Query 024832
Match_columns 262
No_of_seqs 238 out of 850
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 15:10:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024832.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024832hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dfx_A Trans-acting T-cell-spe 99.7 7.1E-19 2.4E-23 129.0 4.9 58 167-227 4-61 (63)
2 2vut_I AREA, nitrogen regulato 99.7 1.4E-18 4.6E-23 118.7 3.4 42 171-215 2-43 (43)
3 1gnf_A Transcription factor GA 99.7 2.1E-18 7.1E-23 119.4 4.0 44 169-215 3-46 (46)
4 4gat_A Nitrogen regulatory pro 99.7 4.3E-18 1.5E-22 125.9 4.1 53 169-224 8-60 (66)
5 2kae_A GATA-type transcription 99.6 1.3E-17 4.4E-22 125.0 -1.5 50 168-219 6-55 (71)
6 4hc9_A Trans-acting T-cell-spe 99.6 6.4E-16 2.2E-20 125.2 4.8 57 168-227 57-113 (115)
7 4hc9_A Trans-acting T-cell-spe 99.5 8.4E-15 2.9E-19 118.6 5.9 67 169-242 4-70 (115)
8 3ogl_Q JAZ1 incomplete degron 80.6 0.84 2.9E-05 26.4 1.7 16 103-118 5-20 (21)
9 3ogk_Q JAZ1 incomplete degron 73.9 1.2 4E-05 26.1 1.0 17 104-120 1-17 (22)
10 3cw2_K Translation initiation 47.8 6.2 0.00021 32.4 1.2 31 170-203 103-133 (139)
11 1nee_A EIF-2-beta, probable tr 45.1 6.2 0.00021 32.4 0.8 29 171-202 103-131 (138)
12 2d74_B Translation initiation 44.0 6.4 0.00022 32.7 0.8 37 171-217 105-141 (148)
13 1k81_A EIF-2-beta, probable tr 41.8 3.1 0.00011 26.5 -1.2 29 172-203 2-30 (36)
14 1dl6_A Transcription factor II 41.8 17 0.00058 25.2 2.6 34 169-207 10-43 (58)
15 2crw_A ARF GAP 3, ADP-ribosyla 36.3 22 0.00075 29.4 2.9 39 168-210 27-65 (149)
16 1pft_A TFIIB, PFTFIIBN; N-term 35.3 7.2 0.00025 25.8 -0.2 32 170-206 5-36 (50)
17 1twf_L ABC10-alpha, DNA-direct 33.6 8.9 0.0003 27.9 0.0 32 166-204 24-55 (70)
18 2zjr_Z 50S ribosomal protein L 32.8 8.4 0.00029 27.3 -0.2 26 167-203 27-52 (60)
19 2owa_A Arfgap-like finger doma 31.9 20 0.00068 29.3 1.8 38 169-210 35-72 (138)
20 2crr_A Stromal membrane-associ 31.6 22 0.00074 29.0 2.1 37 169-209 28-64 (141)
21 2iqj_A Stromal membrane-associ 31.3 21 0.00071 28.9 1.9 37 169-209 26-62 (134)
22 2yrk_A Zinc finger homeobox pr 30.6 12 0.0004 26.4 0.3 21 188-208 7-27 (55)
23 3h0g_L DNA-directed RNA polyme 29.8 16 0.00055 26.2 0.8 37 167-210 18-54 (63)
24 3dwd_A ADP-ribosylation factor 27.2 37 0.0013 28.1 2.7 37 169-209 37-73 (147)
25 3k7a_M Transcription initiatio 26.1 20 0.00068 32.7 1.0 31 170-204 21-52 (345)
26 4g92_A HAPB protein; transcrip 25.8 45 0.0015 24.1 2.6 26 122-147 37-63 (64)
27 2g2k_A EIF-5, eukaryotic trans 25.7 11 0.00036 32.1 -0.9 29 171-202 97-127 (170)
28 2olm_A Nucleoporin-like protei 25.4 29 0.00098 28.3 1.7 36 170-209 25-60 (140)
29 3v2d_5 50S ribosomal protein L 24.6 13 0.00044 26.3 -0.4 25 168-203 28-52 (60)
30 2p57_A GTPase-activating prote 23.0 24 0.00082 29.1 0.8 38 169-210 36-73 (144)
31 3cng_A Nudix hydrolase; struct 21.8 21 0.00073 28.8 0.3 31 170-202 3-33 (189)
32 3sub_A ADP-ribosylation factor 21.8 39 0.0013 28.5 1.9 37 169-209 21-57 (163)
33 3o47_A ADP-ribosylation factor 21.5 35 0.0012 30.4 1.7 38 169-210 36-73 (329)
34 2cr8_A MDM4 protein; ZF-ranbp 21.1 37 0.0013 23.6 1.3 22 164-187 5-26 (53)
35 2b0o_E UPLC1; arfgap, structur 21.1 53 0.0018 28.5 2.7 38 168-209 40-77 (301)
36 2k1p_A Zinc finger RAN-binding 20.6 40 0.0014 20.7 1.3 25 168-202 4-28 (33)
37 2e9h_A EIF-5, eukaryotic trans 20.0 17 0.00058 30.4 -0.7 31 171-203 104-135 (157)
No 1
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=99.75 E-value=7.1e-19 Score=129.04 Aligned_cols=58 Identities=31% Similarity=0.590 Sum_probs=50.5
Q ss_pred CCCCccceeeccCCCCCCceecCCCCCCccchhhhhHHHhcCCCCCCCcccCCCCCCCccc
Q 024832 167 SPSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGKKMEDQPLTPAEQ 227 (262)
Q Consensus 167 ~~~~~~C~nCgtt~~~TP~WRrGp~G~~~LCNACGl~~~~~g~~Rp~s~~~~~~~~~~~~~ 227 (262)
......|.||+++ .||+||+||+|+ +|||||||||++++++||+++++..+.....+.
T Consensus 4 ~~~~~~C~~C~tt--~Tp~WR~gp~G~-~LCNACGl~~~~~~~~RP~~~~~~~i~~R~Rk~ 61 (63)
T 3dfx_A 4 RRAGTSCANCQTT--TTTLWRRNANGD-PVCNACGLYYKLHNINRPLTMKKEGIQTRNRKM 61 (63)
T ss_dssp CCTTCCCTTTCCS--CCSSCCCCTTSC-CCCHHHHHHHHHHSSCCCGGGCCSSCCCCC---
T ss_pred CCCCCcCCCcCCC--CCCccCCCCCCC-chhhHHHHHHHHcCCCCCcCcCCCccccccCCC
Confidence 4567899999998 999999999997 999999999999999999999988877766543
No 2
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=99.73 E-value=1.4e-18 Score=118.71 Aligned_cols=42 Identities=50% Similarity=0.991 Sum_probs=39.9
Q ss_pred ccceeeccCCCCCCceecCCCCCCccchhhhhHHHhcCCCCCCCc
Q 024832 171 TSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGK 215 (262)
Q Consensus 171 ~~C~nCgtt~~~TP~WRrGp~G~~~LCNACGl~~~~~g~~Rp~s~ 215 (262)
..|++|+++ .||+||+||+|+ +|||||||||++|+++||+++
T Consensus 2 ~~C~~C~tt--~Tp~WR~gp~G~-~LCNaCGl~~k~~~~~RP~~l 43 (43)
T 2vut_I 2 TTCTNCFTQ--TTPLWRRNPEGQ-PLCNACGLFLKLHGVVRPLSL 43 (43)
T ss_dssp CCCSSSCCC--CCSCCEECTTSC-EECHHHHHHHHHHSSCCCCCC
T ss_pred CcCCccCCC--CCCccccCCCCC-cccHHHHHHHHHhCCCCCCCC
Confidence 579999998 999999999997 999999999999999999975
No 3
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=99.72 E-value=2.1e-18 Score=119.35 Aligned_cols=44 Identities=41% Similarity=0.866 Sum_probs=41.2
Q ss_pred CCccceeeccCCCCCCceecCCCCCCccchhhhhHHHhcCCCCCCCc
Q 024832 169 SETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGK 215 (262)
Q Consensus 169 ~~~~C~nCgtt~~~TP~WRrGp~G~~~LCNACGl~~~~~g~~Rp~s~ 215 (262)
....|+||+++ .||+||+||+|+ +|||||||||++++++||+++
T Consensus 3 ~~~~C~~C~tt--~Tp~WR~gp~G~-~LCNaCGl~~k~~~~~RP~~~ 46 (46)
T 1gnf_A 3 EARECVNCGAT--ATPLWRRDRTGH-YLCNACGLYHKMNGQNRPLIR 46 (46)
T ss_dssp CSCCCTTTCCC--CCSSCBCCTTCC-CBCSHHHHHHHHTCSCCCCCC
T ss_pred CCCCCCCcCCC--CCCcCccCCCCC-ccchHHHHHHHHcCCCCCCCC
Confidence 46789999998 999999999996 999999999999999999975
No 4
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=99.71 E-value=4.3e-18 Score=125.93 Aligned_cols=53 Identities=42% Similarity=0.765 Sum_probs=47.8
Q ss_pred CCccceeeccCCCCCCceecCCCCCCccchhhhhHHHhcCCCCCCCcccCCCCCCC
Q 024832 169 SETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGKKMEDQPLTP 224 (262)
Q Consensus 169 ~~~~C~nCgtt~~~TP~WRrGp~G~~~LCNACGl~~~~~g~~Rp~s~~~~~~~~~~ 224 (262)
....|+||+++ .||+||+||+|. +|||||||||++|+++||+++++..|....
T Consensus 8 ~~~~C~~C~t~--~Tp~WR~gp~G~-~LCNaCGl~~~~~~~~RP~~~k~~~ik~R~ 60 (66)
T 4gat_A 8 GPTTCTNCFTQ--TTPLWRRNPEGQ-PLCNACGLFLKLHGVVRPLSLKTDVIKKRN 60 (66)
T ss_dssp SSCCCTTTCCC--CCSSCEEETTTE-EECHHHHHHHHHHCSCCCGGGCCSCCCCCC
T ss_pred CCCCCCCCCCC--CCCcCCcCCCCC-CccHHHHHHHHHcCCCCchhhccccccccc
Confidence 46899999998 999999999996 999999999999999999999886665444
No 5
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=99.63 E-value=1.3e-17 Score=124.96 Aligned_cols=50 Identities=20% Similarity=0.311 Sum_probs=41.7
Q ss_pred CCCccceeeccCCCCCCceecCCCCCCccchhhhhHHHhcCCCCCCCcccCC
Q 024832 168 PSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGKKMED 219 (262)
Q Consensus 168 ~~~~~C~nCgtt~~~TP~WRrGp~G~~~LCNACGl~~~~~g~~Rp~s~~~~~ 219 (262)
.....|+||+++ .||+||+||.+..+|||||||||++++++||+++++.-
T Consensus 6 ~~~~~C~nC~tt--~Tp~WRrg~~~~g~LCNACGl~~~~~~~~RP~~~~~~~ 55 (71)
T 2kae_A 6 KKSFQCSNCSVT--ETIRWRNIRSKEGIQCNACFIYQRKYNKTRPVTAVNKY 55 (71)
T ss_dssp --CCCCSSSCCS--CCSSCCCCSSSSCCCSSHHHHHHHHHHSCCCTHHHHHH
T ss_pred CCCCcCCccCCC--CCCccccCCCCCCccchHHHHHHHHhCCCCCcccchhh
Confidence 456899999998 99999995443349999999999999999999988643
No 6
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=99.59 E-value=6.4e-16 Score=125.22 Aligned_cols=57 Identities=32% Similarity=0.603 Sum_probs=49.8
Q ss_pred CCCccceeeccCCCCCCceecCCCCCCccchhhhhHHHhcCCCCCCCcccCCCCCCCccc
Q 024832 168 PSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGKKMEDQPLTPAEQ 227 (262)
Q Consensus 168 ~~~~~C~nCgtt~~~TP~WRrGp~G~~~LCNACGl~~~~~g~~Rp~s~~~~~~~~~~~~~ 227 (262)
.....|+||+++ .||+||+||+| ++|||||||||++|+++||+++++..|.....+.
T Consensus 57 ~~~~~C~~C~t~--~tp~WRr~~~g-~~lCNaCgl~~~~~~~~rp~~~~~~~i~~r~r~~ 113 (115)
T 4hc9_A 57 RAGTSCANCQTT--TTTLWRRNANG-DPVCNACGLYYKLHNINRPLTMKKEGIQTRNRKM 113 (115)
T ss_dssp CTTCCCTTTCCS--CCSSCEECTTS-CEECHHHHHHHHHHSSCCCGGGCCSSCCCCC---
T ss_pred cccccCCCcCCC--CcceeEECCCC-CCcchHHHHHHHHhCCCCCccccccchhhccccc
Confidence 346899999998 99999999999 7999999999999999999999998887766543
No 7
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=99.52 E-value=8.4e-15 Score=118.65 Aligned_cols=67 Identities=33% Similarity=0.622 Sum_probs=53.5
Q ss_pred CCccceeeccCCCCCCceecCCCCCCccchhhhhHHHhcCCCCCCCcccCCCCCCCcccCCCCCCCCCCcCCCC
Q 024832 169 SETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGKKMEDQPLTPAEQGEGEVNDSDCGTAAH 242 (262)
Q Consensus 169 ~~~~C~nCgtt~~~TP~WRrGp~G~~~LCNACGl~~~~~g~~Rp~s~~~~~~~~~~~~~~~~~~~~s~~~t~~~ 242 (262)
..+.|+||+++ .||+||+||+| .+|||||||||++++++||+.+.+....... .....+++|+|+..
T Consensus 4 ~~~~C~~Cg~~--~Tp~WRr~~~g-~~lCnaCgl~~Kl~G~nRP~~KpKKR~~~~~----~~~~~C~~C~t~~t 70 (115)
T 4hc9_A 4 MGRECVNCGAT--STPLWRRDGTG-HYLCNACGLYHKMNGQNRPLIKPKRRLSAAR----RAGTSCANCQTTTT 70 (115)
T ss_dssp --CCCTTTCCS--CCSSCEECTTS-CEECHHHHHHHHHHSSCCCCSSCCCCCCCCC----CTTCCCTTTCCSCC
T ss_pred CCCCCCCCCCc--cCCcceECCCC-CCcCcchhhhhhhcccccccccccccccccc----cccccCCCcCCCCc
Confidence 46899999998 99999999999 6999999999999999999987664332221 23578999997753
No 8
>3ogl_Q JAZ1 incomplete degron peptide; leucine-rich repeats, ubiquitin ligase, SCF, protein binding; HET: 7JA; 3.18A {Arabidopsis thaliana} PDB: 3ogm_Q*
Probab=80.59 E-value=0.84 Score=26.39 Aligned_cols=16 Identities=63% Similarity=0.887 Sum_probs=14.7
Q ss_pred cHHHHHHHHHhhhhhh
Q 024832 103 QRAASLDRFRQKRKER 118 (262)
Q Consensus 103 ~R~a~l~rfrekrk~r 118 (262)
-|.++|.||-+|||.|
T Consensus 5 aRk~SLqRFleKRk~R 20 (21)
T 3ogl_Q 5 ARRASLHRFLEKRKDR 20 (26)
T ss_pred hHHHHHHHHHHHhhcc
Confidence 5899999999999987
No 9
>3ogk_Q JAZ1 incomplete degron peptide; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana}
Probab=73.90 E-value=1.2 Score=26.08 Aligned_cols=17 Identities=59% Similarity=0.796 Sum_probs=14.4
Q ss_pred HHHHHHHHHhhhhhhcc
Q 024832 104 RAASLDRFRQKRKERCF 120 (262)
Q Consensus 104 R~a~l~rfrekrk~r~f 120 (262)
|.++|.||-||||.|..
T Consensus 1 Rk~SLqRFleKRk~R~~ 17 (22)
T 3ogk_Q 1 RRASLHRFLEKRKDRVT 17 (26)
T ss_pred CchhHHHHHHHHHHHhh
Confidence 56899999999999853
No 10
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=47.81 E-value=6.2 Score=32.39 Aligned_cols=31 Identities=26% Similarity=0.447 Sum_probs=21.1
Q ss_pred CccceeeccCCCCCCceecCCCCCCccchhhhhH
Q 024832 170 ETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLF 203 (262)
Q Consensus 170 ~~~C~nCgtt~~~TP~WRrGp~G~~~LCNACGl~ 203 (262)
=-.|..|+.+ .|-+-+.+..= -.-|+|||-.
T Consensus 103 yVlC~~C~sP--dT~l~k~~r~~-~l~C~ACGa~ 133 (139)
T 3cw2_K 103 YVECSTCKSL--DTILKKEKKSW-YIVCLACGAQ 133 (139)
T ss_dssp CSSCCSSSSS--CCCSCSSCSTT-TSSCCC----
T ss_pred eeECCCCCCc--CcEEEEeCCeE-EEEecCCCCC
Confidence 3689999998 88888865333 4689999963
No 11
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=45.11 E-value=6.2 Score=32.36 Aligned_cols=29 Identities=31% Similarity=0.707 Sum_probs=23.1
Q ss_pred ccceeeccCCCCCCceecCCCCCCccchhhhh
Q 024832 171 TSCTHCGISSKSTPMMRRGPSGPRSLCNACGL 202 (262)
Q Consensus 171 ~~C~nCgtt~~~TP~WRrGp~G~~~LCNACGl 202 (262)
-.|..|+.+ .|-+-+.+..= -.-|+|||-
T Consensus 103 VlC~~C~sP--dT~l~k~~r~~-~l~C~ACGa 131 (138)
T 1nee_A 103 VICHECNRP--DTRIIREGRIS-LLKCEACGA 131 (138)
T ss_dssp HHHTCCSSC--SSCCEEETTTT-EEECSTTSC
T ss_pred EECCCCCCc--CcEEEEcCCeE-EEEccCCCC
Confidence 579999998 89998875333 368999996
No 12
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=44.05 E-value=6.4 Score=32.68 Aligned_cols=37 Identities=24% Similarity=0.523 Sum_probs=26.0
Q ss_pred ccceeeccCCCCCCceecCCCCCCccchhhhhHHHhcCCCCCCCccc
Q 024832 171 TSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGKKM 217 (262)
Q Consensus 171 ~~C~nCgtt~~~TP~WRrGp~G~~~LCNACGl~~~~~g~~Rp~s~~~ 217 (262)
-.|..|+.+ .|-+-+.+..= -.-|+|||- .+++.+.+
T Consensus 105 VlC~~C~sP--dT~L~k~~r~~-~l~C~ACGa-------~~~V~~~k 141 (148)
T 2d74_B 105 VICPVCGSP--DTKIIKRDRFH-FLKCEACGA-------ETPIQHLL 141 (148)
T ss_dssp SSCSSSCCT--TCCCCBSSSSB-CCCCSSSCC-------CCCCCC--
T ss_pred EECCCCCCc--CcEEEEeCCEE-EEEecCCCC-------Cccccchh
Confidence 589999998 88888865333 368999986 44555544
No 13
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=41.80 E-value=3.1 Score=26.53 Aligned_cols=29 Identities=31% Similarity=0.728 Sum_probs=20.7
Q ss_pred cceeeccCCCCCCceecCCCCCCccchhhhhH
Q 024832 172 SCTHCGISSKSTPMMRRGPSGPRSLCNACGLF 203 (262)
Q Consensus 172 ~C~nCgtt~~~TP~WRrGp~G~~~LCNACGl~ 203 (262)
.|..|+.+ .|-+-+++..- -.-|+|||-.
T Consensus 2 lC~~C~~p--eT~l~~~~~~~-~l~C~aCG~~ 30 (36)
T 1k81_A 2 ICRECGKP--DTKIIKEGRVH-LLKCMACGAI 30 (36)
T ss_dssp CCSSSCSC--EEEEEEETTEE-EEEEETTTEE
T ss_pred CCcCCCCC--CcEEEEeCCcE-EEEhhcCCCc
Confidence 58899998 88888864222 2459999964
No 14
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=41.78 E-value=17 Score=25.21 Aligned_cols=34 Identities=18% Similarity=0.500 Sum_probs=23.9
Q ss_pred CCccceeeccCCCCCCceecCCCCCCccchhhhhHHHhc
Q 024832 169 SETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANK 207 (262)
Q Consensus 169 ~~~~C~nCgtt~~~TP~WRrGp~G~~~LCNACGl~~~~~ 207 (262)
....|..|+.. ++......| ...|..|||-+.-+
T Consensus 10 ~~~~Cp~C~~~----~lv~D~~~g-e~vC~~CGlVl~e~ 43 (58)
T 1dl6_A 10 PRVTCPNHPDA----ILVEDYRAG-DMICPECGLVVGDR 43 (58)
T ss_dssp SCCSBTTBSSS----CCEECSSSC-CEECTTTCCEECCS
T ss_pred ccccCcCCCCC----ceeEeCCCC-eEEeCCCCCEEecc
Confidence 34579999874 355555556 59999999976543
No 15
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.34 E-value=22 Score=29.42 Aligned_cols=39 Identities=26% Similarity=0.479 Sum_probs=32.5
Q ss_pred CCCccceeeccCCCCCCceecCCCCCCccchhhhhHHHhcCCC
Q 024832 168 PSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGAL 210 (262)
Q Consensus 168 ~~~~~C~nCgtt~~~TP~WRrGp~G~~~LCNACGl~~~~~g~~ 210 (262)
+....|..|+. .-|.|-.-.-| ..+|-.|--..+.-|++
T Consensus 27 p~N~~CaDCga---~~P~WaS~n~G-vfiC~~CsgiHR~LG~h 65 (149)
T 2crw_A 27 PTNKVCFDCGA---KNPSWASITYG-VFLCIDCSGSHRSLGVH 65 (149)
T ss_dssp TTTSBCSSSCC---BSCCCEETTTT-EECCHHHHHHHHHHCTT
T ss_pred cCCCcCCCCcC---CCCCcEEeccC-EEEchhcchhhccCCCC
Confidence 34689999998 57999999899 59999998888777754
No 16
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=35.29 E-value=7.2 Score=25.81 Aligned_cols=32 Identities=19% Similarity=0.595 Sum_probs=21.1
Q ss_pred CccceeeccCCCCCCceecCCCCCCccchhhhhHHHh
Q 024832 170 ETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWAN 206 (262)
Q Consensus 170 ~~~C~nCgtt~~~TP~WRrGp~G~~~LCNACGl~~~~ 206 (262)
...|.+|+.+ ++-.....| ...|..||+-|..
T Consensus 5 ~~~CP~C~~~----~l~~d~~~g-elvC~~CG~v~~e 36 (50)
T 1pft_A 5 QKVCPACESA----ELIYDPERG-EIVCAKCGYVIEE 36 (50)
T ss_dssp CCSCTTTSCC----CEEEETTTT-EEEESSSCCBCCC
T ss_pred cEeCcCCCCc----ceEEcCCCC-eEECcccCCcccc
Confidence 4579999762 443333345 6899999996643
No 17
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=33.58 E-value=8.9 Score=27.95 Aligned_cols=32 Identities=16% Similarity=0.332 Sum_probs=20.8
Q ss_pred CCCCCccceeeccCCCCCCceecCCCCCCccchhhhhHH
Q 024832 166 DSPSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFW 204 (262)
Q Consensus 166 ~~~~~~~C~nCgtt~~~TP~WRrGp~G~~~LCNACGl~~ 204 (262)
.....-.|..||.. .... + +...-|..||-+.
T Consensus 24 ~~~v~Y~C~~CG~~--~e~~----~-~d~irCp~CG~RI 55 (70)
T 1twf_L 24 TATLKYICAECSSK--LSLS----R-TDAVRCKDCGHRI 55 (70)
T ss_dssp -CCCCEECSSSCCE--ECCC----T-TSTTCCSSSCCCC
T ss_pred CceEEEECCCCCCc--ceeC----C-CCCccCCCCCceE
Confidence 34567799999985 2222 2 2236899999843
No 18
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=32.80 E-value=8.4 Score=27.26 Aligned_cols=26 Identities=27% Similarity=0.779 Sum_probs=19.5
Q ss_pred CCCCccceeeccCCCCCCceecCCCCCCccchhhhhH
Q 024832 167 SPSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLF 203 (262)
Q Consensus 167 ~~~~~~C~nCgtt~~~TP~WRrGp~G~~~LCNACGl~ 203 (262)
.+....|.+||.. --++.+|-.||.|
T Consensus 27 ~p~l~~c~~cG~~-----------~~pH~vc~~CG~Y 52 (60)
T 2zjr_Z 27 APNLTECPQCHGK-----------KLSHHICPNCGYY 52 (60)
T ss_dssp CCCCEECTTTCCE-----------ECTTBCCTTTCBS
T ss_pred CCCceECCCCCCE-----------eCCceEcCCCCcC
Confidence 4567899999984 1246899999954
No 19
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=31.85 E-value=20 Score=29.28 Aligned_cols=38 Identities=16% Similarity=0.290 Sum_probs=31.7
Q ss_pred CCccceeeccCCCCCCceecCCCCCCccchhhhhHHHhcCCC
Q 024832 169 SETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGAL 210 (262)
Q Consensus 169 ~~~~C~nCgtt~~~TP~WRrGp~G~~~LCNACGl~~~~~g~~ 210 (262)
....|..|+. .-|.|-.-.-| ..+|-.|.-..+.-|++
T Consensus 35 ~N~~CaDCga---~~P~WaS~n~G-vfiC~~CsgiHR~LG~h 72 (138)
T 2owa_A 35 ENRTCFDCES---RNPTWLSLSFA-VFICLNCSSDHRKMGVH 72 (138)
T ss_dssp GGGBCTTTCC---BSCCEEETTTT-EEECHHHHHHHHTTCTT
T ss_pred CCCcCCCCcC---CCCCeEEecCC-EEEhHhhhHHHhCCCCC
Confidence 3589999998 46999999999 59999999887776653
No 20
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.65 E-value=22 Score=29.03 Aligned_cols=37 Identities=22% Similarity=0.422 Sum_probs=31.0
Q ss_pred CCccceeeccCCCCCCceecCCCCCCccchhhhhHHHhcCC
Q 024832 169 SETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGA 209 (262)
Q Consensus 169 ~~~~C~nCgtt~~~TP~WRrGp~G~~~LCNACGl~~~~~g~ 209 (262)
....|..|+. .-|.|-.-.-| ..||-.|.-..+.-|+
T Consensus 28 ~N~~CaDCga---~~P~WaS~n~G-vfiC~~CsgiHR~LG~ 64 (141)
T 2crr_A 28 DNKYCADCEA---KGPRWASWNIG-VFICIRCAGIHRNLGV 64 (141)
T ss_dssp GGSSCSSSCC---SSCCSEETTTT-EECCHHHHHHHHHHCT
T ss_pred cCCcCCCCCC---CCCCeEEeccC-eEEhhhhhHhHhcCCC
Confidence 4689999998 46999998899 5999999887777664
No 21
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=31.33 E-value=21 Score=28.93 Aligned_cols=37 Identities=22% Similarity=0.403 Sum_probs=31.4
Q ss_pred CCccceeeccCCCCCCceecCCCCCCccchhhhhHHHhcCC
Q 024832 169 SETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGA 209 (262)
Q Consensus 169 ~~~~C~nCgtt~~~TP~WRrGp~G~~~LCNACGl~~~~~g~ 209 (262)
....|..|+. .-|.|-.-.-| ..+|-.|.-..+.-|+
T Consensus 26 ~N~~CaDCg~---~~P~WaS~n~G-vfiC~~CsgiHR~lG~ 62 (134)
T 2iqj_A 26 DNKFCADCQS---KGPRWASWNIG-VFICIRCAGIHRNLGV 62 (134)
T ss_dssp GGGBCTTTCC---BSCCEEETTTT-EEECHHHHHHHHHHCT
T ss_pred CCCcCCcCcC---CCCCeEEecCC-EEEhHhhhHHHhcCCC
Confidence 4689999998 46999999999 5999999888777665
No 22
>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4
Probab=30.62 E-value=12 Score=26.37 Aligned_cols=21 Identities=24% Similarity=0.695 Sum_probs=15.6
Q ss_pred cCCCCCCccchhhhhHHHhcC
Q 024832 188 RGPSGPRSLCNACGLFWANKG 208 (262)
Q Consensus 188 rGp~G~~~LCNACGl~~~~~g 208 (262)
.+|+||++-|.-||..|.-+-
T Consensus 7 ~~~~~P~~eC~lC~vkYs~r~ 27 (55)
T 2yrk_A 7 GGTDGTKPECTLCGVKYSARL 27 (55)
T ss_dssp CCCCCCCSCCTTTTCCCCSSS
T ss_pred CCCCCCCccccccCccccccc
Confidence 367888888999988775543
No 23
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=29.76 E-value=16 Score=26.21 Aligned_cols=37 Identities=22% Similarity=0.300 Sum_probs=24.6
Q ss_pred CCCCccceeeccCCCCCCceecCCCCCCccchhhhhHHHhcCCC
Q 024832 167 SPSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGAL 210 (262)
Q Consensus 167 ~~~~~~C~nCgtt~~~TP~WRrGp~G~~~LCNACGl~~~~~g~~ 210 (262)
....-.|..|+.. .... + +...-|..||-+...|.+.
T Consensus 18 ~~v~Y~C~~Cg~~--~~l~----~-~~~iRC~~CG~RILyK~Rt 54 (63)
T 3h0g_L 18 ATMIYLCADCGAR--NTIQ----A-KEVIRCRECGHRVMYKMRT 54 (63)
T ss_dssp -CCCCBCSSSCCB--CCCC----S-SSCCCCSSSCCCCCBCCCC
T ss_pred CCeEEECCCCCCe--eecC----C-CCceECCCCCcEEEEEecC
Confidence 3567899999995 3322 2 3357899999876655543
No 24
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=27.22 E-value=37 Score=28.12 Aligned_cols=37 Identities=22% Similarity=0.395 Sum_probs=31.4
Q ss_pred CCccceeeccCCCCCCceecCCCCCCccchhhhhHHHhcCC
Q 024832 169 SETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGA 209 (262)
Q Consensus 169 ~~~~C~nCgtt~~~TP~WRrGp~G~~~LCNACGl~~~~~g~ 209 (262)
....|..|+. .-|.|-.=.-| ..||-.|.-..+.-|+
T Consensus 37 ~N~~CaDCga---~~P~WaS~nlG-vfiC~~CSgiHR~LG~ 73 (147)
T 3dwd_A 37 ENNVCFECGA---FNPQWVSVTYG-IWICLECSGRHRGLGV 73 (147)
T ss_dssp TTTBCTTTCC---BSCCEEETTTT-EEECHHHHHHHHHHCT
T ss_pred CCCccCCCCC---CCCCeEEeccc-EeEhHhhChHHhcCCC
Confidence 4689999999 46999999899 5999999988877665
No 25
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=26.10 E-value=20 Score=32.72 Aligned_cols=31 Identities=29% Similarity=0.783 Sum_probs=21.4
Q ss_pred CccceeeccCCCCCC-ceecCCCCCCccchhhhhHH
Q 024832 170 ETSCTHCGISSKSTP-MMRRGPSGPRSLCNACGLFW 204 (262)
Q Consensus 170 ~~~C~nCgtt~~~TP-~WRrGp~G~~~LCNACGl~~ 204 (262)
...|.+|+.+ +| .-..-..| ...|..||+-+
T Consensus 21 ~~~Cp~Cg~~---~~~iv~D~~~G-~~vC~~CG~Vl 52 (345)
T 3k7a_M 21 VLTCPECKVY---PPKIVERFSEG-DVVCALCGLVL 52 (345)
T ss_dssp CCCCSTTCCS---CCCCCCCSSSC-SCCCSSSCCCC
T ss_pred CCcCcCCCCC---CCceEEECCCC-CEecCCCCeEc
Confidence 4679999983 33 33344456 69999999954
No 26
>4g92_A HAPB protein; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Emericella nidulans} PDB: 4g91_A*
Probab=25.76 E-value=45 Score=24.07 Aligned_cols=26 Identities=31% Similarity=0.386 Sum_probs=21.6
Q ss_pred ceeeeehhHHHHHHhhh-ccCcccccc
Q 024832 122 KKVRYSVRQEVALRMQR-NKGQFTSAK 147 (262)
Q Consensus 122 KkirY~~Rqe~A~r~~R-~kGqfas~K 147 (262)
|.+-+++|+..|.+++| ..|+|.+.+
T Consensus 37 k~YlhESRH~HAm~R~Rg~gGRFl~~~ 63 (64)
T 4g92_A 37 KPYLHESRHNHAMRRPRGPGGRFLTAD 63 (64)
T ss_dssp CSCSCHHHHHHHHHSCBCTTSCBCCCC
T ss_pred cCcchhHHHHHHhcCCcCCCCccccCC
Confidence 56789999999999999 569997643
No 27
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=25.67 E-value=11 Score=32.11 Aligned_cols=29 Identities=24% Similarity=0.533 Sum_probs=21.6
Q ss_pred ccceeeccCCCCCCceec--CCCCCCccchhhhh
Q 024832 171 TSCTHCGISSKSTPMMRR--GPSGPRSLCNACGL 202 (262)
Q Consensus 171 ~~C~nCgtt~~~TP~WRr--Gp~G~~~LCNACGl 202 (262)
-.|..|+.+ .|-+-+. +..= -.-|+|||-
T Consensus 97 VlC~~C~sP--dT~L~k~~~~r~~-~l~C~ACGa 127 (170)
T 2g2k_A 97 VLCPECENP--ETDLHVNPKKQTI-GNSCKACGY 127 (170)
T ss_dssp HSCTTTSSS--CEEEEEETTTTEE-EEEETTTCC
T ss_pred EECCCCCCC--ccEEEEecCCCEE-EEEccccCC
Confidence 479999998 8988883 2222 257999996
No 28
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=25.38 E-value=29 Score=28.26 Aligned_cols=36 Identities=17% Similarity=0.376 Sum_probs=30.1
Q ss_pred CccceeeccCCCCCCceecCCCCCCccchhhhhHHHhcCC
Q 024832 170 ETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGA 209 (262)
Q Consensus 170 ~~~C~nCgtt~~~TP~WRrGp~G~~~LCNACGl~~~~~g~ 209 (262)
...|..|+. .-|.|-.-.-| ..+|-.|.-..+.-|+
T Consensus 25 N~~CaDCg~---~~P~WaS~n~G-vfiC~~CsgiHR~LG~ 60 (140)
T 2olm_A 25 NRKCFDCDQ---RGPTYVNMTVG-SFVCTSCSGSLRGLNP 60 (140)
T ss_dssp GGSCTTTCS---SCCCEEETTTT-EEECHHHHHHHTTSSS
T ss_pred CCcCCCCCC---CCCCceeeccC-EEEchhccchhccCCC
Confidence 589999998 57999999899 5999999887666554
No 29
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=24.61 E-value=13 Score=26.30 Aligned_cols=25 Identities=28% Similarity=0.942 Sum_probs=18.4
Q ss_pred CCCccceeeccCCCCCCceecCCCCCCccchhhhhH
Q 024832 168 PSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLF 203 (262)
Q Consensus 168 ~~~~~C~nCgtt~~~TP~WRrGp~G~~~LCNACGl~ 203 (262)
+....|.+||.. --++.+|-.||.|
T Consensus 28 p~l~~c~~cGe~-----------~~~H~vc~~CG~Y 52 (60)
T 3v2d_5 28 PTLVPCPECKAM-----------KPPHTVCPECGYY 52 (60)
T ss_dssp CCCEECTTTCCE-----------ECTTSCCTTTCEE
T ss_pred CceeECCCCCCe-----------ecceEEcCCCCcC
Confidence 457899999974 1246799999943
No 30
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=23.02 E-value=24 Score=29.12 Aligned_cols=38 Identities=24% Similarity=0.468 Sum_probs=31.5
Q ss_pred CCccceeeccCCCCCCceecCCCCCCccchhhhhHHHhcCCC
Q 024832 169 SETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGAL 210 (262)
Q Consensus 169 ~~~~C~nCgtt~~~TP~WRrGp~G~~~LCNACGl~~~~~g~~ 210 (262)
....|..|+. .-|.|-.-.-| ..+|-.|.-..+.-|++
T Consensus 36 ~N~~CaDCga---~~P~WaS~n~G-vfiC~~CsgiHR~LG~h 73 (144)
T 2p57_A 36 TNKACFDCGA---KNPSWASITYG-VFLCIDCSGVHRSLGVH 73 (144)
T ss_dssp GGGBCTTTCC---BSCCEEEGGGT-EEECHHHHHHHHHHCTT
T ss_pred CCCcCCCCcC---CCCCeEEeccC-EEEhhhchHHHcCCCCC
Confidence 3689999998 46999988888 58999999888877753
No 31
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=21.79 E-value=21 Score=28.82 Aligned_cols=31 Identities=26% Similarity=0.591 Sum_probs=22.6
Q ss_pred CccceeeccCCCCCCceecCCCCCCccchhhhh
Q 024832 170 ETSCTHCGISSKSTPMMRRGPSGPRSLCNACGL 202 (262)
Q Consensus 170 ~~~C~nCgtt~~~TP~WRrGp~G~~~LCNACGl 202 (262)
.+.|..||.. .+...-.|..+....|-.||.
T Consensus 3 ~~~C~~CG~~--~~~~~~~G~~~~~~~~~~~~~ 33 (189)
T 3cng_A 3 MKFCSQCGGE--VILRIPEGDTLPRYICPKCHT 33 (189)
T ss_dssp CCBCTTTCCB--CEEECCTTCSSCEEEETTTTE
T ss_pred cccCchhCCc--cccccccCCCCcceECCCCCC
Confidence 4689999996 555554566666678999993
No 32
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=21.78 E-value=39 Score=28.49 Aligned_cols=37 Identities=32% Similarity=0.548 Sum_probs=30.5
Q ss_pred CCccceeeccCCCCCCceecCCCCCCccchhhhhHHHhcCC
Q 024832 169 SETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGA 209 (262)
Q Consensus 169 ~~~~C~nCgtt~~~TP~WRrGp~G~~~LCNACGl~~~~~g~ 209 (262)
....|..|+. .-|.|-.=.-| ..||-.|.-..+.-|+
T Consensus 21 ~N~~CaDCga---~~P~WaS~nlG-vflCi~CSGiHR~LG~ 57 (163)
T 3sub_A 21 SNNKCFDCGI---SNPDWVSVNHG-IFLCINCSGVHRSLGV 57 (163)
T ss_dssp GGGBCTTTCC---BSCCEEETTTT-EEECHHHHHHHHHTCT
T ss_pred CCCccccCCC---CCCCeEEecCC-eeEHHhhhHHhcCCCC
Confidence 3689999999 57999999899 5999999776666554
No 33
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=21.54 E-value=35 Score=30.37 Aligned_cols=38 Identities=21% Similarity=0.368 Sum_probs=31.2
Q ss_pred CCccceeeccCCCCCCceecCCCCCCccchhhhhHHHhcCCC
Q 024832 169 SETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGAL 210 (262)
Q Consensus 169 ~~~~C~nCgtt~~~TP~WRrGp~G~~~LCNACGl~~~~~g~~ 210 (262)
....|..|+. .-|.|-.-.-| ..+|-.|.-..+.-|++
T Consensus 36 ~n~~c~dc~~---~~~~~~~~~~~-~~~c~~c~~~hr~~~~~ 73 (329)
T 3o47_A 36 ENNVCFECGA---FNPQWVSVTYG-IWICLECSGRHRGLGVH 73 (329)
T ss_dssp TTTBCTTTCC---BSCCEEEGGGT-EEECHHHHHHHHHHCTT
T ss_pred CCCcCCCCCC---CCCCeEEecCC-EEEChhhhhhhcccCCC
Confidence 3589999998 57899998889 59999998877776543
No 34
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=21.12 E-value=37 Score=23.64 Aligned_cols=22 Identities=32% Similarity=0.533 Sum_probs=16.4
Q ss_pred CCCCCCCccceeeccCCCCCCcee
Q 024832 164 QDDSPSETSCTHCGISSKSTPMMR 187 (262)
Q Consensus 164 ~~~~~~~~~C~nCgtt~~~TP~WR 187 (262)
.......|.|..|..- .+|+-|
T Consensus 5 ~~~~eD~WkC~~C~k~--N~Pl~r 26 (53)
T 2cr8_A 5 SSGSEDEWQCTECKKF--NSPSKR 26 (53)
T ss_dssp SSCCSCCEECSSSCCE--ECSSCC
T ss_pred cCCCcceeeccccccc--CCCccc
Confidence 3445678999999985 788743
No 35
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=21.10 E-value=53 Score=28.47 Aligned_cols=38 Identities=24% Similarity=0.538 Sum_probs=30.5
Q ss_pred CCCccceeeccCCCCCCceecCCCCCCccchhhhhHHHhcCC
Q 024832 168 PSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGA 209 (262)
Q Consensus 168 ~~~~~C~nCgtt~~~TP~WRrGp~G~~~LCNACGl~~~~~g~ 209 (262)
+....|..|+.. -|.|-.-.-| ..+|-.|--..+.-++
T Consensus 40 ~~n~~c~dc~~~---~p~w~s~~~g-~~~c~~cs~~hr~lg~ 77 (301)
T 2b0o_E 40 PGNSQCCDCGAA---DPTWLSTNLG-VLTCIQCSGVHRELGV 77 (301)
T ss_dssp TTTTBCTTTCCB---SCCEEETTTT-EEECHHHHHHHHHHCT
T ss_pred CCCCcCCCCCCC---CCCeEEeecC-eEEcHHHHHHHHhhCC
Confidence 457899999994 5999999999 6999999665555553
No 36
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=20.64 E-value=40 Score=20.75 Aligned_cols=25 Identities=28% Similarity=0.566 Sum_probs=17.4
Q ss_pred CCCccceeeccCCCCCCceecCCCCCCccchhhhh
Q 024832 168 PSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGL 202 (262)
Q Consensus 168 ~~~~~C~nCgtt~~~TP~WRrGp~G~~~LCNACGl 202 (262)
...|.|..|+.. .-.| +.-|+.|+.
T Consensus 4 ~gDW~C~~C~~~---Nfa~-------R~~C~~C~~ 28 (33)
T 2k1p_A 4 ANDWQCKTCSNV---NWAR-------RSECNMCNT 28 (33)
T ss_dssp SSSCBCSSSCCB---CCTT-------CSBCSSSCC
T ss_pred CCCcccCCCCCc---cccc-------cccccccCC
Confidence 457999999984 3332 468888875
No 37
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.01 E-value=17 Score=30.43 Aligned_cols=31 Identities=23% Similarity=0.449 Sum_probs=21.7
Q ss_pred ccceeeccCCCCCCceecCCCC-CCccchhhhhH
Q 024832 171 TSCTHCGISSKSTPMMRRGPSG-PRSLCNACGLF 203 (262)
Q Consensus 171 ~~C~nCgtt~~~TP~WRrGp~G-~~~LCNACGl~ 203 (262)
-.|..|+.+ .|-+-+....+ --.-|+|||-.
T Consensus 104 VlC~~C~sP--dT~L~~~~~~r~~~l~C~ACGa~ 135 (157)
T 2e9h_A 104 VLCPECENP--ETDLHVNPKKQTIGNSCKACGYR 135 (157)
T ss_dssp TSCTTTCCS--CCEEEEETTTTEEEEECSSSCCE
T ss_pred EECCCCCCC--ccEEEEecCCCEEEEEccCCCCC
Confidence 579999998 88888721111 12579999973
Done!