGFSWPNFDLKLNRRCYDIKFSRN 87
           Q I ++ V        L   +  YD+K S N
Sbjct: 167 QFIEKRHVA----QLLLYSPKDSYDVKISLN 193


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.140    0.430 

Gapped
Lambda     K      H
   0.267   0.0542    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 952,709
Number of extensions: 42144
Number of successful extensions: 82
Number of sequences better than 10.0: 1
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 6
Length of query: 262
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 178
Effective length of database: 1,254,276
Effective search space: 223261128
Effective search space used: 223261128
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (24.2 bits)