Query 024830
Match_columns 262
No_of_seqs 119 out of 337
Neff 2.7
Searched_HMMs 29240
Date Mon Mar 25 15:08:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024830.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024830hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ipb_A PHON protein, class A n 88.8 1.2 3.9E-05 37.5 7.1 25 191-215 129-153 (230)
2 1d2t_A Acid phosphatase; all a 76.0 3.4 0.00012 34.7 4.9 24 192-215 142-165 (231)
3 1qi9_A Protein (vanadium bromo 42.6 25 0.00087 34.6 4.8 50 166-215 373-433 (556)
4 2jln_A MHP1; hydantoin, transp 13.6 4.5E+02 0.015 24.2 7.1 54 181-234 385-442 (501)
5 2o08_A BH1327 protein; putativ 12.4 1.6E+02 0.0053 23.5 3.2 23 199-221 21-43 (188)
6 3ccg_A HD superfamily hydrolas 11.7 1.7E+02 0.0058 23.3 3.2 23 199-221 22-44 (190)
7 2ogi_A Hypothetical protein SA 10.9 1.8E+02 0.0063 23.3 3.2 23 199-221 29-51 (196)
8 3gon_A Phosphomevalonate kinas 10.4 5E+02 0.017 21.3 5.8 47 171-218 68-125 (335)
9 3flh_A Uncharacterized protein 8.4 97 0.0033 22.8 0.6 24 230-253 73-96 (124)
10 3uqs_A RNA-dependent RNA polym 8.3 1E+02 0.0036 29.4 0.9 16 190-205 292-307 (515)
No 1
>2ipb_A PHON protein, class A nonspecific acid phosphatase PHON; class-A bacterial non-specific acid phosphatase; 2.23A {Salmonella typhimurium} PDB: 2a96_A 2akc_A
Probab=88.83 E-value=1.2 Score=37.53 Aligned_cols=25 Identities=28% Similarity=0.387 Sum_probs=20.1
Q ss_pred hhcCCCCchhHHHHHHHHHHHHHHh
Q 024830 191 FASGGMPSSHSALCTALTTSVALCH 215 (262)
Q Consensus 191 f~SGGMPSSHSA~VsALATaIGl~e 215 (262)
-...+|||.|++...++++.+.+..
T Consensus 129 ~~~~SFPSGHa~~a~a~a~~l~~~~ 153 (230)
T 2ipb_A 129 RKDGSYPSGHDAYSTLLALVLSQAR 153 (230)
T ss_dssp HTSCCSSCHHHHHHHHHHHHHHHHC
T ss_pred CCCCCcChHHHHHHHHHHHHHHHHH
Confidence 3567899999999998888776643
No 2
>1d2t_A Acid phosphatase; all alpha, hydrolase; 1.90A {Escherichia blattae} SCOP: a.111.1.1 PDB: 1eoi_A 1iw8_A
Probab=75.98 E-value=3.4 Score=34.75 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=19.9
Q ss_pred hcCCCCchhHHHHHHHHHHHHHHh
Q 024830 192 ASGGMPSSHSALCTALTTSVALCH 215 (262)
Q Consensus 192 ~SGGMPSSHSA~VsALATaIGl~e 215 (262)
...+|||.|++...++++.+++..
T Consensus 142 ~~~SFPSGHa~~a~a~a~~l~~~~ 165 (231)
T 1d2t_A 142 KNGSYPSGHTSIGWATALVLAEIN 165 (231)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHC
T ss_pred CCCCCChHHHHHHHHHHHHHHHHH
Confidence 567899999999999888877653
No 3
>1qi9_A Protein (vanadium bromoperoxidase); haloperoxidase, oxidoreductase; 2.05A {Ascophyllum nodosum} SCOP: a.111.1.2
Probab=42.58 E-value=25 Score=34.59 Aligned_cols=50 Identities=16% Similarity=0.094 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHh--cccchhhhh---------hcCCCCchhHHHHHHHHHHHHHHh
Q 024830 166 AWMIAQSTKVFLNFFVE--RKWDLRLLF---------ASGGMPSSHSALCTALTTSVALCH 215 (262)
Q Consensus 166 Aw~vAQ~iKvii~~l~~--rk~D~~~lf---------~SGGMPSSHSA~VsALATaIGl~e 215 (262)
+|.-.|++|.++.--+- ...+|..++ ....+||.|++...++++.+...-
T Consensus 373 ~~~~~~lLK~l~~RpRP~~~~~~~~~Ll~~~~~~~tp~~~SFPSGHAt~A~A~A~vL~~l~ 433 (556)
T 1qi9_A 373 LLENAELLKRVAAINAAQNPNNEVTYLLPQAIQEGSPTHPSYPSGHATQNGAFATVLKALI 433 (556)
T ss_dssp HHTCHHHHHHHHHHHHHHSGGGCCCCCCCBSSTTCSCSSCCSSCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHhhhccCCCCCCccccceeeecccccCCCCCCCCChHHHHHHHHHHHHHHHHH
Confidence 34445788988865432 112344443 345899999999999998886554
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=13.60 E-value=4.5e+02 Score=24.24 Aligned_cols=54 Identities=17% Similarity=0.216 Sum_probs=30.4
Q ss_pred HhcccchhhhhhcCCC----CchhHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhc
Q 024830 181 VERKWDLRLLFASGGM----PSSHSALCTALTTSVALCHGVADSLFPVCLGFSLIVMY 234 (262)
Q Consensus 181 ~~rk~D~~~lf~SGGM----PSSHSA~VsALATaIGl~eGf~SplFAIA~VfAlIVMY 234 (262)
+.++.|+..++..+|. +--+=+.+.|...+++...-..+--+-++++++.++-|
T Consensus 385 rr~~~~~~~l~~~~g~y~y~~g~n~~a~~a~~~G~~~~~~~~~~~~~~g~~va~v~Y~ 442 (501)
T 2jln_A 385 RRRRISLHDLYRTKGIYTYWRGVNWVALAVYAVALAVSFLTPDLMFVTGLIAALLLHI 442 (501)
T ss_dssp STTCCCHHHHTBSSSTTCTBTTBCHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHHH
T ss_pred hcccCChHHhhCCCCccccCCCCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 5667888888865553 33444555555555444433333345566666655544
No 5
>2o08_A BH1327 protein; putative HD superfamily hydrolase, structural genomics, JOIN for structural genomics, JCSG; HET: UNL PG4 DGI; 1.90A {Bacillus halodurans}
Probab=12.38 E-value=1.6e+02 Score=23.48 Aligned_cols=23 Identities=13% Similarity=0.073 Sum_probs=20.2
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCh
Q 024830 199 SHSALCTALTTSVALCHGVADSL 221 (262)
Q Consensus 199 SHSA~VsALATaIGl~eGf~Spl 221 (262)
-||--|+.+|..+|...|++...
T Consensus 21 ~Hs~~Va~~A~~lA~~~g~~~~~ 43 (188)
T 2o08_A 21 QHTIGVMETAIDLAKLYGADQQK 43 (188)
T ss_dssp HHHHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHHHHHHHHCcCHHH
Confidence 49999999999999999996543
No 6
>3ccg_A HD superfamily hydrolase; NP_347894.1, HD domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.50A {Clostridium acetobutylicum atcc 824}
Probab=11.68 E-value=1.7e+02 Score=23.31 Aligned_cols=23 Identities=13% Similarity=-0.088 Sum_probs=20.2
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCh
Q 024830 199 SHSALCTALTTSVALCHGVADSL 221 (262)
Q Consensus 199 SHSA~VsALATaIGl~eGf~Spl 221 (262)
.||--|+.+|..+|...|++...
T Consensus 22 ~Hs~~Va~~A~~lA~~~g~d~~~ 44 (190)
T 3ccg_A 22 KHSLGVMDTAVRLAGIYNEDTEK 44 (190)
T ss_dssp HHHHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHHHHHHHHCcCHHH
Confidence 39999999999999999987553
No 7
>2ogi_A Hypothetical protein SAG1661; structural genomics, joint center for structural genomics, J protein structure initiative; HET: GDP MES; 1.85A {Streptococcus agalactiae serogroup V}
Probab=10.91 E-value=1.8e+02 Score=23.35 Aligned_cols=23 Identities=13% Similarity=-0.006 Sum_probs=20.2
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCh
Q 024830 199 SHSALCTALTTSVALCHGVADSL 221 (262)
Q Consensus 199 SHSA~VsALATaIGl~eGf~Spl 221 (262)
.||--|+.+|..+|...|++...
T Consensus 29 ~Hs~~Va~~A~~lA~~~g~d~~~ 51 (196)
T 2ogi_A 29 NHVLGVERAAIELAERYGYDKEK 51 (196)
T ss_dssp HHHHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHHHHHHHHCcCHHH
Confidence 49999999999999999996543
No 8
>3gon_A Phosphomevalonate kinase; GHMP kinase superfamily, ATP-binding, nucleotide- binding, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A
Probab=10.44 E-value=5e+02 Score=21.32 Aligned_cols=47 Identities=17% Similarity=0.216 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHhcccchhh--hhhc---------CCCCchhHHHHHHHHHHHHHHhcCC
Q 024830 171 QSTKVFLNFFVERKWDLRL--LFAS---------GGMPSSHSALCTALTTSVALCHGVA 218 (262)
Q Consensus 171 Q~iKvii~~l~~rk~D~~~--lf~S---------GGMPSSHSA~VsALATaIGl~eGf~ 218 (262)
..+|.+..+++....+..- +.-+ +|+=|| +|+++|++.++.-..|..
T Consensus 68 ~~i~~~~~~l~~~~~~~~~~~i~I~s~lp~~~~~~GLgSS-aa~~va~~~al~~~~~~~ 125 (335)
T 3gon_A 68 ETIALMGDFLAVRGQNLRPFSLAIYGKMEREGKKFGLGSS-GSVVVLVVKALLALYNLS 125 (335)
T ss_dssp HHHHHHHHHHHHTTCCCCCEEEEEECCSEETTEECSSCHH-HHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHcCCCCCceEEEEEecCCcccCCCCcchH-HHHHHHHHHhhhhccccc
Confidence 4567777777654433321 1111 366666 666666666665444443
No 9
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=8.38 E-value=97 Score=22.79 Aligned_cols=24 Identities=21% Similarity=0.062 Sum_probs=17.3
Q ss_pred HhhhcccchhhhhhhhhhHHHHHH
Q 024830 230 LIVMYDAIGVRRHAGMQAEVTNIV 253 (262)
Q Consensus 230 lIVMYDA~GVRRaaGkQA~vLN~L 253 (262)
-||+|+..|.|..+.+=|..|.++
T Consensus 73 ~ivvyC~~g~r~~s~~a~~~L~~~ 96 (124)
T 3flh_A 73 TYVVYDWTGGTTLGKTALLVLLSA 96 (124)
T ss_dssp EEEEECSSSSCSHHHHHHHHHHHH
T ss_pred eEEEEeCCCCchHHHHHHHHHHHc
Confidence 589999999995555556666544
No 10
>3uqs_A RNA-dependent RNA polymerase; transferase; 2.00A {Murine norovirus} PDB: 3ur0_A* 3upf_A* 3sfg_A* 3nah_A 3nai_A 3qid_A* 3sfu_A*
Probab=8.27 E-value=1e+02 Score=29.40 Aligned_cols=16 Identities=19% Similarity=0.414 Sum_probs=13.0
Q ss_pred hhhcCCCCchhHHHHH
Q 024830 190 LFASGGMPSSHSALCT 205 (262)
Q Consensus 190 lf~SGGMPSSHSA~Vs 205 (262)
....|||||.|..++.
T Consensus 292 ~~v~gG~PSG~p~Tsi 307 (515)
T 3uqs_A 292 IVVEEGLPSGCPCTTQ 307 (515)
T ss_dssp EEECSSCCCCSTHHHH
T ss_pred EEEcCCccCCCcceee
Confidence 4578999999987765
Done!