Query 024830
Match_columns 262
No_of_seqs 119 out of 337
Neff 2.7
Searched_HMMs 13730
Date Mon Mar 25 15:08:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024830.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/024830hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1d2ta_ a.111.1.1 (A:) Bacteri 69.8 1.5 0.00011 35.8 3.3 25 192-216 136-160 (224)
2 d1kqpa_ c.26.2.1 (A:) NH3-depe 14.1 63 0.0046 26.2 3.5 48 171-218 24-71 (271)
3 d1s4ea1 d.14.1.5 (A:5-180) Gal 12.9 1.1E+02 0.0082 21.6 4.3 32 193-225 97-128 (176)
4 d1sh0a_ e.8.1.4 (A:) Viral RNA 11.5 27 0.002 30.7 0.4 14 192-205 289-302 (502)
5 d1piea1 d.14.1.5 (A:9-213) Gal 11.0 2.2E+02 0.016 20.9 5.7 28 194-222 126-153 (205)
6 d1v54i_ f.23.3.1 (I:) Mitochon 9.5 1.1E+02 0.0081 21.4 3.1 39 140-178 2-40 (73)
7 d1rh1a2 f.1.1.1 (A:313-511) Co 9.4 1E+02 0.0076 24.9 3.3 45 178-224 121-172 (199)
8 d1iwga7 f.35.1.1 (A:7-37,A:331 9.4 3.4E+02 0.025 20.0 8.4 40 178-217 119-158 (199)
9 d1ra6a_ e.8.1.4 (A:) Viral RNA 9.4 83 0.006 27.0 2.8 20 192-211 282-303 (461)
10 d1zoqc1 a.153.1.1 (C:2065-2111 9.2 96 0.007 20.1 2.4 18 148-165 20-37 (47)
No 1
>d1d2ta_ a.111.1.1 (A:) Bacterial acid phosphatase {Escherichia blattae [TaxId: 563]}
Probab=69.82 E-value=1.5 Score=35.75 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=20.3
Q ss_pred hcCCCCchhHHHHHHHHHHHHHHhc
Q 024830 192 ASGGMPSSHSALCTALTTSVALCHG 216 (262)
Q Consensus 192 ~SGGMPSSHSA~VsALATaIGl~eG 216 (262)
.++.+||.|++...++++.++....
T Consensus 136 ~~~SfPSGHa~~a~~~a~~la~~~p 160 (224)
T d1d2ta_ 136 KNGSYPSGHTSIGWATALVLAEINP 160 (224)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHCG
T ss_pred CCCCcCchhHHHHHHHHHHHHHHhH
Confidence 5789999999988888887776543
No 2
>d1kqpa_ c.26.2.1 (A:) NH3-dependent NAD+-synthetase {Bacillus subtilis [TaxId: 1423]}
Probab=14.12 E-value=63 Score=26.16 Aligned_cols=48 Identities=15% Similarity=0.070 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhcccchhhhhhcCCCCchhHHHHHHHHHHHHHHhcCC
Q 024830 171 QSTKVFLNFFVERKWDLRLLFASGGMPSSHSALCTALTTSVALCHGVA 218 (262)
Q Consensus 171 Q~iKvii~~l~~rk~D~~~lf~SGGMPSSHSA~VsALATaIGl~eGf~ 218 (262)
..+..+-.|++.-+..--.+=-|||.=|+-+|.+++.|...-..+|..
T Consensus 24 ~~v~~lrdy~~ksg~~gvvvglSGGIDSAv~a~L~~~A~~~~~~~~g~ 71 (271)
T d1kqpa_ 24 DRVNFLKQYVKKTGAKGFVLGISGGQDSTLAGRLAQLAVESIREEGGD 71 (271)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECCSSHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhCCCeEEEECCCCHHHHHHHHHHHHHHHHHHHhcCC
Confidence 334556677765444444455899999999988888887655555443
No 3
>d1s4ea1 d.14.1.5 (A:5-180) Galactokinase {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=12.90 E-value=1.1e+02 Score=21.64 Aligned_cols=32 Identities=9% Similarity=0.099 Sum_probs=23.2
Q ss_pred cCCCCchhHHHHHHHHHHHHHHhcCCCChhHHH
Q 024830 193 SGGMPSSHSALCTALTTSVALCHGVADSLFPVC 225 (262)
Q Consensus 193 SGGMPSSHSA~VsALATaIGl~eGf~SplFAIA 225 (262)
-.|| ||-||+++|++.++.--.|..-+-.-++
T Consensus 97 gsGL-gSSAAl~va~~~al~~~~~~~~~~~~l~ 128 (176)
T d1s4ea1 97 GAGL-SSSASFEVGILEVLNQLYNLNIDPLKKA 128 (176)
T ss_dssp TSSS-CHHHHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred Cccc-cchHHHHHHHHHHHHHHhhccCCHHHHH
Confidence 3467 7789999999888888777765544433
No 4
>d1sh0a_ e.8.1.4 (A:) Viral RNA polymerase {Norwalk virus [TaxId: 11983]}
Probab=11.51 E-value=27 Score=30.68 Aligned_cols=14 Identities=21% Similarity=0.396 Sum_probs=11.8
Q ss_pred hcCCCCchhHHHHH
Q 024830 192 ASGGMPSSHSALCT 205 (262)
Q Consensus 192 ~SGGMPSSHSA~Vs 205 (262)
..|||||.|..++.
T Consensus 289 v~gGlPSG~p~Tsi 302 (502)
T d1sh0a_ 289 INEGLPSGVPCTSQ 302 (502)
T ss_dssp ECSSCCTTSTTHHH
T ss_pred EeCCCCCCCceeee
Confidence 56999999988775
No 5
>d1piea1 d.14.1.5 (A:9-213) Galactokinase {Lactococcus lactis [TaxId: 1358]}
Probab=11.01 E-value=2.2e+02 Score=20.87 Aligned_cols=28 Identities=14% Similarity=0.115 Sum_probs=20.4
Q ss_pred CCCCchhHHHHHHHHHHHHHHhcCCCChh
Q 024830 194 GGMPSSHSALCTALTTSVALCHGVADSLF 222 (262)
Q Consensus 194 GGMPSSHSA~VsALATaIGl~eGf~SplF 222 (262)
.|| ||-||+++|++.++..-.|..=+.-
T Consensus 126 sGL-gSSAAl~va~~~al~~~~~~~~~~~ 153 (205)
T d1piea1 126 SGL-SSSASLELLVGVVLDDLFNLNVPRL 153 (205)
T ss_dssp SSS-CHHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred ccc-CccHHHHHHHHHHHHHHhCCCCCHH
Confidence 344 5668999999999888877764433
No 6
>d1v54i_ f.23.3.1 (I:) Mitochondrial cytochrome c oxidase subunit VIc {Cow (Bos taurus) [TaxId: 9913]}
Probab=9.51 E-value=1.1e+02 Score=21.37 Aligned_cols=39 Identities=15% Similarity=-0.004 Sum_probs=33.4
Q ss_pred cccccccccHHHHHHhcChhHHHHHHHHHHHHHHHHHHH
Q 024830 140 TSTAKVKISPFVATLAANPTFVSGLFAWMIAQSTKVFLN 178 (262)
Q Consensus 140 ~~~a~~~ms~~l~~Ll~N~vLiaAliAw~vAQ~iKvii~ 178 (262)
++.||-.|-..+..-+.-.+.++-++++.+|-..|+.+.
T Consensus 2 ~~l~KPqmrGLl~~~lk~hl~~a~~lsl~~a~~~Kf~v~ 40 (73)
T d1v54i_ 2 TALAKPQMRGLLARRLRFHIVGAFMVSLGFATFYKFAVA 40 (73)
T ss_dssp CCCCCCCCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred CCccchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456788888888888888889999999999999998875
No 7
>d1rh1a2 f.1.1.1 (A:313-511) Colicin B C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=9.39 E-value=1e+02 Score=24.88 Aligned_cols=45 Identities=16% Similarity=0.203 Sum_probs=26.4
Q ss_pred HHHHhcccchhhhh------hcCCCCchhHHHHHHHHHH-HHHHhcCCCChhHH
Q 024830 178 NFFVERKWDLRLLF------ASGGMPSSHSALCTALTTS-VALCHGVADSLFPV 224 (262)
Q Consensus 178 ~~l~~rk~D~~~lf------~SGGMPSSHSA~VsALATa-IGl~eGf~SplFAI 224 (262)
+-+.++ ||+.|| .-||+-+.-++++.+.+++ .-..-|+.++.+++
T Consensus 121 ~g~eTg--NWrPl~vk~Et~a~~~~At~v~~~~fs~~~g~~~~~~g~~~t~vgi 172 (199)
T d1rh1a2 121 EGYQTG--NWGPLMLEVESWVISGMASAVALSLFSLTLGSALIAFGLSATVVGF 172 (199)
T ss_dssp HHHSSS--CCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHhhCC--CchhHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHhhhHHHH
Confidence 334455 555554 6688887777767666663 33344666555554
No 8
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=9.36 E-value=3.4e+02 Score=20.02 Aligned_cols=40 Identities=8% Similarity=-0.077 Sum_probs=29.2
Q ss_pred HHHHhcccchhhhhhcCCCCchhHHHHHHHHHHHHHHhcC
Q 024830 178 NFFVERKWDLRLLFASGGMPSSHSALCTALTTSVALCHGV 217 (262)
Q Consensus 178 ~~l~~rk~D~~~lf~SGGMPSSHSA~VsALATaIGl~eGf 217 (262)
...++++.|.++-...+...-..+-+.++++|.+|+---+
T Consensus 119 ~~~~~~g~~~~eAi~~a~~~~g~~i~~s~lTt~~~f~~l~ 158 (199)
T d1iwga7 119 RVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVPMA 158 (199)
T ss_dssp HHHHHTSCCSHHHHHHGGGTHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHhcCCCHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHh
Confidence 3344556677776777777777888899999999987644
No 9
>d1ra6a_ e.8.1.4 (A:) Viral RNA polymerase {Poliovirus type 1, strain Mahoney [TaxId: 12080]}
Probab=9.35 E-value=83 Score=27.04 Aligned_cols=20 Identities=30% Similarity=0.567 Sum_probs=13.4
Q ss_pred hcCCCCchhHHHHH--HHHHHH
Q 024830 192 ASGGMPSSHSALCT--ALTTSV 211 (262)
Q Consensus 192 ~SGGMPSSHSA~Vs--ALATaI 211 (262)
-.|||||.|.+++. ++.-.+
T Consensus 282 v~~GlPSG~~~T~iiNSi~N~i 303 (461)
T d1ra6a_ 282 VKGGMPSGCSGTSIFNSMINNL 303 (461)
T ss_dssp EESCCCTBSTTHHHHHHHHHHH
T ss_pred ECCCCCCCCCeeEeehhHHHHH
Confidence 67999999955543 444433
No 10
>d1zoqc1 a.153.1.1 (C:2065-2111) Nuclear receptor coactivator CBP/p300 ibid domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=9.20 E-value=96 Score=20.07 Aligned_cols=18 Identities=17% Similarity=0.469 Sum_probs=14.7
Q ss_pred cHHHHHHhcChhHHHHHH
Q 024830 148 SPFVATLAANPTFVSGLF 165 (262)
Q Consensus 148 s~~l~~Ll~N~vLiaAli 165 (262)
.+++..|-+|+.|++|++
T Consensus 20 qQvL~ILksNP~lmaaFI 37 (47)
T d1zoqc1 20 QQVLNILKSNPQLMAAFI 37 (47)
T ss_dssp HHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHcCHHHHHHHH
Confidence 357888889999998876
Done!