Query 024831
Match_columns 262
No_of_seqs 232 out of 1771
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 07:44:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024831.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024831hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0484 DnaJ DnaJ-class molecu 100.0 1.1E-46 2.4E-51 345.3 25.1 180 80-261 110-348 (371)
2 PTZ00037 DnaJ_C chaperone prot 100.0 2.2E-45 4.7E-50 346.5 24.4 181 82-262 120-365 (421)
3 PRK14296 chaperone protein Dna 100.0 4.3E-44 9.2E-49 333.9 25.2 179 82-261 119-359 (372)
4 PRK14286 chaperone protein Dna 100.0 4E-43 8.6E-48 327.5 27.1 179 82-261 120-355 (372)
5 PRK14295 chaperone protein Dna 100.0 5.2E-43 1.1E-47 328.3 26.0 179 81-261 135-370 (389)
6 PRK14285 chaperone protein Dna 100.0 1E-42 2.2E-47 324.0 27.4 179 82-261 116-351 (365)
7 PRK14277 chaperone protein Dna 100.0 9.7E-43 2.1E-47 326.4 26.9 178 82-261 125-363 (386)
8 PRK14281 chaperone protein Dna 100.0 1.7E-42 3.7E-47 325.7 28.2 178 82-261 133-370 (397)
9 PRK14288 chaperone protein Dna 100.0 4.9E-43 1.1E-47 326.6 23.5 179 82-261 110-343 (369)
10 PRK14297 chaperone protein Dna 100.0 1.3E-42 2.9E-47 325.0 26.4 179 82-262 118-357 (380)
11 PRK14278 chaperone protein Dna 100.0 1.2E-42 2.7E-47 324.8 26.0 179 82-261 109-348 (378)
12 PRK14276 chaperone protein Dna 100.0 3.6E-42 7.8E-47 322.0 26.5 178 82-261 116-354 (380)
13 PRK14279 chaperone protein Dna 100.0 2.5E-42 5.4E-47 324.0 24.6 178 81-261 142-376 (392)
14 PRK14280 chaperone protein Dna 100.0 4.3E-42 9.4E-47 321.0 25.5 178 82-261 113-351 (376)
15 PRK14298 chaperone protein Dna 100.0 3.9E-42 8.5E-47 321.2 25.0 178 82-261 111-349 (377)
16 PRK14284 chaperone protein Dna 100.0 4.2E-42 9.1E-47 322.6 25.2 179 82-261 128-364 (391)
17 PRK14287 chaperone protein Dna 100.0 8.5E-42 1.8E-46 318.5 27.0 178 82-261 108-346 (371)
18 PRK14299 chaperone protein Dna 100.0 2.3E-41 5.1E-46 306.3 27.0 159 82-261 126-284 (291)
19 PRK14291 chaperone protein Dna 100.0 5.1E-41 1.1E-45 314.4 27.0 179 82-261 126-368 (382)
20 PRK14294 chaperone protein Dna 100.0 1.1E-40 2.4E-45 310.6 25.3 178 82-261 114-348 (366)
21 PRK14282 chaperone protein Dna 100.0 1.1E-40 2.4E-45 310.9 25.3 179 82-261 122-361 (369)
22 TIGR02349 DnaJ_bact chaperone 100.0 1.2E-40 2.6E-45 309.2 25.2 179 82-262 113-352 (354)
23 PRK14290 chaperone protein Dna 100.0 2E-40 4.4E-45 308.8 26.2 177 83-262 120-355 (365)
24 PRK10767 chaperone protein Dna 100.0 2.2E-40 4.8E-45 309.2 24.7 178 82-261 112-346 (371)
25 PRK10266 curved DNA-binding pr 100.0 9.8E-40 2.1E-44 297.6 25.7 176 82-261 114-291 (306)
26 PRK14301 chaperone protein Dna 100.0 4E-40 8.7E-45 307.4 23.6 178 82-261 114-348 (373)
27 PRK14292 chaperone protein Dna 100.0 2.1E-39 4.6E-44 302.6 24.8 177 82-261 109-346 (371)
28 PRK14300 chaperone protein Dna 100.0 1.7E-39 3.6E-44 303.3 23.5 178 83-261 116-350 (372)
29 PRK14283 chaperone protein Dna 100.0 1.7E-38 3.7E-43 297.1 23.6 178 82-261 116-354 (378)
30 PRK14293 chaperone protein Dna 100.0 1.6E-38 3.5E-43 296.8 22.1 179 82-261 113-352 (374)
31 PRK14289 chaperone protein Dna 100.0 1.1E-37 2.3E-42 292.5 22.9 178 82-261 124-362 (386)
32 TIGR03835 termin_org_DnaJ term 100.0 2.8E-36 6.2E-41 293.3 20.7 159 85-247 656-816 (871)
33 KOG0712 Molecular chaperone (D 100.0 8.9E-36 1.9E-40 270.1 17.8 175 84-261 99-337 (337)
34 PF01556 CTDII: DnaJ C termina 99.9 4.5E-24 9.7E-29 158.1 8.5 81 176-256 1-81 (81)
35 KOG0714 Molecular chaperone (D 99.4 7.9E-12 1.7E-16 111.3 14.9 144 84-227 158-305 (306)
36 KOG0713 Molecular chaperone (D 99.4 1.4E-13 3E-18 124.5 2.4 170 82-251 123-328 (336)
37 PRK14282 chaperone protein Dna 99.1 9.1E-11 2E-15 109.9 8.1 87 82-180 272-359 (369)
38 PRK14290 chaperone protein Dna 99.0 4.9E-10 1.1E-14 104.8 7.7 85 83-180 267-352 (365)
39 PF01556 CTDII: DnaJ C termina 99.0 2.7E-10 5.8E-15 84.2 4.7 72 87-170 1-74 (81)
40 PRK14299 chaperone protein Dna 99.0 1.1E-09 2.3E-14 99.6 9.4 70 171-248 126-195 (291)
41 PRK14294 chaperone protein Dna 99.0 9.9E-10 2.2E-14 102.8 7.7 86 82-180 260-346 (366)
42 PRK14285 chaperone protein Dna 99.0 1E-09 2.3E-14 102.6 7.8 85 82-178 262-347 (365)
43 PRK14284 chaperone protein Dna 98.9 2.1E-09 4.6E-14 101.4 7.6 85 82-178 274-360 (391)
44 PRK10767 chaperone protein Dna 98.9 2.2E-09 4.9E-14 100.6 7.5 86 82-180 258-344 (371)
45 PRK14298 chaperone protein Dna 98.9 2.2E-09 4.9E-14 100.8 7.1 86 82-180 261-347 (377)
46 TIGR02349 DnaJ_bact chaperone 98.9 3.8E-09 8.2E-14 98.5 7.5 83 82-177 263-346 (354)
47 PRK14287 chaperone protein Dna 98.9 4.1E-09 8.8E-14 98.9 7.4 84 82-178 258-342 (371)
48 PRK10266 curved DNA-binding pr 98.9 1.1E-08 2.3E-13 93.7 9.7 74 172-247 115-201 (306)
49 PRK14300 chaperone protein Dna 98.9 5.6E-09 1.2E-13 98.0 8.1 82 82-175 261-343 (372)
50 PRK14291 chaperone protein Dna 98.9 1.2E-08 2.5E-13 96.2 9.5 75 82-168 271-346 (382)
51 PRK14279 chaperone protein Dna 98.8 6.5E-09 1.4E-13 98.1 7.8 78 82-172 289-366 (392)
52 PRK14301 chaperone protein Dna 98.8 7.3E-09 1.6E-13 97.2 7.6 84 82-178 260-344 (373)
53 PRK14295 chaperone protein Dna 98.8 1.1E-08 2.4E-13 96.5 8.0 78 82-171 282-359 (389)
54 PRK14288 chaperone protein Dna 98.8 1.1E-08 2.4E-13 95.9 7.8 83 82-176 254-337 (369)
55 PRK14293 chaperone protein Dna 98.8 9.6E-09 2.1E-13 96.5 6.5 86 82-180 263-350 (374)
56 PRK14289 chaperone protein Dna 98.8 2.2E-08 4.8E-13 94.4 8.3 56 202-258 227-282 (386)
57 PRK14286 chaperone protein Dna 98.8 2.2E-08 4.7E-13 94.0 7.9 84 82-177 266-350 (372)
58 PRK14276 chaperone protein Dna 98.7 2.2E-08 4.7E-13 94.3 7.4 79 82-173 266-345 (380)
59 PRK14292 chaperone protein Dna 98.7 2.2E-08 4.8E-13 93.9 6.8 83 82-177 258-341 (371)
60 PRK14280 chaperone protein Dna 98.7 3.5E-08 7.6E-13 92.7 7.7 78 82-172 263-341 (376)
61 PRK14281 chaperone protein Dna 98.7 3.9E-08 8.4E-13 93.1 7.4 78 82-172 282-360 (397)
62 PRK14278 chaperone protein Dna 98.6 7.4E-08 1.6E-12 90.6 8.1 79 82-172 259-338 (378)
63 PRK14297 chaperone protein Dna 98.6 5.6E-08 1.2E-12 91.5 7.3 77 83-172 269-346 (380)
64 COG0484 DnaJ DnaJ-class molecu 98.6 5.9E-08 1.3E-12 90.1 6.5 83 82-177 260-343 (371)
65 PRK14283 chaperone protein Dna 98.6 1.2E-07 2.5E-12 89.3 7.8 74 83-169 267-341 (378)
66 PRK14277 chaperone protein Dna 98.6 1.1E-07 2.4E-12 89.7 7.5 76 83-171 276-352 (386)
67 PTZ00037 DnaJ_C chaperone prot 98.6 2.6E-07 5.7E-12 88.0 8.9 74 82-167 270-347 (421)
68 PRK14296 chaperone protein Dna 98.5 1.8E-07 3.9E-12 87.8 7.3 75 85-172 273-349 (372)
69 KOG0715 Molecular chaperone (D 98.5 3.3E-07 7.1E-12 83.2 7.6 96 85-187 137-288 (288)
70 TIGR03835 termin_org_DnaJ term 98.4 7.8E-07 1.7E-11 88.6 8.4 72 82-166 742-813 (871)
71 KOG0712 Molecular chaperone (D 97.1 0.0017 3.6E-08 60.0 7.3 74 83-168 249-324 (337)
72 COG2214 CbpA DnaJ-class molecu 90.3 0.87 1.9E-05 38.0 6.3 78 87-177 150-227 (237)
73 PF12991 DUF3875: Domain of un 63.9 8.6 0.00019 26.0 2.8 25 233-257 26-52 (54)
74 cd02639 R3H_RRM R3H domain of 50.0 21 0.00044 24.7 2.9 21 240-260 17-37 (60)
75 PF12791 RsgI_N: Anti-sigma fa 38.9 80 0.0017 20.9 4.5 37 190-226 4-40 (56)
76 PF02736 Myosin_N: Myosin N-te 38.3 87 0.0019 19.7 4.3 35 170-207 5-39 (42)
77 COG2214 CbpA DnaJ-class molecu 32.5 1.4E+02 0.0031 24.3 6.1 69 176-247 150-218 (237)
78 cd03577 NTR_TIMP_like NTR doma 31.3 2E+02 0.0043 21.8 6.3 93 153-260 12-112 (116)
79 cd06007 R3H_DEXH_helicase R3H 30.5 59 0.0013 22.3 2.7 20 241-260 17-36 (59)
80 COG1470 Predicted membrane pro 29.8 5.5E+02 0.012 25.3 10.8 97 85-199 8-105 (513)
81 PF11197 DUF2835: Protein of u 29.3 1.5E+02 0.0032 21.0 4.7 31 178-208 2-37 (68)
82 PF03803 Scramblase: Scramblas 27.3 59 0.0013 27.8 2.9 20 240-259 190-209 (221)
83 KOG0621 Phospholipid scramblas 26.9 5E+02 0.011 23.8 9.4 107 123-259 162-269 (292)
84 cd02641 R3H_Smubp-2_like R3H d 26.3 71 0.0015 21.9 2.6 20 241-260 18-37 (60)
85 COG3128 PiuC Uncharacterized i 25.6 3.1E+02 0.0068 23.7 6.7 66 169-241 111-176 (229)
86 cd02640 R3H_NRF R3H domain of 25.5 80 0.0017 21.7 2.7 20 241-260 18-37 (60)
87 TIGR00013 taut 4-oxalocrotonat 25.2 89 0.0019 20.8 2.9 22 238-260 2-23 (63)
88 PF08774 VRR_NUC: VRR-NUC doma 23.6 1.1E+02 0.0024 22.6 3.5 24 237-260 62-86 (100)
89 PF02963 EcoRI: Restriction en 23.4 27 0.00057 30.5 -0.0 37 193-229 162-199 (257)
90 COG5435 Uncharacterized conser 21.2 1.3E+02 0.0028 24.7 3.5 30 232-261 107-136 (147)
91 cd02784 MopB_CT_PHLH The MopB_ 20.9 3.7E+02 0.008 21.5 6.2 47 180-226 39-91 (137)
92 PF01333 Apocytochr_F_C: Apocy 20.2 1.1E+02 0.0025 24.0 2.9 55 190-247 22-82 (118)
No 1
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-46 Score=345.35 Aligned_cols=180 Identities=29% Similarity=0.491 Sum_probs=167.9
Q ss_pred CcCCCCCCEEEEEecchhhhccCceEEEEeeEEEEeC----C-----------------CC-------------------
Q 024831 80 NALRKAAPIERTLPCSLEDLYKGTTKKMKISRDVIDA----S-----------------GR------------------- 119 (262)
Q Consensus 80 ~~~~~g~di~~~l~itLee~~~G~~k~i~~~r~~~~~----~-----------------G~------------------- 119 (262)
++++++.||+++|+|||+|||+|++++|.+++.+.|. + |.
T Consensus 110 ~~~~rG~Dl~~~l~isleEa~~G~~~~i~~~~~~~C~~C~GsGak~gt~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C 189 (371)
T COG0484 110 NRPRRGADLRYNLEITLEEAVFGVKKEIRVTRSVTCSTCHGSGAKPGTDPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTC 189 (371)
T ss_pred CCcccCCceEEEEEeEhhhhccCceeeEecceeeECCcCCCCCCCCCCCCCcCCCCCCcCeEEEEEeeeEEEEEEECCCC
Confidence 4578899999999999999999999999999999872 1 10
Q ss_pred ------------------cccccEEEEEEeCCCCCCCceEEeCccccCCC-CCCCCcEEEEEEeeCCCCeeeeccceEEE
Q 024831 120 ------------------PNTTEEILTIEIKPGWKKGTKITFPEKGNELR-NVIPSDLIFIIDEKPHSLFKRDGNDLVVT 180 (262)
Q Consensus 120 ------------------~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~-~~~~gDlv~~i~~~~h~~f~R~G~DL~~~ 180 (262)
++.+.++|+|+||+|+.+|++|+++++|++.+ +.++|||||+|.+++|+.|.|+|+||+++
T Consensus 190 ~G~G~~i~~pC~~C~G~G~v~~~~~i~V~IPaGv~~g~~ir~~g~G~~g~~Ggp~GDLyv~i~v~~h~~F~R~g~dL~~~ 269 (371)
T COG0484 190 NGTGKIIKDPCGKCKGKGRVKKKKSISVNIPAGVDDGDRIRLSGEGEAGPNGGPAGDLYVFVHVKPHPIFERDGDDLYCE 269 (371)
T ss_pred ccceeECCCCCCCCCCCCeEeeeeEEEEECCCCCccCCEEEEecCcccCCCCCCCccEEEEEEeecCCCeEECCCceEec
Confidence 56788999999999999999999999999995 67789999999999999999999999999
Q ss_pred EEecHHHHhCCCEEEEecCCCcEEEEeeCCccCCCcEEEEcCCCCCCCCCCCCCCCEEEEEEEeCCCCCCHHHHHHHHhh
Q 024831 181 QKISLVEALTGYTVQLTTLDGRTLTVPINSVISPTYEEVIKGEGMPIPKEPSKRGNLRIKFNIKFPSKLTTEQKSGLKRL 260 (262)
Q Consensus 181 ~~I~l~~Al~G~~i~i~tldG~~l~v~i~~~~~~g~~~~i~g~GmP~~~~~~~rGDL~V~~~V~~P~~ls~~qk~~l~~~ 260 (262)
++|++.+|++|++|+|+||||+ ++|+||+.+|+|++++|+|+|||..+ ...+|||||+++|++|++||++||++|+++
T Consensus 270 ~~Is~~~AalG~~i~vptl~g~-~~l~ip~Gtq~G~~~rl~gkG~p~~~-~~~~GDl~v~v~v~~P~~ls~~q~~lL~~~ 347 (371)
T COG0484 270 VPISFTEAALGGEIEVPTLDGR-VKLKIPAGTQTGEVFRLRGKGMPKLR-SGGRGDLYVRVKVETPKNLSDEQKELLEEF 347 (371)
T ss_pred cccCHHHHhcCCEEEEEecCCC-EEEecCCCCccCcEEEEcCCCccccC-CCCcCCEEEEEEEEcCCCCCHHHHHHHHHH
Confidence 9999999999999999999999 99999999999999999999999866 567799999999999999999999999987
Q ss_pred C
Q 024831 261 I 261 (262)
Q Consensus 261 l 261 (262)
.
T Consensus 348 ~ 348 (371)
T COG0484 348 A 348 (371)
T ss_pred H
Confidence 5
No 2
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=100.00 E-value=2.2e-45 Score=346.49 Aligned_cols=181 Identities=44% Similarity=0.717 Sum_probs=165.8
Q ss_pred CCCCCCEEEEEecchhhhccCceEEEEeeEEEEeC----C----------------C-----------------------
Q 024831 82 LRKAAPIERTLPCSLEDLYKGTTKKMKISRDVIDA----S----------------G----------------------- 118 (262)
Q Consensus 82 ~~~g~di~~~l~itLee~~~G~~k~i~~~r~~~~~----~----------------G----------------------- 118 (262)
+++++|+.++|+|||+|+|+|++++|+++|.+.|. + |
T Consensus 120 ~~rg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~ 199 (421)
T PTZ00037 120 KKRGEDIVSHLKVTLEQIYNGAMRKLAINKDVICANCEGHGGPKDAFVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCN 199 (421)
T ss_pred ccCCCCEEEEeeeeHHHHhCCCceEEEeeccccccccCCCCCCCCCCccCCCCCCCCeEEEEEeecceeeEEEEeCCCCC
Confidence 35689999999999999999999999999887762 1 1
Q ss_pred ---C---------------cccccEEEEEEeCCCCCCCceEEeCccccCCCCCCCCcEEEEEEeeCCCCeeeeccceEEE
Q 024831 119 ---R---------------PNTTEEILTIEIKPGWKKGTKITFPEKGNELRNVIPSDLIFIIDEKPHSLFKRDGNDLVVT 180 (262)
Q Consensus 119 ---~---------------~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~gDlv~~i~~~~h~~f~R~G~DL~~~ 180 (262)
+ ++.+.++++|+||+||++|++|+|+|+|++.++..+|||+|+|++++|+.|+|+|+||+++
T Consensus 200 G~G~~i~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~dG~~I~~~G~Gd~~~~~~pGDLiv~I~~~ph~~F~R~G~DL~~~ 279 (421)
T PTZ00037 200 GQGKIIPESKKCKNCSGKGVKKTRKILEVNIDKGVPNQHKITFHGEADEKPNEIPGNVVFILNEKPHDTFKREGGDLFIT 279 (421)
T ss_pred CcceeccccccCCcCCCcceeeeeeEEEEeeCCCCCCCcEEEEecccCCCCCCCCCcEEEEEEecCCCCcEEeCCeEEEE
Confidence 0 2344578999999999999999999999998888899999999999999999999999999
Q ss_pred EEecHHHHhCCCEEEEecCCCcEEEEeeCCc--cCCCcEEEEcCCCCCCCCCCCCCCCEEEEEEEeCC--CCCCHHHHHH
Q 024831 181 QKISLVEALTGYTVQLTTLDGRTLTVPINSV--ISPTYEEVIKGEGMPIPKEPSKRGNLRIKFNIKFP--SKLTTEQKSG 256 (262)
Q Consensus 181 ~~I~l~~Al~G~~i~i~tldG~~l~v~i~~~--~~~g~~~~i~g~GmP~~~~~~~rGDL~V~~~V~~P--~~ls~~qk~~ 256 (262)
++|+|++||+|+++.|+||||+.|.|+||+. ++||++++|+|+|||..+++..+|||||+|+|.|| ++||++|+++
T Consensus 280 ~~Isl~eAllG~~i~I~tLdG~~l~I~ip~g~vt~pg~~~~I~geGmP~~~~~~~rGDL~V~~~V~~P~~~~Ls~~qk~l 359 (421)
T PTZ00037 280 KKISLYEALTGFVFYITHLDGRKLLVNTPPGEVVKPGDIKVINNEGMPTYKSPFKKGNLYVTFEVIFPVDRKFTNEEKEI 359 (421)
T ss_pred EeCCHHHHhcCCEEEeeCCCCCeEEEEeCCCcccCCCcEEEeCCCCcccCCCCCCCCCEEEEEEEEcCCCCCCCHHHHHH
Confidence 9999999999999999999999899999964 99999999999999987766689999999999999 9999999999
Q ss_pred HHhhCC
Q 024831 257 LKRLIP 262 (262)
Q Consensus 257 l~~~l~ 262 (262)
|+++||
T Consensus 360 l~~l~~ 365 (421)
T PTZ00037 360 LKSLFP 365 (421)
T ss_pred HHHhcc
Confidence 999985
No 3
>PRK14296 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=4.3e-44 Score=333.91 Aligned_cols=179 Identities=24% Similarity=0.369 Sum_probs=163.4
Q ss_pred CCCCCCEEEEEecchhhhccCceEEEEeeEEEEeC----CC-----------------C---------------------
Q 024831 82 LRKAAPIERTLPCSLEDLYKGTTKKMKISRDVIDA----SG-----------------R--------------------- 119 (262)
Q Consensus 82 ~~~g~di~~~l~itLee~~~G~~k~i~~~r~~~~~----~G-----------------~--------------------- 119 (262)
+++++|++++|+|||||||+|++++|++.|.+.|. +| .
T Consensus 119 ~~~g~di~~~l~ltlee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C 198 (372)
T PRK14296 119 STKGQSVSLDIYLTFKELLFGVDKIIELDLLTNCSKCFGSGAESNSDIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVC 198 (372)
T ss_pred cCCCCCeEEEeeccHHHhhCCeeEEEEEeeeeccCCCCCCccCCCCCCccCCCCCCCceEEEEEeccceEEEEEecCCCc
Confidence 45789999999999999999999999999987762 11 0
Q ss_pred ------------------cccccEEEEEEeCCCCCCCceEEeCccccCC-CCCCCCcEEEEEEeeCCCCeeee-ccceEE
Q 024831 120 ------------------PNTTEEILTIEIKPGWKKGTKITFPEKGNEL-RNVIPSDLIFIIDEKPHSLFKRD-GNDLVV 179 (262)
Q Consensus 120 ------------------~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~-~~~~~gDlv~~i~~~~h~~f~R~-G~DL~~ 179 (262)
++.++++++|.||+||++|++|+|+++|++. ++..+|||+|+|++++|+.|+|+ |+||++
T Consensus 199 ~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~v~v~~h~~F~R~~G~DL~~ 278 (372)
T PRK14296 199 NGAGKIIKNKCKNCKGKGKYLERKKIEVNIPKGIRPNQQIKLSQKGHASLNNGVNGDLIIDIYLKESKVFEIINNNDILM 278 (372)
T ss_pred CCcceeecccccCCCCceEEEEEEEEEEEECCCCCCCCEEEEeccccCCCCCCCCccEEEEEEEeCCCCEEEeCCCcEEE
Confidence 1234578999999999999999999999987 56779999999999999999995 899999
Q ss_pred EEEecHHHHhCCCEEEEecCCCcEEEEeeCCccCCCcEEEEcCCCCCCCCCCCCCCCEEEEEEEeCCCCCCHHHHHHHHh
Q 024831 180 TQKISLVEALTGYTVQLTTLDGRTLTVPINSVISPTYEEVIKGEGMPIPKEPSKRGNLRIKFNIKFPSKLTTEQKSGLKR 259 (262)
Q Consensus 180 ~~~I~l~~Al~G~~i~i~tldG~~l~v~i~~~~~~g~~~~i~g~GmP~~~~~~~rGDL~V~~~V~~P~~ls~~qk~~l~~ 259 (262)
+++|+|++||+|+++.|+||||+ +.|+||++++||++++|+|+|||...+++.+|||||+|+|+||+.||++||++|++
T Consensus 279 ~~~Isl~eAllG~~~~i~tldG~-~~v~ip~~t~~g~~~ri~GkGmP~~~~~~~~GDL~V~~~V~~P~~Ls~~q~~~l~~ 357 (372)
T PRK14296 279 TYNISYLDAILGNEIIIKTLDGD-IKYKLPKSINSNELIIINNKGLYKSINKDKRGDLIIKVNIVVPKNLSKKEKELIEQ 357 (372)
T ss_pred EEecCHHHHhCCCEEEeeCCCCC-EEEEECCccCCCcEEEEcCCCCCcCCCCCCcCCEEEEEEEECCCCCCHHHHHHHHH
Confidence 99999999999999999999998 99999999999999999999999765566799999999999999999999999999
Q ss_pred hC
Q 024831 260 LI 261 (262)
Q Consensus 260 ~l 261 (262)
++
T Consensus 358 l~ 359 (372)
T PRK14296 358 IY 359 (372)
T ss_pred HH
Confidence 87
No 4
>PRK14286 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=4e-43 Score=327.50 Aligned_cols=179 Identities=27% Similarity=0.438 Sum_probs=163.9
Q ss_pred CCCCCCEEEEEecchhhhccCceEEEEeeEEEEeC----CCC--------------------------------------
Q 024831 82 LRKAAPIERTLPCSLEDLYKGTTKKMKISRDVIDA----SGR-------------------------------------- 119 (262)
Q Consensus 82 ~~~g~di~~~l~itLee~~~G~~k~i~~~r~~~~~----~G~-------------------------------------- 119 (262)
+++++|++++|+|||||||+|++++|+++|.+.|. +|.
T Consensus 120 ~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G 199 (372)
T PRK14286 120 PQRGSDLRYNLEVSLEDAALGREYKIEIPRLESCVDCNGSGASKGSSPTTCPDCGGSGQIRRTQGFFSVATTCPTCRGKG 199 (372)
T ss_pred CCCCCCeeEEEEEEHHHHhCCeeEEEEeeccccCCCCcCCCcCCCCCCccCCCCcCeEEEEEEeceEEEEEeCCCCCcee
Confidence 45789999999999999999999999999988763 110
Q ss_pred --------------cccccEEEEEEeCCCCCCCceEEeCccccCCC-CCCCCcEEEEEEeeCCCCeeeeccceEEEEEec
Q 024831 120 --------------PNTTEEILTIEIKPGWKKGTKITFPEKGNELR-NVIPSDLIFIIDEKPHSLFKRDGNDLVVTQKIS 184 (262)
Q Consensus 120 --------------~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~-~~~~gDlv~~i~~~~h~~f~R~G~DL~~~~~I~ 184 (262)
++.++++++|+||+|+++|++|+|+++|++.+ +..+|||+|+|++++|+.|+|+|+||+++++|+
T Consensus 200 ~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Is 279 (372)
T PRK14286 200 TVISNPCKTCGGQGLQEKRRTINIKIPPGVETGSRLKVSGEGEAGPNGGPHGDLYVVTHIKKHELFERQGNDLILVRKIS 279 (372)
T ss_pred eEecccCCCCCCCcEEecceEEEEEECCCCCCCCEEEECCccccCCCCCCCceEEEEEEEccCCCEEEecCCEEEEEEEC
Confidence 23456899999999999999999999999886 456799999999999999999999999999999
Q ss_pred HHHHhCCCEEEEecCCCcEEEEeeCCccCCCcEEEEcCCCCCCCCCCCCCCCEEEEEEEeCCCCCCHHHHHHHHhhC
Q 024831 185 LVEALTGYTVQLTTLDGRTLTVPINSVISPTYEEVIKGEGMPIPKEPSKRGNLRIKFNIKFPSKLTTEQKSGLKRLI 261 (262)
Q Consensus 185 l~~Al~G~~i~i~tldG~~l~v~i~~~~~~g~~~~i~g~GmP~~~~~~~rGDL~V~~~V~~P~~ls~~qk~~l~~~l 261 (262)
|.+||+|+++.|+||||+.+.|+||+++++|++++|+|+|||..+ ...+|||||+|+|.||+.|+++|+++|+++|
T Consensus 280 l~eAl~G~~~~i~tldG~~i~v~ip~g~~~g~~~ri~G~G~P~~~-~~~~GDL~V~~~V~~P~~Ls~~qk~~l~~l~ 355 (372)
T PRK14286 280 LAQAILGAEIEVPTIDGKKAKMKIPEGTESGQVFRLKGHGMPYLG-AYGKGDQHVIVKIEIPKKITRRQRELIEEFA 355 (372)
T ss_pred HHHHhCCCEEEEeCCCCCEEEEEeCCccCCCcEEEECCCCCCCCC-CCCCCcEEEEEEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999765 3468999999999999999999999999986
No 5
>PRK14295 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=5.2e-43 Score=328.31 Aligned_cols=179 Identities=22% Similarity=0.397 Sum_probs=163.4
Q ss_pred cCCCCCCEEEEEecchhhhccCceEEEEeeEEEEeC----CC--------------------------------------
Q 024831 81 ALRKAAPIERTLPCSLEDLYKGTTKKMKISRDVIDA----SG-------------------------------------- 118 (262)
Q Consensus 81 ~~~~g~di~~~l~itLee~~~G~~k~i~~~r~~~~~----~G-------------------------------------- 118 (262)
++++++|++++|+|||||+|+|++++|+++|.+.|. +|
T Consensus 135 ~~~~g~di~~~l~lsLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~ 214 (389)
T PRK14295 135 QPRRGADVESEVTLSFTEAIDGATVPLRLTSQAPCPACSGTGAKNGTTPRVCPTCSGTGQVSRNSGGFSLSEPCPDCKGR 214 (389)
T ss_pred CCCCCCCEEEEEEEEHHHHhCCceEEEEeeccccCCCCcccccCCCCCCcCCCCCCCEeEEEEEecceEEEEecCCCcce
Confidence 356789999999999999999999999999987763 11
Q ss_pred -------------C-cccccEEEEEEeCCCCCCCceEEeCccccCCC-CCCCCcEEEEEEeeCCCCeeeeccceEEEEEe
Q 024831 119 -------------R-PNTTEEILTIEIKPGWKKGTKITFPEKGNELR-NVIPSDLIFIIDEKPHSLFKRDGNDLVVTQKI 183 (262)
Q Consensus 119 -------------~-~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~-~~~~gDlv~~i~~~~h~~f~R~G~DL~~~~~I 183 (262)
+ ++.+.++++|.||+||++|++|+|+++|++.+ +..+|||+|+|++++|+.|+|+|+||+++++|
T Consensus 215 G~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~I 294 (389)
T PRK14295 215 GLIADDPCLVCKGSGRAKSSRTMQVRIPAGVSDGQRIRLRGKGAPGERGGPAGDLYVVVHVDPHPVFGRSGDNLTVTVPV 294 (389)
T ss_pred eEEeccCCCCCCCCceEeeeeEEEEEeCCCCCCCCEEEEcccccCCCCCCCCccEEEEEEEecCCCEEEecCCEEEEEee
Confidence 0 23456899999999999999999999999874 56789999999999999999999999999999
Q ss_pred cHHHHhCCCEEEEecCCCcEEEEeeCCccCCCcEEEEcCCCCCCCCCCCCCCCEEEEEEEeCCCCCCHHHHHHHHhhC
Q 024831 184 SLVEALTGYTVQLTTLDGRTLTVPINSVISPTYEEVIKGEGMPIPKEPSKRGNLRIKFNIKFPSKLTTEQKSGLKRLI 261 (262)
Q Consensus 184 ~l~~Al~G~~i~i~tldG~~l~v~i~~~~~~g~~~~i~g~GmP~~~~~~~rGDL~V~~~V~~P~~ls~~qk~~l~~~l 261 (262)
+|.+||+|++++|+||||+.+.|+||+++++|++++|+|+|||.. .+.+|||||+|+|.||++||++||++|++++
T Consensus 295 sl~eAl~G~~~~I~tldG~~~~v~ip~g~~~g~~iri~G~G~p~~--~~~~GDL~i~~~v~~P~~Ls~~qk~~l~~l~ 370 (389)
T PRK14295 295 TFPEAALGAEVRVPTLGGPPVTVKLPPGTPNGRVLRVRGKGAVRK--DGTRGDLLVTVEVAVPKDLSGKAREALEAFR 370 (389)
T ss_pred cHHHHhCCCeEEEECCCCCEEEEEECCccCCCcEEEECCCCcCCC--CCCCCCEEEEEEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999999889999999999999999999999963 3568999999999999999999999999875
No 6
>PRK14285 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1e-42 Score=323.97 Aligned_cols=179 Identities=29% Similarity=0.433 Sum_probs=163.8
Q ss_pred CCCCCCEEEEEecchhhhccCceEEEEeeEEEEeC----CC-----------------C---------------------
Q 024831 82 LRKAAPIERTLPCSLEDLYKGTTKKMKISRDVIDA----SG-----------------R--------------------- 119 (262)
Q Consensus 82 ~~~g~di~~~l~itLee~~~G~~k~i~~~r~~~~~----~G-----------------~--------------------- 119 (262)
+++++|++++|+|||||+|+|++++|+++|.+.|. +| +
T Consensus 116 ~~~g~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G 195 (365)
T PRK14285 116 HEKGQDLTYQIEISLEDAYLGYKNNINITRNMLCESCLGKKSEKGTSPSICNMCNGSGRVMQGGGFFRVTTTCPKCYGNG 195 (365)
T ss_pred CCCCCCEEEEEEEEHHHhhCCeEEEEEeeecccCCCCCCcccCCCCCCccCCCccCceeEEecCceeEEeeecCCCCCcc
Confidence 45789999999999999999999999999988762 11 0
Q ss_pred --------------cccccEEEEEEeCCCCCCCceEEeCccccCCCC-CCCCcEEEEEEeeCCCCeeeeccceEEEEEec
Q 024831 120 --------------PNTTEEILTIEIKPGWKKGTKITFPEKGNELRN-VIPSDLIFIIDEKPHSLFKRDGNDLVVTQKIS 184 (262)
Q Consensus 120 --------------~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~-~~~gDlv~~i~~~~h~~f~R~G~DL~~~~~I~ 184 (262)
++.++++++|+||||+++|++|+|+++|++.++ ..+|||+|+|++++|+.|+|+|+||+++++|+
T Consensus 196 ~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~f~R~G~dL~~~~~Is 275 (365)
T PRK14285 196 KIISNPCKSCKGKGSLKKKETIELKIPAGIDDNQQIKMRGKGSVNPDNQQYGDLYIKILIKPHKIFKRNGKDLYATLPIS 275 (365)
T ss_pred cccCCCCCCCCCCCEEeccEEEEEEECCCCCCCCEEEEeeccccCCCCCCCCCEEEEEEEecCCCeEEeccceEEEEecC
Confidence 245668999999999999999999999998864 56899999999999999999999999999999
Q ss_pred HHHHhCCCEEEEecCCCcEEEEeeCCccCCCcEEEEcCCCCCCCCCCCCCCCEEEEEEEeCCCCCCHHHHHHHHhhC
Q 024831 185 LVEALTGYTVQLTTLDGRTLTVPINSVISPTYEEVIKGEGMPIPKEPSKRGNLRIKFNIKFPSKLTTEQKSGLKRLI 261 (262)
Q Consensus 185 l~~Al~G~~i~i~tldG~~l~v~i~~~~~~g~~~~i~g~GmP~~~~~~~rGDL~V~~~V~~P~~ls~~qk~~l~~~l 261 (262)
|.+||+|++++|+||||++|.|+||+++++|++++|+|+|||..+ ...+|||||+|+|.+|+.|+++|+++|++++
T Consensus 276 l~eAl~G~~~~i~tldG~~v~V~Ip~g~~~g~~irl~GkG~p~~~-~~~~GDL~V~~~v~~P~~l~~~q~~~l~~l~ 351 (365)
T PRK14285 276 FTQAALGKEIKIQTIASKKIKIKIPKGTENDEQIIIKNEGMPILH-TEKFGNLILIIKIKTPKNLNSNAIKLLENLS 351 (365)
T ss_pred HHHHhCCCEEEEECCCCCEEEEEeCCCcCCCcEEEECCCCccCCC-CCCCCCEEEEEEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999765 3468999999999999999999999999976
No 7
>PRK14277 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=9.7e-43 Score=326.40 Aligned_cols=178 Identities=28% Similarity=0.423 Sum_probs=162.5
Q ss_pred CCCCCCEEEEEecchhhhccCceEEEEeeEEEEeC----CCC--------------------------------------
Q 024831 82 LRKAAPIERTLPCSLEDLYKGTTKKMKISRDVIDA----SGR-------------------------------------- 119 (262)
Q Consensus 82 ~~~g~di~~~l~itLee~~~G~~k~i~~~r~~~~~----~G~-------------------------------------- 119 (262)
+++++|++++|+|||||+|+|++++|+++|.+.|. +|.
T Consensus 125 ~~kg~di~~~l~vtLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C 204 (386)
T PRK14277 125 PQKGADIRYDLELTFEEAAFGTEKEIEVERFEKCDVCKGSGAKPGSKPVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRC 204 (386)
T ss_pred CCCCCCEEEEEEEEHHHHhCCeEEEEEEEeeccCCCCCCCCcCCCCCCccCCCCCCEEEEEEEEeccCceEEEEEECCCC
Confidence 45789999999999999999999999999998773 110
Q ss_pred ------------------cccccEEEEEEeCCCCCCCceEEeCccccCC-CCCCCCcEEEEEEeeCCCCeeeeccceEEE
Q 024831 120 ------------------PNTTEEILTIEIKPGWKKGTKITFPEKGNEL-RNVIPSDLIFIIDEKPHSLFKRDGNDLVVT 180 (262)
Q Consensus 120 ------------------~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~-~~~~~gDlv~~i~~~~h~~f~R~G~DL~~~ 180 (262)
++.++++++|.||+|+++|++|+|+++|++. .+..+|||+|+|++++|+.|+|+|+||+++
T Consensus 205 ~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~ 284 (386)
T PRK14277 205 HGEGKIITDPCNKCGGTGRIRRRRKIKVNIPAGIDDGQMITLRGEGEPGIKGGPNGDLYIVIKVKPHPLFKREGYNVYLE 284 (386)
T ss_pred CcceeeccCCCCCCCCCcEEeeeeEEEEecCCCccCCcEEEEccccccCCCCCCCccEEEEEEEecCCCeEEecCCEEEE
Confidence 2345678999999999999999999999986 356789999999999999999999999999
Q ss_pred EEecHHHHhCCCEEEEecCCCcEEEEeeCCccCCCcEEEEcCCCCCCCCCCCCCCCEEEEEEEeCCCCCCHHHHHHHHhh
Q 024831 181 QKISLVEALTGYTVQLTTLDGRTLTVPINSVISPTYEEVIKGEGMPIPKEPSKRGNLRIKFNIKFPSKLTTEQKSGLKRL 260 (262)
Q Consensus 181 ~~I~l~~Al~G~~i~i~tldG~~l~v~i~~~~~~g~~~~i~g~GmP~~~~~~~rGDL~V~~~V~~P~~ls~~qk~~l~~~ 260 (262)
++|+|.+||+|+++.|+||||+ +.|+||+++++|++++|+|+|||..+ ...+|||||+|+|.||+.|+++|+++|+++
T Consensus 285 ~~Isl~eAl~G~~~~i~tldG~-~~v~ip~g~~~g~~~ri~g~G~p~~~-~~~~GDL~v~~~V~~P~~Ls~~qk~~l~~l 362 (386)
T PRK14277 285 MPITFTDAALGGEIEIPTLDGK-VKFTIPEGTQTGTKFRLRGKGIPHLR-GRGRGDQIVKVYIEVPKKLTEKQKELLREF 362 (386)
T ss_pred EEcCHHHHhCCCEEEEEcCCCC-EEEEECCCCCCCCEEEECCCCCCCCC-CCCCCCEEEEEEEEeCCCCCHHHHHHHHHH
Confidence 9999999999999999999998 89999999999999999999999765 346899999999999999999999999998
Q ss_pred C
Q 024831 261 I 261 (262)
Q Consensus 261 l 261 (262)
+
T Consensus 363 ~ 363 (386)
T PRK14277 363 E 363 (386)
T ss_pred H
Confidence 6
No 8
>PRK14281 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.7e-42 Score=325.72 Aligned_cols=178 Identities=29% Similarity=0.462 Sum_probs=162.8
Q ss_pred CCCCCCEEEEEecchhhhccCceEEEEeeEEEEeC----CC----------------C----------------------
Q 024831 82 LRKAAPIERTLPCSLEDLYKGTTKKMKISRDVIDA----SG----------------R---------------------- 119 (262)
Q Consensus 82 ~~~g~di~~~l~itLee~~~G~~k~i~~~r~~~~~----~G----------------~---------------------- 119 (262)
+++++|++++|+|||||+|+|++++|+++|.+.|. +| .
T Consensus 133 ~~~g~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~ 212 (397)
T PRK14281 133 GIPGTDLKIRLKLTLEEIAKGVEKTLKIKKQVPCKECNGTGSKTGATETCPTCHGSGEVRQASKTMFGQFVNITACPTCG 212 (397)
T ss_pred CCCCCCEEEEEEeEHHHHhCCeEEEEEEEeeecCCCCCCcccCCCCCccCCCCCCCcEEEEEEecccceEEEEEecCCCc
Confidence 35789999999999999999999999999988772 11 0
Q ss_pred -----------------cccccEEEEEEeCCCCCCCceEEeCccccCCC-CCCCCcEEEEEEeeCCCCeeeeccceEEEE
Q 024831 120 -----------------PNTTEEILTIEIKPGWKKGTKITFPEKGNELR-NVIPSDLIFIIDEKPHSLFKRDGNDLVVTQ 181 (262)
Q Consensus 120 -----------------~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~-~~~~gDlv~~i~~~~h~~f~R~G~DL~~~~ 181 (262)
++.++++++|+||+||++|++|+|+++|++.+ +..+|||+|+|++++|+.|+|+|+||++++
T Consensus 213 G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~~~~h~~F~R~G~DL~~~~ 292 (397)
T PRK14281 213 GEGRVVKDRCPACYGEGIKQGEVTVKVTVPAGVQDGNYLTLRGQGNAGPRGGAPGDLIVVIEEKPHELFVRNGDDVIYNL 292 (397)
T ss_pred ceeeeeCCCCCCCCCCccEecceEEEEecCCCCCCCCEEEEecccccCCCCCCCCcEEEEEEEcCCCCeEEecCCEEEEE
Confidence 23456799999999999999999999999886 467899999999999999999999999999
Q ss_pred EecHHHHhCCCEEEEecCCCcEEEEeeCCccCCCcEEEEcCCCCCCCCCCCCCCCEEEEEEEeCCCCCCHHHHHHHHhhC
Q 024831 182 KISLVEALTGYTVQLTTLDGRTLTVPINSVISPTYEEVIKGEGMPIPKEPSKRGNLRIKFNIKFPSKLTTEQKSGLKRLI 261 (262)
Q Consensus 182 ~I~l~~Al~G~~i~i~tldG~~l~v~i~~~~~~g~~~~i~g~GmP~~~~~~~rGDL~V~~~V~~P~~ls~~qk~~l~~~l 261 (262)
+|+|.+||+|++++|+||||+ +.|+||+++++|++++|+|+|||..+ ...+|||||+|+|.||++||++|+++|++++
T Consensus 293 ~Isl~eAl~G~~~~i~tldg~-i~v~ip~g~~~G~~~ri~g~G~P~~~-~~~~GDL~V~~~V~~P~~Ls~~qk~~l~~l~ 370 (397)
T PRK14281 293 AVSYPDLVLGTKVEVPTLDGA-VKLTIPAGTQPETMLRIPGKGIGHLR-GSGRGDQYVRVNVFVPKEVSHQDKELLKELK 370 (397)
T ss_pred EecHHHHhcCCeEEeecCCcc-EEEEeCCccCCCcEEEEcCCCCCCCC-CCCCCCEEEEEEEEcCCCCCHHHHHHHHHHH
Confidence 999999999999999999998 89999999999999999999999755 3578999999999999999999999999986
No 9
>PRK14288 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=4.9e-43 Score=326.58 Aligned_cols=179 Identities=23% Similarity=0.349 Sum_probs=165.4
Q ss_pred CCCCCCEEEEEecchhhhccCceEEEEeeEEEEeC----CC---------------------------------------
Q 024831 82 LRKAAPIERTLPCSLEDLYKGTTKKMKISRDVIDA----SG--------------------------------------- 118 (262)
Q Consensus 82 ~~~g~di~~~l~itLee~~~G~~k~i~~~r~~~~~----~G--------------------------------------- 118 (262)
+++++|++++|+|||||+|+|++++|+++|.+.|. +|
T Consensus 110 ~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~ 189 (369)
T PRK14288 110 SSIAPDYLQTIELSFKEAVFGCKKTIKVQYQSVCESCDGTGAKDKALETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGK 189 (369)
T ss_pred CCCCCCeeEeccccHHHHhCCeEEEEEEEeeccCCCCCCcccCCCCCcCCCCCCCCcEEEEEeceEEEEEecCCCCCCce
Confidence 45789999999999999999999999999987762 11
Q ss_pred ------------CcccccEEEEEEeCCCCCCCceEEeCccccCCCCCCCCcEEEEEEeeCCCCeeeeccceEEEEEecHH
Q 024831 119 ------------RPNTTEEILTIEIKPGWKKGTKITFPEKGNELRNVIPSDLIFIIDEKPHSLFKRDGNDLVVTQKISLV 186 (262)
Q Consensus 119 ------------~~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~gDlv~~i~~~~h~~f~R~G~DL~~~~~I~l~ 186 (262)
.++.+.++++|+|||||++|++|+|+++|++.++..+|||+|+|++++|+.|+|+|+||+++++|+|.
T Consensus 190 ~~~~~C~~C~G~g~v~~~~~l~V~IP~G~~~G~~i~l~g~G~~~~~~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~ 269 (369)
T PRK14288 190 IIKTPCQACKGKTYILKDEEIDAIIPEGIDDQNRMVLKNKGNEYEKGKRGDLYLEARVKEDEHFKREGCDLFIEAPVFFT 269 (369)
T ss_pred EccccCccCCCcceEEEEEEEEEecCCCCCCCCEEEEccCccCCCCCCCCCEEEEEEEEECCCcEEeCCEEEEEEecCHH
Confidence 03456789999999999999999999999998888899999999999999999999999999999999
Q ss_pred HHhCCCEEEEecCCCcEEEEeeCCccCCCcEEEEcCCCCCCCCCCCCCCCEEEEEEEeCCCCCCHHHHHHHHhhC
Q 024831 187 EALTGYTVQLTTLDGRTLTVPINSVISPTYEEVIKGEGMPIPKEPSKRGNLRIKFNIKFPSKLTTEQKSGLKRLI 261 (262)
Q Consensus 187 ~Al~G~~i~i~tldG~~l~v~i~~~~~~g~~~~i~g~GmP~~~~~~~rGDL~V~~~V~~P~~ls~~qk~~l~~~l 261 (262)
+||+|+++.|+||||+.+.|+||++++||++++|+|+|||..+ ...+|||||+|+|.||+.|+++|+++|+++|
T Consensus 270 eAllG~~i~v~tLdG~~l~i~i~~~~~~g~~~~i~g~G~p~~~-~~~~GDL~v~~~v~~P~~ls~~q~~~l~~~~ 343 (369)
T PRK14288 270 TIALGHTIKVPSLKGDELELKIPRNARDRQTFAFRNEGVKHPE-SSYRGSLIVELQVIYPKSLNKEQQELLEKLH 343 (369)
T ss_pred HHhcCCEEEeecCCCCEEEEEeCCCCCCCcEEEEcCCCCCCCC-CCCCCCEEEEEEEECCCCCCHHHHHHHHHHH
Confidence 9999999999999999899999999999999999999999765 4568999999999999999999999999987
No 10
>PRK14297 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.3e-42 Score=324.96 Aligned_cols=179 Identities=25% Similarity=0.421 Sum_probs=162.6
Q ss_pred CCCCCCEEEEEecchhhhccCceEEEEeeEEEEeC----CC-----------------C---------------------
Q 024831 82 LRKAAPIERTLPCSLEDLYKGTTKKMKISRDVIDA----SG-----------------R--------------------- 119 (262)
Q Consensus 82 ~~~g~di~~~l~itLee~~~G~~k~i~~~r~~~~~----~G-----------------~--------------------- 119 (262)
+++++|++++|+|||||+|+|++++|+++|.+.|. +| +
T Consensus 118 ~~kg~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C 197 (380)
T PRK14297 118 PQRGADIEYTINLTFEEAVFGVEKEISVTRNENCETCNGTGAKPGTSPKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKC 197 (380)
T ss_pred CCCCCCEEEEEEEEHHHhcCCeEEEEEeeeeccCCCcccccccCCCcCccCCCccCeEEEEEEEEcCCceeEEEEeCCCC
Confidence 45789999999999999999999999999987762 11 0
Q ss_pred ------------------cccccEEEEEEeCCCCCCCceEEeCccccCCC-CCCCCcEEEEEEeeCCCCeeeeccceEEE
Q 024831 120 ------------------PNTTEEILTIEIKPGWKKGTKITFPEKGNELR-NVIPSDLIFIIDEKPHSLFKRDGNDLVVT 180 (262)
Q Consensus 120 ------------------~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~-~~~~gDlv~~i~~~~h~~f~R~G~DL~~~ 180 (262)
++.+.++++|.||||+++|++|+++++|++.+ +..+|||+|+|++++|+.|+|+|+||+++
T Consensus 198 ~G~G~~~~~~C~~C~G~g~v~~~~~i~V~Ip~G~~~G~~I~l~g~G~~~~~~~~~GDL~v~v~v~~h~~f~R~G~DL~~~ 277 (380)
T PRK14297 198 GGSGKVIEDPCNKCHGKGKVRKNRKIKVNVPAGVDTGNVIPLRGQGEHGKNGGPTGDLYINIRVAPHKTFKRKGFDIYID 277 (380)
T ss_pred CCCceEcCCCCCCCCCCeEEEeEeEEEEEeCCCCCCCcEEEEecCccCCCCCCCCccEEEEEEEcCCCCEEEeCCCEEEE
Confidence 13456889999999999999999999999874 55689999999999999999999999999
Q ss_pred EEecHHHHhCCCEEEEecCCCcEEEEeeCCccCCCcEEEEcCCCCCCCCCCCCCCCEEEEEEEeCCCCCCHHHHHHHHhh
Q 024831 181 QKISLVEALTGYTVQLTTLDGRTLTVPINSVISPTYEEVIKGEGMPIPKEPSKRGNLRIKFNIKFPSKLTTEQKSGLKRL 260 (262)
Q Consensus 181 ~~I~l~~Al~G~~i~i~tldG~~l~v~i~~~~~~g~~~~i~g~GmP~~~~~~~rGDL~V~~~V~~P~~ls~~qk~~l~~~ 260 (262)
++|+|.+||+|++++|+||||+ +.|+||+++++|++++|+|+|||..+ ...+|||||+|+|.||+.||++||++|+++
T Consensus 278 ~~Isl~eAl~G~~~~i~~ldg~-~~v~ip~g~~~g~~~ri~g~G~p~~~-~~~~GDL~v~~~v~~P~~ls~~q~~~l~~~ 355 (380)
T PRK14297 278 KHISFAKAALGTEIKVPTVDGE-VKYEVPAGTQPGTVFRLKGKGVPRVN-STGRGNQYVTVIVDIPKKLNSKQKEALTMF 355 (380)
T ss_pred EEeCHHHHhCCCcEEEEcCCCc-EEEEECCCcCCCCEEEEcCCCcCCCC-CCCCCcEEEEEEEEcCCCCCHHHHHHHHHH
Confidence 9999999999999999999997 89999999999999999999999754 457899999999999999999999999998
Q ss_pred CC
Q 024831 261 IP 262 (262)
Q Consensus 261 l~ 262 (262)
|+
T Consensus 356 ~~ 357 (380)
T PRK14297 356 ME 357 (380)
T ss_pred HH
Confidence 73
No 11
>PRK14278 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.2e-42 Score=324.79 Aligned_cols=179 Identities=25% Similarity=0.405 Sum_probs=163.1
Q ss_pred CCCCCCEEEEEecchhhhccCceEEEEeeEEEEeC----CC-----------------C---------------------
Q 024831 82 LRKAAPIERTLPCSLEDLYKGTTKKMKISRDVIDA----SG-----------------R--------------------- 119 (262)
Q Consensus 82 ~~~g~di~~~l~itLee~~~G~~k~i~~~r~~~~~----~G-----------------~--------------------- 119 (262)
+++++|++++|+|||||+|+|++++++++|.+.|. +| +
T Consensus 109 ~~~g~d~~~~l~vtLee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C 188 (378)
T PRK14278 109 VRPGSDSLLRMRLDLEECATGVTKQVTVDTAVLCDRCHGKGTAGDSKPVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTC 188 (378)
T ss_pred CCCCCCeEEEEEEEHHHhcCCeEEEEEEEeeccCCCCcCccCCCCCCceecCCccCceEEEEEEeccceeEEEEEECCCC
Confidence 45789999999999999999999999999987762 11 0
Q ss_pred ------------------cccccEEEEEEeCCCCCCCceEEeCccccCCCC-CCCCcEEEEEEeeCCCCeeeeccceEEE
Q 024831 120 ------------------PNTTEEILTIEIKPGWKKGTKITFPEKGNELRN-VIPSDLIFIIDEKPHSLFKRDGNDLVVT 180 (262)
Q Consensus 120 ------------------~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~-~~~gDlv~~i~~~~h~~f~R~G~DL~~~ 180 (262)
++.++++++|.||||+++|++|+|+++|++.++ ..+|||+|+|++++|+.|+|+|+||+++
T Consensus 189 ~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~~~~h~~F~R~G~DL~~~ 268 (378)
T PRK14278 189 RGVGEVIPDPCHECAGDGRVRARREITVKIPAGVGDGMRIRLAAQGEVGPGGGPAGDLYVEVHEQPHDVFVRDGDDLHCT 268 (378)
T ss_pred CccceeeCCCCCCCCCceeEecceEEEEEECCCCCCCcEEEEccCcCCCCCCCCCCCEEEEEEECcCCCEEEcCCCEEEE
Confidence 234568999999999999999999999998864 5679999999999999999999999999
Q ss_pred EEecHHHHhCCCEEEEecCCCcEEEEeeCCccCCCcEEEEcCCCCCCCCCCCCCCCEEEEEEEeCCCCCCHHHHHHHHhh
Q 024831 181 QKISLVEALTGYTVQLTTLDGRTLTVPINSVISPTYEEVIKGEGMPIPKEPSKRGNLRIKFNIKFPSKLTTEQKSGLKRL 260 (262)
Q Consensus 181 ~~I~l~~Al~G~~i~i~tldG~~l~v~i~~~~~~g~~~~i~g~GmP~~~~~~~rGDL~V~~~V~~P~~ls~~qk~~l~~~ 260 (262)
++|+|.+||+|+++.|+|||++.+.|+||+++++|++++|+|+|||..+ ...+|||||+|+|.||++||++||++|+++
T Consensus 269 ~~Isl~eAl~G~~~~i~tld~~~i~v~ip~g~~~g~~lrl~g~G~p~~~-~~~~GDL~V~~~V~~P~~Ls~~qk~~l~~~ 347 (378)
T PRK14278 269 VSVPMVDAALGTTVTVEAILDGPSEITIPPGTQPGSVITLRGRGMPHLR-SGGRGDLHAHVEVVVPTRLDHEDIELLREL 347 (378)
T ss_pred EecCHHHHhcCCeEEEecCCCCeEEEEeCCCcCCCcEEEECCCCCCCCC-CCCCCCEEEEEEEEcCCCCCHHHHHHHHHH
Confidence 9999999999999999999777899999999999999999999999765 457899999999999999999999999998
Q ss_pred C
Q 024831 261 I 261 (262)
Q Consensus 261 l 261 (262)
+
T Consensus 348 ~ 348 (378)
T PRK14278 348 K 348 (378)
T ss_pred H
Confidence 7
No 12
>PRK14276 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3.6e-42 Score=321.99 Aligned_cols=178 Identities=24% Similarity=0.376 Sum_probs=161.7
Q ss_pred CCCCCCEEEEEecchhhhccCceEEEEeeEEEEeC----CCC--------------------------------------
Q 024831 82 LRKAAPIERTLPCSLEDLYKGTTKKMKISRDVIDA----SGR-------------------------------------- 119 (262)
Q Consensus 82 ~~~g~di~~~l~itLee~~~G~~k~i~~~r~~~~~----~G~-------------------------------------- 119 (262)
+++++|++++|+|||||+|+|++++|++.|.+.|. +|.
T Consensus 116 ~~~g~di~~~l~vtLee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C 195 (380)
T PRK14276 116 PRQGDDLQYRVNLDFEEAIFGKEKEVSYNREATCHTCNGSGAKPGTSPVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVC 195 (380)
T ss_pred CCCCCCEEEEEEEEHHHhcCCeEEEEEeeccccCCCCcCcccCCCCCCccCCCCCCeeEEEEEEecCCceEEEEEECCCC
Confidence 35789999999999999999999999999987762 110
Q ss_pred ------------------cccccEEEEEEeCCCCCCCceEEeCccccCCC-CCCCCcEEEEEEeeCCCCeeeeccceEEE
Q 024831 120 ------------------PNTTEEILTIEIKPGWKKGTKITFPEKGNELR-NVIPSDLIFIIDEKPHSLFKRDGNDLVVT 180 (262)
Q Consensus 120 ------------------~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~-~~~~gDlv~~i~~~~h~~f~R~G~DL~~~ 180 (262)
++.+.++++|.||+||++|++|+|+++|++.+ +..+|||+|+|++++|+.|+|+|+||+++
T Consensus 196 ~G~G~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~l~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~ 275 (380)
T PRK14276 196 HGTGKEIKEPCQTCHGTGHEKQAHTVSVKIPAGVETGQQIRLQGQGEAGFNGGPYGDLYVVFRVEPSKKFERDGSTIYYT 275 (380)
T ss_pred CCCCccccCCCCCCCCceEEEEEEEEEEEeCCCccCCcEEEEeccccCCCCCCCCcCEEEEEEEEECcceeeecceEEEE
Confidence 23456789999999999999999999999885 45679999999999999999999999999
Q ss_pred EEecHHHHhCCCEEEEecCCCcEEEEeeCCccCCCcEEEEcCCCCCCCCCCCCCCCEEEEEEEeCCCCCCHHHHHHHHhh
Q 024831 181 QKISLVEALTGYTVQLTTLDGRTLTVPINSVISPTYEEVIKGEGMPIPKEPSKRGNLRIKFNIKFPSKLTTEQKSGLKRL 260 (262)
Q Consensus 181 ~~I~l~~Al~G~~i~i~tldG~~l~v~i~~~~~~g~~~~i~g~GmP~~~~~~~rGDL~V~~~V~~P~~ls~~qk~~l~~~ 260 (262)
++|+|.+||+|++++|+||||+ +.|+||+++++|++++|+|+|||..+ ...+|||||+|+|.||+.|+++|+++|+++
T Consensus 276 ~~Isl~eAl~G~~~~v~tldg~-i~v~ip~g~~~g~~~~i~g~G~p~~~-~~~~GDL~V~~~v~~P~~l~~~q~~~l~~~ 353 (380)
T PRK14276 276 LPISFVQAALGDTVEVPTVHGD-VELKIPAGTQTGKKFRLRGKGAPKLR-GGGNGDQHVTVNIVTPTKLNDAQKEALKAF 353 (380)
T ss_pred EecCHHHHhCCCeEEEEcCCCc-EEEEECCCCCCCCEEEECCCCcCCCC-CCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 9999999999999999999998 89999999999999999999999765 346799999999999999999999999998
Q ss_pred C
Q 024831 261 I 261 (262)
Q Consensus 261 l 261 (262)
|
T Consensus 354 ~ 354 (380)
T PRK14276 354 A 354 (380)
T ss_pred H
Confidence 6
No 13
>PRK14279 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.5e-42 Score=324.03 Aligned_cols=178 Identities=24% Similarity=0.401 Sum_probs=162.5
Q ss_pred cCCCCCCEEEEEecchhhhccCceEEEEeeEEEEeC----CCC-------------------------------------
Q 024831 81 ALRKAAPIERTLPCSLEDLYKGTTKKMKISRDVIDA----SGR------------------------------------- 119 (262)
Q Consensus 81 ~~~~g~di~~~l~itLee~~~G~~k~i~~~r~~~~~----~G~------------------------------------- 119 (262)
++++++|++++|+|||||||+|++++|++++.+.|. +|.
T Consensus 142 ~~~~g~di~~~l~ltLee~~~G~~~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~ 221 (392)
T PRK14279 142 RPRRGNDLETETTLDFVEAAKGVTMPLRLTSPAPCTTCHGSGARPGTSPKVCPTCNGSGVISRNQGAFGFSEPCTDCRGT 221 (392)
T ss_pred CCCCCCCeEEEEEEEHHHHhCCeEEEEeeeccccCCCCccccccCCCCCCCCCCCcceEEEEEEecceEEEEecCCCCce
Confidence 356789999999999999999999999999988763 110
Q ss_pred ---------------cccccEEEEEEeCCCCCCCceEEeCccccCCC-CCCCCcEEEEEEeeCCCCeeeeccceEEEEEe
Q 024831 120 ---------------PNTTEEILTIEIKPGWKKGTKITFPEKGNELR-NVIPSDLIFIIDEKPHSLFKRDGNDLVVTQKI 183 (262)
Q Consensus 120 ---------------~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~-~~~~gDlv~~i~~~~h~~f~R~G~DL~~~~~I 183 (262)
++.++++++|.|||||++|++|+|+++|++.+ +..+|||+|+|++++|+.|+|+|+||+++++|
T Consensus 222 G~~i~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~I 301 (392)
T PRK14279 222 GSIIEDPCEECKGTGVTTRTRTINVRIPPGVEDGQRIRLAGQGEAGLRGAPSGDLYVTVHVRPDKVFGRDGDDLTVTVPV 301 (392)
T ss_pred eEEeCCcCCCCCCCeEEEEeeeeEEEeCCCCCCCcEEEEeCCccCCCCCCCCCCEEEEEEEecCCcceeecCcEEEEEEc
Confidence 24456899999999999999999999999886 45679999999999999999999999999999
Q ss_pred cHHHHhCCCEEEEecCCCcEEEEeeCCccCCCcEEEEcCCCCCCCCCCCCCCCEEEEEEEeCCCCCCHHHHHHHHhhC
Q 024831 184 SLVEALTGYTVQLTTLDGRTLTVPINSVISPTYEEVIKGEGMPIPKEPSKRGNLRIKFNIKFPSKLTTEQKSGLKRLI 261 (262)
Q Consensus 184 ~l~~Al~G~~i~i~tldG~~l~v~i~~~~~~g~~~~i~g~GmP~~~~~~~rGDL~V~~~V~~P~~ls~~qk~~l~~~l 261 (262)
+|.+||+|++++|+||||+ +.|+||+++++|++++|+|+|||.. ...+|||||+|+|.||++|+++||++|++++
T Consensus 302 sl~eAl~G~~~~v~~ldg~-i~v~Ip~g~~~g~~iri~g~G~p~~--~~~~GDL~I~~~v~~P~~Ls~~q~~~l~~~~ 376 (392)
T PRK14279 302 SFTELALGSTLSVPTLDGP-VGVKVPAGTADGRILRVRGRGVPKR--SGGAGDLLVTVKVAVPPNLDGAAAEALEAYA 376 (392)
T ss_pred cHHHHcCCceEEEEcCCce-EEEEECCCCCCCCEEEECCCCCCCC--CCCCCCEEEEEEEECCCCCCHHHHHHHHHHH
Confidence 9999999999999999998 8999999999999999999999963 3578999999999999999999999999986
No 14
>PRK14280 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=4.3e-42 Score=321.02 Aligned_cols=178 Identities=23% Similarity=0.406 Sum_probs=162.4
Q ss_pred CCCCCCEEEEEecchhhhccCceEEEEeeEEEEeC----CCC--------------------------------------
Q 024831 82 LRKAAPIERTLPCSLEDLYKGTTKKMKISRDVIDA----SGR-------------------------------------- 119 (262)
Q Consensus 82 ~~~g~di~~~l~itLee~~~G~~k~i~~~r~~~~~----~G~-------------------------------------- 119 (262)
+++++|++++|+|||||+|+|++++|++.|.+.|. +|.
T Consensus 113 ~~kg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C 192 (376)
T PRK14280 113 PRQGADLQYTMTLTFEEAVFGKEKEIEIPKEETCDTCHGSGAKPGTSKETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHC 192 (376)
T ss_pred cccccCEEEEEEEEHHHHhCCceeEEEEeeeccCCCCCCcccCCCCCCccCCCCCCEEEEEEEeecCCceEEEEEEcCCC
Confidence 45789999999999999999999999999988773 110
Q ss_pred ------------------cccccEEEEEEeCCCCCCCceEEeCccccCCC-CCCCCcEEEEEEeeCCCCeeeeccceEEE
Q 024831 120 ------------------PNTTEEILTIEIKPGWKKGTKITFPEKGNELR-NVIPSDLIFIIDEKPHSLFKRDGNDLVVT 180 (262)
Q Consensus 120 ------------------~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~-~~~~gDlv~~i~~~~h~~f~R~G~DL~~~ 180 (262)
++.++++++|.||+|+++|++|+|+++|++.+ +..+|||+|+|++++|+.|+|+|+||+++
T Consensus 193 ~G~G~~~~~~C~~C~G~g~v~~~~~i~V~Ip~G~~~G~~i~l~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~ 272 (376)
T PRK14280 193 NGTGQEIKEKCPTCHGKGKVRKRKKINVKIPAGVDNGQQIRVSGEGEPGVNGGPAGDLYVVFRVRPHEFFERDGDDIYCE 272 (376)
T ss_pred CCCCceecCCCCCCCCceEEEEEEEEEEEeCCCCcCCcEEEEcccccCCCCCCCCcCEEEEEEEecCCCeEEecCCEEEE
Confidence 23456889999999999999999999999874 46789999999999999999999999999
Q ss_pred EEecHHHHhCCCEEEEecCCCcEEEEeeCCccCCCcEEEEcCCCCCCCCCCCCCCCEEEEEEEeCCCCCCHHHHHHHHhh
Q 024831 181 QKISLVEALTGYTVQLTTLDGRTLTVPINSVISPTYEEVIKGEGMPIPKEPSKRGNLRIKFNIKFPSKLTTEQKSGLKRL 260 (262)
Q Consensus 181 ~~I~l~~Al~G~~i~i~tldG~~l~v~i~~~~~~g~~~~i~g~GmP~~~~~~~rGDL~V~~~V~~P~~ls~~qk~~l~~~ 260 (262)
++|+|.+||+|+++.|+||||+ +.|+||+++++|++++|+|+|||... ...+|||||+|+|.||++||++||++|+++
T Consensus 273 ~~Isl~eAl~G~~~~i~tldg~-i~v~ip~g~~~g~~~~i~g~G~p~~~-~~~~GDL~v~~~v~~P~~Ls~~q~~~l~~l 350 (376)
T PRK14280 273 MPLTFAQAALGDEIEVPTLHGK-VKLKIPAGTQTGTQFRLKGKGVPNVR-GYGQGDQYVVVRVVTPTKLTDRQKELLREF 350 (376)
T ss_pred EecCHHHHhCCCEEEEecCCce-EEEEECCCCCCCcEEEEcCCCCCCCC-CCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 9999999999999999999997 89999999999999999999999765 347899999999999999999999999998
Q ss_pred C
Q 024831 261 I 261 (262)
Q Consensus 261 l 261 (262)
+
T Consensus 351 ~ 351 (376)
T PRK14280 351 A 351 (376)
T ss_pred H
Confidence 6
No 15
>PRK14298 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3.9e-42 Score=321.22 Aligned_cols=178 Identities=24% Similarity=0.372 Sum_probs=162.6
Q ss_pred CCCCCCEEEEEecchhhhccCceEEEEeeEEEEeC----CC-----------------C---------------------
Q 024831 82 LRKAAPIERTLPCSLEDLYKGTTKKMKISRDVIDA----SG-----------------R--------------------- 119 (262)
Q Consensus 82 ~~~g~di~~~l~itLee~~~G~~k~i~~~r~~~~~----~G-----------------~--------------------- 119 (262)
+++++|++++|+|||||+|+|++++|+++|.+.|. +| .
T Consensus 111 ~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C 190 (377)
T PRK14298 111 PRRGSDLRYDLYITLEEAAFGVRKDIDVPRAERCSTCSGTGAKPGTSPKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTC 190 (377)
T ss_pred CCCCCCEEEEEEEEHHHhhCCeEEEEEEEeeccCCCCCCCcccCCCCCCcCCCCCCccEEEEEEecCceeEEEEEeCCCC
Confidence 45788999999999999999999999999988772 11 0
Q ss_pred ------------------cccccEEEEEEeCCCCCCCceEEeCccccCC-CCCCCCcEEEEEEeeCCCCeeeeccceEEE
Q 024831 120 ------------------PNTTEEILTIEIKPGWKKGTKITFPEKGNEL-RNVIPSDLIFIIDEKPHSLFKRDGNDLVVT 180 (262)
Q Consensus 120 ------------------~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~-~~~~~gDlv~~i~~~~h~~f~R~G~DL~~~ 180 (262)
++.++++++|.|||||++|++|+|+++|++. ++..+|||+|+|++++|+.|+|+|+||+++
T Consensus 191 ~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IppG~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~ 270 (377)
T PRK14298 191 HGRGQVIESPCPVCSGTGKVRKTRKITVNVPAGADSGLRLKLSGEGEAGSPGAPSGDLYIVLHVKEHDYFERVGDDIISE 270 (377)
T ss_pred CCCCcccCCCCCCCCCccEEEEEEEEEecCCCCCCCCCEEEEecccCCCCCCCCCcCEEEEEEEecCCCeEEEcCcEEEE
Confidence 2345678999999999999999999999987 567899999999999999999999999999
Q ss_pred EEecHHHHhCCCEEEEecCCCcEEEEeeCCccCCCcEEEEcCCCCCCCCCCCCCCCEEEEEEEeCCCCCCHHHHHHHHhh
Q 024831 181 QKISLVEALTGYTVQLTTLDGRTLTVPINSVISPTYEEVIKGEGMPIPKEPSKRGNLRIKFNIKFPSKLTTEQKSGLKRL 260 (262)
Q Consensus 181 ~~I~l~~Al~G~~i~i~tldG~~l~v~i~~~~~~g~~~~i~g~GmP~~~~~~~rGDL~V~~~V~~P~~ls~~qk~~l~~~ 260 (262)
++|+|.+||+|+++.|+||||+ +.|+||+++++|++++|+|+|||..+ ...+|||||+|+|+||+.|+++|+++|+++
T Consensus 271 ~~Isl~eAl~G~~~~i~tldG~-i~v~ip~g~~~g~~lri~g~G~p~~~-~~~~GDL~V~~~V~~P~~ls~~~~~ll~~l 348 (377)
T PRK14298 271 IPISFTQAALGADIMVPTLYGK-VKMNIPPGTQTHSVFRLKDKGMPRLH-GHGKGDQLVKVIVKTPTKLTQEQKELLREF 348 (377)
T ss_pred EEeCHHHHhCCCeEEEecCCCC-EEEEeCCCcccCCEEEECCCCCCCCC-CCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 9999999999999999999998 89999999999999999999999765 356899999999999999999999999987
Q ss_pred C
Q 024831 261 I 261 (262)
Q Consensus 261 l 261 (262)
+
T Consensus 349 ~ 349 (377)
T PRK14298 349 D 349 (377)
T ss_pred H
Confidence 6
No 16
>PRK14284 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=4.2e-42 Score=322.59 Aligned_cols=179 Identities=26% Similarity=0.410 Sum_probs=163.5
Q ss_pred CCCCCCEEEEEecchhhhccCceEEEEeeEEEEeC----CC---------------------------------------
Q 024831 82 LRKAAPIERTLPCSLEDLYKGTTKKMKISRDVIDA----SG--------------------------------------- 118 (262)
Q Consensus 82 ~~~g~di~~~l~itLee~~~G~~k~i~~~r~~~~~----~G--------------------------------------- 118 (262)
+++++|++++|+|||||+|+||+++++++|.+.|. +|
T Consensus 128 ~~~g~d~~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G 207 (391)
T PRK14284 128 ARQGASKKVHITLSFEEAAKGVEKELLVSGYKSCDACSGSGANSSQGIKVCDRCKGSGQVVQSRGFFSMASTCPECGGEG 207 (391)
T ss_pred cCCCCCeEEEEEEEHHHHhCCeeEEEEEeeeccCCCCcccccCCCCCCeecCccCCeeEEEEEeceEEEEEECCCCCCCC
Confidence 45789999999999999999999999999987763 11
Q ss_pred ------------C-cccccEEEEEEeCCCCCCCceEEeCccccCCC-CCCCCcEEEEEEeeCCCCeeeeccceEEEEEec
Q 024831 119 ------------R-PNTTEEILTIEIKPGWKKGTKITFPEKGNELR-NVIPSDLIFIIDEKPHSLFKRDGNDLVVTQKIS 184 (262)
Q Consensus 119 ------------~-~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~-~~~~gDlv~~i~~~~h~~f~R~G~DL~~~~~I~ 184 (262)
+ ++.++++++|+|||||++|++|+|+|+|++.+ +..+|||+|+|++++|+.|+|+|+||+++++|+
T Consensus 208 ~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Is 287 (391)
T PRK14284 208 RVITDPCSVCRGQGRIKDKRSVHVHIPAGVDSGMRLKMEGYGDAGQNGAPAGDLYVFIDVEPHPVFERRGDDLILELPIG 287 (391)
T ss_pred cccCCcCCCCCCcceecceEEEEEEECCCCCCCCEEEEeccccCCCCCCCCCCEEEEEEEecCCCceeecCCEEEEEEec
Confidence 0 23456899999999999999999999999986 567899999999999999999999999999999
Q ss_pred HHHHhCCCEEEEecCC-CcEEEEeeCCccCCCcEEEEcCCCCCCCCCCCCCCCEEEEEEEeCCCCCCHHHHHHHHhhC
Q 024831 185 LVEALTGYTVQLTTLD-GRTLTVPINSVISPTYEEVIKGEGMPIPKEPSKRGNLRIKFNIKFPSKLTTEQKSGLKRLI 261 (262)
Q Consensus 185 l~~Al~G~~i~i~tld-G~~l~v~i~~~~~~g~~~~i~g~GmP~~~~~~~rGDL~V~~~V~~P~~ls~~qk~~l~~~l 261 (262)
|.+||+|++++|+||| ++.+.|+||+++++|++++|+|+|||..+ ...+|||||+|+|.+|+.|+++|+++|++++
T Consensus 288 l~eAl~G~~~~v~tld~g~~i~v~Ip~g~~~g~~~~i~g~G~p~~~-~~~~GDL~V~~~v~~P~~l~~~q~~ll~~l~ 364 (391)
T PRK14284 288 FVDAALGMKKEIPTLLKEGTCRLTIPEGIQSGTILKVRGQGFPNVH-GKGRGDLLVRISVETPQNLSEEQKELLRQFA 364 (391)
T ss_pred HHHHhCCCeEEEeecCCCcEEEEEECCccCCCeEEEECCCCCCCCC-CCCCCcEEEEEEEECCCCCCHHHHHHHHHHH
Confidence 9999999999999999 67799999999999999999999999765 3478999999999999999999999999986
No 17
>PRK14287 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=8.5e-42 Score=318.46 Aligned_cols=178 Identities=20% Similarity=0.408 Sum_probs=161.7
Q ss_pred CCCCCCEEEEEecchhhhccCceEEEEeeEEEEeC----CCC--------------------------------------
Q 024831 82 LRKAAPIERTLPCSLEDLYKGTTKKMKISRDVIDA----SGR-------------------------------------- 119 (262)
Q Consensus 82 ~~~g~di~~~l~itLee~~~G~~k~i~~~r~~~~~----~G~-------------------------------------- 119 (262)
+++++|++++|+|||+|+|+|++++|++.|.+.|. +|.
T Consensus 108 ~~~g~d~~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C 187 (371)
T PRK14287 108 PRQGADLQYTMTLEFKEAVFGKETEIEIPREETCGTCHGSGAKPGTKPETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHC 187 (371)
T ss_pred CCCCCCEEEEEEEEHHHhcCCeEEEEEEeeeccCCCCCCcccCCCCCCcccCCCCCEEEEEEEEecCCceEEEEEeCCCC
Confidence 35789999999999999999999999999988773 110
Q ss_pred ------------------cccccEEEEEEeCCCCCCCceEEeCccccCCC-CCCCCcEEEEEEeeCCCCeeeeccceEEE
Q 024831 120 ------------------PNTTEEILTIEIKPGWKKGTKITFPEKGNELR-NVIPSDLIFIIDEKPHSLFKRDGNDLVVT 180 (262)
Q Consensus 120 ------------------~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~-~~~~gDlv~~i~~~~h~~f~R~G~DL~~~ 180 (262)
++.+.++++|.||+||++|++|+|+++|++.+ +..+|||+|+|++++|+.|+|+|+||+++
T Consensus 188 ~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~ 267 (371)
T PRK14287 188 EGTGKIIKQKCATCGGKGKVRKRKKINVKVPAGIDHGQQLRVSGQGEAGVNGGPPGDLYVVFNVKPHEFFERDGDDIYCE 267 (371)
T ss_pred CCCCccccccCCCCCCeeEEeeeEEEEEEECCcCCCCCEEEEccCCcCCCCCCCCccEEEEEEEecCCCEEEecCCeEEE
Confidence 12345789999999999999999999999874 55789999999999999999999999999
Q ss_pred EEecHHHHhCCCEEEEecCCCcEEEEeeCCccCCCcEEEEcCCCCCCCCCCCCCCCEEEEEEEeCCCCCCHHHHHHHHhh
Q 024831 181 QKISLVEALTGYTVQLTTLDGRTLTVPINSVISPTYEEVIKGEGMPIPKEPSKRGNLRIKFNIKFPSKLTTEQKSGLKRL 260 (262)
Q Consensus 181 ~~I~l~~Al~G~~i~i~tldG~~l~v~i~~~~~~g~~~~i~g~GmP~~~~~~~rGDL~V~~~V~~P~~ls~~qk~~l~~~ 260 (262)
+.|+|.+||+|++++|+||||+ +.|+||+++++|++++|+|+|||..+ ...+|||||+|+|.+|+.|+.+|+++|+++
T Consensus 268 ~~Isl~eAl~G~~~~i~~ldg~-i~v~ip~g~~~g~~~ri~g~G~p~~~-~~~~GDL~V~~~v~~P~~l~~~q~~ll~~l 345 (371)
T PRK14287 268 MPLTFPQVALGDEIEVPTLNGK-VKLKIPAGTQTGTSFRLRGKGVPNVH-GRGQGDQHVQVRVVTPKNLTEKEKELMREF 345 (371)
T ss_pred EeccHHHHhCCCEEEEEcCCCC-EEEEECCCccCCcEEEEcCCCccCCC-CCCCCCEEEEEEEEcCCCCCHHHHHHHHHH
Confidence 9999999999999999999998 89999999999999999999999765 346899999999999999999999999998
Q ss_pred C
Q 024831 261 I 261 (262)
Q Consensus 261 l 261 (262)
+
T Consensus 346 ~ 346 (371)
T PRK14287 346 A 346 (371)
T ss_pred H
Confidence 6
No 18
>PRK14299 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.3e-41 Score=306.27 Aligned_cols=159 Identities=32% Similarity=0.549 Sum_probs=149.1
Q ss_pred CCCCCCEEEEEecchhhhccCceEEEEeeEEEEeCCCCcccccEEEEEEeCCCCCCCceEEeCccccCCCCCCCCcEEEE
Q 024831 82 LRKAAPIERTLPCSLEDLYKGTTKKMKISRDVIDASGRPNTTEEILTIEIKPGWKKGTKITFPEKGNELRNVIPSDLIFI 161 (262)
Q Consensus 82 ~~~g~di~~~l~itLee~~~G~~k~i~~~r~~~~~~G~~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~gDlv~~ 161 (262)
++++.|+++++.|||+|+|+||++++++. + ++++|+||||+++|++|+++++|++. |||+|+
T Consensus 126 ~~~g~dl~~~l~isL~ea~~G~~~~i~l~-------g------~~~~V~Ip~G~~~G~~ir~~g~G~~~-----GDL~v~ 187 (291)
T PRK14299 126 ARKGRDLEAELPLTLEEAYRGGEKVVEVA-------G------ERLSVRIPPGVREGQVIRLAGKGRQG-----GDLYLV 187 (291)
T ss_pred CCCCCCEEEEEEecHHHHhCCCeEEEeeC-------C------EEEEEecCCCcCCCcEEEECCCCCCC-----CCEEEE
Confidence 45789999999999999999999999764 2 58999999999999999999999863 999999
Q ss_pred EEeeCCCCeeeeccceEEEEEecHHHHhCCCEEEEecCCCcEEEEeeCCccCCCcEEEEcCCCCCCCCCCCCCCCEEEEE
Q 024831 162 IDEKPHSLFKRDGNDLVVTQKISLVEALTGYTVQLTTLDGRTLTVPINSVISPTYEEVIKGEGMPIPKEPSKRGNLRIKF 241 (262)
Q Consensus 162 i~~~~h~~f~R~G~DL~~~~~I~l~~Al~G~~i~i~tldG~~l~v~i~~~~~~g~~~~i~g~GmP~~~~~~~rGDL~V~~ 241 (262)
|++++|+.|+|+|+||+++++|+|.+||+|++++|+||||+ +.|+||+++++|++++|+|+|||.. ++.+|||||+|
T Consensus 188 i~v~~h~~f~R~G~DL~~~~~Isl~eAl~G~~~~v~tldG~-~~v~ip~~~~~g~~~rl~g~G~p~~--~~~~GDL~v~~ 264 (291)
T PRK14299 188 VRLLPHPVFRLEGDDLYATVDVPAPIAVVGGKVRVMTLDGP-VEVTIPPRTQAGRKLRLKGKGWPRG--PAGRGDQYAEV 264 (291)
T ss_pred EEEcCCCCeEEECCEEEEEEecCHHHHhCCCEEEEECCCCC-EEEEeCCCcCCCCEEEECCCCCCCC--CCCCCCEEEEE
Confidence 99999999999999999999999999999999999999997 8999999999999999999999963 35789999999
Q ss_pred EEeCCCCCCHHHHHHHHhhC
Q 024831 242 NIKFPSKLTTEQKSGLKRLI 261 (262)
Q Consensus 242 ~V~~P~~ls~~qk~~l~~~l 261 (262)
+|.+|+.|+++|+++|++++
T Consensus 265 ~V~~P~~l~~~~~~~l~~l~ 284 (291)
T PRK14299 265 RITIPTRPTPEEERLYKQLA 284 (291)
T ss_pred EEECCCCCCHHHHHHHHHHH
Confidence 99999999999999999875
No 19
>PRK14291 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=5.1e-41 Score=314.42 Aligned_cols=179 Identities=33% Similarity=0.497 Sum_probs=163.8
Q ss_pred CCCCCCEEEEEecchhhhccCceEEEEeeEEEEeC----CCC--------------------------------------
Q 024831 82 LRKAAPIERTLPCSLEDLYKGTTKKMKISRDVIDA----SGR-------------------------------------- 119 (262)
Q Consensus 82 ~~~g~di~~~l~itLee~~~G~~k~i~~~r~~~~~----~G~-------------------------------------- 119 (262)
+++++|++++|+|||||||+|++++|+++|.+.|. +|.
T Consensus 126 ~~~g~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G 205 (382)
T PRK14291 126 PVKGEDIYQTVEISLEEAYTGTTVSLEVPRYVPCEACGGTGYDPGSGEKVCPTCGGSGEIYQRGGFFRISQTCPTCGGEG 205 (382)
T ss_pred ccCCCCEEEEEEEEHHHhhCCEEEEEEEeeeccCCCCccccCCCCCCCccCCCCCCceEEEEecceEEEEecCCCCCCce
Confidence 45789999999999999999999999999988773 110
Q ss_pred -------------cccccEEEEEEeCCCCCCCceEEeCccccCCC-CCCCCcEEEEEEeeCCCCeeeeccceEEEEEecH
Q 024831 120 -------------PNTTEEILTIEIKPGWKKGTKITFPEKGNELR-NVIPSDLIFIIDEKPHSLFKRDGNDLVVTQKISL 185 (262)
Q Consensus 120 -------------~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~-~~~~gDlv~~i~~~~h~~f~R~G~DL~~~~~I~l 185 (262)
++.++++++|+|||||++|++|+|+|+|++.+ +..+|||+|+|++++|+.|+|+|+||++++.|+|
T Consensus 206 ~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~g~~~GDL~v~i~~~~h~~F~r~G~DL~~~~~Isl 285 (382)
T PRK14291 206 VLREPCSKCNGRGLVIKKETIKVRIPPGVDNGSKLRVPGKGHAGRFGGPPGDLYIIVKVKPHPLFERRGDNLYLDVNITV 285 (382)
T ss_pred EEccCCCCCCCCceEEeeeEEEEEeCCCCCCCCEEEEecCcCCCCCCCCCccEEEEEEEccCCCeeeecCCeEEEEEeeH
Confidence 23556899999999999999999999999874 6789999999999999999999999999999999
Q ss_pred HHHhCCCEEEEecCCCcEEEEeeCCccCCCcEEEEcCCCCCCCCCCCCCCCEEEEEEEeCCC--CCC------HHHHHHH
Q 024831 186 VEALTGYTVQLTTLDGRTLTVPINSVISPTYEEVIKGEGMPIPKEPSKRGNLRIKFNIKFPS--KLT------TEQKSGL 257 (262)
Q Consensus 186 ~~Al~G~~i~i~tldG~~l~v~i~~~~~~g~~~~i~g~GmP~~~~~~~rGDL~V~~~V~~P~--~ls------~~qk~~l 257 (262)
.+||+|+++.|+|+||+.+.|+||+++++|++++|+|+|||..+ ...+|||||+|+|.||+ .|| ++||++|
T Consensus 286 ~eAl~G~~~~i~~ldG~~l~V~Ip~g~~~G~~i~i~G~G~p~~~-~~~~GDL~V~~~V~~P~~~~ls~~~~~~~~~~~~~ 364 (382)
T PRK14291 286 AEAVLGTELEVPLLDGKKEKVKIPPGTKEGDKIRVPGKGMPRLK-GSGYGDLVVRVHIDVPKISMLSKLMGDGKKAKKLL 364 (382)
T ss_pred HHHhCCCEEEEecCCCCEEEEEECCccCCCCEEEECCCCCCCCC-CCCCCCEEEEEEEEeCCCcCcCccccCCHHHHHHH
Confidence 99999999999999999899999999999999999999999765 34689999999999997 599 9999999
Q ss_pred HhhC
Q 024831 258 KRLI 261 (262)
Q Consensus 258 ~~~l 261 (262)
++++
T Consensus 365 ~~l~ 368 (382)
T PRK14291 365 KELD 368 (382)
T ss_pred HHHH
Confidence 9875
No 20
>PRK14294 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.1e-40 Score=310.63 Aligned_cols=178 Identities=27% Similarity=0.441 Sum_probs=162.5
Q ss_pred CCCCCCEEEEEecchhhhccCceEEEEeeEEEEeC----CC---------------------------------------
Q 024831 82 LRKAAPIERTLPCSLEDLYKGTTKKMKISRDVIDA----SG--------------------------------------- 118 (262)
Q Consensus 82 ~~~g~di~~~l~itLee~~~G~~k~i~~~r~~~~~----~G--------------------------------------- 118 (262)
+++++|++++|+|||||+|+|++++|++.|.+.|. +|
T Consensus 114 ~~~g~d~~~~l~lslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G 193 (366)
T PRK14294 114 VRAGADLRYDLTLPFLEAAFGTEKEIRIQKLETCEECHGSGCEPGTSPTTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMG 193 (366)
T ss_pred CCCCCCceEEEEeeHHHhcCCeEEEEEeeecccCCCCCCccccCCCCcccCCCcCCeEEEEEEeeeEEEEeeCCCCCCcC
Confidence 45789999999999999999999999999987762 11
Q ss_pred ------------C-cccccEEEEEEeCCCCCCCceEEeCccccCC-CCCCCCcEEEEEEeeCCCCeeeeccceEEEEEec
Q 024831 119 ------------R-PNTTEEILTIEIKPGWKKGTKITFPEKGNEL-RNVIPSDLIFIIDEKPHSLFKRDGNDLVVTQKIS 184 (262)
Q Consensus 119 ------------~-~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~-~~~~~gDlv~~i~~~~h~~f~R~G~DL~~~~~I~ 184 (262)
+ ++.++++++|.||+|+++|++|+|+++|++. .+..+|||+|+|++++|+.|+|+|+||+++++|+
T Consensus 194 ~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDl~v~i~v~~h~~F~R~G~DL~~~~~Is 273 (366)
T PRK14294 194 KVIVSPCKTCHGQGRVRVSKTVQVKIPAGVDTGSRLRLRGEGEAGVRGGPPGDLYVFLTVEPHEFFERDGNDVHCKVPIS 273 (366)
T ss_pred eecCcCCCCCCCceEeecceeEEEecCCCCcCCcEEEEccCccCCCCCCCCCcEEEEEEEccCCcceecCCCEEEEEEeC
Confidence 0 2455689999999999999999999999987 4667899999999999999999999999999999
Q ss_pred HHHHhCCCEEEEecCCCcEEEEeeCCccCCCcEEEEcCCCCCCCCCCCCCCCEEEEEEEeCCCCCCHHHHHHHHhhC
Q 024831 185 LVEALTGYTVQLTTLDGRTLTVPINSVISPTYEEVIKGEGMPIPKEPSKRGNLRIKFNIKFPSKLTTEQKSGLKRLI 261 (262)
Q Consensus 185 l~~Al~G~~i~i~tldG~~l~v~i~~~~~~g~~~~i~g~GmP~~~~~~~rGDL~V~~~V~~P~~ls~~qk~~l~~~l 261 (262)
|.+||+|++++|+||||+ +.|.||+++++|++++|+|+|||..+ ...+|||||+|+|.+|+.|+++|+++|++++
T Consensus 274 l~eAl~G~~~~i~tldG~-~~v~ip~g~~~g~~iri~G~G~p~~~-~~~~GDL~V~~~v~~P~~l~~~q~~ll~~~~ 348 (366)
T PRK14294 274 FVQAALGAQIEVPTLEGE-RELKIPKGTQPGDIFRFKGKGIPSLR-GGGRGDQIIEVEVKVPTRLTKKQEELLTEFA 348 (366)
T ss_pred HHHHhCCCeEEEECCCCc-EEEEECCCcCCCCEEEECCCCCCCCC-CCCCCCEEEEEEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999997 79999999999999999999999765 3468999999999999999999999999986
No 21
>PRK14282 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.1e-40 Score=310.89 Aligned_cols=179 Identities=27% Similarity=0.415 Sum_probs=163.0
Q ss_pred CCCCCCEEEEEecchhhhccCceEEEEeeEEEEeC----CC-----------------C---------------------
Q 024831 82 LRKAAPIERTLPCSLEDLYKGTTKKMKISRDVIDA----SG-----------------R--------------------- 119 (262)
Q Consensus 82 ~~~g~di~~~l~itLee~~~G~~k~i~~~r~~~~~----~G-----------------~--------------------- 119 (262)
+++++|++++|+|||||+|+|++++|+++|.+.|. +| .
T Consensus 122 ~~~g~di~~~l~~slee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C 201 (369)
T PRK14282 122 ARRGEDIRYEIEVTLSDLINGAEIPVEYDRYETCPHCGGTGVEPGSGYVTCPKCHGTGRIREERRSFFGVFVSERTCERC 201 (369)
T ss_pred CCCCCCeEEEEEEEHHHhcCCeEEEEEeeecccCCCCCccCCCCCCCCcCCCCCCCcCEEEEEEEccCcceEEEEECCCC
Confidence 45789999999999999999999999999987762 11 0
Q ss_pred ------------------cccccEEEEEEeCCCCCCCceEEeCccccCCC-CCCCCcEEEEEEeeCCCCeeeeccceEEE
Q 024831 120 ------------------PNTTEEILTIEIKPGWKKGTKITFPEKGNELR-NVIPSDLIFIIDEKPHSLFKRDGNDLVVT 180 (262)
Q Consensus 120 ------------------~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~-~~~~gDlv~~i~~~~h~~f~R~G~DL~~~ 180 (262)
++.++++++|+|||||++|++|+|+++|++.+ +..+|||+|+|++++|+.|+|+|+||+++
T Consensus 202 ~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDl~i~i~v~~h~~F~r~G~DL~~~ 281 (369)
T PRK14282 202 GGTGKIPGEYCHECGGSGRIRRRVRTTVKIPAGVEDGTVLRITGGGNAGYYGGPYGDLYVIVRVRPDPRFKRSGSDLIYD 281 (369)
T ss_pred CCcceeCCCCCCCCCCceeEEEEEEEEEEeCCCCCCCCEEEEecccCCCCCCCCCCCEEEEEEEecCCcEEEecCCEEEE
Confidence 23445789999999999999999999999874 56789999999999999999999999999
Q ss_pred EEecHHHHhCCCEEEEecCCCcEEEEeeCCccCCCcEEEEcCCCCCCCCCCCCCCCEEEEEEEeCCCCCCHHHHHHHHhh
Q 024831 181 QKISLVEALTGYTVQLTTLDGRTLTVPINSVISPTYEEVIKGEGMPIPKEPSKRGNLRIKFNIKFPSKLTTEQKSGLKRL 260 (262)
Q Consensus 181 ~~I~l~~Al~G~~i~i~tldG~~l~v~i~~~~~~g~~~~i~g~GmP~~~~~~~rGDL~V~~~V~~P~~ls~~qk~~l~~~ 260 (262)
++|+|.+||+|++++|+|+||+.+.|+||+++++|++++|+|+|||..+ ...+|||||+|+|.+|+.|+.+++++|+++
T Consensus 282 ~~Isl~eAl~G~~~~i~~ldG~~i~v~Ip~g~~~g~~iri~GkG~p~~~-~~~~GDL~V~~~v~~P~~l~~~~~~ll~~l 360 (369)
T PRK14282 282 VTIDYLQAILGTTVEVPLPEGGTTMLKIPPGTQPETVFRLKGKGLPNMR-YGRRGDLIVNVHVEIPKRLSREERKLLKEL 360 (369)
T ss_pred EEeCHHHHhCCCEEEEeCCCCcEEEEEeCCCcCCCCEEEECCCCCCCCC-CCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 9999999999999999999999899999999999999999999999654 356899999999999999999999999998
Q ss_pred C
Q 024831 261 I 261 (262)
Q Consensus 261 l 261 (262)
+
T Consensus 361 ~ 361 (369)
T PRK14282 361 A 361 (369)
T ss_pred H
Confidence 6
No 22
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=100.00 E-value=1.2e-40 Score=309.24 Aligned_cols=179 Identities=28% Similarity=0.460 Sum_probs=163.2
Q ss_pred CCCCCCEEEEEecchhhhccCceEEEEeeEEEEeC----CCC--------------------------------------
Q 024831 82 LRKAAPIERTLPCSLEDLYKGTTKKMKISRDVIDA----SGR-------------------------------------- 119 (262)
Q Consensus 82 ~~~g~di~~~l~itLee~~~G~~k~i~~~r~~~~~----~G~-------------------------------------- 119 (262)
+++++|++++|+|||||+|+|++++++++|.+.|. +|.
T Consensus 113 ~~~~~d~~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C 192 (354)
T TIGR02349 113 PRRGEDLRYDLELTFEEAVFGVEKEIEIPRKESCETCHGTGAKPGTDPKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTC 192 (354)
T ss_pred CCCCCCeEEEEEEEHHHHhCCeeEEEEeecCCcCCCCCCCCCCCCCCCccCCCCCCeeEEEEEEeccCCceEEEEecCCC
Confidence 45789999999999999999999999999988773 110
Q ss_pred ------------------cccccEEEEEEeCCCCCCCceEEeCccccCCC-CCCCCcEEEEEEeeCCCCeeeeccceEEE
Q 024831 120 ------------------PNTTEEILTIEIKPGWKKGTKITFPEKGNELR-NVIPSDLIFIIDEKPHSLFKRDGNDLVVT 180 (262)
Q Consensus 120 ------------------~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~-~~~~gDlv~~i~~~~h~~f~R~G~DL~~~ 180 (262)
++.++++++|+||+||++|++|+|+++|++.+ +..+|||+|+|++++|+.|+|+|+||+++
T Consensus 193 ~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDl~v~i~v~~h~~f~r~g~DL~~~ 272 (354)
T TIGR02349 193 GGEGKIIKEPCSTCKGKGRVKERKTITVKIPAGVDTGQRLRVSGKGNAGENGGPNGDLYVVIRVKPHKIFERDGNDLYIE 272 (354)
T ss_pred CCcceecCCCCCCCCCCcEecccceEEEEECCCCCCCCEEEEecCccCCCCCCCCCCEEEEEEEecCcceEEecCCEEEE
Confidence 24556889999999999999999999999864 56789999999999999999999999999
Q ss_pred EEecHHHHhCCCEEEEecCCCcEEEEeeCCccCCCcEEEEcCCCCCCCCCCCCCCCEEEEEEEeCCCCCCHHHHHHHHhh
Q 024831 181 QKISLVEALTGYTVQLTTLDGRTLTVPINSVISPTYEEVIKGEGMPIPKEPSKRGNLRIKFNIKFPSKLTTEQKSGLKRL 260 (262)
Q Consensus 181 ~~I~l~~Al~G~~i~i~tldG~~l~v~i~~~~~~g~~~~i~g~GmP~~~~~~~rGDL~V~~~V~~P~~ls~~qk~~l~~~ 260 (262)
+.|+|.+||+|++++|+|||| .+.|.||+++++|++++|+|+|||..+ ...+|||||+|+|.||+.|+++|+++|+++
T Consensus 273 ~~isl~eAl~G~~~~i~~ldG-~i~v~ip~g~~~g~~~~i~g~G~p~~~-~~~~GDL~i~~~v~~P~~l~~~~~~~l~~~ 350 (354)
T TIGR02349 273 VPISFTQAILGGEIEVPTLDG-DVKLKIPAGTQSGTVFRLKGKGVPRLR-GNGRGDLLVTVKVETPKNLSKEQKELLEEL 350 (354)
T ss_pred EEeCHHHHhCCCeEEEecCCc-eEEEEECCcccCCcEEEECCCCcCCCC-CCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 999999999999999999999 599999999999999999999999765 347899999999999999999999999998
Q ss_pred CC
Q 024831 261 IP 262 (262)
Q Consensus 261 l~ 262 (262)
|.
T Consensus 351 ~~ 352 (354)
T TIGR02349 351 AE 352 (354)
T ss_pred Hh
Confidence 73
No 23
>PRK14290 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2e-40 Score=308.77 Aligned_cols=177 Identities=25% Similarity=0.388 Sum_probs=161.3
Q ss_pred CCCCCEEEEEecchhhhccCceEEEEeeEEEEeCC----C----------------C-----------------------
Q 024831 83 RKAAPIERTLPCSLEDLYKGTTKKMKISRDVIDAS----G----------------R----------------------- 119 (262)
Q Consensus 83 ~~g~di~~~l~itLee~~~G~~k~i~~~r~~~~~~----G----------------~----------------------- 119 (262)
++++|++++|+|||+|+|+|++++|++.|.+.|.. | .
T Consensus 120 ~~~~di~~~l~lsLee~~~G~~~~i~~~r~~~C~~C~G~g~~~~~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G 199 (365)
T PRK14290 120 NIDLDIYTNLDISLEDAYYGTEKRIKYRRNAMCPDCSGTGAKNGKLITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGG 199 (365)
T ss_pred CCCCCEEEEEEecHHHhcCCEEEEEEeeecccCCCCccccCCCCCCccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCC
Confidence 35789999999999999999999999999887631 1 0
Q ss_pred ----------------cccccEEEEEEeCCCCCCCceEEeCccccCCCCCCCCcEEEEEEeeCCCCeeeeccceEEEEEe
Q 024831 120 ----------------PNTTEEILTIEIKPGWKKGTKITFPEKGNELRNVIPSDLIFIIDEKPHSLFKRDGNDLVVTQKI 183 (262)
Q Consensus 120 ----------------~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~gDlv~~i~~~~h~~f~R~G~DL~~~~~I 183 (262)
++.+.++++|.||||+++|++|+|+|+|++ ++..+|||+|+|++++|+.|+|+|+||+++++|
T Consensus 200 ~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~-~~~~~GDL~v~v~v~~h~~F~R~G~DL~~~~~I 278 (365)
T PRK14290 200 RGRIPEEKCPRCNGTGTVVVNEDISVKIPKGATDNLRLRVKGKGQS-YGGRTGDLYVVLRVNNDPNIQRINDDLYVDQKI 278 (365)
T ss_pred ceeEccCCCCCCCCceeEEEeeEEEEEECCCCCCCcEEEEccccCC-CCCCCCCEEEEEEEcCCCCEEEecCCEEEEEEe
Confidence 234567899999999999999999999986 677899999999999999999999999999999
Q ss_pred cHHHHhCCCEEEEecCCCcEEEEeeCCccCCCcEEEEcCCCCCCCCCCCCCCCEEEEEEEeCCCCCCHHHHHHHHhhCC
Q 024831 184 SLVEALTGYTVQLTTLDGRTLTVPINSVISPTYEEVIKGEGMPIPKEPSKRGNLRIKFNIKFPSKLTTEQKSGLKRLIP 262 (262)
Q Consensus 184 ~l~~Al~G~~i~i~tldG~~l~v~i~~~~~~g~~~~i~g~GmP~~~~~~~rGDL~V~~~V~~P~~ls~~qk~~l~~~l~ 262 (262)
+|.+||+|+++.|+|++|+ +.|+||+++++|++++|+|+|||... ...+|||||+|+|.+|+.|+++|+++|+++|+
T Consensus 279 sl~eAl~G~~~~I~~~~g~-i~V~Ip~g~~~g~~iri~g~G~p~~~-~~~~GDL~V~~~V~~P~~l~~~~~~ll~~~~~ 355 (365)
T PRK14290 279 NFPQAALGGEIEIKLFREK-YNLKIPEGTQPGEVLKIKGAGMPHLN-GHGSGDLLVRINVEVPKRLTSKQKELIREFFD 355 (365)
T ss_pred CHHHHhCCCEEEEEcCCce-EEEEECCccCCCcEEEECCCCCCCCC-CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHH
Confidence 9999999999999999996 99999999999999999999999755 34689999999999999999999999999874
No 24
>PRK10767 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.2e-40 Score=309.18 Aligned_cols=178 Identities=29% Similarity=0.432 Sum_probs=162.4
Q ss_pred CCCCCCEEEEEecchhhhccCceEEEEeeEEEEeC----CCC--------------------------------------
Q 024831 82 LRKAAPIERTLPCSLEDLYKGTTKKMKISRDVIDA----SGR-------------------------------------- 119 (262)
Q Consensus 82 ~~~g~di~~~l~itLee~~~G~~k~i~~~r~~~~~----~G~-------------------------------------- 119 (262)
+++++|++++|+|||||+|+|++++|++.|.+.|. +|.
T Consensus 112 ~~~g~di~~~l~vsLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G 191 (371)
T PRK10767 112 ARRGADLRYNMEITLEEAVRGVTKEIRIPTLVTCDTCHGSGAKPGTSPKTCPTCHGAGQVRMQQGFFTVQQTCPTCHGRG 191 (371)
T ss_pred CCCCCCeEEEEEeehHHhhCCeeEEEeeeecccCCCCCCcccCCCCCCccCCCCCCeeEEEEeeceEEEEEeCCCCCCce
Confidence 45789999999999999999999999999988763 110
Q ss_pred --------------cccccEEEEEEeCCCCCCCceEEeCccccCC-CCCCCCcEEEEEEeeCCCCeeeeccceEEEEEec
Q 024831 120 --------------PNTTEEILTIEIKPGWKKGTKITFPEKGNEL-RNVIPSDLIFIIDEKPHSLFKRDGNDLVVTQKIS 184 (262)
Q Consensus 120 --------------~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~-~~~~~gDlv~~i~~~~h~~f~R~G~DL~~~~~I~ 184 (262)
++.+.++++|+|||||++|++|+|+++|++. ++..+|||+|+|++++|+.|+|+|+||++++.|+
T Consensus 192 ~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Is 271 (371)
T PRK10767 192 KIIKDPCKKCHGQGRVEKEKTLSVKIPAGVDTGDRIRLSGEGEAGERGGPAGDLYVQIHVKEHPIFERDGNDLYCEVPIS 271 (371)
T ss_pred eECCCCCCCCCCCceEeeeeeEEEecCCCCCCCcEEEEecCccCCCCCCCCcCEEEEEEEeeCCCEEEecCCEEEEEEeC
Confidence 2345678999999999999999999999986 4567899999999999999999999999999999
Q ss_pred HHHHhCCCEEEEecCCCcEEEEeeCCccCCCcEEEEcCCCCCCCCCCCCCCCEEEEEEEeCCCCCCHHHHHHHHhhC
Q 024831 185 LVEALTGYTVQLTTLDGRTLTVPINSVISPTYEEVIKGEGMPIPKEPSKRGNLRIKFNIKFPSKLTTEQKSGLKRLI 261 (262)
Q Consensus 185 l~~Al~G~~i~i~tldG~~l~v~i~~~~~~g~~~~i~g~GmP~~~~~~~rGDL~V~~~V~~P~~ls~~qk~~l~~~l 261 (262)
|.+||+|++++|+||||+ +.|+||+++++|++++|+|+|||..+ ...+|||||+|+|.||+.|+++|+++|++++
T Consensus 272 l~eAl~G~~~~i~~ldG~-i~v~ip~g~~~g~~~~i~g~G~p~~~-~~~~GDL~v~~~v~~P~~l~~~~~~ll~~l~ 346 (371)
T PRK10767 272 FTTAALGGEIEVPTLDGR-VKLKIPEGTQTGKLFRLRGKGVKSVR-SGARGDLYCQVVVETPVNLTKRQKELLEEFE 346 (371)
T ss_pred HHHHhCCCeEEEecCCCc-EEEEeCCCCCCCCEEEECCCCcCCCC-CCCCCCEEEEEEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999995 99999999999999999999999765 3578999999999999999999999999986
No 25
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=100.00 E-value=9.8e-40 Score=297.63 Aligned_cols=176 Identities=22% Similarity=0.305 Sum_probs=160.8
Q ss_pred CCCCCCEEEEEecchhhhccCceEEEEeeEEEEeCCCCccc-ccEEEEEEeCCCCCCCceEEeCccccCCC-CCCCCcEE
Q 024831 82 LRKAAPIERTLPCSLEDLYKGTTKKMKISRDVIDASGRPNT-TEEILTIEIKPGWKKGTKITFPEKGNELR-NVIPSDLI 159 (262)
Q Consensus 82 ~~~g~di~~~l~itLee~~~G~~k~i~~~r~~~~~~G~~~~-~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~-~~~~gDlv 159 (262)
++++.|++++++|||+|+|+||++++++++.++|+.|.... ..++++|+||+||++|++|+++++|++.. +..+|||+
T Consensus 114 ~~kg~di~~~v~isLee~~~G~~k~i~~~~~~~~g~G~~~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDl~ 193 (306)
T PRK10266 114 AARGHDIEIEVAVFLEETLTEHKRTISYNLPVYNAFGMIEQEIPKTLNVKIPAGVGNGQRIRLKGQGTPGENGGPNGDLW 193 (306)
T ss_pred CCCCCceEEEEEEEHHHhcCCceEEEEEecccccCCCeEEEeeeEEEEEEECCCCcCCcEEEEecCCcCCCCCCCCccEE
Confidence 35689999999999999999999999999888776663222 23689999999999999999999999874 45689999
Q ss_pred EEEEeeCCCCeeeeccceEEEEEecHHHHhCCCEEEEecCCCcEEEEeeCCccCCCcEEEEcCCCCCCCCCCCCCCCEEE
Q 024831 160 FIIDEKPHSLFKRDGNDLVVTQKISLVEALTGYTVQLTTLDGRTLTVPINSVISPTYEEVIKGEGMPIPKEPSKRGNLRI 239 (262)
Q Consensus 160 ~~i~~~~h~~f~R~G~DL~~~~~I~l~~Al~G~~i~i~tldG~~l~v~i~~~~~~g~~~~i~g~GmP~~~~~~~rGDL~V 239 (262)
|+|++++|+.|+|+|+||+++++|+|.+||+|++++|+|+||+ +.|+||+++++|++++|+|+|||.. +.+|||||
T Consensus 194 v~i~v~ph~~f~r~g~DL~~~~~Isl~~al~G~~~~i~~~~g~-v~v~ip~g~~~g~~~ri~g~G~p~~---~~~GdL~v 269 (306)
T PRK10266 194 LVIHIAPHPLFDIVGQDLEIVVPLAPWEAALGAKVTVPTLKES-ILLTIPPGSQAGQRLRVKGKGLVSK---KQTGDLYA 269 (306)
T ss_pred EEEEEcCCCCeEEeCCceEEEEecCHHHHhCCCEEEeeCCCcc-EEEEeCCCcCCCCEEEECCCCCCCC---CCCCCEEE
Confidence 9999999999999999999999999999999999999999998 8999999999999999999999964 35899999
Q ss_pred EEEEeCCCCCCHHHHHHHHhhC
Q 024831 240 KFNIKFPSKLTTEQKSGLKRLI 261 (262)
Q Consensus 240 ~~~V~~P~~ls~~qk~~l~~~l 261 (262)
+|+|.+|++|+++||++|++++
T Consensus 270 ~~~v~~P~~l~~~q~~l~~~l~ 291 (306)
T PRK10266 270 VLKIVMPPKPDEKTAALWQQLA 291 (306)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 9999999999999999999975
No 26
>PRK14301 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=4e-40 Score=307.39 Aligned_cols=178 Identities=27% Similarity=0.426 Sum_probs=163.2
Q ss_pred CCCCCCEEEEEecchhhhccCceEEEEeeEEEEeC----CC---------------------------------------
Q 024831 82 LRKAAPIERTLPCSLEDLYKGTTKKMKISRDVIDA----SG--------------------------------------- 118 (262)
Q Consensus 82 ~~~g~di~~~l~itLee~~~G~~k~i~~~r~~~~~----~G--------------------------------------- 118 (262)
+++++|++++|+|||||+|+|+++++++.|.+.|. +|
T Consensus 114 ~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G 193 (373)
T PRK14301 114 PQAGSDLRYNLTVSFRQAAKGDEVTLRIPKNVTCDDCGGSGAAPGTSPETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEG 193 (373)
T ss_pred CCCCCCEEEEEeccHHHHhCCceEEEEeeecccCCCCCCcccCCCCCCcccCCccCeeEEEEEeeeEEEEEeCCCCCcee
Confidence 45789999999999999999999999999988763 11
Q ss_pred ------------C-cccccEEEEEEeCCCCCCCceEEeCccccCCC-CCCCCcEEEEEEeeCCCCeeeeccceEEEEEec
Q 024831 119 ------------R-PNTTEEILTIEIKPGWKKGTKITFPEKGNELR-NVIPSDLIFIIDEKPHSLFKRDGNDLVVTQKIS 184 (262)
Q Consensus 119 ------------~-~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~-~~~~gDlv~~i~~~~h~~f~R~G~DL~~~~~I~ 184 (262)
+ ++.++++++|+||+|+++|++|+|+++|++.+ +..+|||+|+|++++|+.|+|+|+||+++++|+
T Consensus 194 ~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDLiv~i~v~~h~~f~r~G~DL~~~~~Is 273 (373)
T PRK14301 194 RVITHPCPKCKGSGIVQQTRELKVRIPAGVDTGSRLRLRGEGEPGVHGGPPGDLYVVITVEDDKIFQRQGQDLVVTQEIS 273 (373)
T ss_pred eecCCCCCCCCCCceeccceEEEEEeCCCCcCCCEEEEeccccCCCCCCCCcCEEEEEEEEECCCceeecCcEEEEEEec
Confidence 0 24567899999999999999999999999874 567899999999999999999999999999999
Q ss_pred HHHHhCCCEEEEecCCCcEEEEeeCCccCCCcEEEEcCCCCCCCCCCCCCCCEEEEEEEeCCCCCCHHHHHHHHhhC
Q 024831 185 LVEALTGYTVQLTTLDGRTLTVPINSVISPTYEEVIKGEGMPIPKEPSKRGNLRIKFNIKFPSKLTTEQKSGLKRLI 261 (262)
Q Consensus 185 l~~Al~G~~i~i~tldG~~l~v~i~~~~~~g~~~~i~g~GmP~~~~~~~rGDL~V~~~V~~P~~ls~~qk~~l~~~l 261 (262)
|.+||+|++++|+||||+ +.|+||+++++|++++|+|+|||..+ ...+|||||+|+|.||+.|+++|+++|++++
T Consensus 274 l~eAl~G~~~~v~tldG~-i~v~ip~g~~~g~~~ri~g~G~p~~~-~~~~GDL~I~~~V~~P~~l~~~q~~~l~~l~ 348 (373)
T PRK14301 274 FVQAALGDRIEVPTLDDP-VTLDIPKGTQSGEVFRLRGKGLPYLG-SSQKGDLLVEVSVVTPTKLTKRQEELLREFE 348 (373)
T ss_pred HHHHhCCCeEEEecCCcc-EEEEECCCcCCCcEEEEcCCCCCCCC-CCCCCCEEEEEEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999998 99999999999999999999999765 3568999999999999999999999999876
No 27
>PRK14292 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.1e-39 Score=302.61 Aligned_cols=177 Identities=21% Similarity=0.360 Sum_probs=160.2
Q ss_pred CCCCCCEEEEEecchhhhccCceEEEEeeEEEEeC----CCC--------------------------------------
Q 024831 82 LRKAAPIERTLPCSLEDLYKGTTKKMKISRDVIDA----SGR-------------------------------------- 119 (262)
Q Consensus 82 ~~~g~di~~~l~itLee~~~G~~k~i~~~r~~~~~----~G~-------------------------------------- 119 (262)
++++.|+++++.|||+|+|+|++++++++|.+.|. +|.
T Consensus 109 ~~~g~d~~~~l~~sLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~ 188 (371)
T PRK14292 109 PARGDDLETEARITLEQARAGEEVEVEVDRLTECEHCHGSRTEPGGKPPKTCPTCRGAGAVRAQARTIFGVVETQQPCPT 188 (371)
T ss_pred ccCCCCeEEEEeccHHHHcCCeEEEEEEEeeecCCCCcccccCCCCCCCccCCCCCCccEEEEEEeccCceEEEeeecCC
Confidence 35689999999999999999999999999987762 110
Q ss_pred -------------------cccccEEEEEEeCCCCCCCceEEeCccccCCCCCCCCcEEEEEEeeCCCCeeeeccceEEE
Q 024831 120 -------------------PNTTEEILTIEIKPGWKKGTKITFPEKGNELRNVIPSDLIFIIDEKPHSLFKRDGNDLVVT 180 (262)
Q Consensus 120 -------------------~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~gDlv~~i~~~~h~~f~R~G~DL~~~ 180 (262)
++.+.++++|.||+||++|++|+|+|+|++.++.. |||+|+|++++|+.|+|+|+||+++
T Consensus 189 C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~G~G~~~~~~~-GDL~v~i~v~~h~~f~r~g~dL~~~ 267 (371)
T PRK14292 189 CRGEGQIITDPCTVCRGRGRTLKAETVKVKLPRGIDEGYRIRVAGMGNEGPGGN-GDLYVHIEMEPHPELRREQEHLIYE 267 (371)
T ss_pred CcccceecCCCCCCCCCceEEeecceEEEEECCCCCCCcEEEEecCcCCCCCCC-CCEEEEEEEecCCccccchhceeEE
Confidence 22345789999999999999999999999987665 9999999999999999999999999
Q ss_pred EEecHHHHhCCCEEEEecCCCcEEEEeeCCccCCCcEEEEcCCCCCCCCCCCCCCCEEEEEEEeCCCCCCHHHHHHHHhh
Q 024831 181 QKISLVEALTGYTVQLTTLDGRTLTVPINSVISPTYEEVIKGEGMPIPKEPSKRGNLRIKFNIKFPSKLTTEQKSGLKRL 260 (262)
Q Consensus 181 ~~I~l~~Al~G~~i~i~tldG~~l~v~i~~~~~~g~~~~i~g~GmP~~~~~~~rGDL~V~~~V~~P~~ls~~qk~~l~~~ 260 (262)
++|+|.+||+|+++.|+||||+ +.|+||++++++++++|+|+|||..+ ...+|||||+|+|.+|+.|+++|+++|+++
T Consensus 268 ~~isl~eAl~G~~~~i~tldG~-~~v~ip~g~~~g~~~~i~g~G~p~~~-~~~~GDL~V~~~v~~P~~l~~~q~~ll~~~ 345 (371)
T PRK14292 268 ARIGFAKAALGGQITVPTLDGP-QVIEVKPGTQHGDLHRLRGQGMPRLQ-GAGTGDLIVEYEIAVPKQLSPEAREALEAY 345 (371)
T ss_pred eccCHHHHhCCCeEEEECCCCC-EEEecCCCcCCCcEEEECCCCCCCCC-CCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 9999999999999999999998 58999999999999999999999765 346799999999999999999999999998
Q ss_pred C
Q 024831 261 I 261 (262)
Q Consensus 261 l 261 (262)
+
T Consensus 346 ~ 346 (371)
T PRK14292 346 A 346 (371)
T ss_pred H
Confidence 6
No 28
>PRK14300 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.7e-39 Score=303.26 Aligned_cols=178 Identities=24% Similarity=0.404 Sum_probs=163.4
Q ss_pred CCCCCEEEEEecchhhhccCceEEEEeeEEEEeC----CCC---------------------------------------
Q 024831 83 RKAAPIERTLPCSLEDLYKGTTKKMKISRDVIDA----SGR--------------------------------------- 119 (262)
Q Consensus 83 ~~g~di~~~l~itLee~~~G~~k~i~~~r~~~~~----~G~--------------------------------------- 119 (262)
++++|++++|.|||+|+|+|++++|++.|.+.|. +|.
T Consensus 116 ~~g~di~~~l~~sLee~~~G~~k~i~~~r~~~C~~C~G~g~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~ 195 (372)
T PRK14300 116 VRGSDLKYNLTINLEEAFHGIEKNISFSSEVKCDTCHGSGSEKGETVTTCDACSGVGATRMQQGFFTIEQACHKCQGNGQ 195 (372)
T ss_pred CCCCCeeEEEEEEHHHHhCCceEEEEeeeccccCCCCCcccCCCCCCccCCCccCeEEEEEeeceEEEEEeCCCCCccce
Confidence 5688999999999999999999999999988773 110
Q ss_pred -------------cccccEEEEEEeCCCCCCCceEEeCccccCC-CCCCCCcEEEEEEeeCCCCeeeeccceEEEEEecH
Q 024831 120 -------------PNTTEEILTIEIKPGWKKGTKITFPEKGNEL-RNVIPSDLIFIIDEKPHSLFKRDGNDLVVTQKISL 185 (262)
Q Consensus 120 -------------~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~-~~~~~gDlv~~i~~~~h~~f~R~G~DL~~~~~I~l 185 (262)
++.+.++++|.||+|+++|++|+|+++|++. ++..+|||+|+|++++|+.|+|+|+||+++++|+|
T Consensus 196 ~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~h~~f~R~G~Dl~~~~~Isl 275 (372)
T PRK14300 196 IIKNPCKKCHGMGRYHKQRNLSVNIPAGVENGTRIRHTGEGEAGIRGGNSGDLYVDIAIKPHDIYKVDGANLHCKLPISF 275 (372)
T ss_pred EeCCCCCCCCCceEEEeeEEEEEEECCCCCCCcEEEEeccccCCCCCCCCCCEEEEEEECCCCCeEEecCCEEEEEecCH
Confidence 2446688999999999999999999999987 56778999999999999999999999999999999
Q ss_pred HHHhCCCEEEEecCCCcEEEEeeCCccCCCcEEEEcCCCCCCCCCCCCCCCEEEEEEEeCCCCCCHHHHHHHHhhC
Q 024831 186 VEALTGYTVQLTTLDGRTLTVPINSVISPTYEEVIKGEGMPIPKEPSKRGNLRIKFNIKFPSKLTTEQKSGLKRLI 261 (262)
Q Consensus 186 ~~Al~G~~i~i~tldG~~l~v~i~~~~~~g~~~~i~g~GmP~~~~~~~rGDL~V~~~V~~P~~ls~~qk~~l~~~l 261 (262)
.+||+|+++.|+||||+.+.|+||+++++|++++|+|+|||..+ ...+|||||+|+|.||++||++||++|++++
T Consensus 276 ~~Al~G~~~~i~~ldg~~i~v~Ip~g~~~g~~iri~g~G~p~~~-~~~~GDL~V~~~v~~P~~ls~~qk~~l~~l~ 350 (372)
T PRK14300 276 VNAALGGEIEVPVIEGGKVNLTIPAGTQNGDQLRLRSKGMSKMR-STIRGDMLTHIHVEVPKNLSKRQRELLEEFK 350 (372)
T ss_pred HHHhCCCEEEEecCCCCEEEEEECCccCCCcEEEECCCCCCCCC-CCCCCCEEEEEEEECCCCCCHHHHHHHHHHH
Confidence 99999999999999998899999999999999999999999754 3468999999999999999999999999986
No 29
>PRK14283 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.7e-38 Score=297.10 Aligned_cols=178 Identities=28% Similarity=0.445 Sum_probs=162.1
Q ss_pred CCCCCCEEEEEecchhhhccCceEEEEeeEEEEeC----CC-----------------C---------------------
Q 024831 82 LRKAAPIERTLPCSLEDLYKGTTKKMKISRDVIDA----SG-----------------R--------------------- 119 (262)
Q Consensus 82 ~~~g~di~~~l~itLee~~~G~~k~i~~~r~~~~~----~G-----------------~--------------------- 119 (262)
++++.|++++|+|||+|+|+|++++++++|.+.|. +| .
T Consensus 116 ~~kg~di~~~l~vsLed~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C 195 (378)
T PRK14283 116 PQRGADIYTEVEITLEEAASGVEKDIKVRHTKKCPVCNGSRAEPGSEVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDC 195 (378)
T ss_pred ccCCCCeEEEeeeeHHHHhCCcceEEEeeeeccCCCCCccccCCCCCCccCCCcCCccEEEEEEeccCceEEEEEECCCC
Confidence 45789999999999999999999999999988763 11 0
Q ss_pred ------------------cccccEEEEEEeCCCCCCCceEEeCccccCCC-CCCCCcEEEEEEeeCCCCeeeeccceEEE
Q 024831 120 ------------------PNTTEEILTIEIKPGWKKGTKITFPEKGNELR-NVIPSDLIFIIDEKPHSLFKRDGNDLVVT 180 (262)
Q Consensus 120 ------------------~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~-~~~~gDlv~~i~~~~h~~f~R~G~DL~~~ 180 (262)
++.+.++++|.||+|+++|++|+|+++|++.+ +..+|||+|+|++++|+.|+|+|+||+++
T Consensus 196 ~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IppG~~~G~~i~l~g~G~~~~~~~~~GDLiv~i~v~~~~~f~r~G~DL~~~ 275 (378)
T PRK14283 196 QGEGKIVEKPCSNCHGKGVVRETKTISVKIPAGVETGSRLRVSGEGEMGDRGGEPGDLYVVIKVKPHKIFRREGANLYYE 275 (378)
T ss_pred CccceecCCCCCCCCCceeeccceeEEEEECCCCCCCcEEEEeccccCCCCCCCCccEEEEEEEEcCCCEEEecCCEEEE
Confidence 23456889999999999999999999999874 56789999999999999999999999999
Q ss_pred EEecHHHHhCCCEEEEecCCCcEEEEeeCCccCCCcEEEEcCCCCCCCCCCCCCCCEEEEEEEeCCCCCCHHHHHHHHhh
Q 024831 181 QKISLVEALTGYTVQLTTLDGRTLTVPINSVISPTYEEVIKGEGMPIPKEPSKRGNLRIKFNIKFPSKLTTEQKSGLKRL 260 (262)
Q Consensus 181 ~~I~l~~Al~G~~i~i~tldG~~l~v~i~~~~~~g~~~~i~g~GmP~~~~~~~rGDL~V~~~V~~P~~ls~~qk~~l~~~ 260 (262)
+.|+|.+||+|++++|+|||| .+.|+||+++++|++++|+|+|||... ...+|||||+|+|.||+.|+++|+++|+++
T Consensus 276 ~~Isl~eAl~G~~~~i~tldG-~i~v~ip~g~~~g~~~ri~g~G~p~~~-~~~~GdL~v~~~v~~P~~l~~~q~~ll~~~ 353 (378)
T PRK14283 276 KPISFVQAALGDTVDVPTIDG-PVELKIPAGTQSGTTFRLKGHGMPSLR-WSGKGNLYVKVKVVVPKKLSPKQKELLREF 353 (378)
T ss_pred EecCHHHHhcCCeEEEEcCCc-eEEEEeCCCCCCCCEEEECCCCCCCCC-CCCCCCEEEEEEEEeCCCCCHHHHHHHHHH
Confidence 999999999999999999999 599999999999999999999999755 347899999999999999999999999998
Q ss_pred C
Q 024831 261 I 261 (262)
Q Consensus 261 l 261 (262)
+
T Consensus 354 ~ 354 (378)
T PRK14283 354 A 354 (378)
T ss_pred H
Confidence 6
No 30
>PRK14293 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.6e-38 Score=296.83 Aligned_cols=179 Identities=25% Similarity=0.416 Sum_probs=162.5
Q ss_pred CCCCCCEEEEEecchhhhccCceEEEEeeEEEEeC----CC-----------------C---------------------
Q 024831 82 LRKAAPIERTLPCSLEDLYKGTTKKMKISRDVIDA----SG-----------------R--------------------- 119 (262)
Q Consensus 82 ~~~g~di~~~l~itLee~~~G~~k~i~~~r~~~~~----~G-----------------~--------------------- 119 (262)
+++++|++++|+|||||+|+|++++++++|.+.|. +| .
T Consensus 113 ~~kg~di~~~l~vsLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C 192 (374)
T PRK14293 113 PQRGDDLRYDLKLDFREAIFGGEKEIRIPHLETCETCRGSGAKPGTGPTTCSTCGGAGQVRRATRTPFGSFTQVSECPTC 192 (374)
T ss_pred ccCCCCeEEEEEeeHHHHhCCceEEEEeeccccCCCCCCcCCCCCCCCeeCCCCCCcceEEEEEecCcceEEEEeeCCCC
Confidence 45789999999999999999999999999987762 11 0
Q ss_pred ------------------cccccEEEEEEeCCCCCCCceEEeCccccCC-CCCCCCcEEEEEEeeCCCCeeeeccceEEE
Q 024831 120 ------------------PNTTEEILTIEIKPGWKKGTKITFPEKGNEL-RNVIPSDLIFIIDEKPHSLFKRDGNDLVVT 180 (262)
Q Consensus 120 ------------------~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~-~~~~~gDlv~~i~~~~h~~f~R~G~DL~~~ 180 (262)
++.++++++|+|||||++|++|+++++|++. ++..+|||+|+|++++|+.|+|+++||+++
T Consensus 193 ~G~G~~~~~~C~~C~G~g~v~~~~~~~V~IppG~~~G~~i~l~g~G~~~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~ 272 (374)
T PRK14293 193 NGTGQVIEDPCDACGGQGVKQVTKKLKINIPAGVDTGTRLRVSGEGDAGLRGGPPGDLYVYLFVKNDPEFRRDGINILSE 272 (374)
T ss_pred CcceeEeccCCCCCCCCcccccceEEEEEeCCCCCCCCEEEEccCccCCCCCCCCcCEEEEEEEeCCCccChhhhceEEE
Confidence 2345678899999999999999999999986 356689999999999999999999999999
Q ss_pred EEecHHHHhCCCEEEEecCCCcEEEEeeCCccCCCcEEEEcCCCCCCCCCCCCCCCEEEEEEEeCCCCCCHHHHHHHHhh
Q 024831 181 QKISLVEALTGYTVQLTTLDGRTLTVPINSVISPTYEEVIKGEGMPIPKEPSKRGNLRIKFNIKFPSKLTTEQKSGLKRL 260 (262)
Q Consensus 181 ~~I~l~~Al~G~~i~i~tldG~~l~v~i~~~~~~g~~~~i~g~GmP~~~~~~~rGDL~V~~~V~~P~~ls~~qk~~l~~~ 260 (262)
++|+|.+||+|+++.|+||||+ +.|+||+++++|++++|+|+|||..++.+.+|||||+|+|+||+.|+++|+++|+++
T Consensus 273 ~~Isl~eAl~G~~~~i~~ldG~-~~i~ip~~~~~g~~~ri~g~G~p~~~~~~~~GDL~v~~~v~~P~~l~~~~~~l~~~l 351 (374)
T PRK14293 273 IKISYLQAILGDTLEVDTVDGP-VELTIPAGTQPNTVLTLENKGVPRLGNPVARGDHLITVKVKIPTRISDEERELLEKL 351 (374)
T ss_pred eccCHHHHhCCCEEEecCCCCC-EEEEeCCCCCCCCEEEECCCCCCCCCCCCCcCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 9999999999999999999997 899999999999999999999997664457899999999999999999999999998
Q ss_pred C
Q 024831 261 I 261 (262)
Q Consensus 261 l 261 (262)
|
T Consensus 352 ~ 352 (374)
T PRK14293 352 A 352 (374)
T ss_pred H
Confidence 7
No 31
>PRK14289 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.1e-37 Score=292.48 Aligned_cols=178 Identities=26% Similarity=0.447 Sum_probs=162.5
Q ss_pred CCCCCCEEEEEecchhhhccCceEEEEeeEEEEeC----CCC--------------------------------------
Q 024831 82 LRKAAPIERTLPCSLEDLYKGTTKKMKISRDVIDA----SGR-------------------------------------- 119 (262)
Q Consensus 82 ~~~g~di~~~l~itLee~~~G~~k~i~~~r~~~~~----~G~-------------------------------------- 119 (262)
+.+++|+++.|.|||||+|+||+++|+++|.+.|. +|.
T Consensus 124 ~~~g~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C 203 (386)
T PRK14289 124 VFRGSDLRVKVKLNLKEISTGVEKKFKVKKYVPCSHCHGTGAEGNNGSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTC 203 (386)
T ss_pred CCCCCCeEEEEEEEHHHhhCCeEEEEEEEeecccCCCCCCCCCCCCCCCcCCCCcCeEEEEEEEecccceEEEEEecCCC
Confidence 45789999999999999999999999999998772 110
Q ss_pred ------------------cccccEEEEEEeCCCCCCCceEEeCccccCC-CCCCCCcEEEEEEeeCCCCeeeeccceEEE
Q 024831 120 ------------------PNTTEEILTIEIKPGWKKGTKITFPEKGNEL-RNVIPSDLIFIIDEKPHSLFKRDGNDLVVT 180 (262)
Q Consensus 120 ------------------~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~-~~~~~gDlv~~i~~~~h~~f~R~G~DL~~~ 180 (262)
++.++++++|.||+||++|++|+++++|++. .+..+|||+|+|++++|+.|+|+++||+++
T Consensus 204 ~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~ 283 (386)
T PRK14289 204 NGEGKIIKKKCKKCGGEGIVYGEEVITVKIPAGVAEGMQLSMNGKGNAGKHGGVNGDLLVVIEEEPHPELIRDENDLIYN 283 (386)
T ss_pred CccccccCcCCCCCCCCcEEeeeEEEEEEeCCCCCCCCEEEEeccccCCCCCCCCccEEEEEEEecCCcccccccceeEE
Confidence 2345678999999999999999999999987 466789999999999999999999999999
Q ss_pred EEecHHHHhCCCEEEEecCCCcEEEEeeCCccCCCcEEEEcCCCCCCCCCCCCCCCEEEEEEEeCCCCCCHHHHHHHHhh
Q 024831 181 QKISLVEALTGYTVQLTTLDGRTLTVPINSVISPTYEEVIKGEGMPIPKEPSKRGNLRIKFNIKFPSKLTTEQKSGLKRL 260 (262)
Q Consensus 181 ~~I~l~~Al~G~~i~i~tldG~~l~v~i~~~~~~g~~~~i~g~GmP~~~~~~~rGDL~V~~~V~~P~~ls~~qk~~l~~~ 260 (262)
+.|+|.+||+|+++.|+|+||+ +.|+||+++++|++++|+|+|||..+ ...+|||||+|+|.||+.|+++||++|+++
T Consensus 284 ~~Isl~eAl~G~~~~i~~ldg~-i~v~ip~g~~~g~~~ri~g~G~p~~~-~~~~GDL~v~~~v~~P~~l~~~q~~~l~~l 361 (386)
T PRK14289 284 LLLSVPTAALGGAVEVPTIDGK-AKVKIEAGTQPGKVLRLRNKGLPSVN-GYGTGDLLVNVSVYIPETLSKEEKQTLEKM 361 (386)
T ss_pred eccCHHHHhCCCeEEeecCCce-EEEEECCccCCCcEEEECCCCcCCCC-CCCCCcEEEEEEEEeCCCCCHHHHHHHHHH
Confidence 9999999999999999999997 89999999999999999999999755 347899999999999999999999999998
Q ss_pred C
Q 024831 261 I 261 (262)
Q Consensus 261 l 261 (262)
+
T Consensus 362 ~ 362 (386)
T PRK14289 362 E 362 (386)
T ss_pred H
Confidence 6
No 32
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=100.00 E-value=2.8e-36 Score=293.32 Aligned_cols=159 Identities=15% Similarity=0.205 Sum_probs=146.0
Q ss_pred CCCEEEEEecchhhhccCceEEEEeeEEEEeCCCC-cccccEEEEEEeCCCCCCCceEEeCccccCCCCCCCCcEEEEEE
Q 024831 85 AAPIERTLPCSLEDLYKGTTKKMKISRDVIDASGR-PNTTEEILTIEIKPGWKKGTKITFPEKGNELRNVIPSDLIFIID 163 (262)
Q Consensus 85 g~di~~~l~itLee~~~G~~k~i~~~r~~~~~~G~-~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~gDlv~~i~ 163 (262)
.-+|++.++|||+++|+||+|+|++.|.+.|+.|. ++.+.++++|+||+||++|++|+|+|+|++.++.. |||+|+|+
T Consensus 656 ~~dI~y~l~vtLEeLY~G~tKkIKitR~V~~g~G~ktvkE~ktLeVkIPpGVkdGqkIRf~GeGDegpgg~-GDLyVvIk 734 (871)
T TIGR03835 656 NVNLVYEEEVPQILFFNNQIKEIKYTRHTVDGNTESTTNEAITLEIQLPITSQLNISAIFKGFGHDFGNGC-GDLKVVFK 734 (871)
T ss_pred ccceEEecccCHHHHhCCCeEEEEEEEeeccCCCcceeeeeEEEEEecCCCCCCCCEEEeccccCCCCCCC-CCEEEEEE
Confidence 45899999999999999999999999999988773 45667899999999999999999999999876654 99999999
Q ss_pred eeCCCCeeeeccceEEEEEecHHHHhCCCEEEEecCCCcEEEEeeCCccCCCcEEEEcCCCCCCCCCCCCCCCEEEEEEE
Q 024831 164 EKPHSLFKRDGNDLVVTQKISLVEALTGYTVQLTTLDGRTLTVPINSVISPTYEEVIKGEGMPIPKEPSKRGNLRIKFNI 243 (262)
Q Consensus 164 ~~~h~~f~R~G~DL~~~~~I~l~~Al~G~~i~i~tldG~~l~v~i~~~~~~g~~~~i~g~GmP~~~~~~~rGDL~V~~~V 243 (262)
+++|+.|+|+|+||+++++|+|.+||+|+++.|+||||+ +.|+||+++++|+++||+|+|||.. ++.||||||+|+|
T Consensus 735 VKPHp~FrRdGdDL~~~v~ISL~EALLGgtIeIpTLDGr-VkLkIPpgTqpGqvLRIkGKGMP~~--~~~RGDLyV~f~V 811 (871)
T TIGR03835 735 VIPSNFFQIKNDGLHVAALVDPLVAYNGGIIDVFGPNKL-FNVRIPGGIKVNDQVIFKDLGLTKT--KYDKGSLIVHLYY 811 (871)
T ss_pred EcCCCCeEEECCeEEEEEecCHHHHhcCCEEEeeCCCCC-EEEeeCCCCCCCcEEEECCCCCCCC--CCCCCCEEEEEEE
Confidence 999999999999999999999999999999999999998 9999999999999999999999943 3578999999998
Q ss_pred e-CCC
Q 024831 244 K-FPS 247 (262)
Q Consensus 244 ~-~P~ 247 (262)
. +++
T Consensus 812 ~~~~k 816 (871)
T TIGR03835 812 SSVMK 816 (871)
T ss_pred eeccc
Confidence 7 443
No 33
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.9e-36 Score=270.12 Aligned_cols=175 Identities=41% Similarity=0.684 Sum_probs=164.1
Q ss_pred CCCCEEEEEecchhhhccCceEEEEeeEEEEeC----CC-----------------------------------------
Q 024831 84 KAAPIERTLPCSLEDLYKGTTKKMKISRDVIDA----SG----------------------------------------- 118 (262)
Q Consensus 84 ~g~di~~~l~itLee~~~G~~k~i~~~r~~~~~----~G----------------------------------------- 118 (262)
+++|+.+.|+|||||+|.|.++++.++++.+|. +|
T Consensus 99 rg~~~~~~~~~~Le~~y~G~s~kl~l~~~~iCs~C~GsGgksg~~~~C~~C~GsGv~~~~~~~gPg~~qs~q~~C~~C~G 178 (337)
T KOG0712|consen 99 RGKDVVHQLKVTLEELYMGKSKKLFLSRNFICSKCSGSGGKSGSAPKCTTCRGSGVQTRTRQMGPGMVQSPQLVCDSCNG 178 (337)
T ss_pred cCCCceEEEEEEHHHhhcCCccceecccCccCCcCCCCCCCCCCCCCCCCCCCCCceeEEEeccccccccceeEeccCCC
Confidence 399999999999999999999999999999983 10
Q ss_pred --C---------------cccccEEEEEEeCCCCCCCceEEeCccccCCCCCCCCcEEEEEEeeCCCCeeeeccceEEEE
Q 024831 119 --R---------------PNTTEEILTIEIKPGWKKGTKITFPEKGNELRNVIPSDLIFIIDEKPHSLFKRDGNDLVVTQ 181 (262)
Q Consensus 119 --~---------------~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~gDlv~~i~~~~h~~f~R~G~DL~~~~ 181 (262)
. ++.+.+.++|+|++|++++++|++.+++++.++..++|++|.|..++|+.|.|+++||++..
T Consensus 179 ~G~~~~~kd~C~~C~G~~~v~~kkil~v~V~~g~~~~~ki~f~geadea~g~~pgD~vl~i~~k~h~~F~Rrg~dL~~~~ 258 (337)
T KOG0712|consen 179 SGETISLKDRCKTCSGAKVVREKKILEVHVEPGMPHGQKITFKGEADEAPGTKPGDVVLLIDQKEHPGFDRRGSDLYRKL 258 (337)
T ss_pred ccccccccccCcccccchhhhhhheeeccccCCCcccceeeeeeeeeecCCCcCccEEEEecccccccceecccccceee
Confidence 0 46778899999999999999999999999999988999999999999999999999999999
Q ss_pred EecHHHHhCCCEEEEecCCCcEEEEeeCC--ccCCCcEEEEcCCCCCCCCCCCCCCCEEEEEEEeCCCCCCHHHHHHHHh
Q 024831 182 KISLVEALTGYTVQLTTLDGRTLTVPINS--VISPTYEEVIKGEGMPIPKEPSKRGNLRIKFNIKFPSKLTTEQKSGLKR 259 (262)
Q Consensus 182 ~I~l~~Al~G~~i~i~tldG~~l~v~i~~--~~~~g~~~~i~g~GmP~~~~~~~rGDL~V~~~V~~P~~ls~~qk~~l~~ 259 (262)
+|+|.+||||+.+.+.||||+.|.|.+++ +++|+++++|+|+|||+.+++ +|||||+|+|+||+ |++++...|++
T Consensus 259 ~i~l~eal~G~~~~~~~ldGr~l~~~~~pg~vi~~~~~~~v~~~gmp~~~~~--~g~lyi~~~v~fp~-~~~~~~~~l~~ 335 (337)
T KOG0712|consen 259 TISLVEALCGFQRVWETLDGRLLKLSSKPGEVISPGDTKRVEGEGMPIFRNP--KGDLYIKFEVKFPK-LSPSQLKMLED 335 (337)
T ss_pred ecchhhccccceEEEEccCCceEEEecCCCceeChhHEEeecCCCcccccCC--CCcEEEEEEEEcCC-CChHHHHHHHh
Confidence 99999999999999999999999998865 999999999999999999877 99999999999999 99999999998
Q ss_pred hC
Q 024831 260 LI 261 (262)
Q Consensus 260 ~l 261 (262)
+|
T Consensus 336 ~l 337 (337)
T KOG0712|consen 336 LL 337 (337)
T ss_pred hC
Confidence 86
No 34
>PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolizing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. Thus, DnaK and DnaJ may bind to one and the same polypeptide chain to form a ternary complex. The formation of a ternary complex may result in cis-interaction of the J-domain of DnaJ with the ATPase domain of DnaK. An unfolded polypeptide may enter the chaperone cycle by associating first either with ATP-liganded DnaK or with DnaJ. DnaK interacts with both the backbone and side chains of a peptide substrate; it thus shows binding polarity and admits only L-peptide segments. In contrast, DnaJ has been shown to bind both L- and D-peptides and is assumed to interact only with the side chains of the substrate. This domain consists of the C-terminal region of the DnaJ protein. The function of this domain is unknown. It is found associated with IPR001623 from INTERPRO and IPR001305 from INTERPRO. ; GO: 0051082 unfolded protein binding, 0006457 protein folding; PDB: 2Q2G_A 2QLD_A 3AGX_A 3AGZ_A 3AGY_A 3I38_J 3LZ8_B 2B26_B 1C3G_A 1XAO_B ....
Probab=99.90 E-value=4.5e-24 Score=158.15 Aligned_cols=81 Identities=48% Similarity=0.707 Sum_probs=71.1
Q ss_pred ceEEEEEecHHHHhCCCEEEEecCCCcEEEEeeCCccCCCcEEEEcCCCCCCCCCCCCCCCEEEEEEEeCCCCCCHHHHH
Q 024831 176 DLVVTQKISLVEALTGYTVQLTTLDGRTLTVPINSVISPTYEEVIKGEGMPIPKEPSKRGNLRIKFNIKFPSKLTTEQKS 255 (262)
Q Consensus 176 DL~~~~~I~l~~Al~G~~i~i~tldG~~l~v~i~~~~~~g~~~~i~g~GmP~~~~~~~rGDL~V~~~V~~P~~ls~~qk~ 255 (262)
||+++++|+|++|++|++++|+|+||+.++|++|+++++|++++|+|+|||..++++.+|||||+|+|.||++||++||+
T Consensus 1 DL~~~~~I~l~~al~G~~i~i~~l~g~~~~i~ip~~~~~g~~~~i~g~G~p~~~~~~~~GdL~v~~~V~~P~~ls~~qk~ 80 (81)
T PF01556_consen 1 DLYCTIPISLKEALLGGTISIPTLDGKTIKIKIPPGTQPGQQLRIKGKGMPKPKGGGKRGDLIVKFEVEFPKKLSPEQKE 80 (81)
T ss_dssp EEEEEEEEEHHHHHH-EEEEEE-TTS-EEEEEETST-STT-EEEETTESEEESSSTTSBEEEEEEEEEE--SSTSHHHHH
T ss_pred CeEEEEEeCHHHHhCCCEEEEECCCCCEEEEeccCccCCCcEEeecCCCCCcCCCCCCcCCEEEEEEEECCCCCCHHHhc
Confidence 89999999999999999999999999999999999999999999999999988876789999999999999999999998
Q ss_pred H
Q 024831 256 G 256 (262)
Q Consensus 256 ~ 256 (262)
+
T Consensus 81 l 81 (81)
T PF01556_consen 81 L 81 (81)
T ss_dssp H
T ss_pred C
Confidence 5
No 35
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=7.9e-12 Score=111.31 Aligned_cols=144 Identities=55% Similarity=0.938 Sum_probs=129.6
Q ss_pred CCCCEEEEEecchhhhccCceEEEEeeEEEEeCCCCc-ccccEEEEEEeCCCCCCCceEEeCccccCCCCCCCCcEEEEE
Q 024831 84 KAAPIERTLPCSLEDLYKGTTKKMKISRDVIDASGRP-NTTEEILTIEIKPGWKKGTKITFPEKGNELRNVIPSDLIFII 162 (262)
Q Consensus 84 ~g~di~~~l~itLee~~~G~~k~i~~~r~~~~~~G~~-~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~gDlv~~i 162 (262)
+...+...+.+++++++.++.++..+.+......++. ....+.+.+.+.++|+.++.+++..+|+..++..+.++++++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~f~~ 237 (306)
T KOG0714|consen 158 QSPPVEHPLRVSLEDLYKGESKKMKISRQSFTSNGREGSSRSRYLSISIKPGWKEGTKITFPEEGDEEPGILPADIEFVV 237 (306)
T ss_pred CCCCccCCcceeHHHhccccceeeecccccccCCcccccCccceeEEeccCCcccccceeccccccccCCcCcceeEEEE
Confidence 3444777788899999999999999998876655543 456778999999999999999999999988877889999999
Q ss_pred EeeCCCCeeeeccceEEE--EEecHHHHhCCCEEEEecCCCcEEEEeeC-CccCCCcEEEEcCCCCCC
Q 024831 163 DEKPHSLFKRDGNDLVVT--QKISLVEALTGYTVQLTTLDGRTLTVPIN-SVISPTYEEVIKGEGMPI 227 (262)
Q Consensus 163 ~~~~h~~f~R~G~DL~~~--~~I~l~~Al~G~~i~i~tldG~~l~v~i~-~~~~~g~~~~i~g~GmP~ 227 (262)
.+++|..|.|.++||.+. ..|++.+|+++....+++++++.+.+.+. ..+.+++..++++++||+
T Consensus 238 ~~~~~~~~~~~~~~l~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (306)
T KOG0714|consen 238 DEKPHPLFSRDGNDLSYSSGYEISLKEALLGVTVFVPTLDGRSYSLSINKDLIEPGEEDVIPGEGLPC 305 (306)
T ss_pred ecCCcccccCCCccceecccceeehhhhhcCcceeeecccCccccCcccccccCCCceeeecCCCCCC
Confidence 999999999999999999 99999999999999999999998888888 899999999999999986
No 36
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=1.4e-13 Score=124.47 Aligned_cols=170 Identities=31% Similarity=0.517 Sum_probs=146.7
Q ss_pred CCCCCCEEEEEecchhhhccCceEEEEeeEEEEe-------------------CCCC----------------cccccEE
Q 024831 82 LRKAAPIERTLPCSLEDLYKGTTKKMKISRDVID-------------------ASGR----------------PNTTEEI 126 (262)
Q Consensus 82 ~~~g~di~~~l~itLee~~~G~~k~i~~~r~~~~-------------------~~G~----------------~~~~~~~ 126 (262)
..++.++...++.++++.|.+...+..-.+.+.+ +.|. ...++.+
T Consensus 123 ~~~g~~V~~~~e~~~~h~y~~~~~e~~r~~~v~~~~~g~~~~~~~~~~~~~~~~~g~~~~~q~~~~~~~~~~k~~~e~~~ 202 (336)
T KOG0713|consen 123 LPKGSDVSSDLEKQLEHFYMGNFVEEVREKGVYKPAPGTRKCNCRLEMFTQQEGPGRFQMLQEAVCDECPNVKLVLEEDP 202 (336)
T ss_pred CCCCceEEeehhhchhhhhcccHHHHHhccCceeecCcccccCChhhheeeccCCChhhhhhhhhhccCCccceeecCCc
Confidence 5678999999999999999986544433333221 0121 3566788
Q ss_pred EEEEeCCCCCCCceEEeCccccCCCCCCCCcEEEEEEeeCCCCeeeeccceEEEEEecHHHHhCCCEEEEecCCCcEEEE
Q 024831 127 LTIEIKPGWKKGTKITFPEKGNELRNVIPSDLIFIIDEKPHSLFKRDGNDLVVTQKISLVEALTGYTVQLTTLDGRTLTV 206 (262)
Q Consensus 127 l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~gDlv~~i~~~~h~~f~R~G~DL~~~~~I~l~~Al~G~~i~i~tldG~~l~v 206 (262)
+++.+..+...+....+..++.+...+.++|++|.+..-+|+.|.|+++||++.+.+++.+++.+...++.++|+..+.+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~h~~~~~gD~~f~~~~y~~~~~~~k~~~~~~n~~~sl~~~~v~~~~e~~~~d~~~~~~ 282 (336)
T KOG0713|consen 203 LEVEFERGDADGPEEIFELEGEPHIDGVPGDLFFKIVSYTHPRFERKGDDLYTNVTISLEAALVGFEMEILHLDGHYVEV 282 (336)
T ss_pred eeeeeeecccCCceeeeeccCCcceecccCCceeeeEEecccceecCccchhhHHHHHHHHHHHHHHHHhhccchhhhhh
Confidence 99999999999999999999988777889999999999999999999999999999999999999999999999998888
Q ss_pred eeCCccCCCcEEEEcCCCCCCCCCCCCCCCEEEEEEEeCCC-CCCH
Q 024831 207 PINSVISPTYEEVIKGEGMPIPKEPSKRGNLRIKFNIKFPS-KLTT 251 (262)
Q Consensus 207 ~i~~~~~~g~~~~i~g~GmP~~~~~~~rGDL~V~~~V~~P~-~ls~ 251 (262)
..-.+..|+..++..++|||..++....+++++.|.+.+|. .++.
T Consensus 283 ~r~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~t~~~~~~~~~~~~ 328 (336)
T KOG0713|consen 283 SRKKITWPGARTRKKGEGMPLLKNRNEKGNLYVTFDVEFPKSSLSD 328 (336)
T ss_pred hhhhccccchhhhhhhccchhhhccchhcceeEEecccCcccccch
Confidence 88889999999999999999888888999999999999995 4665
No 37
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.15 E-value=9.1e-11 Score=109.90 Aligned_cols=87 Identities=18% Similarity=0.197 Sum_probs=76.5
Q ss_pred CCCCCCEEEEEecchhhhccCceEEEEeeEEEEeCCCCcccccEEEEEEeCCCCCCCceEEeCccccCCC-CCCCCcEEE
Q 024831 82 LRKAAPIERTLPCSLEDLYKGTTKKMKISRDVIDASGRPNTTEEILTIEIKPGWKKGTKITFPEKGNELR-NVIPSDLIF 160 (262)
Q Consensus 82 ~~~g~di~~~l~itLee~~~G~~k~i~~~r~~~~~~G~~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~-~~~~gDlv~ 160 (262)
.+++.||+++++|||+||+.|++++|... +| ++++|+||+|+++|++|+++|+|++.. +..+|||+|
T Consensus 272 ~r~G~DL~~~~~Isl~eAl~G~~~~i~~l------dG------~~i~v~Ip~g~~~g~~iri~GkG~p~~~~~~~GDL~V 339 (369)
T PRK14282 272 KRSGSDLIYDVTIDYLQAILGTTVEVPLP------EG------GTTMLKIPPGTQPETVFRLKGKGLPNMRYGRRGDLIV 339 (369)
T ss_pred EEecCCEEEEEEeCHHHHhCCCEEEEeCC------CC------cEEEEEeCCCcCCCCEEEECCCCCCCCCCCCCCCEEE
Confidence 36689999999999999999999998764 55 378999999999999999999999864 346799999
Q ss_pred EEEeeCCCCeeeeccceEEE
Q 024831 161 IIDEKPHSLFKRDGNDLVVT 180 (262)
Q Consensus 161 ~i~~~~h~~f~R~G~DL~~~ 180 (262)
+|+++.|+.|++++.+|+.+
T Consensus 340 ~~~v~~P~~l~~~~~~ll~~ 359 (369)
T PRK14282 340 NVHVEIPKRLSREERKLLKE 359 (369)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 99999999999999887643
No 38
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.03 E-value=4.9e-10 Score=104.84 Aligned_cols=85 Identities=14% Similarity=0.146 Sum_probs=75.5
Q ss_pred CCCCCEEEEEecchhhhccCceEEEEeeEEEEeCCCCcccccEEEEEEeCCCCCCCceEEeCccccCCCC-CCCCcEEEE
Q 024831 83 RKAAPIERTLPCSLEDLYKGTTKKMKISRDVIDASGRPNTTEEILTIEIKPGWKKGTKITFPEKGNELRN-VIPSDLIFI 161 (262)
Q Consensus 83 ~~g~di~~~l~itLee~~~G~~k~i~~~r~~~~~~G~~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~-~~~gDlv~~ 161 (262)
+++.||+++++|||.||+.|++++|... +| +++|+||+|+++|++|+++++|.+.++ ..+|||+|+
T Consensus 267 R~G~DL~~~~~Isl~eAl~G~~~~I~~~------~g-------~i~V~Ip~g~~~g~~iri~g~G~p~~~~~~~GDL~V~ 333 (365)
T PRK14290 267 RINDDLYVDQKINFPQAALGGEIEIKLF------RE-------KYNLKIPEGTQPGEVLKIKGAGMPHLNGHGSGDLLVR 333 (365)
T ss_pred EecCCEEEEEEeCHHHHhCCCEEEEEcC------Cc-------eEEEEECCccCCCcEEEECCCCCCCCCCCCCCCEEEE
Confidence 5688999999999999999999998754 33 699999999999999999999998754 358999999
Q ss_pred EEeeCCCCeeeeccceEEE
Q 024831 162 IDEKPHSLFKRDGNDLVVT 180 (262)
Q Consensus 162 i~~~~h~~f~R~G~DL~~~ 180 (262)
|++..++.|++++.+|+.+
T Consensus 334 ~~V~~P~~l~~~~~~ll~~ 352 (365)
T PRK14290 334 INVEVPKRLTSKQKELIRE 352 (365)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 9999999999999888765
No 39
>PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolizing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. Thus, DnaK and DnaJ may bind to one and the same polypeptide chain to form a ternary complex. The formation of a ternary complex may result in cis-interaction of the J-domain of DnaJ with the ATPase domain of DnaK. An unfolded polypeptide may enter the chaperone cycle by associating first either with ATP-liganded DnaK or with DnaJ. DnaK interacts with both the backbone and side chains of a peptide substrate; it thus shows binding polarity and admits only L-peptide segments. In contrast, DnaJ has been shown to bind both L- and D-peptides and is assumed to interact only with the side chains of the substrate. This domain consists of the C-terminal region of the DnaJ protein. The function of this domain is unknown. It is found associated with IPR001623 from INTERPRO and IPR001305 from INTERPRO. ; GO: 0051082 unfolded protein binding, 0006457 protein folding; PDB: 2Q2G_A 2QLD_A 3AGX_A 3AGZ_A 3AGY_A 3I38_J 3LZ8_B 2B26_B 1C3G_A 1XAO_B ....
Probab=99.03 E-value=2.7e-10 Score=84.19 Aligned_cols=72 Identities=24% Similarity=0.323 Sum_probs=56.5
Q ss_pred CEEEEEecchhhhccCceEEEEeeEEEEeCCCCcccccEEEEEEeCCCCCCCceEEeCccccCCC-CC-CCCcEEEEEEe
Q 024831 87 PIERTLPCSLEDLYKGTTKKMKISRDVIDASGRPNTTEEILTIEIKPGWKKGTKITFPEKGNELR-NV-IPSDLIFIIDE 164 (262)
Q Consensus 87 di~~~l~itLee~~~G~~k~i~~~r~~~~~~G~~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~-~~-~~gDlv~~i~~ 164 (262)
|++++++|||.||+.||+++|... +| +.++|.||+++++|++++++|+|.+.. +. ..|||++++++
T Consensus 1 DL~~~~~I~l~~al~G~~i~i~~l------~g------~~~~i~ip~~~~~g~~~~i~g~G~p~~~~~~~~GdL~v~~~V 68 (81)
T PF01556_consen 1 DLYCTIPISLKEALLGGTISIPTL------DG------KTIKIKIPPGTQPGQQLRIKGKGMPKPKGGGKRGDLIVKFEV 68 (81)
T ss_dssp EEEEEEEEEHHHHHH-EEEEEE-T------TS-------EEEEEETST-STT-EEEETTESEEESSSTTSBEEEEEEEEE
T ss_pred CeEEEEEeCHHHHhCCCEEEEECC------CC------CEEEEeccCccCCCcEEeecCCCCCcCCCCCCcCCEEEEEEE
Confidence 689999999999999999888665 55 489999999999999999999999663 33 68999999999
Q ss_pred eCCCCe
Q 024831 165 KPHSLF 170 (262)
Q Consensus 165 ~~h~~f 170 (262)
.-...+
T Consensus 69 ~~P~~l 74 (81)
T PF01556_consen 69 EFPKKL 74 (81)
T ss_dssp E--SST
T ss_pred ECCCCC
Confidence 754443
No 40
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.03 E-value=1.1e-09 Score=99.56 Aligned_cols=70 Identities=23% Similarity=0.270 Sum_probs=64.0
Q ss_pred eeeccceEEEEEecHHHHhCCCEEEEecCCCcEEEEeeCCccCCCcEEEEcCCCCCCCCCCCCCCCEEEEEEEeCCCC
Q 024831 171 KRDGNDLVVTQKISLVEALTGYTVQLTTLDGRTLTVPINSVISPTYEEVIKGEGMPIPKEPSKRGNLRIKFNIKFPSK 248 (262)
Q Consensus 171 ~R~G~DL~~~~~I~l~~Al~G~~i~i~tldG~~l~v~i~~~~~~g~~~~i~g~GmP~~~~~~~rGDL~V~~~V~~P~~ 248 (262)
.|+|+||++++.|+|.||++|+++.| +++++.++|+||+++++|++++++|+|++. |||||+++|.-+..
T Consensus 126 ~~~g~dl~~~l~isL~ea~~G~~~~i-~l~g~~~~V~Ip~G~~~G~~ir~~g~G~~~-------GDL~v~i~v~~h~~ 195 (291)
T PRK14299 126 ARKGRDLEAELPLTLEEAYRGGEKVV-EVAGERLSVRIPPGVREGQVIRLAGKGRQG-------GDLYLVVRLLPHPV 195 (291)
T ss_pred CCCCCCEEEEEEecHHHHhCCCeEEE-eeCCEEEEEecCCCcCCCcEEEECCCCCCC-------CCEEEEEEEcCCCC
Confidence 46799999999999999999999998 789988999999999999999999999872 99999999986654
No 41
>PRK14294 chaperone protein DnaJ; Provisional
Probab=98.99 E-value=9.9e-10 Score=102.81 Aligned_cols=86 Identities=17% Similarity=0.212 Sum_probs=74.8
Q ss_pred CCCCCCEEEEEecchhhhccCceEEEEeeEEEEeCCCCcccccEEEEEEeCCCCCCCceEEeCccccCCCC-CCCCcEEE
Q 024831 82 LRKAAPIERTLPCSLEDLYKGTTKKMKISRDVIDASGRPNTTEEILTIEIKPGWKKGTKITFPEKGNELRN-VIPSDLIF 160 (262)
Q Consensus 82 ~~~g~di~~~l~itLee~~~G~~k~i~~~r~~~~~~G~~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~-~~~gDlv~ 160 (262)
.+++.||++++.|||.||+.|++++|... +| .++|+||+|+++|++|+++|+|++.++ ..+|||+|
T Consensus 260 ~R~G~DL~~~~~Isl~eAl~G~~~~i~tl------dG-------~~~v~ip~g~~~g~~iri~G~G~p~~~~~~~GDL~V 326 (366)
T PRK14294 260 ERDGNDVHCKVPISFVQAALGAQIEVPTL------EG-------ERELKIPKGTQPGDIFRFKGKGIPSLRGGGRGDQII 326 (366)
T ss_pred eecCCCEEEEEEeCHHHHhCCCeEEEECC------CC-------cEEEEECCCcCCCCEEEECCCCCCCCCCCCCCCEEE
Confidence 46789999999999999999999988765 45 359999999999999999999998754 35899999
Q ss_pred EEEeeCCCCeeeeccceEEE
Q 024831 161 IIDEKPHSLFKRDGNDLVVT 180 (262)
Q Consensus 161 ~i~~~~h~~f~R~G~DL~~~ 180 (262)
+|++..|+.|+++..+|+..
T Consensus 327 ~~~v~~P~~l~~~q~~ll~~ 346 (366)
T PRK14294 327 EVEVKVPTRLTKKQEELLTE 346 (366)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 99999999999988777654
No 42
>PRK14285 chaperone protein DnaJ; Provisional
Probab=98.99 E-value=1e-09 Score=102.62 Aligned_cols=85 Identities=21% Similarity=0.293 Sum_probs=74.1
Q ss_pred CCCCCCEEEEEecchhhhccCceEEEEeeEEEEeCCCCcccccEEEEEEeCCCCCCCceEEeCccccCCCCC-CCCcEEE
Q 024831 82 LRKAAPIERTLPCSLEDLYKGTTKKMKISRDVIDASGRPNTTEEILTIEIKPGWKKGTKITFPEKGNELRNV-IPSDLIF 160 (262)
Q Consensus 82 ~~~g~di~~~l~itLee~~~G~~k~i~~~r~~~~~~G~~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~-~~gDlv~ 160 (262)
.+++.||+++++|||.||+.|++++|... +| ++++|+||+|+++|++|+++++|++.++. ..|||+|
T Consensus 262 ~R~G~dL~~~~~Isl~eAl~G~~~~i~tl------dG------~~v~V~Ip~g~~~g~~irl~GkG~p~~~~~~~GDL~V 329 (365)
T PRK14285 262 KRNGKDLYATLPISFTQAALGKEIKIQTI------AS------KKIKIKIPKGTENDEQIIIKNEGMPILHTEKFGNLIL 329 (365)
T ss_pred EEeccceEEEEecCHHHHhCCCEEEEECC------CC------CEEEEEeCCCcCCCcEEEECCCCccCCCCCCCCCEEE
Confidence 35688999999999999999999988775 55 37999999999999999999999987544 4699999
Q ss_pred EEEeeCCCCeeeeccceE
Q 024831 161 IIDEKPHSLFKRDGNDLV 178 (262)
Q Consensus 161 ~i~~~~h~~f~R~G~DL~ 178 (262)
+|++..|+.|++++..|+
T Consensus 330 ~~~v~~P~~l~~~q~~~l 347 (365)
T PRK14285 330 IIKIKTPKNLNSNAIKLL 347 (365)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 999999999988876554
No 43
>PRK14284 chaperone protein DnaJ; Provisional
Probab=98.93 E-value=2.1e-09 Score=101.40 Aligned_cols=85 Identities=18% Similarity=0.209 Sum_probs=72.2
Q ss_pred CCCCCCEEEEEecchhhhccCceEEEEeeEEEEeCC-CCcccccEEEEEEeCCCCCCCceEEeCccccCCCC-CCCCcEE
Q 024831 82 LRKAAPIERTLPCSLEDLYKGTTKKMKISRDVIDAS-GRPNTTEEILTIEIKPGWKKGTKITFPEKGNELRN-VIPSDLI 159 (262)
Q Consensus 82 ~~~g~di~~~l~itLee~~~G~~k~i~~~r~~~~~~-G~~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~-~~~gDlv 159 (262)
.+++.||+++++|||+||+.|++++|... + + ..++|+||+|+++|++++++++|.+..+ ..+|||+
T Consensus 274 ~R~G~DL~~~~~Isl~eAl~G~~~~v~tl------d~g------~~i~v~Ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~ 341 (391)
T PRK14284 274 ERRGDDLILELPIGFVDAALGMKKEIPTL------LKE------GTCRLTIPEGIQSGTILKVRGQGFPNVHGKGRGDLL 341 (391)
T ss_pred eeecCCEEEEEEecHHHHhCCCeEEEeec------CCC------cEEEEEECCccCCCeEEEECCCCCCCCCCCCCCcEE
Confidence 46789999999999999999999988754 2 2 3789999999999999999999998753 4689999
Q ss_pred EEEEeeCCCCeeeeccceE
Q 024831 160 FIIDEKPHSLFKRDGNDLV 178 (262)
Q Consensus 160 ~~i~~~~h~~f~R~G~DL~ 178 (262)
|+|++..++.++.+..+|+
T Consensus 342 V~~~v~~P~~l~~~q~~ll 360 (391)
T PRK14284 342 VRISVETPQNLSEEQKELL 360 (391)
T ss_pred EEEEEECCCCCCHHHHHHH
Confidence 9999999887777665554
No 44
>PRK10767 chaperone protein DnaJ; Provisional
Probab=98.92 E-value=2.2e-09 Score=100.60 Aligned_cols=86 Identities=15% Similarity=0.176 Sum_probs=75.0
Q ss_pred CCCCCCEEEEEecchhhhccCceEEEEeeEEEEeCCCCcccccEEEEEEeCCCCCCCceEEeCccccCCC-CCCCCcEEE
Q 024831 82 LRKAAPIERTLPCSLEDLYKGTTKKMKISRDVIDASGRPNTTEEILTIEIKPGWKKGTKITFPEKGNELR-NVIPSDLIF 160 (262)
Q Consensus 82 ~~~g~di~~~l~itLee~~~G~~k~i~~~r~~~~~~G~~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~-~~~~gDlv~ 160 (262)
.+++.||++++.|||.||+.|++++|... +| .++|+||+|+++|++++++|+|.+.+ +..+|||+|
T Consensus 258 ~R~G~DL~~~~~Isl~eAl~G~~~~i~~l------dG-------~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~v 324 (371)
T PRK10767 258 ERDGNDLYCEVPISFTTAALGGEIEVPTL------DG-------RVKLKIPEGTQTGKLFRLRGKGVKSVRSGARGDLYC 324 (371)
T ss_pred EEecCCEEEEEEeCHHHHhCCCeEEEecC------CC-------cEEEEeCCCCCCCCEEEECCCCcCCCCCCCCCCEEE
Confidence 35688999999999999999999988654 45 68999999999999999999999864 345799999
Q ss_pred EEEeeCCCCeeeeccceEEE
Q 024831 161 IIDEKPHSLFKRDGNDLVVT 180 (262)
Q Consensus 161 ~i~~~~h~~f~R~G~DL~~~ 180 (262)
+|++..++.+++++.+|+.+
T Consensus 325 ~~~v~~P~~l~~~~~~ll~~ 344 (371)
T PRK10767 325 QVVVETPVNLTKRQKELLEE 344 (371)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 99999999999998887654
No 45
>PRK14298 chaperone protein DnaJ; Provisional
Probab=98.91 E-value=2.2e-09 Score=100.78 Aligned_cols=86 Identities=16% Similarity=0.200 Sum_probs=74.3
Q ss_pred CCCCCCEEEEEecchhhhccCceEEEEeeEEEEeCCCCcccccEEEEEEeCCCCCCCceEEeCccccCCCC-CCCCcEEE
Q 024831 82 LRKAAPIERTLPCSLEDLYKGTTKKMKISRDVIDASGRPNTTEEILTIEIKPGWKKGTKITFPEKGNELRN-VIPSDLIF 160 (262)
Q Consensus 82 ~~~g~di~~~l~itLee~~~G~~k~i~~~r~~~~~~G~~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~-~~~gDlv~ 160 (262)
.+++.||++++.|||.||+.|++++|... +| .++|.||+|+++|++++++++|.+..+ ...|||+|
T Consensus 261 ~R~G~DL~~~~~Isl~eAl~G~~~~i~tl------dG-------~i~v~ip~g~~~g~~lri~g~G~p~~~~~~~GDL~V 327 (377)
T PRK14298 261 ERVGDDIISEIPISFTQAALGADIMVPTL------YG-------KVKMNIPPGTQTHSVFRLKDKGMPRLHGHGKGDQLV 327 (377)
T ss_pred EEEcCcEEEEEEeCHHHHhCCCeEEEecC------CC-------CEEEEeCCCcccCCEEEECCCCCCCCCCCCCCCEEE
Confidence 35689999999999999999999888765 45 379999999999999999999998643 35799999
Q ss_pred EEEeeCCCCeeeeccceEEE
Q 024831 161 IIDEKPHSLFKRDGNDLVVT 180 (262)
Q Consensus 161 ~i~~~~h~~f~R~G~DL~~~ 180 (262)
+|++..++.+++++.+|+.+
T Consensus 328 ~~~V~~P~~ls~~~~~ll~~ 347 (377)
T PRK14298 328 KVIVKTPTKLTQEQKELLRE 347 (377)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 99999999999988777654
No 46
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=98.89 E-value=3.8e-09 Score=98.45 Aligned_cols=83 Identities=17% Similarity=0.234 Sum_probs=71.3
Q ss_pred CCCCCCEEEEEecchhhhccCceEEEEeeEEEEeCCCCcccccEEEEEEeCCCCCCCceEEeCccccCCCC-CCCCcEEE
Q 024831 82 LRKAAPIERTLPCSLEDLYKGTTKKMKISRDVIDASGRPNTTEEILTIEIKPGWKKGTKITFPEKGNELRN-VIPSDLIF 160 (262)
Q Consensus 82 ~~~g~di~~~l~itLee~~~G~~k~i~~~r~~~~~~G~~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~-~~~gDlv~ 160 (262)
.+++.||+++++|||+||+.|+++.|... +| .++|.||+|+++|++++++++|.+.++ ..+|||+|
T Consensus 263 ~r~g~DL~~~~~isl~eAl~G~~~~i~~l------dG-------~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~i 329 (354)
T TIGR02349 263 ERDGNDLYIEVPISFTQAILGGEIEVPTL------DG-------DVKLKIPAGTQSGTVFRLKGKGVPRLRGNGRGDLLV 329 (354)
T ss_pred EEecCCEEEEEEeCHHHHhCCCeEEEecC------Cc-------eEEEEECCcccCCcEEEECCCCcCCCCCCCCCCEEE
Confidence 35688999999999999999999888654 44 689999999999999999999998754 36899999
Q ss_pred EEEeeCCCCeeeeccce
Q 024831 161 IIDEKPHSLFKRDGNDL 177 (262)
Q Consensus 161 ~i~~~~h~~f~R~G~DL 177 (262)
+|++..++.++++..++
T Consensus 330 ~~~v~~P~~l~~~~~~~ 346 (354)
T TIGR02349 330 TVKVETPKNLSKEQKEL 346 (354)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 99999988887766544
No 47
>PRK14287 chaperone protein DnaJ; Provisional
Probab=98.88 E-value=4.1e-09 Score=98.86 Aligned_cols=84 Identities=15% Similarity=0.188 Sum_probs=71.8
Q ss_pred CCCCCCEEEEEecchhhhccCceEEEEeeEEEEeCCCCcccccEEEEEEeCCCCCCCceEEeCccccCCC-CCCCCcEEE
Q 024831 82 LRKAAPIERTLPCSLEDLYKGTTKKMKISRDVIDASGRPNTTEEILTIEIKPGWKKGTKITFPEKGNELR-NVIPSDLIF 160 (262)
Q Consensus 82 ~~~g~di~~~l~itLee~~~G~~k~i~~~r~~~~~~G~~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~-~~~~gDlv~ 160 (262)
.+++.||++++.|||.||+.|++++|... +| .++|+||+|+++|++++++++|.+.. +..+|||+|
T Consensus 258 ~R~G~DL~~~~~Isl~eAl~G~~~~i~~l------dg-------~i~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~V 324 (371)
T PRK14287 258 ERDGDDIYCEMPLTFPQVALGDEIEVPTL------NG-------KVKLKIPAGTQTGTSFRLRGKGVPNVHGRGQGDQHV 324 (371)
T ss_pred EEecCCeEEEEeccHHHHhCCCEEEEEcC------CC-------CEEEEECCCccCCcEEEEcCCCccCCCCCCCCCEEE
Confidence 36689999999999999999999988664 45 47999999999999999999999864 345799999
Q ss_pred EEEeeCCCCeeeeccceE
Q 024831 161 IIDEKPHSLFKRDGNDLV 178 (262)
Q Consensus 161 ~i~~~~h~~f~R~G~DL~ 178 (262)
+|++..++.++++...|+
T Consensus 325 ~~~v~~P~~l~~~q~~ll 342 (371)
T PRK14287 325 QVRVVTPKNLTEKEKELM 342 (371)
T ss_pred EEEEEcCCCCCHHHHHHH
Confidence 999999988887665544
No 48
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=98.87 E-value=1.1e-08 Score=93.66 Aligned_cols=74 Identities=26% Similarity=0.407 Sum_probs=62.2
Q ss_pred eeccceEEEEEecHHHHhCCCEEEE----ecCC--C-------cEEEEeeCCccCCCcEEEEcCCCCCCCCCCCCCCCEE
Q 024831 172 RDGNDLVVTQKISLVEALTGYTVQL----TTLD--G-------RTLTVPINSVISPTYEEVIKGEGMPIPKEPSKRGNLR 238 (262)
Q Consensus 172 R~G~DL~~~~~I~l~~Al~G~~i~i----~tld--G-------~~l~v~i~~~~~~g~~~~i~g~GmP~~~~~~~rGDL~ 238 (262)
|+++||++++.|+|.||++|+..+| ++++ | +.+.|+||+++++|++++++|+|+|... ...+||||
T Consensus 115 ~kg~di~~~v~isLee~~~G~~k~i~~~~~~~~g~G~~~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~-~~~~GDl~ 193 (306)
T PRK10266 115 ARGHDIEIEVAVFLEETLTEHKRTISYNLPVYNAFGMIEQEIPKTLNVKIPAGVGNGQRIRLKGQGTPGEN-GGPNGDLW 193 (306)
T ss_pred CCCCceEEEEEEEHHHhcCCceEEEEEecccccCCCeEEEeeeEEEEEEECCCCcCCcEEEEecCCcCCCC-CCCCccEE
Confidence 4689999999999999999995433 4454 3 5689999999999999999999999643 45789999
Q ss_pred EEEEEeCCC
Q 024831 239 IKFNIKFPS 247 (262)
Q Consensus 239 V~~~V~~P~ 247 (262)
|+++|. |.
T Consensus 194 v~i~v~-ph 201 (306)
T PRK10266 194 LVIHIA-PH 201 (306)
T ss_pred EEEEEc-CC
Confidence 999998 54
No 49
>PRK14300 chaperone protein DnaJ; Provisional
Probab=98.87 E-value=5.6e-09 Score=97.97 Aligned_cols=82 Identities=17% Similarity=0.251 Sum_probs=70.1
Q ss_pred CCCCCCEEEEEecchhhhccCceEEEEeeEEEEeCCCCcccccEEEEEEeCCCCCCCceEEeCccccCCCC-CCCCcEEE
Q 024831 82 LRKAAPIERTLPCSLEDLYKGTTKKMKISRDVIDASGRPNTTEEILTIEIKPGWKKGTKITFPEKGNELRN-VIPSDLIF 160 (262)
Q Consensus 82 ~~~g~di~~~l~itLee~~~G~~k~i~~~r~~~~~~G~~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~-~~~gDlv~ 160 (262)
.+++.||+++++|||.||+.|++++|... +| +.++|+||+|+++|++|+++++|.+.++ ..+|||+|
T Consensus 261 ~R~G~Dl~~~~~Isl~~Al~G~~~~i~~l------dg------~~i~v~Ip~g~~~g~~iri~g~G~p~~~~~~~GDL~V 328 (372)
T PRK14300 261 KVDGANLHCKLPISFVNAALGGEIEVPVI------EG------GKVNLTIPAGTQNGDQLRLRSKGMSKMRSTIRGDMLT 328 (372)
T ss_pred EEecCCEEEEEecCHHHHhCCCEEEEecC------CC------CEEEEEECCccCCCcEEEECCCCCCCCCCCCCCCEEE
Confidence 36688999999999999999999998775 44 3799999999999999999999998753 46899999
Q ss_pred EEEeeCCCCeeeecc
Q 024831 161 IIDEKPHSLFKRDGN 175 (262)
Q Consensus 161 ~i~~~~h~~f~R~G~ 175 (262)
+|++..+..+.-+..
T Consensus 329 ~~~v~~P~~ls~~qk 343 (372)
T PRK14300 329 HIHVEVPKNLSKRQR 343 (372)
T ss_pred EEEEECCCCCCHHHH
Confidence 999998876655443
No 50
>PRK14291 chaperone protein DnaJ; Provisional
Probab=98.85 E-value=1.2e-08 Score=96.16 Aligned_cols=75 Identities=21% Similarity=0.289 Sum_probs=65.3
Q ss_pred CCCCCCEEEEEecchhhhccCceEEEEeeEEEEeCCCCcccccEEEEEEeCCCCCCCceEEeCccccCCCC-CCCCcEEE
Q 024831 82 LRKAAPIERTLPCSLEDLYKGTTKKMKISRDVIDASGRPNTTEEILTIEIKPGWKKGTKITFPEKGNELRN-VIPSDLIF 160 (262)
Q Consensus 82 ~~~g~di~~~l~itLee~~~G~~k~i~~~r~~~~~~G~~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~-~~~gDlv~ 160 (262)
.+++.||++++.|||+||+.|++++|+.. +|+ .++|+||+|+++|++|+++++|++.++ ..+|||+|
T Consensus 271 ~r~G~DL~~~~~Isl~eAl~G~~~~i~~l------dG~------~l~V~Ip~g~~~G~~i~i~G~G~p~~~~~~~GDL~V 338 (382)
T PRK14291 271 ERRGDNLYLDVNITVAEAVLGTELEVPLL------DGK------KEKVKIPPGTKEGDKIRVPGKGMPRLKGSGYGDLVV 338 (382)
T ss_pred eeecCCeEEEEEeeHHHHhCCCEEEEecC------CCC------EEEEEECCccCCCCEEEECCCCCCCCCCCCCCCEEE
Confidence 35688999999999999999999999875 563 789999999999999999999998753 45799999
Q ss_pred EEEeeCCC
Q 024831 161 IIDEKPHS 168 (262)
Q Consensus 161 ~i~~~~h~ 168 (262)
+|++.-..
T Consensus 339 ~~~V~~P~ 346 (382)
T PRK14291 339 RVHIDVPK 346 (382)
T ss_pred EEEEEeCC
Confidence 99997554
No 51
>PRK14279 chaperone protein DnaJ; Provisional
Probab=98.85 E-value=6.5e-09 Score=98.14 Aligned_cols=78 Identities=18% Similarity=0.251 Sum_probs=66.9
Q ss_pred CCCCCCEEEEEecchhhhccCceEEEEeeEEEEeCCCCcccccEEEEEEeCCCCCCCceEEeCccccCCCCCCCCcEEEE
Q 024831 82 LRKAAPIERTLPCSLEDLYKGTTKKMKISRDVIDASGRPNTTEEILTIEIKPGWKKGTKITFPEKGNELRNVIPSDLIFI 161 (262)
Q Consensus 82 ~~~g~di~~~l~itLee~~~G~~k~i~~~r~~~~~~G~~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~gDlv~~ 161 (262)
.+++.||+++++|||.||+.|.+++|... +| .++|+||+|+++|++|+++++|++..+..+|||+|+
T Consensus 289 ~R~G~DL~~~~~Isl~eAl~G~~~~v~~l------dg-------~i~v~Ip~g~~~g~~iri~g~G~p~~~~~~GDL~I~ 355 (392)
T PRK14279 289 GRDGDDLTVTVPVSFTELALGSTLSVPTL------DG-------PVGVKVPAGTADGRILRVRGRGVPKRSGGAGDLLVT 355 (392)
T ss_pred eeecCcEEEEEEccHHHHcCCceEEEEcC------Cc-------eEEEEECCCCCCCCEEEECCCCCCCCCCCCCCEEEE
Confidence 46789999999999999999999888654 34 589999999999999999999998765668999999
Q ss_pred EEeeCCCCeee
Q 024831 162 IDEKPHSLFKR 172 (262)
Q Consensus 162 i~~~~h~~f~R 172 (262)
|++.-+....-
T Consensus 356 ~~v~~P~~Ls~ 366 (392)
T PRK14279 356 VKVAVPPNLDG 366 (392)
T ss_pred EEEECCCCCCH
Confidence 99987654433
No 52
>PRK14301 chaperone protein DnaJ; Provisional
Probab=98.83 E-value=7.3e-09 Score=97.21 Aligned_cols=84 Identities=15% Similarity=0.187 Sum_probs=71.1
Q ss_pred CCCCCCEEEEEecchhhhccCceEEEEeeEEEEeCCCCcccccEEEEEEeCCCCCCCceEEeCccccCCCC-CCCCcEEE
Q 024831 82 LRKAAPIERTLPCSLEDLYKGTTKKMKISRDVIDASGRPNTTEEILTIEIKPGWKKGTKITFPEKGNELRN-VIPSDLIF 160 (262)
Q Consensus 82 ~~~g~di~~~l~itLee~~~G~~k~i~~~r~~~~~~G~~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~-~~~gDlv~ 160 (262)
.+++.||+++++|||.||+.|++++|... +| .++|+||+|+++|++++++|+|.+.++ ..+|||+|
T Consensus 260 ~r~G~DL~~~~~Isl~eAl~G~~~~v~tl------dG-------~i~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~I 326 (373)
T PRK14301 260 QRQGQDLVVTQEISFVQAALGDRIEVPTL------DD-------PVTLDIPKGTQSGEVFRLRGKGLPYLGSSQKGDLLV 326 (373)
T ss_pred eeecCcEEEEEEecHHHHhCCCeEEEecC------Cc-------cEEEEECCCcCCCcEEEEcCCCCCCCCCCCCCCEEE
Confidence 46689999999999999999999988654 44 489999999999999999999998754 35799999
Q ss_pred EEEeeCCCCeeeeccceE
Q 024831 161 IIDEKPHSLFKRDGNDLV 178 (262)
Q Consensus 161 ~i~~~~h~~f~R~G~DL~ 178 (262)
+|++..++.+..+..+|+
T Consensus 327 ~~~V~~P~~l~~~q~~~l 344 (373)
T PRK14301 327 EVSVVTPTKLTKRQEELL 344 (373)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 999998887766554443
No 53
>PRK14295 chaperone protein DnaJ; Provisional
Probab=98.81 E-value=1.1e-08 Score=96.54 Aligned_cols=78 Identities=17% Similarity=0.283 Sum_probs=66.6
Q ss_pred CCCCCCEEEEEecchhhhccCceEEEEeeEEEEeCCCCcccccEEEEEEeCCCCCCCceEEeCccccCCCCCCCCcEEEE
Q 024831 82 LRKAAPIERTLPCSLEDLYKGTTKKMKISRDVIDASGRPNTTEEILTIEIKPGWKKGTKITFPEKGNELRNVIPSDLIFI 161 (262)
Q Consensus 82 ~~~g~di~~~l~itLee~~~G~~k~i~~~r~~~~~~G~~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~gDlv~~ 161 (262)
.+++.||+++++|||.||+.|++++|... +| +.++|+||+|+++|++|+++|+|.+..+..+|||+|+
T Consensus 282 ~R~G~DL~~~~~Isl~eAl~G~~~~I~tl------dG------~~~~v~ip~g~~~g~~iri~G~G~p~~~~~~GDL~i~ 349 (389)
T PRK14295 282 GRSGDNLTVTVPVTFPEAALGAEVRVPTL------GG------PPVTVKLPPGTPNGRVLRVRGKGAVRKDGTRGDLLVT 349 (389)
T ss_pred EEecCCEEEEEeecHHHHhCCCeEEEECC------CC------CEEEEEECCccCCCcEEEECCCCcCCCCCCCCCEEEE
Confidence 36688999999999999999999888654 45 3799999999999999999999998755668999999
Q ss_pred EEeeCCCCee
Q 024831 162 IDEKPHSLFK 171 (262)
Q Consensus 162 i~~~~h~~f~ 171 (262)
|++.-.....
T Consensus 350 ~~v~~P~~Ls 359 (389)
T PRK14295 350 VEVAVPKDLS 359 (389)
T ss_pred EEEECCCCCC
Confidence 9998655433
No 54
>PRK14288 chaperone protein DnaJ; Provisional
Probab=98.81 E-value=1.1e-08 Score=95.88 Aligned_cols=83 Identities=14% Similarity=0.187 Sum_probs=71.1
Q ss_pred CCCCCCEEEEEecchhhhccCceEEEEeeEEEEeCCCCcccccEEEEEEeCCCCCCCceEEeCccccCCCCC-CCCcEEE
Q 024831 82 LRKAAPIERTLPCSLEDLYKGTTKKMKISRDVIDASGRPNTTEEILTIEIKPGWKKGTKITFPEKGNELRNV-IPSDLIF 160 (262)
Q Consensus 82 ~~~g~di~~~l~itLee~~~G~~k~i~~~r~~~~~~G~~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~-~~gDlv~ 160 (262)
.+++.||+++++|||.||+.|++++|... +|+ .++|+||+++++|++++++|+|.+.++. ..|||+|
T Consensus 254 ~R~G~DL~~~~~Isl~eAllG~~i~v~tL------dG~------~l~i~i~~~~~~g~~~~i~g~G~p~~~~~~~GDL~v 321 (369)
T PRK14288 254 KREGCDLFIEAPVFFTTIALGHTIKVPSL------KGD------ELELKIPRNARDRQTFAFRNEGVKHPESSYRGSLIV 321 (369)
T ss_pred EEeCCEEEEEEecCHHHHhcCCEEEeecC------CCC------EEEEEeCCCCCCCcEEEEcCCCCCCCCCCCCCCEEE
Confidence 46789999999999999999999888766 563 6899999999999999999999987553 4699999
Q ss_pred EEEeeCCCCeeeeccc
Q 024831 161 IIDEKPHSLFKRDGND 176 (262)
Q Consensus 161 ~i~~~~h~~f~R~G~D 176 (262)
+|++.-+..+..+...
T Consensus 322 ~~~v~~P~~ls~~q~~ 337 (369)
T PRK14288 322 ELQVIYPKSLNKEQQE 337 (369)
T ss_pred EEEEECCCCCCHHHHH
Confidence 9999988877665543
No 55
>PRK14293 chaperone protein DnaJ; Provisional
Probab=98.78 E-value=9.6e-09 Score=96.47 Aligned_cols=86 Identities=17% Similarity=0.196 Sum_probs=74.0
Q ss_pred CCCCCCEEEEEecchhhhccCceEEEEeeEEEEeCCCCcccccEEEEEEeCCCCCCCceEEeCccccCCCCC--CCCcEE
Q 024831 82 LRKAAPIERTLPCSLEDLYKGTTKKMKISRDVIDASGRPNTTEEILTIEIKPGWKKGTKITFPEKGNELRNV--IPSDLI 159 (262)
Q Consensus 82 ~~~g~di~~~l~itLee~~~G~~k~i~~~r~~~~~~G~~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~--~~gDlv 159 (262)
.+++.|++++++|||.||+.|++++|... +| .++|.||+++++|++++++|+|.+.++. ..|||+
T Consensus 263 ~r~g~DL~~~~~Isl~eAl~G~~~~i~~l------dG-------~~~i~ip~~~~~g~~~ri~g~G~p~~~~~~~~GDL~ 329 (374)
T PRK14293 263 RRDGINILSEIKISYLQAILGDTLEVDTV------DG-------PVELTIPAGTQPNTVLTLENKGVPRLGNPVARGDHL 329 (374)
T ss_pred ChhhhceEEEeccCHHHHhCCCEEEecCC------CC-------CEEEEeCCCCCCCCEEEECCCCCCCCCCCCCcCCEE
Confidence 35678999999999999999999998775 45 3689999999999999999999986543 479999
Q ss_pred EEEEeeCCCCeeeeccceEEE
Q 024831 160 FIIDEKPHSLFKRDGNDLVVT 180 (262)
Q Consensus 160 ~~i~~~~h~~f~R~G~DL~~~ 180 (262)
|+|++..++.+++++.+|+..
T Consensus 330 v~~~v~~P~~l~~~~~~l~~~ 350 (374)
T PRK14293 330 ITVKVKIPTRISDEERELLEK 350 (374)
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 999999999898888777543
No 56
>PRK14289 chaperone protein DnaJ; Provisional
Probab=98.76 E-value=2.2e-08 Score=94.39 Aligned_cols=56 Identities=14% Similarity=0.197 Sum_probs=47.1
Q ss_pred cEEEEeeCCccCCCcEEEEcCCCCCCCCCCCCCCCEEEEEEEeCCCCCCHHHHHHHH
Q 024831 202 RTLTVPINSVISPTYEEVIKGEGMPIPKEPSKRGNLRIKFNIKFPSKLTTEQKSGLK 258 (262)
Q Consensus 202 ~~l~v~i~~~~~~g~~~~i~g~GmP~~~~~~~rGDL~V~~~V~~P~~ls~~qk~~l~ 258 (262)
+.+.|+||+++++|++++|+|+|+|... ...+|||||+|+|..|..+..+..+++.
T Consensus 227 ~~~~V~Ip~G~~~G~~i~l~g~G~~~~~-~~~~GDL~v~v~v~~~~~f~r~g~DL~~ 282 (386)
T PRK14289 227 EVITVKIPAGVAEGMQLSMNGKGNAGKH-GGVNGDLLVVIEEEPHPELIRDENDLIY 282 (386)
T ss_pred EEEEEEeCCCCCCCCEEEEeccccCCCC-CCCCccEEEEEEEecCCcccccccceeE
Confidence 4688999999999999999999999544 3568999999999999988776655543
No 57
>PRK14286 chaperone protein DnaJ; Provisional
Probab=98.75 E-value=2.2e-08 Score=94.00 Aligned_cols=84 Identities=15% Similarity=0.155 Sum_probs=69.6
Q ss_pred CCCCCCEEEEEecchhhhccCceEEEEeeEEEEeCCCCcccccEEEEEEeCCCCCCCceEEeCccccCCCC-CCCCcEEE
Q 024831 82 LRKAAPIERTLPCSLEDLYKGTTKKMKISRDVIDASGRPNTTEEILTIEIKPGWKKGTKITFPEKGNELRN-VIPSDLIF 160 (262)
Q Consensus 82 ~~~g~di~~~l~itLee~~~G~~k~i~~~r~~~~~~G~~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~-~~~gDlv~ 160 (262)
.+++.||++++.|||.||++|++++|... +|+ .++|.||+++++|++++++|+|.+..+ ...|||+|
T Consensus 266 ~R~G~DL~~~~~Isl~eAl~G~~~~i~tl------dG~------~i~v~ip~g~~~g~~~ri~G~G~P~~~~~~~GDL~V 333 (372)
T PRK14286 266 ERQGNDLILVRKISLAQAILGAEIEVPTI------DGK------KAKMKIPEGTESGQVFRLKGHGMPYLGAYGKGDQHV 333 (372)
T ss_pred EEecCCEEEEEEECHHHHhCCCEEEEeCC------CCC------EEEEEeCCccCCCcEEEECCCCCCCCCCCCCCcEEE
Confidence 35688999999999999999999888664 563 799999999999999999999998643 35799999
Q ss_pred EEEeeCCCCeeeeccce
Q 024831 161 IIDEKPHSLFKRDGNDL 177 (262)
Q Consensus 161 ~i~~~~h~~f~R~G~DL 177 (262)
+|++.-+..+..+..+|
T Consensus 334 ~~~V~~P~~Ls~~qk~~ 350 (372)
T PRK14286 334 IVKIEIPKKITRRQREL 350 (372)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 99998776555544433
No 58
>PRK14276 chaperone protein DnaJ; Provisional
Probab=98.74 E-value=2.2e-08 Score=94.26 Aligned_cols=79 Identities=20% Similarity=0.207 Sum_probs=66.7
Q ss_pred CCCCCCEEEEEecchhhhccCceEEEEeeEEEEeCCCCcccccEEEEEEeCCCCCCCceEEeCccccCCCC-CCCCcEEE
Q 024831 82 LRKAAPIERTLPCSLEDLYKGTTKKMKISRDVIDASGRPNTTEEILTIEIKPGWKKGTKITFPEKGNELRN-VIPSDLIF 160 (262)
Q Consensus 82 ~~~g~di~~~l~itLee~~~G~~k~i~~~r~~~~~~G~~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~-~~~gDlv~ 160 (262)
.+++.||+++++|||+||+.|++++|... +| .++|+||+|+++|++++++++|.+..+ ..+|||+|
T Consensus 266 ~R~G~DL~~~~~Isl~eAl~G~~~~v~tl------dg-------~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~V 332 (380)
T PRK14276 266 ERDGSTIYYTLPISFVQAALGDTVEVPTV------HG-------DVELKIPAGTQTGKKFRLRGKGAPKLRGGGNGDQHV 332 (380)
T ss_pred eeecceEEEEEecCHHHHhCCCeEEEEcC------CC-------cEEEEECCCCCCCCEEEECCCCcCCCCCCCCCCEEE
Confidence 36688999999999999999999988775 44 479999999999999999999998753 45799999
Q ss_pred EEEeeCCCCeeee
Q 024831 161 IIDEKPHSLFKRD 173 (262)
Q Consensus 161 ~i~~~~h~~f~R~ 173 (262)
+|++.-......+
T Consensus 333 ~~~v~~P~~l~~~ 345 (380)
T PRK14276 333 TVNIVTPTKLNDA 345 (380)
T ss_pred EEEEECCCCCCHH
Confidence 9999866544433
No 59
>PRK14292 chaperone protein DnaJ; Provisional
Probab=98.72 E-value=2.2e-08 Score=93.88 Aligned_cols=83 Identities=16% Similarity=0.150 Sum_probs=70.2
Q ss_pred CCCCCCEEEEEecchhhhccCceEEEEeeEEEEeCCCCcccccEEEEEEeCCCCCCCceEEeCccccCCC-CCCCCcEEE
Q 024831 82 LRKAAPIERTLPCSLEDLYKGTTKKMKISRDVIDASGRPNTTEEILTIEIKPGWKKGTKITFPEKGNELR-NVIPSDLIF 160 (262)
Q Consensus 82 ~~~g~di~~~l~itLee~~~G~~k~i~~~r~~~~~~G~~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~-~~~~gDlv~ 160 (262)
.+++.||+++++|||.||+.|++++|... +| .++|.||+|+++|++++++++|++.+ +..+|||+|
T Consensus 258 ~r~g~dL~~~~~isl~eAl~G~~~~i~tl------dG-------~~~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~V 324 (371)
T PRK14292 258 RREQEHLIYEARIGFAKAALGGQITVPTL------DG-------PQVIEVKPGTQHGDLHRLRGQGMPRLQGAGTGDLIV 324 (371)
T ss_pred ccchhceeEEeccCHHHHhCCCeEEEECC------CC-------CEEEecCCCcCCCcEEEECCCCCCCCCCCCCCCEEE
Confidence 46688999999999999999999998754 45 23699999999999999999999874 445799999
Q ss_pred EEEeeCCCCeeeeccce
Q 024831 161 IIDEKPHSLFKRDGNDL 177 (262)
Q Consensus 161 ~i~~~~h~~f~R~G~DL 177 (262)
+|++..++.++.+...|
T Consensus 325 ~~~v~~P~~l~~~q~~l 341 (371)
T PRK14292 325 EYEIAVPKQLSPEAREA 341 (371)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 99999998777665444
No 60
>PRK14280 chaperone protein DnaJ; Provisional
Probab=98.71 E-value=3.5e-08 Score=92.73 Aligned_cols=78 Identities=15% Similarity=0.195 Sum_probs=65.7
Q ss_pred CCCCCCEEEEEecchhhhccCceEEEEeeEEEEeCCCCcccccEEEEEEeCCCCCCCceEEeCccccCCC-CCCCCcEEE
Q 024831 82 LRKAAPIERTLPCSLEDLYKGTTKKMKISRDVIDASGRPNTTEEILTIEIKPGWKKGTKITFPEKGNELR-NVIPSDLIF 160 (262)
Q Consensus 82 ~~~g~di~~~l~itLee~~~G~~k~i~~~r~~~~~~G~~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~-~~~~gDlv~ 160 (262)
.+++.||++++.|||.||+.|++++|... +| .++|+||+|+++|++++++++|.+.. +..+|||+|
T Consensus 263 ~R~G~DL~~~~~Isl~eAl~G~~~~i~tl------dg-------~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~v 329 (376)
T PRK14280 263 ERDGDDIYCEMPLTFAQAALGDEIEVPTL------HG-------KVKLKIPAGTQTGTQFRLKGKGVPNVRGYGQGDQYV 329 (376)
T ss_pred EEecCCEEEEEecCHHHHhCCCEEEEecC------Cc-------eEEEEECCCCCCCcEEEEcCCCCCCCCCCCCCCEEE
Confidence 36689999999999999999999888755 44 47999999999999999999999864 345799999
Q ss_pred EEEeeCCCCeee
Q 024831 161 IIDEKPHSLFKR 172 (262)
Q Consensus 161 ~i~~~~h~~f~R 172 (262)
+|++........
T Consensus 330 ~~~v~~P~~Ls~ 341 (376)
T PRK14280 330 VVRVVTPTKLTD 341 (376)
T ss_pred EEEEECCCCCCH
Confidence 999986654443
No 61
>PRK14281 chaperone protein DnaJ; Provisional
Probab=98.69 E-value=3.9e-08 Score=93.07 Aligned_cols=78 Identities=19% Similarity=0.196 Sum_probs=65.5
Q ss_pred CCCCCCEEEEEecchhhhccCceEEEEeeEEEEeCCCCcccccEEEEEEeCCCCCCCceEEeCccccCCCC-CCCCcEEE
Q 024831 82 LRKAAPIERTLPCSLEDLYKGTTKKMKISRDVIDASGRPNTTEEILTIEIKPGWKKGTKITFPEKGNELRN-VIPSDLIF 160 (262)
Q Consensus 82 ~~~g~di~~~l~itLee~~~G~~k~i~~~r~~~~~~G~~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~-~~~gDlv~ 160 (262)
.+++.||+++++|||.||+.|++++|... +| .++|+||+|+++|++++++|+|.+..+ ...|||+|
T Consensus 282 ~R~G~DL~~~~~Isl~eAl~G~~~~i~tl------dg-------~i~v~ip~g~~~G~~~ri~g~G~P~~~~~~~GDL~V 348 (397)
T PRK14281 282 VRNGDDVIYNLAVSYPDLVLGTKVEVPTL------DG-------AVKLTIPAGTQPETMLRIPGKGIGHLRGSGRGDQYV 348 (397)
T ss_pred EEecCCEEEEEEecHHHHhcCCeEEeecC------Cc-------cEEEEeCCccCCCcEEEEcCCCCCCCCCCCCCCEEE
Confidence 35688999999999999999999888765 44 479999999999999999999998643 45799999
Q ss_pred EEEeeCCCCeee
Q 024831 161 IIDEKPHSLFKR 172 (262)
Q Consensus 161 ~i~~~~h~~f~R 172 (262)
+|++.-......
T Consensus 349 ~~~V~~P~~Ls~ 360 (397)
T PRK14281 349 RVNVFVPKEVSH 360 (397)
T ss_pred EEEEEcCCCCCH
Confidence 999986554433
No 62
>PRK14278 chaperone protein DnaJ; Provisional
Probab=98.65 E-value=7.4e-08 Score=90.62 Aligned_cols=79 Identities=20% Similarity=0.197 Sum_probs=65.7
Q ss_pred CCCCCCEEEEEecchhhhccCceEEEEeeEEEEeCCCCcccccEEEEEEeCCCCCCCceEEeCccccCCC-CCCCCcEEE
Q 024831 82 LRKAAPIERTLPCSLEDLYKGTTKKMKISRDVIDASGRPNTTEEILTIEIKPGWKKGTKITFPEKGNELR-NVIPSDLIF 160 (262)
Q Consensus 82 ~~~g~di~~~l~itLee~~~G~~k~i~~~r~~~~~~G~~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~-~~~~gDlv~ 160 (262)
.+++.||+++++|||.||+.|++++|... ++ ..++|.||+|+++|++++++|+|.+.. +..+|||+|
T Consensus 259 ~R~G~DL~~~~~Isl~eAl~G~~~~i~tl------d~------~~i~v~ip~g~~~g~~lrl~g~G~p~~~~~~~GDL~V 326 (378)
T PRK14278 259 VRDGDDLHCTVSVPMVDAALGTTVTVEAI------LD------GPSEITIPPGTQPGSVITLRGRGMPHLRSGGRGDLHA 326 (378)
T ss_pred EEcCCCEEEEEecCHHHHhcCCeEEEecC------CC------CeEEEEeCCCcCCCcEEEECCCCCCCCCCCCCCCEEE
Confidence 36789999999999999999999888743 22 278999999999999999999999864 345899999
Q ss_pred EEEeeCCCCeee
Q 024831 161 IIDEKPHSLFKR 172 (262)
Q Consensus 161 ~i~~~~h~~f~R 172 (262)
+|++.-...+..
T Consensus 327 ~~~V~~P~~Ls~ 338 (378)
T PRK14278 327 HVEVVVPTRLDH 338 (378)
T ss_pred EEEEEcCCCCCH
Confidence 999976554433
No 63
>PRK14297 chaperone protein DnaJ; Provisional
Probab=98.65 E-value=5.6e-08 Score=91.48 Aligned_cols=77 Identities=18% Similarity=0.117 Sum_probs=65.0
Q ss_pred CCCCCEEEEEecchhhhccCceEEEEeeEEEEeCCCCcccccEEEEEEeCCCCCCCceEEeCccccCCC-CCCCCcEEEE
Q 024831 83 RKAAPIERTLPCSLEDLYKGTTKKMKISRDVIDASGRPNTTEEILTIEIKPGWKKGTKITFPEKGNELR-NVIPSDLIFI 161 (262)
Q Consensus 83 ~~g~di~~~l~itLee~~~G~~k~i~~~r~~~~~~G~~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~-~~~~gDlv~~ 161 (262)
+++.||++++.|||.||+.|++++|... +| .++|+||+|+++|++++++|+|.+.. +..+|||+|+
T Consensus 269 R~G~DL~~~~~Isl~eAl~G~~~~i~~l------dg-------~~~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~v~ 335 (380)
T PRK14297 269 RKGFDIYIDKHISFAKAALGTEIKVPTV------DG-------EVKYEVPAGTQPGTVFRLKGKGVPRVNSTGRGNQYVT 335 (380)
T ss_pred EeCCCEEEEEEeCHHHHhCCCcEEEEcC------CC-------cEEEEECCCcCCCCEEEEcCCCcCCCCCCCCCcEEEE
Confidence 5688999999999999999999988765 44 47999999999999999999998764 3457999999
Q ss_pred EEeeCCCCeee
Q 024831 162 IDEKPHSLFKR 172 (262)
Q Consensus 162 i~~~~h~~f~R 172 (262)
|++.-......
T Consensus 336 ~~v~~P~~ls~ 346 (380)
T PRK14297 336 VIVDIPKKLNS 346 (380)
T ss_pred EEEEcCCCCCH
Confidence 99986554433
No 64
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=5.9e-08 Score=90.10 Aligned_cols=83 Identities=17% Similarity=0.223 Sum_probs=70.6
Q ss_pred CCCCCCEEEEEecchhhhccCceEEEEeeEEEEeCCCCcccccEEEEEEeCCCCCCCceEEeCccccCC-CCCCCCcEEE
Q 024831 82 LRKAAPIERTLPCSLEDLYKGTTKKMKISRDVIDASGRPNTTEEILTIEIKPGWKKGTKITFPEKGNEL-RNVIPSDLIF 160 (262)
Q Consensus 82 ~~~g~di~~~l~itLee~~~G~~k~i~~~r~~~~~~G~~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~-~~~~~gDlv~ 160 (262)
.|.+.||+++++|++.+|.+|.+.+|... +| .++|+||+|++.|+.++++++|.+. .+...|||+|
T Consensus 260 ~R~g~dL~~~~~Is~~~AalG~~i~vptl------~g-------~~~l~ip~Gtq~G~~~rl~gkG~p~~~~~~~GDl~v 326 (371)
T COG0484 260 ERDGDDLYCEVPISFTEAALGGEIEVPTL------DG-------RVKLKIPAGTQTGEVFRLRGKGMPKLRSGGRGDLYV 326 (371)
T ss_pred EECCCceEeccccCHHHHhcCCEEEEEec------CC-------CEEEecCCCCccCcEEEEcCCCccccCCCCcCCEEE
Confidence 36678999999999999999999998876 55 3999999999999999999999986 5556799999
Q ss_pred EEEeeCCCCeeeeccce
Q 024831 161 IIDEKPHSLFKRDGNDL 177 (262)
Q Consensus 161 ~i~~~~h~~f~R~G~DL 177 (262)
.|++.-...+..+...|
T Consensus 327 ~v~v~~P~~ls~~q~~l 343 (371)
T COG0484 327 RVKVETPKNLSDEQKEL 343 (371)
T ss_pred EEEEEcCCCCCHHHHHH
Confidence 99998777665544443
No 65
>PRK14283 chaperone protein DnaJ; Provisional
Probab=98.60 E-value=1.2e-07 Score=89.28 Aligned_cols=74 Identities=18% Similarity=0.153 Sum_probs=63.3
Q ss_pred CCCCCEEEEEecchhhhccCceEEEEeeEEEEeCCCCcccccEEEEEEeCCCCCCCceEEeCccccCCC-CCCCCcEEEE
Q 024831 83 RKAAPIERTLPCSLEDLYKGTTKKMKISRDVIDASGRPNTTEEILTIEIKPGWKKGTKITFPEKGNELR-NVIPSDLIFI 161 (262)
Q Consensus 83 ~~g~di~~~l~itLee~~~G~~k~i~~~r~~~~~~G~~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~-~~~~gDlv~~ 161 (262)
+++.||++++.|||+||+.|+++.|... +| .++|.||+|+++|++++++|+|.+.. ...+|||+|+
T Consensus 267 r~G~DL~~~~~Isl~eAl~G~~~~i~tl------dG-------~i~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GdL~v~ 333 (378)
T PRK14283 267 REGANLYYEKPISFVQAALGDTVDVPTI------DG-------PVELKIPAGTQSGTTFRLKGHGMPSLRWSGKGNLYVK 333 (378)
T ss_pred EecCCEEEEEecCHHHHhcCCeEEEEcC------Cc-------eEEEEeCCCCCCCCEEEECCCCCCCCCCCCCCCEEEE
Confidence 5688999999999999999999888754 44 68999999999999999999999764 3457999999
Q ss_pred EEeeCCCC
Q 024831 162 IDEKPHSL 169 (262)
Q Consensus 162 i~~~~h~~ 169 (262)
|++.-...
T Consensus 334 ~~v~~P~~ 341 (378)
T PRK14283 334 VKVVVPKK 341 (378)
T ss_pred EEEEeCCC
Confidence 99975443
No 66
>PRK14277 chaperone protein DnaJ; Provisional
Probab=98.59 E-value=1.1e-07 Score=89.68 Aligned_cols=76 Identities=18% Similarity=0.189 Sum_probs=63.9
Q ss_pred CCCCCEEEEEecchhhhccCceEEEEeeEEEEeCCCCcccccEEEEEEeCCCCCCCceEEeCccccCCCC-CCCCcEEEE
Q 024831 83 RKAAPIERTLPCSLEDLYKGTTKKMKISRDVIDASGRPNTTEEILTIEIKPGWKKGTKITFPEKGNELRN-VIPSDLIFI 161 (262)
Q Consensus 83 ~~g~di~~~l~itLee~~~G~~k~i~~~r~~~~~~G~~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~-~~~gDlv~~ 161 (262)
+++.||+++++|||.||+.|++++|... +| .++|.||+++++|++++++++|.+..+ ...|||+|+
T Consensus 276 R~G~DL~~~~~Isl~eAl~G~~~~i~tl------dG-------~~~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~v~ 342 (386)
T PRK14277 276 REGYNVYLEMPITFTDAALGGEIEIPTL------DG-------KVKFTIPEGTQTGTKFRLRGKGIPHLRGRGRGDQIVK 342 (386)
T ss_pred EecCCEEEEEEcCHHHHhCCCEEEEEcC------CC-------CEEEEECCCCCCCCEEEECCCCCCCCCCCCCCCEEEE
Confidence 5688999999999999999999888665 55 379999999999999999999987643 357999999
Q ss_pred EEeeCCCCee
Q 024831 162 IDEKPHSLFK 171 (262)
Q Consensus 162 i~~~~h~~f~ 171 (262)
|++.-.....
T Consensus 343 ~~V~~P~~Ls 352 (386)
T PRK14277 343 VYIEVPKKLT 352 (386)
T ss_pred EEEEeCCCCC
Confidence 9997554433
No 67
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=98.55 E-value=2.6e-07 Score=87.97 Aligned_cols=74 Identities=19% Similarity=0.159 Sum_probs=64.2
Q ss_pred CCCCCCEEEEEecchhhhccCceEEEEeeEEEEeCCCCcccccEEEEEEeCCC--CCCCceEEeCccccCCCC--CCCCc
Q 024831 82 LRKAAPIERTLPCSLEDLYKGTTKKMKISRDVIDASGRPNTTEEILTIEIKPG--WKKGTKITFPEKGNELRN--VIPSD 157 (262)
Q Consensus 82 ~~~g~di~~~l~itLee~~~G~~k~i~~~r~~~~~~G~~~~~~~~l~V~Ip~G--~~~G~~i~~~g~G~~~~~--~~~gD 157 (262)
.+++.||+++++|||.||++|.+++|... +|+ .++|+||+| +++|++++++|+|.+..+ ...||
T Consensus 270 ~R~G~DL~~~~~Isl~eAllG~~i~I~tL------dG~------~l~I~ip~g~vt~pg~~~~I~geGmP~~~~~~~rGD 337 (421)
T PTZ00037 270 KREGGDLFITKKISLYEALTGFVFYITHL------DGR------KLLVNTPPGEVVKPGDIKVINNEGMPTYKSPFKKGN 337 (421)
T ss_pred EEeCCeEEEEEeCCHHHHhcCCEEEeeCC------CCC------eEEEEeCCCcccCCCcEEEeCCCCcccCCCCCCCCC
Confidence 46689999999999999999999888765 663 689999999 999999999999998643 35799
Q ss_pred EEEEEEeeCC
Q 024831 158 LIFIIDEKPH 167 (262)
Q Consensus 158 lv~~i~~~~h 167 (262)
|+|+|++.-.
T Consensus 338 L~V~~~V~~P 347 (421)
T PTZ00037 338 LYVTFEVIFP 347 (421)
T ss_pred EEEEEEEEcC
Confidence 9999999755
No 68
>PRK14296 chaperone protein DnaJ; Provisional
Probab=98.54 E-value=1.8e-07 Score=87.84 Aligned_cols=75 Identities=17% Similarity=0.107 Sum_probs=63.5
Q ss_pred CCCEEEEEecchhhhccCceEEEEeeEEEEeCCCCcccccEEEEEEeCCCCCCCceEEeCccccCCC--CCCCCcEEEEE
Q 024831 85 AAPIERTLPCSLEDLYKGTTKKMKISRDVIDASGRPNTTEEILTIEIKPGWKKGTKITFPEKGNELR--NVIPSDLIFII 162 (262)
Q Consensus 85 g~di~~~l~itLee~~~G~~k~i~~~r~~~~~~G~~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~--~~~~gDlv~~i 162 (262)
+.||+++++|||.||+.|++++|... +| .++|+||+++++|++++++|+|.+.. ....|||+|+|
T Consensus 273 G~DL~~~~~Isl~eAllG~~~~i~tl------dG-------~~~v~ip~~t~~g~~~ri~GkGmP~~~~~~~~GDL~V~~ 339 (372)
T PRK14296 273 NNDILMTYNISYLDAILGNEIIIKTL------DG-------DIKYKLPKSINSNELIIINNKGLYKSINKDKRGDLIIKV 339 (372)
T ss_pred CCcEEEEEecCHHHHhCCCEEEeeCC------CC-------CEEEEECCccCCCcEEEEcCCCCCcCCCCCCcCCEEEEE
Confidence 68999999999999999999988765 56 38999999999999999999998742 23579999999
Q ss_pred EeeCCCCeee
Q 024831 163 DEKPHSLFKR 172 (262)
Q Consensus 163 ~~~~h~~f~R 172 (262)
++.-......
T Consensus 340 ~V~~P~~Ls~ 349 (372)
T PRK14296 340 NIVVPKNLSK 349 (372)
T ss_pred EEECCCCCCH
Confidence 9986654443
No 69
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=3.3e-07 Score=83.17 Aligned_cols=96 Identities=18% Similarity=0.300 Sum_probs=78.7
Q ss_pred CCCEEEEEecchhhhccCceEEEEeeEEEEeCC---------------------C----------------------C--
Q 024831 85 AAPIERTLPCSLEDLYKGTTKKMKISRDVIDAS---------------------G----------------------R-- 119 (262)
Q Consensus 85 g~di~~~l~itLee~~~G~~k~i~~~r~~~~~~---------------------G----------------------~-- 119 (262)
+.++++.+.++|+||..|+.+.+.+.....|.+ | .
T Consensus 137 ~~~~~~d~~~~f~~A~~g~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~c~~~~~~~ 216 (288)
T KOG0715|consen 137 DKDQYYDLSLDFKEAVRGSKKRISFNVLSDCETCFGSGAEEGAKRESCKTCSGRGLVSNPKEDPFILYTCSYCLGRGLVL 216 (288)
T ss_pred CcccccccccCHHHHhhccccceEEEeecccccccCcCcccccccccchhhhCcccccccccCCcceeecccccccceec
Confidence 346677788888888888887887777665521 1 0
Q ss_pred -----------cccccEEEEEEeCCCCCCCceEEeCccccCCCCCCCCcEEEEEEeeCCCCeeeeccceEEEEEecHHH
Q 024831 120 -----------PNTTEEILTIEIKPGWKKGTKITFPEKGNELRNVIPSDLIFIIDEKPHSLFKRDGNDLVVTQKISLVE 187 (262)
Q Consensus 120 -----------~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~gDlv~~i~~~~h~~f~R~G~DL~~~~~I~l~~ 187 (262)
.+...+.+.|.+|+|+.++.+|++.+.+.. ||.+.+.|.+++.|+|+++|+++.+.|++.+
T Consensus 217 ~~~c~~~~g~~~v~~~k~i~i~~~~g~~~~~~l~~~~~~~~-------~l~v~~~v~~~~~~~r~~~~i~~~~~i~~~~ 288 (288)
T KOG0715|consen 217 RDNCQACSGAGQVRRAKDIMIVLPAGVRSADTLRFAGHGND-------DLFVRLIVAKSPSFRREGKDILYDAIISFTQ 288 (288)
T ss_pred cchHHHhhcchhhhhheeEEeecCcccccccEEEEecCCcc-------eEEEEEEeccCcccccccCcccccccccccC
Confidence 355678899999999999999999998753 9999999999999999999999999998753
No 70
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=98.41 E-value=7.8e-07 Score=88.62 Aligned_cols=72 Identities=14% Similarity=0.104 Sum_probs=63.2
Q ss_pred CCCCCCEEEEEecchhhhccCceEEEEeeEEEEeCCCCcccccEEEEEEeCCCCCCCceEEeCccccCCCCCCCCcEEEE
Q 024831 82 LRKAAPIERTLPCSLEDLYKGTTKKMKISRDVIDASGRPNTTEEILTIEIKPGWKKGTKITFPEKGNELRNVIPSDLIFI 161 (262)
Q Consensus 82 ~~~g~di~~~l~itLee~~~G~~k~i~~~r~~~~~~G~~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~gDlv~~ 161 (262)
.|++.||++++.|||.+|++|++++|... +| .++|.||+|+++|++++++|+|.+..+..+|||+|+
T Consensus 742 rRdGdDL~~~v~ISL~EALLGgtIeIpTL------DG-------rVkLkIPpgTqpGqvLRIkGKGMP~~~~~RGDLyV~ 808 (871)
T TIGR03835 742 QIKNDGLHVAALVDPLVAYNGGIIDVFGP------NK-------LFNVRIPGGIKVNDQVIFKDLGLTKTKYDKGSLIVH 808 (871)
T ss_pred EEECCeEEEEEecCHHHHhcCCEEEeeCC------CC-------CEEEeeCCCCCCCcEEEECCCCCCCCCCCCCCEEEE
Confidence 46799999999999999999999988765 45 489999999999999999999997544458999999
Q ss_pred EEeeC
Q 024831 162 IDEKP 166 (262)
Q Consensus 162 i~~~~ 166 (262)
|.+..
T Consensus 809 f~V~~ 813 (871)
T TIGR03835 809 LYYSS 813 (871)
T ss_pred EEEee
Confidence 99864
No 71
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.0017 Score=60.00 Aligned_cols=74 Identities=23% Similarity=0.305 Sum_probs=63.7
Q ss_pred CCCCCEEEEEecchhhhccCceEEEEeeEEEEeCCCCcccccEEEEEEeCCC--CCCCceEEeCccccCCCCCCCCcEEE
Q 024831 83 RKAAPIERTLPCSLEDLYKGTTKKMKISRDVIDASGRPNTTEEILTIEIKPG--WKKGTKITFPEKGNELRNVIPSDLIF 160 (262)
Q Consensus 83 ~~g~di~~~l~itLee~~~G~~k~i~~~r~~~~~~G~~~~~~~~l~V~Ip~G--~~~G~~i~~~g~G~~~~~~~~gDlv~ 160 (262)
+++.|+.++++|+|.||..|-.+.+... +|+ .+++.++|| +++|++++++++|++......|||||
T Consensus 249 Rrg~dL~~~~~i~l~eal~G~~~~~~~l------dGr------~l~~~~~pg~vi~~~~~~~v~~~gmp~~~~~~g~lyi 316 (337)
T KOG0712|consen 249 RRGSDLYRKLTISLVEALCGFQRVWETL------DGR------LLKLSSKPGEVISPGDTKRVEGEGMPIFRNPKGDLYI 316 (337)
T ss_pred ecccccceeeecchhhccccceEEEEcc------CCc------eEEEecCCCceeChhHEEeecCCCcccccCCCCcEEE
Confidence 5578999999999999999988877722 664 899999999 99999999999999886555999999
Q ss_pred EEEeeCCC
Q 024831 161 IIDEKPHS 168 (262)
Q Consensus 161 ~i~~~~h~ 168 (262)
.++|+-.+
T Consensus 317 ~~~v~fp~ 324 (337)
T KOG0712|consen 317 KFEVKFPK 324 (337)
T ss_pred EEEEEcCC
Confidence 99997554
No 72
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=90.29 E-value=0.87 Score=38.03 Aligned_cols=78 Identities=19% Similarity=0.185 Sum_probs=68.0
Q ss_pred CEEEEEecchhhhccCceEEEEeeEEEEeCCCCcccccEEEEEEeCCCCCCCceEEeCccccCCCCCCCCcEEEEEEeeC
Q 024831 87 PIERTLPCSLEDLYKGTTKKMKISRDVIDASGRPNTTEEILTIEIKPGWKKGTKITFPEKGNELRNVIPSDLIFIIDEKP 166 (262)
Q Consensus 87 di~~~l~itLee~~~G~~k~i~~~r~~~~~~G~~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~gDlv~~i~~~~ 166 (262)
++..++.+++.+++.+..+.+.+.. .....+.++.++..+..+++.+++.... ...++.+..+..++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 216 (237)
T COG2214 150 DLAANLADNFEEALAGVKKAVARLL------------GKALKSTIKAGALEGKALRLKGLLKSAR-GALGKARLKELSKR 216 (237)
T ss_pred ceeeeeeccHHHHhcCcceeeeccc------------cccccccCCcccccCceeeecccCCcCC-CCcccceeeeeccC
Confidence 7899999999999999888887652 1234489999999999999999987767 67899999999999
Q ss_pred CCCeeeeccce
Q 024831 167 HSLFKRDGNDL 177 (262)
Q Consensus 167 h~~f~R~G~DL 177 (262)
|+.|..+++++
T Consensus 217 ~~~~~~~~~~~ 227 (237)
T COG2214 217 HPPFALEGDDK 227 (237)
T ss_pred CCCccccCCcc
Confidence 99999999999
No 73
>PF12991 DUF3875: Domain of unknown function, B. Theta Gene description (DUF3875); InterPro: IPR024451 This domain of unknown function is found in proteins from Bacteroidetes, including the conjugation system ATPase, TraG.
Probab=63.92 E-value=8.6 Score=26.01 Aligned_cols=25 Identities=20% Similarity=0.635 Sum_probs=20.1
Q ss_pred CCCCEEEEEEEeCCC--CCCHHHHHHH
Q 024831 233 KRGNLRIKFNIKFPS--KLTTEQKSGL 257 (262)
Q Consensus 233 ~rGDL~V~~~V~~P~--~ls~~qk~~l 257 (262)
+.||+.|-|+|.+|+ .||.++-+.|
T Consensus 26 k~gDiTv~f~v~LPEiFtls~~eYea~ 52 (54)
T PF12991_consen 26 KNGDITVAFRVELPEIFTLSEAEYEAI 52 (54)
T ss_pred cCCCEEEEEEecCCeeEEechhHhHHh
Confidence 459999999999999 5777766554
No 74
>cd02639 R3H_RRM R3H domain of mainly fungal proteins which are associated with a RNA recognition motif (RRM) domain. Present in this group is the RNA-binding post-transcriptional regulator Cip2 (Csx1-interacting protein 2) involved in counteracting Csx1 function. Csx1 plays a central role in controlling gene expression during oxidative stress. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=49.97 E-value=21 Score=24.72 Aligned_cols=21 Identities=24% Similarity=0.444 Sum_probs=17.9
Q ss_pred EEEEeCCCCCCHHHHHHHHhh
Q 024831 240 KFNIKFPSKLTTEQKSGLKRL 260 (262)
Q Consensus 240 ~~~V~~P~~ls~~qk~~l~~~ 260 (262)
..+..||.+||++||..+..+
T Consensus 17 ~~eL~Fp~~ls~~eRriih~l 37 (60)
T cd02639 17 RDELAFPSSLSPAERRIVHLL 37 (60)
T ss_pred ceEEEcCCCCCHHHHHHHHHH
Confidence 567899999999999988654
No 75
>PF12791 RsgI_N: Anti-sigma factor N-terminus; InterPro: IPR024449 The heat shock genes in Bacillus subtilis can be classified into several groups according to their regulation [], and the sigma gene, sigI, of Bacillus subtilis belongs to the group IV heat-shock response genes and has many orthologues in the bacterial phylum Firmicutes []. Regulation of sigma factor I is carried out by RsgI from the same operon. This entry represents the N-terminal cytoplasmic portion of RsgI ('upstream' of the single transmembrane helix) which has been shown to interact directly with Sigma-I [].
Probab=38.91 E-value=80 Score=20.86 Aligned_cols=37 Identities=11% Similarity=0.032 Sum_probs=29.7
Q ss_pred CCCEEEEecCCCcEEEEeeCCccCCCcEEEEcCCCCC
Q 024831 190 TGYTVQLTTLDGRTLTVPINSVISPTYEEVIKGEGMP 226 (262)
Q Consensus 190 ~G~~i~i~tldG~~l~v~i~~~~~~g~~~~i~g~GmP 226 (262)
.+....|-|.||+-++|+.++..+-|+.+.+.-+-..
T Consensus 4 ~~~~aiVlT~dGeF~~ik~~~~~~vG~eI~~~~~~~~ 40 (56)
T PF12791_consen 4 KKKYAIVLTPDGEFIKIKRKPGMEVGQEIEFDEKDII 40 (56)
T ss_pred cCCEEEEEcCCCcEEEEeCCCCCcccCEEEEechhhc
Confidence 3556789999999999999877888999888765443
No 76
>PF02736 Myosin_N: Myosin N-terminal SH3-like domain; InterPro: IPR004009 This domain has an SH3-like fold. It is found at the N terminus of many but not all myosins. The function of this domain is unknown.; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 2EC6_A 2W4H_M 1O1E_P 1O1D_D 1O18_A 1O1C_P 1O1B_D 1O1F_A 2W4A_M 2W4G_M ....
Probab=38.30 E-value=87 Score=19.68 Aligned_cols=35 Identities=29% Similarity=0.346 Sum_probs=25.8
Q ss_pred eeeeccceEEEEEecHHHHhCCCEEEEecCCCcEEEEe
Q 024831 170 FKRDGNDLVVTQKISLVEALTGYTVQLTTLDGRTLTVP 207 (262)
Q Consensus 170 f~R~G~DL~~~~~I~l~~Al~G~~i~i~tldG~~l~v~ 207 (262)
|-.+..+-+....|. ...|..+.|.+.||+.++|+
T Consensus 5 WvpD~~egfv~g~I~---~~~g~~vtV~~~~G~~~tv~ 39 (42)
T PF02736_consen 5 WVPDPKEGFVKGEII---EEEGDKVTVKTEDGKEVTVK 39 (42)
T ss_dssp EEEESSSSEEEEEEE---EEESSEEEEEETTTEEEEEE
T ss_pred EEeCCcccEEEEEEE---EEcCCEEEEEECCCCEEEeC
Confidence 344556666666765 66888999999999877765
No 77
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=32.54 E-value=1.4e+02 Score=24.32 Aligned_cols=69 Identities=23% Similarity=0.163 Sum_probs=57.6
Q ss_pred ceEEEEEecHHHHhCCCEEEEecCCCcEEEEeeCCccCCCcEEEEcCCCCCCCCCCCCCCCEEEEEEEeCCC
Q 024831 176 DLVVTQKISLVEALTGYTVQLTTLDGRTLTVPINSVISPTYEEVIKGEGMPIPKEPSKRGNLRIKFNIKFPS 247 (262)
Q Consensus 176 DL~~~~~I~l~~Al~G~~i~i~tldG~~l~v~i~~~~~~g~~~~i~g~GmP~~~~~~~rGDL~V~~~V~~P~ 247 (262)
++...+.++..+++.+....+.-.......+.++.....+..+++.+++.... ...++++.++.+....
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 218 (237)
T COG2214 150 DLAANLADNFEEALAGVKKAVARLLGKALKSTIKAGALEGKALRLKGLLKSAR---GALGKARLKELSKRHP 218 (237)
T ss_pred ceeeeeeccHHHHhcCcceeeeccccccccccCCcccccCceeeecccCCcCC---CCcccceeeeeccCCC
Confidence 77888999999999999888888877755678999999999999999998754 5678999988877544
No 78
>cd03577 NTR_TIMP_like NTR domain, TIMP-like subfamily; TIMPs, or tissue inibitors of metalloproteases, are essential regulators of extracellular matrix turnover and remodeling. They form complexes with matrix metalloproteases (MMPs) and inactivate them irreversibly by non-covalently binding their active zinc-binding sites. This group contains domains similar to the TIMP NTR domain, which binds MMPs. Members of this group may or may not function as MMP inhibitors.
Probab=31.29 E-value=2e+02 Score=21.80 Aligned_cols=93 Identities=24% Similarity=0.241 Sum_probs=51.0
Q ss_pred CCCCcEEEEEEeeCCCCeeeeccceEEEEEecHHHHhCCC-----EEEEecCCCcEEEEeeCCccCCCcEEEEcCCCCCC
Q 024831 153 VIPSDLIFIIDEKPHSLFKRDGNDLVVTQKISLVEALTGY-----TVQLTTLDGRTLTVPINSVISPTYEEVIKGEGMPI 227 (262)
Q Consensus 153 ~~~gDlv~~i~~~~h~~f~R~G~DL~~~~~I~l~~Al~G~-----~i~i~tldG~~l~v~i~~~~~~g~~~~i~g~GmP~ 227 (262)
....|.+|+.++..-..-. ...++.+++.| .+.+-|. .+.|-|.... ..-.++... +....|-|.-.
T Consensus 12 fC~sD~Vi~~kV~~~~~~~-~~~~~~~~~~v--~~v~K~~~~~~~~~~v~t~~~~-~~Cg~~~~~--~~~YLI~G~~~-- 83 (116)
T cd03577 12 YCQADFVIKVKVLKKKLDG-AGLNIRYTIEI--KKVYKGSEKSLLPITIYTPSDD-SACGIPLLE--GKEYLIAGKVE-- 83 (116)
T ss_pred hccCCEEEEEEEeceeeec-CCCeEEEEEEE--EEEecCCccCCCceEEEecCcc-cCcCcCcCC--CCEEEEEEEcC--
Confidence 3568888888886542110 11444444444 3444333 2444443321 122233222 67777777521
Q ss_pred CCCCCCCCCEEEE---EEEeCCCCCCHHHHHHHHhh
Q 024831 228 PKEPSKRGNLRIK---FNIKFPSKLTTEQKSGLKRL 260 (262)
Q Consensus 228 ~~~~~~rGDL~V~---~~V~~P~~ls~~qk~~l~~~ 260 (262)
.|.|++. +.... ++||.+||..|+.+
T Consensus 84 ------~~~l~~~~Cs~v~~W-~~ls~~qkr~l~~~ 112 (116)
T cd03577 84 ------DGALHTTLCDGVAPW-DDLTKEQKRGLKGL 112 (116)
T ss_pred ------CCcEEEEeCCCEEEh-HHCCHHHHhhhhhc
Confidence 2889988 65544 56999999998864
No 79
>cd06007 R3H_DEXH_helicase R3H domain of a group of proteins which also contain a DEXH-box helicase domain, and may function as ATP-dependent DNA or RNA helicases. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=30.50 E-value=59 Score=22.31 Aligned_cols=20 Identities=35% Similarity=0.602 Sum_probs=17.2
Q ss_pred EEEeCCCCCCHHHHHHHHhh
Q 024831 241 FNIKFPSKLTTEQKSGLKRL 260 (262)
Q Consensus 241 ~~V~~P~~ls~~qk~~l~~~ 260 (262)
-+..||..||+.+|..+-++
T Consensus 17 ~~l~Fpp~ls~~eR~~vH~~ 36 (59)
T cd06007 17 EEYEFPSSLTNHERAVIHRL 36 (59)
T ss_pred cEEEcCCCCCHHHHHHHHHH
Confidence 56789999999999998764
No 80
>COG1470 Predicted membrane protein [Function unknown]
Probab=29.78 E-value=5.5e+02 Score=25.29 Aligned_cols=97 Identities=25% Similarity=0.292 Sum_probs=63.3
Q ss_pred CCCEEEEEecchhhhccCceEEEEeeEEEEeCCCCcccccEEEEEEeCCCCCCCc-eEEeCccccCCCCCCCCcEEEEEE
Q 024831 85 AAPIERTLPCSLEDLYKGTTKKMKISRDVIDASGRPNTTEEILTIEIKPGWKKGT-KITFPEKGNELRNVIPSDLIFIID 163 (262)
Q Consensus 85 g~di~~~l~itLee~~~G~~k~i~~~r~~~~~~G~~~~~~~~l~V~Ip~G~~~G~-~i~~~g~G~~~~~~~~gDlv~~i~ 163 (262)
...+.+++.+|++-+ .|...++-+.-..+.+---.-.+...++..|-|+ +.|. .++|.-+|.+ ++.+.
T Consensus 8 ~~~~~~~~~ls~~~~-~~~d~~f~y~g~~i~~~~lr~~e~~~l~~~v~~~-~~g~~~v~f~i~~~~---------~~~v~ 76 (513)
T COG1470 8 NGTILVTVLLSLMSL-KGADVKFLYQGIEIKGLKLRPKESVELQFKVLPG-KAGSYSVKFSIEGVP---------YWTVN 76 (513)
T ss_pred CCcEEEEEEEEehhc-CCccEEEEEeeeEeeeeEcCCCcceEEEEEEecC-CCCcEEEEEEECCce---------eEEEE
Confidence 346788899999988 8888777666443321100123456788888888 5554 5667765542 35555
Q ss_pred eeCCCCeeeeccceEEEEEecHHHHhCCCEEEEecC
Q 024831 164 EKPHSLFKRDGNDLVVTQKISLVEALTGYTVQLTTL 199 (262)
Q Consensus 164 ~~~h~~f~R~G~DL~~~~~I~l~~Al~G~~i~i~tl 199 (262)
+.. ..-|..++++.-.+|-.|.+++|+-+
T Consensus 77 v~~-------~~~l~it~p~~~~~~e~g~~v~~~~~ 105 (513)
T COG1470 77 VYT-------SEPLQITLPIEAQEAEAGLKVRVPEL 105 (513)
T ss_pred EEe-------cccEEEeccchhhhhccccEEEEeeh
Confidence 433 24466788888889999998888754
No 81
>PF11197 DUF2835: Protein of unknown function (DUF2835); InterPro: IPR021363 This is a bacterial family of uncharacterised proteins. One member of this family (A4VM42 from SWISSPROT) is annotated as the A subunit of Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV).
Probab=29.34 E-value=1.5e+02 Score=21.04 Aligned_cols=31 Identities=32% Similarity=0.428 Sum_probs=23.0
Q ss_pred EEEEEecHHHHh---CCC--EEEEecCCCcEEEEee
Q 024831 178 VVTQKISLVEAL---TGY--TVQLTTLDGRTLTVPI 208 (262)
Q Consensus 178 ~~~~~I~l~~Al---~G~--~i~i~tldG~~l~v~i 208 (262)
+..+.||..+.| .|. +|.|.+.||++|.++.
T Consensus 2 ~f~l~is~~~~l~~Y~G~a~~V~v~s~~Gr~v~~Pa 37 (68)
T PF11197_consen 2 YFSLNISYQEFLAYYQGAASKVVVRSDDGRRVQFPA 37 (68)
T ss_pred EEEEEcCHHHHHHhccccccEEEEEecCCcEEEEeH
Confidence 457788888777 353 6899999999766653
No 82
>PF03803 Scramblase: Scramblase ; InterPro: IPR005552 Scramblase is palmitoylated and contains a potential protein kinase C phosphorylation site. Scramblase exhibits Ca2+-activated phospholipid scrambling activity in vitro. There are also possible SH3 and WW binding motifs. Scramblase is involved in the redistribution of phospholipids after cell activation or injury [].
Probab=27.26 E-value=59 Score=27.77 Aligned_cols=20 Identities=45% Similarity=0.624 Sum_probs=17.3
Q ss_pred EEEEeCCCCCCHHHHHHHHh
Q 024831 240 KFNIKFPSKLTTEQKSGLKR 259 (262)
Q Consensus 240 ~~~V~~P~~ls~~qk~~l~~ 259 (262)
.|.|.||..|+.++|++|-.
T Consensus 190 ~f~i~Fp~~l~~~~Kalll~ 209 (221)
T PF03803_consen 190 NFVIEFPPDLDVEQKALLLG 209 (221)
T ss_pred eEEEEcCCCCCHHHHHHHHH
Confidence 47788999999999999864
No 83
>KOG0621 consensus Phospholipid scramblase [Cell wall/membrane/envelope biogenesis]
Probab=26.92 E-value=5e+02 Score=23.80 Aligned_cols=107 Identities=16% Similarity=0.106 Sum_probs=56.9
Q ss_pred ccEEEEEEeCCCCCCCceEEeCccccCCCCCCCCcEEEEEEeeC-CCCeeeeccceEEEEEecHHHHhCCCEEEEecCCC
Q 024831 123 TEEILTIEIKPGWKKGTKITFPEKGNELRNVIPSDLIFIIDEKP-HSLFKRDGNDLVVTQKISLVEALTGYTVQLTTLDG 201 (262)
Q Consensus 123 ~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~gDlv~~i~~~~-h~~f~R~G~DL~~~~~I~l~~Al~G~~i~i~tldG 201 (262)
..+.++|..|++..-|..+...+.-++ .+.|.... ...|.++|-+.....-++ +....+.|.|+
T Consensus 162 ~~~~~~v~~p~~~~lG~v~q~~~~~~~---------~f~i~~~~~~~v~~v~gp~~~~~~~~~------d~~f~~~~~d~ 226 (292)
T KOG0621|consen 162 LAQEIEIQSPPMGLLGKVLQTWGCVNP---------NFHLWDRDGNLVFLVEGPRCCTFACCD------DTVFFPKTTDN 226 (292)
T ss_pred cccEEEEEcCCCceEEEEEEeeccccc---------eEEEEcccceeEEEEEcCceeEEEeec------CcceeEEEcCC
Confidence 356778888888888876666654432 33333321 222445554333333332 22346777776
Q ss_pred cEEEEeeCCccCCCcEEEEcCCCCCCCCCCCCCCCEEEEEEEeCCCCCCHHHHHHHHh
Q 024831 202 RTLTVPINSVISPTYEEVIKGEGMPIPKEPSKRGNLRIKFNIKFPSKLTTEQKSGLKR 259 (262)
Q Consensus 202 ~~l~v~i~~~~~~g~~~~i~g~GmP~~~~~~~rGDL~V~~~V~~P~~ls~~qk~~l~~ 259 (262)
-.+..+|..- -. |+.... -....+ |.|.||.+|+.+.|.+|..
T Consensus 227 ~~~vg~I~k~--------w~--g~~rE~-fTDad~----f~v~FPldLdvk~kavllg 269 (292)
T KOG0621|consen 227 GRIVGSISRK--------WA--GLVREA-FTDADT----FVVHFPLDLDVKLKALLLG 269 (292)
T ss_pred CeEEEEEeec--------cc--chhhhh-eeccce----eeEecCCcCCHHHHhhhhh
Confidence 5455555421 11 111000 001112 7899999999999998854
No 84
>cd02641 R3H_Smubp-2_like R3H domain of Smubp-2_like proteins. Smubp-2_like proteins also contain a helicase_like and an AN1-like Zinc finger domain and have been shown to bind single-stranded DNA. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA.
Probab=26.33 E-value=71 Score=21.85 Aligned_cols=20 Identities=20% Similarity=0.486 Sum_probs=17.0
Q ss_pred EEEeCCCCCCHHHHHHHHhh
Q 024831 241 FNIKFPSKLTTEQKSGLKRL 260 (262)
Q Consensus 241 ~~V~~P~~ls~~qk~~l~~~ 260 (262)
-.+.||.+||+.||..+-++
T Consensus 18 ~~l~F~p~ls~~eR~~vH~l 37 (60)
T cd02641 18 TELEFPPTLSSHDRLLVHEL 37 (60)
T ss_pred CcEECCCCCCHHHHHHHHHH
Confidence 35789999999999998765
No 85
>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown]
Probab=25.64 E-value=3.1e+02 Score=23.69 Aligned_cols=66 Identities=21% Similarity=0.162 Sum_probs=50.9
Q ss_pred CeeeeccceEEEEEecHHHHhCCCEEEEecCCCcEEEEeeCCccCCCcEEEEcCCCCCCCCCCCCCCCEEEEE
Q 024831 169 LFKRDGNDLVVTQKISLVEALTGYTVQLTTLDGRTLTVPINSVISPTYEEVIKGEGMPIPKEPSKRGNLRIKF 241 (262)
Q Consensus 169 ~f~R~G~DL~~~~~I~l~~Al~G~~i~i~tldG~~l~v~i~~~~~~g~~~~i~g~GmP~~~~~~~rGDL~V~~ 241 (262)
.| |--.||.+++-++=.|-+-|++..|....|. .+|++|+ |+.+..++.=+-.- +|-.||-=+-.|
T Consensus 111 ~~-~lrtdls~tlfl~DPedYdGGeLVv~dtYg~-h~VklPA----GdLVlypStSlH~V-tPVTRg~R~asf 176 (229)
T COG3128 111 GF-RLRTDLSCTLFLSDPEDYDGGELVVNDTYGN-HRVKLPA----GDLVLYPSTSLHEV-TPVTRGERFASF 176 (229)
T ss_pred Cc-eeEeeeeeeeecCCccccCCceEEEeccccc-eEEeccC----CCEEEcccccceec-cccccCceEEEe
Confidence 34 6668899998888889999999999999995 8999998 78888888766432 355667655444
No 86
>cd02640 R3H_NRF R3H domain of the NF-kappaB-repression factor (NRF). NRF is a nuclear inhibitor of NF-kappaB proteins that can silence the IFNbeta promoter via binding to a negative regulatory element (NRE). Beside R3H NRF also contains a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=25.52 E-value=80 Score=21.71 Aligned_cols=20 Identities=10% Similarity=0.414 Sum_probs=17.2
Q ss_pred EEEeCCCCCCHHHHHHHHhh
Q 024831 241 FNIKFPSKLTTEQKSGLKRL 260 (262)
Q Consensus 241 ~~V~~P~~ls~~qk~~l~~~ 260 (262)
-++.||..||+.+|..+-++
T Consensus 18 ~~l~f~p~lt~~eR~~vH~~ 37 (60)
T cd02640 18 RDMVFSPEFSKEERALIHQI 37 (60)
T ss_pred ceEEcCCCCCHHHHHHHHHH
Confidence 56889999999999998765
No 87
>TIGR00013 taut 4-oxalocrotonate tautomerase family enzyme. 4-oxalocrotonate tautomerase is a homohexamer in which each monomer is very small, at about 62 amino acids. Pro-1 of the mature protein serves as a general base. The enzyme functions in meta-cleavage pathways of aromatic hydrocarbon catabolism. Because several Arg residues located near the active site in the crystal structure of Pseudomonas putida are not conserved among all members of this family, because the literature describes a general role in the isomerization of beta,gamma-unsaturated enones to their alpha,beta-isomers, and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.
Probab=25.19 E-value=89 Score=20.80 Aligned_cols=22 Identities=27% Similarity=0.111 Sum_probs=14.6
Q ss_pred EEEEEEeCCCCCCHHHHHHHHhh
Q 024831 238 RIKFNIKFPSKLTTEQKSGLKRL 260 (262)
Q Consensus 238 ~V~~~V~~P~~ls~~qk~~l~~~ 260 (262)
+|++++. ++..|++||+.|-+.
T Consensus 2 ~i~i~i~-~~grt~eqK~~l~~~ 23 (63)
T TIGR00013 2 FVNIYIL-KEGRTDEQKRQLIEG 23 (63)
T ss_pred EEEEEEC-CCCCCHHHHHHHHHH
Confidence 3455544 366899998887653
No 88
>PF08774 VRR_NUC: VRR-NUC domain; InterPro: IPR014883 This entry contains proteins with the VRR-NUC domain. It is associated with members of the PD-(D/E)XK nuclease superfamily, which include the type III restriction modification enzymes, for example StyLTI: (P40815 from SWISSPROT).; GO: 0016788 hydrolase activity, acting on ester bonds
Probab=23.63 E-value=1.1e+02 Score=22.57 Aligned_cols=24 Identities=25% Similarity=0.437 Sum_probs=20.0
Q ss_pred EEEEEEEeCCC-CCCHHHHHHHHhh
Q 024831 237 LRIKFNIKFPS-KLTTEQKSGLKRL 260 (262)
Q Consensus 237 L~V~~~V~~P~-~ls~~qk~~l~~~ 260 (262)
.+.-++|+.|. +||++|++-|+.+
T Consensus 62 ~~~~iEvK~p~~~ls~~Q~~~~~~l 86 (100)
T PF08774_consen 62 IFLFIEVKGPGDRLSPNQKEWIDKL 86 (100)
T ss_pred EEEEEEEcCCCCCcCHHHHHHHHHH
Confidence 57778899995 7999999988765
No 89
>PF02963 EcoRI: Restriction endonuclease EcoRI; InterPro: IPR004221 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry represents restriction endonucleases EcoRI, which requires magnesium as a cofactor. EcoRI recognises the DNA sequence GAATTC and cleaves after G-1 [].; GO: 0000287 magnesium ion binding, 0003677 DNA binding, 0009036 Type II site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system; PDB: 1ERI_A 1CL8_A 1QRH_A 1QPS_A 1CKQ_A 1QC9_B 1QRI_A 2OXV_A.
Probab=23.39 E-value=27 Score=30.47 Aligned_cols=37 Identities=32% Similarity=0.410 Sum_probs=23.3
Q ss_pred EEEEecCCCcEEEEeeCCcc-CCCcEEEEcCCCCCCCC
Q 024831 193 TVQLTTLDGRTLTVPINSVI-SPTYEEVIKGEGMPIPK 229 (262)
Q Consensus 193 ~i~i~tldG~~l~v~i~~~~-~~g~~~~i~g~GmP~~~ 229 (262)
+++|..+|||.+++.-..++ .-=++++-.+.|||+..
T Consensus 162 ~~~v~rpdgrvv~l~ynsg~lnrldrltaanygmpint 199 (257)
T PF02963_consen 162 TISVTRPDGRVVTLEYNSGMLNRLDRLTAANYGMPINT 199 (257)
T ss_dssp -EEEEETTSEEEEE-TT-TTT--GGGTGGGGTT--SSS
T ss_pred ceeeeCCCCcEEEEEeccchhhHHHHHhhhhcCCccch
Confidence 68999999998888776533 33355666799999865
No 90
>COG5435 Uncharacterized conserved protein [Function unknown]
Probab=21.22 E-value=1.3e+02 Score=24.70 Aligned_cols=30 Identities=27% Similarity=0.521 Sum_probs=26.9
Q ss_pred CCCCCEEEEEEEeCCCCCCHHHHHHHHhhC
Q 024831 232 SKRGNLRIKFNIKFPSKLTTEQKSGLKRLI 261 (262)
Q Consensus 232 ~~rGDL~V~~~V~~P~~ls~~qk~~l~~~l 261 (262)
-.+|+-++.|...-|..++++|++++.+++
T Consensus 107 i~~g~~vLifT~Tt~~~ftp~q~~~~~~~I 136 (147)
T COG5435 107 IERGDTVLIFTLTTPGEFTPSQKKAWEQVI 136 (147)
T ss_pred cccCCeEEEEEecCCCCCCHHHHHHHHHHH
Confidence 368999999999999999999999998864
No 91
>cd02784 MopB_CT_PHLH The MopB_CT_PHLH CD includes a group of related uncharacterized putative hydrogenase-like homologs (PHLH) of molybdopterin binding proteins. This CD is of the PHLH region homologous to the conserved molybdopterin-binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=20.94 E-value=3.7e+02 Score=21.46 Aligned_cols=47 Identities=19% Similarity=0.058 Sum_probs=36.9
Q ss_pred EEEecHHHHh-----CCCEEEEecCCCc-EEEEeeCCccCCCcEEEEcCCCCC
Q 024831 180 TQKISLVEAL-----TGYTVQLTTLDGR-TLTVPINSVISPTYEEVIKGEGMP 226 (262)
Q Consensus 180 ~~~I~l~~Al-----~G~~i~i~tldG~-~l~v~i~~~~~~g~~~~i~g~GmP 226 (262)
.+.|+..+|- .|..|+|.+..|+ .+.+.+.+.+.||.+..-.|.|--
T Consensus 39 ~v~InP~dA~~lGI~dGD~V~V~s~~G~i~~~a~vt~~i~pgvV~i~~G~G~~ 91 (137)
T cd02784 39 AALVSPRTAEALGLLQGDVVRIRRGGRTIELPVWIQPGHAEGVVLLALGYGRT 91 (137)
T ss_pred eEEECHHHHHHcCCCCCCEEEEEeCCeEEEEEEEECCCcCCCEEEEecccCcc
Confidence 3777777776 5778999999997 345567789999998888888763
No 92
>PF01333 Apocytochr_F_C: Apocytochrome F, C-terminal; InterPro: IPR002325 The cytochrome b6f integral membrane protein complex transfers electrons between the two reaction centre complexes of oxygenic photosynthetic membranes, and participates in formation of the transmembrane electrochemical proton gradient by also transferring protons from the stromal to the internal lumen compartment []. The cytochrome b6f complex contains four polypeptides: cytochrome f (285 aa); cytochrome b6 (215 aa); Rieske iron-sulphur protein (179 aa); and subunit IV (160 aa) []. In its structure and functions, the cytochrome b6f complex bears extensive analogy to the cytochrome bc1 complex of mitochondria and photosynthetic purple bacteria; cytochrome f (cyt f) plays a role analogous to that of cytochrome c1, in spite of their different structures [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0015979 photosynthesis, 0031361 integral to thylakoid membrane; PDB: 2E75_C 2E74_C 1VF5_P 2D2C_P 2E76_C 1TU2_B 2ZT9_C 1E2V_A 1CFM_A 1E2W_B ....
Probab=20.16 E-value=1.1e+02 Score=23.98 Aligned_cols=55 Identities=24% Similarity=0.408 Sum_probs=32.5
Q ss_pred CCCEEEEecCCCcEEEEeeCC----ccCCCcEEEEcCCCCCCCCCC--CCCCCEEEEEEEeCCC
Q 024831 190 TGYTVQLTTLDGRTLTVPINS----VISPTYEEVIKGEGMPIPKEP--SKRGNLRIKFNIKFPS 247 (262)
Q Consensus 190 ~G~~i~i~tldG~~l~v~i~~----~~~~g~~~~i~g~GmP~~~~~--~~rGDL~V~~~V~~P~ 247 (262)
-|..++|.|-||+.+.-.||+ .++.|+.+. .|=|...+| +.+|-.=.++..+=|.
T Consensus 22 gg~~vtI~~~dG~~v~~~IP~GpeLiV~eG~~V~---~dqpLT~nPNVGGFGQ~e~EIVLQ~p~ 82 (118)
T PF01333_consen 22 GGYEVTIETSDGETVVETIPAGPELIVSEGQSVK---ADQPLTNNPNVGGFGQGETEIVLQNPN 82 (118)
T ss_dssp SEEEEEEETTTSEEEEEEEESSS-BS--TT-EET---TT-BSB------EEEEEEEEEEE--SH
T ss_pred CCEEEEEECCCCCEEEEecCCCCeEEEcCCCEEe---cCCcccCCCCcCccCcCceEEEeeccc
Confidence 355799999999988888876 566777663 344655555 5667776777777664
Done!