Query 024834
Match_columns 262
No_of_seqs 152 out of 335
Neff 3.3
Searched_HMMs 46136
Date Fri Mar 29 07:45:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024834.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024834hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00338 BRLZ basic region l 99.5 1.2E-13 2.7E-18 100.4 7.6 62 85-149 3-64 (65)
2 PF00170 bZIP_1: bZIP transcri 99.4 2.7E-12 5.8E-17 93.3 7.5 61 85-148 3-63 (64)
3 PF07716 bZIP_2: Basic region 99.1 1.5E-10 3.2E-15 82.3 6.9 46 85-131 3-48 (54)
4 KOG0837 Transcriptional activa 98.8 2E-08 4.4E-13 93.0 8.0 65 86-160 205-269 (279)
5 KOG4571 Activating transcripti 98.6 2E-07 4.3E-12 87.3 10.1 66 85-153 225-290 (294)
6 KOG4343 bZIP transcription fac 98.6 6.3E-08 1.4E-12 97.0 7.0 62 82-153 276-337 (655)
7 KOG4005 Transcription factor X 98.6 2.3E-07 5.1E-12 85.7 8.4 68 84-151 66-144 (292)
8 KOG3584 cAMP response element 98.5 9.6E-08 2.1E-12 90.1 5.4 49 84-132 288-336 (348)
9 KOG0709 CREB/ATF family transc 98.4 3.1E-07 6.7E-12 90.4 4.3 72 82-156 246-317 (472)
10 PF03131 bZIP_Maf: bZIP Maf tr 97.9 8E-08 1.7E-12 74.9 -8.9 48 84-131 27-74 (92)
11 KOG3119 Basic region leucine z 97.5 0.00039 8.5E-09 63.8 7.5 58 89-149 196-253 (269)
12 KOG3863 bZIP transcription fac 97.1 0.0014 2.9E-08 67.0 7.5 67 87-156 490-556 (604)
13 KOG4196 bZIP transcription fac 96.7 0.012 2.7E-07 50.3 8.9 64 83-156 49-112 (135)
14 TIGR02449 conserved hypothetic 96.0 0.034 7.3E-07 42.3 6.9 53 108-163 7-59 (65)
15 PRK13922 rod shape-determining 94.9 0.12 2.6E-06 46.5 7.9 49 102-150 63-111 (276)
16 PF06005 DUF904: Protein of un 94.8 0.14 3.1E-06 39.2 6.8 49 110-161 20-68 (72)
17 TIGR00219 mreC rod shape-deter 94.1 0.14 3.1E-06 47.3 6.7 43 108-150 66-109 (283)
18 PF06156 DUF972: Protein of un 93.8 0.32 6.9E-06 39.8 7.3 46 108-156 8-53 (107)
19 PF08826 DMPK_coil: DMPK coile 92.3 0.75 1.6E-05 34.6 6.8 43 112-154 15-61 (61)
20 PRK13169 DNA replication intia 92.1 0.78 1.7E-05 38.0 7.3 44 108-151 8-55 (110)
21 PRK10884 SH3 domain-containing 91.9 0.85 1.8E-05 41.0 7.9 25 107-131 124-148 (206)
22 PF04102 SlyX: SlyX; InterPro 91.6 1.3 2.9E-05 33.1 7.6 48 107-157 3-50 (69)
23 PF04880 NUDE_C: NUDE protein, 91.4 0.33 7.1E-06 42.8 4.6 46 110-155 2-47 (166)
24 PRK10884 SH3 domain-containing 91.1 1.8 3.9E-05 38.9 9.1 67 90-156 82-156 (206)
25 PRK00295 hypothetical protein; 90.9 1.7 3.6E-05 32.9 7.5 48 107-157 4-51 (68)
26 PRK15422 septal ring assembly 90.5 1.4 3E-05 35.1 7.0 53 110-162 20-76 (79)
27 KOG1414 Transcriptional activa 90.4 0.049 1.1E-06 52.5 -1.4 61 82-144 280-340 (395)
28 PF06156 DUF972: Protein of un 90.3 1.3 2.9E-05 36.2 7.0 44 107-153 14-57 (107)
29 PHA03155 hypothetical protein; 90.3 1.4 2.9E-05 37.2 7.1 49 109-157 9-72 (115)
30 PRK04325 hypothetical protein; 90.2 2 4.4E-05 32.8 7.5 47 108-157 9-55 (74)
31 PF07106 TBPIP: Tat binding pr 90.2 1.8 3.8E-05 36.6 7.9 48 110-157 81-134 (169)
32 PRK04406 hypothetical protein; 89.9 2.2 4.8E-05 32.9 7.5 48 107-157 10-57 (75)
33 COG3074 Uncharacterized protei 89.8 1.7 3.7E-05 34.3 6.9 53 110-162 20-76 (79)
34 PF05812 Herpes_BLRF2: Herpesv 89.8 2.2 4.7E-05 36.1 7.9 27 106-132 1-27 (118)
35 PRK02793 phi X174 lysis protei 89.7 2.4 5.1E-05 32.4 7.5 48 107-157 7-54 (72)
36 PHA03162 hypothetical protein; 89.5 0.93 2E-05 39.1 5.7 29 104-132 9-37 (135)
37 PRK13729 conjugal transfer pil 89.4 1 2.2E-05 45.5 6.7 49 108-156 76-128 (475)
38 KOG3119 Basic region leucine z 89.2 1.7 3.6E-05 40.3 7.6 61 98-161 191-251 (269)
39 COG1792 MreC Cell shape-determ 89.2 1.2 2.6E-05 41.5 6.7 49 102-150 60-108 (284)
40 PRK02119 hypothetical protein; 89.1 2.8 6E-05 32.1 7.5 49 106-157 7-55 (73)
41 PRK00888 ftsB cell division pr 89.0 1.5 3.3E-05 35.4 6.4 33 104-146 30-62 (105)
42 PRK00736 hypothetical protein; 88.3 3.5 7.5E-05 31.1 7.5 48 107-157 4-51 (68)
43 PF12808 Mto2_bdg: Micro-tubul 88.3 1.5 3.3E-05 32.2 5.3 46 105-153 1-50 (52)
44 PRK13169 DNA replication intia 87.9 2.4 5.2E-05 35.1 6.9 48 111-158 4-55 (110)
45 PF15058 Speriolin_N: Sperioli 87.4 3.1 6.8E-05 38.0 7.9 38 111-152 8-45 (200)
46 PF08232 Striatin: Striatin fa 87.4 2.1 4.5E-05 36.0 6.3 47 103-152 27-73 (134)
47 PF12718 Tropomyosin_1: Tropom 87.0 3.7 8E-05 34.8 7.7 50 107-156 13-66 (143)
48 PF03993 DUF349: Domain of Unk 86.7 6.9 0.00015 28.4 8.1 66 96-163 8-73 (77)
49 PF04728 LPP: Lipoprotein leuc 86.3 4.8 0.0001 30.1 7.0 50 108-160 3-52 (56)
50 TIGR03752 conj_TIGR03752 integ 86.0 2.9 6.3E-05 42.3 7.6 48 109-156 74-140 (472)
51 PF10805 DUF2730: Protein of u 85.7 5.7 0.00012 32.0 7.8 51 106-156 33-89 (106)
52 COG4467 Regulator of replicati 85.7 3.7 8.1E-05 34.6 6.9 46 109-157 9-54 (114)
53 PRK00846 hypothetical protein; 85.4 5.9 0.00013 31.1 7.5 51 106-159 11-61 (77)
54 KOG1318 Helix loop helix trans 85.0 8.5 0.00018 38.4 10.2 68 85-152 227-317 (411)
55 COG2433 Uncharacterized conser 85.0 3.1 6.8E-05 43.5 7.5 44 108-151 436-493 (652)
56 PF09726 Macoilin: Transmembra 84.7 6.2 0.00013 41.4 9.5 71 95-166 574-663 (697)
57 TIGR03752 conj_TIGR03752 integ 84.2 2.6 5.7E-05 42.6 6.4 22 109-130 67-88 (472)
58 PF02183 HALZ: Homeobox associ 83.9 5.2 0.00011 28.3 6.0 41 113-156 3-43 (45)
59 PF07926 TPR_MLP1_2: TPR/MLP1/ 83.5 15 0.00033 30.2 9.7 57 97-153 17-73 (132)
60 COG4026 Uncharacterized protei 83.3 5 0.00011 38.0 7.4 54 97-153 152-205 (290)
61 PRK14872 rod shape-determining 83.3 3.4 7.4E-05 40.0 6.6 42 108-149 57-98 (337)
62 PF08172 CASP_C: CASP C termin 83.0 3.8 8.1E-05 37.9 6.4 41 101-144 86-126 (248)
63 PF11932 DUF3450: Protein of u 82.8 7 0.00015 35.1 8.0 29 104-132 52-80 (251)
64 PF14197 Cep57_CLD_2: Centroso 82.5 8.1 0.00018 29.4 7.1 42 111-152 22-67 (69)
65 PRK00888 ftsB cell division pr 82.3 6.7 0.00014 31.7 6.9 34 110-153 29-62 (105)
66 COG1579 Zn-ribbon protein, pos 82.0 9 0.00019 35.6 8.5 44 89-132 33-76 (239)
67 COG4942 Membrane-bound metallo 81.8 7.2 0.00016 39.0 8.3 46 87-132 38-83 (420)
68 KOG4343 bZIP transcription fac 81.7 2.3 5E-05 44.1 4.9 67 76-145 274-343 (655)
69 KOG4797 Transcriptional regula 81.6 7 0.00015 33.2 7.0 32 112-146 64-95 (123)
70 PF05700 BCAS2: Breast carcino 81.5 7.9 0.00017 34.6 7.8 14 111-124 139-152 (221)
71 PF08614 ATG16: Autophagy prot 81.5 10 0.00022 33.0 8.3 25 107-131 115-139 (194)
72 PF11932 DUF3450: Protein of u 81.4 15 0.00033 33.0 9.6 26 106-131 40-65 (251)
73 PRK11637 AmiB activator; Provi 80.9 11 0.00025 36.2 9.1 30 102-131 69-98 (428)
74 PF04977 DivIC: Septum formati 80.9 9.9 0.00022 27.5 6.9 28 104-131 20-47 (80)
75 PF13747 DUF4164: Domain of un 80.8 12 0.00027 29.5 7.8 69 87-158 11-79 (89)
76 PF06785 UPF0242: Uncharacteri 80.7 5.5 0.00012 39.4 6.9 48 104-151 123-174 (401)
77 PRK09039 hypothetical protein; 80.6 14 0.0003 35.4 9.5 16 112-127 141-156 (343)
78 PF11559 ADIP: Afadin- and alp 80.5 16 0.00035 30.3 8.8 46 87-132 45-90 (151)
79 PF12325 TMF_TATA_bd: TATA ele 79.9 9.9 0.00021 31.8 7.3 18 139-156 68-85 (120)
80 KOG1414 Transcriptional activa 79.5 0.091 2E-06 50.7 -5.5 48 84-131 151-202 (395)
81 PRK11637 AmiB activator; Provi 79.3 14 0.0003 35.7 9.1 36 91-126 181-216 (428)
82 COG1579 Zn-ribbon protein, pos 78.7 12 0.00026 34.8 8.2 47 108-154 28-74 (239)
83 PF04340 DUF484: Protein of un 77.9 11 0.00025 33.1 7.6 33 110-142 42-74 (225)
84 PF09726 Macoilin: Transmembra 77.8 8.9 0.00019 40.3 7.9 21 111-131 548-568 (697)
85 PF03962 Mnd1: Mnd1 family; I 77.7 17 0.00037 32.0 8.6 9 139-147 117-125 (188)
86 TIGR00219 mreC rod shape-deter 77.6 11 0.00024 35.1 7.7 49 109-157 60-109 (283)
87 KOG0977 Nuclear envelope prote 77.4 6.3 0.00014 40.6 6.5 53 99-151 33-104 (546)
88 PF08614 ATG16: Autophagy prot 77.4 29 0.00063 30.2 9.8 54 102-155 124-181 (194)
89 PF01166 TSC22: TSC-22/dip/bun 77.4 4.1 9E-05 30.9 3.9 30 115-147 14-43 (59)
90 PF13863 DUF4200: Domain of un 77.1 15 0.00033 29.1 7.4 45 89-133 62-106 (126)
91 PF14257 DUF4349: Domain of un 77.0 7.1 0.00015 35.0 6.1 21 136-156 173-193 (262)
92 PRK10963 hypothetical protein; 76.5 10 0.00022 33.9 6.9 20 114-133 43-62 (223)
93 PF14389 Lzipper-MIP1: Leucine 76.5 24 0.00051 27.8 8.2 23 134-156 63-85 (88)
94 KOG0977 Nuclear envelope prote 76.3 12 0.00027 38.6 8.2 25 135-159 172-196 (546)
95 PF07798 DUF1640: Protein of u 76.3 13 0.00028 32.1 7.2 20 142-161 123-142 (177)
96 PF00038 Filament: Intermediat 76.1 29 0.00063 31.4 9.8 28 105-132 220-247 (312)
97 PF04350 PilO: Pilus assembly 76.0 2.7 5.8E-05 33.5 2.8 24 108-131 23-46 (144)
98 PF06005 DUF904: Protein of un 75.8 22 0.00048 27.3 7.7 17 135-151 35-51 (72)
99 PF14077 WD40_alt: Alternative 75.7 2.5 5.5E-05 30.8 2.3 23 107-129 17-39 (48)
100 PF11559 ADIP: Afadin- and alp 75.5 27 0.00058 28.9 8.7 22 107-128 79-100 (151)
101 PF01486 K-box: K-box region; 75.2 7.8 0.00017 30.3 5.2 34 98-131 61-98 (100)
102 PF00038 Filament: Intermediat 75.0 20 0.00043 32.5 8.4 41 108-148 230-278 (312)
103 PF07888 CALCOCO1: Calcium bin 74.8 19 0.00041 37.3 9.1 65 92-156 155-223 (546)
104 PF09304 Cortex-I_coil: Cortex 74.8 34 0.00073 28.7 9.0 57 90-149 19-75 (107)
105 PRK15178 Vi polysaccharide exp 74.1 11 0.00024 37.8 7.1 70 88-157 254-339 (434)
106 KOG2391 Vacuolar sorting prote 74.1 15 0.00032 36.3 7.8 49 102-153 219-267 (365)
107 TIGR02894 DNA_bind_RsfA transc 73.9 30 0.00066 30.7 9.0 42 104-148 107-148 (161)
108 PRK11546 zraP zinc resistance 73.9 23 0.00051 30.7 8.2 61 97-157 50-114 (143)
109 KOG4005 Transcription factor X 73.7 19 0.00041 34.3 8.2 14 134-147 106-119 (292)
110 PRK09174 F0F1 ATP synthase sub 73.7 30 0.00066 30.9 9.1 47 86-132 83-129 (204)
111 PRK13922 rod shape-determining 73.3 34 0.00075 30.8 9.5 43 114-156 68-110 (276)
112 PF12711 Kinesin-relat_1: Kine 73.2 16 0.00035 29.3 6.5 44 112-155 21-67 (86)
113 PF01166 TSC22: TSC-22/dip/bun 73.2 6.3 0.00014 29.9 4.0 25 107-131 20-44 (59)
114 PF10805 DUF2730: Protein of u 73.1 28 0.0006 28.1 8.0 46 105-153 46-93 (106)
115 PF06818 Fez1: Fez1; InterPro 72.3 11 0.00023 34.5 6.0 26 137-162 136-161 (202)
116 PF10224 DUF2205: Predicted co 71.5 39 0.00084 26.7 8.2 42 110-151 18-63 (80)
117 KOG0709 CREB/ATF family transc 71.4 7.8 0.00017 39.4 5.4 60 83-142 251-320 (472)
118 KOG1853 LIS1-interacting prote 71.3 30 0.00065 33.4 9.0 21 111-131 94-114 (333)
119 PF07989 Microtub_assoc: Micro 71.3 23 0.0005 27.3 6.8 22 110-131 2-23 (75)
120 PRK10803 tol-pal system protei 71.3 15 0.00033 33.7 6.8 28 105-132 58-85 (263)
121 PF03980 Nnf1: Nnf1 ; InterPr 70.8 8.8 0.00019 30.3 4.6 28 105-132 77-104 (109)
122 PF10186 Atg14: UV radiation r 70.6 34 0.00074 30.1 8.7 18 139-156 126-143 (302)
123 PF06785 UPF0242: Uncharacteri 69.8 24 0.00052 35.1 8.1 66 84-153 72-155 (401)
124 KOG4196 bZIP transcription fac 68.7 17 0.00037 31.6 6.1 27 136-162 85-111 (135)
125 PF07106 TBPIP: Tat binding pr 68.2 32 0.00069 29.1 7.7 19 135-153 119-137 (169)
126 COG2900 SlyX Uncharacterized p 68.1 38 0.00083 26.6 7.4 48 107-157 7-54 (72)
127 PF14817 HAUS5: HAUS augmin-li 68.1 26 0.00056 36.7 8.4 22 111-132 82-103 (632)
128 PRK13454 F0F1 ATP synthase sub 68.0 56 0.0012 28.3 9.3 46 87-132 62-107 (181)
129 KOG0288 WD40 repeat protein Ti 67.9 32 0.00068 35.0 8.7 43 89-131 29-71 (459)
130 PF07820 TraC: TraC-like prote 67.6 9.1 0.0002 31.2 4.1 52 108-159 2-63 (92)
131 PF04977 DivIC: Septum formati 67.5 23 0.0005 25.6 5.9 33 109-144 18-50 (80)
132 PF15188 CCDC-167: Coiled-coil 67.5 26 0.00055 28.1 6.5 50 107-156 4-60 (85)
133 KOG0963 Transcription factor/C 67.3 25 0.00055 37.0 8.2 52 95-146 304-358 (629)
134 PF05308 Mito_fiss_reg: Mitoch 67.3 7.8 0.00017 36.1 4.2 33 122-157 115-147 (253)
135 PF04111 APG6: Autophagy prote 67.2 23 0.0005 33.5 7.3 27 105-131 61-87 (314)
136 TIGR00606 rad50 rad50. This fa 67.2 30 0.00065 38.3 9.1 64 93-156 842-905 (1311)
137 cd07624 BAR_SNX7_30 The Bin/Am 67.1 21 0.00046 31.2 6.6 26 98-123 113-138 (200)
138 PF13851 GAS: Growth-arrest sp 67.0 47 0.001 29.6 8.8 44 88-131 73-116 (201)
139 PRK09413 IS2 repressor TnpA; R 66.4 23 0.0005 28.5 6.3 14 135-148 88-101 (121)
140 KOG1029 Endocytic adaptor prot 66.3 22 0.00048 38.9 7.6 21 136-156 441-461 (1118)
141 PF10458 Val_tRNA-synt_C: Valy 66.2 36 0.00077 25.0 6.7 26 107-132 3-28 (66)
142 PRK09039 hypothetical protein; 66.1 26 0.00057 33.5 7.5 9 110-118 146-154 (343)
143 PF10211 Ax_dynein_light: Axon 65.7 70 0.0015 28.2 9.6 23 110-132 122-144 (189)
144 PF05278 PEARLI-4: Arabidopsis 65.5 51 0.0011 31.4 9.2 25 107-131 206-230 (269)
145 PF12325 TMF_TATA_bd: TATA ele 65.5 64 0.0014 27.0 8.8 17 139-155 96-112 (120)
146 PF09730 BicD: Microtubule-ass 65.5 21 0.00045 38.0 7.2 40 110-149 71-114 (717)
147 TIGR02449 conserved hypothetic 65.4 39 0.00084 25.9 6.9 36 111-146 24-60 (65)
148 COG1196 Smc Chromosome segrega 65.4 31 0.00067 37.8 8.7 63 88-154 220-282 (1163)
149 COG2919 Septum formation initi 65.2 24 0.00051 28.9 6.2 39 110-151 52-90 (117)
150 PF09304 Cortex-I_coil: Cortex 65.0 46 0.00099 27.9 7.8 61 96-156 4-75 (107)
151 TIGR02209 ftsL_broad cell divi 64.9 25 0.00055 26.1 5.8 27 105-131 28-54 (85)
152 PF02403 Seryl_tRNA_N: Seryl-t 64.7 64 0.0014 25.1 8.3 45 107-151 42-86 (108)
153 PF08581 Tup_N: Tup N-terminal 64.5 43 0.00092 26.3 7.1 42 109-150 26-75 (79)
154 PHA02675 ORF104 fusion protein 64.4 44 0.00094 27.3 7.3 29 135-163 61-89 (90)
155 PF09744 Jnk-SapK_ap_N: JNK_SA 64.3 45 0.00097 29.1 8.0 22 111-132 92-113 (158)
156 PF09738 DUF2051: Double stran 63.9 35 0.00076 32.6 7.9 72 84-155 89-170 (302)
157 CHL00118 atpG ATP synthase CF0 63.8 79 0.0017 26.5 9.2 46 87-132 53-98 (156)
158 PF02183 HALZ: Homeobox associ 63.6 30 0.00066 24.4 5.6 35 111-148 8-42 (45)
159 PF10186 Atg14: UV radiation r 63.6 63 0.0014 28.5 9.0 50 102-154 57-106 (302)
160 PRK10803 tol-pal system protei 63.6 45 0.00098 30.6 8.3 24 109-132 55-78 (263)
161 PF05791 Bacillus_HBL: Bacillu 63.4 56 0.0012 28.5 8.5 62 102-163 104-166 (184)
162 PRK14474 F0F1 ATP synthase sub 63.3 63 0.0014 29.6 9.1 46 87-132 36-81 (250)
163 PF11382 DUF3186: Protein of u 63.2 23 0.0005 33.3 6.5 23 110-132 34-56 (308)
164 PRK05759 F0F1 ATP synthase sub 63.1 84 0.0018 25.8 9.2 46 87-132 35-80 (156)
165 PF06305 DUF1049: Protein of u 63.0 7.4 0.00016 27.9 2.5 16 105-120 52-67 (68)
166 PF07767 Nop53: Nop53 (60S rib 62.4 73 0.0016 30.5 9.8 44 87-130 276-322 (387)
167 PF05278 PEARLI-4: Arabidopsis 62.4 66 0.0014 30.7 9.3 22 135-156 217-238 (269)
168 TIGR02894 DNA_bind_RsfA transc 62.0 27 0.00059 31.0 6.3 44 110-156 99-142 (161)
169 KOG0804 Cytoplasmic Zn-finger 61.8 36 0.00078 34.9 7.8 33 94-131 328-360 (493)
170 PF05266 DUF724: Protein of un 61.8 44 0.00096 29.8 7.7 30 91-120 93-122 (190)
171 KOG4348 Adaptor protein CMS/SE 61.3 24 0.00053 36.4 6.6 49 105-159 566-617 (627)
172 TIGR03185 DNA_S_dndD DNA sulfu 60.9 59 0.0013 33.2 9.3 29 136-164 266-295 (650)
173 PRK13182 racA polar chromosome 60.2 45 0.00097 29.4 7.4 52 106-157 90-143 (175)
174 PF07889 DUF1664: Protein of u 60.2 1.1E+02 0.0023 26.1 9.4 50 106-155 66-119 (126)
175 PF09403 FadA: Adhesion protei 60.1 41 0.0009 28.5 6.8 43 88-132 34-76 (126)
176 PRK08476 F0F1 ATP synthase sub 60.1 80 0.0017 26.3 8.5 44 88-131 39-82 (141)
177 PRK13455 F0F1 ATP synthase sub 60.1 94 0.002 26.7 9.2 46 87-132 58-103 (184)
178 PRK06569 F0F1 ATP synthase sub 59.8 81 0.0017 27.6 8.8 44 87-130 41-84 (155)
179 PRK07352 F0F1 ATP synthase sub 59.5 98 0.0021 26.3 9.1 46 87-132 50-95 (174)
180 PRK15396 murein lipoprotein; P 59.5 53 0.0012 25.8 6.9 48 109-159 26-73 (78)
181 PF00170 bZIP_1: bZIP transcri 59.4 34 0.00074 24.7 5.5 23 108-130 33-55 (64)
182 cd07596 BAR_SNX The Bin/Amphip 59.2 85 0.0019 26.1 8.6 23 91-113 114-136 (218)
183 TIGR02977 phageshock_pspA phag 59.1 90 0.0019 27.7 9.2 25 107-131 98-122 (219)
184 PF13935 Ead_Ea22: Ead/Ea22-li 59.0 53 0.0012 27.5 7.3 22 110-131 92-113 (139)
185 PF07558 Shugoshin_N: Shugoshi 59.0 10 0.00022 26.8 2.6 42 88-130 2-43 (46)
186 PRK14127 cell division protein 58.8 31 0.00067 28.7 5.8 22 135-156 47-68 (109)
187 COG4026 Uncharacterized protei 58.7 42 0.00091 32.0 7.2 24 108-131 135-158 (290)
188 PF10473 CENP-F_leu_zip: Leuci 58.5 1E+02 0.0022 26.6 9.1 40 92-131 36-75 (140)
189 PF15556 Zwint: ZW10 interacto 58.2 70 0.0015 30.1 8.5 64 91-157 117-180 (252)
190 COG1792 MreC Cell shape-determ 58.2 42 0.00092 31.4 7.2 46 115-160 66-111 (284)
191 PF12737 Mating_C: C-terminal 57.7 11 0.00024 37.5 3.5 25 100-124 394-418 (419)
192 KOG3540 Beta amyloid precursor 57.6 20 0.00043 37.2 5.3 43 108-150 271-314 (615)
193 PF11544 Spc42p: Spindle pole 57.4 27 0.00058 27.7 4.9 27 108-134 12-38 (76)
194 COG2433 Uncharacterized conser 56.8 55 0.0012 34.7 8.4 17 105-121 447-463 (652)
195 KOG0804 Cytoplasmic Zn-finger 56.5 90 0.0019 32.2 9.6 43 90-132 367-413 (493)
196 PF05266 DUF724: Protein of un 56.5 62 0.0013 28.9 7.7 52 102-156 125-176 (190)
197 TIGR01010 BexC_CtrB_KpsE polys 56.4 36 0.00078 31.8 6.5 26 96-121 165-190 (362)
198 PF04420 CHD5: CHD5-like prote 56.4 38 0.00083 29.0 6.2 22 135-156 76-97 (161)
199 PRK05892 nucleoside diphosphat 56.3 69 0.0015 27.6 7.7 50 107-156 10-71 (158)
200 PF14662 CCDC155: Coiled-coil 56.3 51 0.0011 30.1 7.2 17 134-150 62-78 (193)
201 PF02346 Vac_Fusion: Chordopox 56.3 81 0.0018 23.6 7.1 51 110-160 3-57 (57)
202 KOG1962 B-cell receptor-associ 56.3 31 0.00066 31.9 5.9 17 140-156 194-210 (216)
203 PF03233 Cauli_AT: Aphid trans 56.2 36 0.00078 30.3 6.1 50 111-160 114-163 (163)
204 COG3167 PilO Tfp pilus assembl 56.1 36 0.00078 31.5 6.2 54 106-166 47-100 (211)
205 PF09755 DUF2046: Uncharacteri 55.8 65 0.0014 31.3 8.2 50 105-154 226-283 (310)
206 TIGR01069 mutS2 MutS2 family p 55.5 65 0.0014 34.2 8.9 37 95-131 530-566 (771)
207 PF04642 DUF601: Protein of un 55.4 19 0.00041 34.6 4.5 49 108-156 217-269 (311)
208 PF05103 DivIVA: DivIVA protei 55.3 7.4 0.00016 30.9 1.6 41 108-148 25-69 (131)
209 PF08647 BRE1: BRE1 E3 ubiquit 55.2 1E+02 0.0022 24.3 8.4 60 91-150 7-70 (96)
210 PF13815 Dzip-like_N: Iguana/D 54.7 67 0.0014 26.1 7.0 21 110-130 82-102 (118)
211 PRK08032 fliD flagellar cappin 54.6 56 0.0012 32.3 7.8 48 108-155 413-461 (462)
212 PF06216 RTBV_P46: Rice tungro 54.6 61 0.0013 31.6 7.7 27 107-133 77-103 (389)
213 PF10146 zf-C4H2: Zinc finger- 54.4 84 0.0018 28.9 8.3 25 107-131 31-55 (230)
214 PF05377 FlaC_arch: Flagella a 54.3 88 0.0019 23.4 6.9 21 111-131 10-30 (55)
215 PRK13453 F0F1 ATP synthase sub 54.3 1.4E+02 0.003 25.6 9.2 46 87-132 49-94 (173)
216 PF04156 IncA: IncA protein; 54.2 1.3E+02 0.0029 25.4 9.4 34 95-128 117-150 (191)
217 PRK14472 F0F1 ATP synthase sub 54.1 1.4E+02 0.0029 25.5 9.1 46 87-132 49-94 (175)
218 TIGR01843 type_I_hlyD type I s 54.1 1.2E+02 0.0026 28.0 9.4 20 137-156 251-270 (423)
219 PF14197 Cep57_CLD_2: Centroso 53.8 76 0.0016 24.2 6.8 21 112-132 2-22 (69)
220 PRK10636 putative ABC transpor 53.6 88 0.0019 32.0 9.2 26 107-132 562-587 (638)
221 PF13805 Pil1: Eisosome compon 53.6 45 0.00097 31.7 6.6 21 87-107 127-148 (271)
222 PF11365 DUF3166: Protein of u 53.5 63 0.0014 26.5 6.6 42 111-155 4-45 (96)
223 PF13747 DUF4164: Domain of un 53.1 87 0.0019 24.8 7.2 10 135-144 35-44 (89)
224 PF14335 DUF4391: Domain of un 53.0 34 0.00073 30.4 5.5 44 103-147 177-220 (221)
225 PRK11147 ABC transporter ATPas 53.0 67 0.0015 32.6 8.2 52 105-156 565-626 (635)
226 PF08549 SWI-SNF_Ssr4: Fungal 53.0 44 0.00096 35.5 7.0 53 97-149 360-412 (669)
227 PRK04863 mukB cell division pr 52.9 72 0.0016 36.6 9.1 20 88-107 322-341 (1486)
228 COG4467 Regulator of replicati 52.9 20 0.00043 30.4 3.7 40 108-150 15-54 (114)
229 PF12128 DUF3584: Protein of u 52.6 77 0.0017 35.0 9.1 63 97-162 479-541 (1201)
230 PF14282 FlxA: FlxA-like prote 52.6 40 0.00086 27.2 5.4 22 135-156 54-75 (106)
231 TIGR01000 bacteriocin_acc bact 52.4 64 0.0014 31.4 7.7 18 137-154 241-258 (457)
232 KOG0681 Actin-related protein 52.3 29 0.00063 36.5 5.6 70 83-152 347-425 (645)
233 PF05531 NPV_P10: Nucleopolyhe 51.7 78 0.0017 25.0 6.6 52 108-159 11-69 (75)
234 KOG4643 Uncharacterized coiled 51.6 51 0.0011 36.9 7.4 28 105-132 527-554 (1195)
235 PF12329 TMF_DNA_bd: TATA elem 51.6 1.1E+02 0.0023 23.4 7.7 45 106-150 10-58 (74)
236 cd07622 BAR_SNX4 The Bin/Amphi 51.4 42 0.00091 29.9 5.8 47 98-144 112-163 (201)
237 PF15290 Syntaphilin: Golgi-lo 51.0 52 0.0011 31.9 6.7 28 96-124 78-105 (305)
238 PF07407 Seadorna_VP6: Seadorn 50.8 39 0.00084 33.7 5.9 20 105-124 43-62 (420)
239 PF02388 FemAB: FemAB family; 50.8 65 0.0014 31.2 7.4 50 107-156 241-297 (406)
240 PF08172 CASP_C: CASP C termin 50.8 58 0.0013 30.2 6.8 44 113-156 84-131 (248)
241 PF08700 Vps51: Vps51/Vps67; 50.7 91 0.002 23.1 6.7 23 134-156 60-82 (87)
242 cd07596 BAR_SNX The Bin/Amphip 50.4 86 0.0019 26.1 7.2 30 98-127 107-136 (218)
243 PF08317 Spc7: Spc7 kinetochor 50.4 72 0.0016 30.0 7.5 6 26-31 16-21 (325)
244 PRK03992 proteasome-activating 50.4 57 0.0012 31.2 6.9 40 111-153 11-50 (389)
245 PF10146 zf-C4H2: Zinc finger- 50.3 75 0.0016 29.3 7.4 41 111-154 63-103 (230)
246 PRK09973 putative outer membra 50.3 94 0.002 25.0 7.0 45 109-156 25-69 (85)
247 PF06295 DUF1043: Protein of u 50.1 1.1E+02 0.0024 25.3 7.8 55 101-155 18-80 (128)
248 PRK14471 F0F1 ATP synthase sub 50.0 1.5E+02 0.0033 24.8 9.2 46 87-132 39-84 (164)
249 PF14775 NYD-SP28_assoc: Sperm 49.9 35 0.00075 25.3 4.3 33 120-156 25-57 (60)
250 PF04728 LPP: Lipoprotein leuc 49.9 86 0.0019 23.5 6.3 32 116-150 4-35 (56)
251 PF10883 DUF2681: Protein of u 49.9 86 0.0019 25.2 6.8 21 111-131 26-46 (87)
252 PF07926 TPR_MLP1_2: TPR/MLP1/ 49.7 1.2E+02 0.0025 25.0 7.8 34 96-130 41-74 (132)
253 KOG0999 Microtubule-associated 49.6 55 0.0012 34.8 7.0 41 113-153 147-191 (772)
254 TIGR03007 pepcterm_ChnLen poly 49.2 99 0.0021 30.0 8.4 50 107-156 323-379 (498)
255 PTZ00454 26S protease regulato 49.1 83 0.0018 30.7 7.9 39 112-153 26-64 (398)
256 PF09325 Vps5: Vps5 C terminal 49.1 88 0.0019 26.9 7.3 17 143-159 181-197 (236)
257 COG1340 Uncharacterized archae 48.9 1.6E+02 0.0035 28.4 9.6 69 90-158 29-102 (294)
258 PF15294 Leu_zip: Leucine zipp 48.6 59 0.0013 31.1 6.6 41 113-153 130-174 (278)
259 PRK13460 F0F1 ATP synthase sub 48.5 1.7E+02 0.0037 24.9 9.2 46 87-132 47-92 (173)
260 TIGR03185 DNA_S_dndD DNA sulfu 48.4 60 0.0013 33.2 7.1 23 135-157 233-255 (650)
261 TIGR01010 BexC_CtrB_KpsE polys 48.4 1.6E+02 0.0035 27.5 9.4 51 106-156 168-231 (362)
262 cd00890 Prefoldin Prefoldin is 48.4 71 0.0015 25.0 6.1 46 111-156 2-47 (129)
263 PF06657 Cep57_MT_bd: Centroso 48.3 87 0.0019 24.3 6.4 25 108-132 17-41 (79)
264 PF12709 Kinetocho_Slk19: Cent 48.1 1E+02 0.0022 25.0 6.9 28 104-131 45-72 (87)
265 PF13093 FTA4: Kinetochore com 48.1 13 0.00028 33.6 2.1 66 89-154 147-213 (213)
266 cd07627 BAR_Vps5p The Bin/Amph 48.1 1.5E+02 0.0032 26.2 8.7 28 100-127 107-134 (216)
267 PF07334 IFP_35_N: Interferon- 48.1 38 0.00083 26.8 4.4 27 117-146 2-28 (76)
268 KOG4001 Axonemal dynein light 48.0 98 0.0021 29.2 7.8 36 97-132 170-209 (259)
269 PTZ00419 valyl-tRNA synthetase 48.0 59 0.0013 35.2 7.3 27 106-132 927-953 (995)
270 TIGR03689 pup_AAA proteasome A 47.9 46 0.001 33.9 6.1 41 110-153 3-43 (512)
271 PF07716 bZIP_2: Basic region 47.9 92 0.002 21.9 6.0 17 135-151 35-51 (54)
272 PRK05431 seryl-tRNA synthetase 47.8 87 0.0019 30.8 7.9 64 100-163 34-104 (425)
273 COG3159 Uncharacterized protei 47.8 62 0.0014 30.1 6.4 17 116-132 46-62 (218)
274 COG3883 Uncharacterized protei 47.7 1E+02 0.0023 29.3 8.1 21 136-156 77-97 (265)
275 PF07047 OPA3: Optic atrophy 3 47.6 33 0.00071 28.7 4.3 22 107-128 111-132 (134)
276 PF04799 Fzo_mitofusin: fzo-li 47.5 1.1E+02 0.0024 27.4 7.8 41 109-156 121-161 (171)
277 PF10226 DUF2216: Uncharacteri 47.3 1.8E+02 0.0039 26.8 9.1 37 97-133 20-56 (195)
278 PF09403 FadA: Adhesion protei 47.3 1.3E+02 0.0028 25.6 7.8 47 110-156 29-76 (126)
279 KOG0995 Centromere-associated 47.3 1.3E+02 0.0028 31.7 9.2 48 109-156 302-356 (581)
280 KOG2129 Uncharacterized conser 47.2 75 0.0016 32.7 7.4 25 109-133 279-303 (552)
281 COG3883 Uncharacterized protei 47.1 82 0.0018 30.0 7.3 15 136-150 84-98 (265)
282 PF15369 KIAA1328: Uncharacter 47.1 75 0.0016 31.2 7.1 23 108-130 33-55 (328)
283 KOG1853 LIS1-interacting prote 47.1 96 0.0021 30.2 7.7 49 108-156 133-181 (333)
284 KOG0288 WD40 repeat protein Ti 47.0 1.1E+02 0.0025 31.2 8.5 22 110-131 29-50 (459)
285 PF07061 Swi5: Swi5; InterPro 46.9 1.4E+02 0.0031 23.5 8.3 57 105-161 4-68 (83)
286 PF05622 HOOK: HOOK protein; 46.9 6.4 0.00014 40.6 0.0 55 101-156 319-380 (713)
287 PRK09173 F0F1 ATP synthase sub 46.6 1.7E+02 0.0037 24.4 9.3 46 87-132 33-78 (159)
288 PF14282 FlxA: FlxA-like prote 46.6 70 0.0015 25.8 5.9 47 108-154 26-80 (106)
289 PF05557 MAD: Mitotic checkpoi 46.5 71 0.0015 33.1 7.4 25 107-131 509-533 (722)
290 PF06428 Sec2p: GDP/GTP exchan 46.5 64 0.0014 26.3 5.7 25 133-157 45-69 (100)
291 PF09730 BicD: Microtubule-ass 46.4 1.4E+02 0.003 32.2 9.5 59 95-153 27-90 (717)
292 PF06210 DUF1003: Protein of u 46.4 85 0.0019 25.8 6.4 10 92-101 55-64 (108)
293 PF14915 CCDC144C: CCDC144C pr 46.3 1.5E+02 0.0032 29.0 8.9 57 97-156 182-245 (305)
294 PF06305 DUF1049: Protein of u 46.3 35 0.00077 24.3 3.8 24 104-127 44-67 (68)
295 PF05335 DUF745: Protein of un 46.2 1.3E+02 0.0028 27.0 8.1 52 105-156 64-126 (188)
296 PF10046 BLOC1_2: Biogenesis o 46.2 1.5E+02 0.0032 23.5 9.3 56 95-151 30-85 (99)
297 PF05529 Bap31: B-cell recepto 46.0 1.1E+02 0.0025 26.2 7.5 32 118-152 157-188 (192)
298 PHA02562 46 endonuclease subun 45.8 98 0.0021 30.2 7.8 55 92-149 321-375 (562)
299 PRK06798 fliD flagellar cappin 45.8 96 0.0021 30.8 7.8 44 110-153 381-432 (440)
300 KOG0250 DNA repair protein RAD 45.7 96 0.0021 34.8 8.4 20 98-117 369-388 (1074)
301 PF08898 DUF1843: Domain of un 45.7 63 0.0014 24.1 5.0 35 119-153 18-52 (53)
302 PF04111 APG6: Autophagy prote 45.6 1.3E+02 0.0029 28.5 8.5 20 137-156 111-130 (314)
303 KOG0982 Centrosomal protein Nu 45.6 83 0.0018 32.3 7.4 14 137-150 309-322 (502)
304 TIGR00414 serS seryl-tRNA synt 45.5 98 0.0021 30.4 7.8 24 103-126 39-62 (418)
305 KOG0946 ER-Golgi vesicle-tethe 45.5 59 0.0013 35.8 6.7 60 92-151 655-718 (970)
306 TIGR03017 EpsF chain length de 45.4 1E+02 0.0023 29.2 7.8 46 111-156 321-366 (444)
307 PF05377 FlaC_arch: Flagella a 45.2 1.3E+02 0.0028 22.5 6.8 38 109-156 1-38 (55)
308 PF07544 Med9: RNA polymerase 45.0 40 0.00088 26.0 4.2 21 135-155 62-82 (83)
309 PF03962 Mnd1: Mnd1 family; I 45.0 1.2E+02 0.0025 26.9 7.5 51 102-152 104-155 (188)
310 PF08317 Spc7: Spc7 kinetochor 44.9 1.9E+02 0.0041 27.2 9.3 13 140-152 277-289 (325)
311 PF15035 Rootletin: Ciliary ro 44.9 1.1E+02 0.0024 27.1 7.4 23 134-156 97-119 (182)
312 PF07200 Mod_r: Modifier of ru 44.8 85 0.0018 25.8 6.3 7 94-100 42-48 (150)
313 PF09766 FimP: Fms-interacting 44.8 1.2E+02 0.0025 29.3 8.0 33 100-132 100-132 (355)
314 CHL00019 atpF ATP synthase CF0 44.7 2E+02 0.0044 24.7 9.1 46 87-132 55-100 (184)
315 PF05700 BCAS2: Breast carcino 44.7 1.2E+02 0.0027 27.0 7.8 15 116-130 176-190 (221)
316 PF00804 Syntaxin: Syntaxin; 44.6 97 0.0021 22.7 6.1 9 144-152 88-96 (103)
317 PRK05729 valS valyl-tRNA synth 44.4 59 0.0013 34.6 6.6 26 107-132 810-835 (874)
318 TIGR01242 26Sp45 26S proteasom 44.2 58 0.0013 30.5 5.9 39 111-152 2-40 (364)
319 PF14362 DUF4407: Domain of un 44.2 1.6E+02 0.0035 26.9 8.6 24 108-131 135-158 (301)
320 KOG4661 Hsp27-ERE-TATA-binding 44.0 1.5E+02 0.0033 31.9 9.2 10 118-127 649-658 (940)
321 KOG4797 Transcriptional regula 44.0 59 0.0013 27.8 5.2 43 84-130 54-96 (123)
322 KOG0995 Centromere-associated 43.9 1.2E+02 0.0026 32.0 8.3 68 89-156 253-325 (581)
323 PF10267 Tmemb_cc2: Predicted 43.9 1.1E+02 0.0023 30.6 7.8 18 139-156 276-293 (395)
324 cd07666 BAR_SNX7 The Bin/Amphi 43.8 1.4E+02 0.003 27.8 8.1 48 98-145 153-208 (243)
325 PRK10265 chaperone-modulator p 43.8 35 0.00075 27.2 3.7 25 110-134 73-97 (101)
326 PF04871 Uso1_p115_C: Uso1 / p 43.7 1.9E+02 0.0042 24.4 8.4 26 103-128 50-75 (136)
327 PF07407 Seadorna_VP6: Seadorn 43.6 47 0.001 33.2 5.2 30 109-141 33-62 (420)
328 TIGR01461 greB transcription e 43.6 86 0.0019 26.9 6.3 48 109-156 9-69 (156)
329 TIGR02209 ftsL_broad cell divi 43.3 1.1E+02 0.0024 22.7 6.2 17 135-151 41-57 (85)
330 PF14916 CCDC92: Coiled-coil d 43.2 62 0.0013 24.5 4.7 44 108-157 3-46 (60)
331 TIGR02680 conserved hypothetic 43.0 84 0.0018 35.4 7.7 50 97-151 733-782 (1353)
332 PRK13461 F0F1 ATP synthase sub 42.6 2E+02 0.0043 24.0 9.1 45 87-131 36-80 (159)
333 PF04849 HAP1_N: HAP1 N-termin 42.5 1.1E+02 0.0024 29.7 7.5 23 42-64 139-164 (306)
334 PF15290 Syntaphilin: Golgi-lo 42.2 2E+02 0.0044 28.0 9.1 14 39-52 44-57 (305)
335 PF12777 MT: Microtubule-bindi 41.9 2.7E+02 0.0059 26.3 10.0 43 88-130 222-264 (344)
336 PF12925 APP_E2: E2 domain of 41.8 1.1E+02 0.0025 27.8 7.1 44 108-151 48-100 (193)
337 PF05384 DegS: Sensor protein 41.7 1.7E+02 0.0036 25.7 7.9 34 96-129 22-55 (159)
338 COG3096 MukB Uncharacterized p 41.6 1.5E+02 0.0033 33.0 9.0 47 111-157 362-408 (1480)
339 TIGR02169 SMC_prok_A chromosom 41.5 1.6E+02 0.0036 30.8 9.1 11 144-154 474-484 (1164)
340 PF07047 OPA3: Optic atrophy 3 41.5 70 0.0015 26.7 5.4 32 100-131 97-128 (134)
341 COG3206 GumC Uncharacterized p 41.5 1.4E+02 0.0029 29.1 8.0 50 107-156 348-397 (458)
342 KOG0250 DNA repair protein RAD 41.5 1.7E+02 0.0038 32.9 9.5 27 97-124 362-388 (1074)
343 PF10481 CENP-F_N: Cenp-F N-te 41.4 87 0.0019 30.4 6.6 19 114-132 59-77 (307)
344 PRK14160 heat shock protein Gr 41.4 1E+02 0.0023 28.2 6.8 22 109-130 76-97 (211)
345 PF07227 DUF1423: Protein of u 41.4 74 0.0016 32.4 6.4 30 102-131 344-373 (446)
346 KOG2077 JNK/SAPK-associated pr 41.1 63 0.0014 34.5 6.0 17 135-151 360-376 (832)
347 PF13974 YebO: YebO-like prote 41.1 61 0.0013 25.9 4.6 32 95-132 19-50 (80)
348 PF05308 Mito_fiss_reg: Mitoch 41.0 33 0.0007 32.0 3.6 23 108-130 122-144 (253)
349 PF06818 Fez1: Fez1; InterPro 41.0 96 0.0021 28.5 6.5 45 104-151 62-106 (202)
350 PRK08475 F0F1 ATP synthase sub 41.0 2.3E+02 0.005 24.2 9.1 45 88-132 54-98 (167)
351 PF10669 Phage_Gp23: Protein g 41.0 1.7E+02 0.0036 24.8 7.4 61 90-154 58-118 (121)
352 cd07667 BAR_SNX30 The Bin/Amph 40.8 1.9E+02 0.0041 27.0 8.5 34 99-132 151-184 (240)
353 PF04799 Fzo_mitofusin: fzo-li 40.7 1.4E+02 0.0031 26.7 7.4 16 135-150 123-138 (171)
354 PF04949 Transcrip_act: Transc 40.6 2E+02 0.0043 25.8 8.1 51 94-147 96-148 (159)
355 PRK03992 proteasome-activating 40.5 99 0.0021 29.7 6.9 44 110-156 3-46 (389)
356 smart00787 Spc7 Spc7 kinetocho 40.5 2.4E+02 0.0053 26.9 9.4 57 97-153 221-285 (312)
357 PRK10698 phage shock protein P 40.5 2.3E+02 0.005 25.6 8.9 23 109-131 100-122 (222)
358 TIGR02169 SMC_prok_A chromosom 40.4 1.8E+02 0.0039 30.6 9.2 12 145-156 468-479 (1164)
359 PHA03011 hypothetical protein; 40.4 1.3E+02 0.0028 25.5 6.7 14 136-149 103-116 (120)
360 PF11853 DUF3373: Protein of u 40.3 28 0.00061 35.6 3.3 28 105-132 28-55 (489)
361 PF13805 Pil1: Eisosome compon 40.2 82 0.0018 30.0 6.2 48 85-132 142-189 (271)
362 PF10481 CENP-F_N: Cenp-F N-te 40.1 2.4E+02 0.0052 27.6 9.2 60 91-153 71-130 (307)
363 PF02344 Myc-LZ: Myc leucine z 40.1 54 0.0012 22.3 3.6 21 112-132 5-25 (32)
364 PRK00409 recombination and DNA 40.0 1.7E+02 0.0037 31.2 9.1 44 88-131 517-560 (782)
365 COG5293 Predicted ATPase [Gene 40.0 1.4E+02 0.0031 31.1 8.2 67 90-156 330-403 (591)
366 KOG0239 Kinesin (KAR3 subfamil 40.0 1.8E+02 0.0038 30.9 9.0 18 139-156 300-317 (670)
367 PRK13729 conjugal transfer pil 39.9 3.4E+02 0.0073 28.0 10.7 9 235-243 258-266 (475)
368 PRK11239 hypothetical protein; 39.8 48 0.001 30.8 4.4 14 24-37 131-144 (215)
369 KOG1318 Helix loop helix trans 39.8 53 0.0011 33.0 5.0 41 104-147 286-326 (411)
370 PRK14473 F0F1 ATP synthase sub 39.7 2.3E+02 0.0049 23.8 9.2 46 87-132 39-84 (164)
371 PF01763 Herpes_UL6: Herpesvir 39.6 70 0.0015 33.3 6.0 37 108-147 370-406 (557)
372 PF08286 Spc24: Spc24 subunit 39.5 10 0.00022 30.7 0.1 26 107-132 12-37 (118)
373 PLN02943 aminoacyl-tRNA ligase 39.5 88 0.0019 34.0 7.0 26 107-132 888-913 (958)
374 PF04012 PspA_IM30: PspA/IM30 39.4 2.6E+02 0.0056 24.3 9.8 9 98-106 85-93 (221)
375 PF14303 NAM-associated: No ap 39.3 1.7E+02 0.0036 23.8 7.2 13 89-101 59-71 (154)
376 PF04420 CHD5: CHD5-like prote 39.2 78 0.0017 27.1 5.4 26 134-159 68-93 (161)
377 PRK09413 IS2 repressor TnpA; R 39.2 53 0.0011 26.5 4.2 23 108-130 78-100 (121)
378 PF09755 DUF2046: Uncharacteri 39.0 1.2E+02 0.0026 29.6 7.1 16 136-151 52-67 (310)
379 KOG3561 Aryl-hydrocarbon recep 39.0 48 0.001 35.9 4.9 52 96-147 21-72 (803)
380 PF12999 PRKCSH-like: Glucosid 39.0 2.7E+02 0.0059 25.0 8.9 14 137-150 158-171 (176)
381 PTZ00454 26S protease regulato 38.9 1.4E+02 0.003 29.3 7.6 36 108-146 29-64 (398)
382 PF04156 IncA: IncA protein; 38.9 2.1E+02 0.0045 24.2 7.9 20 112-131 127-146 (191)
383 PRK03918 chromosome segregatio 38.8 2.3E+02 0.0049 29.4 9.6 6 4-9 17-22 (880)
384 PF09006 Surfac_D-trimer: Lung 38.8 95 0.0021 22.6 4.9 19 112-130 3-21 (46)
385 PRK00409 recombination and DNA 38.6 1.7E+02 0.0038 31.2 8.9 41 92-132 532-572 (782)
386 PF01920 Prefoldin_2: Prefoldi 38.6 1.1E+02 0.0025 23.0 5.8 21 136-156 73-93 (106)
387 COG4717 Uncharacterized conser 38.6 1.8E+02 0.0038 32.5 8.9 22 96-117 729-752 (984)
388 PF07352 Phage_Mu_Gam: Bacteri 38.4 1.5E+02 0.0033 24.7 7.0 46 108-155 10-55 (149)
389 KOG4593 Mitotic checkpoint pro 38.4 95 0.0021 33.4 6.8 62 101-162 552-623 (716)
390 PRK06664 fliD flagellar hook-a 38.3 1.4E+02 0.003 31.5 8.0 47 110-156 609-656 (661)
391 PF13870 DUF4201: Domain of un 38.3 2.5E+02 0.0054 23.9 8.9 23 134-156 147-169 (177)
392 PF15070 GOLGA2L5: Putative go 38.2 1.4E+02 0.0031 31.2 8.0 52 104-155 118-176 (617)
393 COG3879 Uncharacterized protei 38.1 2.3E+02 0.0049 26.9 8.6 25 109-133 58-82 (247)
394 PRK14872 rod shape-determining 38.0 1.8E+02 0.004 28.4 8.3 45 96-143 30-82 (337)
395 PF03961 DUF342: Protein of un 38.0 2.5E+02 0.0054 27.5 9.3 25 134-158 384-408 (451)
396 PHA00728 hypothetical protein 38.0 43 0.00092 29.2 3.6 19 115-133 5-23 (151)
397 TIGR01843 type_I_hlyD type I s 37.9 2.9E+02 0.0064 25.4 9.3 19 139-157 203-221 (423)
398 KOG1103 Predicted coiled-coil 37.5 1.5E+02 0.0032 30.2 7.7 56 95-153 225-287 (561)
399 PF04201 TPD52: Tumour protein 37.5 1.2E+02 0.0026 27.1 6.4 18 113-130 34-51 (162)
400 PRK11239 hypothetical protein; 37.5 48 0.001 30.8 4.1 15 138-152 196-210 (215)
401 PF12718 Tropomyosin_1: Tropom 37.2 2.1E+02 0.0047 24.2 7.7 21 136-156 84-104 (143)
402 PF04859 DUF641: Plant protein 36.9 1.4E+02 0.003 25.6 6.5 43 108-153 80-122 (131)
403 PF05667 DUF812: Protein of un 36.7 1.8E+02 0.0038 30.4 8.4 11 48-58 290-300 (594)
404 TIGR01005 eps_transp_fam exopo 36.6 1.9E+02 0.0041 29.9 8.5 24 133-156 377-400 (754)
405 COG1842 PspA Phage shock prote 36.5 1.6E+02 0.0035 27.0 7.3 14 137-150 125-138 (225)
406 KOG2077 JNK/SAPK-associated pr 36.3 2.3E+02 0.0049 30.6 9.0 61 95-155 344-422 (832)
407 PF10482 CtIP_N: Tumour-suppre 36.3 89 0.0019 26.8 5.2 29 103-131 91-119 (120)
408 PF11068 YlqD: YlqD protein; 36.3 2.7E+02 0.0059 23.7 8.1 49 108-156 27-84 (131)
409 PF10224 DUF2205: Predicted co 36.3 1.9E+02 0.0042 22.9 6.7 52 106-157 6-62 (80)
410 PF10779 XhlA: Haemolysin XhlA 36.2 1.8E+02 0.0039 21.6 7.3 44 107-153 5-48 (71)
411 PF15397 DUF4618: Domain of un 36.2 1.6E+02 0.0035 27.9 7.4 27 106-132 4-30 (258)
412 PF04340 DUF484: Protein of un 36.2 1.8E+02 0.0038 25.7 7.3 25 109-133 48-72 (225)
413 smart00340 HALZ homeobox assoc 36.1 82 0.0018 22.8 4.2 19 135-153 15-33 (44)
414 COG4420 Predicted membrane pro 36.0 1.1E+02 0.0024 28.0 6.1 10 92-101 109-118 (191)
415 TIGR03321 alt_F1F0_F0_B altern 35.9 3.3E+02 0.0071 24.6 9.1 42 88-129 37-78 (246)
416 PF02609 Exonuc_VII_S: Exonucl 35.9 1.6E+02 0.0034 20.8 5.9 49 108-156 3-51 (53)
417 KOG0980 Actin-binding protein 35.8 2.1E+02 0.0046 31.9 9.0 11 112-122 470-480 (980)
418 PF14988 DUF4515: Domain of un 35.5 1.8E+02 0.004 26.2 7.4 44 108-151 47-97 (206)
419 PF06698 DUF1192: Protein of u 35.5 79 0.0017 23.8 4.3 19 110-128 23-41 (59)
420 PF10359 Fmp27_WPPW: RNA pol I 35.5 72 0.0016 31.8 5.3 8 54-61 148-155 (475)
421 PF04375 HemX: HemX; InterPro 35.5 1.8E+02 0.0039 28.0 7.8 48 108-155 60-116 (372)
422 KOG2391 Vacuolar sorting prote 35.5 2.9E+02 0.0062 27.7 9.1 61 94-154 214-282 (365)
423 PF05957 DUF883: Bacterial pro 35.3 1.8E+02 0.004 22.3 6.5 21 112-132 2-22 (94)
424 TIGR03789 pdsO proteobacterial 35.1 1.7E+02 0.0036 27.2 7.2 45 108-152 84-128 (239)
425 COG4985 ABC-type phosphate tra 35.0 3.3E+02 0.0072 26.3 9.2 60 98-157 161-239 (289)
426 PF15188 CCDC-167: Coiled-coil 34.9 83 0.0018 25.3 4.5 42 84-125 24-67 (85)
427 COG0711 AtpF F0F1-type ATP syn 34.7 2.7E+02 0.0059 23.7 8.0 45 88-132 38-82 (161)
428 cd00890 Prefoldin Prefoldin is 34.7 1.6E+02 0.0035 23.0 6.2 36 110-145 8-43 (129)
429 PF15397 DUF4618: Domain of un 34.7 2.4E+02 0.0053 26.7 8.3 43 90-132 63-105 (258)
430 KOG1029 Endocytic adaptor prot 34.7 1.8E+02 0.0039 32.4 8.2 14 89-102 391-404 (1118)
431 PF11544 Spc42p: Spindle pole 34.6 2.1E+02 0.0045 22.8 6.6 9 123-131 6-14 (76)
432 TIGR01000 bacteriocin_acc bact 34.3 3.1E+02 0.0068 26.7 9.3 19 137-155 296-314 (457)
433 KOG3650 Predicted coiled-coil 34.2 1.6E+02 0.0034 25.0 6.2 43 112-157 60-102 (120)
434 KOG2070 Guanine nucleotide exc 34.2 91 0.002 32.8 5.8 30 112-141 620-649 (661)
435 PRK10636 putative ABC transpor 34.1 2.6E+02 0.0055 28.7 9.0 51 106-156 568-629 (638)
436 PF14775 NYD-SP28_assoc: Sperm 34.1 2E+02 0.0042 21.4 7.2 14 135-148 43-56 (60)
437 PLN02678 seryl-tRNA synthetase 34.0 1.9E+02 0.004 29.2 7.8 27 137-163 83-109 (448)
438 PF05600 DUF773: Protein of un 34.0 1.8E+02 0.0039 29.6 7.9 26 135-160 470-495 (507)
439 PRK10476 multidrug resistance 33.9 1.6E+02 0.0035 27.2 7.0 19 137-155 188-206 (346)
440 PF05008 V-SNARE: Vesicle tran 33.9 1.9E+02 0.0041 21.2 7.7 47 109-155 26-77 (79)
441 PRK03947 prefoldin subunit alp 33.8 1.7E+02 0.0036 23.9 6.4 27 106-132 4-30 (140)
442 PF10473 CENP-F_leu_zip: Leuci 33.7 2.8E+02 0.006 24.0 7.9 15 108-122 24-38 (140)
443 PRK04778 septation ring format 33.7 2.5E+02 0.0053 28.6 8.7 67 96-162 92-163 (569)
444 PF04999 FtsL: Cell division p 33.6 84 0.0018 24.1 4.3 16 136-151 53-68 (97)
445 PF10168 Nup88: Nuclear pore c 33.6 2.6E+02 0.0056 29.8 9.2 57 97-156 543-603 (717)
446 PRK14475 F0F1 ATP synthase sub 33.5 3E+02 0.0065 23.3 9.2 46 87-132 41-86 (167)
447 PRK01885 greB transcription el 33.5 2E+02 0.0043 24.7 7.0 47 110-156 12-71 (157)
448 PF09486 HrpB7: Bacterial type 33.4 2.4E+02 0.0051 24.9 7.5 20 112-131 83-102 (158)
449 PF05557 MAD: Mitotic checkpoi 33.4 14 0.0003 38.2 0.0 44 106-149 255-298 (722)
450 TIGR03346 chaperone_ClpB ATP-d 33.3 1.8E+02 0.0039 31.1 8.0 33 97-129 391-426 (852)
451 COG1196 Smc Chromosome segrega 33.2 2.1E+02 0.0045 31.6 8.7 10 29-38 608-617 (1163)
452 KOG3156 Uncharacterized membra 33.2 1.9E+02 0.0041 27.1 7.1 27 133-159 117-143 (220)
453 PHA03252 DNA packaging tegumen 33.0 2.4E+02 0.0053 29.7 8.7 50 96-146 36-86 (589)
454 PRK09841 cryptic autophosphory 33.0 3.2E+02 0.0069 28.6 9.6 61 95-155 254-327 (726)
455 cd00632 Prefoldin_beta Prefold 32.9 2.1E+02 0.0045 22.5 6.6 37 111-150 66-102 (105)
456 COG3166 PilN Tfp pilus assembl 32.9 1.8E+02 0.0039 26.5 7.0 67 92-158 49-115 (206)
457 PF06160 EzrA: Septation ring 32.9 2.5E+02 0.0054 28.6 8.6 66 97-162 89-159 (560)
458 PF11414 Suppressor_APC: Adeno 32.8 1.6E+02 0.0034 23.4 5.8 39 108-156 7-45 (84)
459 PF08961 DUF1875: Domain of un 32.6 15 0.00032 34.5 0.0 17 107-123 121-137 (243)
460 PRK13848 conjugal transfer pro 32.6 74 0.0016 26.4 4.0 52 109-160 4-65 (98)
461 PF11382 DUF3186: Protein of u 32.6 1.1E+02 0.0024 28.9 5.7 25 109-133 40-64 (308)
462 TIGR00606 rad50 rad50. This fa 32.5 3.4E+02 0.0074 30.4 10.2 26 134-159 264-292 (1311)
463 PRK07353 F0F1 ATP synthase sub 32.5 2.7E+02 0.0058 22.5 9.2 45 88-132 37-81 (140)
464 PF14257 DUF4349: Domain of un 32.4 2.1E+02 0.0045 25.8 7.2 28 131-158 161-188 (262)
465 PF11500 Cut12: Spindle pole b 32.3 1.5E+02 0.0033 26.1 6.1 55 86-150 83-137 (152)
466 PF11690 DUF3287: Protein of u 32.3 1.2E+02 0.0026 25.4 5.3 38 108-146 42-79 (109)
467 KOG3433 Protein involved in me 32.3 3.3E+02 0.0072 25.2 8.5 63 94-156 102-168 (203)
468 PF11180 DUF2968: Protein of u 32.3 4E+02 0.0087 24.4 9.6 58 99-156 117-178 (192)
469 PRK11519 tyrosine kinase; Prov 32.2 2.8E+02 0.0062 28.9 9.1 61 95-155 254-320 (719)
470 PF09486 HrpB7: Bacterial type 32.1 3.5E+02 0.0077 23.8 8.9 55 100-157 7-61 (158)
471 KOG3910 Helix loop helix trans 32.1 1.2E+02 0.0027 31.8 6.4 17 79-95 514-531 (632)
472 PRK10722 hypothetical protein; 32.1 1.8E+02 0.0039 27.6 6.9 18 114-131 175-192 (247)
473 PF06698 DUF1192: Protein of u 32.1 1.8E+02 0.0038 21.9 5.6 18 135-152 31-48 (59)
474 PF06637 PV-1: PV-1 protein (P 32.0 5.5E+02 0.012 26.3 10.6 39 118-159 352-390 (442)
475 PF03961 DUF342: Protein of un 32.0 3.4E+02 0.0073 26.6 9.1 18 137-154 380-397 (451)
476 COG1561 Uncharacterized stress 31.9 1.8E+02 0.0038 28.2 7.0 19 137-155 217-235 (290)
477 PF02994 Transposase_22: L1 tr 31.9 2.1E+02 0.0046 27.7 7.7 46 109-157 145-190 (370)
478 PF09744 Jnk-SapK_ap_N: JNK_SA 31.9 3.1E+02 0.0068 23.9 8.0 33 118-153 85-117 (158)
479 PRK07737 fliD flagellar cappin 31.6 2.1E+02 0.0047 28.8 7.9 47 109-155 449-496 (501)
480 PF03194 LUC7: LUC7 N_terminus 31.5 2E+02 0.0043 26.7 7.1 57 97-153 112-170 (254)
481 PF07889 DUF1664: Protein of u 31.5 2.2E+02 0.0048 24.2 6.8 39 118-156 64-106 (126)
482 PF07200 Mod_r: Modifier of ru 31.3 3E+02 0.0064 22.6 7.6 64 90-156 30-93 (150)
483 PF04350 PilO: Pilus assembly 31.2 29 0.00063 27.6 1.5 50 117-166 1-50 (144)
484 PF07851 TMPIT: TMPIT-like pro 31.0 2.3E+02 0.0049 27.8 7.7 47 107-153 3-57 (330)
485 PF04102 SlyX: SlyX; InterPro 30.9 2.2E+02 0.0047 21.3 6.0 43 107-152 10-52 (69)
486 PLN03217 transcription factor 30.9 1.1E+02 0.0025 25.1 4.7 54 98-151 2-75 (93)
487 PF06810 Phage_GP20: Phage min 30.9 1.7E+02 0.0037 25.2 6.2 50 107-156 19-68 (155)
488 PF09789 DUF2353: Uncharacteri 30.7 1.2E+02 0.0026 29.5 5.7 40 110-152 74-113 (319)
489 PF04999 FtsL: Cell division p 30.7 1.4E+02 0.003 22.9 5.1 35 109-146 36-70 (97)
490 KOG1962 B-cell receptor-associ 30.7 2.1E+02 0.0045 26.6 7.0 55 104-161 161-215 (216)
491 PF04568 IATP: Mitochondrial A 30.7 3E+02 0.0066 22.6 7.6 44 96-142 57-100 (100)
492 PF12709 Kinetocho_Slk19: Cent 30.6 2.9E+02 0.0064 22.4 7.3 48 106-156 40-87 (87)
493 KOG4593 Mitotic checkpoint pro 30.5 2.8E+02 0.006 30.1 8.7 73 84-156 200-275 (716)
494 PF12777 MT: Microtubule-bindi 30.5 2.9E+02 0.0063 26.2 8.2 50 104-156 231-280 (344)
495 PF14645 Chibby: Chibby family 30.4 1.8E+02 0.0039 24.2 6.0 41 113-156 69-109 (116)
496 KOG2467 Glycine/serine hydroxy 30.3 1E+02 0.0022 31.5 5.3 58 108-165 414-473 (477)
497 cd07429 Cby_like Chibby, a nuc 30.3 1.5E+02 0.0032 24.8 5.5 37 115-154 72-108 (108)
498 PRK11147 ABC transporter ATPas 30.2 3.3E+02 0.0072 27.7 9.0 70 86-157 555-634 (635)
499 smart00338 BRLZ basic region l 30.0 2.1E+02 0.0046 20.5 8.1 53 104-156 4-57 (65)
500 PF05837 CENP-H: Centromere pr 30.0 2.8E+02 0.006 22.3 6.9 53 107-159 16-71 (106)
No 1
>smart00338 BRLZ basic region leucin zipper.
Probab=99.48 E-value=1.2e-13 Score=100.39 Aligned_cols=62 Identities=40% Similarity=0.548 Sum_probs=57.1
Q ss_pred HHHhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 85 EKKTKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLV 149 (262)
Q Consensus 85 d~RK~KRmlsNRESARRSR~RKQaHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~ 149 (262)
++|+.||+++||+||++||+||++++.+||.+|..|..+|..|..++ ..|+.|+..|+.++.
T Consensus 3 ~~k~~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~---~~l~~e~~~lk~~~~ 64 (65)
T smart00338 3 DEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEI---ERLRRELEKLKSELE 64 (65)
T ss_pred cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhc
Confidence 56899999999999999999999999999999999999999999886 668899999988764
No 2
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=99.36 E-value=2.7e-12 Score=93.32 Aligned_cols=61 Identities=38% Similarity=0.494 Sum_probs=53.4
Q ss_pred HHHhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 85 EKKTKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLL 148 (262)
Q Consensus 85 d~RK~KRmlsNRESARRSR~RKQaHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL 148 (262)
+.|+.+|+++||+|||+||+||++++++||.+|..|..+|..|..++ ..|+.++..|+.++
T Consensus 3 ~~k~~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~---~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 3 EDKRERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKEL---EQLKKEIQSLKSEN 63 (64)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhc
Confidence 45788999999999999999999999999999999999999998885 56777888777764
No 3
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=99.14 E-value=1.5e-10 Score=82.29 Aligned_cols=46 Identities=43% Similarity=0.629 Sum_probs=41.3
Q ss_pred HHHhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 85 EKKTKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRL 131 (262)
Q Consensus 85 d~RK~KRmlsNRESARRSR~RKQaHleeLE~QV~qLraeNqqLl~rL 131 (262)
++++.||. +||+||+|||+||++++.+|+.+|..|..+|.+|..++
T Consensus 3 ~~~~~rR~-rNr~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i 48 (54)
T PF07716_consen 3 EEKRERRE-RNREAARRSRQRKKQREEELEQEVQELEEENEQLRQEI 48 (54)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777 99999999999999999999999999999999986665
No 4
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=98.77 E-value=2e-08 Score=93.03 Aligned_cols=65 Identities=32% Similarity=0.503 Sum_probs=57.6
Q ss_pred HHhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc
Q 024834 86 KKTKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIEGEIG 160 (262)
Q Consensus 86 ~RK~KRmlsNRESARRSR~RKQaHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrgri~~~iG 160 (262)
.|-.|++++|||||+|||.||-.||.+||++|..|+.+|+.| .+++..||.++.+++++|...|+
T Consensus 205 ~kleRkrlrnreaa~Kcr~rkLdrisrLEdkv~~lk~~n~~L----------~~~l~~l~~~v~e~k~~V~~hi~ 269 (279)
T KOG0837|consen 205 IKLERKRLRNREAASKCRKRKLDRISRLEDKVKTLKIYNRDL----------ASELSKLKEQVAELKQKVMEHIH 269 (279)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhH----------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 345678899999999999999999999999999999999665 67888899999999999887775
No 5
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=98.63 E-value=2e-07 Score=87.33 Aligned_cols=66 Identities=32% Similarity=0.488 Sum_probs=57.7
Q ss_pred HHHhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024834 85 EKKTKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRG 153 (262)
Q Consensus 85 d~RK~KRmlsNRESARRSR~RKQaHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrg 153 (262)
+++.+|+.+.|--||.|||+||++..+.|+.|..-|...|++|+.++ ..||.|+..||..+.+...
T Consensus 225 ~~~~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa---~~lerEI~ylKqli~e~~~ 290 (294)
T KOG4571|consen 225 EKKLRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQA---SELEREIRYLKQLILEVYK 290 (294)
T ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 44556677778888999999999999999999999999999999997 5689999999998877643
No 6
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=98.62 E-value=6.3e-08 Score=96.98 Aligned_cols=62 Identities=32% Similarity=0.342 Sum_probs=53.1
Q ss_pred cchHHHhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024834 82 ESTEKKTKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRG 153 (262)
Q Consensus 82 e~~d~RK~KRmlsNRESARRSR~RKQaHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrg 153 (262)
+.+=.||+.||+.|||||-.||+|||+.+.-||..+..|.+||++| .+||+.||.+|..+..
T Consensus 276 d~kv~krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~L----------k~ENatLk~qL~~l~~ 337 (655)
T KOG4343|consen 276 DIKVLKRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQL----------KKENATLKRQLDELVS 337 (655)
T ss_pred CHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HhhhHHHHHHHHHHhh
Confidence 3445678889999999999999999999999999999999999777 5778888888877654
No 7
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=98.56 E-value=2.3e-07 Score=85.73 Aligned_cols=68 Identities=31% Similarity=0.418 Sum_probs=52.8
Q ss_pred hHHHhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHH
Q 024834 84 TEKKTKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQG-----------QAALEAEVARLKCLLVDI 151 (262)
Q Consensus 84 ~d~RK~KRmlsNRESARRSR~RKQaHleeLE~QV~qLraeNqqLl~rLq~-----------~a~LEaEn~rLRaqL~el 151 (262)
-++|-.||+|.||-||..+|-|||++++++|.+|..|..+|+.|..+-+. +..|..++..||..|+++
T Consensus 66 ~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~ 144 (292)
T KOG4005|consen 66 WEEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAEL 144 (292)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh
Confidence 36778899999999999999999999999999999999999888765321 334444555555555554
No 8
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=98.54 E-value=9.6e-08 Score=90.08 Aligned_cols=49 Identities=37% Similarity=0.516 Sum_probs=44.5
Q ss_pred hHHHhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 84 TEKKTKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQ 132 (262)
Q Consensus 84 ~d~RK~KRmlsNRESARRSR~RKQaHleeLE~QV~qLraeNqqLl~rLq 132 (262)
...||.-|.+.||||||-+|+|||+++.-||..|+-|+.+|.-|+++|.
T Consensus 288 ~trKRevRLmKNREAARECRRKKKEYVKCLENRVAVLENQNKaLIEELK 336 (348)
T KOG3584|consen 288 ATRKREVRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKALIEELK 336 (348)
T ss_pred hhhHHHHHHHhhHHHHHHHHHhHhHHHHHHHhHHHHHhcccHHHHHHHH
Confidence 3567889999999999999999999999999999999999988877764
No 9
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=98.36 E-value=3.1e-07 Score=90.38 Aligned_cols=72 Identities=28% Similarity=0.331 Sum_probs=61.7
Q ss_pred cchHHHhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024834 82 ESTEKKTKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 82 e~~d~RK~KRmlsNRESARRSR~RKQaHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrgri~ 156 (262)
|....||.||+++|-+||.-||+|||.+++-||..|..-.++|+.|.++++ .||.+|.-|-+||..++..+.
T Consensus 246 EEriLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~---~Le~~N~sLl~qL~klQt~v~ 317 (472)
T KOG0709|consen 246 EERILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVE---ELELSNRSLLAQLKKLQTLVI 317 (472)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHH---HHhhccHHHHHHHHHHHHHHh
Confidence 445678999999999999999999999999999999999999999999974 577777777777777655443
No 10
>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell. MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.
Probab=97.86 E-value=8e-08 Score=74.86 Aligned_cols=48 Identities=33% Similarity=0.476 Sum_probs=41.8
Q ss_pred hHHHhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 84 TEKKTKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRL 131 (262)
Q Consensus 84 ~d~RK~KRmlsNRESARRSR~RKQaHleeLE~QV~qLraeNqqLl~rL 131 (262)
.+.|.+||.+.||.||+++|.||..++.+||.++..|+.+..+|...+
T Consensus 27 ~~lK~~RRr~KNR~~A~~cR~rk~~~~~~Le~e~~~l~~~~~~L~~e~ 74 (92)
T PF03131_consen 27 AELKQRRRRLKNRGYAQNCRKRKLDQIEELEEEIEQLRQEIEQLQQEL 74 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999999999999999998887776665543
No 11
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=97.46 E-value=0.00039 Score=63.81 Aligned_cols=58 Identities=34% Similarity=0.506 Sum_probs=45.7
Q ss_pred hccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 89 KKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLV 149 (262)
Q Consensus 89 ~KRmlsNRESARRSR~RKQaHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~ 149 (262)
+-|+-+|=+||||||.+.+...++...+|..|.+||+.|..++ ..|+.|+..||..+.
T Consensus 196 ~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v---~~l~~el~~~~~~~~ 253 (269)
T KOG3119|consen 196 KERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQV---EQLKKELATLRRLFL 253 (269)
T ss_pred HHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 4456678899999999999999999999999999998886664 445555555555443
No 12
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=97.10 E-value=0.0014 Score=67.00 Aligned_cols=67 Identities=25% Similarity=0.364 Sum_probs=59.3
Q ss_pred HhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024834 87 KTKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 87 RK~KRmlsNRESARRSR~RKQaHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrgri~ 156 (262)
|-.||+-.||-||.+.|.||-.-|.+||.+|..|+.+..+|++. ...++.++-+++.++.+|-..+=
T Consensus 490 rDIRRRgKNkvAAQnCRKRKLd~I~nLE~ev~~l~~eKeqLl~E---r~~~d~~L~~~kqqls~L~~~Vf 556 (604)
T KOG3863|consen 490 RDIRRRGKNKVAAQNCRKRKLDCILNLEDEVEKLQKEKEQLLRE---RDELDSTLGVMKQQLSELYQEVF 556 (604)
T ss_pred hccccccccchhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45689999999999999999999999999999999999999877 57788999999999998755443
No 13
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=96.71 E-value=0.012 Score=50.35 Aligned_cols=64 Identities=27% Similarity=0.347 Sum_probs=50.3
Q ss_pred chHHHhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024834 83 STEKKTKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 83 ~~d~RK~KRmlsNRESARRSR~RKQaHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrgri~ 156 (262)
-...|.+||.|.||-=|.-+|-|+-.+-.+||.+..+|..+..+| ..||++++.++..++.+.+
T Consensus 49 VvrlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~~L----------~~e~s~~~~E~da~k~k~e 112 (135)
T KOG4196|consen 49 VVRLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVEKL----------KEENSRLRRELDAYKSKYE 112 (135)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHH
Confidence 346789999999999999999999999999999998888877665 4455555555555555554
No 14
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=96.00 E-value=0.034 Score=42.34 Aligned_cols=53 Identities=23% Similarity=0.205 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccc
Q 024834 108 ARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIEGEIGSFP 163 (262)
Q Consensus 108 aHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrgri~~~iG~fp 163 (262)
++++.|..-..+|+.+|..|..++ +.+.+|.+.|+.+....+.||+.-|..+|
T Consensus 7 ~kle~Li~~~~~L~~EN~~Lr~q~---~~~~~ER~~L~ekne~Ar~rvEamI~RLk 59 (65)
T TIGR02449 7 AQVEHLLEYLERLKSENRLLRAQE---KTWREERAQLLEKNEQARQKVEAMITRLK 59 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 567888888899999999998885 77899999999999999999998888776
No 15
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=94.93 E-value=0.12 Score=46.52 Aligned_cols=49 Identities=35% Similarity=0.213 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 102 YREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVD 150 (262)
Q Consensus 102 SR~RKQaHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~e 150 (262)
.--..-..+.+|.+|.++|++||.+|..++.....+++|+.+||.+|..
T Consensus 63 ~~~~~~~~~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~~ 111 (276)
T PRK13922 63 GVFESLASLFDLREENEELKKELLELESRLQELEQLEAENARLRELLNL 111 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3445567788999999999999999999998888999999999997653
No 16
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=94.77 E-value=0.14 Score=39.24 Aligned_cols=49 Identities=24% Similarity=0.245 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccc
Q 024834 110 TASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIEGEIGS 161 (262)
Q Consensus 110 leeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrgri~~~iG~ 161 (262)
++-|.-+|.+|+.+|..|.. .+..|+.||.+|+.+-.....||++-+|-
T Consensus 20 i~~Lq~e~eeLke~n~~L~~---e~~~L~~en~~L~~e~~~~~~rl~~LL~k 68 (72)
T PF06005_consen 20 IALLQMENEELKEKNNELKE---ENEELKEENEQLKQERNAWQERLRSLLGK 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555555555542 36789999999999999999999876664
No 17
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=94.15 E-value=0.14 Score=47.33 Aligned_cols=43 Identities=28% Similarity=0.237 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 024834 108 ARTASLEDEVVRLRAVNQQLLKRLQGQAA-LEAEVARLKCLLVD 150 (262)
Q Consensus 108 aHleeLE~QV~qLraeNqqLl~rLq~~a~-LEaEn~rLRaqL~e 150 (262)
..+.+|++|-++||+++.+|..+++.... +++||++||.+|.-
T Consensus 66 ~~~~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL~~ 109 (283)
T TIGR00219 66 KDVNNLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELLNS 109 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 35566777888888888777666665444 99999999996543
No 18
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=93.77 E-value=0.32 Score=39.79 Aligned_cols=46 Identities=35% Similarity=0.382 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024834 108 ARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 108 aHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrgri~ 156 (262)
..+.+||.++.+|-++-.+|...+. .|..||++||-+...||.+|.
T Consensus 8 ~~l~~le~~l~~l~~~~~~LK~~~~---~l~EEN~~L~~EN~~Lr~~l~ 53 (107)
T PF06156_consen 8 DRLDQLEQQLGQLLEELEELKKQLQ---ELLEENARLRIENEHLRERLE 53 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 4577788888888777777777763 445555555555555555554
No 19
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=92.28 E-value=0.75 Score=34.58 Aligned_cols=43 Identities=28% Similarity=0.533 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhh
Q 024834 112 SLEDEVVRLRAVNQQLLKRLQG----QAALEAEVARLKCLLVDIRGR 154 (262)
Q Consensus 112 eLE~QV~qLraeNqqLl~rLq~----~a~LEaEn~rLRaqL~elrgr 154 (262)
.|.+++.+.+..|..+..+|++ +..|++++..|+.++.+++.+
T Consensus 15 ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~~ 61 (61)
T PF08826_consen 15 AIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRSR 61 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 4667888999999999999985 778999999999999988764
No 20
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=92.08 E-value=0.78 Score=37.96 Aligned_cols=44 Identities=25% Similarity=0.218 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Q 024834 108 ARTASLEDEVVRLRAVNQQLLKRLQG----QAALEAEVARLKCLLVDI 151 (262)
Q Consensus 108 aHleeLE~QV~qLraeNqqLl~rLq~----~a~LEaEn~rLRaqL~el 151 (262)
..+.+||.++.+|-++-.+|...+.. ++.|+-||..||..|.++
T Consensus 8 d~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 8 DALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35677777777777777777777642 445555555555554444
No 21
>PRK10884 SH3 domain-containing protein; Provisional
Probab=91.90 E-value=0.85 Score=40.97 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 107 KARTASLEDEVVRLRAVNQQLLKRL 131 (262)
Q Consensus 107 QaHleeLE~QV~qLraeNqqLl~rL 131 (262)
+..+++++.++.+|+++|++|.++|
T Consensus 124 ~~~~~~~~~~~~~L~~~n~~L~~~l 148 (206)
T PRK10884 124 QQKVAQSDSVINGLKEENQKLKNQL 148 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555566666665554
No 22
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=91.65 E-value=1.3 Score=33.14 Aligned_cols=48 Identities=19% Similarity=0.223 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 024834 107 KARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIEG 157 (262)
Q Consensus 107 QaHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrgri~~ 157 (262)
.+++.+||.+++.+.....+|-..+. ....++.+|+.++..|..||..
T Consensus 3 e~Ri~~LE~~la~qe~~ie~Ln~~v~---~Qq~~I~~L~~~l~~L~~rl~~ 50 (69)
T PF04102_consen 3 EERIEELEIKLAFQEDTIEELNDVVT---EQQRQIDRLQRQLRLLRERLRE 50 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999888888877763 3456777888888888887774
No 23
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=91.38 E-value=0.33 Score=42.77 Aligned_cols=46 Identities=26% Similarity=0.309 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024834 110 TASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRI 155 (262)
Q Consensus 110 leeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrgri 155 (262)
|+++|.+.++--+.|.-|..+|++-..|..++.|||.++.||+.-|
T Consensus 2 LeD~EsklN~AIERnalLE~ELdEKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESELDEKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH--------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999988889999999998888876654
No 24
>PRK10884 SH3 domain-containing protein; Provisional
Probab=91.05 E-value=1.8 Score=38.94 Aligned_cols=67 Identities=16% Similarity=0.231 Sum_probs=41.7
Q ss_pred ccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHhhhh
Q 024834 90 KRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQG--------QAALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 90 KRmlsNRESARRSR~RKQaHleeLE~QV~qLraeNqqLl~rLq~--------~a~LEaEn~rLRaqL~elrgri~ 156 (262)
.+.+++-.++|--=.+=++++++|+++++.++.+.++....++. ...|++||+.|+.++..++.+++
T Consensus 82 ~~~Ls~~p~~~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~ 156 (206)
T PRK10884 82 LKQLSTTPSLRTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVD 156 (206)
T ss_pred HHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666555556677777777777776665555544442 23477777777777776655544
No 25
>PRK00295 hypothetical protein; Provisional
Probab=90.93 E-value=1.7 Score=32.85 Aligned_cols=48 Identities=21% Similarity=0.178 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 024834 107 KARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIEG 157 (262)
Q Consensus 107 QaHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrgri~~ 157 (262)
.+++.+||.+++.+.....+|-+.|. ....++.+|+.++..|..|+..
T Consensus 4 e~Ri~~LE~kla~qE~tie~Ln~~v~---~Qq~~I~~L~~ql~~L~~rl~~ 51 (68)
T PRK00295 4 EERVTELESRQAFQDDTIQALNDVLV---EQQRVIERLQLQMAALIKRQEE 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 35699999999999888887777763 3356667777777777777764
No 26
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=90.54 E-value=1.4 Score=35.06 Aligned_cols=53 Identities=25% Similarity=0.315 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhhhhhcccc
Q 024834 110 TASLEDEVVRLRAVNQQLLKRLQG----QAALEAEVARLKCLLVDIRGRIEGEIGSF 162 (262)
Q Consensus 110 leeLE~QV~qLraeNqqLl~rLq~----~a~LEaEn~rLRaqL~elrgri~~~iG~f 162 (262)
+.=|.-+|..|+.+|..|...++. ...|+.||..||.+...-..||++-+|-+
T Consensus 20 I~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGkm 76 (79)
T PRK15422 20 ITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRM 76 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444666788888888888888764 56899999999999999999998877754
No 27
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=90.42 E-value=0.049 Score=52.47 Aligned_cols=61 Identities=34% Similarity=0.422 Sum_probs=48.5
Q ss_pred cchHHHhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 82 ESTEKKTKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARL 144 (262)
Q Consensus 82 e~~d~RK~KRmlsNRESARRSR~RKQaHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rL 144 (262)
++.++|++|=..+||.||-|+|.|||.....|+.+...+..+|.+|. +..+..|..++..+
T Consensus 280 ~~p~~~~~~~lern~~aas~~r~~~k~~~~~~~~~~~~~~~~n~~l~--~~~~~~l~~~~~~~ 340 (395)
T KOG1414|consen 280 EDPDERRRRFLERNRAAASRCRQKKKVWVLSLEKKAEELSSENGQLL--LNEVELLRNEVKQL 340 (395)
T ss_pred CCchhhhhhhhhhhhhhhccccCCcccccccccccccchhhhhcccc--cchhhHHHhHHhhh
Confidence 34456667778899999999999999999999999999999999997 54444444444444
No 28
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=90.33 E-value=1.3 Score=36.23 Aligned_cols=44 Identities=25% Similarity=0.320 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024834 107 KARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRG 153 (262)
Q Consensus 107 QaHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrg 153 (262)
.++|..|-+++..|+.....|+++ ++.|.-||..||..|.++..
T Consensus 14 e~~l~~l~~~~~~LK~~~~~l~EE---N~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 14 EQQLGQLLEELEELKKQLQELLEE---NARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhc
Confidence 467888888888888888888776 89999999999999999877
No 29
>PHA03155 hypothetical protein; Provisional
Probab=90.29 E-value=1.4 Score=37.24 Aligned_cols=49 Identities=29% Similarity=0.367 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHH-HHhhhhh
Q 024834 109 RTASLEDEVVRLRAVNQQLLKRLQG--------------QAALEAEVARLKCLLVD-IRGRIEG 157 (262)
Q Consensus 109 HleeLE~QV~qLraeNqqLl~rLq~--------------~a~LEaEn~rLRaqL~e-lrgri~~ 157 (262)
-+|+|+.++.+|+.||..|.++|.. .+.+-+-+.+|-.+.++ |+.||..
T Consensus 9 tvEeLaaeL~kL~~ENK~LKkkl~~~~~p~d~~LT~~qKea~I~s~v~~Lt~~A~~KIe~kVrk 72 (115)
T PHA03155 9 DVEELEKELQKLKIENKALKKKLLQHGNPEDELLTPAQKDAIINSLVNKLTKKAEEKIRERVLK 72 (115)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHccCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999999952 33444455566554443 5555554
No 30
>PRK04325 hypothetical protein; Provisional
Probab=90.17 E-value=2 Score=32.85 Aligned_cols=47 Identities=13% Similarity=0.099 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 024834 108 ARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIEG 157 (262)
Q Consensus 108 aHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrgri~~ 157 (262)
+++.+||.+|+.+.....+|-+.|. .-..++.+|+.++..|..||..
T Consensus 9 ~Ri~~LE~klAfQE~tIe~LN~vv~---~Qq~~I~~L~~ql~~L~~rl~~ 55 (74)
T PRK04325 9 DRITELEIQLAFQEDLIDGLNATVA---RQQQTLDLLQAQLRLLYQQMRD 55 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 4599999999999888888877763 3345667777777777777764
No 31
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=90.17 E-value=1.8 Score=36.63 Aligned_cols=48 Identities=19% Similarity=0.329 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHhhhhh
Q 024834 110 TASLEDEVVRLRAVNQQLLKRLQG------QAALEAEVARLKCLLVDIRGRIEG 157 (262)
Q Consensus 110 leeLE~QV~qLraeNqqLl~rLq~------~a~LEaEn~rLRaqL~elrgri~~ 157 (262)
+.+|++|+..|+.++..|..+|.. ...|..++..|+.++..+..||..
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~ 134 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEK 134 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555542 345677777777777777777764
No 32
>PRK04406 hypothetical protein; Provisional
Probab=89.87 E-value=2.2 Score=32.91 Aligned_cols=48 Identities=13% Similarity=0.209 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 024834 107 KARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIEG 157 (262)
Q Consensus 107 QaHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrgri~~ 157 (262)
.+++.+||.+++.+.....+|-+.|. ....++.+|+.++..|..|+..
T Consensus 10 e~Ri~~LE~~lAfQE~tIe~LN~~v~---~Qq~~I~~L~~ql~~L~~rl~~ 57 (75)
T PRK04406 10 EERINDLECQLAFQEQTIEELNDALS---QQQLLITKMQDQMKYVVGKVKN 57 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHh
Confidence 35788999999988888888777763 3456778888888888888864
No 33
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.84 E-value=1.7 Score=34.33 Aligned_cols=53 Identities=26% Similarity=0.324 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhhhhhcccc
Q 024834 110 TASLEDEVVRLRAVNQQLLKRLQG----QAALEAEVARLKCLLVDIRGRIEGEIGSF 162 (262)
Q Consensus 110 leeLE~QV~qLraeNqqLl~rLq~----~a~LEaEn~rLRaqL~elrgri~~~iG~f 162 (262)
+.-|.-+|..|+..|++|-...+. ..+|+.|+..|+.+-..-..||..-+|-|
T Consensus 20 I~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLLGkm 76 (79)
T COG3074 20 ITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALLGKM 76 (79)
T ss_pred HHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 445677888999999999888773 45899999999999998888988877754
No 34
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=89.77 E-value=2.2 Score=36.10 Aligned_cols=27 Identities=30% Similarity=0.421 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 106 KKARTASLEDEVVRLRAVNQQLLKRLQ 132 (262)
Q Consensus 106 KQaHleeLE~QV~qLraeNqqLl~rLq 132 (262)
|..-+++|..|+.+|+.||..|.++|.
T Consensus 1 k~~t~EeLaaeL~kLqmENk~LKkkl~ 27 (118)
T PF05812_consen 1 KDMTMEELAAELQKLQMENKALKKKLR 27 (118)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999999999996
No 35
>PRK02793 phi X174 lysis protein; Provisional
Probab=89.75 E-value=2.4 Score=32.36 Aligned_cols=48 Identities=25% Similarity=0.270 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 024834 107 KARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIEG 157 (262)
Q Consensus 107 QaHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrgri~~ 157 (262)
.+++.+||.+++.+.....+|-+.|. ....++.+|+.++..|..||..
T Consensus 7 e~Ri~~LE~~lafQe~tIe~Ln~~v~---~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 7 EARLAELESRLAFQEITIEELNVTVT---AHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHh
Confidence 46899999999999888888877763 3356677777777777777764
No 36
>PHA03162 hypothetical protein; Provisional
Probab=89.54 E-value=0.93 Score=39.10 Aligned_cols=29 Identities=24% Similarity=0.422 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 104 EKKKARTASLEDEVVRLRAVNQQLLKRLQ 132 (262)
Q Consensus 104 ~RKQaHleeLE~QV~qLraeNqqLl~rLq 132 (262)
-+|+.-+|+|..|+.+|+.||..|.++|.
T Consensus 9 pk~~~tmEeLaaeL~kLqmENK~LKkkl~ 37 (135)
T PHA03162 9 PKAQPTMEDLAAEIAKLQLENKALKKKIK 37 (135)
T ss_pred CccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778899999999999999999999994
No 37
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=89.37 E-value=1 Score=45.48 Aligned_cols=49 Identities=14% Similarity=0.078 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhhh
Q 024834 108 ARTASLEDEVVRLRAVNQQLLKRLQG----QAALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 108 aHleeLE~QV~qLraeNqqLl~rLq~----~a~LEaEn~rLRaqL~elrgri~ 156 (262)
..+++||.|++.||.+.+.+.+.+++ ...+|+|+.+|+.|+..+.....
T Consensus 76 ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~~~~~ 128 (475)
T PRK13729 76 VTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALGANPV 128 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 37788899999988777754444432 34788999999999865555433
No 38
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=89.25 E-value=1.7 Score=40.27 Aligned_cols=61 Identities=13% Similarity=0.253 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccc
Q 024834 98 AVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIEGEIGS 161 (262)
Q Consensus 98 SARRSR~RKQaHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrgri~~~iG~ 161 (262)
.=-+|++|+++..+-+...-.+=|....++..|+ ..||.||+.||.++.+|+..|..-...
T Consensus 191 ~~~~y~err~rNN~A~~kSR~~~k~~~~e~~~r~---~~leken~~lr~~v~~l~~el~~~~~~ 251 (269)
T KOG3119|consen 191 KDPEYKERRRRNNEAVRKSRDKRKQKEDEMAHRV---AELEKENEALRTQVEQLKKELATLRRL 251 (269)
T ss_pred CCHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456888888888887777777677777777775 678899999999888888877755443
No 39
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=89.23 E-value=1.2 Score=41.51 Aligned_cols=49 Identities=27% Similarity=0.078 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 102 YREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVD 150 (262)
Q Consensus 102 SR~RKQaHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~e 150 (262)
...-+-+...+|..|-.+||+++.++...+.....|++||.+||..|..
T Consensus 60 ~~~~~~~~~~~~~~en~~Lk~~l~~~~~~~~~~~~l~~EN~~Lr~lL~~ 108 (284)
T COG1792 60 GVLEFLKSLKDLALENEELKKELAELEQLLEEVESLEEENKRLKELLDF 108 (284)
T ss_pred hHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3445667778888888888888888888888888899999999987654
No 40
>PRK02119 hypothetical protein; Provisional
Probab=89.13 E-value=2.8 Score=32.12 Aligned_cols=49 Identities=14% Similarity=0.195 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 024834 106 KKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIEG 157 (262)
Q Consensus 106 KQaHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrgri~~ 157 (262)
-.+++.+||.+++.+.....+|-+.|. .-..++.+|+.++..|..||..
T Consensus 7 ~e~Ri~~LE~rla~QE~tie~LN~~v~---~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 7 LENRIAELEMKIAFQENLLEELNQALI---EQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHh
Confidence 356899999999988888777777663 3356667777778777777764
No 41
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=89.04 E-value=1.5 Score=35.41 Aligned_cols=33 Identities=30% Similarity=0.325 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 104 EKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKC 146 (262)
Q Consensus 104 ~RKQaHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRa 146 (262)
.+.++++++++.++++|+++|++| +.|+..|+.
T Consensus 30 ~~l~~q~~~~~~e~~~l~~~n~~L----------~~eI~~L~~ 62 (105)
T PRK00888 30 WRVNDQVAAQQQTNAKLKARNDQL----------FAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHhhC
Confidence 344555566666666666666554 555666655
No 42
>PRK00736 hypothetical protein; Provisional
Probab=88.33 E-value=3.5 Score=31.13 Aligned_cols=48 Identities=19% Similarity=0.177 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 024834 107 KARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIEG 157 (262)
Q Consensus 107 QaHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrgri~~ 157 (262)
.+++.+||.+++.+.....+|-+.|. .-..++.+|+.++..|..|+..
T Consensus 4 e~Ri~~LE~klafqe~tie~Ln~~v~---~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 4 EERLTELEIRVAEQEKTIEELSDQLA---EQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 35699999999999888877777663 3345667777777777777764
No 43
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=88.26 E-value=1.5 Score=32.22 Aligned_cols=46 Identities=28% Similarity=0.232 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024834 105 KKKARTASLEDEVVRLRA----VNQQLLKRLQGQAALEAEVARLKCLLVDIRG 153 (262)
Q Consensus 105 RKQaHleeLE~QV~qLra----eNqqLl~rLq~~a~LEaEn~rLRaqL~elrg 153 (262)
|++.+|++||.++.-=+. ++.....+ ...|++||..||++|.-++.
T Consensus 1 kw~~Rl~ELe~klkaerE~R~~d~~~a~~r---l~~l~~EN~~Lr~eL~~~r~ 50 (52)
T PF12808_consen 1 KWLLRLEELERKLKAEREARSLDRSAARKR---LSKLEGENRLLRAELERLRS 50 (52)
T ss_pred CHHHHHHHHHHHHHHhHHhccCCchhHHHH---HHHHHHHHHHHHHHHHHHhh
Confidence 466777777766544331 12233333 36788999999998876654
No 44
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=87.91 E-value=2.4 Score=35.11 Aligned_cols=48 Identities=27% Similarity=0.198 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhhhhh
Q 024834 111 ASLEDEVVRLRAVNQQLLKRLQG----QAALEAEVARLKCLLVDIRGRIEGE 158 (262)
Q Consensus 111 eeLE~QV~qLraeNqqLl~rLq~----~a~LEaEn~rLRaqL~elrgri~~~ 158 (262)
.+|=++|.+|.....+|.+.|.. ...|..||.+||-+...||.+|...
T Consensus 4 ~elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 4 KEIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46788899999999999988864 5678899999999999999998853
No 45
>PF15058 Speriolin_N: Speriolin N terminus
Probab=87.43 E-value=3.1 Score=37.95 Aligned_cols=38 Identities=29% Similarity=0.266 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 111 ASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIR 152 (262)
Q Consensus 111 eeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elr 152 (262)
+-|.+|+++|=.||.+|++. ..|..||..||..|.+..
T Consensus 8 eGlrhqierLv~ENeeLKKl----VrLirEN~eLksaL~ea~ 45 (200)
T PF15058_consen 8 EGLRHQIERLVRENEELKKL----VRLIRENHELKSALGEAC 45 (200)
T ss_pred HHHHHHHHHHHhhhHHHHHH----HHHHHHHHHHHHHHHHhh
Confidence 55788999999999999887 468899999999887753
No 46
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=87.36 E-value=2.1 Score=36.00 Aligned_cols=47 Identities=26% Similarity=0.324 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 103 REKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIR 152 (262)
Q Consensus 103 R~RKQaHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elr 152 (262)
|.-=|++|+.||.|++.++..+..|.+|| ..||..+...|+....+.
T Consensus 27 RaEmkarIa~LEGE~r~~e~l~~dL~rrI---kMLE~aLkqER~k~~~~~ 73 (134)
T PF08232_consen 27 RAEMKARIAFLEGERRGQENLKKDLKRRI---KMLEYALKQERAKYKKLK 73 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhccc
Confidence 44457899999999999999999999997 788998888888766543
No 47
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=86.97 E-value=3.7 Score=34.79 Aligned_cols=50 Identities=26% Similarity=0.405 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhhh
Q 024834 107 KARTASLEDEVVRLRAVNQQLLKRLQG----QAALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 107 QaHleeLE~QV~qLraeNqqLl~rLq~----~a~LEaEn~rLRaqL~elrgri~ 156 (262)
+.+++.|+.++++|...+.++...|.. +..||.++..|..+|.++...+.
T Consensus 13 ~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~le 66 (143)
T PF12718_consen 13 QDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLE 66 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888888887777763 56788888888888887776665
No 48
>PF03993 DUF349: Domain of Unknown Function (DUF349); InterPro: IPR007139 This motif is found singly or as up to five tandem repeats in a small set of bacterial proteins. There are two or three alpha-helices, and possibly a beta-strand.
Probab=86.73 E-value=6.9 Score=28.36 Aligned_cols=66 Identities=15% Similarity=0.203 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccc
Q 024834 96 REAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIEGEIGSFP 163 (262)
Q Consensus 96 RESARRSR~RKQaHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrgri~~~iG~fp 163 (262)
|++...+..|++++.+++..+...--+.-+.|+.++...+... +...+...+.+|..+... +|..|
T Consensus 8 ~~a~~~~~~~~~~~~~~~~~~~~~n~~~K~~Li~~~~~l~~~~-d~~~~~~~~k~l~~~Wk~-iG~vp 73 (77)
T PF03993_consen 8 RAACDAFFDRRKEFFEEQDAEREENLEKKEALIEEAEALAESE-DWKEAAEEIKELQQEWKE-IGPVP 73 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-cHHHHHHHHHHHHHHHHH-cCCCC
Confidence 5677888999999999999999888888888988886533211 144455555666666554 66555
No 49
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=86.28 E-value=4.8 Score=30.13 Aligned_cols=50 Identities=24% Similarity=0.240 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc
Q 024834 108 ARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIEGEIG 160 (262)
Q Consensus 108 aHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrgri~~~iG 160 (262)
+.+++|..+|..|...-.+|...+ ..+.+++...+.+.+....||+--..
T Consensus 3 akid~Ls~dVq~L~~kvdqLs~dv---~~lr~~v~~ak~EAaRAN~RlDN~a~ 52 (56)
T PF04728_consen 3 AKIDQLSSDVQTLNSKVDQLSSDV---NALRADVQAAKEEAARANQRLDNIAQ 52 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhHh
Confidence 468889999999988888887665 45667777777777777778775443
No 50
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=85.96 E-value=2.9 Score=42.31 Aligned_cols=48 Identities=33% Similarity=0.401 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHhhhh
Q 024834 109 RTASLEDEVVRLRAVNQQLLKRLQG-------------------QAALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 109 HleeLE~QV~qLraeNqqLl~rLq~-------------------~a~LEaEn~rLRaqL~elrgri~ 156 (262)
+++.|+.|-+.|++||++|.+|.+. ...|..|..+|+.++.+|..||+
T Consensus 74 ~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l~ 140 (472)
T TIGR03752 74 RLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQRRLA 140 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4677888888888888888775531 12334445555556666666664
No 51
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=85.70 E-value=5.7 Score=32.02 Aligned_cols=51 Identities=24% Similarity=0.311 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHhhhh
Q 024834 106 KKARTASLEDEVVRLRAVNQQLLKRLQG------QAALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 106 KQaHleeLE~QV~qLraeNqqLl~rLq~------~a~LEaEn~rLRaqL~elrgri~ 156 (262)
|++.++.|++.+.++..--+.|..++.. ...|+-+++.+|..+..+.++|+
T Consensus 33 ~~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~ 89 (106)
T PF10805_consen 33 KREDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQ 89 (106)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4556666666666666655666665542 34555555555555555555554
No 52
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=85.66 E-value=3.7 Score=34.59 Aligned_cols=46 Identities=24% Similarity=0.231 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 024834 109 RTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIEG 157 (262)
Q Consensus 109 HleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrgri~~ 157 (262)
.+.+||.++..|-++...|.+.| ..+-.||..||-+...||.||..
T Consensus 9 ~v~~le~~l~~l~~el~~lK~~l---~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 9 QVDNLEEQLGVLLAELGGLKQHL---GSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhHHHHhhHHHHHHHhCC
Confidence 56778888888888777777776 45677888888888888888765
No 53
>PRK00846 hypothetical protein; Provisional
Probab=85.37 E-value=5.9 Score=31.13 Aligned_cols=51 Identities=20% Similarity=0.090 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 024834 106 KKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIEGEI 159 (262)
Q Consensus 106 KQaHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrgri~~~i 159 (262)
-.+++++||.+++.......+|-+.| .....++.+|+.++.-|.+|+..-.
T Consensus 11 le~Ri~~LE~rlAfQe~tIe~LN~~v---~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 11 LEARLVELETRLSFQEQALTELSEAL---ADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35789999999988887777776665 3346778888888888888887543
No 54
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=85.04 E-value=8.5 Score=38.44 Aligned_cols=68 Identities=18% Similarity=0.219 Sum_probs=47.6
Q ss_pred HHHhhccCcccHHHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 85 EKKTKKRPLGNREAVRKYREKKKARTASLEDE-----------------------VVRLRAVNQQLLKRLQGQAALEAEV 141 (262)
Q Consensus 85 d~RK~KRmlsNRESARRSR~RKQaHleeLE~Q-----------------------V~qLraeNqqLl~rLq~~a~LEaEn 141 (262)
++|.+||+..--|==||.|.+=..+|.+|-.- +.+|+.++++..+..+....|+..+
T Consensus 227 ~~rdr~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~~~E~~~rqk~le~~n 306 (411)
T KOG1318|consen 227 LERDRRKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQRARELENRQKKLESTN 306 (411)
T ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHhHH
Confidence 56777778888888899998888888888654 3567777776666666666666666
Q ss_pred HHHHHHHHHHH
Q 024834 142 ARLKCLLVDIR 152 (262)
Q Consensus 142 ~rLRaqL~elr 152 (262)
..|+.+..+|.
T Consensus 307 ~~L~~rieeLk 317 (411)
T KOG1318|consen 307 QELALRIEELK 317 (411)
T ss_pred HHHHHHHHHHH
Confidence 66665555543
No 55
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=85.04 E-value=3.1 Score=43.48 Aligned_cols=44 Identities=20% Similarity=0.246 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHH
Q 024834 108 ARTASLEDEVVRLRAVNQQLLKRLQG--------------QAALEAEVARLKCLLVDI 151 (262)
Q Consensus 108 aHleeLE~QV~qLraeNqqLl~rLq~--------------~a~LEaEn~rLRaqL~el 151 (262)
.+..+|+.++.+|+.++..|..+|.. ..+++.++.+|+-.|.+-
T Consensus 436 ~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~ 493 (652)
T COG2433 436 EENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEK 493 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555531 334556667776666653
No 56
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=84.68 E-value=6.2 Score=41.42 Aligned_cols=71 Identities=21% Similarity=0.373 Sum_probs=43.8
Q ss_pred cHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHH---HHHHHHHhhh
Q 024834 95 NREAVRKY-REKKKARTASLEDEVVRLRAVNQQLLKRLQGQA---------------ALEAEVARLK---CLLVDIRGRI 155 (262)
Q Consensus 95 NRESARRS-R~RKQaHleeLE~QV~qLraeNqqLl~rLq~~a---------------~LEaEn~rLR---aqL~elrgri 155 (262)
..+..|.+ |+ -++.++.|...+.-|+..|++|.+.|...- .||--...|+ .++.+|..+|
T Consensus 574 ~~~~lr~~~~e-~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki 652 (697)
T PF09726_consen 574 ELQELRKYEKE-SEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKI 652 (697)
T ss_pred HHHHHHHHHhh-hhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444554 33 466789999999999999999998886311 1111112222 3455567777
Q ss_pred hhhcccccccc
Q 024834 156 EGEIGSFPYQK 166 (262)
Q Consensus 156 ~~~iG~fp~qk 166 (262)
..-+.++|...
T Consensus 653 ~~~~av~p~~~ 663 (697)
T PF09726_consen 653 AQLLAVMPSDS 663 (697)
T ss_pred HHHHhcCCccc
Confidence 77777777543
No 57
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=84.20 E-value=2.6 Score=42.63 Aligned_cols=22 Identities=18% Similarity=0.276 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024834 109 RTASLEDEVVRLRAVNQQLLKR 130 (262)
Q Consensus 109 HleeLE~QV~qLraeNqqLl~r 130 (262)
++.+|+.++..|..+|+.|+++
T Consensus 67 ~~k~~r~~~~~l~~~N~~l~~e 88 (472)
T TIGR03752 67 EVKELRKRLAKLISENEALKAE 88 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555444
No 58
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=83.89 E-value=5.2 Score=28.28 Aligned_cols=41 Identities=20% Similarity=0.346 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024834 113 LEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 113 LE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrgri~ 156 (262)
||..-.-|++.-..|... +..|..|+..|++++..+.+++.
T Consensus 3 lE~Dy~~LK~~yd~Lk~~---~~~L~~E~~~L~aev~~L~~kl~ 43 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAE---YDSLKKENEKLRAEVQELKEKLQ 43 (45)
T ss_pred hHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhc
Confidence 344444444444444333 56677888888888888877764
No 59
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=83.55 E-value=15 Score=30.18 Aligned_cols=57 Identities=18% Similarity=0.176 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024834 97 EAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRG 153 (262)
Q Consensus 97 ESARRSR~RKQaHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrg 153 (262)
+.+..+..+-+...++|+.+....+.-.+...+.|..|+..-.++..||.++..++.
T Consensus 17 ~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~ 73 (132)
T PF07926_consen 17 EQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQ 73 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 445556666667777777777777777666666666555544445555544444433
No 60
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=83.32 E-value=5 Score=37.95 Aligned_cols=54 Identities=26% Similarity=0.257 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024834 97 EAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRG 153 (262)
Q Consensus 97 ESARRSR~RKQaHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrg 153 (262)
|+-+.-=.++++.++++.+.+++|+.+|.+|...+ ..|..|+..||..+.+|..
T Consensus 152 eeL~~eleele~e~ee~~erlk~le~E~s~LeE~~---~~l~~ev~~L~~r~~ELe~ 205 (290)
T COG4026 152 EELLKELEELEAEYEEVQERLKRLEVENSRLEEML---KKLPGEVYDLKKRWDELEP 205 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhchhHHHHHHHHHHHhcc
Confidence 33344444444444444444444444444444443 2344455555555554433
No 61
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=83.26 E-value=3.4 Score=40.02 Aligned_cols=42 Identities=19% Similarity=0.153 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 108 ARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLV 149 (262)
Q Consensus 108 aHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~ 149 (262)
.+.-.|.+|-++|++||.+|..+++.+..+++|+..||..+.
T Consensus 57 ~~y~~L~~EN~~Lk~Ena~L~~~l~~~e~l~~En~~Lr~ll~ 98 (337)
T PRK14872 57 SHALVLETENFLLKERIALLEERLKSYEEANQTPPLFSEILS 98 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 456789999999999999999999888888899998886654
No 62
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=82.97 E-value=3.8 Score=37.87 Aligned_cols=41 Identities=24% Similarity=0.417 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 101 KYREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARL 144 (262)
Q Consensus 101 RSR~RKQaHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rL 144 (262)
.-|-|=+++..|||+|+.+++.+.+.|..++ ..|.++|..|
T Consensus 86 sQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev---~~L~~DN~kL 126 (248)
T PF08172_consen 86 SQRDRFRQRNAELEEELRKQQQTISSLRREV---ESLRADNVKL 126 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 3456666788999999999988887775443 3344444444
No 63
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=82.84 E-value=7 Score=35.08 Aligned_cols=29 Identities=28% Similarity=0.349 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 104 EKKKARTASLEDEVVRLRAVNQQLLKRLQ 132 (262)
Q Consensus 104 ~RKQaHleeLE~QV~qLraeNqqLl~rLq 132 (262)
..-++.+..|+.|++.|+..|++|.+.+.
T Consensus 52 ~~L~~e~~~l~~e~e~L~~~~~~l~~~v~ 80 (251)
T PF11932_consen 52 QELLAEYRQLEREIENLEVYNEQLERQVA 80 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666667777777777777776664
No 64
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=82.50 E-value=8.1 Score=29.42 Aligned_cols=42 Identities=26% Similarity=0.254 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Q 024834 111 ASLEDEVVRLRAVNQQLLKRLQ----GQAALEAEVARLKCLLVDIR 152 (262)
Q Consensus 111 eeLE~QV~qLraeNqqLl~rLq----~~a~LEaEn~rLRaqL~elr 152 (262)
+..+...+.|+.|+...+.+|+ ....|.+||..|+.++...+
T Consensus 22 ~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 22 SVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334444555555555555554 24456666666666655443
No 65
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=82.32 E-value=6.7 Score=31.74 Aligned_cols=34 Identities=26% Similarity=0.334 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024834 110 TASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRG 153 (262)
Q Consensus 110 leeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrg 153 (262)
..+|+.|++.++++| ..++++|+.|+.++..++.
T Consensus 29 ~~~l~~q~~~~~~e~----------~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 29 YWRVNDQVAAQQQTN----------AKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHhhC
Confidence 445555555555555 4457788888888887754
No 66
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=82.02 E-value=9 Score=35.62 Aligned_cols=44 Identities=25% Similarity=0.309 Sum_probs=36.7
Q ss_pred hccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 89 KKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQ 132 (262)
Q Consensus 89 ~KRmlsNRESARRSR~RKQaHleeLE~QV~qLraeNqqLl~rLq 132 (262)
-+++..-.+++++.=.-++..+++|+.||.++..+.+.+..|+.
T Consensus 33 l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~ 76 (239)
T COG1579 33 LKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIK 76 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777888888888999999999999999998888888874
No 67
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=81.81 E-value=7.2 Score=39.05 Aligned_cols=46 Identities=22% Similarity=0.182 Sum_probs=36.9
Q ss_pred HhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 87 KTKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQ 132 (262)
Q Consensus 87 RK~KRmlsNRESARRSR~RKQaHleeLE~QV~qLraeNqqLl~rLq 132 (262)
++.+-..++=++..++....++..+.|+.+++.|+.++.+|...|.
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~ 83 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLI 83 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566677777888888888889999999999999888888874
No 68
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=81.68 E-value=2.3 Score=44.13 Aligned_cols=67 Identities=24% Similarity=0.236 Sum_probs=50.4
Q ss_pred CCCccccchHHHhhccCcccHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 76 STDDTAESTEKKTKKRPLGNREAVRKYR---EKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLK 145 (262)
Q Consensus 76 ~~~d~~e~~d~RK~KRmlsNRESARRSR---~RKQaHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLR 145 (262)
..|+..-...+|+.|-+.+--.|-+|-. .-=+++|.+|+.|-++||+||..|.++| +.|++|+.+||
T Consensus 274 ~~d~kv~krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL---~~l~~En~~~k 343 (655)
T KOG4343|consen 274 GSDIKVLKRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQL---DELVSENQRLK 343 (655)
T ss_pred ccCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH---HHHhhcCcccc
Confidence 3455566667777777777766655544 3456888899999999999999999997 67788887775
No 69
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=81.56 E-value=7 Score=33.20 Aligned_cols=32 Identities=34% Similarity=0.418 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 112 SLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKC 146 (262)
Q Consensus 112 eLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRa 146 (262)
-..+||+-||.+..+|..| +.+||+||..||.
T Consensus 64 AVREEVe~Lk~qI~eL~er---~~~Le~EN~lLk~ 95 (123)
T KOG4797|consen 64 AVREEVEVLKEQIRELEER---NSALERENSLLKT 95 (123)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHh
Confidence 3456777788887777777 3678888888875
No 70
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=81.53 E-value=7.9 Score=34.60 Aligned_cols=14 Identities=29% Similarity=0.226 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q 024834 111 ASLEDEVVRLRAVN 124 (262)
Q Consensus 111 eeLE~QV~qLraeN 124 (262)
+.|+..+..|+.+.
T Consensus 139 ~~Le~~~~~le~~l 152 (221)
T PF05700_consen 139 EQLEAMLKRLEKEL 152 (221)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 71
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=81.46 E-value=10 Score=32.96 Aligned_cols=25 Identities=32% Similarity=0.401 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 107 KARTASLEDEVVRLRAVNQQLLKRL 131 (262)
Q Consensus 107 QaHleeLE~QV~qLraeNqqLl~rL 131 (262)
...+.+|+.++..|+....+|...|
T Consensus 115 ~~~l~~l~~~~~~L~~~~~~l~~~l 139 (194)
T PF08614_consen 115 ERRLAELEAELAQLEEKIKDLEEEL 139 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444
No 72
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=81.43 E-value=15 Score=32.97 Aligned_cols=26 Identities=27% Similarity=0.321 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 106 KKARTASLEDEVVRLRAVNQQLLKRL 131 (262)
Q Consensus 106 KQaHleeLE~QV~qLraeNqqLl~rL 131 (262)
-|+.++++.+|...|..+-.+|.+++
T Consensus 40 sQ~~id~~~~e~~~L~~e~~~l~~e~ 65 (251)
T PF11932_consen 40 SQKRIDQWDDEKQELLAEYRQLEREI 65 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555544444444444
No 73
>PRK11637 AmiB activator; Provisional
Probab=80.92 E-value=11 Score=36.21 Aligned_cols=30 Identities=13% Similarity=0.088 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 102 YREKKKARTASLEDEVVRLRAVNQQLLKRL 131 (262)
Q Consensus 102 SR~RKQaHleeLE~QV~qLraeNqqLl~rL 131 (262)
....-++.++.|+.++..+..+...+..+|
T Consensus 69 ~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i 98 (428)
T PRK11637 69 QRASLLAQLKKQEEAISQASRKLRETQNTL 98 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344445555555555544444444444
No 74
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=80.85 E-value=9.9 Score=27.48 Aligned_cols=28 Identities=21% Similarity=0.347 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 104 EKKKARTASLEDEVVRLRAVNQQLLKRL 131 (262)
Q Consensus 104 ~RKQaHleeLE~QV~qLraeNqqLl~rL 131 (262)
.+.++.+++|+.++++|+++|.+|..++
T Consensus 20 ~~~~~ei~~l~~~i~~l~~e~~~L~~ei 47 (80)
T PF04977_consen 20 YQLNQEIAELQKEIEELKKENEELKEEI 47 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667788888888888877765554
No 75
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=80.83 E-value=12 Score=29.53 Aligned_cols=69 Identities=22% Similarity=0.308 Sum_probs=47.2
Q ss_pred HhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 024834 87 KTKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIEGE 158 (262)
Q Consensus 87 RK~KRmlsNRESARRSR~RKQaHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrgri~~~ 158 (262)
++-.+.+.+=|++=..|.-+....++|+.+|..|.++..+|..+|. ..++...+|..--.++..||..-
T Consensus 11 ~rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD---~~~ar~~~Le~~~~Evs~rL~~a 79 (89)
T PF13747_consen 11 TRLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELD---QAEARANRLEEANREVSRRLDSA 79 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666669999999999999999999984 33444555555555555555543
No 76
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=80.68 E-value=5.5 Score=39.37 Aligned_cols=48 Identities=29% Similarity=0.252 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Q 024834 104 EKKKARTASLEDEVVRLRAVNQQLLKRLQG----QAALEAEVARLKCLLVDI 151 (262)
Q Consensus 104 ~RKQaHleeLE~QV~qLraeNqqLl~rLq~----~a~LEaEn~rLRaqL~el 151 (262)
+|-+.+...||.-|.+++.+|++|.-.|+. ....|.|...|-.+|++.
T Consensus 123 ~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~ 174 (401)
T PF06785_consen 123 MKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEA 174 (401)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 344445555555566666666666666653 223344555554445543
No 77
>PRK09039 hypothetical protein; Validated
Probab=80.57 E-value=14 Score=35.37 Aligned_cols=16 Identities=25% Similarity=0.318 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 024834 112 SLEDEVVRLRAVNQQL 127 (262)
Q Consensus 112 eLE~QV~qLraeNqqL 127 (262)
.|..|++.||++...|
T Consensus 141 ~L~~qI~aLr~Qla~l 156 (343)
T PRK09039 141 LLNQQIAALRRQLAAL 156 (343)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 78
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=80.48 E-value=16 Score=30.26 Aligned_cols=46 Identities=20% Similarity=0.374 Sum_probs=36.8
Q ss_pred HhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 87 KTKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQ 132 (262)
Q Consensus 87 RK~KRmlsNRESARRSR~RKQaHleeLE~QV~qLraeNqqLl~rLq 132 (262)
..+.|=..-||..-....++...++.|+..+.+|+.++..+.+++.
T Consensus 45 ~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~ 90 (151)
T PF11559_consen 45 QQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELA 90 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667778888888888888888888888888888888888775
No 79
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=79.87 E-value=9.9 Score=31.81 Aligned_cols=18 Identities=28% Similarity=0.386 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 024834 139 AEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 139 aEn~rLRaqL~elrgri~ 156 (262)
.++..|+.++.++..|.+
T Consensus 68 ~~~~~L~~el~~l~~ry~ 85 (120)
T PF12325_consen 68 KEVEELEQELEELQQRYQ 85 (120)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 80
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=79.45 E-value=0.091 Score=50.68 Aligned_cols=48 Identities=31% Similarity=0.353 Sum_probs=41.8
Q ss_pred hHHHhhccCcccHHHHHH---HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 024834 84 TEKKTKKRPLGNREAVRK---YREKKKARTASLEDEVVRLR-AVNQQLLKRL 131 (262)
Q Consensus 84 ~d~RK~KRmlsNRESARR---SR~RKQaHleeLE~QV~qLr-aeNqqLl~rL 131 (262)
.+.|+..|+..|+-||-+ +|.||+..+..|..||+.|. .++..|...+
T Consensus 151 ~~~~~~~rr~rn~~aA~~~~~~r~~~~~~t~~l~~qv~~l~~~~~~~l~~~i 202 (395)
T KOG1414|consen 151 PEEKRLLRRERNPVAAAKPIPCRNRKKPSTSPLQRQVELLPPGINSPLSPQI 202 (395)
T ss_pred chHHHHhhccccccccCCCCCCccccccccccccchHhhcCCCCCcccCccc
Confidence 478899999999999999 99999999999999999999 6666644443
No 81
>PRK11637 AmiB activator; Provisional
Probab=79.35 E-value=14 Score=35.66 Aligned_cols=36 Identities=6% Similarity=0.125 Sum_probs=19.6
Q ss_pred cCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 91 RPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQ 126 (262)
Q Consensus 91 RmlsNRESARRSR~RKQaHleeLE~QV~qLraeNqq 126 (262)
.....++.....+..+++.+.+++.+...|..+..+
T Consensus 181 ~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e 216 (428)
T PRK11637 181 ELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNE 216 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555566666666665555554444
No 82
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=78.70 E-value=12 Score=34.78 Aligned_cols=47 Identities=26% Similarity=0.297 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024834 108 ARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGR 154 (262)
Q Consensus 108 aHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrgr 154 (262)
.+-+.|....+.+.+.|..+.........++.++.++...+.+++.|
T Consensus 28 ~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r 74 (239)
T COG1579 28 EIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRER 74 (239)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444333333444444444333333333
No 83
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=77.94 E-value=11 Score=33.10 Aligned_cols=33 Identities=27% Similarity=0.298 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 110 TASLEDEVVRLRAVNQQLLKRLQGQAALEAEVA 142 (262)
Q Consensus 110 leeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~ 142 (262)
++=.|.|+..||++|++|..+|+.....-.+|.
T Consensus 42 vSL~erQ~~~LR~~~~~L~~~l~~Li~~Ar~Ne 74 (225)
T PF04340_consen 42 VSLVERQLERLRERNRQLEEQLEELIENARENE 74 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666666666666666654333333333
No 84
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=77.78 E-value=8.9 Score=40.30 Aligned_cols=21 Identities=29% Similarity=0.352 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 024834 111 ASLEDEVVRLRAVNQQLLKRL 131 (262)
Q Consensus 111 eeLE~QV~qLraeNqqLl~rL 131 (262)
.+||.|+.+||.|-.+..+++
T Consensus 548 ~~lE~E~~~lr~elk~kee~~ 568 (697)
T PF09726_consen 548 RQLESELKKLRRELKQKEEQI 568 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 566677777766655554444
No 85
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=77.66 E-value=17 Score=32.02 Aligned_cols=9 Identities=33% Similarity=0.246 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 024834 139 AEVARLKCL 147 (262)
Q Consensus 139 aEn~rLRaq 147 (262)
.++..|+.+
T Consensus 117 ~~~~~l~~e 125 (188)
T PF03962_consen 117 KELKELKKE 125 (188)
T ss_pred HHHHHHHHH
Confidence 333333333
No 86
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=77.64 E-value=11 Score=35.09 Aligned_cols=49 Identities=22% Similarity=0.161 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhh
Q 024834 109 RTASLEDEVVRLRAVNQQLLKRLQGQ-AALEAEVARLKCLLVDIRGRIEG 157 (262)
Q Consensus 109 HleeLE~QV~qLraeNqqLl~rLq~~-a~LEaEn~rLRaqL~elrgri~~ 157 (262)
.+.+--..+.+|++||++|.+++... +.+......|+.+...|+.-|+-
T Consensus 60 ~~~~~~~~~~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL~~ 109 (283)
T TIGR00219 60 GISENLKDVNNLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELLNS 109 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34444456778999999999998654 56666666688888888887764
No 87
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=77.43 E-value=6.3 Score=40.61 Aligned_cols=53 Identities=34% Similarity=0.406 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHH
Q 024834 99 VRKYREKKKARTASLEDE-------VVRLRAVNQQLLKRLQG------------QAALEAEVARLKCLLVDI 151 (262)
Q Consensus 99 ARRSR~RKQaHleeLE~Q-------V~qLraeNqqLl~rLq~------------~a~LEaEn~rLRaqL~el 151 (262)
-|.+|.|-|++|.+|-+. |..|+++|..|...|+. ....|+|...+|..+.+.
T Consensus 33 ir~sR~rEK~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~ 104 (546)
T KOG0977|consen 33 IRDSREREKKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDET 104 (546)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHH
Confidence 477888888888877654 56677777777666641 345666666666666554
No 88
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=77.38 E-value=29 Score=30.15 Aligned_cols=54 Identities=20% Similarity=0.214 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhh
Q 024834 102 YREKKKARTASLEDEVVRLRAVNQQLLKRLQG----QAALEAEVARLKCLLVDIRGRI 155 (262)
Q Consensus 102 SR~RKQaHleeLE~QV~qLraeNqqLl~rLq~----~a~LEaEn~rLRaqL~elrgri 155 (262)
-+...+..+.+|+.++..+...++.|...+.. +..+|..+..|..+-.+|..|+
T Consensus 124 ~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rw 181 (194)
T PF08614_consen 124 ELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERW 181 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566777777777777777777777642 3344444444444444444443
No 89
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=77.38 E-value=4.1 Score=30.88 Aligned_cols=30 Identities=33% Similarity=0.298 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 115 DEVVRLRAVNQQLLKRLQGQAALEAEVARLKCL 147 (262)
Q Consensus 115 ~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaq 147 (262)
+||.-||.....|..+ +..||.||..||+.
T Consensus 14 EEVevLK~~I~eL~~~---n~~Le~EN~~Lk~~ 43 (59)
T PF01166_consen 14 EEVEVLKEQIAELEER---NSQLEEENNLLKQN 43 (59)
T ss_dssp TSHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHhc
Confidence 4555566665555555 35668888888875
No 90
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=77.11 E-value=15 Score=29.12 Aligned_cols=45 Identities=24% Similarity=0.354 Sum_probs=27.0
Q ss_pred hccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 89 KKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQG 133 (262)
Q Consensus 89 ~KRmlsNRESARRSR~RKQaHleeLE~QV~qLraeNqqLl~rLq~ 133 (262)
+.|-+..-+.+++-+..|.+.+..|..++..|+.+.+.+..+|+.
T Consensus 62 ~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~ 106 (126)
T PF13863_consen 62 RERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKLEE 106 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555666666666666666666666666666666554
No 91
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=76.99 E-value=7.1 Score=35.02 Aligned_cols=21 Identities=19% Similarity=0.400 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 024834 136 ALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 136 ~LEaEn~rLRaqL~elrgri~ 156 (262)
.++.|+..|+.++..|..+++
T Consensus 173 ~v~~eIe~~~~~~~~l~~~v~ 193 (262)
T PF14257_consen 173 RVRSEIEQLEGQLKYLDDRVD 193 (262)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 344445555555555555555
No 92
>PRK10963 hypothetical protein; Provisional
Probab=76.49 E-value=10 Score=33.91 Aligned_cols=20 Identities=20% Similarity=0.092 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 024834 114 EDEVVRLRAVNQQLLKRLQG 133 (262)
Q Consensus 114 E~QV~qLraeNqqLl~rLq~ 133 (262)
|-||.+||.+|++|..+|..
T Consensus 43 ErQ~~~LR~r~~~Le~~l~~ 62 (223)
T PRK10963 43 EWQMARQRNHIHVLEEEMTL 62 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443
No 93
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=76.49 E-value=24 Score=27.79 Aligned_cols=23 Identities=35% Similarity=0.387 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q 024834 134 QAALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 134 ~a~LEaEn~rLRaqL~elrgri~ 156 (262)
.+.||+||..|..++.+|..++.
T Consensus 63 IA~lE~eV~~LE~~v~~L~~~l~ 85 (88)
T PF14389_consen 63 IALLEAEVAKLEQKVLSLYRQLF 85 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888888888888877664
No 94
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=76.28 E-value=12 Score=38.57 Aligned_cols=25 Identities=32% Similarity=0.420 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhc
Q 024834 135 AALEAEVARLKCLLVDIRGRIEGEI 159 (262)
Q Consensus 135 a~LEaEn~rLRaqL~elrgri~~~i 159 (262)
..|.+||.+|+.+|..++..++.++
T Consensus 172 ~~Lk~en~rl~~~l~~~r~~ld~Et 196 (546)
T KOG0977|consen 172 KRLKAENSRLREELARARKQLDDET 196 (546)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 3455666666666666666555443
No 95
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=76.25 E-value=13 Score=32.06 Aligned_cols=20 Identities=20% Similarity=0.433 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHhhhhhhccc
Q 024834 142 ARLKCLLVDIRGRIEGEIGS 161 (262)
Q Consensus 142 ~rLRaqL~elrgri~~~iG~ 161 (262)
..+...+.++..+|+.+++.
T Consensus 123 ~~~~~ki~e~~~ki~~ei~~ 142 (177)
T PF07798_consen 123 AKQELKIQELNNKIDTEIAN 142 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444455555555554
No 96
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=76.15 E-value=29 Score=31.43 Aligned_cols=28 Identities=32% Similarity=0.440 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 105 KKKARTASLEDEVVRLRAVNQQLLKRLQ 132 (262)
Q Consensus 105 RKQaHleeLE~QV~qLraeNqqLl~rLq 132 (262)
+-+..+..|+.++..|+..|..|..+|.
T Consensus 220 ~~r~~~~~l~~el~~l~~~~~~Le~~l~ 247 (312)
T PF00038_consen 220 ELRRQIQSLQAELESLRAKNASLERQLR 247 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHhhhhhhccccchhhhhhhHH
Confidence 4456677788888888888888887775
No 97
>PF04350 PilO: Pilus assembly protein, PilO; PDB: 2RJZ_B.
Probab=75.97 E-value=2.7 Score=33.54 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 108 ARTASLEDEVVRLRAVNQQLLKRL 131 (262)
Q Consensus 108 aHleeLE~QV~qLraeNqqLl~rL 131 (262)
+.++.+..++.+++.+...+.++|
T Consensus 23 ~~l~~~~~~~~~~~~~l~~~~~~l 46 (144)
T PF04350_consen 23 ANLEELKKQLEQLEQQLEELLKKL 46 (144)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhC
Confidence 344444444444444444444443
No 98
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=75.84 E-value=22 Score=27.30 Aligned_cols=17 Identities=24% Similarity=0.137 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 024834 135 AALEAEVARLKCLLVDI 151 (262)
Q Consensus 135 a~LEaEn~rLRaqL~el 151 (262)
..|..++..|+.+...+
T Consensus 35 ~~L~~e~~~L~~en~~L 51 (72)
T PF06005_consen 35 NELKEENEELKEENEQL 51 (72)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHH
Confidence 33444444444444443
No 99
>PF14077 WD40_alt: Alternative WD40 repeat motif
Probab=75.66 E-value=2.5 Score=30.84 Aligned_cols=23 Identities=39% Similarity=0.696 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 024834 107 KARTASLEDEVVRLRAVNQQLLK 129 (262)
Q Consensus 107 QaHleeLE~QV~qLraeNqqLl~ 129 (262)
+.++.+||+||.-||.-|..|..
T Consensus 17 ~vrv~eLEeEV~~LrKINrdLfd 39 (48)
T PF14077_consen 17 RVRVSELEEEVRTLRKINRDLFD 39 (48)
T ss_pred eeeHHHHHHHHHHHHHHhHHHHh
Confidence 45789999999999999988753
No 100
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=75.50 E-value=27 Score=28.94 Aligned_cols=22 Identities=27% Similarity=0.323 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024834 107 KARTASLEDEVVRLRAVNQQLL 128 (262)
Q Consensus 107 QaHleeLE~QV~qLraeNqqLl 128 (262)
+..+++++.++..++..-.+|.
T Consensus 79 ~~~~~~~ere~~~~~~~~~~l~ 100 (151)
T PF11559_consen 79 KEQLEELERELASAEEKERQLQ 100 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444443333333333333
No 101
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=75.17 E-value=7.8 Score=30.32 Aligned_cols=34 Identities=24% Similarity=0.419 Sum_probs=19.9
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q 024834 98 AVRKYREKKKA----RTASLEDEVVRLRAVNQQLLKRL 131 (262)
Q Consensus 98 SARRSR~RKQa----HleeLE~QV~qLraeNqqLl~rL 131 (262)
|.++-|.||.+ +++.|..++..|..+|..|..++
T Consensus 61 aL~~VR~rK~~~l~~~i~~l~~ke~~l~~en~~L~~~~ 98 (100)
T PF01486_consen 61 ALKRVRSRKDQLLMEQIEELKKKERELEEENNQLRQKI 98 (100)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55666666644 45556666666666666665554
No 102
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=75.01 E-value=20 Score=32.52 Aligned_cols=41 Identities=32% Similarity=0.332 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH
Q 024834 108 ARTASLEDEVVRLRAVNQQLLKRLQG--------QAALEAEVARLKCLL 148 (262)
Q Consensus 108 aHleeLE~QV~qLraeNqqLl~rLq~--------~a~LEaEn~rLRaqL 148 (262)
..++.|..+...|......|..++.. ...+|+|+..||.++
T Consensus 230 ~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~ 278 (312)
T PF00038_consen 230 AELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEM 278 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHH
Confidence 33444444444444444444333321 234555555555444
No 103
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=74.77 E-value=19 Score=37.26 Aligned_cols=65 Identities=25% Similarity=0.269 Sum_probs=35.5
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhhh
Q 024834 92 PLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQG----QAALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 92 mlsNRESARRSR~RKQaHleeLE~QV~qLraeNqqLl~rLq~----~a~LEaEn~rLRaqL~elrgri~ 156 (262)
.+.-.+........-+.++++|+.++.+.+.++.+|..+.+. ...+..|+..|..+..+++.||.
T Consensus 155 L~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~ 223 (546)
T PF07888_consen 155 LLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIR 223 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444445555555555555555555555544432 34566667777776666666554
No 104
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=74.75 E-value=34 Score=28.70 Aligned_cols=57 Identities=16% Similarity=0.155 Sum_probs=39.2
Q ss_pred ccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 90 KRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLV 149 (262)
Q Consensus 90 KRmlsNRESARRSR~RKQaHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~ 149 (262)
.-+..-.|...-||..=.+.-++|+..+..|++++..+.+|+. .|+++++.++..+.
T Consensus 19 a~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~---eLqaki~ea~~~le 75 (107)
T PF09304_consen 19 ASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIA---ELQAKIDEARRNLE 75 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 4445556777777777777778888888888888888877764 45555555554443
No 105
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=74.11 E-value=11 Score=37.79 Aligned_cols=70 Identities=19% Similarity=0.163 Sum_probs=54.2
Q ss_pred hhccCcccHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Q 024834 88 TKKRPLGNREAVRKYREKKK------------ARTASLEDEVVRLRAVNQQLLKRLQ----GQAALEAEVARLKCLLVDI 151 (262)
Q Consensus 88 K~KRmlsNRESARRSR~RKQ------------aHleeLE~QV~qLraeNqqLl~rLq----~~a~LEaEn~rLRaqL~el 151 (262)
-+.|...-|++-..+|.|.+ .-+..||.|+..++++-.+|..-+. ....|+++++.|+.|+...
T Consensus 254 Ae~rl~~Ar~aL~~fRn~~gvlDP~~~a~~~~~lI~~Le~qLa~~~aeL~~L~~~~~p~sPqV~~l~~rI~aLe~QIa~e 333 (434)
T PRK15178 254 AQENLGAARLELLKIQHIQKDIDPKETITAIYQLIAGFETQLAEAKAEYAQLMVNGLDQNPLIPRLSAKIKVLEKQIGEQ 333 (434)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHH
Confidence 45677777888888887763 5677888888888888888866554 2568889999999999998
Q ss_pred Hhhhhh
Q 024834 152 RGRIEG 157 (262)
Q Consensus 152 rgri~~ 157 (262)
++++.+
T Consensus 334 r~kl~~ 339 (434)
T PRK15178 334 RNRLSN 339 (434)
T ss_pred HHHhhc
Confidence 888864
No 106
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=74.09 E-value=15 Score=36.31 Aligned_cols=49 Identities=18% Similarity=0.232 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024834 102 YREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRG 153 (262)
Q Consensus 102 SR~RKQaHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrg 153 (262)
-|+|.++.++.|..+.+.|+..-+.|..- ...|+++..+|..++..|..
T Consensus 219 lR~r~eeeme~~~aeq~slkRt~EeL~~G---~~kL~~~~etLEqq~~~L~~ 267 (365)
T KOG2391|consen 219 LRRRREEEMERLQAEQESLKRTEEELNIG---KQKLVAMKETLEQQLQSLQK 267 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHhh---HHHHHHHHHHHHHHHHHHHh
Confidence 35566667777777777666666555444 34556666666666655443
No 107
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=73.94 E-value=30 Score=30.74 Aligned_cols=42 Identities=24% Similarity=0.335 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 104 EKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLL 148 (262)
Q Consensus 104 ~RKQaHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL 148 (262)
.+.+..+++|..++..|+++|..|.+++ ..++.+...|-..+
T Consensus 107 ~~l~~e~~~l~~~~e~Le~e~~~L~~~~---~~~~eDY~~L~~Im 148 (161)
T TIGR02894 107 ERLKNQNESLQKRNEELEKELEKLRQRL---STIEEDYQTLIDIM 148 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 3344445555555555555555555553 33444444444433
No 108
>PRK11546 zraP zinc resistance protein; Provisional
Probab=73.88 E-value=23 Score=30.70 Aligned_cols=61 Identities=23% Similarity=0.207 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhhhh
Q 024834 97 EAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQ----GQAALEAEVARLKCLLVDIRGRIEG 157 (262)
Q Consensus 97 ESARRSR~RKQaHleeLE~QV~qLraeNqqLl~rLq----~~a~LEaEn~rLRaqL~elrgri~~ 157 (262)
+.+...+.+=+..+++|..++..-+.|-+.|+..=. ...+|..|+..||.+|.+.|-..+-
T Consensus 50 a~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~~~~~ 114 (143)
T PRK11546 50 AAWQKIHNDFYAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELRVKRDI 114 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777788888888888777777766654432 2457889999999999988765553
No 109
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=73.72 E-value=19 Score=34.34 Aligned_cols=14 Identities=21% Similarity=0.387 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHH
Q 024834 134 QAALEAEVARLKCL 147 (262)
Q Consensus 134 ~a~LEaEn~rLRaq 147 (262)
+..|..|+..||++
T Consensus 106 n~~L~~en~~Lr~~ 119 (292)
T KOG4005|consen 106 NEILQNENDSLRAI 119 (292)
T ss_pred HHHHHHHHHHHHHH
Confidence 44555666666544
No 110
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=73.68 E-value=30 Score=30.88 Aligned_cols=47 Identities=15% Similarity=0.282 Sum_probs=38.6
Q ss_pred HHhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 86 KKTKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQ 132 (262)
Q Consensus 86 ~RK~KRmlsNRESARRSR~RKQaHleeLE~QV~qLraeNqqLl~rLq 132 (262)
++|+.+..++-+.|.+.|..=++-+++.+.++.+-|.+-++++....
T Consensus 83 e~R~~~I~~~L~~Ae~~k~eAe~~~~~ye~~L~~Ar~eA~~Ii~~Ar 129 (204)
T PRK09174 83 ETRRDRIAQDLDQAARLKQEADAAVAAYEQELAQARAKAHSIAQAAR 129 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777888889999999999999999999988888888877654
No 111
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=73.31 E-value=34 Score=30.85 Aligned_cols=43 Identities=21% Similarity=0.226 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024834 114 EDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 114 E~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrgri~ 156 (262)
-....+|++||++|.+++.......++...|+.+...|+..++
T Consensus 68 ~~~~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~ 110 (276)
T PRK13922 68 LASLFDLREENEELKKELLELESRLQELEQLEAENARLRELLN 110 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456788999999988876555555555577777777777665
No 112
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=73.17 E-value=16 Score=29.30 Aligned_cols=44 Identities=23% Similarity=0.195 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhh
Q 024834 112 SLEDEVVRLRAVNQQLLKRLQG---QAALEAEVARLKCLLVDIRGRI 155 (262)
Q Consensus 112 eLE~QV~qLraeNqqLl~rLq~---~a~LEaEn~rLRaqL~elrgri 155 (262)
.|+++.+.|+.|.+.|..++.. ......||.+||.++..++...
T Consensus 21 ~~~~e~~~L~eEI~~Lr~qve~nPevtr~A~EN~rL~ee~rrl~~f~ 67 (86)
T PF12711_consen 21 YLEEENEALKEEIQLLREQVEHNPEVTRFAMENIRLREELRRLQSFY 67 (86)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456668888888888877764 3455567777777777665543
No 113
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=73.16 E-value=6.3 Score=29.92 Aligned_cols=25 Identities=28% Similarity=0.316 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 107 KARTASLEDEVVRLRAVNQQLLKRL 131 (262)
Q Consensus 107 QaHleeLE~QV~qLraeNqqLl~rL 131 (262)
+.++.+|++++.+|+.||.-|....
T Consensus 20 K~~I~eL~~~n~~Le~EN~~Lk~~~ 44 (59)
T PF01166_consen 20 KEQIAELEERNSQLEEENNLLKQNA 44 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4678888888888888888776553
No 114
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=73.14 E-value=28 Score=28.08 Aligned_cols=46 Identities=26% Similarity=0.325 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024834 105 KKKARTASLEDEVVRL--RAVNQQLLKRLQGQAALEAEVARLKCLLVDIRG 153 (262)
Q Consensus 105 RKQaHleeLE~QV~qL--raeNqqLl~rLq~~a~LEaEn~rLRaqL~elrg 153 (262)
+...++..||.+|+.| +.+-.+|.-+| ..++.++..|++++.-+..
T Consensus 46 ~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l---~el~G~~~~l~~~l~~v~~ 93 (106)
T PF10805_consen 46 EHDRRLQALETKLEHLPTRDDVHDLQLEL---AELRGELKELSARLQGVSH 93 (106)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHH---HHHHhHHHHHHHHHHHHHH
Confidence 3467888899999888 88888888776 4456666666666555443
No 115
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=72.32 E-value=11 Score=34.49 Aligned_cols=26 Identities=42% Similarity=0.477 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcccc
Q 024834 137 LEAEVARLKCLLVDIRGRIEGEIGSF 162 (262)
Q Consensus 137 LEaEn~rLRaqL~elrgri~~~iG~f 162 (262)
|..++.+||++|...+.+.+.....|
T Consensus 136 l~~e~erL~aeL~~er~~~e~q~~~F 161 (202)
T PF06818_consen 136 LRREVERLRAELQRERQRREEQRSSF 161 (202)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 55567777777776666655444343
No 116
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=71.51 E-value=39 Score=26.73 Aligned_cols=42 Identities=21% Similarity=0.320 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Q 024834 110 TASLEDEVVRLRAVNQQLLKRLQ----GQAALEAEVARLKCLLVDI 151 (262)
Q Consensus 110 leeLE~QV~qLraeNqqLl~rLq----~~a~LEaEn~rLRaqL~el 151 (262)
-++|..++..|+..-..|..|+. ++..|+.||..|..-+..|
T Consensus 18 k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nL 63 (80)
T PF10224_consen 18 KEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNL 63 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677788888888888888874 2455555555555544333
No 117
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=71.39 E-value=7.8 Score=39.36 Aligned_cols=60 Identities=23% Similarity=0.286 Sum_probs=48.6
Q ss_pred chHHHhhccCcccHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 83 STEKKTKKRPLGNREAVRKYREKKKAR----------TASLEDEVVRLRAVNQQLLKRLQGQAALEAEVA 142 (262)
Q Consensus 83 ~~d~RK~KRmlsNRESARRSR~RKQaH----------leeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~ 142 (262)
....||.|.|++--||-||..+==..+ =.+|..+|.+|..+|+.|+..|+.+..+..+++
T Consensus 251 KrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~klQt~v~q~a 320 (472)
T KOG0709|consen 251 KRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELELSNRSLLAQLKKLQTLVIQVA 320 (472)
T ss_pred HHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHHHHHHHhhcc
Confidence 345678899999999999987654433 358999999999999999999988777776653
No 118
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=71.34 E-value=30 Score=33.44 Aligned_cols=21 Identities=33% Similarity=0.550 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 024834 111 ASLEDEVVRLRAVNQQLLKRL 131 (262)
Q Consensus 111 eeLE~QV~qLraeNqqLl~rL 131 (262)
+.||+.+.++++.-.||.+.|
T Consensus 94 s~Leddlsqt~aikeql~kyi 114 (333)
T KOG1853|consen 94 SQLEDDLSQTHAIKEQLRKYI 114 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444443
No 119
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=71.32 E-value=23 Score=27.32 Aligned_cols=22 Identities=23% Similarity=0.323 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024834 110 TASLEDEVVRLRAVNQQLLKRL 131 (262)
Q Consensus 110 leeLE~QV~qLraeNqqLl~rL 131 (262)
+.+.|.++.+|+.+|=.|.=||
T Consensus 2 lrEqe~~i~~L~KENF~LKLrI 23 (75)
T PF07989_consen 2 LREQEEQIDKLKKENFNLKLRI 23 (75)
T ss_pred HHHHHHHHHHHHHhhhhHHHHH
Confidence 3467777778887776666555
No 120
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=71.27 E-value=15 Score=33.71 Aligned_cols=28 Identities=14% Similarity=0.159 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 105 KKKARTASLEDEVVRLRAVNQQLLKRLQ 132 (262)
Q Consensus 105 RKQaHleeLE~QV~qLraeNqqLl~rLq 132 (262)
-=+.+|++|..+|.+||.+++++..+|+
T Consensus 58 ~l~~ql~~lq~ev~~LrG~~E~~~~~l~ 85 (263)
T PRK10803 58 QLQQQLSDNQSDIDSLRGQIQENQYQLN 85 (263)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4477888888889888888888877764
No 121
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=70.78 E-value=8.8 Score=30.33 Aligned_cols=28 Identities=25% Similarity=0.331 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 105 KKKARTASLEDEVVRLRAVNQQLLKRLQ 132 (262)
Q Consensus 105 RKQaHleeLE~QV~qLraeNqqLl~rLq 132 (262)
-|+++++.|...+..|+++|.+|..+|+
T Consensus 77 ~~~~~~~~L~~~l~~l~~eN~~L~~~i~ 104 (109)
T PF03980_consen 77 YKKKEREQLNARLQELEEENEALAEEIQ 104 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578899999999999999988887764
No 122
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=70.63 E-value=34 Score=30.12 Aligned_cols=18 Identities=17% Similarity=0.276 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 024834 139 AEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 139 aEn~rLRaqL~elrgri~ 156 (262)
.+...++.++..+...+.
T Consensus 126 ~~~~~~~~~l~~l~~~l~ 143 (302)
T PF10186_consen 126 NELEERKQRLSQLQSQLA 143 (302)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444555555544444
No 123
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=69.79 E-value=24 Score=35.10 Aligned_cols=66 Identities=24% Similarity=0.260 Sum_probs=45.1
Q ss_pred hHHHhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHH
Q 024834 84 TEKKTKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQG------------------QAALEAEVARLK 145 (262)
Q Consensus 84 ~d~RK~KRmlsNRESARRSR~RKQaHleeLE~QV~qLraeNqqLl~rLq~------------------~a~LEaEn~rLR 145 (262)
.=+-|.|+...|-|--|..|+--++| ..+.++|+..|++|+..|-+ .+.++.||.+|.
T Consensus 72 llq~kirk~~e~~eglr~i~es~~e~----q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lq 147 (401)
T PF06785_consen 72 LLQTKIRKITEKDEGLRKIRESVEER----QQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQ 147 (401)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHH----HHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 34567888899999999888654333 34456677777777766631 335667888888
Q ss_pred HHHHHHHh
Q 024834 146 CLLVDIRG 153 (262)
Q Consensus 146 aqL~elrg 153 (262)
.+|.++..
T Consensus 148 lqL~~l~~ 155 (401)
T PF06785_consen 148 LQLDALQQ 155 (401)
T ss_pred HhHHHHHH
Confidence 88877644
No 124
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=68.75 E-value=17 Score=31.56 Aligned_cols=27 Identities=19% Similarity=0.299 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhcccc
Q 024834 136 ALEAEVARLKCLLVDIRGRIEGEIGSF 162 (262)
Q Consensus 136 ~LEaEn~rLRaqL~elrgri~~~iG~f 162 (262)
.|..|+..|+.++..++-.++.....|
T Consensus 85 ~L~qqv~~L~~e~s~~~~E~da~k~k~ 111 (135)
T KOG4196|consen 85 ELQQQVEKLKEENSRLRRELDAYKSKY 111 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666655433
No 125
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=68.19 E-value=32 Score=29.06 Aligned_cols=19 Identities=32% Similarity=0.445 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 024834 135 AALEAEVARLKCLLVDIRG 153 (262)
Q Consensus 135 a~LEaEn~rLRaqL~elrg 153 (262)
..|+.|+..|...|..|++
T Consensus 119 ~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 119 EELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3445555555555555444
No 126
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.13 E-value=38 Score=26.62 Aligned_cols=48 Identities=19% Similarity=0.210 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 024834 107 KARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIEG 157 (262)
Q Consensus 107 QaHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrgri~~ 157 (262)
.++|.+||.+++--......|-..| +.....+++++.+|.-|.+|+..
T Consensus 7 E~Ri~eLE~r~AfQE~tieeLn~~l---aEq~~~i~k~q~qlr~L~~kl~~ 54 (72)
T COG2900 7 EARIIELEIRLAFQEQTIEELNDAL---AEQQLVIDKLQAQLRLLTEKLKD 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHh
Confidence 4688999998876665555554444 33345677888888888887764
No 127
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=68.11 E-value=26 Score=36.74 Aligned_cols=22 Identities=50% Similarity=0.552 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024834 111 ASLEDEVVRLRAVNQQLLKRLQ 132 (262)
Q Consensus 111 eeLE~QV~qLraeNqqLl~rLq 132 (262)
.+|+.+|++||+++++|.+.|.
T Consensus 82 ~~L~~everLraei~~l~~~I~ 103 (632)
T PF14817_consen 82 RELEKEVERLRAEIQELDKEIE 103 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555553
No 128
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=68.02 E-value=56 Score=28.34 Aligned_cols=46 Identities=11% Similarity=0.169 Sum_probs=36.7
Q ss_pred HhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 87 KTKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQ 132 (262)
Q Consensus 87 RK~KRmlsNRESARRSR~RKQaHleeLE~QV~qLraeNqqLl~rLq 132 (262)
+|+.+..+.-+.|.+.+..=++-+++.+.++...|.+-++++....
T Consensus 62 ~R~~~I~~~l~~Ae~~~~eA~~~~~eye~~L~~Ar~EA~~ii~~A~ 107 (181)
T PRK13454 62 ERQGTITNDLAAAEELKQKAVEAEKAYNKALADARAEAQRIVAETR 107 (181)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777888888888888888888888888888888877764
No 129
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=67.89 E-value=32 Score=34.99 Aligned_cols=43 Identities=26% Similarity=0.174 Sum_probs=29.2
Q ss_pred hccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 89 KKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRL 131 (262)
Q Consensus 89 ~KRmlsNRESARRSR~RKQaHleeLE~QV~qLraeNqqLl~rL 131 (262)
.-|...-+...|.-=+-=++++.++|.++.+|+.||.||.++.
T Consensus 29 ~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~ 71 (459)
T KOG0288|consen 29 QSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEER 71 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333346789999999999999999998775
No 130
>PF07820 TraC: TraC-like protein; InterPro: IPR012930 The members of this family are sequences that are similar to TraC (Q84HT8 from SWISSPROT) from Rhizobium etli. The gene encoding this protein is one of a group of genes found on plasmid p42a of Rhizobium etli (strain CFN 42/ATCC 51251) that are thought to be involved in the process of plasmid self-transmission. Mobilisation of plasmid p42a is of importance as it is required for transfer of plasmid p42d, the symbiotic plasmid which carries most of the genes required for nodulation and nitrogen fixation by this symbiotic bacterium. The predicted protein products of p42a are similar to known transfer proteins of Agrobacterium tumefaciens plasmid pTiC58 []. ; GO: 0000746 conjugation
Probab=67.57 E-value=9.1 Score=31.24 Aligned_cols=52 Identities=15% Similarity=0.219 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHhhhhhhc
Q 024834 108 ARTASLEDEVVRLRAVNQQLLKRLQG----------QAALEAEVARLKCLLVDIRGRIEGEI 159 (262)
Q Consensus 108 aHleeLE~QV~qLraeNqqLl~rLq~----------~a~LEaEn~rLRaqL~elrgri~~~i 159 (262)
+-+.+|++|+++|+.+..++..+..+ ...|+-....|+..+.+|..|.....
T Consensus 2 k~~s~I~~eIekLqe~lk~~e~keaERigr~AlKaGL~eieI~d~eL~~~FeeIa~RFrk~~ 63 (92)
T PF07820_consen 2 KSSSKIREEIEKLQEQLKQAETKEAERIGRIALKAGLGEIEISDAELQAAFEEIAARFRKGK 63 (92)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccCCHHHHHHHHHHHHHHHhccc
Confidence 34678899999999998888887653 23455567889999999999888544
No 131
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=67.53 E-value=23 Score=25.57 Aligned_cols=33 Identities=30% Similarity=0.450 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 109 RTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARL 144 (262)
Q Consensus 109 HleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rL 144 (262)
.+..+..|+.+|+.++++|..+ ...|+.++..|
T Consensus 18 ~~~~~~~ei~~l~~~i~~l~~e---~~~L~~ei~~l 50 (80)
T PF04977_consen 18 RYYQLNQEIAELQKEIEELKKE---NEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHh
Confidence 4556666666666666666555 34555555555
No 132
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=67.50 E-value=26 Score=28.13 Aligned_cols=50 Identities=22% Similarity=0.291 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhhh
Q 024834 107 KARTASLEDEVVRLRAVNQQLLKRLQG-------QAALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 107 QaHleeLE~QV~qLraeNqqLl~rLq~-------~a~LEaEn~rLRaqL~elrgri~ 156 (262)
+..++.||+.+++.+..-+.+..||.. ...+|.|...|+.++.....++.
T Consensus 4 ~~eId~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~ 60 (85)
T PF15188_consen 4 AKEIDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLENNEKELK 60 (85)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHH
Confidence 457899999999999999999999862 56788888888888776655544
No 133
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=67.32 E-value=25 Score=36.97 Aligned_cols=52 Identities=25% Similarity=0.312 Sum_probs=42.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q 024834 95 NREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQG---QAALEAEVARLKC 146 (262)
Q Consensus 95 NRESARRSR~RKQaHleeLE~QV~qLraeNqqLl~rLq~---~a~LEaEn~rLRa 146 (262)
=++|-+.-|+.-++.+..||.|++.+..+..+|.++|+. |..+..|+.+||+
T Consensus 304 ~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~sDYeeIK~ELsiLk~ 358 (629)
T KOG0963|consen 304 LEASLVEEREKHKAQISALEKELKAKISELEELKEKLNSRSDYEEIKKELSILKA 358 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHH
Confidence 467788889999999999999999999999999999973 5555566655553
No 134
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=67.28 E-value=7.8 Score=36.05 Aligned_cols=33 Identities=30% Similarity=0.497 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 024834 122 AVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIEG 157 (262)
Q Consensus 122 aeNqqLl~rLq~~a~LEaEn~rLRaqL~elrgri~~ 157 (262)
..|..-++|| .+||.|+++||+|++.|...=++
T Consensus 115 ~~~~~AlqKI---sALEdELs~LRaQIA~IV~~qe~ 147 (253)
T PF05308_consen 115 PANEAALQKI---SALEDELSRLRAQIAKIVAAQEQ 147 (253)
T ss_pred CCCHHHHHHH---HHHHHHHHHHHHHHHHHHhcccc
Confidence 3344445554 78999999999999998765443
No 135
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=67.19 E-value=23 Score=33.49 Aligned_cols=27 Identities=22% Similarity=0.164 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 105 KKKARTASLEDEVVRLRAVNQQLLKRL 131 (262)
Q Consensus 105 RKQaHleeLE~QV~qLraeNqqLl~rL 131 (262)
+..+++.+||.+..+|.++...|..++
T Consensus 61 ~l~~eL~~LE~e~~~l~~el~~le~e~ 87 (314)
T PF04111_consen 61 ELLQELEELEKEREELDQELEELEEEL 87 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555444444443
No 136
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=67.18 E-value=30 Score=38.32 Aligned_cols=64 Identities=17% Similarity=0.245 Sum_probs=49.2
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024834 93 LGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 93 lsNRESARRSR~RKQaHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrgri~ 156 (262)
.+..+..+.-+.+++..+.+|+.++..++.+..+|..+++....++.++..|..++.+++..|.
T Consensus 842 ~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~~r~~le~~L~el~~el~~l~~~~~ 905 (1311)
T TIGR00606 842 VSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIK 905 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667888888889999998888888888888888887777777777777777766655544
No 137
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=67.06 E-value=21 Score=31.20 Aligned_cols=26 Identities=19% Similarity=0.119 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 98 AVRKYREKKKARTASLEDEVVRLRAV 123 (262)
Q Consensus 98 SARRSR~RKQaHleeLE~QV~qLrae 123 (262)
++-+.|..||.+.+.+.+.+..-+.+
T Consensus 113 ~~l~~R~~~q~~~e~~~e~L~~k~~~ 138 (200)
T cd07624 113 DVLKRRDQFQIEYELSVEELNKKRLE 138 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888998888888887776665
No 138
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=67.00 E-value=47 Score=29.57 Aligned_cols=44 Identities=27% Similarity=0.312 Sum_probs=35.7
Q ss_pred hhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 88 TKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRL 131 (262)
Q Consensus 88 K~KRmlsNRESARRSR~RKQaHleeLE~QV~qLraeNqqLl~rL 131 (262)
.-++.+.+-+.-..+=..-++++..++.++..|+-+++.|..++
T Consensus 73 eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~ 116 (201)
T PF13851_consen 73 ELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRF 116 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777887777777888888888888888888888888886
No 139
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=66.40 E-value=23 Score=28.52 Aligned_cols=14 Identities=21% Similarity=0.031 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHH
Q 024834 135 AALEAEVARLKCLL 148 (262)
Q Consensus 135 a~LEaEn~rLRaqL 148 (262)
..|+.|++.||..+
T Consensus 88 ~~L~~E~diLKKa~ 101 (121)
T PRK09413 88 GKKTMENELLKEAV 101 (121)
T ss_pred HHHHHHHHHHHHHH
Confidence 33456666666543
No 140
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=66.26 E-value=22 Score=38.87 Aligned_cols=21 Identities=24% Similarity=0.512 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 024834 136 ALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 136 ~LEaEn~rLRaqL~elrgri~ 156 (262)
.|.-|...|.-++..|.+||.
T Consensus 441 ql~~eletLn~k~qqls~kl~ 461 (1118)
T KOG1029|consen 441 QLQQELETLNFKLQQLSGKLQ 461 (1118)
T ss_pred HHHHHHHHHHHHHHHHhhhhh
Confidence 344444444444444444443
No 141
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=66.16 E-value=36 Score=25.03 Aligned_cols=26 Identities=31% Similarity=0.402 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 107 KARTASLEDEVVRLRAVNQQLLKRLQ 132 (262)
Q Consensus 107 QaHleeLE~QV~qLraeNqqLl~rLq 132 (262)
.+.++.|+.++..|+.+...+..+|+
T Consensus 3 ~~E~~rL~Kel~kl~~~i~~~~~kL~ 28 (66)
T PF10458_consen 3 EAEIERLEKELEKLEKEIERLEKKLS 28 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45677888888888888888888886
No 142
>PRK09039 hypothetical protein; Validated
Probab=66.06 E-value=26 Score=33.50 Aligned_cols=9 Identities=22% Similarity=0.394 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 024834 110 TASLEDEVV 118 (262)
Q Consensus 110 leeLE~QV~ 118 (262)
++.|+.|+.
T Consensus 146 I~aLr~Qla 154 (343)
T PRK09039 146 IAALRRQLA 154 (343)
T ss_pred HHHHHHHHH
Confidence 333333333
No 143
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=65.68 E-value=70 Score=28.23 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 024834 110 TASLEDEVVRLRAVNQQLLKRLQ 132 (262)
Q Consensus 110 leeLE~QV~qLraeNqqLl~rLq 132 (262)
..+|+.++..|+.++.+|..+++
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~ 144 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQ 144 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666654
No 144
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=65.55 E-value=51 Score=31.42 Aligned_cols=25 Identities=20% Similarity=0.327 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 107 KARTASLEDEVVRLRAVNQQLLKRL 131 (262)
Q Consensus 107 QaHleeLE~QV~qLraeNqqLl~rL 131 (262)
++.++.+++++++.+++-+.+..++
T Consensus 206 ~~ELe~~~EeL~~~Eke~~e~~~~i 230 (269)
T PF05278_consen 206 KEELEELEEELKQKEKEVKEIKERI 230 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444
No 145
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=65.50 E-value=64 Score=27.02 Aligned_cols=17 Identities=24% Similarity=0.352 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHhhh
Q 024834 139 AEVARLKCLLVDIRGRI 155 (262)
Q Consensus 139 aEn~rLRaqL~elrgri 155 (262)
.+|..||..+.++..-.
T Consensus 96 E~veEL~~Dv~DlK~my 112 (120)
T PF12325_consen 96 EEVEELRADVQDLKEMY 112 (120)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45666666666655443
No 146
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=65.50 E-value=21 Score=38.04 Aligned_cols=40 Identities=30% Similarity=0.202 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Q 024834 110 TASLEDEVVRLRAVNQQLLKRL----QGQAALEAEVARLKCLLV 149 (262)
Q Consensus 110 leeLE~QV~qLraeNqqLl~rL----q~~a~LEaEn~rLRaqL~ 149 (262)
.+.||.|..+||.+..++..|- ++|..||.||.-|.-++.
T Consensus 71 ~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs 114 (717)
T PF09730_consen 71 CEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVS 114 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 4556666666666666665552 345555555544444333
No 147
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=65.45 E-value=39 Score=25.87 Aligned_cols=36 Identities=28% Similarity=0.340 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 024834 111 ASLEDEVVRLRAVNQQLLKRLQG-QAALEAEVARLKC 146 (262)
Q Consensus 111 eeLE~QV~qLraeNqqLl~rLq~-~a~LEaEn~rLRa 146 (262)
..|..++..++.++.+|+.+... -..+|+-+.+|++
T Consensus 24 ~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~ 60 (65)
T TIGR02449 24 RLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKA 60 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 34555555555555555555432 3345555555554
No 148
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=65.41 E-value=31 Score=37.76 Aligned_cols=63 Identities=29% Similarity=0.376 Sum_probs=30.9
Q ss_pred hhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024834 88 TKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGR 154 (262)
Q Consensus 88 K~KRmlsNRESARRSR~RKQaHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrgr 154 (262)
..+|.+.....+.+++..+. .++.++.++..++++...+..+++ ..+.++..|+.++.+++..
T Consensus 220 ~e~~~~~~~~~~~~~~~~~~-~l~~~~~~l~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~e~~~~ 282 (1163)
T COG1196 220 AELRELELALLLAKLKELRK-ELEELEEELSRLEEELEELQEELE---EAEKEIEELKSELEELREE 282 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444333 455666666666666655555553 3344444444444444433
No 149
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=65.20 E-value=24 Score=28.87 Aligned_cols=39 Identities=31% Similarity=0.266 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 110 TASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDI 151 (262)
Q Consensus 110 leeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~el 151 (262)
...|..+++.++++|+.|..+ ...|++|+..|+.....|
T Consensus 52 ~~~l~~qi~~~~~e~~~L~~~---~~~l~~ei~~L~dg~~~i 90 (117)
T COG2919 52 VLQLQRQIAAQQAELEKLSAR---NTALEAEIKDLKDGRDYI 90 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhcccHHHH
Confidence 445566666667777666665 467788888887763333
No 150
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=65.01 E-value=46 Score=27.92 Aligned_cols=61 Identities=26% Similarity=0.360 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HH----HHHHHHHHHHHHHHHHHHHHhhhh
Q 024834 96 REAVRKYREKKKARTASLEDEVVRLRAVNQQLLKR-------LQ----GQAALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 96 RESARRSR~RKQaHleeLE~QV~qLraeNqqLl~r-------Lq----~~a~LEaEn~rLRaqL~elrgri~ 156 (262)
|++.-.||+-.+..+..|+..+..++..+.+|.+. ++ ....+...+.-|++++.+++.-|+
T Consensus 4 ~~~l~as~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le 75 (107)
T PF09304_consen 4 KEALEASQNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLE 75 (107)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666666665555555444322 11 123344444555555555554443
No 151
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=64.89 E-value=25 Score=26.09 Aligned_cols=27 Identities=15% Similarity=0.145 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 105 KKKARTASLEDEVVRLRAVNQQLLKRL 131 (262)
Q Consensus 105 RKQaHleeLE~QV~qLraeNqqLl~rL 131 (262)
.....++.++.|+++|+.+|.+|..++
T Consensus 28 ~~~~~~~~~~~~~~~l~~en~~L~~ei 54 (85)
T TIGR02209 28 QLNNELQKLQLEIDKLQKEWRDLQLEV 54 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666677777777777776665544
No 152
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=64.73 E-value=64 Score=25.13 Aligned_cols=45 Identities=24% Similarity=0.209 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 107 KARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDI 151 (262)
Q Consensus 107 QaHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~el 151 (262)
+..+++|..+.+.+..+..++...=.....|.+++..|+.++.++
T Consensus 42 ~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~l 86 (108)
T PF02403_consen 42 QQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKEL 86 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHH
Confidence 334444444444444443333321001223444444444444443
No 153
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=64.47 E-value=43 Score=26.29 Aligned_cols=42 Identities=21% Similarity=0.252 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----H----HHHHHHHHHHHHHHHH
Q 024834 109 RTASLEDEVVRLRAVNQQLLKRLQG----Q----AALEAEVARLKCLLVD 150 (262)
Q Consensus 109 HleeLE~QV~qLraeNqqLl~rLq~----~----a~LEaEn~rLRaqL~e 150 (262)
+-+++|.++..--.|.+.+..+|-. + ..-|.|+.+||.+|..
T Consensus 26 ~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eLe~ 75 (79)
T PF08581_consen 26 QKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIARLRRELEQ 75 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5566666666666666666666532 1 2346788888887643
No 154
>PHA02675 ORF104 fusion protein; Provisional
Probab=64.44 E-value=44 Score=27.29 Aligned_cols=29 Identities=21% Similarity=0.313 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhccccc
Q 024834 135 AALEAEVARLKCLLVDIRGRIEGEIGSFP 163 (262)
Q Consensus 135 a~LEaEn~rLRaqL~elrgri~~~iG~fp 163 (262)
..||.....||.-|..|..+|+-..|--+
T Consensus 61 ~RLE~H~ETLRk~Ml~L~KKIDVQTG~~r 89 (90)
T PHA02675 61 DRLERHLETLREALLKLNTKIDVQTGYSR 89 (90)
T ss_pred HHHHHHHHHHHHHHHHHHhhcceeccccC
Confidence 56788999999999999999997666433
No 155
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=64.29 E-value=45 Score=29.11 Aligned_cols=22 Identities=32% Similarity=0.437 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024834 111 ASLEDEVVRLRAVNQQLLKRLQ 132 (262)
Q Consensus 111 eeLE~QV~qLraeNqqLl~rLq 132 (262)
.+|..+|.+|+++|.+|..+++
T Consensus 92 k~L~~~v~~Le~e~r~L~~~~~ 113 (158)
T PF09744_consen 92 KDLQSQVEQLEEENRQLELKLK 113 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3466667777777777776665
No 156
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=63.92 E-value=35 Score=32.64 Aligned_cols=72 Identities=21% Similarity=0.316 Sum_probs=49.0
Q ss_pred hHHHhhccCcccHH-----HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHh
Q 024834 84 TEKKTKKRPLGNRE-----AVRKYREKK-KARTASLEDEVVRLRAVNQQLLKRLQ----GQAALEAEVARLKCLLVDIRG 153 (262)
Q Consensus 84 ~d~RK~KRmlsNRE-----SARRSR~RK-QaHleeLE~QV~qLraeNqqLl~rLq----~~a~LEaEn~rLRaqL~elrg 153 (262)
.++|=+|=|++|-. ++.-|.--- |..|++||+.+.+|+.++....+.+. .+..|..|+..||.+|.+.-.
T Consensus 89 vEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~rde 168 (302)
T PF09738_consen 89 VEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQRDE 168 (302)
T ss_pred HHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888988753 777777666 77889999999999988754443332 244566666666666654444
Q ss_pred hh
Q 024834 154 RI 155 (262)
Q Consensus 154 ri 155 (262)
.|
T Consensus 169 li 170 (302)
T PF09738_consen 169 LI 170 (302)
T ss_pred HH
Confidence 33
No 157
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=63.85 E-value=79 Score=26.53 Aligned_cols=46 Identities=20% Similarity=0.122 Sum_probs=36.0
Q ss_pred HhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 87 KTKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQ 132 (262)
Q Consensus 87 RK~KRmlsNRESARRSR~RKQaHleeLE~QV~qLraeNqqLl~rLq 132 (262)
+|+.+..+.-+.|.+.+..=.+..++.+.++...+.+-++++....
T Consensus 53 ~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~A~~ea~~ii~~A~ 98 (156)
T CHL00118 53 ERKEYIRKNLTKASEILAKANELTKQYEQELSKARKEAQLEITQSQ 98 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777788888888888888888888888888888777776654
No 158
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=63.64 E-value=30 Score=24.42 Aligned_cols=35 Identities=34% Similarity=0.330 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 111 ASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLL 148 (262)
Q Consensus 111 eeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL 148 (262)
+-|...-..|++++..|.+. ...|.+|+..|+..+
T Consensus 8 ~~LK~~yd~Lk~~~~~L~~E---~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 8 DALKASYDSLKAEYDSLKKE---NEKLRAEVQELKEKL 42 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhh
Confidence 34555556666666666554 355667777776654
No 159
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=63.62 E-value=63 Score=28.46 Aligned_cols=50 Identities=24% Similarity=0.300 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024834 102 YREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGR 154 (262)
Q Consensus 102 SR~RKQaHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrgr 154 (262)
.-...+..+++++.++..|+...+++.+++. ....++..+|..+...+..
T Consensus 57 ~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~---~~r~~l~~~~~~l~~~~~~ 106 (302)
T PF10186_consen 57 EIQQLKREIEELRERLERLRERIERLRKRIE---QKRERLEELRESLEQRRSR 106 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 3344455555666666666666666666653 2334444444444444333
No 160
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=63.57 E-value=45 Score=30.65 Aligned_cols=24 Identities=13% Similarity=0.124 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 109 RTASLEDEVVRLRAVNQQLLKRLQ 132 (262)
Q Consensus 109 HleeLE~QV~qLraeNqqLl~rLq 132 (262)
-+-+|..|+..|+.|..+|.-.+.
T Consensus 55 ~~~~l~~ql~~lq~ev~~LrG~~E 78 (263)
T PRK10803 55 LLTQLQQQLSDNQSDIDSLRGQIQ 78 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHH
Confidence 355778888888888877776664
No 161
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=63.44 E-value=56 Score=28.49 Aligned_cols=62 Identities=23% Similarity=0.348 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhhhccccc
Q 024834 102 YREKKKARTASLEDEVVRLRAVNQQLLKRLQGQ-AALEAEVARLKCLLVDIRGRIEGEIGSFP 163 (262)
Q Consensus 102 SR~RKQaHleeLE~QV~qLraeNqqLl~rLq~~-a~LEaEn~rLRaqL~elrgri~~~iG~fp 163 (262)
.+..-++.+..|..++.+-+..-+.++..|... ..+..+...|+.....+...|.++.|..|
T Consensus 104 ~~~~~~~~i~~L~~~i~~~q~~~~~~i~~L~~f~~~l~~D~~~l~~~~~~l~~~l~~~~g~I~ 166 (184)
T PF05791_consen 104 DKEDLKEIIEDLQDQIQKNQDKVQALINELNDFKDKLQKDSRNLKTDVDELQSILAGENGDIP 166 (184)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--HH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccCCHH
Confidence 344555677777777777777777777777653 35666777777777777777766666554
No 162
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=63.25 E-value=63 Score=29.61 Aligned_cols=46 Identities=9% Similarity=0.153 Sum_probs=30.8
Q ss_pred HhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 87 KTKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQ 132 (262)
Q Consensus 87 RK~KRmlsNRESARRSR~RKQaHleeLE~QV~qLraeNqqLl~rLq 132 (262)
+|+++..++-+.|.+.|..=++..++-+.++..++.+-++++...+
T Consensus 36 eR~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~A~ 81 (250)
T PRK14474 36 KRQQRIANRWQDAEQRQQEAGQEAERYRQKQQSLEQQRASFMAQAQ 81 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666777777777777666777777777777666666655543
No 163
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=63.16 E-value=23 Score=33.31 Aligned_cols=23 Identities=39% Similarity=0.468 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 024834 110 TASLEDEVVRLRAVNQQLLKRLQ 132 (262)
Q Consensus 110 leeLE~QV~qLraeNqqLl~rLq 132 (262)
++.|+.++..||.+|++|..+++
T Consensus 34 ~~~l~~~~~~lr~e~~~l~~~~~ 56 (308)
T PF11382_consen 34 IDSLEDQFDSLREENDELRAELD 56 (308)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHH
Confidence 45667777777777777766653
No 164
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=63.13 E-value=84 Score=25.79 Aligned_cols=46 Identities=13% Similarity=0.236 Sum_probs=37.4
Q ss_pred HhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 87 KTKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQ 132 (262)
Q Consensus 87 RK~KRmlsNRESARRSR~RKQaHleeLE~QV~qLraeNqqLl~rLq 132 (262)
+|+.+..++-+.|...|..-++.+++.+.++.+.+.+-.+++....
T Consensus 35 ~R~~~I~~~l~~a~~~~~~a~~~~~e~~~~l~~a~~ea~~i~~~a~ 80 (156)
T PRK05759 35 ERQKKIADGLAAAERAKKELELAQAKYEAQLAEARAEAAEIIEQAK 80 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777778888888888888899999998888888888777764
No 165
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=63.01 E-value=7.4 Score=27.88 Aligned_cols=16 Identities=25% Similarity=0.393 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 024834 105 KKKARTASLEDEVVRL 120 (262)
Q Consensus 105 RKQaHleeLE~QV~qL 120 (262)
|.++++++||.|+++|
T Consensus 52 ~~~k~l~~le~e~~~l 67 (68)
T PF06305_consen 52 RLRKELKKLEKELEQL 67 (68)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 3344445555554444
No 166
>PF07767 Nop53: Nop53 (60S ribosomal biogenesis); InterPro: IPR011687 This entry contains sequences that bear similarity to the glioma tumour suppressor candidate region gene 2 protein (p60) []. This protein has been found to interact with herpes simplex type 1 regulatory proteins, but its exact role in the life cycle of the virus is not known [].
Probab=62.45 E-value=73 Score=30.54 Aligned_cols=44 Identities=25% Similarity=0.373 Sum_probs=25.9
Q ss_pred HhhccCcccHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 024834 87 KTKKRPLGNREAVRKYREKKKARTA---SLEDEVVRLRAVNQQLLKR 130 (262)
Q Consensus 87 RK~KRmlsNRESARRSR~RKQaHle---eLE~QV~qLraeNqqLl~r 130 (262)
+|+-|..+||+..++-+++++++.. .+..+|.+|+..+.+|..+
T Consensus 276 kkKTk~qRnK~~r~k~~~~~~~~~k~~k~~~~~i~~l~~i~~ei~~~ 322 (387)
T PF07767_consen 276 KKKTKAQRNKEKRRKEEERKEKERKKEKKKIKQIDRLKEIAKEIEKE 322 (387)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667788877777777666443 3444455555555555444
No 167
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=62.45 E-value=66 Score=30.69 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 024834 135 AALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 135 a~LEaEn~rLRaqL~elrgri~ 156 (262)
+..|+++..++.++.++++|+.
T Consensus 217 ~~~Eke~~e~~~~i~e~~~rl~ 238 (269)
T PF05278_consen 217 KQKEKEVKEIKERITEMKGRLG 238 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666554
No 168
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=61.99 E-value=27 Score=31.04 Aligned_cols=44 Identities=32% Similarity=0.437 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024834 110 TASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 110 leeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrgri~ 156 (262)
...|+.+..+|+.++.+|..+ +..|+.|+..|..++..+..-..
T Consensus 99 ~~~~~~e~~~l~~e~~~l~~~---~e~Le~e~~~L~~~~~~~~eDY~ 142 (161)
T TIGR02894 99 DQALQKENERLKNQNESLQKR---NEELEKELEKLRQRLSTIEEDYQ 142 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555444 46677888888777766555433
No 169
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=61.82 E-value=36 Score=34.88 Aligned_cols=33 Identities=24% Similarity=0.232 Sum_probs=18.1
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 94 GNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRL 131 (262)
Q Consensus 94 sNRESARRSR~RKQaHleeLE~QV~qLraeNqqLl~rL 131 (262)
+-=||.|.|++ .++.+++. ++|+.+++.+..++
T Consensus 328 sqleSqr~y~e---~~~~e~~q--sqlen~k~~~e~~~ 360 (493)
T KOG0804|consen 328 SQLESQRKYYE---QIMSEYEQ--SQLENQKQYYELLI 360 (493)
T ss_pred hhhhHHHHHHH---HHHHHHHH--HHHHhHHHHHHHHH
Confidence 34578888887 55555555 44444444444444
No 170
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=61.80 E-value=44 Score=29.79 Aligned_cols=30 Identities=17% Similarity=0.171 Sum_probs=14.4
Q ss_pred cCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 91 RPLGNREAVRKYREKKKARTASLEDEVVRL 120 (262)
Q Consensus 91 RmlsNRESARRSR~RKQaHleeLE~QV~qL 120 (262)
.+|...-+.+..+.+++.++..|+.++.+-
T Consensus 93 ~RL~kLL~lk~~~~~~~e~~k~le~~~~~~ 122 (190)
T PF05266_consen 93 SRLNKLLSLKDDQEKLLEERKKLEKKIEEK 122 (190)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555555555554443
No 171
>KOG4348 consensus Adaptor protein CMS/SETA [Signal transduction mechanisms]
Probab=61.28 E-value=24 Score=36.38 Aligned_cols=49 Identities=27% Similarity=0.361 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhhhhhc
Q 024834 105 KKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVD---IRGRIEGEI 159 (262)
Q Consensus 105 RKQaHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~e---lrgri~~~i 159 (262)
-||.-+++|..||.+|+--...|.+.- ..|+..||..|.+ +|.+|+.+|
T Consensus 566 ~~k~s~delr~qi~el~~ive~lk~~~------~kel~kl~~dleeek~mr~~lemei 617 (627)
T KOG4348|consen 566 VKKNSLDELRAQIIELLCIVEALKKDH------GKELEKLRKDLEEEKTMRSNLEMEI 617 (627)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHhhhHhhH
Confidence 478889999999999887666555442 2455555555544 455554443
No 172
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=60.92 E-value=59 Score=33.23 Aligned_cols=29 Identities=14% Similarity=0.257 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhc-ccccc
Q 024834 136 ALEAEVARLKCLLVDIRGRIEGEI-GSFPY 164 (262)
Q Consensus 136 ~LEaEn~rLRaqL~elrgri~~~i-G~fp~ 164 (262)
.++++...|+.++.+.+.++.... +.+|+
T Consensus 266 ~Le~ei~~le~e~~e~~~~l~~l~~~~~p~ 295 (650)
T TIGR03185 266 QLERQLKEIEAARKANRAQLRELAADPLPL 295 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCH
Confidence 566777777777777777666544 34453
No 173
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=60.19 E-value=45 Score=29.43 Aligned_cols=52 Identities=15% Similarity=0.152 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhhhh
Q 024834 106 KKARTASLEDEVVRLRAVNQQLLKRLQGQAAL--EAEVARLKCLLVDIRGRIEG 157 (262)
Q Consensus 106 KQaHleeLE~QV~qLraeNqqLl~rLq~~a~L--EaEn~rLRaqL~elrgri~~ 157 (262)
=++|++.|++++++|+..-.++...+-.|..| ..|+..+..+|..|..+|..
T Consensus 90 Le~~~~~l~~ri~eLe~~l~~kad~vvsYqll~hr~e~ee~~~~l~~le~~~~~ 143 (175)
T PRK13182 90 LEAQLNTITRRLDELERQLQQKADDVVSYQLLQHRREMEEMLERLQKLEARLKK 143 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777777666666544433 35666677777777776664
No 174
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=60.15 E-value=1.1e+02 Score=26.05 Aligned_cols=50 Identities=12% Similarity=0.334 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhh
Q 024834 106 KKARTASLEDEVVRLRAVNQQLLKRLQG----QAALEAEVARLKCLLVDIRGRI 155 (262)
Q Consensus 106 KQaHleeLE~QV~qLraeNqqLl~rLq~----~a~LEaEn~rLRaqL~elrgri 155 (262)
=.++|+.|..++.+..+..+++.+.+.. ...+..++..+...+..|.++|
T Consensus 66 LsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki 119 (126)
T PF07889_consen 66 LSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKI 119 (126)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555431 2233334444444444444444
No 175
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=60.14 E-value=41 Score=28.48 Aligned_cols=43 Identities=21% Similarity=0.396 Sum_probs=33.1
Q ss_pred hhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 88 TKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQ 132 (262)
Q Consensus 88 K~KRmlsNRESARRSR~RKQaHleeLE~QV~qLraeNqqLl~rLq 132 (262)
..--+|-+.|.||--++|.++ +.++.+|+.|++....+..++.
T Consensus 34 ae~q~L~~kE~~r~~~~k~~a--e~a~~~L~~~~~~~~~i~e~~~ 76 (126)
T PF09403_consen 34 AEYQQLEQKEEARYNEEKQEA--EAAEAELAELKELYAEIEEKIE 76 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhHHHHHH
Confidence 455678889999987776655 4788888888888877777765
No 176
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=60.13 E-value=80 Score=26.32 Aligned_cols=44 Identities=9% Similarity=0.083 Sum_probs=27.4
Q ss_pred hhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 88 TKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRL 131 (262)
Q Consensus 88 K~KRmlsNRESARRSR~RKQaHleeLE~QV~qLraeNqqLl~rL 131 (262)
|+.+..++.+.|.+.|..=..-..+-+..+..-|.+-+.+....
T Consensus 39 R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~Ar~eA~~~~~~a 82 (141)
T PRK08476 39 RNASIKNDLEKVKTNSSDVSEIEHEIETILKNAREEANKIRQKA 82 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666667777666666666666666666666665555554
No 177
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=60.09 E-value=94 Score=26.67 Aligned_cols=46 Identities=17% Similarity=0.195 Sum_probs=35.8
Q ss_pred HhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 87 KTKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQ 132 (262)
Q Consensus 87 RK~KRmlsNRESARRSR~RKQaHleeLE~QV~qLraeNqqLl~rLq 132 (262)
+|+.+...+-+.|.+.|..=++.+++-+.++.+-+.+-++++....
T Consensus 58 ~R~~~I~~~l~~Ae~~~~eA~~~l~e~e~~L~~A~~ea~~Ii~~A~ 103 (184)
T PRK13455 58 KRAEGIRSELEEARALREEAQTLLASYERKQREVQEQADRIVAAAK 103 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777888888888888888888888888888877777643
No 178
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=59.81 E-value=81 Score=27.64 Aligned_cols=44 Identities=9% Similarity=0.046 Sum_probs=31.6
Q ss_pred HhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 87 KTKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKR 130 (262)
Q Consensus 87 RK~KRmlsNRESARRSR~RKQaHleeLE~QV~qLraeNqqLl~r 130 (262)
+|+.+..++-++|.+.+..=.+-.++.++++..-+++-+++...
T Consensus 41 ~R~~~I~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e 84 (155)
T PRK06569 41 NRQTNIQDNITQADTLTIEVEKLNKYYNEEIDKTNTEIDRLKKE 84 (155)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777778888877777777777777777777777666444
No 179
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=59.51 E-value=98 Score=26.34 Aligned_cols=46 Identities=4% Similarity=0.075 Sum_probs=34.0
Q ss_pred HhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 87 KTKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQ 132 (262)
Q Consensus 87 RK~KRmlsNRESARRSR~RKQaHleeLE~QV~qLraeNqqLl~rLq 132 (262)
.|+++..+.-+.|.+.|..=++-+++.+.++...+.+-++++...+
T Consensus 50 ~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~L~~a~~ea~~ii~~a~ 95 (174)
T PRK07352 50 ERREAILQALKEAEERLRQAAQALAEAQQKLAQAQQEAERIRADAK 95 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677777788888777777777777777777777777776654
No 180
>PRK15396 murein lipoprotein; Provisional
Probab=59.46 E-value=53 Score=25.84 Aligned_cols=48 Identities=21% Similarity=0.264 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 024834 109 RTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIEGEI 159 (262)
Q Consensus 109 HleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrgri~~~i 159 (262)
.+++|..||..|..+-.+|...++ .+..++..-+.+......||+--.
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~---~~~~~~~~a~~eA~raN~RlDn~~ 73 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVN---AMRSDVQAAKDDAARANQRLDNQA 73 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577778888888777777766653 334444444455555566666443
No 181
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=59.42 E-value=34 Score=24.66 Aligned_cols=23 Identities=30% Similarity=0.323 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 024834 108 ARTASLEDEVVRLRAVNQQLLKR 130 (262)
Q Consensus 108 aHleeLE~QV~qLraeNqqLl~r 130 (262)
..++.|+.+...|+.++..|...
T Consensus 33 ~~~~~L~~en~~L~~~~~~L~~~ 55 (64)
T PF00170_consen 33 EKVEELESENEELKKELEQLKKE 55 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444
No 182
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=59.19 E-value=85 Score=26.06 Aligned_cols=23 Identities=26% Similarity=0.242 Sum_probs=10.2
Q ss_pred cCcccHHHHHHHHHHHHHHHHHH
Q 024834 91 RPLGNREAVRKYREKKKARTASL 113 (262)
Q Consensus 91 RmlsNRESARRSR~RKQaHleeL 113 (262)
+.+..-+.+.+.-.+|++.++.|
T Consensus 114 ~~~~~~~~~~~~l~~k~~~~~kl 136 (218)
T cd07596 114 DALLTLQSLKKDLASKKAQLEKL 136 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444443333
No 183
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=59.06 E-value=90 Score=27.72 Aligned_cols=25 Identities=16% Similarity=0.266 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 107 KARTASLEDEVVRLRAVNQQLLKRL 131 (262)
Q Consensus 107 QaHleeLE~QV~qLraeNqqLl~rL 131 (262)
++.++.|+.++.+++..-.+|..+|
T Consensus 98 ~~~~~~l~~~~~~~~~~v~~l~~~l 122 (219)
T TIGR02977 98 QELAEALERELAAVEETLAKLQEDI 122 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666655555555
No 184
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=59.04 E-value=53 Score=27.49 Aligned_cols=22 Identities=23% Similarity=0.293 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024834 110 TASLEDEVVRLRAVNQQLLKRL 131 (262)
Q Consensus 110 leeLE~QV~qLraeNqqLl~rL 131 (262)
..++...+.+|+.+++...+++
T Consensus 92 ~~~~a~~~~~l~~~Le~ae~~~ 113 (139)
T PF13935_consen 92 NEDIALDVQKLRVELEAAEKRI 113 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555444
No 185
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=58.96 E-value=10 Score=26.79 Aligned_cols=42 Identities=26% Similarity=0.287 Sum_probs=8.7
Q ss_pred hhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 88 TKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKR 130 (262)
Q Consensus 88 K~KRmlsNRESARRSR~RKQaHleeLE~QV~qLraeNqqLl~r 130 (262)
|+|+...|||=|+..=... ..+.+||.++.+|..||-.|..+
T Consensus 2 k~k~~~qn~~laK~Ns~l~-~ki~~le~~~s~L~~en~~lR~~ 43 (46)
T PF07558_consen 2 KEKYSRQNRELAKRNSALS-IKIQELENEVSKLLNENVNLREL 43 (46)
T ss_dssp -----------------------------HHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhHhHHHH-hHHHHHHhHHHHHHHHHHHHHHH
Confidence 4556666777666543332 34666666666666666655544
No 186
>PRK14127 cell division protein GpsB; Provisional
Probab=58.82 E-value=31 Score=28.65 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 024834 135 AALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 135 a~LEaEn~rLRaqL~elrgri~ 156 (262)
..|+.|+.+|+.++.++..++.
T Consensus 47 ~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 47 EELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 4456666777777777766655
No 187
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=58.71 E-value=42 Score=32.00 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 108 ARTASLEDEVVRLRAVNQQLLKRL 131 (262)
Q Consensus 108 aHleeLE~QV~qLraeNqqLl~rL 131 (262)
...++|..++..+.+++..|++++
T Consensus 135 e~~ee~kekl~E~~~EkeeL~~el 158 (290)
T COG4026 135 EDYEELKEKLEELQKEKEELLKEL 158 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555554
No 188
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=58.54 E-value=1e+02 Score=26.57 Aligned_cols=40 Identities=30% Similarity=0.293 Sum_probs=22.0
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 92 PLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRL 131 (262)
Q Consensus 92 mlsNRESARRSR~RKQaHleeLE~QV~qLraeNqqLl~rL 131 (262)
...|++.|-+-=+-+++-+..|++++..+..+.++|...|
T Consensus 36 ~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL 75 (140)
T PF10473_consen 36 SQENKECLILDAENSKAEIETLEEELEELTSELNQLELEL 75 (140)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555556666666666655555555554444
No 189
>PF15556 Zwint: ZW10 interactor
Probab=58.22 E-value=70 Score=30.09 Aligned_cols=64 Identities=14% Similarity=0.147 Sum_probs=33.1
Q ss_pred cCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 024834 91 RPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIEG 157 (262)
Q Consensus 91 RmlsNRESARRSR~RKQaHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrgri~~ 157 (262)
-|...|.|...-...-++||..|.+-.+++|..-..-..+| ..|-.|+..|+.+...-+.++..
T Consensus 117 a~eK~r~AQkqwqlqQeK~LQ~Lae~sAEvrerq~~~qqeL---e~l~qeL~~lkqQa~qeqdKLQR 180 (252)
T PF15556_consen 117 AMEKLRAAQKQWQLQQEKHLQHLAEVSAEVRERQTGTQQEL---ERLYQELGTLKQQAGQEQDKLQR 180 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445554444444444555555554444443333222222 34556777777777776666664
No 190
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=58.17 E-value=42 Score=31.38 Aligned_cols=46 Identities=20% Similarity=0.138 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc
Q 024834 115 DEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIEGEIG 160 (262)
Q Consensus 115 ~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrgri~~~iG 160 (262)
....++..+|++|..++.+...+..++..|+.+...|+.-++....
T Consensus 66 ~~~~~~~~en~~Lk~~l~~~~~~~~~~~~l~~EN~~Lr~lL~~~~~ 111 (284)
T COG1792 66 KSLKDLALENEELKKELAELEQLLEEVESLEEENKRLKELLDFKES 111 (284)
T ss_pred HHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 3456777889999999988888999999999999999887775443
No 191
>PF12737 Mating_C: C-terminal domain of homeodomain 1; InterPro: IPR024441 Mating in fungi is controlled by the loci that determine the mating type of an individual, and only individuals with differing mating types can mate. Basidiomycete fungi have evolved a unique mating system, termed tetrapolar or bifactorial incompatibility, in which mating type is determined by two unlinked loci; compatibility at both loci is required for mating to occur. The multi-allelic tetrapolar mating system is considered to be a novel innovation that could have only evolved once, and is thus unique to the mushroom fungi. This domain is found in the C-terminal of some mating-type proteins.
Probab=57.68 E-value=11 Score=37.53 Aligned_cols=25 Identities=32% Similarity=0.302 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 100 RKYREKKKARTASLEDEVVRLRAVN 124 (262)
Q Consensus 100 RRSR~RKQaHleeLE~QV~qLraeN 124 (262)
--.|+=|++++++||+|+.+|++|.
T Consensus 394 ~~~~~AK~reL~eLeAq~~aL~AEL 418 (419)
T PF12737_consen 394 EAEREAKRRELEELEAQARALRAEL 418 (419)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3467789999999999999999884
No 192
>KOG3540 consensus Beta amyloid precursor protein [General function prediction only]
Probab=57.58 E-value=20 Score=37.25 Aligned_cols=43 Identities=28% Similarity=0.277 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 024834 108 ARTASLEDEVVRLRAVNQQLLKRLQG-QAALEAEVARLKCLLVD 150 (262)
Q Consensus 108 aHleeLE~QV~qLraeNqqLl~rLq~-~a~LEaEn~rLRaqL~e 150 (262)
+.-+++|.|.+.=+++.++|..+.|. ...||.|.++.|++|++
T Consensus 271 kEW~~ae~qaKnPKAekqalnqhFQ~~v~sLEee~a~erqqlve 314 (615)
T KOG3540|consen 271 KEWEEAETQAKNPKAEKQALNQHFQKTVSSLEEEAARERQQLVE 314 (615)
T ss_pred HHHHHHHhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566677766677777777777775 45788888888888876
No 193
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=57.40 E-value=27 Score=27.70 Aligned_cols=27 Identities=19% Similarity=0.212 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 108 ARTASLEDEVVRLRAVNQQLLKRLQGQ 134 (262)
Q Consensus 108 aHleeLE~QV~qLraeNqqLl~rLq~~ 134 (262)
..|.+.++|+.+|.....+|..+|..|
T Consensus 12 ~kL~~K~eEI~rLn~lv~sLR~KLiKY 38 (76)
T PF11544_consen 12 KKLNDKQEEIDRLNILVGSLRGKLIKY 38 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666667777777777777777543
No 194
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=56.81 E-value=55 Score=34.72 Aligned_cols=17 Identities=35% Similarity=0.483 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 024834 105 KKKARTASLEDEVVRLR 121 (262)
Q Consensus 105 RKQaHleeLE~QV~qLr 121 (262)
+.++.++.|++++++++
T Consensus 447 e~k~eie~L~~~l~~~~ 463 (652)
T COG2433 447 ELKREIEKLESELERFR 463 (652)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444433
No 195
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=56.51 E-value=90 Score=32.16 Aligned_cols=43 Identities=26% Similarity=0.297 Sum_probs=31.6
Q ss_pred ccCcccHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q 024834 90 KRPLGNREAVRKYREKKKAR----TASLEDEVVRLRAVNQQLLKRLQ 132 (262)
Q Consensus 90 KRmlsNRESARRSR~RKQaH----leeLE~QV~qLraeNqqLl~rLq 132 (262)
+--++|=||++++=+||.++ ++++..|+..++.+|..|.+.++
T Consensus 367 ~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~ 413 (493)
T KOG0804|consen 367 KQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQD 413 (493)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 45567888888888877654 45677777888888877776654
No 196
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=56.49 E-value=62 Score=28.86 Aligned_cols=52 Identities=21% Similarity=0.293 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024834 102 YREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 102 SR~RKQaHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrgri~ 156 (262)
...++..++.+||..+-+|+.+.+.+.... ....+|+++|+.....|...+.
T Consensus 125 ~~~~~e~~i~~Le~ki~el~~~~~~~~~~k---e~~~~ei~~lks~~~~l~~~~~ 176 (190)
T PF05266_consen 125 ELKELESEIKELEMKILELQRQAAKLKEKK---EAKDKEISRLKSEAEALKEEIE 176 (190)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 334445566666666666666655555442 3344666666666666555443
No 197
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=56.40 E-value=36 Score=31.81 Aligned_cols=26 Identities=8% Similarity=0.023 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 96 REAVRKYREKKKARTASLEDEVVRLR 121 (262)
Q Consensus 96 RESARRSR~RKQaHleeLE~QV~qLr 121 (262)
+.++++.+.-=++++++++.++...+
T Consensus 165 ~~~~~~a~~fl~~ql~~~~~~l~~ae 190 (362)
T TIGR01010 165 ERARKDTIAFAENEVKEAEQRLNATK 190 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444433444444444444433
No 198
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=56.35 E-value=38 Score=29.01 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 024834 135 AALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 135 a~LEaEn~rLRaqL~elrgri~ 156 (262)
..+++|++.++.++..-+.+++
T Consensus 76 ~kl~~el~~~~~~~~~~~~~~~ 97 (161)
T PF04420_consen 76 DKLEEELEKLNKSLSSEKSSFD 97 (161)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555554433333
No 199
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=56.33 E-value=69 Score=27.60 Aligned_cols=50 Identities=28% Similarity=0.365 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHhhhh
Q 024834 107 KARTASLEDEVVRLRAVNQQLLKRLQG------------QAALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 107 QaHleeLE~QV~qLraeNqqLl~rLq~------------~a~LEaEn~rLRaqL~elrgri~ 156 (262)
++=++.|++|+++|+.+..++.++++. |.+-..+...+...+.+|..+|.
T Consensus 10 ~eg~~~L~~EL~~L~~~r~~i~~~i~~Ar~~GDlsENaey~aak~~q~~~e~RI~~L~~~L~ 71 (158)
T PRK05892 10 PAARDHLEAELARLRARRDRLAVEVNDRGMIGDHGDQAEAIQRADELARLDDRINELDRRLR 71 (158)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678889999998888888777741 44444555566666666666666
No 200
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=56.29 E-value=51 Score=30.13 Aligned_cols=17 Identities=41% Similarity=0.448 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 024834 134 QAALEAEVARLKCLLVD 150 (262)
Q Consensus 134 ~a~LEaEn~rLRaqL~e 150 (262)
+..|+.|+.-||..+..
T Consensus 62 aK~l~eEledLk~~~~~ 78 (193)
T PF14662_consen 62 AKALEEELEDLKTLAKS 78 (193)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44455555555544443
No 201
>PF02346 Vac_Fusion: Chordopoxvirus fusion protein; InterPro: IPR003436 This is a family of viral fusion proteins from the Chordopoxvirinae. A 14kDa Vaccinia virus protein has been demonstrated to function as a viral fusion protein mediating cell fusion at endosmomal (low) pH []. The protein, found in the envelope fraction of the virions, is required for fusing the outermost of the two golgi-derived membranes enveloping the virus with the plasma membrane, and its subsequent release extracellularly. The N-terminal proximal region is essential for its fusion ability.; GO: 0019064 viral envelope fusion with host membrane, 0019031 viral envelope
Probab=56.27 E-value=81 Score=23.64 Aligned_cols=51 Identities=18% Similarity=0.268 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhhhhhcc
Q 024834 110 TASLEDEVVRLRAVNQQLLKRLQG----QAALEAEVARLKCLLVDIRGRIEGEIG 160 (262)
Q Consensus 110 leeLE~QV~qLraeNqqLl~rLq~----~a~LEaEn~rLRaqL~elrgri~~~iG 160 (262)
+++++..+..|+.......+.... ...||...+.||.-+..|..+|+-..|
T Consensus 3 ~k~~~~rl~~Lek~~~~~~~~c~~~~~~i~RLE~H~ETlRk~mv~L~kKiDvQTG 57 (57)
T PF02346_consen 3 IKDIEERLMVLEKDFRNAIKCCKENSEAIKRLEHHIETLRKYMVILAKKIDVQTG 57 (57)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhccccCC
Confidence 567777777777777777776642 457899999999999999999885543
No 202
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=56.26 E-value=31 Score=31.89 Aligned_cols=17 Identities=29% Similarity=0.298 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHhhhh
Q 024834 140 EVARLKCLLVDIRGRIE 156 (262)
Q Consensus 140 En~rLRaqL~elrgri~ 156 (262)
|..||-.+-..++.+|+
T Consensus 194 EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 194 EYDRLLEEYSKLQEQIE 210 (216)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 33444444444444444
No 203
>PF03233 Cauli_AT: Aphid transmission protein; InterPro: IPR004917 This protein is found in various caulimoviruses. It codes for an 18 kDa protein (PII), which is dispensable for infection but which is required for aphid transmission of the virus []. This protein interacts with the PIII protein []. ; GO: 0019089 transmission of virus
Probab=56.24 E-value=36 Score=30.35 Aligned_cols=50 Identities=18% Similarity=0.329 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc
Q 024834 111 ASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIEGEIG 160 (262)
Q Consensus 111 eeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrgri~~~iG 160 (262)
+++..++..|+.+++.|...|--...++..+.-+-..|.+++..|..-||
T Consensus 114 ~e~snki~kLe~~~k~L~d~Iv~~~~i~e~IKd~de~L~~I~d~iK~Iig 163 (163)
T PF03233_consen 114 EEISNKIRKLETEVKKLKDNIVTEKLIEELIKDFDERLKEIRDKIKKIIG 163 (163)
T ss_pred HHHHHHHHHHHHHHHhHhhhccccHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 33444667777777777777766778888898888889999888877665
No 204
>COG3167 PilO Tfp pilus assembly protein PilO [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=56.09 E-value=36 Score=31.45 Aligned_cols=54 Identities=24% Similarity=0.300 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccc
Q 024834 106 KKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIEGEIGSFPYQK 166 (262)
Q Consensus 106 KQaHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrgri~~~iG~fp~qk 166 (262)
|++.++.|+.+-.+|+.+-++= +.--+-+..||+|+.+++.+++.-.=.+|-++
T Consensus 47 k~eel~~~~~eEe~LKs~~q~K-------~~~aanL~~lr~Ql~emee~~~~llrQLPs~t 100 (211)
T COG3167 47 KLEELEELEAEEEELKSTYQQK-------AIQAANLEALRAQLAEMEERFDILLRQLPSDT 100 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHhchHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 5566666666666555554332 22234556788888888888776554555443
No 205
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=55.80 E-value=65 Score=31.32 Aligned_cols=50 Identities=26% Similarity=0.227 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHhh
Q 024834 105 KKKARTASLEDEVVRLRAVNQQLLKRL--------QGQAALEAEVARLKCLLVDIRGR 154 (262)
Q Consensus 105 RKQaHleeLE~QV~qLraeNqqLl~rL--------q~~a~LEaEn~rLRaqL~elrgr 154 (262)
+...|+..|..+|.+|+.+-......- +.-..+..||.+|+..|..-..|
T Consensus 226 ~~~shI~~Lr~EV~RLR~qL~~sq~e~~~k~~~~~~eek~ireEN~rLqr~L~~E~er 283 (310)
T PF09755_consen 226 RLSSHIRSLRQEVSRLRQQLAASQQEHSEKMAQYLQEEKEIREENRRLQRKLQREVER 283 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777777776544333322 12345667777777766654444
No 206
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=55.55 E-value=65 Score=34.22 Aligned_cols=37 Identities=19% Similarity=0.250 Sum_probs=17.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 95 NREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRL 131 (262)
Q Consensus 95 NRESARRSR~RKQaHleeLE~QV~qLraeNqqLl~rL 131 (262)
-++.+++-|+.=++..++|+.+.++|+++...++.++
T Consensus 530 ~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~a 566 (771)
T TIGR01069 530 KNEHLEKLLKEQEKLKKELEQEMEELKERERNKKLEL 566 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444445555555555555444444
No 207
>PF04642 DUF601: Protein of unknown function, DUF601; InterPro: IPR006736 This family consists of several uncharacterised plant proteins which share a conserved region.
Probab=55.42 E-value=19 Score=34.64 Aligned_cols=49 Identities=18% Similarity=0.190 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhhh
Q 024834 108 ARTASLEDEVVRLRAVNQQLLKRLQ----GQAALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 108 aHleeLE~QV~qLraeNqqLl~rLq----~~a~LEaEn~rLRaqL~elrgri~ 156 (262)
.+|.++|.+|..|..-|..|-.+|. .|..+..--.++|++|..+..||.
T Consensus 217 dRmk~aEaqvneLEvsN~DLsaKLe~gknaY~~~ieke~q~raeL~acEEkl~ 269 (311)
T PF04642_consen 217 DRMKEAEAQVNELEVSNIDLSAKLEPGKNAYLAAIEKENQARAELNACEEKLK 269 (311)
T ss_pred HHHHHHHhhhhheecccHHHHHhhcCCcchHHHHHhhHHHHHHHHHHHHHHHh
Confidence 4567899999999999999999995 244333333466777776666655
No 208
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=55.28 E-value=7.4 Score=30.85 Aligned_cols=41 Identities=24% Similarity=0.293 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Q 024834 108 ARTASLEDEVVRLRAVNQQLLKRLQG----QAALEAEVARLKCLL 148 (262)
Q Consensus 108 aHleeLE~QV~qLraeNqqLl~rLq~----~a~LEaEn~rLRaqL 148 (262)
..|+.|..++..|..+|..|..++.. ...++.....|+..|
T Consensus 25 ~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l 69 (131)
T PF05103_consen 25 DFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRAL 69 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCT---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhh
Confidence 35677777777777777777666642 223344444444444
No 209
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=55.19 E-value=1e+02 Score=24.31 Aligned_cols=60 Identities=20% Similarity=0.217 Sum_probs=46.8
Q ss_pred cCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Q 024834 91 RPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQ----GQAALEAEVARLKCLLVD 150 (262)
Q Consensus 91 RmlsNRESARRSR~RKQaHleeLE~QV~qLraeNqqLl~rLq----~~a~LEaEn~rLRaqL~e 150 (262)
+|...++.++..=..|+..+..||+.+.+|.++...-.++.- ....|..|+..|+.++..
T Consensus 7 ~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~K 70 (96)
T PF08647_consen 7 SMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSK 70 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 445567777888888999999999999999999877766643 245778888888877765
No 210
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=54.74 E-value=67 Score=26.06 Aligned_cols=21 Identities=19% Similarity=0.322 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 024834 110 TASLEDEVVRLRAVNQQLLKR 130 (262)
Q Consensus 110 leeLE~QV~qLraeNqqLl~r 130 (262)
++.|++++..+..++++|..+
T Consensus 82 ~~~l~~~~~~~~~~~~~l~~~ 102 (118)
T PF13815_consen 82 LEQLEERLQELQQEIEKLKQK 102 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444333
No 211
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=54.59 E-value=56 Score=32.34 Aligned_cols=48 Identities=8% Similarity=0.069 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhh
Q 024834 108 ARTASLEDEVVRLRAVNQQLLKRLQ-GQAALEAEVARLKCLLVDIRGRI 155 (262)
Q Consensus 108 aHleeLE~QV~qLraeNqqLl~rLq-~~a~LEaEn~rLRaqL~elrgri 155 (262)
.++.+|+.|++.|....+++.+|+. .+.++|.-+++|.++..-|.+.+
T Consensus 413 ~~i~~l~~~i~~~~~rl~~~e~rl~~qF~ame~~~s~mns~~s~L~~q~ 461 (462)
T PRK08032 413 KTLKKLTKQYNAVSDSIDATIARYKAQFTQLDKLMTSLNSTSSYLTQQF 461 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455566666666666666666654 36777777777777776666544
No 212
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=54.58 E-value=61 Score=31.56 Aligned_cols=27 Identities=22% Similarity=0.298 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 107 KARTASLEDEVVRLRAVNQQLLKRLQG 133 (262)
Q Consensus 107 QaHleeLE~QV~qLraeNqqLl~rLq~ 133 (262)
+-.-..|.+||..|+.+|..+..+|..
T Consensus 77 ~~e~~~l~~qvs~l~~~~~~~r~~~~~ 103 (389)
T PF06216_consen 77 SNEWISLNDQVSHLQHQNSEQRQQIRE 103 (389)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556667777777776666666643
No 213
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=54.36 E-value=84 Score=28.95 Aligned_cols=25 Identities=12% Similarity=0.088 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 107 KARTASLEDEVVRLRAVNQQLLKRL 131 (262)
Q Consensus 107 QaHleeLE~QV~qLraeNqqLl~rL 131 (262)
..+|++++.+...|..|....++.|
T Consensus 31 e~~L~e~~kE~~~L~~Er~~h~eeL 55 (230)
T PF10146_consen 31 EKCLEEYRKEMEELLQERMAHVEEL 55 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555555555555555
No 214
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=54.28 E-value=88 Score=23.39 Aligned_cols=21 Identities=10% Similarity=0.332 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 024834 111 ASLEDEVVRLRAVNQQLLKRL 131 (262)
Q Consensus 111 eeLE~QV~qLraeNqqLl~rL 131 (262)
..|+..+..+|.+|++|.+.+
T Consensus 10 ~~~~~~i~tvk~en~~i~~~v 30 (55)
T PF05377_consen 10 PRIESSINTVKKENEEISESV 30 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555554443
No 215
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=54.28 E-value=1.4e+02 Score=25.62 Aligned_cols=46 Identities=7% Similarity=0.078 Sum_probs=33.5
Q ss_pred HhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 87 KTKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQ 132 (262)
Q Consensus 87 RK~KRmlsNRESARRSR~RKQaHleeLE~QV~qLraeNqqLl~rLq 132 (262)
+|+.+....-+.|...|..=++.+++.+.++...+.+-+.++...+
T Consensus 49 ~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~a~ 94 (173)
T PRK13453 49 KRERDINRDIDDAEQAKLNAQKLEEENKQKLKETQEEVQKILEDAK 94 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666677777777777777777888888777777777776654
No 216
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=54.21 E-value=1.3e+02 Score=25.35 Aligned_cols=34 Identities=18% Similarity=0.292 Sum_probs=19.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 95 NREAVRKYREKKKARTASLEDEVVRLRAVNQQLL 128 (262)
Q Consensus 95 NRESARRSR~RKQaHleeLE~QV~qLraeNqqLl 128 (262)
.....+.-++.++++++.++..++.+..+-..|.
T Consensus 117 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 117 DLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555666666666666666666666655
No 217
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=54.10 E-value=1.4e+02 Score=25.49 Aligned_cols=46 Identities=7% Similarity=0.105 Sum_probs=33.6
Q ss_pred HhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 87 KTKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQ 132 (262)
Q Consensus 87 RK~KRmlsNRESARRSR~RKQaHleeLE~QV~qLraeNqqLl~rLq 132 (262)
+|+.+....-+.|.+.|..=++.+++-+.++...+.+-++++...+
T Consensus 49 ~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~a~~ea~~ii~~A~ 94 (175)
T PRK14472 49 EREKGIQSSIDRAHSAKDEAEAILRKNRELLAKADAEADKIIREGK 94 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666777778888877777778888888777777777766654
No 218
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=54.09 E-value=1.2e+02 Score=27.96 Aligned_cols=20 Identities=30% Similarity=0.416 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q 024834 137 LEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 137 LEaEn~rLRaqL~elrgri~ 156 (262)
+++++..++.++..++..++
T Consensus 251 ~~~~l~~~~~~l~~~~~~l~ 270 (423)
T TIGR01843 251 AQARLAELRERLNKARDRLQ 270 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444433
No 219
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=53.84 E-value=76 Score=24.17 Aligned_cols=21 Identities=29% Similarity=0.379 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 024834 112 SLEDEVVRLRAVNQQLLKRLQ 132 (262)
Q Consensus 112 eLE~QV~qLraeNqqLl~rLq 132 (262)
.||.+|..|+..+.++.+++.
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~ 22 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNS 22 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 478888888888888888875
No 220
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=53.64 E-value=88 Score=31.98 Aligned_cols=26 Identities=31% Similarity=0.335 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 107 KARTASLEDEVVRLRAVNQQLLKRLQ 132 (262)
Q Consensus 107 QaHleeLE~QV~qLraeNqqLl~rLq 132 (262)
++.++.||.++.+|+++..+|...|.
T Consensus 562 ~~~~~~~e~~i~~le~~~~~l~~~l~ 587 (638)
T PRK10636 562 RKEIARLEKEMEKLNAQLAQAEEKLG 587 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44677888888888888888877774
No 221
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=53.62 E-value=45 Score=31.74 Aligned_cols=21 Identities=19% Similarity=0.436 Sum_probs=12.0
Q ss_pred HhhccCcccHHHHH-HHHHHHH
Q 024834 87 KTKKRPLGNREAVR-KYREKKK 107 (262)
Q Consensus 87 RK~KRmlsNRESAR-RSR~RKQ 107 (262)
|-.=+-++|||..- .+|.||+
T Consensus 127 R~~LK~IR~~E~sl~p~R~~r~ 148 (271)
T PF13805_consen 127 RIHLKSIRNREESLQPSRDRRR 148 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHhH
Confidence 44456678887653 3444444
No 222
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=53.47 E-value=63 Score=26.46 Aligned_cols=42 Identities=21% Similarity=0.261 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024834 111 ASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRI 155 (262)
Q Consensus 111 eeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrgri 155 (262)
.+|..|+.=.+.|-.-|.++| +.||.+|.+|+.+|..++...
T Consensus 4 aeLR~qLqFvEEEa~LlRRkl---~ele~eN~~l~~EL~kyk~~~ 45 (96)
T PF11365_consen 4 AELRRQLQFVEEEAELLRRKL---SELEDENKQLTEELNKYKSKY 45 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhc
Confidence 344445444444444455554 677899999999988887754
No 223
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=53.13 E-value=87 Score=24.77 Aligned_cols=10 Identities=50% Similarity=0.750 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q 024834 135 AALEAEVARL 144 (262)
Q Consensus 135 a~LEaEn~rL 144 (262)
..+++++.+|
T Consensus 35 ~~~e~ei~~l 44 (89)
T PF13747_consen 35 DELEEEIQRL 44 (89)
T ss_pred hhHHHHHHHH
Confidence 3344444333
No 224
>PF14335 DUF4391: Domain of unknown function (DUF4391)
Probab=53.00 E-value=34 Score=30.44 Aligned_cols=44 Identities=23% Similarity=0.359 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 103 REKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCL 147 (262)
Q Consensus 103 R~RKQaHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaq 147 (262)
|.-+.+++++|+.|+++|+++... .+.++....|-.|+.+|+.+
T Consensus 177 ~~~~~~~i~~L~kei~~L~~~~~k-Ekq~nrkveln~elk~l~~e 220 (221)
T PF14335_consen 177 RIERLEQIEKLEKEIAKLKKKIKK-EKQFNRKVELNTELKKLKKE 220 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHhc
Confidence 344455667777777777665431 11222344555666666654
No 225
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=52.99 E-value=67 Score=32.60 Aligned_cols=52 Identities=19% Similarity=0.095 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHhhhh
Q 024834 105 KKKARTASLEDEVVRLRAVNQQLLKRLQG----------QAALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 105 RKQaHleeLE~QV~qLraeNqqLl~rLq~----------~a~LEaEn~rLRaqL~elrgri~ 156 (262)
++++.++.||.++.+|+++...|...+.. ...+-.|...++.++.++..++.
T Consensus 565 ~~~~~~~~~e~~i~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 626 (635)
T PRK11147 565 KLQRELEQLPQLLEDLEAEIEALQAQVADADFFSQPHEQTQKVLADLADAEQELEVAFERWE 626 (635)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333999999999999999888888852 12333444555555555555444
No 226
>PF08549 SWI-SNF_Ssr4: Fungal domain of unknown function (DUF1750); InterPro: IPR013859 This is a fungal protein of unknown function.
Probab=52.98 E-value=44 Score=35.52 Aligned_cols=53 Identities=11% Similarity=0.298 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 97 EAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLV 149 (262)
Q Consensus 97 ESARRSR~RKQaHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~ 149 (262)
+=|--.|.|=.+|+++..+|+++|+++....+.+++....|..--.+||....
T Consensus 360 ~~aeeF~kRV~~~ia~~~AEIekmK~~Hak~m~k~k~~s~lk~AE~~LR~a~~ 412 (669)
T PF08549_consen 360 GKAEEFRKRVAKKIADMNAEIEKMKARHAKRMAKFKRNSLLKDAEKELRDAVE 412 (669)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccC
Confidence 45677899999999999999999999999999999876666655556666555
No 227
>PRK04863 mukB cell division protein MukB; Provisional
Probab=52.89 E-value=72 Score=36.64 Aligned_cols=20 Identities=5% Similarity=-0.087 Sum_probs=13.6
Q ss_pred hhccCcccHHHHHHHHHHHH
Q 024834 88 TKKRPLGNREAVRKYREKKK 107 (262)
Q Consensus 88 K~KRmlsNRESARRSR~RKQ 107 (262)
+.++....++.|++++.-++
T Consensus 322 rL~kLEkQaEkA~kyleL~e 341 (1486)
T PRK04863 322 AESDLEQDYQAASDHLNLVQ 341 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45566677788888776544
No 228
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=52.87 E-value=20 Score=30.36 Aligned_cols=40 Identities=23% Similarity=0.216 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 108 ARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVD 150 (262)
Q Consensus 108 aHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~e 150 (262)
..+..|-.|+..|++.-..|+.. +..|.-||..||..|.+
T Consensus 15 ~~l~~l~~el~~lK~~l~~lvEE---N~~L~lENe~LR~RL~~ 54 (114)
T COG4467 15 EQLGVLLAELGGLKQHLGSLVEE---NTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh---hHHHHhhHHHHHHHhCC
Confidence 34445555555555544444433 56666666666666666
No 229
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=52.60 E-value=77 Score=35.03 Aligned_cols=63 Identities=17% Similarity=0.323 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccc
Q 024834 97 EAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIEGEIGSF 162 (262)
Q Consensus 97 ESARRSR~RKQaHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrgri~~~iG~f 162 (262)
+.|+......++.+..++.+..+++.+.++....| ..++.++..|++++.+|..+|...-|+|
T Consensus 479 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l---~~~~~~~~~~~~~~~~l~~~L~p~~gSL 541 (1201)
T PF12128_consen 479 EQAQEQQNQAQQAVEELQAEEQELRKERDQAEEEL---RQARRELEELRAQIAELQRQLDPQKGSL 541 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhCCCCCcH
Confidence 44555555556666677777777777766666655 4467788888999999988888666665
No 230
>PF14282 FlxA: FlxA-like protein
Probab=52.55 E-value=40 Score=27.16 Aligned_cols=22 Identities=14% Similarity=0.385 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 024834 135 AALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 135 a~LEaEn~rLRaqL~elrgri~ 156 (262)
..|.+++..|.++|..+.....
T Consensus 54 q~Lq~QI~~LqaQI~qlq~q~~ 75 (106)
T PF14282_consen 54 QLLQAQIQQLQAQIAQLQSQQA 75 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666554443
No 231
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=52.40 E-value=64 Score=31.36 Aligned_cols=18 Identities=6% Similarity=0.248 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 024834 137 LEAEVARLKCLLVDIRGR 154 (262)
Q Consensus 137 LEaEn~rLRaqL~elrgr 154 (262)
++.++..|+.++.+++.+
T Consensus 241 ~~~~i~~l~~~i~~~~~~ 258 (457)
T TIGR01000 241 IQQQIDQLQKSIASYQVQ 258 (457)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444333
No 232
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=52.33 E-value=29 Score=36.46 Aligned_cols=70 Identities=24% Similarity=0.275 Sum_probs=42.3
Q ss_pred chHHHhhccCcccHHHHHHHHHHHH-HHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 83 STEKKTKKRPLGNREAVRKYREKKK-ART--------ASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIR 152 (262)
Q Consensus 83 ~~d~RK~KRmlsNRESARRSR~RKQ-aHl--------eeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elr 152 (262)
.+++|++|=+--|-.|--|-|..|+ +++ +.+++=++.||.....|+++++...+|..|...-+...+.+|
T Consensus 347 lk~k~~qr~lkas~dar~rar~eke~Er~~k~~~~r~~~~~swl~e~r~k~~~ller~~~kk~lk~e~~~r~s~~Sq~r 425 (645)
T KOG0681|consen 347 LKEKKKQRILKASTDARLRARVEKELERLNKLEEEREENLISWLEELREKLEKLLERISQKKRLKQELKDRKSHASQLR 425 (645)
T ss_pred HHHHHHHHHHHhhhhhhccccccchHHHhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHhh
Confidence 3455556555566666555555554 221 225566788888888888888776677777654444444333
No 233
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=51.69 E-value=78 Score=24.96 Aligned_cols=52 Identities=19% Similarity=0.268 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhhhhhc
Q 024834 108 ARTASLEDEVVRLRAVNQQLLKRLQGQ-------AALEAEVARLKCLLVDIRGRIEGEI 159 (262)
Q Consensus 108 aHleeLE~QV~qLraeNqqLl~rLq~~-------a~LEaEn~rLRaqL~elrgri~~~i 159 (262)
+-+.++.++|..|+..-..|...+... .++.+.+..|-.++.++..-|++.+
T Consensus 11 ~dIk~vd~KVdaLq~~V~~l~~~~~~v~~l~~klDa~~~~l~~l~~~V~~I~~iL~~~~ 69 (75)
T PF05531_consen 11 QDIKAVDDKVDALQTQVDDLESNLPDVTELNKKLDAQSAQLTTLNTKVNEIQDILNPDI 69 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 346677778877777777777766542 3344444555556666666665444
No 234
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=51.65 E-value=51 Score=36.95 Aligned_cols=28 Identities=29% Similarity=0.347 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 105 KKKARTASLEDEVVRLRAVNQQLLKRLQ 132 (262)
Q Consensus 105 RKQaHleeLE~QV~qLraeNqqLl~rLq 132 (262)
.+..++++|+..+..|+.+|..|+++|+
T Consensus 527 ~~~~k~eeLe~~l~~lE~ENa~LlkqI~ 554 (1195)
T KOG4643|consen 527 LLSNKLEELEELLGNLEEENAHLLKQIQ 554 (1195)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4567899999999999999999999997
No 235
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=51.64 E-value=1.1e+02 Score=23.43 Aligned_cols=45 Identities=24% Similarity=0.276 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHHHHHH
Q 024834 106 KKARTASLEDEVVRLRAVNQQLLKRL---Q-GQAALEAEVARLKCLLVD 150 (262)
Q Consensus 106 KQaHleeLE~QV~qLraeNqqLl~rL---q-~~a~LEaEn~rLRaqL~e 150 (262)
|-+.|+.|..+-..|......+...| + ....+|.++..|+..+..
T Consensus 10 KDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~ 58 (74)
T PF12329_consen 10 KDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEE 58 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666555555443333332 2 133444444445444444
No 236
>cd07622 BAR_SNX4 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 4. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It is also implicated in the regulation of plasma membrane receptor trafficking and interacts with receptors for EGF, insulin, platelet-derived growth factor and leptin. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and
Probab=51.42 E-value=42 Score=29.88 Aligned_cols=47 Identities=19% Similarity=0.184 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH
Q 024834 98 AVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQG-----QAALEAEVARL 144 (262)
Q Consensus 98 SARRSR~RKQaHleeLE~QV~qLraeNqqLl~rLq~-----~a~LEaEn~rL 144 (262)
++-++|..||...+.+++.++..+++-..-++..+. ...+.+|+.+.
T Consensus 112 ~vlk~r~~~q~~~e~~~~~L~~k~~~l~~~ve~a~~~~e~f~~~~~~E~~rF 163 (201)
T cd07622 112 AVCKKHELLQYDLEKAEDALANKKQQGEEAVKEAKDELNEFVKKALEDVERF 163 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456688888888888888888777663333333221 22445555554
No 237
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=51.03 E-value=52 Score=31.95 Aligned_cols=28 Identities=14% Similarity=0.370 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 96 REAVRKYREKKKARTASLEDEVVRLRAVN 124 (262)
Q Consensus 96 RESARRSR~RKQaHleeLE~QV~qLraeN 124 (262)
+|+.+|-.. +...|++|..|+.++|.++
T Consensus 78 kes~~~l~d-RetEI~eLksQL~RMrEDW 105 (305)
T PF15290_consen 78 KESENRLHD-RETEIDELKSQLARMREDW 105 (305)
T ss_pred HHHHHHHHh-hHHHHHHHHHHHHHHHHHH
Confidence 577777666 4677888888888888876
No 238
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=50.82 E-value=39 Score=33.70 Aligned_cols=20 Identities=30% Similarity=0.220 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 024834 105 KKKARTASLEDEVVRLRAVN 124 (262)
Q Consensus 105 RKQaHleeLE~QV~qLraeN 124 (262)
|=|+..++|..+|.+|+++.
T Consensus 43 ~LKkEN~~Lk~eVerLE~e~ 62 (420)
T PF07407_consen 43 SLKKENNDLKIEVERLENEM 62 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 44556777777777774443
No 239
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=50.80 E-value=65 Score=31.17 Aligned_cols=50 Identities=22% Similarity=0.284 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhhh
Q 024834 107 KARTASLEDEVVRLRAVNQQLLKRLQG-------QAALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 107 QaHleeLE~QV~qLraeNqqLl~rLq~-------~a~LEaEn~rLRaqL~elrgri~ 156 (262)
.+.++.|+.++.+|+.+..+|..+|.. ...++.+++.+..++.++...+.
T Consensus 241 ~~~~~~l~~~~~~~~~~i~~l~~~l~~~~k~~~k~~~~~~q~~~~~k~~~~~~~~~~ 297 (406)
T PF02388_consen 241 KEYLESLQEKLEKLEKEIEKLEEKLEKNPKKKNKLKELEEQLASLEKRIEEAEELIA 297 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666777777777777777666532 33445555555555555554433
No 240
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=50.78 E-value=58 Score=30.19 Aligned_cols=44 Identities=25% Similarity=0.327 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhhh
Q 024834 113 LEDEVVRLRAVNQQLLKRLQG----QAALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 113 LE~QV~qLraeNqqLl~rLq~----~a~LEaEn~rLRaqL~elrgri~ 156 (262)
+..|=.++|.-|.+|.+++.. ...|..|++.||+.-..|=+||.
T Consensus 84 VtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiR 131 (248)
T PF08172_consen 84 VTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIR 131 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444431 23445555555555444444443
No 241
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=50.73 E-value=91 Score=23.06 Aligned_cols=23 Identities=22% Similarity=0.520 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q 024834 134 QAALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 134 ~a~LEaEn~rLRaqL~elrgri~ 156 (262)
...++.++..|+..|.++...+.
T Consensus 60 I~~m~~~~~~l~~~l~~l~~~~~ 82 (87)
T PF08700_consen 60 ISSMENDLSELRNLLSELQQSIQ 82 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455566666666666655543
No 242
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=50.42 E-value=86 Score=26.05 Aligned_cols=30 Identities=17% Similarity=0.150 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 98 AVRKYREKKKARTASLEDEVVRLRAVNQQL 127 (262)
Q Consensus 98 SARRSR~RKQaHleeLE~QV~qLraeNqqL 127 (262)
.+-..|.++...++.++..+...+++-..|
T Consensus 107 ~~l~~R~~~~~~~~~~~~~l~~k~~~~~kl 136 (218)
T cd07596 107 ETLDDRADALLTLQSLKKDLASKKAQLEKL 136 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555554443333
No 243
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=50.38 E-value=72 Score=30.01 Aligned_cols=6 Identities=17% Similarity=0.783 Sum_probs=2.3
Q ss_pred hhhHHH
Q 024834 26 MDSFFE 31 (262)
Q Consensus 26 ~~~~~d 31 (262)
+..||+
T Consensus 16 L~~FL~ 21 (325)
T PF08317_consen 16 LQDFLN 21 (325)
T ss_pred HHHHHH
Confidence 333433
No 244
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=50.36 E-value=57 Score=31.25 Aligned_cols=40 Identities=28% Similarity=0.374 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024834 111 ASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRG 153 (262)
Q Consensus 111 eeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrg 153 (262)
.+|+.++.+|+..+..|...+ ..++.++..|+.++.++..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 50 (389)
T PRK03992 11 SELEEQIRQLELKLRDLEAEN---EKLERELERLKSELEKLKS 50 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhC
Confidence 345556666666665555553 4566777777777776654
No 245
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=50.30 E-value=75 Score=29.26 Aligned_cols=41 Identities=17% Similarity=0.229 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024834 111 ASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGR 154 (262)
Q Consensus 111 eeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrgr 154 (262)
..||..+++++.+..+..+.+ ..+..|+..|+.++.+++.-
T Consensus 63 n~lE~iIkqa~~er~~~~~~i---~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 63 NTLENIIKQAESERNKRQEKI---QRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 345666777777777666665 34445777777776666554
No 246
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=50.27 E-value=94 Score=25.05 Aligned_cols=45 Identities=18% Similarity=0.234 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024834 109 RTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 109 HleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrgri~ 156 (262)
.+++|..+|..|..+-.+|...++. +.++...-+.+......||+
T Consensus 25 kvdqLss~V~~L~~kvdql~~dv~~---a~aaa~aAk~EA~RAN~RiD 69 (85)
T PRK09973 25 KVNQLASNVQTLNAKIARLEQDMKA---LRPQIYAAKSEANRANTRLD 69 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhh
Confidence 6788888888888888777776642 23333333334444445554
No 247
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=50.06 E-value=1.1e+02 Score=25.32 Aligned_cols=55 Identities=15% Similarity=0.200 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHhhh
Q 024834 101 KYREKKKARTASLEDEVVRLRAVNQQLLKRLQGQA--------ALEAEVARLKCLLVDIRGRI 155 (262)
Q Consensus 101 RSR~RKQaHleeLE~QV~qLraeNqqLl~rLq~~a--------~LEaEn~rLRaqL~elrgri 155 (262)
|...++.++...|+.|+++.+.+..+....|..|- .|......|-..|++-..+|
T Consensus 18 r~~~~~~~~q~~l~~eL~~~k~el~~yk~~V~~HF~~ta~Ll~~l~~~Y~~l~~Hla~~a~~L 80 (128)
T PF06295_consen 18 RLTSSNQQKQAKLEQELEQAKQELEQYKQEVNDHFAQTAELLDNLTQDYQKLYQHLAKGAEEL 80 (128)
T ss_pred HHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444556777777777777777777776432 23344455555555544443
No 248
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=49.98 E-value=1.5e+02 Score=24.77 Aligned_cols=46 Identities=15% Similarity=0.130 Sum_probs=30.3
Q ss_pred HhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 87 KTKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQ 132 (262)
Q Consensus 87 RK~KRmlsNRESARRSR~RKQaHleeLE~QV~qLraeNqqLl~rLq 132 (262)
+|+.+..++-+.|.+.|..=++-.++.+.++...+.+-+.++...+
T Consensus 39 ~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~A~~ea~~ii~~A~ 84 (164)
T PRK14471 39 EREDSIKNALASAEEARKEMQNLQADNERLLKEARAERDAILKEAR 84 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666777777777777777777777777776666655543
No 249
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=49.89 E-value=35 Score=25.35 Aligned_cols=33 Identities=33% Similarity=0.388 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024834 120 LRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 120 LraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrgri~ 156 (262)
|+.=|.-|..| ++|..|+..|+.|-.+|+..|.
T Consensus 25 l~rY~~vL~~R----~~l~~e~~~L~~qN~eLr~lLk 57 (60)
T PF14775_consen 25 LKRYNKVLLDR----AALIQEKESLEQQNEELRSLLK 57 (60)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555 4445555555555555554443
No 250
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=49.89 E-value=86 Score=23.52 Aligned_cols=32 Identities=19% Similarity=0.254 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 116 EVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVD 150 (262)
Q Consensus 116 QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~e 150 (262)
+|.+|..+-++|-.++ ..|..++..||..+..
T Consensus 4 kid~Ls~dVq~L~~kv---dqLs~dv~~lr~~v~~ 35 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKV---DQLSSDVNALRADVQA 35 (56)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 3444444444444443 3344444444444443
No 251
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=49.88 E-value=86 Score=25.23 Aligned_cols=21 Identities=19% Similarity=0.227 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 024834 111 ASLEDEVVRLRAVNQQLLKRL 131 (262)
Q Consensus 111 eeLE~QV~qLraeNqqLl~rL 131 (262)
..+..|.++|.+||++|..+.
T Consensus 26 ~ka~~~~~kL~~en~qlk~Ek 46 (87)
T PF10883_consen 26 KKAKKQNAKLQKENEQLKTEK 46 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455667777777766654
No 252
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=49.67 E-value=1.2e+02 Score=25.01 Aligned_cols=34 Identities=26% Similarity=0.332 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 96 REAVRKYREKKKARTASLEDEVVRLRAVNQQLLKR 130 (262)
Q Consensus 96 RESARRSR~RKQaHleeLE~QV~qLraeNqqLl~r 130 (262)
++|..+|-.-=..|.+. ..++..||.+.+.+...
T Consensus 41 ~~Aq~~YE~El~~Ha~~-~~~L~~lr~e~~~~~~~ 74 (132)
T PF07926_consen 41 QEAQQKYERELVKHAED-IKELQQLREELQELQQE 74 (132)
T ss_pred HHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHH
Confidence 34445554444444443 33334444444333333
No 253
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.56 E-value=55 Score=34.77 Aligned_cols=41 Identities=27% Similarity=0.271 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHh
Q 024834 113 LEDEVVRLRAVNQQLLKRL----QGQAALEAEVARLKCLLVDIRG 153 (262)
Q Consensus 113 LE~QV~qLraeNqqLl~rL----q~~a~LEaEn~rLRaqL~elrg 153 (262)
+|.|--+||.+...+.-|- ++|..||.||.-|.-++..||+
T Consensus 147 ~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs~LR~ 191 (772)
T KOG0999|consen 147 VEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQKQVSNLRQ 191 (772)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhh
Confidence 3444444444444444332 2455666666666555555544
No 254
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=49.23 E-value=99 Score=29.99 Aligned_cols=50 Identities=28% Similarity=0.218 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhhh
Q 024834 107 KARTASLEDEVVRLRAVNQQLLKRLQ-------GQAALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 107 QaHleeLE~QV~qLraeNqqLl~rLq-------~~a~LEaEn~rLRaqL~elrgri~ 156 (262)
+..++.|+.+++.|+.+-+++..++. .+..|+.|+...+.....+..|++
T Consensus 323 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~el~~L~Re~~~~~~~Y~~l~~r~e 379 (498)
T TIGR03007 323 EAEIASLEARVAELTARIERLESLLRTIPEVEAELTQLNRDYEVNKSNYEQLLTRRE 379 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555544 455666666666666666666655
No 255
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=49.11 E-value=83 Score=30.72 Aligned_cols=39 Identities=23% Similarity=0.230 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024834 112 SLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRG 153 (262)
Q Consensus 112 eLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrg 153 (262)
+|+.++.+|+.++..|...+ ..++.|+..|+.++..++.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 64 (398)
T PTZ00454 26 ELEKELEFLDIQEEYIKEEQ---KNLKRELIRAKEEVKRIQS 64 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhC
Confidence 34455555555555554443 2345556666666666543
No 256
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=49.07 E-value=88 Score=26.87 Aligned_cols=17 Identities=24% Similarity=0.278 Sum_probs=6.7
Q ss_pred HHHHHHHHHHhhhhhhc
Q 024834 143 RLKCLLVDIRGRIEGEI 159 (262)
Q Consensus 143 rLRaqL~elrgri~~~i 159 (262)
.++..+..+...+..++
T Consensus 181 ~~~~~~~~is~~~k~E~ 197 (236)
T PF09325_consen 181 QAKDEFEEISENIKKEL 197 (236)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333334444443333
No 257
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=48.88 E-value=1.6e+02 Score=28.45 Aligned_cols=69 Identities=12% Similarity=0.196 Sum_probs=42.7
Q ss_pred ccCcccHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhhhhh
Q 024834 90 KRPLGNREAVRKYRE-KKKARTASLEDEVVRLRAVNQQLLKRLQGQA----ALEAEVARLKCLLVDIRGRIEGE 158 (262)
Q Consensus 90 KRmlsNRESARRSR~-RKQaHleeLE~QV~qLraeNqqLl~rLq~~a----~LEaEn~rLRaqL~elrgri~~~ 158 (262)
|.-+.+..++.++.+ -+-+.+-+|.+++..|+.+..+|..+++.+. .+-+.+..|+..+..++..++..
T Consensus 29 R~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~~~ 102 (294)
T COG1340 29 RDELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRNEF 102 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 333444444444322 2446777888888888888888888887543 33444555666666666666644
No 258
>PF15294 Leu_zip: Leucine zipper
Probab=48.55 E-value=59 Score=31.09 Aligned_cols=41 Identities=27% Similarity=0.445 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHh
Q 024834 113 LEDEVVRLRAVNQQLLKRLQG----QAALEAEVARLKCLLVDIRG 153 (262)
Q Consensus 113 LE~QV~qLraeNqqLl~rLq~----~a~LEaEn~rLRaqL~elrg 153 (262)
|..++.+|++||+.|..||.. ....-.|...|.++|.+++.
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778899999999999999863 22333466666677777666
No 259
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=48.49 E-value=1.7e+02 Score=24.89 Aligned_cols=46 Identities=7% Similarity=0.064 Sum_probs=34.2
Q ss_pred HhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 87 KTKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQ 132 (262)
Q Consensus 87 RK~KRmlsNRESARRSR~RKQaHleeLE~QV~qLraeNqqLl~rLq 132 (262)
+|+.+..++=+.|...|..-++.+++.+.++...+.+-++++....
T Consensus 47 ~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~A~ 92 (173)
T PRK13460 47 ERASGVQNDINKASELRLEAEALLKDYEARLNSAKDEANAIVAEAK 92 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666677778888888788888888888888777777776654
No 260
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=48.45 E-value=60 Score=33.15 Aligned_cols=23 Identities=17% Similarity=0.244 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhh
Q 024834 135 AALEAEVARLKCLLVDIRGRIEG 157 (262)
Q Consensus 135 a~LEaEn~rLRaqL~elrgri~~ 157 (262)
..++++...+..++.+++.++..
T Consensus 233 ~~l~~ele~a~~~l~~l~~~~~~ 255 (650)
T TIGR03185 233 AHLRNELEEAQRSLESLEKKFRS 255 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443
No 261
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=48.42 E-value=1.6e+02 Score=27.55 Aligned_cols=51 Identities=18% Similarity=0.147 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHhhhh
Q 024834 106 KKARTASLEDEVVRLRAVNQQLLKRLQGQA-------------ALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 106 KQaHleeLE~QV~qLraeNqqLl~rLq~~a-------------~LEaEn~rLRaqL~elrgri~ 156 (262)
...-++.|+.|+.+++.+-.....+|+.+. .....+..|+.++.+++.++.
T Consensus 168 ~~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~ 231 (362)
T TIGR01010 168 RKDTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLA 231 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667888888888888888877776311 122334555666665555554
No 262
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=48.40 E-value=71 Score=25.01 Aligned_cols=46 Identities=22% Similarity=0.199 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024834 111 ASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 111 eeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrgri~ 156 (262)
++|..+..+|+.+.+.|...++.......|+..++..+..+.....
T Consensus 2 ~~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~ 47 (129)
T cd00890 2 QELAAQLQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETLKKAEE 47 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 3455555556555555555554444555666666666666654433
No 263
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=48.29 E-value=87 Score=24.31 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 108 ARTASLEDEVVRLRAVNQQLLKRLQ 132 (262)
Q Consensus 108 aHleeLE~QV~qLraeNqqLl~rLq 132 (262)
.=|..|++++.+|+.+-+.|..+++
T Consensus 17 ~vl~~LqDE~~hm~~e~~~L~~~~~ 41 (79)
T PF06657_consen 17 EVLKALQDEFGHMKMEHQELQDEYK 41 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578899999999999999955443
No 264
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=48.15 E-value=1e+02 Score=24.99 Aligned_cols=28 Identities=32% Similarity=0.426 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 104 EKKKARTASLEDEVVRLRAVNQQLLKRL 131 (262)
Q Consensus 104 ~RKQaHleeLE~QV~qLraeNqqLl~rL 131 (262)
.|=++.+++|+.++..|..+|.+|..+|
T Consensus 45 ~rwek~v~~L~~e~~~l~~E~e~L~~~l 72 (87)
T PF12709_consen 45 ARWEKKVDELENENKALKRENEQLKKKL 72 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566667777777776666666554
No 265
>PF13093 FTA4: Kinetochore complex Fta4 of Sim4 subunit, or CENP-50
Probab=48.15 E-value=13 Score=33.63 Aligned_cols=66 Identities=21% Similarity=0.332 Sum_probs=43.9
Q ss_pred hccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhh
Q 024834 89 KKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRL-QGQAALEAEVARLKCLLVDIRGR 154 (262)
Q Consensus 89 ~KRmlsNRESARRSR~RKQaHleeLE~QV~qLraeNqqLl~rL-q~~a~LEaEn~rLRaqL~elrgr 154 (262)
.+..|..=...|++.+.|-+++..|+..+.-++.....+...| .....|++|+.+.|.+++.+.+|
T Consensus 147 l~~~L~~l~~~r~~~~~rl~~lr~L~~lLepf~~~~~~IQ~NLvtr~g~l~~El~rmR~LlarV~~r 213 (213)
T PF13093_consen 147 LRERLIELSEQRQYLQQRLEYLRRLRSLLEPFDSPQENIQPNLVTRDGELEAELERMRMLLARVAGR 213 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCccccccccCCCCchHHHHHHHHHHHHHHHccC
Confidence 3445555566677777777777777777766655554222222 12568999999999999888765
No 266
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=48.11 E-value=1.5e+02 Score=26.18 Aligned_cols=28 Identities=25% Similarity=0.132 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 100 RKYREKKKARTASLEDEVVRLRAVNQQL 127 (262)
Q Consensus 100 RRSR~RKQaHleeLE~QV~qLraeNqqL 127 (262)
-.-|.++..+.+.++.++.++++.-..|
T Consensus 107 ~~~R~~~~~~~~~~~~~L~k~~~~~~Kl 134 (216)
T cd07627 107 FAQRQKLWQYWQSAESELSKKKAQLEKL 134 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555444444
No 267
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=48.09 E-value=38 Score=26.75 Aligned_cols=27 Identities=30% Similarity=0.400 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 117 VVRLRAVNQQLLKRLQGQAALEAEVARLKC 146 (262)
Q Consensus 117 V~qLraeNqqLl~rLq~~a~LEaEn~rLRa 146 (262)
+..|..+|.+|.++|+ .||+|+..++.
T Consensus 2 i~ei~eEn~~Lk~eiq---kle~ELq~~~~ 28 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQ---KLEAELQQNKR 28 (76)
T ss_pred hHHHHHHHHHHHHHHH---HHHHHHHHHHh
Confidence 3457777777777763 45666666555
No 268
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=47.96 E-value=98 Score=29.19 Aligned_cols=36 Identities=14% Similarity=0.154 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Q 024834 97 EAVRKYREKKKARTA----SLEDEVVRLRAVNQQLLKRLQ 132 (262)
Q Consensus 97 ESARRSR~RKQaHle----eLE~QV~qLraeNqqLl~rLq 132 (262)
||+-.+-|||.-+++ .++.+++.|+.++..|..++.
T Consensus 170 eSsvAfGmRKALqae~ek~~~~~~~k~le~~k~~Le~~ia 209 (259)
T KOG4001|consen 170 ESSVAFGMRKALQAENEKTRATTEWKVLEDKKKELELKIA 209 (259)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhHHHHHHHHH
Confidence 667777888865554 345555555555555555443
No 269
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=47.95 E-value=59 Score=35.17 Aligned_cols=27 Identities=26% Similarity=0.397 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 106 KKARTASLEDEVVRLRAVNQQLLKRLQ 132 (262)
Q Consensus 106 KQaHleeLE~QV~qLraeNqqLl~rLq 132 (262)
..+.++.|+.|+++|+.+.+.+.++|+
T Consensus 927 ~~~E~~rL~K~l~kl~~ei~~~~~kL~ 953 (995)
T PTZ00419 927 LKKELAKLEKKLAKLQKSLESYLKKIS 953 (995)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 445566677777777777777777775
No 270
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=47.88 E-value=46 Score=33.91 Aligned_cols=41 Identities=24% Similarity=0.278 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024834 110 TASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRG 153 (262)
Q Consensus 110 leeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrg 153 (262)
+.+|..++.+|.+.|..|...|+ ....++..||+++..+.+
T Consensus 3 ~~~~~~~~~~~~~~~~~l~~~l~---~~~~~~~~~~~~~~~~~~ 43 (512)
T TIGR03689 3 LRELQATNSSLGARNAKLAELLK---AARDKLSKLKSQLEQLAQ 43 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcC
Confidence 46788888888888888877764 345677777777766654
No 271
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=47.86 E-value=92 Score=21.91 Aligned_cols=17 Identities=24% Similarity=0.362 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 024834 135 AALEAEVARLKCLLVDI 151 (262)
Q Consensus 135 a~LEaEn~rLRaqL~el 151 (262)
..|+.+|..|+.++..|
T Consensus 35 ~~L~~en~~L~~~i~~L 51 (54)
T PF07716_consen 35 QELEEENEQLRQEIAQL 51 (54)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34555555555555544
No 272
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=47.84 E-value=87 Score=30.78 Aligned_cols=64 Identities=17% Similarity=0.182 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhhhhhccccc
Q 024834 100 RKYREKKKARTASLEDEVVRLRAVNQQLLKRL-------QGQAALEAEVARLKCLLVDIRGRIEGEIGSFP 163 (262)
Q Consensus 100 RRSR~RKQaHleeLE~QV~qLraeNqqLl~rL-------q~~a~LEaEn~rLRaqL~elrgri~~~iG~fp 163 (262)
...|+.-+..+++|..+.+++..+...+.+.- .....|..++..|..++.++..++...+-.+|
T Consensus 34 d~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~iP 104 (425)
T PRK05431 34 DEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELEELLLRIP 104 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 33444445556666666666655554422111 11234445555555555556666654443333
No 273
>COG3159 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.79 E-value=62 Score=30.11 Aligned_cols=17 Identities=29% Similarity=0.427 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 024834 116 EVVRLRAVNQQLLKRLQ 132 (262)
Q Consensus 116 QV~qLraeNqqLl~rLq 132 (262)
|++++|..|.+|..+|+
T Consensus 46 ql~r~R~~~~~Le~~l~ 62 (218)
T COG3159 46 QLARLRNRIRELEEELA 62 (218)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444433
No 274
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.70 E-value=1e+02 Score=29.26 Aligned_cols=21 Identities=19% Similarity=0.365 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 024834 136 ALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 136 ~LEaEn~rLRaqL~elrgri~ 156 (262)
.+++|+..|..++.++..+|.
T Consensus 77 ~~~~eik~l~~eI~~~~~~I~ 97 (265)
T COG3883 77 QSKAEIKKLQKEIAELKENIV 97 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444
No 275
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=47.61 E-value=33 Score=28.70 Aligned_cols=22 Identities=18% Similarity=0.276 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024834 107 KARTASLEDEVVRLRAVNQQLL 128 (262)
Q Consensus 107 QaHleeLE~QV~qLraeNqqLl 128 (262)
++.+++|+.++..|+.+.+.+.
T Consensus 111 ~~~l~~L~~~i~~L~~~~~~~~ 132 (134)
T PF07047_consen 111 QERLEELEERIEELEEQVEKQQ 132 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3556667777776666665543
No 276
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=47.45 E-value=1.1e+02 Score=27.39 Aligned_cols=41 Identities=22% Similarity=0.238 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024834 109 RTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 109 HleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrgri~ 156 (262)
...+|++|+++|..+.++|..- ......||.....|...|+
T Consensus 121 ~~~eL~~eI~~L~~~i~~le~~-------~~~~k~LrnKa~~L~~eL~ 161 (171)
T PF04799_consen 121 TKNELEDEIKQLEKEIQRLEEI-------QSKSKTLRNKANWLESELE 161 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555444 3444445555554444444
No 277
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=47.35 E-value=1.8e+02 Score=26.80 Aligned_cols=37 Identities=22% Similarity=0.365 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 97 EAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQG 133 (262)
Q Consensus 97 ESARRSR~RKQaHleeLE~QV~qLraeNqqLl~rLq~ 133 (262)
|=+||-|+--...+.-+.+.=.-++..|.+|...|.+
T Consensus 20 el~~rLR~~E~ek~~~m~~~g~lm~evNrrlQ~hl~E 56 (195)
T PF10226_consen 20 ELVRRLRRAEAEKMSLMVEHGRLMKEVNRRLQQHLNE 56 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444443
No 278
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=47.27 E-value=1.3e+02 Score=25.58 Aligned_cols=47 Identities=32% Similarity=0.358 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhh
Q 024834 110 TASLEDEVVRLRAVNQQLLKRLQ-GQAALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 110 leeLE~QV~qLraeNqqLl~rLq-~~a~LEaEn~rLRaqL~elrgri~ 156 (262)
++.||.|..+|...=.+...+.. .-..++++++.|+.....+..++.
T Consensus 29 l~~LEae~q~L~~kE~~r~~~~k~~ae~a~~~L~~~~~~~~~i~e~~~ 76 (126)
T PF09403_consen 29 LNQLEAEYQQLEQKEEARYNEEKQEAEAAEAELAELKELYAEIEEKIE 76 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 44555555555443333333332 234666777777666665555444
No 279
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=47.26 E-value=1.3e+02 Score=31.71 Aligned_cols=48 Identities=23% Similarity=0.340 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhhh
Q 024834 109 RTASLEDEVVRLRAVNQQLLKRLQG-------QAALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 109 HleeLE~QV~qLraeNqqLl~rLq~-------~a~LEaEn~rLRaqL~elrgri~ 156 (262)
.+++-|+|...|+++|..|.+.|.. ....-.|...|...|.+|.-.++
T Consensus 302 Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d 356 (581)
T KOG0995|consen 302 EIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELD 356 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666666666666531 22333444455555555443333
No 280
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=47.25 E-value=75 Score=32.74 Aligned_cols=25 Identities=24% Similarity=0.321 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 109 RTASLEDEVVRLRAVNQQLLKRLQG 133 (262)
Q Consensus 109 HleeLE~QV~qLraeNqqLl~rLq~ 133 (262)
.+..+.+|-...|.+|.+|.++|+.
T Consensus 279 k~~qy~~Ee~~~reen~rlQrkL~~ 303 (552)
T KOG2129|consen 279 KLMQYRAEEVDHREENERLQRKLIN 303 (552)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3444555666778888888888763
No 281
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.15 E-value=82 Score=29.96 Aligned_cols=15 Identities=40% Similarity=0.545 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHH
Q 024834 136 ALEAEVARLKCLLVD 150 (262)
Q Consensus 136 ~LEaEn~rLRaqL~e 150 (262)
.++.++..|+..+.+
T Consensus 84 ~l~~eI~~~~~~I~~ 98 (265)
T COG3883 84 KLQKEIAELKENIVE 98 (265)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 282
>PF15369 KIAA1328: Uncharacterised protein KIAA1328
Probab=47.13 E-value=75 Score=31.21 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 024834 108 ARTASLEDEVVRLRAVNQQLLKR 130 (262)
Q Consensus 108 aHleeLE~QV~qLraeNqqLl~r 130 (262)
.+-+.+|.++.+|+.+|.-|++.
T Consensus 33 ~~~~~~e~~~~~l~~~~~~~~~~ 55 (328)
T PF15369_consen 33 AEQESFEKKIRQLEEQNELIIKE 55 (328)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHH
Confidence 34445555555555555555444
No 283
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=47.06 E-value=96 Score=30.16 Aligned_cols=49 Identities=22% Similarity=0.201 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024834 108 ARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 108 aHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrgri~ 156 (262)
--++++|..+.+--..|..|...|.+...|-.+|.|||.+..+||..|.
T Consensus 133 ~sleDfeqrLnqAIErnAfLESELdEke~llesvqRLkdEardlrqela 181 (333)
T KOG1853|consen 133 YSLEDFEQRLNQAIERNAFLESELDEKEVLLESVQRLKDEARDLRQELA 181 (333)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666666666666555555667888888777776554
No 284
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=46.98 E-value=1.1e+02 Score=31.18 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024834 110 TASLEDEVVRLRAVNQQLLKRL 131 (262)
Q Consensus 110 leeLE~QV~qLraeNqqLl~rL 131 (262)
.+.|.+|...|+++-..+..++
T Consensus 29 ~s~~~aq~~~~~a~~~ai~a~~ 50 (459)
T KOG0288|consen 29 QSRLSAQLVILRAESRAIKAKL 50 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443
No 285
>PF07061 Swi5: Swi5; InterPro: IPR010760 This entry represents Swi5 and is involved in meiotic DNA repair synthesis and meiotic joint molecule formation []. It is known to interact with Swi2, Rhp51 and Swi6 [].
Probab=46.87 E-value=1.4e+02 Score=23.47 Aligned_cols=57 Identities=19% Similarity=0.219 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHhhhhhhccc
Q 024834 105 KKKARTASLEDEVVRLRAVNQQLLKRL--------QGQAALEAEVARLKCLLVDIRGRIEGEIGS 161 (262)
Q Consensus 105 RKQaHleeLE~QV~qLraeNqqLl~rL--------q~~a~LEaEn~rLRaqL~elrgri~~~iG~ 161 (262)
..++.+.+|++++.+|..+.+++...+ +.|..+-.|...+|----.|.|+|....|.
T Consensus 4 ~l~~~~~~L~~~~~~l~~~i~~~~~~l~~~~~~~v~~hI~lLheYNeiKD~gQ~Lig~iA~~rgv 68 (83)
T PF07061_consen 4 SLEAEIQELKEQIEQLEKEISELEAELIEDPEKIVKRHIKLLHEYNEIKDIGQGLIGLIADQRGV 68 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC
Confidence 345666777777777777766666653 234455555555565555556666554443
No 286
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=46.87 E-value=6.4 Score=40.57 Aligned_cols=55 Identities=24% Similarity=0.349 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhhh
Q 024834 101 KYREKKKARTASLEDEVVRLRAVNQQLLKRLQ-------GQAALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 101 RSR~RKQaHleeLE~QV~qLraeNqqLl~rLq-------~~a~LEaEn~rLRaqL~elrgri~ 156 (262)
+|| +|-.-+++|..+|+.|+.+|..|+++.. ....+..++..++.++.++..++.
T Consensus 319 ~YK-kKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~qle~~k~qi~eLe~~l~ 380 (713)
T PF05622_consen 319 KYK-KKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELKKARALKSQLEEYKKQIQELEQKLS 380 (713)
T ss_dssp ---------------------------------------------------------------
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 4667788888888888888887766642 233445555555555555554444
No 287
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=46.65 E-value=1.7e+02 Score=24.36 Aligned_cols=46 Identities=11% Similarity=0.120 Sum_probs=36.8
Q ss_pred HhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 87 KTKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQ 132 (262)
Q Consensus 87 RK~KRmlsNRESARRSR~RKQaHleeLE~QV~qLraeNqqLl~rLq 132 (262)
+|+.+..++-+.|.+.|..=++.+++.+.++...+.+-++++....
T Consensus 33 ~R~~~I~~~l~~Ae~~~~eA~~~~~~~e~~L~~A~~ea~~ii~~A~ 78 (159)
T PRK09173 33 ARADRIKNELAEARRLREEAQQLLAEYQRKRKEAEKEAADIVAAAE 78 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777888888888888888888888888888888777776654
No 288
>PF14282 FlxA: FlxA-like protein
Probab=46.57 E-value=70 Score=25.77 Aligned_cols=47 Identities=21% Similarity=0.334 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhh
Q 024834 108 ARTASLEDEVVRLRA-------VNQQLLKRLQG-QAALEAEVARLKCLLVDIRGR 154 (262)
Q Consensus 108 aHleeLE~QV~qLra-------eNqqLl~rLq~-~a~LEaEn~rLRaqL~elrgr 154 (262)
+++..|..++..|.. +.++-...|+. ...|++++++|..+..+-...
T Consensus 26 ~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~~~~~ 80 (106)
T PF14282_consen 26 KQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAEQQQQ 80 (106)
T ss_pred HHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555556555555 11222223332 457778888887777765543
No 289
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=46.53 E-value=71 Score=33.14 Aligned_cols=25 Identities=32% Similarity=0.339 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 107 KARTASLEDEVVRLRAVNQQLLKRL 131 (262)
Q Consensus 107 QaHleeLE~QV~qLraeNqqLl~rL 131 (262)
+..+.+|+.++..|+.++..|..+|
T Consensus 509 ~~~~~~Le~e~~~L~~~~~~Le~~l 533 (722)
T PF05557_consen 509 QKEIEELERENERLRQELEELESEL 533 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888888888888888888666
No 290
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=46.51 E-value=64 Score=26.30 Aligned_cols=25 Identities=28% Similarity=0.306 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhh
Q 024834 133 GQAALEAEVARLKCLLVDIRGRIEG 157 (262)
Q Consensus 133 ~~a~LEaEn~rLRaqL~elrgri~~ 157 (262)
....++..+..|+.++.+...+|+.
T Consensus 45 e~~~~e~k~~~le~~l~e~~~~l~~ 69 (100)
T PF06428_consen 45 ERAALEEKNEQLEKQLKEKEALLES 69 (100)
T ss_dssp HHHHHHHHHHHHHHCTTHHCHCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556777778888888877776664
No 291
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=46.43 E-value=1.4e+02 Score=32.15 Aligned_cols=59 Identities=24% Similarity=0.222 Sum_probs=36.6
Q ss_pred cHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHh
Q 024834 95 NREAVRKYREKK-KARTASLEDEVVRLRAVNQQLLKRLQG----QAALEAEVARLKCLLVDIRG 153 (262)
Q Consensus 95 NRESARRSR~RK-QaHleeLE~QV~qLraeNqqLl~rLq~----~a~LEaEn~rLRaqL~elrg 153 (262)
+||+.-..|... +..+..+..++...+++|..|....+. ...+|.|..+||.++.++.-
T Consensus 27 ~~E~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~ 90 (717)
T PF09730_consen 27 SKEAYLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKF 90 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556555444332 233444444455555667777666653 66889999999998887543
No 292
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=46.40 E-value=85 Score=25.78 Aligned_cols=10 Identities=40% Similarity=0.414 Sum_probs=7.3
Q ss_pred CcccHHHHHH
Q 024834 92 PLGNREAVRK 101 (262)
Q Consensus 92 mlsNRESARR 101 (262)
|.+||.++|.
T Consensus 55 msQNRq~~~d 64 (108)
T PF06210_consen 55 MSQNRQAARD 64 (108)
T ss_pred HHhhHhHHHH
Confidence 5578888875
No 293
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=46.28 E-value=1.5e+02 Score=29.00 Aligned_cols=57 Identities=23% Similarity=0.338 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024834 97 EAVRKYREKKKARTASLE-------DEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 97 ESARRSR~RKQaHleeLE-------~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrgri~ 156 (262)
|++.|-..-.|.++.++| ++|.+.-+.-..|..|| +.|..||..||+||.+...+.+
T Consensus 182 E~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL---~QlqsEN~LLrQQLddA~~K~~ 245 (305)
T PF14915_consen 182 ESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERL---SQLQSENMLLRQQLDDAHNKAD 245 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444443 33444444444555554 6788999999999998766654
No 294
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=46.26 E-value=35 Score=24.32 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 104 EKKKARTASLEDEVVRLRAVNQQL 127 (262)
Q Consensus 104 ~RKQaHleeLE~QV~qLraeNqqL 127 (262)
.|-+.++..++.+++++++++++|
T Consensus 44 ~~~r~~~~~~~k~l~~le~e~~~l 67 (68)
T PF06305_consen 44 LRLRRRIRRLRKELKKLEKELEQL 67 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444455566666666666666554
No 295
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=46.24 E-value=1.3e+02 Score=27.04 Aligned_cols=52 Identities=25% Similarity=0.247 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHhhhh
Q 024834 105 KKKARTASLEDEVVRLRAVNQQLLKRLQG-----------QAALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 105 RKQaHleeLE~QV~qLraeNqqLl~rLq~-----------~a~LEaEn~rLRaqL~elrgri~ 156 (262)
=||.-++.||.+|...+..-++....|+. ....+.++..|+..|...++.+.
T Consensus 64 GKq~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~ 126 (188)
T PF05335_consen 64 GKQQIVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLA 126 (188)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999988888887777752 22344566777776666555443
No 296
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=46.16 E-value=1.5e+02 Score=23.49 Aligned_cols=56 Identities=25% Similarity=0.345 Sum_probs=38.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 95 NREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDI 151 (262)
Q Consensus 95 NRESARRSR~RKQaHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~el 151 (262)
|+.++.||=.=+ .-+..|+..+.+|......|..-++....+|.+|..|-.-+..|
T Consensus 30 N~~~~~kY~~~~-~~~~~l~~~~~~l~~k~~~l~~~l~~Id~Ie~~V~~LE~~v~~L 85 (99)
T PF10046_consen 30 NKATSLKYKKMK-DIAAGLEKNLEDLNQKYEELQPYLQQIDQIEEQVTELEQTVYEL 85 (99)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777774332 34677778888888888777777777777788887776544443
No 297
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=46.01 E-value=1.1e+02 Score=26.20 Aligned_cols=32 Identities=25% Similarity=0.257 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 118 VRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIR 152 (262)
Q Consensus 118 ~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elr 152 (262)
+.+..|.++|.++|. ..+.|+..||.|...+.
T Consensus 157 ~~~~~ei~~lk~el~---~~~~~~~~LkkQ~~~l~ 188 (192)
T PF05529_consen 157 KKLSEEIEKLKKELE---KKEKEIEALKKQSEGLQ 188 (192)
T ss_pred hhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 344444444444442 24566666666655543
No 298
>PHA02562 46 endonuclease subunit; Provisional
Probab=45.83 E-value=98 Score=30.16 Aligned_cols=55 Identities=11% Similarity=0.213 Sum_probs=27.2
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 92 PLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLV 149 (262)
Q Consensus 92 mlsNRESARRSR~RKQaHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~ 149 (262)
++.-.+...+-+..-++.+.+|+.++..++.....+..+ ...|++++..|.....
T Consensus 321 ~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~---~~~l~~ei~~l~~~~~ 375 (562)
T PHA02562 321 AIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDK---AKKVKAAIEELQAEFV 375 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhhh
Confidence 333333444444444555556655555555554444444 3455556555554433
No 299
>PRK06798 fliD flagellar capping protein; Validated
Probab=45.77 E-value=96 Score=30.80 Aligned_cols=44 Identities=20% Similarity=0.292 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------HH-HHHHHHHHHHHHHHHHHHHHh
Q 024834 110 TASLEDEVVRLRAVNQQLLKR-------LQ-GQAALEAEVARLKCLLVDIRG 153 (262)
Q Consensus 110 leeLE~QV~qLraeNqqLl~r-------Lq-~~a~LEaEn~rLRaqL~elrg 153 (262)
++.|+.++.+|..+..++..| |. .+.+||.-+++|.+|..-|..
T Consensus 381 ~~~l~~~i~~l~~~~~~~e~rl~~~e~~l~~qf~ale~~ms~lnsQ~s~l~~ 432 (440)
T PRK06798 381 SKSIDNRVSKLDLKITDIDTQNKQKQDNIVDKYQKLESTLAALDSQLKTIKA 432 (440)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444554444444444444 33 366777777777777655444
No 300
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=45.74 E-value=96 Score=34.78 Aligned_cols=20 Identities=20% Similarity=0.340 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 024834 98 AVRKYREKKKARTASLEDEV 117 (262)
Q Consensus 98 SARRSR~RKQaHleeLE~QV 117 (262)
+.++.+.+..+.+++++.++
T Consensus 369 ~~k~~~d~l~k~I~~~~~~~ 388 (1074)
T KOG0250|consen 369 KLKKEVDRLEKQIADLEKQT 388 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444455444444
No 301
>PF08898 DUF1843: Domain of unknown function (DUF1843); InterPro: IPR014994 This domain is found in functionally uncharacterised proteins. It can be found independently or at the C terminus of the protein.
Probab=45.68 E-value=63 Score=24.12 Aligned_cols=35 Identities=17% Similarity=0.355 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024834 119 RLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRG 153 (262)
Q Consensus 119 qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrg 153 (262)
++++.-.+-...|.++..|.+.+..|+.+++.+.+
T Consensus 18 ~MK~l~~~aeq~L~~~~~i~~al~~Lk~EIaklE~ 52 (53)
T PF08898_consen 18 QMKALAAQAEQQLAEAGDIAAALEKLKAEIAKLEA 52 (53)
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHhc
Confidence 33444444444444445555556666665555443
No 302
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=45.61 E-value=1.3e+02 Score=28.51 Aligned_cols=20 Identities=15% Similarity=0.174 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q 024834 137 LEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 137 LEaEn~rLRaqL~elrgri~ 156 (262)
++.|...|..++.-....|+
T Consensus 111 ~~~e~~sl~~q~~~~~~~L~ 130 (314)
T PF04111_consen 111 FQEERDSLKNQYEYASNQLD 130 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444555555554444444
No 303
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=45.57 E-value=83 Score=32.33 Aligned_cols=14 Identities=36% Similarity=0.558 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHH
Q 024834 137 LEAEVARLKCLLVD 150 (262)
Q Consensus 137 LEaEn~rLRaqL~e 150 (262)
|+.||.+||..++.
T Consensus 309 leeentelRs~~ar 322 (502)
T KOG0982|consen 309 LEEENTELRSLIAR 322 (502)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444443
No 304
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=45.50 E-value=98 Score=30.38 Aligned_cols=24 Identities=17% Similarity=0.119 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 103 REKKKARTASLEDEVVRLRAVNQQ 126 (262)
Q Consensus 103 R~RKQaHleeLE~QV~qLraeNqq 126 (262)
|+.-+..+++|..+-+++..+..+
T Consensus 39 ~r~~~~~~~~l~~erN~~sk~i~~ 62 (418)
T TIGR00414 39 RKKLLSEIEELQAKRNELSKQIGK 62 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555565555555555444
No 305
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.48 E-value=59 Score=35.75 Aligned_cols=60 Identities=17% Similarity=0.132 Sum_probs=44.7
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Q 024834 92 PLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQG----QAALEAEVARLKCLLVDI 151 (262)
Q Consensus 92 mlsNRESARRSR~RKQaHleeLE~QV~qLraeNqqLl~rLq~----~a~LEaEn~rLRaqL~el 151 (262)
..++-..-.--+.+-+..++.|..+++.|+.+|.+|..+++. +..++.++..||.||.-+
T Consensus 655 l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~ 718 (970)
T KOG0946|consen 655 LDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGII 718 (970)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 333444444556677788889999999999999999988874 677888888888887743
No 306
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=45.36 E-value=1e+02 Score=29.20 Aligned_cols=46 Identities=15% Similarity=0.136 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024834 111 ASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 111 eeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrgri~ 156 (262)
.+|+.++++++.+-..+-.....+..|+.|+...+.....+..|++
T Consensus 321 ~~l~~~l~~~~~~~~~l~~~~~~~~~L~r~~~~~~~~y~~ll~r~~ 366 (444)
T TIGR03017 321 AELREALENQKAKVLELNRQRDEMSVLQRDVENAQRAYDAAMQRYT 366 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444566777777777777777766665
No 307
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=45.17 E-value=1.3e+02 Score=22.52 Aligned_cols=38 Identities=18% Similarity=0.301 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024834 109 RTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 109 HleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrgri~ 156 (262)
++++||.++.++...-..+ +.|+..||..+.++...+.
T Consensus 1 Ri~elEn~~~~~~~~i~tv----------k~en~~i~~~ve~i~envk 38 (55)
T PF05377_consen 1 RIDELENELPRIESSINTV----------KKENEEISESVEKIEENVK 38 (55)
T ss_pred CHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHH
Confidence 3688899988888875444 4455555555555444443
No 308
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=45.03 E-value=40 Score=26.05 Aligned_cols=21 Identities=19% Similarity=0.439 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 024834 135 AALEAEVARLKCLLVDIRGRI 155 (262)
Q Consensus 135 a~LEaEn~rLRaqL~elrgri 155 (262)
..||.++.+.|..|..++.++
T Consensus 62 ~~Le~~i~~k~~~L~~~~~~~ 82 (83)
T PF07544_consen 62 EELEEQIRKKREVLQKFKERV 82 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 455566666666666665554
No 309
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=45.02 E-value=1.2e+02 Score=26.90 Aligned_cols=51 Identities=16% Similarity=0.063 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 024834 102 YREKKKARTASLEDEVVRLRAVNQQLLKRLQ-GQAALEAEVARLKCLLVDIR 152 (262)
Q Consensus 102 SR~RKQaHleeLE~QV~qLraeNqqLl~rLq-~~a~LEaEn~rLRaqL~elr 152 (262)
-|.+..+.+++|+.++++|+++...+..--- ....+..++..++..+...+
T Consensus 104 eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~~~~~~~~~~anrwT 155 (188)
T PF03962_consen 104 EREELLEELEELKKELKELKKELEKYSENDPEKIEKLKEEIKIAKEAANRWT 155 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555666666666666655553322100 13345555555555544433
No 310
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=44.93 E-value=1.9e+02 Score=27.25 Aligned_cols=13 Identities=38% Similarity=0.480 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHH
Q 024834 140 EVARLKCLLVDIR 152 (262)
Q Consensus 140 En~rLRaqL~elr 152 (262)
|+.+|++.+..|.
T Consensus 277 Ev~~Lk~~~~~Le 289 (325)
T PF08317_consen 277 EVKRLKAKVDALE 289 (325)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444333
No 311
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=44.87 E-value=1.1e+02 Score=27.11 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q 024834 134 QAALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 134 ~a~LEaEn~rLRaqL~elrgri~ 156 (262)
+.+|..|+.+|+.++..+++.|.
T Consensus 97 N~~L~~dl~klt~~~~~l~~eL~ 119 (182)
T PF15035_consen 97 NEALQEDLQKLTQDWERLRDELE 119 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555554444433
No 312
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=44.77 E-value=85 Score=25.80 Aligned_cols=7 Identities=29% Similarity=0.302 Sum_probs=3.0
Q ss_pred ccHHHHH
Q 024834 94 GNREAVR 100 (262)
Q Consensus 94 sNRESAR 100 (262)
+|++-|+
T Consensus 42 ~n~~lAe 48 (150)
T PF07200_consen 42 ENEELAE 48 (150)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 313
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=44.75 E-value=1.2e+02 Score=29.33 Aligned_cols=33 Identities=21% Similarity=0.245 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 100 RKYREKKKARTASLEDEVVRLRAVNQQLLKRLQ 132 (262)
Q Consensus 100 RRSR~RKQaHleeLE~QV~qLraeNqqLl~rLq 132 (262)
..-|.+..+.+++|+.+.+.|.++|....++|+
T Consensus 100 L~~Rk~L~~~~~el~~~k~~l~~~~~~k~~~L~ 132 (355)
T PF09766_consen 100 LEQRKRLEEQLKELEQRKKKLQQENKKKKKFLD 132 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344666677777777777777777776666664
No 314
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=44.73 E-value=2e+02 Score=24.68 Aligned_cols=46 Identities=9% Similarity=0.035 Sum_probs=29.8
Q ss_pred HhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 87 KTKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQ 132 (262)
Q Consensus 87 RK~KRmlsNRESARRSR~RKQaHleeLE~QV~qLraeNqqLl~rLq 132 (262)
+|+.+..++=+.|.+.|..=++.+.+.+.++...+.+-++++...+
T Consensus 55 ~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~A~~ea~~ii~~A~ 100 (184)
T CHL00019 55 NRKQTILNTIRNSEERREEAIEKLEKARARLRQAELEADEIRVNGY 100 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666666666666677777777777776666666554
No 315
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=44.68 E-value=1.2e+02 Score=27.03 Aligned_cols=15 Identities=20% Similarity=0.268 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q 024834 116 EVVRLRAVNQQLLKR 130 (262)
Q Consensus 116 QV~qLraeNqqLl~r 130 (262)
++..|......++.+
T Consensus 176 ~L~~Le~~W~~~v~k 190 (221)
T PF05700_consen 176 ELRYLEQRWKELVSK 190 (221)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444443333333
No 316
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=44.55 E-value=97 Score=22.73 Aligned_cols=9 Identities=11% Similarity=0.010 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 024834 144 LKCLLVDIR 152 (262)
Q Consensus 144 LRaqL~elr 152 (262)
++.++..|.
T Consensus 88 ~~nq~~~L~ 96 (103)
T PF00804_consen 88 RKNQVQALS 96 (103)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 317
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=44.43 E-value=59 Score=34.59 Aligned_cols=26 Identities=31% Similarity=0.422 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 107 KARTASLEDEVVRLRAVNQQLLKRLQ 132 (262)
Q Consensus 107 QaHleeLE~QV~qLraeNqqLl~rLq 132 (262)
++.++.|+.++++|+.+.+.+.++|+
T Consensus 810 ~~e~~rL~K~l~kl~~ei~~~~~kL~ 835 (874)
T PRK05729 810 EAELARLEKELAKLEKEIERVEKKLS 835 (874)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 45566677777777777777777776
No 318
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=44.19 E-value=58 Score=30.45 Aligned_cols=39 Identities=26% Similarity=0.372 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 111 ASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIR 152 (262)
Q Consensus 111 eeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elr 152 (262)
++|+.++.+|+.+..++..++. .++.|+..||.++..++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 40 (364)
T TIGR01242 2 SELDVRIRKLEDEKRSLEKEKI---RLERELERLRSEIERLR 40 (364)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHh
Confidence 3455556666665555555542 45666777777766543
No 319
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=44.16 E-value=1.6e+02 Score=26.89 Aligned_cols=24 Identities=38% Similarity=0.452 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 108 ARTASLEDEVVRLRAVNQQLLKRL 131 (262)
Q Consensus 108 aHleeLE~QV~qLraeNqqLl~rL 131 (262)
..+..+..+++.|+++..++.+++
T Consensus 135 ~~~~~~~~~i~~l~~~~~~~~~~~ 158 (301)
T PF14362_consen 135 AQIARLDAEIAALQAEIDQLEKEI 158 (301)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555444444
No 320
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=44.03 E-value=1.5e+02 Score=31.85 Aligned_cols=10 Identities=40% Similarity=0.474 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 024834 118 VRLRAVNQQL 127 (262)
Q Consensus 118 ~qLraeNqqL 127 (262)
++|+++.-+|
T Consensus 649 eRl~~erlrl 658 (940)
T KOG4661|consen 649 ERLKAERLRL 658 (940)
T ss_pred HHHHHHHHHH
Confidence 3344433333
No 321
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=44.00 E-value=59 Score=27.78 Aligned_cols=43 Identities=23% Similarity=0.165 Sum_probs=30.1
Q ss_pred hHHHhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 84 TEKKTKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKR 130 (262)
Q Consensus 84 ~d~RK~KRmlsNRESARRSR~RKQaHleeLE~QV~qLraeNqqLl~r 130 (262)
+|.-|.-=|--=||-+ +-=+.++.+|++.+.+|++||.-|+.-
T Consensus 54 MDLVKtHLmfAVREEV----e~Lk~qI~eL~er~~~Le~EN~lLk~~ 96 (123)
T KOG4797|consen 54 MDLVKTHLMFAVREEV----EVLKEQIRELEERNSALERENSLLKTL 96 (123)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5666666666555544 444567889999999999999765443
No 322
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=43.90 E-value=1.2e+02 Score=31.98 Aligned_cols=68 Identities=15% Similarity=0.237 Sum_probs=44.8
Q ss_pred hccCcccHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhhh
Q 024834 89 KKRPLGNREAVRKYREK-KKARTASLEDEVVRLRAVNQQLLKRLQ----GQAALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 89 ~KRmlsNRESARRSR~R-KQaHleeLE~QV~qLraeNqqLl~rLq----~~a~LEaEn~rLRaqL~elrgri~ 156 (262)
.+++..+|+..-|-+.+ =|.-+..+++=|.+++..++.+.+.|. +....|.|+..|+.+..+|...|+
T Consensus 253 e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie 325 (581)
T KOG0995|consen 253 EREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIE 325 (581)
T ss_pred HHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777665554433 455666667777777777776666665 255677777777777777766665
No 323
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=43.88 E-value=1.1e+02 Score=30.64 Aligned_cols=18 Identities=22% Similarity=0.342 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 024834 139 AEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 139 aEn~rLRaqL~elrgri~ 156 (262)
.|+..||++|+.+..|+.
T Consensus 276 ~Ei~~LKqeLa~~EEK~~ 293 (395)
T PF10267_consen 276 NEIYNLKQELASMEEKMA 293 (395)
T ss_pred HHHHHHHHHHHhHHHHHH
Confidence 567788888877666554
No 324
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=43.84 E-value=1.4e+02 Score=27.82 Aligned_cols=48 Identities=25% Similarity=0.278 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHH
Q 024834 98 AVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQG--------QAALEAEVARLK 145 (262)
Q Consensus 98 SARRSR~RKQaHleeLE~QV~qLraeNqqLl~rLq~--------~a~LEaEn~rLR 145 (262)
++-+-|.-+|..++.+++.++.++++..++..++.. ...+.+|+.|-.
T Consensus 153 ~vlk~R~~~Q~~le~k~e~l~k~~~dr~~~~~ev~~~e~kve~a~~~~k~e~~Rf~ 208 (243)
T cd07666 153 GVIKRRDQIQAELDSKVEALANKKADRDLLKEEIEKLEDKVECANNALKADWERWK 208 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667788888888888888888777777666642 334555555543
No 325
>PRK10265 chaperone-modulator protein CbpM; Provisional
Probab=43.84 E-value=35 Score=27.17 Aligned_cols=25 Identities=32% Similarity=0.416 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 110 TASLEDEVVRLRAVNQQLLKRLQGQ 134 (262)
Q Consensus 110 leeLE~QV~qLraeNqqLl~rLq~~ 134 (262)
+=+|-+|+.+||+++..|.++|..+
T Consensus 73 vl~LLd~i~~Lr~el~~L~~~l~~~ 97 (101)
T PRK10265 73 ALTLLDEIAHLKQENRLLRQRLSRF 97 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888888988888888887544
No 326
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=43.68 E-value=1.9e+02 Score=24.36 Aligned_cols=26 Identities=27% Similarity=0.325 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 103 REKKKARTASLEDEVVRLRAVNQQLL 128 (262)
Q Consensus 103 R~RKQaHleeLE~QV~qLraeNqqLl 128 (262)
+....+.++.+..++..|++.+..|.
T Consensus 50 ~~~~~~~~~~~~~~~~~l~~~~~kl~ 75 (136)
T PF04871_consen 50 EQAAEAELEELASEVKELEAEKEKLK 75 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445556666666666665554
No 327
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=43.62 E-value=47 Score=33.17 Aligned_cols=30 Identities=27% Similarity=0.268 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 109 RTASLEDEVVRLRAVNQQLLKRLQGQAALEAEV 141 (262)
Q Consensus 109 HleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn 141 (262)
++..|..|-..|++||..|..++ .+||+|+
T Consensus 33 e~~aLr~EN~~LKkEN~~Lk~eV---erLE~e~ 62 (420)
T PF07407_consen 33 ENFALRMENHSLKKENNDLKIEV---ERLENEM 62 (420)
T ss_pred hhhhHHHHhHHHHHHHHHHHHHH---HHHHHHh
Confidence 45567777788888888887776 3444443
No 328
>TIGR01461 greB transcription elongation factor GreB. The GreA and GreB transcription elongation factors enable to continuation of RNA transcription past template-encoded arresting sites. Among the Proteobacteria, distinct clades of GreA and GreB are found. GreB differs functionally in that it releases larger oligonucleotides. This model describes proteobacterial GreB.
Probab=43.61 E-value=86 Score=26.91 Aligned_cols=48 Identities=10% Similarity=0.076 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHhhhh
Q 024834 109 RTASLEDEVVRLR-AVNQQLLKRLQG------------QAALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 109 HleeLE~QV~qLr-aeNqqLl~rLq~------------~a~LEaEn~rLRaqL~elrgri~ 156 (262)
=++.|++|+.+|+ .+..++.++|+. |.+-..+.+.|...+.+|..+|.
T Consensus 9 G~~~L~~El~~L~~~~r~~~~~~i~~Ar~~GDlsENaeY~aak~~~~~le~rI~~L~~~L~ 69 (156)
T TIGR01461 9 GYEKLKQELNYLWREERPEVTQKVTWAASLGDRSENADYQYGKKRLREIDRRVRFLTKRLE 69 (156)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 3566777777776 356666666642 33344455566666667777666
No 329
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=43.33 E-value=1.1e+02 Score=22.68 Aligned_cols=17 Identities=18% Similarity=0.262 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 024834 135 AALEAEVARLKCLLVDI 151 (262)
Q Consensus 135 a~LEaEn~rLRaqL~el 151 (262)
..+++|+..|+.++..+
T Consensus 41 ~~l~~en~~L~~ei~~l 57 (85)
T TIGR02209 41 DKLQKEWRDLQLEVAEL 57 (85)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45566777777766665
No 330
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=43.25 E-value=62 Score=24.54 Aligned_cols=44 Identities=30% Similarity=0.310 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 024834 108 ARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIEG 157 (262)
Q Consensus 108 aHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrgri~~ 157 (262)
.++..||.-+.=|+.+....++.| -+|+.+|+..-.+|.-+|..
T Consensus 3 ~qv~s~e~~i~FLq~eH~~tL~~L------H~EIe~Lq~~~~dL~~kL~m 46 (60)
T PF14916_consen 3 QQVQSLEKSILFLQQEHAQTLKGL------HAEIERLQKRNKDLTFKLIM 46 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhccccceeeee
Confidence 466777777777888777776664 68999999998888777664
No 331
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=42.99 E-value=84 Score=35.40 Aligned_cols=50 Identities=24% Similarity=0.248 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 97 EAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDI 151 (262)
Q Consensus 97 ESARRSR~RKQaHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~el 151 (262)
.+||+ +.++++|++|+.++..|+.+...+..++ ..+++...+|+..+..+
T Consensus 733 ~~aR~--~~R~~ri~el~~~IaeL~~~i~~l~~~l---~~l~~r~~~L~~e~~~~ 782 (1353)
T TIGR02680 733 AAARE--RARLRRIAELDARLAAVDDELAELAREL---RALGARQRALADELAGA 782 (1353)
T ss_pred HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhC
No 332
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=42.62 E-value=2e+02 Score=23.97 Aligned_cols=45 Identities=9% Similarity=0.106 Sum_probs=30.0
Q ss_pred HhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 87 KTKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRL 131 (262)
Q Consensus 87 RK~KRmlsNRESARRSR~RKQaHleeLE~QV~qLraeNqqLl~rL 131 (262)
+|+.+..+.-+.|...|..=++.+++.+.++.+.+.+-++++...
T Consensus 36 ~R~~~I~~~l~~A~~~~~eA~~~~~e~~~~l~~a~~ea~~ii~~a 80 (159)
T PRK13461 36 SRQSEIDNKIEKADEDQKKARELKLKNERELKNAKEEGKKIVEEY 80 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666677777777777777777777777777666665554
No 333
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=42.46 E-value=1.1e+02 Score=29.69 Aligned_cols=23 Identities=13% Similarity=0.293 Sum_probs=12.6
Q ss_pred ccccCCCCCC---CCCCcccceeccc
Q 024834 42 HTHTCNPPGP---DSSHTHTCFHVHT 64 (262)
Q Consensus 42 hthtcnppgp---~~~hthtc~h~hT 64 (262)
+..+|.+|.. ++...|.|+|.-.
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~le~ 164 (306)
T PF04849_consen 139 PESSESTPLRRNESSLSSQKCIQLEA 164 (306)
T ss_pred cccCCCccccccccccccccchhHHH
Confidence 3445665542 3456677776543
No 334
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=42.20 E-value=2e+02 Score=28.04 Aligned_cols=14 Identities=36% Similarity=1.021 Sum_probs=7.7
Q ss_pred cccccccCCCCCCC
Q 024834 39 ACTHTHTCNPPGPD 52 (262)
Q Consensus 39 ~cththtcnppgp~ 52 (262)
.|.--|-=-||-|.
T Consensus 44 ~C~dNHGikPP~PE 57 (305)
T PF15290_consen 44 SCGDNHGIKPPNPE 57 (305)
T ss_pred ecccCCCCCCCCHH
Confidence 35555555555554
No 335
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=41.95 E-value=2.7e+02 Score=26.34 Aligned_cols=43 Identities=19% Similarity=0.207 Sum_probs=32.1
Q ss_pred hhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 88 TKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKR 130 (262)
Q Consensus 88 K~KRmlsNRESARRSR~RKQaHleeLE~QV~qLraeNqqLl~r 130 (262)
+..+....-+.++..=..+++.+.+|++++..|+.+-+....+
T Consensus 222 ~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e 264 (344)
T PF12777_consen 222 KLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKE 264 (344)
T ss_dssp HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666667777777788888999999888888877665544
No 336
>PF12925 APP_E2: E2 domain of amyloid precursor protein; InterPro: IPR024329 Amyloid-beta precursor protein (APP, or A4) is associated with Alzheimer's disease (AD), because one of its breakdown products, amyloid-beta (A-beta), aggregates to form amyloid or senile plaques [, ]. Mutations in APP or in proteins that process APP have been linked with early-onset, familial AD. Individuals with Down's syndrome carry an extra copy of chromosome 21, which contains the APP gene, and almost invariably develop amyloid plaques and Alzheimer's symptoms. APP is important for the neurogenesis and neuronal regeneration, either through the intact protein, or through its many breakdown products []. APP consists of a large N-terminal extracellular region containing heparin-binding and copper-binding sites, a short hydrophobic transmembrane domain, and a short C-terminal intracellular domain. The N-terminal region is similar in structure to cysteine-rich growth factors and appears to function as a cell surface receptor, contributing to neurite growth, neuronal adhesion, axonogenesis and cell mobility []. APP acts as a kinesin I membrane receptor to mediate the axonal transport of beta-secretase and presenilin 1. The N-terminal domain can regulate neurite outgrowth through its binding to heparin and collagen I and IV, which are components of the extracellular matrix. APP is also coupled to apoptosis-inducing pathways, and is involved in copper homeostasis/oxidative stress through copper ion reduction, where copper-metallated APP induces neuronal death []. The C-terminal intracellular domain appears to be involved in transcription regulation through protein-protein interactions. APP can promote transcription activation through binding to APBB1/Tip60, and may bind to the adaptor protein FE65 to transactivate a wide variety of different promoters. APP can be processed by different sets of enzymes: In the non-amyloidogenic (non-plaque-forming) pathway, APP is cleaved by alpha-secretase to yield a soluble N-terminal sAPP-alpha (neuroprotective) and a membrane-bound CTF-alpha. CTF-alpha is broken-down by presenilin-containing gamma-secretase to yield soluble p3 and membrane-bound AICD (nuclear signalling). In the amyloidogenic pathway (plaque-forming), APP is broken down by beta-secretase to yield soluble sAPP-beta and membrane-bound CTF-beta. CTF-beta is broken down by gamma-secretase to yield soluble amyloid-beta and membrane-bound AICD. Amyloid-beta is required for neuronal function, but can aggregate to form amyloid plaques that seem to disrupt brain cells by clogging points of cell-cell contact. The E2 domain is the largest of the conserved domains in the amyloidogenic glycoproteins. The structure of E2 consists of two coiled-coil sub-structures connected through a continuous helix, and bears an unexpected resemblance to the spectrin family of protein structures. E2 can reversibly dimerise in solution, and the dimerisation occurs along the longest dimension of the molecule in an antiparallel orientation, which enables the N-terminal substructure of one monomer to pack against the C-terminal substructure of a second monomer. The high degree of conservation of residues at the putative dimer interface suggests that the E2 dimer observed in the crystal could be physiologically relevant. Heparin sulphate proteoglycans, the putative ligands for the precursor present in extracellular matrix, bind to E2 at a conserved and positively charged site near the dimer interface [].; PDB: 3K6B_A 3K66_A 1TKN_A 3NYL_A 3NYJ_A 3UMH_A 3UMK_A 3UMI_A 3QMK_B 3PMR_B ....
Probab=41.77 E-value=1.1e+02 Score=27.77 Aligned_cols=44 Identities=25% Similarity=0.290 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHH--------HHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 024834 108 ARTASLEDEVVRLRAV--------NQQLLKRLQG-QAALEAEVARLKCLLVDI 151 (262)
Q Consensus 108 aHleeLE~QV~qLrae--------NqqLl~rLq~-~a~LEaEn~rLRaqL~el 151 (262)
+..+++|++...|... .+.|..+.|. +..||.|.+..|.+|.+.
T Consensus 48 keW~eaE~~~~~l~~~DPk~Ae~~k~~m~~rFQ~~v~aLE~e~~~er~qL~~~ 100 (193)
T PF12925_consen 48 KEWSEAEERYKELPKADPKKAEQFKKEMTQRFQKTVQALEQEAAAERQQLVET 100 (193)
T ss_dssp HHHHHHHHTTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777666543 3455555554 779999999999999874
No 337
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=41.71 E-value=1.7e+02 Score=25.74 Aligned_cols=34 Identities=21% Similarity=0.243 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 96 REAVRKYREKKKARTASLEDEVVRLRAVNQQLLK 129 (262)
Q Consensus 96 RESARRSR~RKQaHleeLE~QV~qLraeNqqLl~ 129 (262)
.|+||.--.+-++.|+++..+|.+.-.+-..|..
T Consensus 22 ~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~ 55 (159)
T PF05384_consen 22 AEQARQEYERLRKELEEVKEEVSEVIEEVDKLEK 55 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999999888776555555444433
No 338
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=41.63 E-value=1.5e+02 Score=33.04 Aligned_cols=47 Identities=23% Similarity=0.241 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 024834 111 ASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIEG 157 (262)
Q Consensus 111 eeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrgri~~ 157 (262)
..||+|..-....|.++...-......|.||..||+||+++...|+.
T Consensus 362 ~RLEEQ~~VVeeA~e~~~e~e~r~e~~E~EvD~lksQLADYQQALD~ 408 (1480)
T COG3096 362 IRLEEQNEVVEEANERQEENEARAEAAELEVDELKSQLADYQQALDV 408 (1480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34555555566666666655444567888999999999998887773
No 339
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=41.54 E-value=1.6e+02 Score=30.84 Aligned_cols=11 Identities=18% Similarity=0.033 Sum_probs=4.2
Q ss_pred HHHHHHHHHhh
Q 024834 144 LKCLLVDIRGR 154 (262)
Q Consensus 144 LRaqL~elrgr 154 (262)
++.++.++..+
T Consensus 474 ~~~~l~~l~~~ 484 (1164)
T TIGR02169 474 LKEEYDRVEKE 484 (1164)
T ss_pred HHHHHHHHHHH
Confidence 33333334333
No 340
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=41.49 E-value=70 Score=26.71 Aligned_cols=32 Identities=13% Similarity=0.243 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 100 RKYREKKKARTASLEDEVVRLRAVNQQLLKRL 131 (262)
Q Consensus 100 RRSR~RKQaHleeLE~QV~qLraeNqqLl~rL 131 (262)
.|++.+.+++-++++++++.|+.+..+|..++
T Consensus 97 ~Rs~~ke~~Ke~~~~~~l~~L~~~i~~L~~~~ 128 (134)
T PF07047_consen 97 WRSARKEAKKEEELQERLEELEERIEELEEQV 128 (134)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555666666666666665555544
No 341
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=41.48 E-value=1.4e+02 Score=29.11 Aligned_cols=50 Identities=24% Similarity=0.271 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024834 107 KARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 107 QaHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrgri~ 156 (262)
+++...|+.++++|+.+...+-+....+..|+.|+...|..+..+-.|..
T Consensus 348 ~~~~~~L~~~~~~l~~~~~~~~~~~~~l~~L~Re~~~~r~~ye~lL~r~q 397 (458)
T COG3206 348 EQQEAALEKELAQLKGRLSKLPKLQVQLRELEREAEAARSLYETLLQRYQ 397 (458)
T ss_pred HHHHHHHHHHHHHHHHHHhhchHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555555677888888888888887766665
No 342
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=41.47 E-value=1.7e+02 Score=32.90 Aligned_cols=27 Identities=22% Similarity=0.283 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 97 EAVRKYREKKKARTASLEDEVVRLRAVN 124 (262)
Q Consensus 97 ESARRSR~RKQaHleeLE~QV~qLraeN 124 (262)
++-..+|+ +|..++.|+.+++.++++-
T Consensus 362 ~~~n~i~~-~k~~~d~l~k~I~~~~~~~ 388 (1074)
T KOG0250|consen 362 EIENSIRK-LKKEVDRLEKQIADLEKQT 388 (1074)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 44444443 3445666777776666654
No 343
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=41.41 E-value=87 Score=30.45 Aligned_cols=19 Identities=26% Similarity=0.408 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 024834 114 EDEVVRLRAVNQQLLKRLQ 132 (262)
Q Consensus 114 E~QV~qLraeNqqLl~rLq 132 (262)
..+...|+.+|+.|.....
T Consensus 59 k~e~s~LkREnq~l~e~c~ 77 (307)
T PF10481_consen 59 KNEYSALKRENQSLMESCE 77 (307)
T ss_pred hhhhhhhhhhhhhHHHHHH
Confidence 3445667777877776654
No 344
>PRK14160 heat shock protein GrpE; Provisional
Probab=41.40 E-value=1e+02 Score=28.17 Aligned_cols=22 Identities=27% Similarity=0.333 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024834 109 RTASLEDEVVRLRAVNQQLLKR 130 (262)
Q Consensus 109 HleeLE~QV~qLraeNqqLl~r 130 (262)
.+++|.+++.+++++..-+.+|
T Consensus 76 e~~elkd~~lR~~AefeN~RKR 97 (211)
T PRK14160 76 ELEALKDRLLRTVAEYDNYRKR 97 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444333333
No 345
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=41.39 E-value=74 Score=32.39 Aligned_cols=30 Identities=23% Similarity=0.207 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 102 YREKKKARTASLEDEVVRLRAVNQQLLKRL 131 (262)
Q Consensus 102 SR~RKQaHleeLE~QV~qLraeNqqLl~rL 131 (262)
.|.||+..+++||.-|.-=+||-.....|.
T Consensus 344 ~~~~kk~~~eeLESIVRiKqAEA~MFQ~kA 373 (446)
T PF07227_consen 344 ERQRKKPQIEELESIVRIKQAEAKMFQLKA 373 (446)
T ss_pred HhhhcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999998876666665555554
No 346
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=41.11 E-value=63 Score=34.54 Aligned_cols=17 Identities=29% Similarity=0.300 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 024834 135 AALEAEVARLKCLLVDI 151 (262)
Q Consensus 135 a~LEaEn~rLRaqL~el 151 (262)
..||.|+.++|+++.+.
T Consensus 360 ~elEEElk~~k~ea~~a 376 (832)
T KOG2077|consen 360 RELEEELKKAKAEAEDA 376 (832)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35566666666666553
No 347
>PF13974 YebO: YebO-like protein
Probab=41.05 E-value=61 Score=25.87 Aligned_cols=32 Identities=34% Similarity=0.452 Sum_probs=22.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 95 NREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQ 132 (262)
Q Consensus 95 NRESARRSR~RKQaHleeLE~QV~qLraeNqqLl~rLq 132 (262)
||.|.|.. ++++=|++-+++.+.+|. |++||.
T Consensus 19 nRaSvRAN-----EQI~LL~~ileqQKrQn~-LL~rL~ 50 (80)
T PF13974_consen 19 NRASVRAN-----EQIELLEEILEQQKRQNA-LLRRLC 50 (80)
T ss_pred HHHHHhHH-----HHHHHHHHHHHHHHHHHH-HHHHHh
Confidence 78887765 457777887888888876 445553
No 348
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=41.05 E-value=33 Score=32.04 Aligned_cols=23 Identities=35% Similarity=0.540 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 024834 108 ARTASLEDEVVRLRAVNQQLLKR 130 (262)
Q Consensus 108 aHleeLE~QV~qLraeNqqLl~r 130 (262)
++|..||+|+.+||++...|+..
T Consensus 122 qKIsALEdELs~LRaQIA~IV~~ 144 (253)
T PF05308_consen 122 QKISALEDELSRLRAQIAKIVAA 144 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 46899999999999999877654
No 349
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=41.02 E-value=96 Score=28.46 Aligned_cols=45 Identities=29% Similarity=0.316 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 104 EKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDI 151 (262)
Q Consensus 104 ~RKQaHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~el 151 (262)
..|...++..+.++.+...+...|..++ ..|++|+..||..+..+
T Consensus 62 ~~K~~ELE~ce~ELqr~~~Ea~lLrekl---~~le~El~~Lr~~l~~~ 106 (202)
T PF06818_consen 62 RTKQLELEVCENELQRKKNEAELLREKL---GQLEAELAELREELACA 106 (202)
T ss_pred HHhhHhHHHhHHHHHHHhCHHHHhhhhh---hhhHHHHHHHHHHHHhh
Confidence 3477788888888888888888888875 57899999999988887
No 350
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=41.01 E-value=2.3e+02 Score=24.25 Aligned_cols=45 Identities=4% Similarity=0.085 Sum_probs=27.9
Q ss_pred hhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 88 TKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQ 132 (262)
Q Consensus 88 K~KRmlsNRESARRSR~RKQaHleeLE~QV~qLraeNqqLl~rLq 132 (262)
|+.+..+.-+.|...+..=+.-+++.+.++...+.+-++++...+
T Consensus 54 R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~Ar~eA~~Ii~~A~ 98 (167)
T PRK08475 54 RINKISKRLEEIQEKLKESKEKKEDALKKLEEAKEKAELIVETAK 98 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555666666666666666666666666666666665554
No 351
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=40.95 E-value=1.7e+02 Score=24.82 Aligned_cols=61 Identities=20% Similarity=0.224 Sum_probs=39.0
Q ss_pred ccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024834 90 KRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGR 154 (262)
Q Consensus 90 KRmlsNRESARRSR~RKQaHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrgr 154 (262)
+|-.+||||-| -|++-+-....+..-|-.+|..++..-|....|-.-+-.|-..+.-+..+
T Consensus 58 ~~q~r~rES~~----Er~K~~~s~~~~q~Lm~rQN~mm~~qqqsidslsksvgklahkvdllehk 118 (121)
T PF10669_consen 58 KRQKRNRESKR----ERQKFIWSMNKQQSLMNRQNNMMKQQQQSIDSLSKSVGKLAHKVDLLEHK 118 (121)
T ss_pred HHHHHhhhhHH----HHHhHHhhhhHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHhh
Confidence 45556777643 45666666777777788888888877766666666666665554444433
No 352
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=40.79 E-value=1.9e+02 Score=27.02 Aligned_cols=34 Identities=15% Similarity=0.150 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 99 VRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQ 132 (262)
Q Consensus 99 ARRSR~RKQaHleeLE~QV~qLraeNqqLl~rLq 132 (262)
.-|-|.-||...++|.+.+..-|+..+.|..++.
T Consensus 151 vlK~RdqkQ~d~E~l~E~l~~rre~~~kLe~~ie 184 (240)
T cd07667 151 VLKKRDQVQAEYEAKLEAVALRKEERPKVPTDVE 184 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567888888888888777655555555555554
No 353
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=40.71 E-value=1.4e+02 Score=26.71 Aligned_cols=16 Identities=25% Similarity=0.322 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 024834 135 AALEAEVARLKCLLVD 150 (262)
Q Consensus 135 a~LEaEn~rLRaqL~e 150 (262)
..|+.|+++|..++..
T Consensus 123 ~eL~~eI~~L~~~i~~ 138 (171)
T PF04799_consen 123 NELEDEIKQLEKEIQR 138 (171)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445555555544443
No 354
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=40.58 E-value=2e+02 Score=25.75 Aligned_cols=51 Identities=25% Similarity=0.253 Sum_probs=36.2
Q ss_pred ccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 94 GNRE--AVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCL 147 (262)
Q Consensus 94 sNRE--SARRSR~RKQaHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaq 147 (262)
-||| +++.+.+||.+.+.+--+.++....+-.+|..+|. .|-.|-++||..
T Consensus 96 vNreLkpl~~~cqKKEkEykealea~nEknkeK~~Lv~~L~---eLv~eSE~~rmK 148 (159)
T PF04949_consen 96 VNRELKPLGQSCQKKEKEYKEALEAFNEKNKEKAQLVTRLM---ELVSESERLRMK 148 (159)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 3555 67777888888877777778888888888888774 355666666643
No 355
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=40.55 E-value=99 Score=29.66 Aligned_cols=44 Identities=30% Similarity=0.348 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024834 110 TASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 110 leeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrgri~ 156 (262)
+..|+.++..|+.++++|..++ ..++.+...++.++..++..++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 46 (389)
T PRK03992 3 LEALEERNSELEEQIRQLELKL---RDLEAENEKLERELERLKSELE 46 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777777777776664 4456666667777777666665
No 356
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=40.48 E-value=2.4e+02 Score=26.94 Aligned_cols=57 Identities=18% Similarity=0.134 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHh
Q 024834 97 EAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALE--------AEVARLKCLLVDIRG 153 (262)
Q Consensus 97 ESARRSR~RKQaHleeLE~QV~qLraeNqqLl~rLq~~a~LE--------aEn~rLRaqL~elrg 153 (262)
+..++.-.-++..+++|+..++.+.++-+++...|+....+- .|+.+|++++..|..
T Consensus 221 ~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~Le~ 285 (312)
T smart00787 221 MIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQS 285 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
No 357
>PRK10698 phage shock protein PspA; Provisional
Probab=40.47 E-value=2.3e+02 Score=25.57 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 024834 109 RTASLEDEVVRLRAVNQQLLKRL 131 (262)
Q Consensus 109 HleeLE~QV~qLraeNqqLl~rL 131 (262)
.++.|+.++...+..-.+|...+
T Consensus 100 ~~~~l~~~~~~~~~~~~~L~~~l 122 (222)
T PRK10698 100 LIATLEHEVTLVDETLARMKKEI 122 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555444444444444443
No 358
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=40.43 E-value=1.8e+02 Score=30.56 Aligned_cols=12 Identities=17% Similarity=0.299 Sum_probs=4.8
Q ss_pred HHHHHHHHhhhh
Q 024834 145 KCLLVDIRGRIE 156 (262)
Q Consensus 145 RaqL~elrgri~ 156 (262)
+.++..++..+.
T Consensus 468 ~~~l~~~~~~l~ 479 (1164)
T TIGR02169 468 EQELYDLKEEYD 479 (1164)
T ss_pred HHHHHHHHHHHH
Confidence 333334444444
No 359
>PHA03011 hypothetical protein; Provisional
Probab=40.42 E-value=1.3e+02 Score=25.54 Aligned_cols=14 Identities=36% Similarity=0.422 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHH
Q 024834 136 ALEAEVARLKCLLV 149 (262)
Q Consensus 136 ~LEaEn~rLRaqL~ 149 (262)
.|.+|..+||.+++
T Consensus 103 ~LraeIDkLK~nia 116 (120)
T PHA03011 103 FLRAEIDKLKENIA 116 (120)
T ss_pred HHHHHHHHHHHHHh
Confidence 55566666666554
No 360
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=40.31 E-value=28 Score=35.59 Aligned_cols=28 Identities=18% Similarity=0.311 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 105 KKKARTASLEDEVVRLRAVNQQLLKRLQ 132 (262)
Q Consensus 105 RKQaHleeLE~QV~qLraeNqqLl~rLq 132 (262)
-++++|++|+.||++|+++...|.+|+.
T Consensus 28 ~~~qkie~L~kql~~Lk~q~~~l~~~v~ 55 (489)
T PF11853_consen 28 DLLQKIEALKKQLEELKAQQDDLNDRVD 55 (489)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccccccc
Confidence 3455888888888888888887777764
No 361
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=40.22 E-value=82 Score=30.01 Aligned_cols=48 Identities=27% Similarity=0.384 Sum_probs=35.3
Q ss_pred HHHhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 85 EKKTKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQ 132 (262)
Q Consensus 85 d~RK~KRmlsNRESARRSR~RKQaHleeLE~QV~qLraeNqqLl~rLq 132 (262)
..|.+|+.+.+.-+.-+++.-.-..|..||.|+.++++++.-....|.
T Consensus 142 p~R~~r~~l~d~I~kLk~k~P~s~kl~~LeqELvraEae~lvaEAqL~ 189 (271)
T PF13805_consen 142 PSRDRRRKLQDEIAKLKYKDPQSPKLVVLEQELVRAEAENLVAEAQLS 189 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TTTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 456778888888876666555555889999999888888877666665
No 362
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=40.13 E-value=2.4e+02 Score=27.57 Aligned_cols=60 Identities=23% Similarity=0.180 Sum_probs=38.6
Q ss_pred cCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024834 91 RPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRG 153 (262)
Q Consensus 91 RmlsNRESARRSR~RKQaHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrg 153 (262)
+.+.-++.--|.|+|=...+.-=|.+|.-|..+.....+.| ..|+.|+.++|.+|...+.
T Consensus 71 ~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqi---e~Leqelkr~KsELErsQ~ 130 (307)
T PF10481_consen 71 SLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQI---EKLEQELKRCKSELERSQQ 130 (307)
T ss_pred hHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 33444555556666655556666666766666666666654 5678888888888775443
No 363
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=40.11 E-value=54 Score=22.30 Aligned_cols=21 Identities=33% Similarity=0.400 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 024834 112 SLEDEVVRLRAVNQQLLKRLQ 132 (262)
Q Consensus 112 eLE~QV~qLraeNqqLl~rLq 132 (262)
.|..++++||...+||..+|.
T Consensus 5 kL~sekeqLrrr~eqLK~kLe 25 (32)
T PF02344_consen 5 KLISEKEQLRRRREQLKHKLE 25 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 577888899999999888874
No 364
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=40.01 E-value=1.7e+02 Score=31.17 Aligned_cols=44 Identities=16% Similarity=0.211 Sum_probs=25.5
Q ss_pred hhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 88 TKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRL 131 (262)
Q Consensus 88 K~KRmlsNRESARRSR~RKQaHleeLE~QV~qLraeNqqLl~rL 131 (262)
+.-+++..=++.|+.=+.+++.++.+..++.+++++-++..+++
T Consensus 517 ~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l 560 (782)
T PRK00409 517 KLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKL 560 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666666666666666666666666655555555544444
No 365
>COG5293 Predicted ATPase [General function prediction only]
Probab=39.95 E-value=1.4e+02 Score=31.10 Aligned_cols=67 Identities=18% Similarity=0.149 Sum_probs=34.9
Q ss_pred ccCcccHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHhhhh
Q 024834 90 KRPLGNREAVRKYREKK-KARTASLEDEVVRLRAVNQQLLKRLQ------GQAALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 90 KRmlsNRESARRSR~RK-QaHleeLE~QV~qLraeNqqLl~rLq------~~a~LEaEn~rLRaqL~elrgri~ 156 (262)
|+|..||-+--.+--.| ++-|.+++.++..|-.+...++.-|. .+..|-.|..+++.+|++++-||+
T Consensus 330 r~~~e~R~~yl~~ei~~i~~dLk~~n~~~~~l~~~rae~l~~Lk~~g~~e~y~~l~ee~~~~~~elae~~~rie 403 (591)
T COG5293 330 RAITEERHDYLQEEIAEIEGDLKEVNAELDDLGKRRAEGLAFLKNRGVFEKYQTLCEEIIALRGELAELEYRIE 403 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhhHHHHHHhhh
Confidence 56666665444333222 33344444444444444444444443 255566677777777777666554
No 366
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=39.95 E-value=1.8e+02 Score=30.90 Aligned_cols=18 Identities=22% Similarity=0.516 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 024834 139 AEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 139 aEn~rLRaqL~elrgri~ 156 (262)
.++..|+.++.+|.|-|.
T Consensus 300 ~~r~kL~N~i~eLkGnIR 317 (670)
T KOG0239|consen 300 EERRKLHNEILELKGNIR 317 (670)
T ss_pred HHHHHHHHHHHHhhcCce
Confidence 556677888888877665
No 367
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=39.92 E-value=3.4e+02 Score=28.04 Aligned_cols=9 Identities=22% Similarity=0.364 Sum_probs=4.7
Q ss_pred CccCCccCC
Q 024834 235 VRELPGCGD 243 (262)
Q Consensus 235 ~~~~~~~~~ 243 (262)
-.+|-+|-+
T Consensus 258 ~~dl~gC~v 266 (475)
T PRK13729 258 TYDATGCFV 266 (475)
T ss_pred ccccCCcEE
Confidence 345666643
No 368
>PRK11239 hypothetical protein; Provisional
Probab=39.83 E-value=48 Score=30.77 Aligned_cols=14 Identities=14% Similarity=0.323 Sum_probs=9.0
Q ss_pred CChhhHHHHHhccc
Q 024834 24 CSMDSFFEDILKDT 37 (262)
Q Consensus 24 ~s~~~~~d~~l~~t 37 (262)
-+++.+++++....
T Consensus 131 ~~Ve~~L~~L~~r~ 144 (215)
T PRK11239 131 AEVESTLEQLANRE 144 (215)
T ss_pred HHHHHHHHHHHhcc
Confidence 35677788776543
No 369
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=39.82 E-value=53 Score=33.04 Aligned_cols=41 Identities=27% Similarity=0.394 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 104 EKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCL 147 (262)
Q Consensus 104 ~RKQaHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaq 147 (262)
+++++++-|++.+.++|...|++|..+++ .||.+..+++.+
T Consensus 286 qq~~q~~~E~~~rqk~le~~n~~L~~rie---eLk~~~~~~~~~ 326 (411)
T KOG1318|consen 286 QQTLQRARELENRQKKLESTNQELALRIE---ELKSEAGRHGLQ 326 (411)
T ss_pred HHHHHHHHHHHhhhhHHHhHHHHHHHHHH---HHHHHHHHhcCc
Confidence 34556688999999999999999999974 455555554433
No 370
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=39.70 E-value=2.3e+02 Score=23.77 Aligned_cols=46 Identities=17% Similarity=0.228 Sum_probs=31.2
Q ss_pred HhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 87 KTKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQ 132 (262)
Q Consensus 87 RK~KRmlsNRESARRSR~RKQaHleeLE~QV~qLraeNqqLl~rLq 132 (262)
+|+.+..++-+.|...+..=++-+++.+.++...+.+-++++....
T Consensus 39 ~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~l~~A~~ea~~ii~~A~ 84 (164)
T PRK14473 39 ERTRRIEESLRDAEKVREQLANAKRDYEAELAKARQEAAKIVAQAQ 84 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666777777777777777777777777777666666543
No 371
>PF01763 Herpes_UL6: Herpesvirus UL6 like; InterPro: IPR002660 This family consists of various proteins from the Herpesviridae that are similar to Human herpesvirus 1 (HHV-1) UL6 virion protein. UL6 is essential for cleavage and packaging of the viral genome [].; GO: 0006323 DNA packaging
Probab=39.63 E-value=70 Score=33.31 Aligned_cols=37 Identities=30% Similarity=0.394 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 108 ARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCL 147 (262)
Q Consensus 108 aHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaq 147 (262)
.++.+|-+++..|+++|+.+++||+ .+|.|+.+++.+
T Consensus 370 ~qIn~qf~tIe~Lk~~n~~~~~kl~---~~e~~L~r~~~~ 406 (557)
T PF01763_consen 370 GQINNQFDTIEDLKEENQDLEKKLR---ELESELSRYREE 406 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHh
Confidence 4677788888899999999999974 467777777766
No 372
>PF08286 Spc24: Spc24 subunit of Ndc80; InterPro: IPR013252 Spc24 is a component of the evolutionarily conserved kinetochore-associated Ndc80 complex and is involved in chromosome segregation [].; PDB: 2VE7_D 2FV4_B 2FTX_B.
Probab=39.55 E-value=10 Score=30.70 Aligned_cols=26 Identities=23% Similarity=0.330 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 107 KARTASLEDEVVRLRAVNQQLLKRLQ 132 (262)
Q Consensus 107 QaHleeLE~QV~qLraeNqqLl~rLq 132 (262)
.+.+.+||.++..|+++-..|..++.
T Consensus 12 aK~~~~LE~~l~~l~~el~~L~~~l~ 37 (118)
T PF08286_consen 12 AKELSDLESELESLQSELEELKEELE 37 (118)
T ss_dssp --------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666555555543
No 373
>PLN02943 aminoacyl-tRNA ligase
Probab=39.53 E-value=88 Score=34.01 Aligned_cols=26 Identities=19% Similarity=0.321 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 107 KARTASLEDEVVRLRAVNQQLLKRLQ 132 (262)
Q Consensus 107 QaHleeLE~QV~qLraeNqqLl~rLq 132 (262)
++.++.|+.|+++|+.+.+.+.++|+
T Consensus 888 ~~E~~rL~K~l~klekei~~~~~kLs 913 (958)
T PLN02943 888 SAEVERLSKRLSKMQTEYDALAARLS 913 (958)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 45566677777777777777777776
No 374
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=39.42 E-value=2.6e+02 Score=24.34 Aligned_cols=9 Identities=22% Similarity=0.298 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 024834 98 AVRKYREKK 106 (262)
Q Consensus 98 SARRSR~RK 106 (262)
-||..=.||
T Consensus 85 LAr~al~~k 93 (221)
T PF04012_consen 85 LAREALQRK 93 (221)
T ss_pred HHHHHHHHH
Confidence 344333333
No 375
>PF14303 NAM-associated: No apical meristem-associated C-terminal domain
Probab=39.30 E-value=1.7e+02 Score=23.78 Aligned_cols=13 Identities=46% Similarity=0.859 Sum_probs=7.9
Q ss_pred hccCcccHHHHHH
Q 024834 89 KKRPLGNREAVRK 101 (262)
Q Consensus 89 ~KRmlsNRESARR 101 (262)
.+|+++-..|=++
T Consensus 59 ~~RP~G~K~AK~k 71 (154)
T PF14303_consen 59 SKRPIGRKKAKEK 71 (154)
T ss_pred cCCCccHHHHHHH
Confidence 4677776655443
No 376
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=39.23 E-value=78 Score=27.14 Aligned_cols=26 Identities=19% Similarity=0.229 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhc
Q 024834 134 QAALEAEVARLKCLLVDIRGRIEGEI 159 (262)
Q Consensus 134 ~a~LEaEn~rLRaqL~elrgri~~~i 159 (262)
++.++.+...|..++.++...+....
T Consensus 68 waKl~Rk~~kl~~el~~~~~~~~~~~ 93 (161)
T PF04420_consen 68 WAKLNRKLDKLEEELEKLNKSLSSEK 93 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555554433
No 377
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=39.21 E-value=53 Score=26.45 Aligned_cols=23 Identities=13% Similarity=0.084 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 024834 108 ARTASLEDEVVRLRAVNQQLLKR 130 (262)
Q Consensus 108 aHleeLE~QV~qLraeNqqLl~r 130 (262)
+.+.+|+.++.+|+.||.-|.+.
T Consensus 78 ~ei~~L~~el~~L~~E~diLKKa 100 (121)
T PRK09413 78 KQIKELQRLLGKKTMENELLKEA 100 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666544433
No 378
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=39.03 E-value=1.2e+02 Score=29.60 Aligned_cols=16 Identities=31% Similarity=0.264 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 024834 136 ALEAEVARLKCLLVDI 151 (262)
Q Consensus 136 ~LEaEn~rLRaqL~el 151 (262)
.|..|+..||...+.+
T Consensus 52 ~L~~e~~~lr~~sv~~ 67 (310)
T PF09755_consen 52 HLQEENRALREASVRI 67 (310)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444433
No 379
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]
Probab=39.03 E-value=48 Score=35.93 Aligned_cols=52 Identities=15% Similarity=0.293 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 96 REAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCL 147 (262)
Q Consensus 96 RESARRSR~RKQaHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaq 147 (262)
||+...+=.|+..++..+.+|++.|--.|..|-+|+...+.|+.-|..||..
T Consensus 21 Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~ 72 (803)
T KOG3561|consen 21 RENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLI 72 (803)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHH
Confidence 6666666666666677777777777666666666665555555555555543
No 380
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=39.02 E-value=2.7e+02 Score=25.02 Aligned_cols=14 Identities=21% Similarity=0.268 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHH
Q 024834 137 LEAEVARLKCLLVD 150 (262)
Q Consensus 137 LEaEn~rLRaqL~e 150 (262)
++.++..|+.++..
T Consensus 158 ~~~~l~~l~~ei~~ 171 (176)
T PF12999_consen 158 LEKKLEELEKEIQA 171 (176)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444433
No 381
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=38.94 E-value=1.4e+02 Score=29.25 Aligned_cols=36 Identities=17% Similarity=0.230 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 108 ARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKC 146 (262)
Q Consensus 108 aHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRa 146 (262)
..++.|+.+...|+.+..++.+++ ..++.|+.+|+.
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 64 (398)
T PTZ00454 29 KELEFLDIQEEYIKEEQKNLKREL---IRAKEEVKRIQS 64 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhC
Confidence 456667777777777776666654 346667777664
No 382
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=38.91 E-value=2.1e+02 Score=24.24 Aligned_cols=20 Identities=25% Similarity=0.336 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 024834 112 SLEDEVVRLRAVNQQLLKRL 131 (262)
Q Consensus 112 eLE~QV~qLraeNqqLl~rL 131 (262)
.+++++..++.....+.+++
T Consensus 127 ~~~~~l~~l~~~~~~~~~e~ 146 (191)
T PF04156_consen 127 SVEERLDSLDESIKELEKEI 146 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444443
No 383
>PRK03918 chromosome segregation protein; Provisional
Probab=38.79 E-value=2.3e+02 Score=29.42 Aligned_cols=6 Identities=33% Similarity=0.672 Sum_probs=2.9
Q ss_pred CcccCC
Q 024834 4 GEVDFS 9 (262)
Q Consensus 4 ge~~~s 9 (262)
..|+|+
T Consensus 17 ~~i~f~ 22 (880)
T PRK03918 17 SVVEFD 22 (880)
T ss_pred ceEecC
Confidence 345554
No 384
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=38.79 E-value=95 Score=22.62 Aligned_cols=19 Identities=26% Similarity=0.298 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 024834 112 SLEDEVVRLRAVNQQLLKR 130 (262)
Q Consensus 112 eLE~QV~qLraeNqqLl~r 130 (262)
.|..||.-|+.+-+.|...
T Consensus 3 aLrqQv~aL~~qv~~Lq~~ 21 (46)
T PF09006_consen 3 ALRQQVEALQGQVQRLQAA 21 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444433333
No 385
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=38.64 E-value=1.7e+02 Score=31.17 Aligned_cols=41 Identities=15% Similarity=0.198 Sum_probs=20.5
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 92 PLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQ 132 (262)
Q Consensus 92 mlsNRESARRSR~RKQaHleeLE~QV~qLraeNqqLl~rLq 132 (262)
...-++.+.+-++.=++..++|+.+.++|+.+-+.+++++.
T Consensus 532 ~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~~~ 572 (782)
T PRK00409 532 LEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAE 572 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444445555555555555555555443
No 386
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=38.58 E-value=1.1e+02 Score=23.01 Aligned_cols=21 Identities=24% Similarity=0.396 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 024834 136 ALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 136 ~LEaEn~rLRaqL~elrgri~ 156 (262)
.++.++..|+.++..+..++.
T Consensus 73 ~~~~~i~~l~~~~~~l~~~l~ 93 (106)
T PF01920_consen 73 KLEKEIKKLEKQLKYLEKKLK 93 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555554444443
No 387
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=38.55 E-value=1.8e+02 Score=32.46 Aligned_cols=22 Identities=36% Similarity=0.493 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHH
Q 024834 96 REAVRKYREKKKA--RTASLEDEV 117 (262)
Q Consensus 96 RESARRSR~RKQa--HleeLE~QV 117 (262)
|++||.++++++. ++..|+.|+
T Consensus 729 ~e~A~~~qq~~q~~srl~~~~aql 752 (984)
T COG4717 729 REAAREEQQLTQRESRLESLEAQL 752 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888988888764 344454444
No 388
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=38.38 E-value=1.5e+02 Score=24.75 Aligned_cols=46 Identities=26% Similarity=0.401 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024834 108 ARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRI 155 (262)
Q Consensus 108 aHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrgri 155 (262)
+.+.+|..++.++.++-+.=..+|+ ...+++.+.|...+..+.+.|
T Consensus 10 ~ki~~l~~~~~~i~~~~~~~I~~i~--~~~~~~~~~l~~~i~~l~~~l 55 (149)
T PF07352_consen 10 RKIAELQREIARIEAEANDEIARIK--EWYEAEIAPLQNRIEYLEGLL 55 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 3466666666666666554444443 223344444444444443333
No 389
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=38.37 E-value=95 Score=33.38 Aligned_cols=62 Identities=29% Similarity=0.265 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHH--HHHHHHHHHHHHHHhhhhhhcccc
Q 024834 101 KYREKKKARTASLEDEVVRLRAVNQQLLK--------RLQGQAALE--AEVARLKCLLVDIRGRIEGEIGSF 162 (262)
Q Consensus 101 RSR~RKQaHleeLE~QV~qLraeNqqLl~--------rLq~~a~LE--aEn~rLRaqL~elrgri~~~iG~f 162 (262)
++|+.|+..++.|+++...|+.-++.|.. .+.-+..+- .|++.||.++..+..|....-.+|
T Consensus 552 ~~~~~~k~~~e~LqaE~~~lk~~l~~le~~~~~~~d~~i~~~s~~~~~~ev~qlk~ev~s~ekr~~rlk~vF 623 (716)
T KOG4593|consen 552 KARQIKKNRLEELQAELERLKERLTALEGDKMQFRDGEIAVHSLLAFSKEVAQLKKEVESAEKRNQRLKEVF 623 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhhHHhhhhcchHHHHHHHHHHHHHHHHHHHHHHHH
No 390
>PRK06664 fliD flagellar hook-associated protein FliD; Validated
Probab=38.31 E-value=1.4e+02 Score=31.48 Aligned_cols=47 Identities=9% Similarity=0.070 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhh
Q 024834 110 TASLEDEVVRLRAVNQQLLKRLQ-GQAALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 110 leeLE~QV~qLraeNqqLl~rLq-~~a~LEaEn~rLRaqL~elrgri~ 156 (262)
+..|+.+++.|....+++.+||. .+.+||.-++.|.++..-|...+.
T Consensus 609 i~~l~~~i~~~e~rl~~~e~rl~~QFtaME~~msqmnsqss~L~~~~~ 656 (661)
T PRK06664 609 IADNNKKIEEYEKKLESKERKLKGKYLTMDQTVKKMKEQSNYLKNFNK 656 (661)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444455543 367777777777777766666554
No 391
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=38.26 E-value=2.5e+02 Score=23.86 Aligned_cols=23 Identities=17% Similarity=0.312 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q 024834 134 QAALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 134 ~a~LEaEn~rLRaqL~elrgri~ 156 (262)
|....+++..||..+..++.++.
T Consensus 147 y~~~~~~~~~l~~~i~~l~rk~~ 169 (177)
T PF13870_consen 147 YDKTKEEVEELRKEIKELERKVE 169 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555443
No 392
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=38.19 E-value=1.4e+02 Score=31.25 Aligned_cols=52 Identities=23% Similarity=0.323 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhh
Q 024834 104 EKKKARTASLEDEVVRLRAVNQQLLKRLQG-------QAALEAEVARLKCLLVDIRGRI 155 (262)
Q Consensus 104 ~RKQaHleeLE~QV~qLraeNqqLl~rLq~-------~a~LEaEn~rLRaqL~elrgri 155 (262)
..++.+|.+||.+|.+++.......+-|.. ....-+.|..||.+|.++..+.
T Consensus 118 ~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~F 176 (617)
T PF15070_consen 118 QEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELKEQLAELQDAF 176 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHH
No 393
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.06 E-value=2.3e+02 Score=26.90 Aligned_cols=25 Identities=28% Similarity=0.314 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 109 RTASLEDEVVRLRAVNQQLLKRLQG 133 (262)
Q Consensus 109 HleeLE~QV~qLraeNqqLl~rLq~ 133 (262)
.+..|++++.+|.++...|.+++..
T Consensus 58 e~~s~Q~~~~~L~~ev~~~~~~~~s 82 (247)
T COG3879 58 ELRSLQKKVNTLAAEVEDLENKLDS 82 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555566666666666555543
No 394
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=38.03 E-value=1.8e+02 Score=28.44 Aligned_cols=45 Identities=18% Similarity=0.184 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 96 REAVRKYREKKKARTASLEDEV--------VRLRAVNQQLLKRLQGQAALEAEVAR 143 (262)
Q Consensus 96 RESARRSR~RKQaHleeLE~QV--------~qLraeNqqLl~rLq~~a~LEaEn~r 143 (262)
|..+.|-|.+=-.-++-+.+.. -.|++||++|.+++. .|++++.+
T Consensus 30 ~~~~e~~r~~~~d~~ap~~~~~~~p~~~~y~~L~~EN~~Lk~Ena---~L~~~l~~ 82 (337)
T PRK14872 30 RPVYEKIQDTFVSLCSKFFPKFRQGPSSHALVLETENFLLKERIA---LLEERLKS 82 (337)
T ss_pred cHHHHHHHHhhHHHhchhhHHHhCcchHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 3445555555544444444433 478888888887753 44444444
No 395
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=38.02 E-value=2.5e+02 Score=27.48 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhh
Q 024834 134 QAALEAEVARLKCLLVDIRGRIEGE 158 (262)
Q Consensus 134 ~a~LEaEn~rLRaqL~elrgri~~~ 158 (262)
...+.+++..|+.++.+|...+...
T Consensus 384 ~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 384 KKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5567777777777777777766654
No 396
>PHA00728 hypothetical protein
Probab=37.98 E-value=43 Score=29.23 Aligned_cols=19 Identities=37% Similarity=0.510 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 024834 115 DEVVRLRAVNQQLLKRLQG 133 (262)
Q Consensus 115 ~QV~qLraeNqqLl~rLq~ 133 (262)
.+|.+|+.+|.+|.++|+.
T Consensus 5 teveql~keneelkkkla~ 23 (151)
T PHA00728 5 TEVEQLKKENEELKKKLAE 23 (151)
T ss_pred hHHHHHHHhHHHHHHHHHH
Confidence 4788999999999999854
No 397
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=37.93 E-value=2.9e+02 Score=25.44 Aligned_cols=19 Identities=21% Similarity=0.123 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHhhhhh
Q 024834 139 AEVARLKCLLVDIRGRIEG 157 (262)
Q Consensus 139 aEn~rLRaqL~elrgri~~ 157 (262)
.++..++.++..++..+..
T Consensus 203 ~~~~~~~~~l~~~~~~l~~ 221 (423)
T TIGR01843 203 RERAEAQGELGRLEAELEV 221 (423)
T ss_pred HHHHHHHhHHHHHHHHHHH
Confidence 3444455555556666654
No 398
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=37.55 E-value=1.5e+02 Score=30.21 Aligned_cols=56 Identities=27% Similarity=0.253 Sum_probs=35.3
Q ss_pred cHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024834 95 NREAVRKYREKKKA-------RTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRG 153 (262)
Q Consensus 95 NRESARRSR~RKQa-------HleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrg 153 (262)
--|.|..-|+|-.+ .++++.-++..||++...+.++ ...|..|+..||..+.++..
T Consensus 225 ~eee~aaERerglqteaqvek~i~EfdiEre~LRAel~ree~r---~K~lKeEmeSLkeiVkdlEA 287 (561)
T KOG1103|consen 225 GEEEAAAERERGLQTEAQVEKLIEEFDIEREFLRAELEREEKR---QKMLKEEMESLKEIVKDLEA 287 (561)
T ss_pred ChHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhhh
Confidence 34455555555433 4555555566666666555555 57888999999888877654
No 399
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=37.49 E-value=1.2e+02 Score=27.07 Aligned_cols=18 Identities=22% Similarity=0.272 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 024834 113 LEDEVVRLRAVNQQLLKR 130 (262)
Q Consensus 113 LE~QV~qLraeNqqLl~r 130 (262)
|..|+.+++.|.+-|.+.
T Consensus 34 Lr~EL~KvEeEI~TLrqv 51 (162)
T PF04201_consen 34 LRSELAKVEEEIQTLRQV 51 (162)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444333
No 400
>PRK11239 hypothetical protein; Provisional
Probab=37.48 E-value=48 Score=30.76 Aligned_cols=15 Identities=47% Similarity=0.388 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHH
Q 024834 138 EAEVARLKCLLVDIR 152 (262)
Q Consensus 138 EaEn~rLRaqL~elr 152 (262)
|+||+.||+++.++.
T Consensus 196 e~eva~L~~~l~~l~ 210 (215)
T PRK11239 196 EIEVAELKQRLDSLL 210 (215)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333344444443333
No 401
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=37.18 E-value=2.1e+02 Score=24.19 Aligned_cols=21 Identities=19% Similarity=0.265 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 024834 136 ALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 136 ~LEaEn~rLRaqL~elrgri~ 156 (262)
.||.|+.+.-..|.....+|.
T Consensus 84 ~LEeele~ae~~L~e~~ekl~ 104 (143)
T PF12718_consen 84 LLEEELEEAEKKLKETTEKLR 104 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433
No 402
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=36.91 E-value=1.4e+02 Score=25.61 Aligned_cols=43 Identities=21% Similarity=0.252 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024834 108 ARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRG 153 (262)
Q Consensus 108 aHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrg 153 (262)
+++.++.+.+.-....-..|...+ ..-++|+..||.+|.++..
T Consensus 80 a~~~e~qsli~~yE~~~~kLe~e~---~~Kdsei~~Lr~~L~~~~~ 122 (131)
T PF04859_consen 80 AEIQEQQSLIKTYEIVVKKLEAEL---RAKDSEIDRLREKLDELNR 122 (131)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 344444444444333333333333 3457888899988888654
No 403
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=36.69 E-value=1.8e+02 Score=30.42 Aligned_cols=11 Identities=18% Similarity=0.368 Sum_probs=5.6
Q ss_pred CCCCCCCCccc
Q 024834 48 PPGPDSSHTHT 58 (262)
Q Consensus 48 ppgp~~~htht 58 (262)
..|-.|+|+.-
T Consensus 290 ~k~s~f~~~ek 300 (594)
T PF05667_consen 290 DKGSRFTHSEK 300 (594)
T ss_pred ccccccccccc
Confidence 34445565554
No 404
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=36.57 E-value=1.9e+02 Score=29.92 Aligned_cols=24 Identities=17% Similarity=0.101 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh
Q 024834 133 GQAALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 133 ~~a~LEaEn~rLRaqL~elrgri~ 156 (262)
++..|+.|....+.....+..|++
T Consensus 377 e~~~L~Re~~~~~~~Y~~ll~r~~ 400 (754)
T TIGR01005 377 DLDALQRDAAAKRQLYESYLTNYR 400 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666655555
No 405
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=36.50 E-value=1.6e+02 Score=26.98 Aligned_cols=14 Identities=29% Similarity=0.366 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q 024834 137 LEAEVARLKCLLVD 150 (262)
Q Consensus 137 LEaEn~rLRaqL~e 150 (262)
|+..+..||.++..
T Consensus 125 Le~Ki~e~~~~~~~ 138 (225)
T COG1842 125 LEQKIAELRAKKEA 138 (225)
T ss_pred HHHHHHHHHHHHHH
Confidence 33334444443333
No 406
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=36.31 E-value=2.3e+02 Score=30.60 Aligned_cols=61 Identities=20% Similarity=0.272 Sum_probs=41.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHhhh
Q 024834 95 NREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQ------------------GQAALEAEVARLKCLLVDIRGRI 155 (262)
Q Consensus 95 NRESARRSR~RKQaHleeLE~QV~qLraeNqqLl~rLq------------------~~a~LEaEn~rLRaqL~elrgri 155 (262)
--||+..-..|=+.++.+||+++++++++-..-.++-. +.+.+-.|-..-|..|++|..-|
T Consensus 344 Elea~kqak~Klee~i~elEEElk~~k~ea~~ar~~~~~~e~ddiPmAqRkRFTRvEMaRVLMeRNqYKErLMELqEav 422 (832)
T KOG2077|consen 344 ELEAVKQAKLKLEEKIRELEEELKKAKAEAEDARQKAKDDEDDDIPMAQRKRFTRVEMARVLMERNQYKERLMELQEAV 422 (832)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 45788888888899999999999999988655533321 13334445555677777765543
No 407
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=36.30 E-value=89 Score=26.76 Aligned_cols=29 Identities=21% Similarity=0.266 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 103 REKKKARTASLEDEVVRLRAVNQQLLKRL 131 (262)
Q Consensus 103 R~RKQaHleeLE~QV~qLraeNqqLl~rL 131 (262)
...-.+||..|..+...|+.||..|...|
T Consensus 91 ~~qsLq~i~~L~nE~n~L~eEN~~L~eEl 119 (120)
T PF10482_consen 91 HLQSLQHIFELTNEMNTLKEENKKLKEEL 119 (120)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 33444566667777777777666665544
No 408
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=36.28 E-value=2.7e+02 Score=23.66 Aligned_cols=49 Identities=14% Similarity=0.211 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HH----HHHHHHHHHHHHHHHHHHhhhh
Q 024834 108 ARTASLEDEVVRLRAVNQQLLKRLQ-----GQ----AALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 108 aHleeLE~QV~qLraeNqqLl~rLq-----~~----a~LEaEn~rLRaqL~elrgri~ 156 (262)
+.+..|+.|+.+|+-+-++++.... .. ..++.|.+.+..+...+...+.
T Consensus 27 ~~i~~~d~el~QLefq~kr~~~e~~~~~~~~~~~i~~q~~~e~~~r~e~k~~l~~ql~ 84 (131)
T PF11068_consen 27 EQIQQLDQELQQLEFQGKRMIKEIKKQNAQQIQSIQQQFEQEKQERLEQKNQLLQQLE 84 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555566555555555543 22 2344555555554445555444
No 409
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=36.26 E-value=1.9e+02 Score=22.85 Aligned_cols=52 Identities=17% Similarity=0.129 Sum_probs=33.7
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhhhh
Q 024834 106 KKARTASLEDE-VVRLRAVNQQLLKRLQG----QAALEAEVARLKCLLVDIRGRIEG 157 (262)
Q Consensus 106 KQaHleeLE~Q-V~qLraeNqqLl~rLq~----~a~LEaEn~rLRaqL~elrgri~~ 157 (262)
....++.++.+ ..+|..+...|...|.. ...++.|+..|+.+-.-|...|+.
T Consensus 6 ~~~d~e~~~~e~k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~n 62 (80)
T PF10224_consen 6 NSEDIEKLEKEEKEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGN 62 (80)
T ss_pred chHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555544 56677777777666653 556777888888877777766654
No 410
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=36.21 E-value=1.8e+02 Score=21.64 Aligned_cols=44 Identities=25% Similarity=0.288 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024834 107 KARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRG 153 (262)
Q Consensus 107 QaHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrg 153 (262)
++.+.+++..++.++...+.|.++ .+..+.+...+..++.+|.+
T Consensus 5 ~e~l~~ie~~l~~~~~~i~~lE~~---~~~~e~~i~~~~~~l~~I~~ 48 (71)
T PF10779_consen 5 KEKLNRIETKLDNHEERIDKLEKR---DAANEKDIKNLNKQLEKIKS 48 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555444 34555566666666666544
No 411
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=36.19 E-value=1.6e+02 Score=27.87 Aligned_cols=27 Identities=22% Similarity=0.380 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 106 KKARTASLEDEVVRLRAVNQQLLKRLQ 132 (262)
Q Consensus 106 KQaHleeLE~QV~qLraeNqqLl~rLq 132 (262)
+++-+++|..-...|...|.+|.+.|+
T Consensus 4 rr~sl~el~~h~~~L~~~N~~L~~~Iq 30 (258)
T PF15397_consen 4 RRTSLQELKKHEDFLTKLNKELIKEIQ 30 (258)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 345577888888888888888888775
No 412
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=36.16 E-value=1.8e+02 Score=25.69 Aligned_cols=25 Identities=12% Similarity=0.214 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 109 RTASLEDEVVRLRAVNQQLLKRLQG 133 (262)
Q Consensus 109 HleeLE~QV~qLraeNqqLl~rLq~ 133 (262)
+++.|++++.+|+.+.++|+..-++
T Consensus 48 Q~~~LR~~~~~L~~~l~~Li~~Ar~ 72 (225)
T PF04340_consen 48 QLERLRERNRQLEEQLEELIENARE 72 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555544443
No 413
>smart00340 HALZ homeobox associated leucin zipper.
Probab=36.06 E-value=82 Score=22.78 Aligned_cols=19 Identities=26% Similarity=0.377 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 024834 135 AALEAEVARLKCLLVDIRG 153 (262)
Q Consensus 135 a~LEaEn~rLRaqL~elrg 153 (262)
..|-.||.||+.++.+|++
T Consensus 15 e~LteeNrRL~ke~~eLra 33 (44)
T smart00340 15 ESLTEENRRLQKEVQELRA 33 (44)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4566677777777777765
No 414
>COG4420 Predicted membrane protein [Function unknown]
Probab=36.02 E-value=1.1e+02 Score=27.96 Aligned_cols=10 Identities=40% Similarity=0.348 Sum_probs=7.4
Q ss_pred CcccHHHHHH
Q 024834 92 PLGNREAVRK 101 (262)
Q Consensus 92 mlsNRESARR 101 (262)
|.+||.|+|.
T Consensus 109 mSQNRQa~rD 118 (191)
T COG4420 109 MSQNRQAERD 118 (191)
T ss_pred HHHhHHHHHH
Confidence 6678888764
No 415
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=35.92 E-value=3.3e+02 Score=24.55 Aligned_cols=42 Identities=14% Similarity=0.200 Sum_probs=20.1
Q ss_pred hhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 88 TKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLK 129 (262)
Q Consensus 88 K~KRmlsNRESARRSR~RKQaHleeLE~QV~qLraeNqqLl~ 129 (262)
|+++..+.-+.|.+.+..=++.+++.+.++...+.+-++++.
T Consensus 37 R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~i~~ 78 (246)
T TIGR03321 37 REKKIAGELADADTKKREAEQERREYEEKNEELDQQREVLLT 78 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555544444444555555444444444444
No 416
>PF02609 Exonuc_VII_S: Exonuclease VII small subunit; InterPro: IPR003761 Exonuclease VII is composed of two non-identical subunits; one large subunit and 4 small ones []. This enzyme catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield nucleoside 5'-phosphates.; GO: 0008855 exodeoxyribonuclease VII activity, 0006308 DNA catabolic process, 0009318 exodeoxyribonuclease VII complex; PDB: 1VP7_F.
Probab=35.86 E-value=1.6e+02 Score=20.81 Aligned_cols=49 Identities=18% Similarity=0.119 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024834 108 ARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 108 aHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrgri~ 156 (262)
+.+++|+.-|++|+...-.|..-+.-+..=..-....+..|....++|.
T Consensus 3 e~~~~Le~Iv~~Le~~~~sLdes~~lyeeg~~l~~~c~~~L~~~e~~i~ 51 (53)
T PF02609_consen 3 EAMERLEEIVEKLESGELSLDESLKLYEEGMELIKKCQERLEEAEQKIE 51 (53)
T ss_dssp HHHHHHHHHHHHHHTT-S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4578888889999888777777776555444555666666766666654
No 417
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=35.78 E-value=2.1e+02 Score=31.87 Aligned_cols=11 Identities=27% Similarity=0.528 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 024834 112 SLEDEVVRLRA 122 (262)
Q Consensus 112 eLE~QV~qLra 122 (262)
+|.++|.++..
T Consensus 470 ~L~d~le~~~~ 480 (980)
T KOG0980|consen 470 NLNDQLEELQR 480 (980)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 418
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=35.52 E-value=1.8e+02 Score=26.16 Aligned_cols=44 Identities=23% Similarity=0.343 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Q 024834 108 ARTASLEDEVVRLRAVNQQLLKRLQG-------QAALEAEVARLKCLLVDI 151 (262)
Q Consensus 108 aHleeLE~QV~qLraeNqqLl~rLq~-------~a~LEaEn~rLRaqL~el 151 (262)
.++.+|+.++-+-+.+...|...|+. ....+.|+..|+.++..+
T Consensus 47 ~q~~~Lq~qLlq~~k~~~~l~~eLq~l~~~~~~k~~qe~eI~~Le~e~~~~ 97 (206)
T PF14988_consen 47 KQTSELQDQLLQKEKEQAKLQQELQALKEFRRLKEQQEREIQTLEEELEKM 97 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777888888878888888777763 234556666666555543
No 419
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=35.51 E-value=79 Score=23.79 Aligned_cols=19 Identities=26% Similarity=0.291 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 024834 110 TASLEDEVVRLRAVNQQLL 128 (262)
Q Consensus 110 leeLE~QV~qLraeNqqLl 128 (262)
+++|++.++.|++|...+.
T Consensus 23 v~EL~~RIa~L~aEI~R~~ 41 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLE 41 (59)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555544444444333
No 420
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=35.50 E-value=72 Score=31.76 Aligned_cols=8 Identities=38% Similarity=0.825 Sum_probs=5.8
Q ss_pred CCccccee
Q 024834 54 SHTHTCFH 61 (262)
Q Consensus 54 ~hthtc~h 61 (262)
-+||.|+=
T Consensus 148 E~tH~C~m 155 (475)
T PF10359_consen 148 EPTHDCLM 155 (475)
T ss_pred CCceeeEe
Confidence 57888864
No 421
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=35.50 E-value=1.8e+02 Score=28.01 Aligned_cols=48 Identities=19% Similarity=0.346 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHH--------HHHHHHHHHHHHHHHHHHHHhhh
Q 024834 108 ARTASLEDEVVRLRAVNQ-QLLKRLQ--------GQAALEAEVARLKCLLVDIRGRI 155 (262)
Q Consensus 108 aHleeLE~QV~qLraeNq-qLl~rLq--------~~a~LEaEn~rLRaqL~elrgri 155 (262)
..++.|+.|+.++....+ ++..++. ....++.++..|..++.+++.++
T Consensus 60 ~~~~~L~~ql~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~l~~~~ 116 (372)
T PF04375_consen 60 QQLQALQQQLQQLQQQLEAQQAQQLRQLQKQQQEQLQQLQQELAQLQQQLAELQQQL 116 (372)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666665555444 3333221 12344455555555555544444
No 422
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=35.49 E-value=2.9e+02 Score=27.70 Aligned_cols=61 Identities=18% Similarity=0.220 Sum_probs=31.6
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHhh
Q 024834 94 GNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQG--------QAALEAEVARLKCLLVDIRGR 154 (262)
Q Consensus 94 sNRESARRSR~RKQaHleeLE~QV~qLraeNqqLl~rLq~--------~a~LEaEn~rLRaqL~elrgr 154 (262)
.-||.-|+-|+.+-.++.-+.+.+++-..+...-.++|.. ...|.+...+|+....|..++
T Consensus 214 a~~eklR~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~ 282 (365)
T KOG2391|consen 214 AVREKLRRRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALEK 282 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 4566666666666666655555555544444444444331 234445555555555553333
No 423
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=35.25 E-value=1.8e+02 Score=22.31 Aligned_cols=21 Identities=29% Similarity=0.352 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 024834 112 SLEDEVVRLRAVNQQLLKRLQ 132 (262)
Q Consensus 112 eLE~QV~qLraeNqqLl~rLq 132 (262)
+|..++.+|+.+-..|...+.
T Consensus 2 ~l~~~l~~l~~d~~~l~~~~~ 22 (94)
T PF05957_consen 2 DLKAELEQLRADLEDLARSAA 22 (94)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666665554
No 424
>TIGR03789 pdsO proteobacterial sortase system OmpA family protein. A newly defined histidine kinase (TIGR03785) and response regulator (TIGR03787) gene pair occurs exclusively in Proteobacteria, mostly of marine origin, nearly all of which contain a subfamily 6 sortase (TIGR03784) and its single dedicated target protein (TIGR03788) adjacent to to the sortase. This protein family shows up in only in those species with the histidine kinase/response regulator gene pair, and often adjacent to that pair. It belongs to the OmpA protein family (pfam00691). Its function is unknown. We assign the gene symbol pdsO, for Proteobacterial Dedicated Sortase system OmpA family protein.
Probab=35.11 E-value=1.7e+02 Score=27.18 Aligned_cols=45 Identities=13% Similarity=0.062 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 108 ARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIR 152 (262)
Q Consensus 108 aHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elr 152 (262)
.++..-|.++..|+..++.|.....++.....++++|..+...+.
T Consensus 84 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (239)
T TIGR03789 84 QHIAQQRQQMVALTQKQQALEQLEAEYQQAQVHLETLQQDQQQLL 128 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 556666688888888888887777777777777777776544443
No 425
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=35.00 E-value=3.3e+02 Score=26.26 Aligned_cols=60 Identities=25% Similarity=0.346 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHH------HHH--------HHHHHHHHHHHHHHHHHHHHhhhhh
Q 024834 98 AVRKYREKKKARTASLEDEVVRLR-----AVNQQLLK------RLQ--------GQAALEAEVARLKCLLVDIRGRIEG 157 (262)
Q Consensus 98 SARRSR~RKQaHleeLE~QV~qLr-----aeNqqLl~------rLq--------~~a~LEaEn~rLRaqL~elrgri~~ 157 (262)
++++-=+|+-..++.|.+||.++. ..|++|.+ |+| .++.+.+|..+|...+..+..++++
T Consensus 161 ~l~~eLqkr~~~v~~l~~q~~k~~~~qv~~in~qlErLRL~krrlQl~g~Ld~~~q~~~~ae~seLq~r~~~l~~~L~~ 239 (289)
T COG4985 161 PLERELQKRLLEVETLRDQVDKMVEQQVRVINSQLERLRLEKRRLQLNGQLDDEFQQHYVAEKSELQKRLAQLQTELDA 239 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555566666666665443 33555432 222 1344555666665555555555543
No 426
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=34.85 E-value=83 Score=25.26 Aligned_cols=42 Identities=26% Similarity=0.356 Sum_probs=21.0
Q ss_pred hHHHhhccCccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 84 TEKKTKKRPLGN--REAVRKYREKKKARTASLEDEVVRLRAVNQ 125 (262)
Q Consensus 84 ~d~RK~KRmlsN--RESARRSR~RKQaHleeLE~QV~qLraeNq 125 (262)
.+.|-+++-++. |++--.-..==+.++...|.|+..||.+|+
T Consensus 24 ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~LrkENr 67 (85)
T PF15188_consen 24 VESRLRRRELSPEARRSLEKELNELKEKLENNEKELKLLRKENR 67 (85)
T ss_pred HHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhh
Confidence 344445555553 333332222234455666666666666664
No 427
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=34.69 E-value=2.7e+02 Score=23.73 Aligned_cols=45 Identities=13% Similarity=0.252 Sum_probs=35.8
Q ss_pred hhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 88 TKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQ 132 (262)
Q Consensus 88 K~KRmlsNRESARRSR~RKQaHleeLE~QV~qLraeNqqLl~rLq 132 (262)
|.++-..+-..|.+.|+-=++.+++.+.++...|.+-+.++..-+
T Consensus 38 R~~~I~~~l~~A~~~~~ea~~~~~~~~~~l~~Ar~~a~~Ii~~A~ 82 (161)
T COG0711 38 RQAKIADDLAEAERLKEEAQALLAEYEQELEEAREQASEIIEQAK 82 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677788888888888888888888888888887777766654
No 428
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=34.67 E-value=1.6e+02 Score=23.00 Aligned_cols=36 Identities=19% Similarity=0.218 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 110 TASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLK 145 (262)
Q Consensus 110 leeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLR 145 (262)
+..|+.++..|.+...+|...+..+..+..++..|.
T Consensus 8 ~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~ 43 (129)
T cd00890 8 LQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETLK 43 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444444444444444444444444444444443
No 429
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=34.65 E-value=2.4e+02 Score=26.72 Aligned_cols=43 Identities=19% Similarity=0.335 Sum_probs=30.1
Q ss_pred ccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 90 KRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQ 132 (262)
Q Consensus 90 KRmlsNRESARRSR~RKQaHleeLE~QV~qLraeNqqLl~rLq 132 (262)
+++..=+.-=..--.+-..++..|+.||.+|.+......+.|+
T Consensus 63 ~~l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~ 105 (258)
T PF15397_consen 63 KQLQQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELN 105 (258)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444445667778889999999999888877777775
No 430
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=34.65 E-value=1.8e+02 Score=32.36 Aligned_cols=14 Identities=36% Similarity=0.582 Sum_probs=9.6
Q ss_pred hccCcccHHHHHHH
Q 024834 89 KKRPLGNREAVRKY 102 (262)
Q Consensus 89 ~KRmlsNRESARRS 102 (262)
+||.+--|||||+-
T Consensus 391 rkkeie~rEaar~E 404 (1118)
T KOG1029|consen 391 RKKEIERREAAREE 404 (1118)
T ss_pred HHHHHHHHHHHHHH
Confidence 34556678888874
No 431
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=34.60 E-value=2.1e+02 Score=22.79 Aligned_cols=9 Identities=44% Similarity=0.641 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q 024834 123 VNQQLLKRL 131 (262)
Q Consensus 123 eNqqLl~rL 131 (262)
+|.+|..+|
T Consensus 6 qNk~L~~kL 14 (76)
T PF11544_consen 6 QNKELKKKL 14 (76)
T ss_dssp HHHHHHHHH
T ss_pred HhHHHHHHH
Confidence 344444443
No 432
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=34.31 E-value=3.1e+02 Score=26.69 Aligned_cols=19 Identities=11% Similarity=0.253 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 024834 137 LEAEVARLKCLLVDIRGRI 155 (262)
Q Consensus 137 LEaEn~rLRaqL~elrgri 155 (262)
+++++..+++++..++.++
T Consensus 296 ~~~~l~~~~~~l~~a~~~l 314 (457)
T TIGR01000 296 LNQKLLELESKIKSLKEDS 314 (457)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444
No 433
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=34.18 E-value=1.6e+02 Score=24.99 Aligned_cols=43 Identities=21% Similarity=0.254 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 024834 112 SLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIEG 157 (262)
Q Consensus 112 eLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrgri~~ 157 (262)
.|..||-+|+.....|-.|+ ..+..|+-.||++---|-+.|+.
T Consensus 60 RlItQVLELQnTLdDLSqRV---dsVKEEnLKLrSENQVLGQYIeN 102 (120)
T KOG3650|consen 60 RLITQVLELQNTLDDLSQRV---DSVKEENLKLRSENQVLGQYIEN 102 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHhhhhhhhhhHHHHHHHHH
Confidence 47788888888888888886 45667777777765555555553
No 434
>KOG2070 consensus Guanine nucleotide exchange factor [Nucleotide transport and metabolism]
Probab=34.17 E-value=91 Score=32.80 Aligned_cols=30 Identities=27% Similarity=0.419 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 112 SLEDEVVRLRAVNQQLLKRLQGQAALEAEV 141 (262)
Q Consensus 112 eLE~QV~qLraeNqqLl~rLq~~a~LEaEn 141 (262)
.|.+||.+|+.+|+++.+.|.+..++.+++
T Consensus 620 alkd~v~~lqqd~~kmkk~leeEqkaRrdL 649 (661)
T KOG2070|consen 620 ALKDEVSELQQDNKKMKKVLEEEQKARRDL 649 (661)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366778888888888877765443333333
No 435
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=34.11 E-value=2.6e+02 Score=28.71 Aligned_cols=51 Identities=12% Similarity=0.147 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----------HHHH-HHHHHHHHHHHHHHHHHHHHHhhhh
Q 024834 106 KKARTASLEDEVVRLRAVNQQL----------LKRL-QGQAALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 106 KQaHleeLE~QV~qLraeNqqL----------l~rL-q~~a~LEaEn~rLRaqL~elrgri~ 156 (262)
-.+.++.||.+++.|.++...- +.++ .++..+++++..|-.+|.++...++
T Consensus 568 ~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~w~~l~~~~~ 629 (638)
T PRK10636 568 LEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEMAWLEAQEQLE 629 (638)
T ss_pred HHHHHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666665554211 1111 1244555555555555555555443
No 436
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=34.10 E-value=2e+02 Score=21.38 Aligned_cols=14 Identities=36% Similarity=0.553 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHH
Q 024834 135 AALEAEVARLKCLL 148 (262)
Q Consensus 135 a~LEaEn~rLRaqL 148 (262)
..|+++|..||..|
T Consensus 43 ~~L~~qN~eLr~lL 56 (60)
T PF14775_consen 43 ESLEQQNEELRSLL 56 (60)
T ss_pred HHHHHHHHHHHHHH
Confidence 44455555555444
No 437
>PLN02678 seryl-tRNA synthetase
Probab=33.99 E-value=1.9e+02 Score=29.19 Aligned_cols=27 Identities=7% Similarity=0.297 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhccccc
Q 024834 137 LEAEVARLKCLLVDIRGRIEGEIGSFP 163 (262)
Q Consensus 137 LEaEn~rLRaqL~elrgri~~~iG~fp 163 (262)
|..|+..|..++.++..+|...+-.+|
T Consensus 83 Lk~ei~~le~~~~~~~~~l~~~~~~iP 109 (448)
T PLN02678 83 LKKEITEKEAEVQEAKAALDAKLKTIG 109 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 444455555555555555554443434
No 438
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=33.97 E-value=1.8e+02 Score=29.60 Aligned_cols=26 Identities=23% Similarity=0.337 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhcc
Q 024834 135 AALEAEVARLKCLLVDIRGRIEGEIG 160 (262)
Q Consensus 135 a~LEaEn~rLRaqL~elrgri~~~iG 160 (262)
..++-.+..|..+-.+|+..|+.+|.
T Consensus 470 ~~l~pkL~~l~~~Tr~Lq~~iE~~IS 495 (507)
T PF05600_consen 470 QELEPKLDALVERTRELQKQIEADIS 495 (507)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666667777777664
No 439
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=33.95 E-value=1.6e+02 Score=27.24 Aligned_cols=19 Identities=21% Similarity=0.059 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 024834 137 LEAEVARLKCLLVDIRGRI 155 (262)
Q Consensus 137 LEaEn~rLRaqL~elrgri 155 (262)
.++++..+++++...+..+
T Consensus 188 ~~a~~~~~~a~l~~a~~~l 206 (346)
T PRK10476 188 LVAQRAAREAALAIAELHL 206 (346)
T ss_pred hHHHHHHHHHHHHHHHHHh
Confidence 3444445555555444443
No 440
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=33.92 E-value=1.9e+02 Score=21.19 Aligned_cols=47 Identities=6% Similarity=0.179 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhhh
Q 024834 109 RTASLEDEVVRLRAVNQQLLKRLQG-----QAALEAEVARLKCLLVDIRGRI 155 (262)
Q Consensus 109 HleeLE~QV~qLraeNqqLl~rLq~-----~a~LEaEn~rLRaqL~elrgri 155 (262)
.+.+++..+.+......++.-.++. -..+...+...|.++..+...+
T Consensus 26 ~i~~~e~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~lk~~l 77 (79)
T PF05008_consen 26 LIREIERDLDEAEELLKQMELEVRSLPPSERNQYKSKLRSYRSELKKLKKEL 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444444432 2345555556666666555443
No 441
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=33.78 E-value=1.7e+02 Score=23.92 Aligned_cols=27 Identities=19% Similarity=0.270 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 106 KKARTASLEDEVVRLRAVNQQLLKRLQ 132 (262)
Q Consensus 106 KQaHleeLE~QV~qLraeNqqLl~rLq 132 (262)
+...++.|..+..+|+.+.+.|...+.
T Consensus 4 ~~~~l~~l~~~~~~l~~~~~~l~~~~~ 30 (140)
T PRK03947 4 SEQELEELAAQLQALQAQIEALQQQLE 30 (140)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666666655553
No 442
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=33.73 E-value=2.8e+02 Score=23.97 Aligned_cols=15 Identities=27% Similarity=0.246 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHH
Q 024834 108 ARTASLEDEVVRLRA 122 (262)
Q Consensus 108 aHleeLE~QV~qLra 122 (262)
.|+..||.++...+.
T Consensus 24 ~~v~~LEreLe~~q~ 38 (140)
T PF10473_consen 24 DHVESLERELEMSQE 38 (140)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345555555444333
No 443
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=33.72 E-value=2.5e+02 Score=28.55 Aligned_cols=67 Identities=25% Similarity=0.259 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhhhhhcccc
Q 024834 96 REAVRKYREKKKA-RTASLEDEVVRLRAVNQQLLKRLQGQA----ALEAEVARLKCLLVDIRGRIEGEIGSF 162 (262)
Q Consensus 96 RESARRSR~RKQa-HleeLE~QV~qLraeNqqLl~rLq~~a----~LEaEn~rLRaqL~elrgri~~~iG~f 162 (262)
-+.+.++|-+|.+ .+.++++.+.....+-+.+...|+... .-..++..||....+++..|-.....|
T Consensus 92 e~~~~~~~f~~a~~~~~~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk~ll~~~~~~ 163 (569)
T PRK04778 92 EELNDKFRFRKAKHEINEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKSLLANRFSF 163 (569)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 3567778877754 467788888888888888887777533 334556677777777777776554444
No 444
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=33.62 E-value=84 Score=24.14 Aligned_cols=16 Identities=25% Similarity=0.412 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 024834 136 ALEAEVARLKCLLVDI 151 (262)
Q Consensus 136 ~LEaEn~rLRaqL~el 151 (262)
.++.|+.+|+.++..+
T Consensus 53 ~l~~e~~~L~lE~~~l 68 (97)
T PF04999_consen 53 QLQEENERLRLEIATL 68 (97)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3444555555554444
No 445
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=33.62 E-value=2.6e+02 Score=29.82 Aligned_cols=57 Identities=26% Similarity=0.330 Sum_probs=0.0
Q ss_pred HHHHHHHHH--HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024834 97 EAVRKYREK--KKART--ASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 97 ESARRSR~R--KQaHl--eeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrgri~ 156 (262)
+|....|+. ++.++ ++++..|+.|+.+-++-+++| ..++.+...|+.....|.+|++
T Consensus 543 ~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L---~~l~e~~~~l~~~ae~LaeR~e 603 (717)
T PF10168_consen 543 QATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKEL---QELQEERKSLRESAEKLAERYE 603 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
No 446
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=33.46 E-value=3e+02 Score=23.34 Aligned_cols=46 Identities=13% Similarity=0.142 Sum_probs=33.3
Q ss_pred HhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 87 KTKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQ 132 (262)
Q Consensus 87 RK~KRmlsNRESARRSR~RKQaHleeLE~QV~qLraeNqqLl~rLq 132 (262)
+|+.+..++-+.|.+.|..=.+-+++-+.++...+.+-+.++....
T Consensus 41 ~R~~~I~~~l~~Ae~~k~eAe~~~~~~e~~L~~A~~ea~~Ii~~A~ 86 (167)
T PRK14475 41 AYAAKIQAELDEAQRLREEAQALLADVKAEREEAERQAAAMLAAAK 86 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666777777777777777777778887777777777766654
No 447
>PRK01885 greB transcription elongation factor GreB; Reviewed
Probab=33.46 E-value=2e+02 Score=24.73 Aligned_cols=47 Identities=13% Similarity=0.087 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHhhhh
Q 024834 110 TASLEDEVVRLRA-VNQQLLKRLQG------------QAALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 110 leeLE~QV~qLra-eNqqLl~rLq~------------~a~LEaEn~rLRaqL~elrgri~ 156 (262)
++.|++++.+|+. +..++.++|+. |.+-..+...|...+.+|..+|.
T Consensus 12 ~~~L~~EL~~L~~~~r~e~~~~i~~Ar~~GDl~ENaeY~aAk~~~~~~e~rI~~L~~~L~ 71 (157)
T PRK01885 12 YARLKQELDYLWREERPEVTQKVSWAASLGDRSENADYIYGKKRLREIDRRVRFLTKRLE 71 (157)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHcCCcchhhcHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4455666666644 44455555431 33344455556666666666666
No 448
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=33.42 E-value=2.4e+02 Score=24.86 Aligned_cols=20 Identities=30% Similarity=0.227 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 024834 112 SLEDEVVRLRAVNQQLLKRL 131 (262)
Q Consensus 112 eLE~QV~qLraeNqqLl~rL 131 (262)
.|+.++..+.++..+|...|
T Consensus 83 ~l~~~~~~~e~~~a~l~~~l 102 (158)
T PF09486_consen 83 VLEERVRAAEAELAALRQAL 102 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333344444443333333
No 449
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=33.42 E-value=14 Score=38.15 Aligned_cols=44 Identities=30% Similarity=0.252 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 106 KKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLV 149 (262)
Q Consensus 106 KQaHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~ 149 (262)
...|+.+||.++.+|+.++..|.........|+.|+..|+..|.
T Consensus 255 ql~~i~~LE~en~~l~~Elk~Lr~~~~n~elLeEe~~sLq~kl~ 298 (722)
T PF05557_consen 255 QLAHIRELEKENRRLREELKHLRQSQENVELLEEEKRSLQRKLE 298 (722)
T ss_dssp --------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 46688888888888888888877766555556666655554444
No 450
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=33.30 E-value=1.8e+02 Score=31.08 Aligned_cols=33 Identities=21% Similarity=0.313 Sum_probs=20.1
Q ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 024834 97 EAVRKYREKK---KARTASLEDEVVRLRAVNQQLLK 129 (262)
Q Consensus 97 ESARRSR~RK---QaHleeLE~QV~qLraeNqqLl~ 129 (262)
||+-+.|.++ -+.+++|+.++.+|+.+.+.+.+
T Consensus 391 ~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (852)
T TIGR03346 391 EAAARIRMEIDSKPEELDELDRRIIQLEIEREALKK 426 (852)
T ss_pred HHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHh
Confidence 5566666542 34567777777777666666543
No 451
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=33.22 E-value=2.1e+02 Score=31.60 Aligned_cols=10 Identities=30% Similarity=0.169 Sum_probs=4.7
Q ss_pred HHHHHhcccc
Q 024834 29 FFEDILKDTH 38 (262)
Q Consensus 29 ~~d~~l~~t~ 38 (262)
.|.-+|.+|.
T Consensus 608 ~~~~~l~~t~ 617 (1163)
T COG1196 608 AVRFVLGDTL 617 (1163)
T ss_pred HHHHHhCCeE
Confidence 3444555543
No 452
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=33.18 E-value=1.9e+02 Score=27.12 Aligned_cols=27 Identities=33% Similarity=0.356 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 024834 133 GQAALEAEVARLKCLLVDIRGRIEGEI 159 (262)
Q Consensus 133 ~~a~LEaEn~rLRaqL~elrgri~~~i 159 (262)
+.+.|.+||+.|+..+..++..|.-++
T Consensus 117 EF~~lr~e~EklkndlEk~ks~lr~ei 143 (220)
T KOG3156|consen 117 EFANLRAENEKLKNDLEKLKSSLRHEI 143 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666666666555555443
No 453
>PHA03252 DNA packaging tegument protein UL25; Provisional
Probab=33.04 E-value=2.4e+02 Score=29.73 Aligned_cols=50 Identities=20% Similarity=0.174 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 024834 96 REAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQG-QAALEAEVARLKC 146 (262)
Q Consensus 96 RESARRSR~RKQaHleeLE~QV~qLraeNqqLl~rLq~-~a~LEaEn~rLRa 146 (262)
|+||.+.|.++..-..+ .-....|++|-..|.++++. ...|++.+..+..
T Consensus 36 ~~a~~~~R~~~~~~~~~-~~~~~~l~~ELd~l~~~~~~~~~~l~~~l~~~e~ 86 (589)
T PHA03252 36 DDSALRLRRYREDLLRD-RLLRRRLGEELDDLQKRLQTECEDLRSRVSEAEA 86 (589)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57778888555443333 22335566666666666542 2233444444333
No 454
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=32.95 E-value=3.2e+02 Score=28.57 Aligned_cols=61 Identities=11% Similarity=0.135 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHhhh
Q 024834 95 NREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQG-------------QAALEAEVARLKCLLVDIRGRI 155 (262)
Q Consensus 95 NRESARRSR~RKQaHleeLE~QV~qLraeNqqLl~rLq~-------------~a~LEaEn~rLRaqL~elrgri 155 (262)
+++...+....-++-++.|++|+.+|+.+-.....+|+. ...+-.++..|+.|+.+++.++
T Consensus 254 i~~~l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~~~~~l~~ql~~l~~~~ 327 (726)
T PRK09841 254 LQQNIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQLNELTFRE 327 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
No 455
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=32.95 E-value=2.1e+02 Score=22.50 Aligned_cols=37 Identities=11% Similarity=0.205 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 111 ASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVD 150 (262)
Q Consensus 111 eeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~e 150 (262)
..|+.+++.|..+...|...+ ..++.+...|+..+.+
T Consensus 66 ~~Le~~~e~le~~i~~l~~~~---~~l~~~~~elk~~l~~ 102 (105)
T cd00632 66 TELKERLETIELRIKRLERQE---EDLQEKLKELQEKIQQ 102 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 334444444444443333332 3344444444444443
No 456
>COG3166 PilN Tfp pilus assembly protein PilN [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=32.92 E-value=1.8e+02 Score=26.48 Aligned_cols=67 Identities=19% Similarity=0.204 Sum_probs=45.4
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 024834 92 PLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIEGE 158 (262)
Q Consensus 92 mlsNRESARRSR~RKQaHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrgri~~~ 158 (262)
+..+++-.--.=.+.+++++....+|.+|+++-+.++.+++.+..++..-..--..+.+|...|-+.
T Consensus 49 ~~~~q~~~~~~L~~e~~~l~~~~aei~~l~~~~~~~~qr~q~~~~~q~~r~~~s~~le~L~~~lP~~ 115 (206)
T COG3166 49 QIAEQQQRNALLTTEIALLDAEIAEIQQLKEQTQALLQRLQVIEQLQQKRAGWSVLLEQLANLLPES 115 (206)
T ss_pred hhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHcccchHHHHHHHHHHhCCCc
Confidence 4555555555566777788888888888888888888888776666433333334566666666643
No 457
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=32.90 E-value=2.5e+02 Score=28.62 Aligned_cols=66 Identities=21% Similarity=0.266 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhhhhhcccc
Q 024834 97 EAVRKYREKKKA-RTASLEDEVVRLRAVNQQLLKRLQGQAA----LEAEVARLKCLLVDIRGRIEGEIGSF 162 (262)
Q Consensus 97 ESARRSR~RKQa-HleeLE~QV~qLraeNqqLl~rLq~~a~----LEaEn~rLRaqL~elrgri~~~iG~f 162 (262)
+.+.++|-+|.+ .+.++++++..+..+-..+...|..... -..++..|+....+++..|......|
T Consensus 89 ~~~~~~rf~ka~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~~~ 159 (560)
T PF06160_consen 89 EYADKYRFKKAKQAIKEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKELLAHSFSY 159 (560)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 456677766644 4567777777777777777777764333 33456667777777777766554444
No 458
>PF11414 Suppressor_APC: Adenomatous polyposis coli tumour suppressor protein; PDB: 1M5I_A.
Probab=32.77 E-value=1.6e+02 Score=23.43 Aligned_cols=39 Identities=26% Similarity=0.193 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024834 108 ARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 108 aHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrgri~ 156 (262)
+||++||.|..-|-. +...+|.+-..-..++..+..|+.
T Consensus 7 k~mkeLEqEkd~LLq----------gLe~~Er~r~Wy~~qL~~vq~rq~ 45 (84)
T PF11414_consen 7 KRMKELEQEKDVLLQ----------GLEMEERERDWYQQQLQSVQERQR 45 (84)
T ss_dssp HHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHh----------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666554432 234556666666777777777666
No 459
>PF08961 DUF1875: Domain of unknown function (DUF1875); InterPro: IPR015056 MIT can be found in the Nuclear receptor-binding factor 2, it has no known function. ; PDB: 2CRB_A.
Probab=32.62 E-value=15 Score=34.54 Aligned_cols=17 Identities=24% Similarity=0.403 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 024834 107 KARTASLEDEVVRLRAV 123 (262)
Q Consensus 107 QaHleeLE~QV~qLrae 123 (262)
|..|+|...+++.|+..
T Consensus 121 KT~IEEQ~T~I~dLrrl 137 (243)
T PF08961_consen 121 KTRIEEQATKIADLRRL 137 (243)
T ss_dssp -----------------
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 33444444444444433
No 460
>PRK13848 conjugal transfer protein TraC; Provisional
Probab=32.60 E-value=74 Score=26.40 Aligned_cols=52 Identities=21% Similarity=0.344 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHhhhhhhcc
Q 024834 109 RTASLEDEVVRLRAVNQQLLKRLQG----------QAALEAEVARLKCLLVDIRGRIEGEIG 160 (262)
Q Consensus 109 HleeLE~QV~qLraeNqqLl~rLq~----------~a~LEaEn~rLRaqL~elrgri~~~iG 160 (262)
...++.+|+++|+++..+++.+-.+ ...+|-+-..|.....+|..|....-|
T Consensus 4 ~~s~I~~eI~kLqe~lk~~e~keAERigRiAlKAGLgeieI~d~eL~~aFeeiAaRFR~g~~ 65 (98)
T PRK13848 4 PSSKIREEIAKLQEQLKQAETREAERIGRIALKAGLGEIEIEEAELQAAFEELAKRFRGGKG 65 (98)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccCHHHHHHHHHHHHHHHhcCCC
Confidence 3456778888888888877776542 223333446788888889888875444
No 461
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=32.56 E-value=1.1e+02 Score=28.88 Aligned_cols=25 Identities=32% Similarity=0.306 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 109 RTASLEDEVVRLRAVNQQLLKRLQG 133 (262)
Q Consensus 109 HleeLE~QV~qLraeNqqLl~rLq~ 133 (262)
+.+.|.+|..+|+.+++++..++..
T Consensus 40 ~~~~lr~e~~~l~~~~~~~~~~~~~ 64 (308)
T PF11382_consen 40 QFDSLREENDELRAELDALQAQLNA 64 (308)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555543
No 462
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=32.49 E-value=3.4e+02 Score=30.41 Aligned_cols=26 Identities=19% Similarity=0.248 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHH---HHHHHHhhhhhhc
Q 024834 134 QAALEAEVARLKC---LLVDIRGRIEGEI 159 (262)
Q Consensus 134 ~a~LEaEn~rLRa---qL~elrgri~~~i 159 (262)
...+..++..|+. .+.++..++...+
T Consensus 264 ~~~l~~ql~~l~~~~~~~~~~~~rL~~~i 292 (1311)
T TIGR00606 264 IMKLDNEIKALKSRKKQMEKDNSELELKM 292 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444445555544 3334444444433
No 463
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=32.48 E-value=2.7e+02 Score=22.47 Aligned_cols=45 Identities=13% Similarity=0.158 Sum_probs=31.7
Q ss_pred hhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 88 TKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQ 132 (262)
Q Consensus 88 K~KRmlsNRESARRSR~RKQaHleeLE~QV~qLraeNqqLl~rLq 132 (262)
|+.+..++=+.|...+..=++.+.+.+.++...+.+-.+++....
T Consensus 37 R~~~I~~~l~~Ae~~~~ea~~~~~~~e~~L~~a~~ea~~i~~~a~ 81 (140)
T PRK07353 37 REDYIRTNRAEAKERLAEAEKLEAQYEQQLASARKQAQAVIAEAE 81 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666677777777777777777777777777777766654
No 464
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=32.35 E-value=2.1e+02 Score=25.75 Aligned_cols=28 Identities=14% Similarity=0.357 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 024834 131 LQGQAALEAEVARLKCLLVDIRGRIEGE 158 (262)
Q Consensus 131 Lq~~a~LEaEn~rLRaqL~elrgri~~~ 158 (262)
+.+...+|.|+.+.|.++..+.+++..-
T Consensus 161 ~~d~l~ie~~L~~v~~eIe~~~~~~~~l 188 (262)
T PF14257_consen 161 VEDLLEIERELSRVRSEIEQLEGQLKYL 188 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3356688889999999999888887743
No 465
>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S. cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].
Probab=32.31 E-value=1.5e+02 Score=26.10 Aligned_cols=55 Identities=18% Similarity=0.307 Sum_probs=37.9
Q ss_pred HHhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 86 KKTKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVD 150 (262)
Q Consensus 86 ~RK~KRmlsNRESARRSR~RKQaHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~e 150 (262)
++..++.+..|..|+-|=++|-....+|..++++.+... +.+|..|..|-++++.
T Consensus 83 ~~Em~KLi~yk~~aKsyAkkKD~Ea~~L~~KLkeEq~kv----------~~ME~~v~elas~m~~ 137 (152)
T PF11500_consen 83 EKEMEKLIKYKQLAKSYAKKKDAEAMRLAEKLKEEQEKV----------AEMERHVTELASQMAS 137 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHH
Confidence 455688888999999998888888888876654444322 4456666666665554
No 466
>PF11690 DUF3287: Protein of unknown function (DUF3287); InterPro: IPR021704 This eukaryotic family of proteins has no known function.
Probab=32.28 E-value=1.2e+02 Score=25.41 Aligned_cols=38 Identities=18% Similarity=0.220 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 108 ARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKC 146 (262)
Q Consensus 108 aHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRa 146 (262)
.-++.++.|=.++..++++|.++++.. .+|.++..|-+
T Consensus 42 ~F~~kV~~qH~~~~~e~r~L~kKi~~l-~veRkmr~Les 79 (109)
T PF11690_consen 42 DFIDKVVDQHQRYCDERRKLRKKIQDL-RVERKMRALES 79 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhccC
Confidence 457778888888999999999998765 44555555543
No 467
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=32.27 E-value=3.3e+02 Score=25.21 Aligned_cols=63 Identities=17% Similarity=0.186 Sum_probs=40.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhhh
Q 024834 94 GNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQGQ----AALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 94 sNRESARRSR~RKQaHleeLE~QV~qLraeNqqLl~rLq~~----a~LEaEn~rLRaqL~elrgri~ 156 (262)
.-=|.+.+.|.....+.++|+.++..|+.+.+.|...|... -.+-.....++-.+++...|+.
T Consensus 102 e~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~~e~dpqv~~k~~~~~K~~~eaanrwt 168 (203)
T KOG3433|consen 102 ESIENRKAGREETEERTDELTKKLNSLKKILESLRWELAKIQETDPQVFEKKVHLEKTMAEAANRWT 168 (203)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHhhhh
Confidence 34456667788888888889999988888777777776421 1222333445555555555554
No 468
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=32.25 E-value=4e+02 Score=24.45 Aligned_cols=58 Identities=24% Similarity=0.312 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhhh
Q 024834 99 VRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQ----GQAALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 99 ARRSR~RKQaHleeLE~QV~qLraeNqqLl~rLq----~~a~LEaEn~rLRaqL~elrgri~ 156 (262)
..|.=..-++++..|...+..-+++-++...+-+ +-..|++|-..++.+|..+...|.
T Consensus 117 ~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~ 178 (192)
T PF11180_consen 117 LERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVR 178 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444556666666666666665555554432 245677777777888887777666
No 469
>PRK11519 tyrosine kinase; Provisional
Probab=32.22 E-value=2.8e+02 Score=28.89 Aligned_cols=61 Identities=15% Similarity=0.174 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHhhh
Q 024834 95 NREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAA------LEAEVARLKCLLVDIRGRI 155 (262)
Q Consensus 95 NRESARRSR~RKQaHleeLE~QV~qLraeNqqLl~rLq~~a~------LEaEn~rLRaqL~elrgri 155 (262)
.++...+.+..-++-++.|++|+.+|+.+-+...++|+.+.. ++.|...+-.++.+++.++
T Consensus 254 i~~~~~~k~~~a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~~vd~~~ea~~~l~~~~~l~~ql 320 (719)
T PRK11519 254 LEQNIERKSEEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKDSVDLPLEAKAVLDSMVNIDAQL 320 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHH
No 470
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=32.13 E-value=3.5e+02 Score=23.77 Aligned_cols=55 Identities=20% Similarity=0.230 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 024834 100 RKYREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIEG 157 (262)
Q Consensus 100 RRSR~RKQaHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrgri~~ 157 (262)
++-..||..+-+.|++.+..++.+-.++...+. .-.+++...+..|.....+|+.
T Consensus 7 ~~~~~rr~R~~~rL~~~L~~~r~al~~~~a~~~---~~~a~v~~~~~~l~~~~~ri~~ 61 (158)
T PF09486_consen 7 RTLIQRRRRRERRLRARLAAQRRALAAAEAELA---EQQAEVEAARQRLRAHDARIDA 61 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhHHHHHHH
Confidence 456678888888899999888888888877763 3345555555555556666664
No 471
>KOG3910 consensus Helix loop helix transcription factor [Transcription]
Probab=32.08 E-value=1.2e+02 Score=31.77 Aligned_cols=17 Identities=18% Similarity=0.274 Sum_probs=10.0
Q ss_pred ccccchHHH-hhccCccc
Q 024834 79 DTAESTEKK-TKKRPLGN 95 (262)
Q Consensus 79 d~~e~~d~R-K~KRmlsN 95 (262)
.+.|.+++| |.|||..|
T Consensus 514 l~peqkaeREkERR~aNN 531 (632)
T KOG3910|consen 514 LNPEQKAEREKERRMANN 531 (632)
T ss_pred cChhhhhhHHHHHHhhhh
Confidence 444555555 56777666
No 472
>PRK10722 hypothetical protein; Provisional
Probab=32.07 E-value=1.8e+02 Score=27.62 Aligned_cols=18 Identities=33% Similarity=0.423 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 024834 114 EDEVVRLRAVNQQLLKRL 131 (262)
Q Consensus 114 E~QV~qLraeNqqLl~rL 131 (262)
++|+..|+.++..|..+|
T Consensus 175 D~qlD~lrqq~~~Lq~~L 192 (247)
T PRK10722 175 DSELDALRQQQQRLQYQL 192 (247)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 355555555555554444
No 473
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=32.06 E-value=1.8e+02 Score=21.93 Aligned_cols=18 Identities=44% Similarity=0.567 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 024834 135 AALEAEVARLKCLLVDIR 152 (262)
Q Consensus 135 a~LEaEn~rLRaqL~elr 152 (262)
+.|++|++|+++.+..-+
T Consensus 31 a~L~aEI~R~~~~~~~K~ 48 (59)
T PF06698_consen 31 ALLEAEIARLEAAIAKKS 48 (59)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 667888888887766543
No 474
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=32.00 E-value=5.5e+02 Score=26.32 Aligned_cols=39 Identities=26% Similarity=0.274 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 024834 118 VRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIEGEI 159 (262)
Q Consensus 118 ~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrgri~~~i 159 (262)
+.||.+...|.++| ...+.|++.|+.++.--...|+.-|
T Consensus 352 aaLrkerd~L~keL---eekkreleql~~q~~v~~saLdtCi 390 (442)
T PF06637_consen 352 AALRKERDSLAKEL---EEKKRELEQLKMQLAVKTSALDTCI 390 (442)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 66777777777776 4456777778877776666666543
No 475
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=31.96 E-value=3.4e+02 Score=26.59 Aligned_cols=18 Identities=22% Similarity=0.302 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 024834 137 LEAEVARLKCLLVDIRGR 154 (262)
Q Consensus 137 LEaEn~rLRaqL~elrgr 154 (262)
+......|..++.++..+
T Consensus 380 l~~~~~~l~~~~~~l~~~ 397 (451)
T PF03961_consen 380 LKEKKKELKEELKELKEE 397 (451)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333334444444444333
No 476
>COG1561 Uncharacterized stress-induced protein [Function unknown]
Probab=31.93 E-value=1.8e+02 Score=28.18 Aligned_cols=19 Identities=26% Similarity=0.480 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 024834 137 LEAEVARLKCLLVDIRGRI 155 (262)
Q Consensus 137 LEaEn~rLRaqL~elrgri 155 (262)
+..|+.||++-+.+.+.-|
T Consensus 217 I~EEldRL~sHv~~~~~iL 235 (290)
T COG1561 217 IAEELDRLKSHVKEFRNIL 235 (290)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4456667777666666655
No 477
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=31.87 E-value=2.1e+02 Score=27.72 Aligned_cols=46 Identities=22% Similarity=0.348 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 024834 109 RTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIEG 157 (262)
Q Consensus 109 HleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrgri~~ 157 (262)
++++||+.+..|......+...+ ..++.++..|...+.++..++..
T Consensus 145 Ri~e~Eeris~lEd~~~~i~~~~---~~~~k~i~~l~~kl~DlEnrsRR 190 (370)
T PF02994_consen 145 RIDELEERISELEDRIEEIEQAI---KELEKRIKKLEDKLDDLENRSRR 190 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhHHHHHHHHHHHHhhHH---HHHHHHHHHHHHHHHHHHhhccC
Confidence 34444444444444444333332 34567777888888888887764
No 478
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=31.85 E-value=3.1e+02 Score=23.93 Aligned_cols=33 Identities=21% Similarity=0.279 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024834 118 VRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRG 153 (262)
Q Consensus 118 ~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrg 153 (262)
..++.+.+.|..++ ..|+++|..|...+..+..
T Consensus 85 d~~~~e~k~L~~~v---~~Le~e~r~L~~~~~~~~~ 117 (158)
T PF09744_consen 85 DQWRQERKDLQSQV---EQLEEENRQLELKLKNLSD 117 (158)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhhhh
Confidence 45566666666665 4566777666655544433
No 479
>PRK07737 fliD flagellar capping protein; Validated
Probab=31.61 E-value=2.1e+02 Score=28.78 Aligned_cols=47 Identities=13% Similarity=0.172 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhh
Q 024834 109 RTASLEDEVVRLRAVNQQLLKRLQ-GQAALEAEVARLKCLLVDIRGRI 155 (262)
Q Consensus 109 HleeLE~QV~qLraeNqqLl~rLq-~~a~LEaEn~rLRaqL~elrgri 155 (262)
++..|+.|++.|...-+++.+|+. .+.+||.-++.|.++-.-|.+.+
T Consensus 449 ~i~~l~~~i~~~~~rl~~~e~ry~~qf~ale~~~s~mnsq~s~L~~~l 496 (501)
T PRK07737 449 DLNQIETQIDRFQDRLKQIEDRYYKKFSAMEKAIQKANEQSMYLMNAL 496 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555555555555555555654 36778888888887777666654
No 480
>PF03194 LUC7: LUC7 N_terminus; InterPro: IPR004882 This family consists of several LUC7 protein homologues that are restricted to eukaryotes. LUC7 has been shown to be a U1 snRNA associated protein [] with a role in splice site recognition []. The entry contains human and mouse LUC7 like (LUC7L) proteins [] and human cisplatin resistance-associated overexpressed protein (CROP) [].
Probab=31.50 E-value=2e+02 Score=26.66 Aligned_cols=57 Identities=19% Similarity=0.260 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHh
Q 024834 97 EAVRKYREKKKARTASLEDEVVRLRAVNQQLLKR--LQGQAALEAEVARLKCLLVDIRG 153 (262)
Q Consensus 97 ESARRSR~RKQaHleeLE~QV~qLraeNqqLl~r--Lq~~a~LEaEn~rLRaqL~elrg 153 (262)
+.+...-..|.+.|.+|+.++..|-++-.+|-.. +..-..+-+++..|+.+..++..
T Consensus 112 ~~~~~~~~~~~~~i~~l~~~I~~ll~~aE~LGeeG~VdeA~~~~~~~e~Lk~ek~~le~ 170 (254)
T PF03194_consen 112 EQAKEADEEKAEKIDELDEKIGELLKEAEELGEEGDVDEAQKLMEEVEKLKEEKEELEK 170 (254)
T ss_pred ccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444445777888888888777776666554 33345677888888888888777
No 481
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=31.48 E-value=2.2e+02 Score=24.19 Aligned_cols=39 Identities=13% Similarity=0.210 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhhh
Q 024834 118 VRLRAVNQQLLKRLQG----QAALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 118 ~qLraeNqqLl~rLq~----~a~LEaEn~rLRaqL~elrgri~ 156 (262)
++|....+.|..+|.+ ...++.||..+|..+..+...++
T Consensus 64 khLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~ 106 (126)
T PF07889_consen 64 KHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVD 106 (126)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 4444444444444443 23455666666666666555443
No 482
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=31.29 E-value=3e+02 Score=22.60 Aligned_cols=64 Identities=23% Similarity=0.239 Sum_probs=0.0
Q ss_pred ccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024834 90 KRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 90 KRmlsNRESARRSR~RKQaHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrgri~ 156 (262)
+.+...++..+..-+.=..+.-.++.++..+|.+-..+...+ ..|+.+...+..++..+..+..
T Consensus 30 ~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~---~~L~~~~~~k~~~~~~l~~~~s 93 (150)
T PF07200_consen 30 QELQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEEL---KELESEYQEKEQQQDELSSNYS 93 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHccCC
No 483
>PF04350 PilO: Pilus assembly protein, PilO; PDB: 2RJZ_B.
Probab=31.15 E-value=29 Score=27.58 Aligned_cols=50 Identities=24% Similarity=0.268 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccc
Q 024834 117 VVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIEGEIGSFPYQK 166 (262)
Q Consensus 117 V~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrgri~~~iG~fp~qk 166 (262)
++.++++..+|..+++......+.+..++.++..+..++......+|...
T Consensus 1 ~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~lP~~~ 50 (144)
T PF04350_consen 1 LKTLQAQIQQLQQELAQLKEKVANLEELKKQLEQLEQQLEELLKKLPAEE 50 (144)
T ss_dssp -----------HHHHHHTGGG-SSHHHHHHHHHHHHHHHHHHHHCTTGGG
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCch
No 484
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=31.02 E-value=2.3e+02 Score=27.81 Aligned_cols=47 Identities=17% Similarity=0.291 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHh
Q 024834 107 KARTASLEDEVVRLRAVNQQLLKRLQG--------QAALEAEVARLKCLLVDIRG 153 (262)
Q Consensus 107 QaHleeLE~QV~qLraeNqqLl~rLq~--------~a~LEaEn~rLRaqL~elrg 153 (262)
.+..++|+++.++|++.+.....++.+ ...+..+..+|+.....|..
T Consensus 3 ~eEW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~ 57 (330)
T PF07851_consen 3 EEEWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKR 57 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 485
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=30.88 E-value=2.2e+02 Score=21.27 Aligned_cols=43 Identities=19% Similarity=0.270 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 107 KARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIR 152 (262)
Q Consensus 107 QaHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elr 152 (262)
+.+++.+++-|.+|-..-.+..+.| ..|+.++..|+.++.++.
T Consensus 10 E~~la~qe~~ie~Ln~~v~~Qq~~I---~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 10 EIKLAFQEDTIEELNDVVTEQQRQI---DRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhc
No 486
>PLN03217 transcription factor ATBS1; Provisional
Probab=30.88 E-value=1.1e+02 Score=25.09 Aligned_cols=54 Identities=19% Similarity=0.161 Sum_probs=0.0
Q ss_pred HHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 98 AVRKYREK--------KKARTASLEDEVVRLRAVNQQ------------LLKRLQGQAALEAEVARLKCLLVDI 151 (262)
Q Consensus 98 SARRSR~R--------KQaHleeLE~QV~qLraeNqq------------Ll~rLq~~a~LEaEn~rLRaqL~el 151 (262)
|-||||.| -..++.+|..++.+|--+... |.+...=...|-.||.-|-..|.+|
T Consensus 2 SsRRSrsrq~s~s~risddqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLSerLs~L 75 (93)
T PLN03217 2 SGRRSRSRQSSGTSRISEDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERLSEL 75 (93)
T ss_pred CcccccccccCCCCCCCHHHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 487
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=30.86 E-value=1.7e+02 Score=25.17 Aligned_cols=50 Identities=14% Similarity=0.209 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024834 107 KARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 107 QaHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrgri~ 156 (262)
++.++.+++++..|+.+....-+.|.....-...|..|+.++.+|.....
T Consensus 19 K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 19 KAKVDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNK 68 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
No 488
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=30.73 E-value=1.2e+02 Score=29.54 Aligned_cols=40 Identities=15% Similarity=0.248 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 110 TASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIR 152 (262)
Q Consensus 110 leeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elr 152 (262)
+.+..++...|+.+...|..+| ..+..++..||.+++..+
T Consensus 74 L~~sre~Nk~L~~Ev~~Lrqkl---~E~qGD~KlLR~~la~~r 113 (319)
T PF09789_consen 74 LSESREQNKKLKEEVEELRQKL---NEAQGDIKLLREKLARQR 113 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHhchHHHHHHHHHhhh
No 489
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=30.70 E-value=1.4e+02 Score=22.93 Aligned_cols=35 Identities=26% Similarity=0.274 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 109 RTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKC 146 (262)
Q Consensus 109 HleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRa 146 (262)
....+..++.+++.+..+|... +..|..|.+.|..
T Consensus 36 ~~~~~~~~l~~l~~~~~~l~~e---~~~L~lE~~~l~~ 70 (97)
T PF04999_consen 36 QSRQLFYELQQLEKEIDQLQEE---NERLRLEIATLSS 70 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhC
No 490
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=30.69 E-value=2.1e+02 Score=26.60 Aligned_cols=55 Identities=18% Similarity=0.159 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccc
Q 024834 104 EKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIEGEIGS 161 (262)
Q Consensus 104 ~RKQaHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrgri~~~iG~ 161 (262)
.+.++.+++...+++.++.+...|.+.. ..+..|..||-.+-..++.+|++..+.
T Consensus 161 ~kL~~el~~~~~~Le~~~~~~~al~Kq~---e~~~~EydrLlee~~~Lq~~i~~~~~k 215 (216)
T KOG1962|consen 161 EKLETELEKKQKKLEKAQKKVDALKKQS---EGLQDEYDRLLEEYSKLQEQIESGGKK 215 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHcccHHHHHHHHHHHHHHHHhccCCC
No 491
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=30.68 E-value=3e+02 Score=22.56 Aligned_cols=44 Identities=20% Similarity=0.245 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 96 REAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVA 142 (262)
Q Consensus 96 RESARRSR~RKQaHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~ 142 (262)
||+|+--+.=+|...+.|+.-.++|..+...-.+.| ..||..+.
T Consensus 57 rE~A~E~~Y~r~~EkEqL~~Lk~kl~~e~~~~~k~i---~~le~~I~ 100 (100)
T PF04568_consen 57 REAAQEEQYFRKKEKEQLKKLKEKLKEEIEHHRKEI---DELEKHIE 100 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhcC
No 492
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=30.61 E-value=2.9e+02 Score=22.37 Aligned_cols=48 Identities=21% Similarity=0.187 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024834 106 KKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 106 KQaHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrgri~ 156 (262)
|+-+=...+.+|.+|+.+|..|.+.+ ..|..++..-|.+...|-.-|+
T Consensus 40 KksYe~rwek~v~~L~~e~~~l~~E~---e~L~~~l~~e~~Ek~~Ll~ll~ 87 (87)
T PF12709_consen 40 KKSYEARWEKKVDELENENKALKREN---EQLKKKLDTEREEKQELLKLLE 87 (87)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhC
No 493
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=30.52 E-value=2.8e+02 Score=30.07 Aligned_cols=73 Identities=22% Similarity=0.336 Sum_probs=0.0
Q ss_pred hHHHhhccCcccHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024834 84 TEKKTKKRPLGNREAVRKYREKKKARTASLEDEV---VRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 84 ~d~RK~KRmlsNRESARRSR~RKQaHleeLE~QV---~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrgri~ 156 (262)
.+....-..+.+++++-+.|+--.+..++++.++ .+|.+.|..+..+|+....|+..+..++..++.++....
T Consensus 200 ~ql~~~~q~~~~~~~~l~e~~~~~qq~a~~~~ql~~~~ele~i~~~~~dqlqel~~l~~a~~q~~ee~~~~re~~~ 275 (716)
T KOG4593|consen 200 KQLQEENQKIQELQASLEERADHEQQNAELEQQLSLSEELEAINKNMKDQLQELEELERALSQLREELATLRENRE 275 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
No 494
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=30.48 E-value=2.9e+02 Score=26.17 Aligned_cols=50 Identities=18% Similarity=0.204 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024834 104 EKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 104 ~RKQaHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrgri~ 156 (262)
...++.|++.+.++..|+..-..|... +.....|...|..++.....||+
T Consensus 231 ~~~~~~L~~~~~~l~~l~~~l~~l~~~---~~~~~~e~~~l~~~~~~~~~kl~ 280 (344)
T PF12777_consen 231 EEAEEQLAEKQAELAELEEKLAALQKE---YEEAQKEKQELEEEIEETERKLE 280 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhc
No 495
>PF14645 Chibby: Chibby family
Probab=30.36 E-value=1.8e+02 Score=24.17 Aligned_cols=41 Identities=27% Similarity=0.279 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024834 113 LEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 113 LE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrgri~ 156 (262)
...++.+|+.+|++|.++ +..|.-++..|=..|++.+....
T Consensus 69 ~~~~~~~l~~~n~~L~EE---NN~Lklk~elLlDMLtettae~~ 109 (116)
T PF14645_consen 69 DGEENQRLRKENQQLEEE---NNLLKLKIELLLDMLTETTAEAH 109 (116)
T ss_pred chhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
No 496
>KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=30.32 E-value=1e+02 Score=31.53 Aligned_cols=58 Identities=22% Similarity=0.318 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccc
Q 024834 108 ARTASLEDEVVRLRAVNQQLL--KRLQGQAALEAEVARLKCLLVDIRGRIEGEIGSFPYQ 165 (262)
Q Consensus 108 aHleeLE~QV~qLraeNqqLl--~rLq~~a~LEaEn~rLRaqL~elrgri~~~iG~fp~q 165 (262)
+++.+...++.++-.+.+... .+|++....-.++..+++++.+|+.+++...+.||+.
T Consensus 414 ~~v~~fi~~av~i~~~~~~~~~~~~lkdf~~~~~~~~~~~~~v~~Lr~~Ve~fa~~fp~p 473 (477)
T KOG2467|consen 414 EKVADFIDRAVKIALEIQKEAGGKKLKDFKKFLSENKVMSEEVAELRKRVEEFAGQFPMP 473 (477)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccchHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCC
No 497
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=30.27 E-value=1.5e+02 Score=24.81 Aligned_cols=37 Identities=30% Similarity=0.395 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024834 115 DEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGR 154 (262)
Q Consensus 115 ~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrgr 154 (262)
.++.+|+..|++|.++ +-.|.-++++|...|++.+..
T Consensus 72 ~e~~rlkkk~~~LeEE---NNlLklKievLLDMLtettae 108 (108)
T cd07429 72 REVLRLKKKNQQLEEE---NNLLKLKIEVLLDMLAETTAE 108 (108)
T ss_pred hHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhcC
No 498
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=30.22 E-value=3.3e+02 Score=27.75 Aligned_cols=70 Identities=23% Similarity=0.152 Sum_probs=0.0
Q ss_pred HHhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024834 86 KKTKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQ----------QLLKRLQGQAALEAEVARLKCLLVDIRGRI 155 (262)
Q Consensus 86 ~RK~KRmlsNRESARRSR~RKQaHleeLE~QV~qLraeNq----------qLl~rLq~~a~LEaEn~rLRaqL~elrgri 155 (262)
.+++++.++ +...++ -.+=.+.+++||.+++.|.++.. .+..-..++..+++++..|-.+|.++....
T Consensus 555 ~~~~~~~~~-~~~~~~-~~~~e~~i~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 632 (635)
T PRK11147 555 VKRSSKKLS-YKLQRE-LEQLPQLLEDLEAEIEALQAQVADADFFSQPHEQTQKVLADLADAEQELEVAFERWEELEALK 632 (635)
T ss_pred hhhhhhhhc-hHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCchhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q ss_pred hh
Q 024834 156 EG 157 (262)
Q Consensus 156 ~~ 157 (262)
++
T Consensus 633 ~~ 634 (635)
T PRK11147 633 NG 634 (635)
T ss_pred cC
No 499
>smart00338 BRLZ basic region leucin zipper.
Probab=29.99 E-value=2.1e+02 Score=20.52 Aligned_cols=53 Identities=28% Similarity=0.364 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhh
Q 024834 104 EKKKARTASLEDEVVRLRAVNQQLLKRLQG-QAALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 104 ~RKQaHleeLE~QV~qLraeNqqLl~rLq~-~a~LEaEn~rLRaqL~elrgri~ 156 (262)
.|+..++..=..-..+-|.-..+.+..|.. ...|+++|..|+.++..|+..+.
T Consensus 4 ~k~~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~ 57 (65)
T smart00338 4 EKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELE 57 (65)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 500
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=29.99 E-value=2.8e+02 Score=22.31 Aligned_cols=53 Identities=19% Similarity=0.241 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhhhhhc
Q 024834 107 KARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVAR---LKCLLVDIRGRIEGEI 159 (262)
Q Consensus 107 QaHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~r---LRaqL~elrgri~~~i 159 (262)
++.+.+++.+--+|+..|++|...+.....-...... ++.++..+...+..+.
T Consensus 16 ~~~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~~~~~~~~l~~~~~~lk~~r 71 (106)
T PF05837_consen 16 QEKLSDVEKKRLRLKRRNQELAQELLELAEKQKSQREDEELSEKLEKLEKELKKSR 71 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHH
Done!