BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024831
(262 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3AGZ|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
pdb|3AGZ|B Chain B, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
Length = 190
Score = 171 bits (434), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 83/181 (45%), Positives = 126/181 (69%), Gaps = 1/181 (0%)
Query: 83 RKAAPIERTLPCSLEDLYKGTTKKMKISRDVIDASGRPNTTEE-ILTIEIKPGWKKGTKI 141
++ P+ L SLE++Y G TKKMKIS ++ G+ E+ ILTIE+K GWK+GTKI
Sbjct: 9 KQDPPVTHDLRVSLEEIYSGCTKKMKISHKRLNPDGKSIRNEDKILTIEVKKGWKEGTKI 68
Query: 142 TFPEKGNELRNVIPSDLIFIIDEKPHSLFKRDGNDLVVTQKISLVEALTGYTVQLTTLDG 201
TFP++G++ N IP+D++F++ +KPH++FKRDG+D++ +ISL EAL G TV + TLDG
Sbjct: 69 TFPKEGDQTSNNIPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDG 128
Query: 202 RTLTVPINSVISPTYEEVIKGEGMPIPKEPSKRGNLRIKFNIKFPSKLTTEQKSGLKRLI 261
RT+ V VI P + GEG+P+PK P KRG+L I+F + FP ++ ++ L++++
Sbjct: 129 RTIPVVFKDVIRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPERIPQTSRTVLEQVL 188
Query: 262 P 262
P
Sbjct: 189 P 189
>pdb|2QLD|A Chain A, Human Hsp40 Hdj1
Length = 183
Score = 171 bits (433), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 83/181 (45%), Positives = 126/181 (69%), Gaps = 1/181 (0%)
Query: 83 RKAAPIERTLPCSLEDLYKGTTKKMKISRDVIDASGRPNTTEE-ILTIEIKPGWKKGTKI 141
++ P+ L SLE++Y G TKKMKIS ++ G+ E+ ILTIE+K GWK+GTKI
Sbjct: 2 KQDPPVTHDLRVSLEEIYSGCTKKMKISHKRLNPDGKSIRNEDKILTIEVKKGWKEGTKI 61
Query: 142 TFPEKGNELRNVIPSDLIFIIDEKPHSLFKRDGNDLVVTQKISLVEALTGYTVQLTTLDG 201
TFP++G++ N IP+D++F++ +KPH++FKRDG+D++ +ISL EAL G TV + TLDG
Sbjct: 62 TFPKEGDQTSNNIPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDG 121
Query: 202 RTLTVPINSVISPTYEEVIKGEGMPIPKEPSKRGNLRIKFNIKFPSKLTTEQKSGLKRLI 261
RT+ V VI P + GEG+P+PK P KRG+L I+F + FP ++ ++ L++++
Sbjct: 122 RTIPVVFKDVIRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPERIPQTSRTVLEQVL 181
Query: 262 P 262
P
Sbjct: 182 P 182
>pdb|3AGX|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain
pdb|3AGX|B Chain B, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain
pdb|3AGY|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
pdb|3AGY|B Chain B, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
Length = 181
Score = 171 bits (433), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 83/177 (46%), Positives = 124/177 (70%), Gaps = 1/177 (0%)
Query: 87 PIERTLPCSLEDLYKGTTKKMKISRDVIDASGRPNTTEE-ILTIEIKPGWKKGTKITFPE 145
P+ L SLE++Y G TKKMKIS ++ G+ E+ ILTIE+K GWK+GTKITFP+
Sbjct: 4 PVTHDLRVSLEEIYSGCTKKMKISHKRLNPDGKSIRNEDKILTIEVKKGWKEGTKITFPK 63
Query: 146 KGNELRNVIPSDLIFIIDEKPHSLFKRDGNDLVVTQKISLVEALTGYTVQLTTLDGRTLT 205
+G++ N IP+D++F++ +KPH++FKRDG+D++ +ISL EAL G TV + TLDGRT+
Sbjct: 64 EGDQTSNNIPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDGRTIP 123
Query: 206 VPINSVISPTYEEVIKGEGMPIPKEPSKRGNLRIKFNIKFPSKLTTEQKSGLKRLIP 262
V VI P + GEG+P+PK P KRG+L I+F + FP ++ ++ L++++P
Sbjct: 124 VVFKDVIRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPERIPQTSRTVLEQVLP 180
>pdb|2Q2G|A Chain A, Crystal Structure Of Dimerization Domain Of Hsp40 From
Cryptosporidium Parvum, Cgd2_1800
pdb|2Q2G|B Chain B, Crystal Structure Of Dimerization Domain Of Hsp40 From
Cryptosporidium Parvum, Cgd2_1800
Length = 180
Score = 129 bits (323), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 74/178 (41%), Positives = 106/178 (59%), Gaps = 6/178 (3%)
Query: 85 AAPIERTLP--CSLEDLYKGTTKKMKISRD-VIDASGRPNTTEEILTIEIKPGWKKGTKI 141
AP +P +LE+LY G KK+K++R I+ R E I+ +EIKPGWK GTK+
Sbjct: 1 GAPRSHEVPLLVTLEELYLGKRKKIKVTRKRFIEHKVR--NEENIVEVEIKPGWKDGTKL 58
Query: 142 TFPEKGN-ELRNVIPSDLIFIIDEKPHSLFKRDGNDLVVTQKISLVEALTGYTVQLTTLD 200
T+ +G+ E P DL+ II K H F RD L+ I LV ALTG+T +TTLD
Sbjct: 59 TYSGEGDQESPGTSPGDLVLIIQTKTHPRFTRDDCHLIXKVTIPLVRALTGFTCPVTTLD 118
Query: 201 GRTLTVPINSVISPTYEEVIKGEGMPIPKEPSKRGNLRIKFNIKFPSKLTTEQKSGLK 258
R L +PI +++P +++ EG PI +P ++G+L ++F+I FP LT EQK +K
Sbjct: 119 NRNLQIPIKEIVNPKTRKIVPNEGXPIKNQPGQKGDLILEFDICFPKSLTPEQKKLIK 176
>pdb|2B26|A Chain A, The Crystal Structure Of The Protein Complex Of Yeast
Hsp40 Sis1 And Hsp70 Ssa1
pdb|2B26|B Chain B, The Crystal Structure Of The Protein Complex Of Yeast
Hsp40 Sis1 And Hsp70 Ssa1
pdb|2B26|C Chain C, The Crystal Structure Of The Protein Complex Of Yeast
Hsp40 Sis1 And Hsp70 Ssa1
Length = 173
Score = 122 bits (306), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 68/171 (39%), Positives = 98/171 (57%), Gaps = 5/171 (2%)
Query: 88 IERTLPCSLEDLYKGTTKKMKISRDVIDASGRPNTTEEILTIEIKPGWKKGTKITFPEKG 147
++ LP SLEDL+ G K KI R G T+ + I++KPGWK GTKIT+ +G
Sbjct: 3 VQVNLPVSLEDLFVGKKKSFKIGRK--GPHGASEKTQ--IDIQLKPGWKAGTKITYKNQG 58
Query: 148 N-ELRNVIPSDLIFIIDEKPHSLFKRDGNDLVVTQKISLVEALTGYTVQLTTLDGRTLTV 206
+ + L F+I EK H FKRDG+DL+ T +S E+L G++ + T+DGRTL +
Sbjct: 59 DYNPQTGRRKTLQFVIQEKSHPNFKRDGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLPL 118
Query: 207 PINSVISPTYEEVIKGEGMPIPKEPSKRGNLRIKFNIKFPSKLTTEQKSGL 257
+ P+ G+GMP PK PS+RGNL +K+ + +P L QK +
Sbjct: 119 SRVQPVQPSQTSTYPGQGMPTPKNPSQRGNLIVKYKVDYPISLNDAQKRAI 169
>pdb|1C3G|A Chain A, S. Cerevisiae Heat Shock Protein 40 Sis1
Length = 170
Score = 122 bits (305), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 68/171 (39%), Positives = 98/171 (57%), Gaps = 5/171 (2%)
Query: 88 IERTLPCSLEDLYKGTTKKMKISRDVIDASGRPNTTEEILTIEIKPGWKKGTKITFPEKG 147
++ LP SLEDL+ G K KI R G T+ + I++KPGWK GTKIT+ +G
Sbjct: 3 VQVNLPVSLEDLFVGKKKSFKIGRK--GPHGASEKTQ--IDIQLKPGWKAGTKITYKNQG 58
Query: 148 N-ELRNVIPSDLIFIIDEKPHSLFKRDGNDLVVTQKISLVEALTGYTVQLTTLDGRTLTV 206
+ + L F+I EK H FKRDG+DL+ T +S E+L G++ + T+DGRTL +
Sbjct: 59 DYNPQTGRRKTLQFVIQEKSHPNFKRDGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLPL 118
Query: 207 PINSVISPTYEEVIKGEGMPIPKEPSKRGNLRIKFNIKFPSKLTTEQKSGL 257
+ P+ G+GMP PK PS+RGNL +K+ + +P L QK +
Sbjct: 119 SRVQPVQPSQTSTYPGQGMPTPKNPSQRGNLIVKYKVDYPISLNDAQKRAI 169
>pdb|1NLT|A Chain A, The Crystal Structure Of Hsp40 Ydj1
Length = 248
Score = 105 bits (261), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 63/159 (39%), Positives = 91/159 (57%), Gaps = 12/159 (7%)
Query: 112 DVIDASGRPNTT--------EEILTIEIKPGWKKGTKITFPEKGNELRNVIPSDLIFIID 163
D+ID R + +IL + ++PG K G +I F + ++ +VIP D++FI+
Sbjct: 91 DIIDPKDRCKSCNGKKVENERKILEVHVEPGMKDGQRIVFKGEADQAPDVIPGDVVFIVS 150
Query: 164 EKPHSLFKRDGNDLVVTQKISLVEALTGYTVQLTTLDGRTLTVPI--NSVISPTYEEVIK 221
E+PH FKRDG+DLV +I L+ A+ G L + G L V I VI+P +VI+
Sbjct: 151 ERPHKSFKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIE 210
Query: 222 GEGMPIPKEPSKRGNLRIKFNIKFPSKLTTEQKSGLKRL 260
G+GMPIPK GNL IKF IK P T +++ LK+L
Sbjct: 211 GKGMPIPKY-GGYGNLIIKFTIKDPENHFTSEEN-LKKL 247
Score = 27.3 bits (59), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 83 RKAAPIERTLPCSLEDLYKGTTKKMKISRDVI--DASGR 119
++ I+ + SLE+LYKG T K+ +++ ++ + GR
Sbjct: 9 QRGKDIKHEISASLEELYKGRTAKLALNKQILCKECEGR 47
>pdb|1XAO|A Chain A, Hsp40-Ydj1 Dimerization Domain
pdb|1XAO|B Chain B, Hsp40-Ydj1 Dimerization Domain
Length = 121
Score = 67.8 bits (164), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 43/93 (46%), Positives = 56/93 (60%), Gaps = 4/93 (4%)
Query: 170 FKRDGNDLVVTQKISLVEALTGYTVQLTTLDGRTLTVPI--NSVISPTYEEVIKGEGMPI 227
FKRDG+DLV +I L+ A+ G L + G L V I VI+P +VI+G+GMPI
Sbjct: 2 FKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPI 61
Query: 228 PKEPSKRGNLRIKFNIKFPSKLTTEQKSGLKRL 260
PK GNL IKF IKFP T +++ LK+L
Sbjct: 62 PKY-GGYGNLIIKFTIKFPENHFTSEEN-LKKL 92
>pdb|2VUG|A Chain A, The Structure Of An Archaeal Homodimeric Rna Ligase
pdb|2VUG|B Chain B, The Structure Of An Archaeal Homodimeric Rna Ligase
Length = 389
Score = 31.2 bits (69), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 95 SLEDLYKGTTKKMKISRDVIDASGRPNTTEEILTIE-IKPGWKKGTKITFPEKGNELRNV 153
+ +L+K K+++ + ++ + EI+ IE IK GW+ K +P+ NE+R +
Sbjct: 322 DIHELFKVRVKRIETAYKMVTHFEKLGLKIEIVDIEEIKDGWRITFKRLYPDATNEIREL 381
Query: 154 I 154
I
Sbjct: 382 I 382
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.135 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,001,576
Number of Sequences: 62578
Number of extensions: 293716
Number of successful extensions: 571
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 548
Number of HSP's gapped (non-prelim): 14
length of query: 262
length of database: 14,973,337
effective HSP length: 97
effective length of query: 165
effective length of database: 8,903,271
effective search space: 1469039715
effective search space used: 1469039715
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.9 bits)