BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 024830
         (262 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|O32107|YUID_BACSU Uncharacterized membrane protein YuiD OS=Bacillus subtilis (strain
           168) GN=yuiD PE=4 SV=1
          Length = 158

 Score = 95.5 bits (236), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 53/98 (54%), Positives = 64/98 (65%)

Query: 154 LAANPTFVSGLFAWMIAQSTKVFLNFFVERKWDLRLLFASGGMPSSHSALCTALTTSVAL 213
           L  N   +S L A + AQ  KV + F V RK D  L+ ++GGMPSSHSA  TAL+T VAL
Sbjct: 3   LLTNFPLLSSLAAIIFAQVIKVPIQFIVSRKLDWSLVTSTGGMPSSHSAAVTALSTGVAL 62

Query: 214 CHGVADSLFPVCLGFSLIVMYDAIGVRRHAGMQAEVTN 251
            HG+  SLF V   F++I M+DA GVRRHAG QA V N
Sbjct: 63  EHGLDSSLFAVSAIFAVITMFDATGVRRHAGEQATVIN 100


>sp|Q28TU1|RS4_JANSC 30S ribosomal protein S4 OS=Jannaschia sp. (strain CCS1) GN=rpsD
           PE=3 SV=1
          Length = 206

 Score = 37.4 bits (85), Expect = 0.100,   Method: Compositional matrix adjust.
 Identities = 46/203 (22%), Positives = 79/203 (38%), Gaps = 34/203 (16%)

Query: 49  GTPSNPQNRQPEYNNNNDTDNHNHKRNFPVNPFCVLFPILQSIKGLASSQTKKWASRLQA 108
           G P +P NR+ EY        H  +R   ++ F +     Q +KG     T+K   R+ A
Sbjct: 21  GRPKSPVNRR-EYGPGQ----HGQRRKGKLSDFGLQLRAKQKLKGYYGDLTEKQFRRIYA 75

Query: 109 HSSQLENINVIDQNSNDYLQTGAFGAALLSVTSTAKVKISPFVATLAANPTFVSGLFAWM 168
            + +L               TG F   LL     A V  + FV T+ A   FV+     +
Sbjct: 76  EAERLRG------------DTGEFLIGLLERRLDAVVYRAKFVPTVFAARQFVN--HGHV 121

Query: 169 IAQSTKVFLNFFVERKWD----------LRLLFASGGM-----PSSHSALCTALTTSVAL 213
                KV +  +  ++ D          L ++  + G+     P    A  + +T +   
Sbjct: 122 TVNGQKVNIPSYRVKEGDVIAVRDKSKQLAVVLEAVGLAERDVPDYVDADHSKMTATFVR 181

Query: 214 CHGVADSLFPVCLGFSLIVMYDA 236
             G++D  +PV +  +L+V + A
Sbjct: 182 TPGLSDVPYPVVMEPNLVVEFYA 204


>sp|Q6C997|LCMT1_YARLI Leucine carboxyl methyltransferase 1 OS=Yarrowia lipolytica (strain
           CLIB 122 / E 150) GN=PPM1 PE=3 SV=1
          Length = 324

 Score = 32.3 bits (72), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 7/82 (8%)

Query: 186 DLRLLFASGGMPSSHSALCTALTTSVALCHGVADS----LFPVCLGF--SLIVMYDAIGV 239
           DLR +     +P S  +L T + +   LC+   D     +F +   F  S IVMY+ +  
Sbjct: 172 DLRSIGPGFVLPGSDPSLATLIISECCLCYLEPDQAKQVIFWITSEFTNSTIVMYEPLSG 231

Query: 240 RRHAGMQAEVTNIVARAVAMPS 261
           +   G Q  + N+ +R +++PS
Sbjct: 232 QDQFG-QVMIENLASRGISIPS 252


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.131    0.394 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,135,959
Number of Sequences: 539616
Number of extensions: 3456605
Number of successful extensions: 36732
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 34010
Number of HSP's gapped (non-prelim): 2481
length of query: 262
length of database: 191,569,459
effective HSP length: 115
effective length of query: 147
effective length of database: 129,513,619
effective search space: 19038501993
effective search space used: 19038501993
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)