Query 024834
Match_columns 262
No_of_seqs 152 out of 335
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 15:12:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024834.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024834hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dh3_A Transcription factor CR 99.5 1.1E-14 3.8E-19 104.3 5.1 46 87-132 1-46 (55)
2 2wt7_A Proto-oncogene protein 99.5 1.1E-13 3.8E-18 100.7 7.8 61 86-149 1-61 (63)
3 1ci6_A Transcription factor AT 99.4 9.7E-13 3.3E-17 96.1 8.4 61 87-150 2-62 (63)
4 1t2k_D Cyclic-AMP-dependent tr 99.4 6.3E-13 2.2E-17 95.7 7.0 60 87-149 1-60 (61)
5 2dgc_A Protein (GCN4); basic d 99.4 4.1E-13 1.4E-17 98.4 5.3 46 94-149 16-61 (63)
6 1jnm_A Proto-oncogene C-JUN; B 99.4 5.8E-13 2E-17 96.4 5.0 60 87-149 1-60 (62)
7 1gd2_E Transcription factor PA 99.1 8.3E-11 2.8E-15 88.3 5.1 58 88-155 9-66 (70)
8 1hjb_A Ccaat/enhancer binding 99.0 3.8E-10 1.3E-14 87.8 7.3 68 86-156 14-81 (87)
9 1gu4_A CAAT/enhancer binding p 98.9 1.1E-09 3.6E-14 83.8 5.6 62 86-150 14-75 (78)
10 3a5t_A Transcription factor MA 98.3 6.1E-09 2.1E-13 83.9 -6.1 47 82-128 32-78 (107)
11 2wt7_B Transcription factor MA 98.1 4.1E-06 1.4E-10 65.7 6.3 65 82-149 22-86 (90)
12 2oqq_A Transcription factor HY 96.9 0.0025 8.4E-08 44.1 6.1 40 107-149 2-41 (42)
13 3m48_A General control protein 95.9 0.0068 2.3E-07 40.0 3.5 31 109-149 1-31 (33)
14 1deb_A APC protein, adenomatou 95.7 0.041 1.4E-06 39.6 7.1 46 110-155 5-54 (54)
15 2oxj_A Hybrid alpha/beta pepti 95.6 0.017 5.7E-07 38.4 4.4 30 109-148 2-31 (34)
16 1skn_P DNA-binding domain of S 95.5 0.002 6.8E-08 51.0 -0.4 32 84-115 59-90 (92)
17 1kd8_B GABH BLL, GCN4 acid bas 95.4 0.024 8.3E-07 38.0 4.8 32 109-150 2-33 (36)
18 3c3f_A Alpha/beta peptide with 95.3 0.024 8.2E-07 37.6 4.4 31 109-149 2-32 (34)
19 1kd8_A GABH AIV, GCN4 acid bas 95.2 0.023 7.9E-07 38.1 4.0 32 109-150 2-33 (36)
20 3c3g_A Alpha/beta peptide with 95.1 0.032 1.1E-06 36.8 4.4 31 109-149 1-31 (33)
21 1uo4_A General control protein 94.6 0.034 1.2E-06 36.9 3.7 31 109-149 2-32 (34)
22 2bni_A General control protein 94.4 0.038 1.3E-06 36.7 3.5 32 108-149 1-32 (34)
23 2wq1_A General control protein 94.3 0.066 2.3E-06 35.3 4.4 30 109-148 1-30 (33)
24 2hy6_A General control protein 94.3 0.06 2.1E-06 35.7 4.2 31 109-149 2-32 (34)
25 2jee_A YIIU; FTSZ, septum, coi 94.0 0.2 6.8E-06 38.6 7.3 51 111-161 23-77 (81)
26 2j5u_A MREC protein; bacterial 93.4 0.034 1.2E-06 49.2 2.4 41 109-149 20-60 (255)
27 3a2a_A Voltage-gated hydrogen 93.3 0.16 5.4E-06 37.1 5.3 37 114-150 10-50 (58)
28 3he5_A Synzip1; heterodimeric 92.6 0.35 1.2E-05 33.8 6.0 39 110-148 5-47 (49)
29 3vmx_A Voltage-gated hydrogen 92.5 0.39 1.3E-05 33.9 6.3 37 114-150 3-43 (48)
30 2lw1_A ABC transporter ATP-bin 91.6 0.9 3.1E-05 34.1 8.0 61 87-156 10-80 (89)
31 2r2v_A GCN4 leucine zipper; co 90.1 0.46 1.6E-05 31.5 4.4 31 109-149 2-32 (34)
32 3efg_A Protein SLYX homolog; x 89.6 1.5 5E-05 33.0 7.5 48 107-157 13-60 (78)
33 2xv5_A Lamin-A/C; structural p 89.4 1.8 6.2E-05 32.4 7.8 49 100-148 4-56 (74)
34 2oa5_A Hypothetical protein BQ 89.4 0.82 2.8E-05 37.1 6.3 51 108-158 8-75 (110)
35 3m91_A Proteasome-associated A 88.7 1.9 6.6E-05 30.4 7.1 41 108-151 9-49 (51)
36 3mq7_A Bone marrow stromal ant 88.3 2.3 8E-05 35.0 8.4 39 116-157 72-110 (121)
37 2c9l_Y EB1, zebra, BZLF1 trans 87.8 1 3.6E-05 33.0 5.4 46 91-153 5-50 (63)
38 3s4r_A Vimentin; alpha-helix, 87.0 2.9 9.8E-05 32.2 7.8 50 110-159 18-79 (93)
39 2yy0_A C-MYC-binding protein; 86.7 1.4 4.7E-05 31.1 5.3 31 115-148 19-49 (53)
40 3hnw_A Uncharacterized protein 86.5 3.4 0.00012 33.8 8.4 52 104-155 71-126 (138)
41 3oja_B Anopheles plasmodium-re 85.8 3.3 0.00011 38.7 9.0 43 115-157 537-583 (597)
42 1wt6_A Myotonin-protein kinase 85.3 3.2 0.00011 32.1 7.1 55 95-152 14-72 (81)
43 3s9g_A Protein hexim1; cyclin 85.1 1.4 4.8E-05 35.4 5.3 16 136-151 69-84 (104)
44 2oqq_A Transcription factor HY 84.2 1.7 5.7E-05 30.0 4.6 27 106-132 15-41 (42)
45 2dfs_A Myosin-5A; myosin-V, in 83.9 3.7 0.00013 43.1 9.3 23 134-156 1025-1047(1080)
46 1go4_E MAD1 (mitotic arrest de 83.6 5.5 0.00019 31.6 8.1 48 109-156 20-92 (100)
47 1fmh_A General control protein 83.6 2.3 7.9E-05 27.6 4.8 22 110-131 3-24 (33)
48 1gk6_A Vimentin; intermediate 82.9 5.5 0.00019 28.2 7.1 42 107-148 6-51 (59)
49 3m9b_A Proteasome-associated A 80.7 2.3 7.8E-05 38.6 5.5 44 107-153 53-96 (251)
50 1x8y_A Lamin A/C; structural p 80.2 15 0.0005 27.6 9.1 45 105-149 32-80 (86)
51 3o0z_A RHO-associated protein 77.7 18 0.00061 31.0 9.8 63 97-159 79-156 (168)
52 2v66_B Nuclear distribution pr 77.5 18 0.00063 29.0 9.3 50 109-158 36-89 (111)
53 3m91_A Proteasome-associated A 77.1 8.7 0.0003 27.0 6.5 40 114-156 8-47 (51)
54 1jcd_A Major outer membrane li 77.0 14 0.00047 26.1 7.5 46 108-156 4-49 (52)
55 1gd2_E Transcription factor PA 76.6 3 0.0001 30.9 4.2 36 107-145 35-70 (70)
56 3s9g_A Protein hexim1; cyclin 75.6 11 0.00037 30.3 7.4 24 107-130 64-87 (104)
57 3lay_A Zinc resistance-associa 75.4 11 0.00038 32.0 8.0 57 100-156 77-137 (175)
58 2kz5_A Transcription factor NF 75.3 0.096 3.3E-06 41.3 -4.4 23 85-107 64-86 (91)
59 1hjb_A Ccaat/enhancer binding 74.6 12 0.0004 28.8 7.1 22 135-156 46-67 (87)
60 1gk4_A Vimentin; intermediate 74.3 20 0.00067 26.7 8.2 43 106-148 31-77 (84)
61 2eqb_B RAB guanine nucleotide 74.3 17 0.00057 28.8 8.1 23 109-131 13-35 (97)
62 1am9_A Srebp-1A, protein (ster 74.1 3.9 0.00013 30.4 4.3 66 91-156 6-74 (82)
63 2v66_B Nuclear distribution pr 74.1 15 0.00051 29.5 7.9 49 108-156 3-59 (111)
64 4etp_A Kinesin-like protein KA 73.9 10 0.00034 35.5 8.0 46 109-157 18-63 (403)
65 2xdj_A Uncharacterized protein 73.5 16 0.00056 27.7 7.7 47 104-156 23-69 (83)
66 3a7p_A Autophagy protein 16; c 72.9 14 0.00049 31.2 7.9 14 23-36 23-36 (152)
67 1dip_A Delta-sleep-inducing pe 72.3 4 0.00014 31.3 4.0 30 115-147 15-44 (78)
68 3he5_B Synzip2; heterodimeric 72.2 16 0.00056 25.6 6.8 38 111-151 6-43 (52)
69 3w03_C DNA repair protein XRCC 71.9 8.5 0.00029 33.3 6.5 40 107-156 144-183 (184)
70 4h22_A Leucine-rich repeat fli 71.9 17 0.00057 29.1 7.7 70 84-156 7-82 (103)
71 2v71_A Nuclear distribution pr 71.6 24 0.00083 30.6 9.3 47 110-156 90-140 (189)
72 3a7p_A Autophagy protein 16; c 71.5 33 0.0011 29.0 9.8 14 136-149 121-134 (152)
73 3nmd_A CGMP dependent protein 71.3 20 0.0007 26.9 7.6 14 138-151 53-66 (72)
74 3u06_A Protein claret segregat 71.2 14 0.00047 34.8 8.3 44 110-156 19-62 (412)
75 1gk7_A Vimentin; intermediate 71.2 6.8 0.00023 26.1 4.5 34 116-149 4-37 (39)
76 2v71_A Nuclear distribution pr 70.9 20 0.0007 31.0 8.6 20 136-155 92-111 (189)
77 3e98_A GAF domain of unknown f 70.5 11 0.00038 33.1 7.1 33 111-143 68-100 (252)
78 1gmj_A ATPase inhibitor; coile 70.5 35 0.0012 26.4 9.1 57 93-152 22-78 (84)
79 1nkp_B MAX protein, MYC proto- 70.4 5.8 0.0002 29.1 4.4 18 138-155 60-77 (83)
80 1dip_A Delta-sleep-inducing pe 70.4 3.4 0.00011 31.7 3.2 24 107-130 21-44 (78)
81 2yy0_A C-MYC-binding protein; 69.6 6.4 0.00022 27.6 4.3 24 108-131 26-49 (53)
82 2k48_A Nucleoprotein; viral pr 69.6 19 0.00066 29.0 7.6 23 134-156 77-99 (107)
83 2xu6_A MDV1 coiled coil; prote 69.3 16 0.00055 27.6 6.7 46 108-156 21-66 (72)
84 1p9i_A Cortexillin I/GCN4 hybr 69.3 5.2 0.00018 25.7 3.4 21 135-155 9-29 (31)
85 3na7_A HP0958; flagellar bioge 69.2 22 0.00075 30.8 8.6 15 136-150 154-168 (256)
86 2xdj_A Uncharacterized protein 68.9 33 0.0011 26.0 8.5 19 135-153 30-48 (83)
87 1m1j_C Fibrinogen gamma chain; 68.3 21 0.00072 34.0 8.9 65 89-156 72-136 (409)
88 3mov_A Lamin-B1; LMNB1, B-type 68.0 26 0.00088 27.0 7.8 44 105-148 41-88 (95)
89 3i00_A HIP-I, huntingtin-inter 67.9 23 0.00079 28.5 7.8 49 103-154 35-83 (120)
90 1dh3_A Transcription factor CR 67.8 28 0.00096 24.2 7.4 22 134-155 31-52 (55)
91 3m9b_A Proteasome-associated A 67.1 8.6 0.00029 34.8 5.7 41 114-157 53-93 (251)
92 3swy_A Cyclic nucleotide-gated 67.0 29 0.00098 24.0 7.1 41 112-152 2-43 (46)
93 2jee_A YIIU; FTSZ, septum, coi 66.4 34 0.0011 26.2 8.1 17 110-126 29-45 (81)
94 3na7_A HP0958; flagellar bioge 66.1 46 0.0016 28.7 10.0 23 110-132 92-114 (256)
95 2wt7_A Proto-oncogene protein 66.0 32 0.0011 24.3 7.9 21 134-154 39-59 (63)
96 4ati_A MITF, microphthalmia-as 65.8 8.2 0.00028 30.6 4.7 30 88-117 24-53 (118)
97 1gu4_A CAAT/enhancer binding p 65.5 18 0.00062 27.2 6.3 22 135-156 46-67 (78)
98 1zme_C Proline utilization tra 65.3 6.5 0.00022 27.0 3.6 25 108-132 44-68 (70)
99 3oja_B Anopheles plasmodium-re 65.2 30 0.001 32.1 9.2 13 136-148 541-553 (597)
100 3ra3_B P2F; coiled coil domain 65.1 7.2 0.00025 24.5 3.4 24 118-144 3-26 (28)
101 3cve_A Homer protein homolog 1 65.0 28 0.00096 26.1 7.3 21 112-132 4-24 (72)
102 3nmd_A CGMP dependent protein 64.6 20 0.00069 27.0 6.4 22 136-157 44-65 (72)
103 3hnw_A Uncharacterized protein 64.6 53 0.0018 26.7 9.5 49 107-155 81-133 (138)
104 1wlq_A Geminin; coiled-coil; 2 63.7 34 0.0012 26.4 7.7 18 110-127 47-64 (83)
105 3k66_A Beta-amyloid-like prote 63.7 32 0.0011 31.0 8.7 55 97-151 26-90 (239)
106 1nkp_B MAX protein, MYC proto- 63.5 14 0.00049 27.0 5.4 15 136-150 65-79 (83)
107 3bas_A Myosin heavy chain, str 63.2 45 0.0015 25.0 8.7 50 107-156 34-87 (89)
108 4etp_A Kinesin-like protein KA 63.1 23 0.00077 33.1 7.9 23 109-131 4-26 (403)
109 2w6b_A RHO guanine nucleotide 63.0 18 0.00061 26.2 5.6 22 111-132 13-34 (56)
110 1t2k_D Cyclic-AMP-dependent tr 63.0 24 0.00083 24.6 6.3 21 134-154 38-58 (61)
111 1am9_A Srebp-1A, protein (ster 62.8 14 0.00046 27.4 5.2 28 107-134 49-76 (82)
112 3tnu_A Keratin, type I cytoske 62.8 21 0.00071 28.3 6.6 13 136-148 88-100 (131)
113 3pmr_A Amyloid-like protein 1; 62.7 8.3 0.00028 34.4 4.6 55 97-151 38-95 (219)
114 1nlw_A MAD protein, MAX dimeri 62.5 17 0.00056 27.1 5.6 20 108-127 47-66 (80)
115 2ic6_A Nucleocapsid protein; h 62.4 37 0.0013 25.9 7.6 48 109-156 6-69 (78)
116 3s4r_A Vimentin; alpha-helix, 62.3 50 0.0017 25.2 8.7 38 107-154 55-92 (93)
117 3cvf_A Homer-3, homer protein 62.2 15 0.00053 27.9 5.4 20 113-132 11-30 (79)
118 4emc_A Monopolin complex subun 62.2 12 0.00042 32.7 5.5 26 106-131 11-36 (190)
119 1go4_E MAD1 (mitotic arrest de 62.2 16 0.00054 29.0 5.7 22 109-130 13-34 (100)
120 3viq_B Mating-type switching p 62.1 41 0.0014 25.9 7.9 55 106-160 6-69 (85)
121 3ol1_A Vimentin; structural ge 61.9 21 0.00073 28.1 6.5 60 85-150 21-80 (119)
122 4ath_A MITF, microphthalmia-as 61.8 18 0.00062 27.8 5.8 27 107-133 48-74 (83)
123 2ic9_A Nucleocapsid protein; h 61.6 35 0.0012 27.0 7.6 23 134-156 47-69 (96)
124 2v4h_A NF-kappa-B essential mo 61.3 6.6 0.00023 31.8 3.4 15 109-123 63-77 (110)
125 2lw1_A ABC transporter ATP-bin 60.7 47 0.0016 24.6 7.9 51 106-156 27-87 (89)
126 3tnu_B Keratin, type II cytosk 60.5 43 0.0015 26.3 8.1 40 110-149 45-99 (129)
127 2j5u_A MREC protein; bacterial 60.3 4.8 0.00016 35.4 2.7 40 117-156 21-60 (255)
128 3tnu_B Keratin, type II cytosk 60.2 20 0.00069 28.3 6.1 21 108-128 82-102 (129)
129 3tnu_A Keratin, type I cytoske 60.2 44 0.0015 26.4 8.1 22 110-131 47-68 (131)
130 3uux_B Mitochondrial division 60.0 29 0.00098 31.4 7.7 48 107-157 176-223 (242)
131 1nkp_A C-MYC, MYC proto-oncoge 59.8 16 0.00056 27.5 5.3 15 137-151 71-85 (88)
132 3swf_A CGMP-gated cation chann 59.8 28 0.00097 26.3 6.5 47 111-157 3-50 (74)
133 4fi5_A Nucleoprotein; structur 59.4 38 0.0013 27.5 7.6 25 134-158 64-88 (113)
134 1gk4_A Vimentin; intermediate 59.3 42 0.0014 24.9 7.4 12 136-147 37-48 (84)
135 3qne_A Seryl-tRNA synthetase, 58.3 19 0.00064 35.0 6.6 62 102-163 41-109 (485)
136 2xzr_A Immunoglobulin-binding 57.9 72 0.0025 25.7 8.8 58 90-147 34-105 (114)
137 3he4_A Synzip6; heterodimeric 57.6 17 0.00057 25.9 4.6 35 108-145 17-51 (56)
138 3swk_A Vimentin; cytoskeleton, 55.8 21 0.0007 27.0 5.2 22 110-131 2-23 (86)
139 1joc_A EEA1, early endosomal a 55.8 18 0.00061 28.7 5.1 27 107-133 10-36 (125)
140 3tul_A Cell invasion protein S 55.7 13 0.00044 31.7 4.4 38 119-156 80-124 (158)
141 3mq7_A Bone marrow stromal ant 55.6 56 0.0019 26.8 8.0 18 136-153 75-92 (121)
142 3u1c_A Tropomyosin alpha-1 cha 55.5 68 0.0023 24.6 8.8 44 110-156 32-75 (101)
143 1x8y_A Lamin A/C; structural p 55.4 20 0.00068 26.9 5.0 25 107-131 27-51 (86)
144 3i00_A HIP-I, huntingtin-inter 54.4 63 0.0022 25.9 8.1 25 108-132 15-39 (120)
145 1lwu_C Fibrinogen gamma chain; 54.2 45 0.0015 30.8 8.2 44 109-155 13-56 (323)
146 1ci6_A Transcription factor AT 54.1 41 0.0014 23.9 6.3 18 135-152 40-57 (63)
147 1t3j_A Mitofusin 1; coiled coi 53.9 53 0.0018 25.8 7.4 39 111-156 50-88 (96)
148 2dq0_A Seryl-tRNA synthetase; 53.7 53 0.0018 31.2 8.8 61 103-163 40-107 (455)
149 1t3j_A Mitofusin 1; coiled coi 53.5 55 0.0019 25.7 7.4 25 99-123 45-69 (96)
150 2akf_A Coronin-1A; coiled coil 53.4 18 0.00061 23.4 3.8 22 111-132 2-23 (32)
151 1nkp_A C-MYC, MYC proto-oncoge 52.9 44 0.0015 25.1 6.6 18 138-155 65-82 (88)
152 1i84_S Smooth muscle myosin he 52.8 38 0.0013 35.5 8.2 21 111-131 881-901 (1184)
153 2ve7_C Kinetochore protein NUF 52.0 11 0.00036 33.4 3.5 48 85-132 118-172 (250)
154 1uii_A Geminin; human, DNA rep 51.2 82 0.0028 24.3 7.9 11 136-146 64-74 (83)
155 3oja_A Leucine-rich immune mol 51.2 59 0.002 29.7 8.5 12 118-129 445-456 (487)
156 3vp9_A General transcriptional 50.8 43 0.0015 26.2 6.4 16 136-151 72-87 (92)
157 3u59_A Tropomyosin beta chain; 50.8 79 0.0027 24.0 8.1 16 136-151 55-70 (101)
158 3kqg_A Langerin, C-type lectin 50.5 13 0.00045 29.2 3.5 13 137-149 21-33 (182)
159 3w03_C DNA repair protein XRCC 50.5 23 0.00078 30.6 5.2 39 95-133 139-177 (184)
160 1wle_A Seryl-tRNA synthetase; 50.5 92 0.0031 30.2 10.0 23 105-127 81-103 (501)
161 2efr_A General control protein 50.1 79 0.0027 26.5 8.4 21 109-129 71-91 (155)
162 1i84_S Smooth muscle myosin he 49.7 54 0.0019 34.3 8.8 13 109-121 886-898 (1184)
163 1wlq_A Geminin; coiled-coil; 2 49.3 33 0.0011 26.5 5.4 36 110-148 33-68 (83)
164 1zxa_A CGMP-dependent protein 48.8 26 0.0009 25.9 4.6 27 105-131 22-48 (67)
165 1j1d_C Troponin I, TNI; THIN f 48.8 45 0.0015 27.5 6.5 35 88-123 7-41 (133)
166 3iox_A AGI/II, PA; alpha helix 48.1 54 0.0019 32.4 8.0 23 108-130 34-56 (497)
167 2er8_A Regulatory protein Leu3 48.1 10 0.00035 26.2 2.3 21 107-127 48-68 (72)
168 2z5i_A TM, general control pro 47.8 56 0.0019 22.6 6.0 35 97-131 8-42 (52)
169 1ez3_A Syntaxin-1A; three heli 46.8 39 0.0013 25.5 5.6 20 109-128 20-39 (127)
170 1fzc_C Fibrin; blood coagulati 46.4 12 0.0004 34.7 3.0 45 109-156 5-49 (319)
171 3qh9_A Liprin-beta-2; coiled-c 46.1 95 0.0032 23.9 7.5 40 108-150 26-65 (81)
172 1a93_A Coiled coil, LZ, MYC pr 46.1 36 0.0012 22.3 4.4 25 108-132 7-31 (34)
173 2wuj_A Septum site-determining 46.1 28 0.00097 24.3 4.3 21 110-130 29-49 (57)
174 1jnm_A Proto-oncogene C-JUN; B 45.8 27 0.00093 24.4 4.2 21 135-155 32-52 (62)
175 1qvr_A CLPB protein; coiled co 45.5 43 0.0015 33.4 7.1 32 97-128 387-421 (854)
176 2wvr_A Geminin; DNA replicatio 45.4 90 0.0031 27.7 8.3 13 135-147 132-144 (209)
177 2wt7_B Transcription factor MA 45.3 63 0.0022 25.0 6.5 38 116-156 49-86 (90)
178 4ath_A MITF, microphthalmia-as 45.0 37 0.0013 26.1 5.1 40 116-155 40-81 (83)
179 3umh_A Amyloid beta A4 protein 44.8 42 0.0014 29.7 6.1 55 97-151 31-88 (211)
180 2w6a_A ARF GTPase-activating p 44.8 81 0.0028 23.2 6.6 37 110-146 22-62 (63)
181 3ghg_A Fibrinogen alpha chain; 44.6 51 0.0017 33.0 7.2 12 112-123 114-125 (562)
182 2ocy_A RAB guanine nucleotide 44.4 59 0.002 27.4 6.7 47 109-155 45-95 (154)
183 3ghg_A Fibrinogen alpha chain; 44.1 1.2E+02 0.0039 30.5 9.7 18 116-133 110-128 (562)
184 4dzn_A Coiled-coil peptide CC- 43.9 51 0.0017 21.3 4.8 10 136-145 20-29 (33)
185 3vem_A Helicase protein MOM1; 43.6 99 0.0034 25.1 7.7 52 97-154 49-101 (115)
186 3mq9_A Bone marrow stromal ant 43.2 91 0.0031 28.3 8.3 22 135-156 446-467 (471)
187 3u06_A Protein claret segregat 43.1 71 0.0024 30.0 7.8 36 111-149 6-41 (412)
188 3lss_A Seryl-tRNA synthetase; 42.6 91 0.0031 30.2 8.6 29 101-129 44-72 (484)
189 1nlw_A MAD protein, MAX dimeri 42.0 61 0.0021 24.0 5.8 16 139-154 61-76 (80)
190 2wvr_A Geminin; DNA replicatio 41.7 57 0.002 28.9 6.5 21 108-128 122-142 (209)
191 3pjs_K KCSA, voltage-gated pot 41.3 57 0.0019 26.2 6.0 30 103-132 133-162 (166)
192 3mq9_A Bone marrow stromal ant 41.0 1.1E+02 0.0036 27.9 8.4 10 134-143 431-440 (471)
193 1f5n_A Interferon-induced guan 40.8 1.2E+02 0.004 30.0 9.2 15 140-154 568-582 (592)
194 3kin_B Kinesin heavy chain; mo 40.7 41 0.0014 26.4 5.0 9 28-36 27-35 (117)
195 3p8c_F ABL interactor 2; actin 40.7 1.7E+02 0.0057 24.8 10.3 62 134-195 84-150 (159)
196 1m1j_B Fibrinogen beta chain; 40.2 1.6E+02 0.0054 28.6 9.8 53 104-156 131-192 (464)
197 1l8d_A DNA double-strand break 40.2 83 0.0028 23.5 6.5 13 141-153 73-85 (112)
198 1g6u_A Domain swapped dimer; d 39.1 84 0.0029 21.7 5.6 24 134-157 22-45 (48)
199 1p9i_A Cortexillin I/GCN4 hybr 38.8 50 0.0017 21.1 4.1 21 111-131 2-22 (31)
200 2fxo_A Myosin heavy chain, car 38.7 1.4E+02 0.0049 23.4 8.6 21 112-132 38-58 (129)
201 2fxo_A Myosin heavy chain, car 38.5 1.4E+02 0.0049 23.4 9.3 16 136-151 108-123 (129)
202 3o0z_A RHO-associated protein 38.4 1.6E+02 0.0053 25.2 8.5 38 112-149 38-79 (168)
203 2v4h_A NF-kappa-B essential mo 38.3 1.6E+02 0.0053 23.8 9.9 29 95-123 32-60 (110)
204 2eqb_B RAB guanine nucleotide 38.3 1.4E+02 0.0048 23.5 7.6 53 97-149 8-64 (97)
205 3qne_A Seryl-tRNA synthetase, 38.3 68 0.0023 31.1 7.0 16 139-154 78-93 (485)
206 3oja_A Leucine-rich immune mol 38.2 1.3E+02 0.0045 27.4 8.6 18 137-154 447-464 (487)
207 3ibp_A Chromosome partition pr 38.1 1.8E+02 0.0063 27.0 9.5 22 138-159 78-99 (302)
208 3thf_A Protein shroom; coiled- 37.9 1.2E+02 0.0041 26.5 7.8 43 102-144 13-55 (190)
209 2ocy_A RAB guanine nucleotide 37.3 1.8E+02 0.0063 24.3 9.0 24 134-157 110-133 (154)
210 2l5g_A GPS2 protein, G protein 37.1 42 0.0014 22.6 3.8 23 106-128 13-35 (38)
211 3he5_B Synzip2; heterodimeric 36.9 1.1E+02 0.0036 21.5 6.4 34 112-148 14-47 (52)
212 2xzr_A Immunoglobulin-binding 36.9 1.1E+02 0.0038 24.6 6.9 14 134-147 78-91 (114)
213 2dq3_A Seryl-tRNA synthetase; 36.8 46 0.0016 31.2 5.4 30 134-163 77-106 (425)
214 3vkg_A Dynein heavy chain, cyt 36.6 96 0.0033 36.8 8.9 30 98-127 2025-2054(3245)
215 1j1e_C Troponin I, TNI; THIN f 36.6 82 0.0028 27.2 6.5 37 88-125 7-43 (180)
216 1ytz_T Troponin T; muscle, THI 36.5 91 0.0031 24.7 6.3 26 136-162 67-92 (107)
217 1joc_A EEA1, early endosomal a 36.5 1.5E+02 0.0053 23.2 9.1 25 107-131 17-41 (125)
218 3t98_B Nucleoporin NUP58/NUP45 36.0 1.5E+02 0.005 22.8 8.1 51 108-158 26-91 (93)
219 2wuj_A Septum site-determining 35.9 50 0.0017 23.0 4.3 22 133-154 35-56 (57)
220 1wle_A Seryl-tRNA synthetase; 35.8 1.3E+02 0.0044 29.1 8.5 18 114-131 83-100 (501)
221 2rjz_A PILO protein; structura 35.7 21 0.00073 28.9 2.6 28 105-132 12-39 (147)
222 2dgc_A Protein (GCN4); basic d 35.7 1.2E+02 0.004 21.6 7.9 21 135-155 40-60 (63)
223 3eff_K Voltage-gated potassium 35.6 77 0.0026 24.4 5.8 27 105-131 108-134 (139)
224 1ic2_A Tropomyosin alpha chain 35.5 1.3E+02 0.0044 21.9 8.8 45 110-157 29-73 (81)
225 3sja_C Golgi to ER traffic pro 35.4 91 0.0031 23.0 5.7 46 114-159 5-59 (65)
226 1uii_A Geminin; human, DNA rep 35.0 65 0.0022 24.8 5.1 28 123-153 47-74 (83)
227 3iv1_A Tumor susceptibility ge 34.9 1.5E+02 0.005 22.5 8.4 52 102-153 12-74 (78)
228 2ve7_C Kinetochore protein NUF 34.8 28 0.00096 30.7 3.4 47 101-150 134-180 (250)
229 3q8t_A Beclin-1; autophagy, AT 34.8 1.5E+02 0.0051 22.6 8.2 17 114-130 10-26 (96)
230 3ghg_C Fibrinogen gamma chain; 34.7 2.1E+02 0.0071 27.4 9.6 67 87-156 70-136 (411)
231 1ses_A Seryl-tRNA synthetase; 34.4 2E+02 0.0068 26.9 9.3 28 136-163 75-102 (421)
232 3gp4_A Transcriptional regulat 34.2 80 0.0027 25.1 5.8 23 109-131 89-111 (142)
233 4i0x_B ESAT-6-like protein MAB 34.0 1.4E+02 0.0047 21.9 7.5 53 110-162 27-90 (103)
234 3kqg_A Langerin, C-type lectin 33.6 57 0.0019 25.5 4.8 11 137-147 28-38 (182)
235 2zxx_A Geminin; coiled-coil, c 33.6 1.6E+02 0.0054 22.4 7.2 25 105-129 38-62 (79)
236 1hlo_A Protein (transcription 33.1 39 0.0013 24.5 3.4 21 97-117 18-38 (80)
237 4b4t_K 26S protease regulatory 33.1 67 0.0023 30.3 5.9 43 108-153 49-91 (428)
238 1deb_A APC protein, adenomatou 32.9 70 0.0024 22.9 4.6 27 125-154 6-32 (54)
239 3pxg_A Negative regulator of g 32.5 90 0.0031 28.8 6.6 50 109-158 395-446 (468)
240 2p4v_A Transcription elongatio 32.4 1.7E+02 0.0058 23.8 7.6 49 108-156 9-70 (158)
241 3l4q_C Phosphatidylinositol 3- 32.2 1.6E+02 0.0055 25.0 7.6 49 106-157 101-149 (170)
242 3q0x_A Centriole protein; cent 32.2 1.4E+02 0.0047 26.5 7.4 39 108-156 178-216 (228)
243 1t6f_A Geminin; coiled-coil, c 31.7 65 0.0022 21.6 4.0 9 123-131 8-16 (37)
244 1gmj_A ATPase inhibitor; coile 31.6 1.8E+02 0.006 22.4 8.2 9 140-148 59-67 (84)
245 3htk_A Structural maintenance 31.0 1.2E+02 0.0042 20.4 8.3 47 106-155 10-56 (60)
246 1l8d_A DNA double-strand break 31.0 1.6E+02 0.0056 21.8 7.1 7 110-116 33-39 (112)
247 1jcd_A Major outer membrane li 30.4 1.4E+02 0.0048 20.9 6.1 29 116-147 5-33 (52)
248 3s84_A Apolipoprotein A-IV; fo 30.3 2.3E+02 0.008 25.0 8.7 9 140-148 89-97 (273)
249 3gpv_A Transcriptional regulat 30.3 55 0.0019 26.1 4.2 21 136-156 106-126 (148)
250 3q0x_A Centriole protein; cent 30.2 2.7E+02 0.0092 24.6 9.0 17 139-155 192-208 (228)
251 1cii_A Colicin IA; bacteriocin 30.2 2.1E+02 0.0071 28.7 8.9 91 56-155 315-414 (602)
252 3vem_A Helicase protein MOM1; 30.2 1.8E+02 0.0061 23.6 7.1 46 111-156 35-85 (115)
253 1j1d_B Troponin T, TNT; THIN f 30.1 1.1E+02 0.0038 24.1 5.9 26 136-162 67-92 (106)
254 3e98_A GAF domain of unknown f 29.8 1.6E+02 0.0056 25.6 7.5 35 110-144 74-108 (252)
255 3bas_A Myosin heavy chain, str 29.1 1.8E+02 0.0061 21.7 8.5 20 134-153 44-63 (89)
256 1ik9_A DNA repair protein XRCC 29.0 2.1E+02 0.0072 24.7 8.0 31 103-133 134-164 (213)
257 3q4f_C DNA repair protein XRCC 29.0 51 0.0017 28.8 4.0 38 93-130 146-183 (186)
258 3cve_A Homer protein homolog 1 28.9 1.8E+02 0.0061 21.6 7.0 25 108-132 7-31 (72)
259 3cvf_A Homer-3, homer protein 28.8 1.9E+02 0.0065 21.9 7.0 25 108-132 13-37 (79)
260 1s94_A S-syntaxin; three helix 28.7 71 0.0024 25.8 4.7 20 143-162 123-142 (180)
261 3jsv_C NF-kappa-B essential mo 28.4 22 0.00075 28.0 1.5 15 108-122 40-54 (94)
262 3vkg_A Dynein heavy chain, cyt 28.3 1.9E+02 0.0064 34.5 9.4 11 56-66 1865-1875(3245)
263 1grj_A GREA protein; transcrip 28.1 2.4E+02 0.0082 22.8 8.1 49 108-156 9-70 (158)
264 2ke4_A CDC42-interacting prote 28.0 1.7E+02 0.0059 22.5 6.5 27 106-132 20-46 (98)
265 1x79_B RAB GTPase binding effe 28.0 2.3E+02 0.0077 22.7 7.4 20 111-130 16-35 (112)
266 2e7s_A RAB guanine nucleotide 27.8 1.1E+02 0.0037 25.4 5.6 24 109-132 33-56 (135)
267 3iox_A AGI/II, PA; alpha helix 27.7 1.9E+02 0.0064 28.6 8.1 14 113-126 46-59 (497)
268 3fpp_A Macrolide-specific effl 27.6 2.8E+02 0.0095 23.7 8.5 16 139-154 128-143 (341)
269 3plt_A Sphingolipid long chain 27.5 1E+02 0.0034 27.6 5.8 23 87-109 93-116 (234)
270 3fx0_A NF-kappa-B essential mo 27.3 1.4E+02 0.0048 23.6 5.9 50 105-161 35-87 (96)
271 1lwu_C Fibrinogen gamma chain; 27.2 1.3E+02 0.0046 27.6 6.7 18 114-131 25-42 (323)
272 4ati_A MITF, microphthalmia-as 27.2 16 0.00055 28.9 0.5 68 84-151 33-110 (118)
273 3duz_A GP67, major envelope gl 27.0 3.8E+02 0.013 26.4 9.9 47 107-156 276-325 (487)
274 2lz1_A Nuclear factor erythroi 26.9 0.88 3E-05 35.8 -6.7 23 85-107 64-86 (90)
275 1ses_A Seryl-tRNA synthetase; 26.9 1.7E+02 0.0058 27.3 7.5 20 136-155 68-87 (421)
276 2ve7_A Kinetochore protein HEC 26.7 1.1E+02 0.0037 27.6 6.0 24 108-131 185-208 (315)
277 1vp7_A Exodeoxyribonuclease VI 26.6 77 0.0026 24.9 4.3 48 109-156 35-82 (100)
278 3mud_A DNA repair protein XRCC 26.6 1.1E+02 0.0038 26.3 5.7 40 92-131 118-165 (175)
279 2e7s_A RAB guanine nucleotide 26.5 27 0.00091 29.0 1.7 13 137-149 44-56 (135)
280 2zxx_A Geminin; coiled-coil, c 26.4 1.9E+02 0.0064 22.0 6.3 34 116-152 35-68 (79)
281 1r8e_A Multidrug-efflux transp 26.0 1.4E+02 0.0048 24.9 6.2 8 89-96 69-76 (278)
282 4dzo_A Mitotic spindle assembl 25.9 1.7E+02 0.0057 23.4 6.3 40 108-153 4-43 (123)
283 1q08_A Zn(II)-responsive regul 25.9 92 0.0032 22.4 4.4 21 136-156 50-70 (99)
284 3fav_B ESAT-6, 6 kDa early sec 25.9 1.7E+02 0.0059 20.4 8.2 29 134-162 54-82 (94)
285 4b4t_L 26S protease subunit RP 25.5 41 0.0014 31.9 3.0 22 109-130 66-87 (437)
286 1rtm_1 Mannose-binding protein 25.5 83 0.0028 23.8 4.3 25 107-131 3-27 (149)
287 3rrk_A V-type ATPase 116 kDa s 25.5 1.7E+02 0.0058 25.7 6.9 12 136-147 117-128 (357)
288 1gk7_A Vimentin; intermediate 25.4 91 0.0031 20.5 3.9 24 109-132 14-37 (39)
289 4ani_A Protein GRPE; chaperone 24.8 2.5E+02 0.0085 24.5 7.7 28 105-132 70-97 (213)
290 1lrz_A FEMA, factor essential 24.4 2.2E+02 0.0075 25.8 7.6 25 108-132 247-271 (426)
291 2oto_A M protein; helical coil 24.2 2.8E+02 0.0094 22.2 8.6 24 110-133 52-75 (155)
292 1fxk_C Protein (prefoldin); ar 24.0 1.9E+02 0.0065 22.1 6.2 22 110-131 3-24 (133)
293 2dq0_A Seryl-tRNA synthetase; 24.0 1.5E+02 0.0052 28.1 6.6 21 136-156 73-93 (455)
294 3sjb_C Golgi to ER traffic pro 23.9 1.8E+02 0.0061 22.8 5.9 24 135-158 59-82 (93)
295 4a25_A DPS, ferritin DPS famil 23.8 2.9E+02 0.0099 22.3 7.9 51 113-164 25-88 (169)
296 3h6p_C ESAT-6-like protein ESX 23.6 1.6E+02 0.0055 21.0 5.4 26 135-160 56-81 (96)
297 3lvh_D LCB, clathrin light cha 23.5 1E+02 0.0034 27.3 4.9 34 91-124 94-127 (205)
298 4dk0_A Putative MACA; alpha-ha 23.3 2.1E+02 0.0073 24.7 7.0 10 72-81 51-60 (369)
299 1zs3_A Lactococcus lactis Mg13 23.2 3.2E+02 0.011 22.7 7.9 60 104-164 14-87 (182)
300 2w83_C C-JUN-amino-terminal ki 23.2 1.5E+02 0.0053 22.5 5.3 43 111-156 33-75 (77)
301 2zvf_A Alanyl-tRNA synthetase; 23.1 1.4E+02 0.0046 23.6 5.3 17 135-151 42-58 (171)
302 2qyw_A Vesicle transport throu 23.1 2.5E+02 0.0085 21.3 8.4 29 104-132 45-73 (102)
303 2wg5_A General control protein 23.0 98 0.0033 23.9 4.3 9 143-151 25-33 (109)
304 2zqm_A Prefoldin beta subunit 22.9 1.8E+02 0.0063 21.4 5.8 17 137-153 82-98 (117)
305 1zxa_A CGMP-dependent protein 22.8 1.2E+02 0.0039 22.4 4.4 19 137-155 37-55 (67)
306 2c5k_T Syntaxin TLG1, T-snare 22.0 2.6E+02 0.009 21.2 6.7 50 108-157 36-93 (95)
307 3l4f_A RHO guanine nucleotide 21.7 2.4E+02 0.0082 20.6 5.9 21 112-132 11-31 (61)
308 1hwt_C Protein (heme activator 21.6 54 0.0018 22.8 2.3 22 106-127 56-77 (81)
309 1a93_B MAX protein, coiled coi 21.5 1.4E+02 0.0047 19.6 4.1 16 115-130 14-29 (34)
310 3rrk_A V-type ATPase 116 kDa s 21.5 3.5E+02 0.012 23.7 8.1 27 104-130 229-255 (357)
311 1m1j_C Fibrinogen gamma chain; 21.4 4.3E+02 0.015 25.0 9.1 24 108-131 41-64 (409)
312 2b5u_A Colicin E3; high resolu 21.2 3.9E+02 0.013 26.7 9.0 10 12-22 218-228 (551)
313 1zuj_A Hypothetical protein ll 21.1 3.6E+02 0.012 22.4 7.9 59 105-164 14-86 (179)
314 3gwk_C SAG1039, putative uncha 20.9 2.2E+02 0.0074 20.1 5.6 19 111-129 25-43 (98)
315 3jsv_C NF-kappa-B essential mo 20.8 3.1E+02 0.01 21.5 8.9 30 95-124 10-39 (94)
316 4g2k_A General control protein 20.8 1.6E+02 0.0054 24.3 5.2 40 107-156 13-52 (125)
317 2yko_A LINE-1 ORF1P; RNA-bindi 20.7 2.2E+02 0.0076 25.4 6.6 46 109-157 7-52 (233)
318 4a9a_A Ribosome-interacting GT 20.6 53 0.0018 30.4 2.7 44 108-155 6-49 (376)
319 2f23_A Anti-cleavage anti-GREA 20.6 3.3E+02 0.011 21.8 8.1 48 109-156 11-70 (156)
320 3r2p_A Apolipoprotein A-I; amp 20.4 3.5E+02 0.012 22.0 7.6 19 102-120 83-101 (185)
321 2oto_A M protein; helical coil 20.3 3.3E+02 0.011 21.7 7.4 16 113-128 27-42 (155)
322 2vz4_A Tipal, HTH-type transcr 20.2 1.1E+02 0.0039 22.7 4.0 21 135-155 84-104 (108)
323 3rvy_A ION transport protein; 20.1 22 0.00075 30.3 0.0 25 108-132 256-280 (285)
324 2yo3_A General control protein 20.1 1.3E+02 0.0045 27.5 5.1 48 100-147 208-259 (268)
325 3hhm_B NISH2 P85alpha; PI3KCA, 20.1 1.8E+02 0.0062 27.0 6.2 46 112-157 209-258 (373)
No 1
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=99.51 E-value=1.1e-14 Score=104.31 Aligned_cols=46 Identities=41% Similarity=0.533 Sum_probs=42.2
Q ss_pred HhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 87 KTKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQ 132 (262)
Q Consensus 87 RK~KRmlsNRESARRSR~RKQaHleeLE~QV~qLraeNqqLl~rLq 132 (262)
|+.+||++|||||++||+|||+|+++||.+|.+|+.+|..|..++.
T Consensus 1 kr~rR~~~NResA~rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~ 46 (55)
T 1dh3_A 1 KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELK 46 (55)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999988876653
No 2
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=99.47 E-value=1.1e-13 Score=100.67 Aligned_cols=61 Identities=26% Similarity=0.352 Sum_probs=55.0
Q ss_pred HHhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 86 KKTKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLV 149 (262)
Q Consensus 86 ~RK~KRmlsNRESARRSR~RKQaHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~ 149 (262)
+|+++|+.+||+||+|||+||++++++|+.+|..|..+|..|..+| ..|..|+..|+..|.
T Consensus 1 Ekr~rrrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei---~~L~~e~~~Lk~~l~ 61 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEI---ANLLKEKEKLEFILA 61 (63)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999999999998886 467888888887664
No 3
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=99.40 E-value=9.7e-13 Score=96.10 Aligned_cols=61 Identities=33% Similarity=0.442 Sum_probs=52.5
Q ss_pred HhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 87 KTKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVD 150 (262)
Q Consensus 87 RK~KRmlsNRESARRSR~RKQaHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~e 150 (262)
|+.+|+.+||.||+|||+||++++++|+.+|..|+.+|..|..++ ..|+.|+..||..|.+
T Consensus 2 k~~rKr~rNr~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i---~~L~~E~~~Lk~ll~e 62 (63)
T 1ci6_A 2 KKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERA---DSLAKEIQYLKDLIEE 62 (63)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred chHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhh
Confidence 688999999999999999999999999999999999999999997 6789999999998876
No 4
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=99.39 E-value=6.3e-13 Score=95.74 Aligned_cols=60 Identities=38% Similarity=0.447 Sum_probs=54.9
Q ss_pred HhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 87 KTKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLV 149 (262)
Q Consensus 87 RK~KRmlsNRESARRSR~RKQaHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~ 149 (262)
|+++|+.+||+||++||+||++++++|+.+|..|..+|..|..++ ..|+.|+..|+.+|+
T Consensus 1 kR~~r~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i---~~L~~e~~~Lk~~ll 60 (61)
T 1t2k_D 1 KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEV---TLLRNEVAQLKQLLL 60 (61)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHT
T ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhc
Confidence 578999999999999999999999999999999999999998886 568888888888764
No 5
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=99.37 E-value=4.1e-13 Score=98.43 Aligned_cols=46 Identities=48% Similarity=0.541 Sum_probs=38.7
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 94 GNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLV 149 (262)
Q Consensus 94 sNRESARRSR~RKQaHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~ 149 (262)
.||+||||||+||++|+++||.+|.+|+.+|..| ++|+..||.++.
T Consensus 16 rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L----------~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 16 RNTEAARRSRARKLQRMKQLEDKVEELLSKNYHL----------ENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHC--
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHh
Confidence 3999999999999999999999999999999766 556677776653
No 6
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=99.36 E-value=5.8e-13 Score=96.37 Aligned_cols=60 Identities=35% Similarity=0.462 Sum_probs=50.1
Q ss_pred HhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 87 KTKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLV 149 (262)
Q Consensus 87 RK~KRmlsNRESARRSR~RKQaHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~ 149 (262)
|+.+|+.+||+||++||+||++++++||.+|..|..+|..|..++ ..|+.|+..|+.+|.
T Consensus 1 K~errr~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v---~~L~~e~~~Lk~~l~ 60 (62)
T 1jnm_A 1 KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTA---NMLREQVAQLKQKVM 60 (62)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHTTC----
T ss_pred ChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 356777889999999999999999999999999999999998886 567888888887764
No 7
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=99.09 E-value=8.3e-11 Score=88.35 Aligned_cols=58 Identities=26% Similarity=0.419 Sum_probs=46.9
Q ss_pred hhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024834 88 TKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRI 155 (262)
Q Consensus 88 K~KRmlsNRESARRSR~RKQaHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrgri 155 (262)
..||+.+||+|+|.+|+||++||.+||.+|..|+.+++.| ..||..||.++..|+..+
T Consensus 9 ~~kR~~qNR~AQRafReRK~~~i~~LE~~v~~le~~~~~l----------~~en~~Lr~~i~~L~~El 66 (70)
T 1gd2_E 9 SSKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSST----------TLENDQLRQKVRQLEEEL 66 (70)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHTTHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHH
Confidence 4688899999999999999999999999999999988765 455555665555555443
No 8
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=99.05 E-value=3.8e-10 Score=87.83 Aligned_cols=68 Identities=31% Similarity=0.393 Sum_probs=57.3
Q ss_pred HHhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024834 86 KKTKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 86 ~RK~KRmlsNRESARRSR~RKQaHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrgri~ 156 (262)
.+...|+..|.+||||||+++++...+++.+|..|+.+|.+|..+| ..|+.|+..||..+..+.+.|-
T Consensus 14 ~~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v---~~L~~E~~~Lr~ll~~~p~~~~ 81 (87)
T 1hjb_A 14 DEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKV---EQLSRELSTLRNLFKQLPEPLL 81 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHCcHHHh
Confidence 4466678899999999999999999999999999999999999997 5799999999999998877644
No 9
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=98.93 E-value=1.1e-09 Score=83.75 Aligned_cols=62 Identities=34% Similarity=0.430 Sum_probs=53.4
Q ss_pred HHhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 86 KKTKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVD 150 (262)
Q Consensus 86 ~RK~KRmlsNRESARRSR~RKQaHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~e 150 (262)
..-..|+..|.+||+|||+++++...+++.+|..|+.+|..|..+| ..|+.|+..||..|..
T Consensus 14 ~~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v---~~L~~E~~~Lr~ll~q 75 (78)
T 1gu4_A 14 DEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKV---EQLSRELSTLRNLFKQ 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHTTTC-
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 3455667899999999999999999999999999999999999887 5688888888876543
No 10
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=98.32 E-value=6.1e-09 Score=83.88 Aligned_cols=47 Identities=26% Similarity=0.334 Sum_probs=40.5
Q ss_pred cchHHHhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 82 ESTEKKTKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLL 128 (262)
Q Consensus 82 e~~d~RK~KRmlsNRESARRSR~RKQaHleeLE~QV~qLraeNqqLl 128 (262)
+-.+.|.+||.++||.||+++|.||++..++||.++..|..+..+|.
T Consensus 32 e~~~lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~~e~e~L~ 78 (107)
T 3a5t_A 32 EIIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLA 78 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTTTTTT
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567999999999999999999999999999999888877665553
No 11
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=98.13 E-value=4.1e-06 Score=65.74 Aligned_cols=65 Identities=28% Similarity=0.273 Sum_probs=52.6
Q ss_pred cchHHHhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 82 ESTEKKTKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLV 149 (262)
Q Consensus 82 e~~d~RK~KRmlsNRESARRSR~RKQaHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~ 149 (262)
+-...|.+||.+.||-+|.-+|.||.....+||.++..|..+.++|...+ ..+..|...++..+.
T Consensus 22 ev~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~---~~~~~e~d~~k~k~~ 86 (90)
T 2wt7_B 22 EVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEV---SRLARERDAYKVKSE 86 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 34578999999999999999999999999999999999999988876654 444555555555544
No 12
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=96.90 E-value=0.0025 Score=44.11 Aligned_cols=40 Identities=33% Similarity=0.406 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 107 KARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLV 149 (262)
Q Consensus 107 QaHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~ 149 (262)
|+++.+||.+++.|...|.+|..|+ .-|+.||.-||+.+.
T Consensus 2 KaYl~eLE~r~k~le~~naeLEerv---stLq~EN~mLRqvl~ 41 (42)
T 2oqq_A 2 SAYLSELENRVKDLENKNSELEERL---STLQNENQMLRHILK 41 (42)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHH---HHHHHhHHHHHHHhc
Confidence 5789999999999999999999997 678999999998763
No 13
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=95.94 E-value=0.0068 Score=40.03 Aligned_cols=31 Identities=52% Similarity=0.521 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 109 RTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLV 149 (262)
Q Consensus 109 HleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~ 149 (262)
+|..||++|..|-.+|.. |+.||+|||..|.
T Consensus 1 RM~QLE~kVEeLl~~n~~----------Le~EV~RLk~Ll~ 31 (33)
T 3m48_A 1 RMAQLEAKVEELLSKNWN----------LENEVARLKKLVG 31 (33)
T ss_dssp --CHHHHHHHHHHHHHHH----------HHHHHHHHHHHTT
T ss_pred CccHHHHHHHHHHHHhHH----------HHHHHHHHHHHhh
Confidence 467899999999888855 4889999998753
No 14
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=95.70 E-value=0.041 Score=39.62 Aligned_cols=46 Identities=28% Similarity=0.401 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhh
Q 024834 110 TASLEDEVVRLRAVNQQLLKRLQG----QAALEAEVARLKCLLVDIRGRI 155 (262)
Q Consensus 110 leeLE~QV~qLraeNqqLl~rLq~----~a~LEaEn~rLRaqL~elrgri 155 (262)
-+.|-.||+-|+.||..|.++|++ ...||.|..-+|..+..+.++|
T Consensus 5 YdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~lq~~i 54 (54)
T 1deb_A 5 YDQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQLQGSI 54 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHcccC
Confidence 478999999999999999999985 4579999999999888887754
No 15
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=95.62 E-value=0.017 Score=38.40 Aligned_cols=30 Identities=47% Similarity=0.583 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 109 RTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLL 148 (262)
Q Consensus 109 HleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL 148 (262)
+|..||++|..|-.+|+. |+.||.+||..|
T Consensus 2 RMnQLE~kVEeLl~~n~~----------Le~eV~rLk~ll 31 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXH----------LEXEVXRLKXLV 31 (34)
T ss_dssp CHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhh----------HHHHHHHHHHHH
Confidence 578999999999888855 488999999876
No 16
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1
Probab=95.50 E-value=0.002 Score=50.95 Aligned_cols=32 Identities=19% Similarity=0.287 Sum_probs=27.6
Q ss_pred hHHHhhccCcccHHHHHHHHHHHHHHHHHHHH
Q 024834 84 TEKKTKKRPLGNREAVRKYREKKKARTASLED 115 (262)
Q Consensus 84 ~d~RK~KRmlsNRESARRSR~RKQaHleeLE~ 115 (262)
...|+.||+..||.||+++|.||.+.+++|+.
T Consensus 59 ~~ir~~RRR~KNr~AA~~CRkrK~~~~d~l~~ 90 (92)
T 1skn_P 59 QLIRKIRRRGKNKVAARTCRQRRTDRHDKMSH 90 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhc
Confidence 45789999999999999999999999988764
No 17
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=95.44 E-value=0.024 Score=38.03 Aligned_cols=32 Identities=28% Similarity=0.322 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 109 RTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVD 150 (262)
Q Consensus 109 HleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~e 150 (262)
+|..||++|++|-.+|.. |+.||+|||..+.+
T Consensus 2 RMnQLE~KVEeLl~~~~~----------Le~eV~RLk~ll~~ 33 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWH----------LKNKVARLKKKNAE 33 (36)
T ss_dssp CHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHH----------HHHHHHHHHHHhcc
Confidence 578899999998777754 58899999988764
No 18
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=95.33 E-value=0.024 Score=37.61 Aligned_cols=31 Identities=26% Similarity=0.315 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 109 RTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLV 149 (262)
Q Consensus 109 HleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~ 149 (262)
+|..||++|+.|-.+|. .|+.||+|||..|.
T Consensus 2 RMnQLEdKVEeLl~~~~----------~Le~EV~RLk~ll~ 32 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLY----------HXENEXARIXKLLX 32 (34)
T ss_dssp CHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHhhhh----------HHHHHHHHHHHHHh
Confidence 57889999998877774 45899999998763
No 19
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=95.17 E-value=0.023 Score=38.13 Aligned_cols=32 Identities=34% Similarity=0.340 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 109 RTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVD 150 (262)
Q Consensus 109 HleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~e 150 (262)
+|..||++|..|-.+|.. ||.||+|||..+.+
T Consensus 2 RMnQLE~kVEeLl~~~~~----------Le~EV~RL~~ll~~ 33 (36)
T 1kd8_A 2 EVKQLEAEVEEIESEVWH----------LENEVARLEKENAE 33 (36)
T ss_dssp CCHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHH----------HHHHHHHHHHHhcc
Confidence 467899999988777754 58899999988765
No 20
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=95.07 E-value=0.032 Score=36.81 Aligned_cols=31 Identities=26% Similarity=0.434 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 109 RTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLV 149 (262)
Q Consensus 109 HleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~ 149 (262)
+|..||++|+.|-.+|. .||.||+|||..|.
T Consensus 1 RMnQLEdKvEeLl~~~~----------~Le~EV~RLk~lL~ 31 (33)
T 3c3g_A 1 RMKXIEXKLXEIXSKXY----------HXENXLARIKXLLX 31 (33)
T ss_dssp CHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHC
T ss_pred CccHHHHHHHHHHHHhh----------HHHHHHHHHHHHHc
Confidence 36789999998877774 45899999998763
No 21
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=94.65 E-value=0.034 Score=36.90 Aligned_cols=31 Identities=32% Similarity=0.350 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 109 RTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLV 149 (262)
Q Consensus 109 HleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~ 149 (262)
+|..||++|+.|-.+|. .||.||+|||..|.
T Consensus 2 RM~QLEdKVEeLl~~n~----------~Le~EV~RLk~LL~ 32 (34)
T 1uo4_A 2 RMKQIEDKGEEILSKLY----------HIENELARIKKLLG 32 (34)
T ss_dssp -CHHHHHHHHHHHHHHH----------HHHHHHHHHHHHTT
T ss_pred chhHHHHHHHHHHHhhH----------HHHHHHHHHHHHHc
Confidence 56789999999877774 45889999998753
No 22
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=94.38 E-value=0.038 Score=36.67 Aligned_cols=32 Identities=28% Similarity=0.403 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 108 ARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLV 149 (262)
Q Consensus 108 aHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~ 149 (262)
++|..||++|..|-.+|+. |+.||+|||..|.
T Consensus 1 eRMnQLEdKvEeLl~~~~~----------L~~EV~RLk~lL~ 32 (34)
T 2bni_A 1 XRMKQIEDKLEEILSKGHH----------ICNELARIKKLLG 32 (34)
T ss_dssp --CHHHHHHHHHHHHHHHH----------HHHHHHHHHHHC-
T ss_pred CchhHHHHHHHHHHHccHH----------HHHHHHHHHHHhc
Confidence 3578899999998777744 5889999998753
No 23
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=94.28 E-value=0.066 Score=35.32 Aligned_cols=30 Identities=27% Similarity=0.251 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 109 RTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLL 148 (262)
Q Consensus 109 HleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL 148 (262)
+|..||++|++|-.+|.. |+.||+|||..|
T Consensus 1 RMnQLEdKVEell~~~~~----------le~EV~Rl~~ll 30 (33)
T 2wq1_A 1 RMKQLEDKIEENTSKIYH----------NTNEIARNTKLV 30 (33)
T ss_dssp CHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHhhHH----------HHHHHHHHHHHh
Confidence 367899999988777644 588999999865
No 24
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=94.27 E-value=0.06 Score=35.72 Aligned_cols=31 Identities=32% Similarity=0.359 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 109 RTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLV 149 (262)
Q Consensus 109 HleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~ 149 (262)
+|..||++|++|-.+|.. |+.||+|||..+.
T Consensus 2 RMnQLEdkVEeLl~~~~~----------Le~eV~RL~~ll~ 32 (34)
T 2hy6_A 2 KVKQLADAVEELASANYH----------LANAVARLAKAVG 32 (34)
T ss_dssp -CHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHH----------HHHHHHHHHHHhc
Confidence 577899999999777754 5889999998763
No 25
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=93.98 E-value=0.2 Score=38.63 Aligned_cols=51 Identities=25% Similarity=0.321 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhhhhhccc
Q 024834 111 ASLEDEVVRLRAVNQQLLKRLQG----QAALEAEVARLKCLLVDIRGRIEGEIGS 161 (262)
Q Consensus 111 eeLE~QV~qLraeNqqLl~rLq~----~a~LEaEn~rLRaqL~elrgri~~~iG~ 161 (262)
.-|.-+|..|+.+|..|....+. ...|+.||.+|+.+......||++-+|-
T Consensus 23 ~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk 77 (81)
T 2jee_A 23 TLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGR 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555777788888777777653 4569999999999999999999987764
No 26
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=93.35 E-value=0.034 Score=49.17 Aligned_cols=41 Identities=22% Similarity=0.071 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 109 RTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLV 149 (262)
Q Consensus 109 HleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~ 149 (262)
.+..|.+|.++|+++|.+|..++.....+++||++||.+|.
T Consensus 20 ~~~~l~~eN~~Lk~e~~~l~~~~~~~~~l~~En~rLr~lL~ 60 (255)
T 2j5u_A 20 DLKNTYTENQHLKERLEELAQLESEVADLKKENKDLKESLD 60 (255)
T ss_dssp ------CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34567788889999999999998888999999999999755
No 27
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=93.28 E-value=0.16 Score=37.13 Aligned_cols=37 Identities=35% Similarity=0.504 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Q 024834 114 EDEVVRLRAVNQQLLKRLQG----QAALEAEVARLKCLLVD 150 (262)
Q Consensus 114 E~QV~qLraeNqqLl~rLq~----~a~LEaEn~rLRaqL~e 150 (262)
|.||.+|+..|-+|..++++ ....|.|+.||+..|.+
T Consensus 10 e~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~LLkq 50 (58)
T 3a2a_A 10 ERQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNKLLRQ 50 (58)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66888999999999999874 56788999999988754
No 28
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=92.56 E-value=0.35 Score=33.81 Aligned_cols=39 Identities=38% Similarity=0.414 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Q 024834 110 TASLEDEVVRLRAVNQQLLKRLQG----QAALEAEVARLKCLL 148 (262)
Q Consensus 110 leeLE~QV~qLraeNqqLl~rLq~----~a~LEaEn~rLRaqL 148 (262)
++.||.+|+.|+.+|..|.++--+ .+-||.|++.||..+
T Consensus 5 vaqlenevaslenenetlkkknlhkkdliaylekeianlrkki 47 (49)
T 3he5_A 5 VAQLENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKKI 47 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHHh
Confidence 578999999999999999887321 456777777777654
No 29
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=92.46 E-value=0.39 Score=33.95 Aligned_cols=37 Identities=35% Similarity=0.533 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Q 024834 114 EDEVVRLRAVNQQLLKRLQG----QAALEAEVARLKCLLVD 150 (262)
Q Consensus 114 E~QV~qLraeNqqLl~rLq~----~a~LEaEn~rLRaqL~e 150 (262)
|.++.+|+.-|.+|..++++ ...+|.|+.||+..|.+
T Consensus 3 eq~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LLkq 43 (48)
T 3vmx_A 3 ERQILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKLLKQ 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 56889999999999999874 66889999999987753
No 30
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=91.63 E-value=0.9 Score=34.15 Aligned_cols=61 Identities=18% Similarity=0.128 Sum_probs=42.3
Q ss_pred HhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHhhhh
Q 024834 87 KTKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQG----------QAALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 87 RK~KRmlsNRESARRSR~RKQaHleeLE~QV~qLraeNqqLl~rLq~----------~a~LEaEn~rLRaqL~elrgri~ 156 (262)
||.++++|-. -|+.++.|+.++.+|.++...|...|.+ ...|-++...+..+|..+-.|+.
T Consensus 10 kk~~~KLSyk---------eqrEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWe 80 (89)
T 2lw1_A 10 KRSSSKLSYK---------LQRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWE 80 (89)
T ss_dssp SSSSCSCCHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667643 3567999999999999999999999862 23444556666666666555553
No 31
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=90.12 E-value=0.46 Score=31.49 Aligned_cols=31 Identities=19% Similarity=0.204 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 109 RTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLV 149 (262)
Q Consensus 109 HleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~ 149 (262)
+|..||++|+.|-.++.. |+.||+|||..|-
T Consensus 2 RMnQledKvEel~~~~~~----------l~nEv~Rl~~lLg 32 (34)
T 2r2v_A 2 KLKQVADKLEEVASKLYH----------NANELARVAKLLG 32 (34)
T ss_dssp CHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHH----------HHHHHHHHHHHhc
Confidence 477889999888776644 4788888888763
No 32
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=89.61 E-value=1.5 Score=33.03 Aligned_cols=48 Identities=21% Similarity=0.140 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 024834 107 KARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIEG 157 (262)
Q Consensus 107 QaHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrgri~~ 157 (262)
.+++.+||.+++-+.....+|-..| +....++.+|+.++..|.+|+..
T Consensus 13 e~Ri~~LE~klAfqE~tIeeLn~~v---~~Qq~~Id~L~~ql~~L~~rl~~ 60 (78)
T 3efg_A 13 EARLVELETRLSFQEQALTELSEAL---ADARLTGARNAELIRHLLEDLGK 60 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999888887777766 34467888899999999888874
No 33
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=89.43 E-value=1.8 Score=32.35 Aligned_cols=49 Identities=31% Similarity=0.364 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Q 024834 100 RKYREKKKARTASLEDEVVRLRAVNQQLLKRLQG----QAALEAEVARLKCLL 148 (262)
Q Consensus 100 RRSR~RKQaHleeLE~QV~qLraeNqqLl~rLq~----~a~LEaEn~rLRaqL 148 (262)
++-|+..+..+..||+++.+++++-++.+..-+. ..+|+.|++.-|..|
T Consensus 4 ~~e~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatYRkLL 56 (74)
T 2xv5_A 4 ARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLL 56 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888999999999999999988776665443 335666666666553
No 34
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=89.39 E-value=0.82 Score=37.11 Aligned_cols=51 Identities=16% Similarity=0.307 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHH-HHhhhhhh
Q 024834 108 ARTASLEDEVVRLRAVNQQLLKRLQG----------------QAALEAEVARLKCLLVD-IRGRIEGE 158 (262)
Q Consensus 108 aHleeLE~QV~qLraeNqqLl~rLq~----------------~a~LEaEn~rLRaqL~e-lrgri~~~ 158 (262)
.-+++|..|+.+|+-||..|.++|+. .+.+-+-+.+|-++.++ |+.||...
T Consensus 8 ~t~EeLaaeL~kLqmENK~LKkkl~~~g~~~p~d~~LTp~qKea~I~s~~~~Lss~A~~KIe~kVr~~ 75 (110)
T 2oa5_A 8 KTYEEMVKEVERLKLENKTLKQKVKSSGAVSSDDSILTAAKRESIIVSSSRALGAVAMRKIEAKVRSR 75 (110)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHTC---------CCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34899999999999999999999972 33444555666555443 56666543
No 35
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=88.65 E-value=1.9 Score=30.42 Aligned_cols=41 Identities=20% Similarity=0.249 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 108 ARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDI 151 (262)
Q Consensus 108 aHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~el 151 (262)
.++.+|..++..|.+.|..|..-|+. -..|+..|+++|..+
T Consensus 9 ~r~~~l~~~l~~L~~rN~rL~~~L~~---AR~el~~Lkeele~L 49 (51)
T 3m91_A 9 RDIHQLEARIDSLAARNSKLMETLKE---ARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHh
Confidence 45667889999999999988888753 345666666666554
No 36
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=88.34 E-value=2.3 Score=34.95 Aligned_cols=39 Identities=31% Similarity=0.254 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 024834 116 EVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIEG 157 (262)
Q Consensus 116 QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrgri~~ 157 (262)
+|..|+.|+..|..+|+ ..++|+.+||.+...+..||.-
T Consensus 72 ~vqeLqgEI~~Lnq~Lq---~a~ae~erlr~~~~~~~~r~~~ 110 (121)
T 3mq7_A 72 KVEELEGEITTLNHKLQ---DASAEVERLRRENQVLSVRIAD 110 (121)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHhhchhhhhHhhh
Confidence 46666666666666664 3578999999998888888753
No 37
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=87.82 E-value=1 Score=32.98 Aligned_cols=46 Identities=33% Similarity=0.304 Sum_probs=29.8
Q ss_pred cCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024834 91 RPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRG 153 (262)
Q Consensus 91 RmlsNRESARRSR~RKQaHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrg 153 (262)
++-.||-|+||+|.|=+..++-..+-. ++--.||.+||-.+..+--
T Consensus 5 kryknr~asrk~rakfkn~lqh~r~va-----------------aaks~en~rlr~l~kqmcp 50 (63)
T 2c9l_Y 5 KRYKNRVAARKSRAKFKQLLQHYREVA-----------------AAKSSENDRLRLLLKQMCP 50 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HhhcccchHHHHHHHHhCC
Confidence 345799999999988765554332211 3345678888877665533
No 38
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=86.96 E-value=2.9 Score=32.16 Aligned_cols=50 Identities=30% Similarity=0.331 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHH---Hhhhhhhc
Q 024834 110 TASLEDEVVRLRAVNQQLLKRLQG---------QAALEAEVARLKCLLVDI---RGRIEGEI 159 (262)
Q Consensus 110 leeLE~QV~qLraeNqqLl~rLq~---------~a~LEaEn~rLRaqL~el---rgri~~~i 159 (262)
++.-.++|..|+++|..|..++.. ....++++..||.++..+ ++++..++
T Consensus 18 lAsyIdKVR~LEqqN~~Le~~i~~l~~~~~~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~ 79 (93)
T 3s4r_A 18 FANLIDKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVER 79 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666666666666666542 345678888888888775 33444444
No 39
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=86.66 E-value=1.4 Score=31.09 Aligned_cols=31 Identities=26% Similarity=0.294 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 115 DEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLL 148 (262)
Q Consensus 115 ~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL 148 (262)
.+|..|+.+|+.|..++ ..|.++++.|+++|
T Consensus 19 ~d~eaLk~E~~eLk~k~---~~L~~~~~el~~~l 49 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKY---EAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 56778888887777664 45556666666554
No 40
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=86.46 E-value=3.4 Score=33.82 Aligned_cols=52 Identities=19% Similarity=0.123 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhh
Q 024834 104 EKKKARTASLEDEVVRLRAVNQQLLKRLQG----QAALEAEVARLKCLLVDIRGRI 155 (262)
Q Consensus 104 ~RKQaHleeLE~QV~qLraeNqqLl~rLq~----~a~LEaEn~rLRaqL~elrgri 155 (262)
.+.++..+.|+.++..+..+...|...|.. ...++.++..|+.++.++..++
T Consensus 71 ~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~ 126 (138)
T 3hnw_A 71 FKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNI 126 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566778888888888887777777642 4455666666766666665544
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=85.76 E-value=3.3 Score=38.67 Aligned_cols=43 Identities=23% Similarity=0.236 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhhhh
Q 024834 115 DEVVRLRAVNQQLLKRLQG----QAALEAEVARLKCLLVDIRGRIEG 157 (262)
Q Consensus 115 ~QV~qLraeNqqLl~rLq~----~a~LEaEn~rLRaqL~elrgri~~ 157 (262)
++.++|+.+..+|.++++. ...+..|+..+++++.++..++++
T Consensus 537 ~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~ 583 (597)
T 3oja_B 537 KETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNR 583 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred cchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3333344444444444432 335556677777777777776654
No 42
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=85.27 E-value=3.2 Score=32.07 Aligned_cols=55 Identities=20% Similarity=0.230 Sum_probs=42.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Q 024834 95 NREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQG----QAALEAEVARLKCLLVDIR 152 (262)
Q Consensus 95 NRESARRSR~RKQaHleeLE~QV~qLraeNqqLl~rLq~----~a~LEaEn~rLRaqL~elr 152 (262)
|=.||--+=.|-|+- +.+++.+.|..|..+..+|++ +..|++|+.+|+.++.+|+
T Consensus 14 eLQSALeaEIqAKQ~---i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eelq 72 (81)
T 1wt6_A 14 ELQEALEEEVLTRQS---LSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666777666665543 556789999999999999985 6678888888888888865
No 43
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=85.12 E-value=1.4 Score=35.39 Aligned_cols=16 Identities=31% Similarity=0.482 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 024834 136 ALEAEVARLKCLLVDI 151 (262)
Q Consensus 136 ~LEaEn~rLRaqL~el 151 (262)
.|++|+.+||.+-..|
T Consensus 69 eLe~everL~~ENq~L 84 (104)
T 3s9g_A 69 ELELELDRLRAENLQL 84 (104)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444555554444333
No 44
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=84.21 E-value=1.7 Score=30.02 Aligned_cols=27 Identities=26% Similarity=0.358 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 106 KKARTASLEDEVVRLRAVNQQLLKRLQ 132 (262)
Q Consensus 106 KQaHleeLE~QV~qLraeNqqLl~rLq 132 (262)
.+...++||+.|.-|+.||+.|.+.|+
T Consensus 15 le~~naeLEervstLq~EN~mLRqvl~ 41 (42)
T 2oqq_A 15 LENKNSELEERLSTLQNENQMLRHILK 41 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 456788999999999999999988764
No 45
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=83.88 E-value=3.7 Score=43.13 Aligned_cols=23 Identities=22% Similarity=0.241 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q 024834 134 QAALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 134 ~a~LEaEn~rLRaqL~elrgri~ 156 (262)
...|+.|+..||+++.++...+.
T Consensus 1025 v~~L~~e~~~L~qq~~~l~~~~~ 1047 (1080)
T 2dfs_A 1025 VSELKEQNTLLKTEKEELNRRIH 1047 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34688899999999888875443
No 46
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=83.64 E-value=5.5 Score=31.59 Aligned_cols=48 Identities=23% Similarity=0.347 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHHhhhh
Q 024834 109 RTASLEDEVVRLRAVNQQLLKRLQG-------------------------QAALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 109 HleeLE~QV~qLraeNqqLl~rLq~-------------------------~a~LEaEn~rLRaqL~elrgri~ 156 (262)
.+++|+.+..+|+.++..|.-+|-. +...+.++..|++++..|+.+|.
T Consensus 20 ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~~v~ 92 (100)
T 1go4_E 20 KVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLLR 92 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666555521 23556677888888888887776
No 47
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=83.55 E-value=2.3 Score=27.59 Aligned_cols=22 Identities=41% Similarity=0.436 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024834 110 TASLEDEVVRLRAVNQQLLKRL 131 (262)
Q Consensus 110 leeLE~QV~qLraeNqqLl~rL 131 (262)
++.||.+|++-.++|-||.+.+
T Consensus 3 vaqlekevaqaeaenyqleqev 24 (33)
T 1fmh_A 3 VAQLEKEVAQAEAENYQLEQEV 24 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHH
Confidence 5688999999999997775543
No 48
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=82.93 E-value=5.5 Score=28.17 Aligned_cols=42 Identities=24% Similarity=0.279 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Q 024834 107 KARTASLEDEVVRLRAVNQQLLKRLQG----QAALEAEVARLKCLL 148 (262)
Q Consensus 107 QaHleeLE~QV~qLraeNqqLl~rLq~----~a~LEaEn~rLRaqL 148 (262)
+..+..||+++.++|++-.+..+.-+. -.+|+.|++.-|..|
T Consensus 6 q~~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EIatYRkLL 51 (59)
T 1gk6_A 6 EDKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIATYRKLL 51 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 567888999999998887766655543 346777777777654
No 49
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=80.66 E-value=2.3 Score=38.58 Aligned_cols=44 Identities=18% Similarity=0.206 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024834 107 KARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRG 153 (262)
Q Consensus 107 QaHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrg 153 (262)
..++.+|+.++..|.+.|..|...| ..+..|+.+||.++..|+.
T Consensus 53 ~~~l~eL~~ql~~L~arNe~L~~~L---k~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 53 ARDIHQLEARIDSLAARNSKLMETL---KEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp CHHHHHHHHHHHHHTTTHHHHHHHH---HHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhcC
Confidence 3457788888888888888887776 4567788888888777665
No 50
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=80.24 E-value=15 Score=27.60 Aligned_cols=45 Identities=31% Similarity=0.332 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Q 024834 105 KKKARTASLEDEVVRLRAVNQQLLKRLQG----QAALEAEVARLKCLLV 149 (262)
Q Consensus 105 RKQaHleeLE~QV~qLraeNqqLl~rLq~----~a~LEaEn~rLRaqL~ 149 (262)
.-+..+..||.++.++|++-+...+..+. -.+|+.|++.-|..|.
T Consensus 32 ~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatYRkLLE 80 (86)
T 1x8y_A 32 TSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLE 80 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHc
Confidence 34667788888888888877666555443 3467778777776654
No 51
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=77.69 E-value=18 Score=31.03 Aligned_cols=63 Identities=24% Similarity=0.311 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHH----HHHHHHHhhhhhhc
Q 024834 97 EAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQG-----------QAALEAEVARLK----CLLVDIRGRIEGEI 159 (262)
Q Consensus 97 ESARRSR~RKQaHleeLE~QV~qLraeNqqLl~rLq~-----------~a~LEaEn~rLR----aqL~elrgri~~~i 159 (262)
+.-||.|.+-...+.+|+..+..|..+...+..++.. ...||.|.+.+. -+|..+..+++.+.
T Consensus 79 ~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~eid~~~eLKalQ~~~eqE~ 156 (168)
T 3o0z_A 79 EAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEIDLNYKLKSLQQRLEQEV 156 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 3456777777776777777777776666666666531 223444444444 44555555555443
No 52
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=77.48 E-value=18 Score=29.00 Aligned_cols=50 Identities=26% Similarity=0.350 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhhhhh
Q 024834 109 RTASLEDEVVRLRAVNQQLLKRLQG----QAALEAEVARLKCLLVDIRGRIEGE 158 (262)
Q Consensus 109 HleeLE~QV~qLraeNqqLl~rLq~----~a~LEaEn~rLRaqL~elrgri~~~ 158 (262)
.+..|+.++.+|+..+..|..+|.. +..||.....--+-|.++..+++..
T Consensus 36 ~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~a 89 (111)
T 2v66_B 36 QVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQA 89 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4667888999999999988888863 4455555444555566666666643
No 53
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=77.12 E-value=8.7 Score=27.04 Aligned_cols=40 Identities=18% Similarity=0.303 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024834 114 EDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 114 E~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrgri~ 156 (262)
++++..|+.++.+|-.+ +..|.+....-|.++..|.+.|+
T Consensus 8 ~~r~~~l~~~l~~L~~r---N~rL~~~L~~AR~el~~Lkeele 47 (51)
T 3m91_A 8 ARDIHQLEARIDSLAAR---NSKLMETLKEARQQLLALREEVD 47 (51)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666555 56666666667777777766655
No 54
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=76.98 E-value=14 Score=26.13 Aligned_cols=46 Identities=13% Similarity=0.062 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024834 108 ARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 108 aHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrgri~ 156 (262)
+.+++|..+|.+|..+-.+|...+ ..+..++..-+.+......||+
T Consensus 4 aki~~Lss~V~~L~~kVdqLssdV---~al~~~v~~ak~eA~RAN~RlD 49 (52)
T 1jcd_A 4 AKADQASSDAQTANAKADQASNDA---NAARSDAQAAKDDAARANQRAD 49 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhh
Confidence 457778888888877777776654 3455566666666666666665
No 55
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=76.60 E-value=3 Score=30.92 Aligned_cols=36 Identities=25% Similarity=0.314 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 107 KARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLK 145 (262)
Q Consensus 107 QaHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLR 145 (262)
...+.+|+.....|..+|..|...+ ..|..|+..||
T Consensus 35 E~~v~~le~~~~~l~~en~~Lr~~i---~~L~~El~~lr 70 (70)
T 1gd2_E 35 ETQVVTLKELHSSTTLENDQLRQKV---RQLEEELRILK 70 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTHH---HHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHcC
Confidence 3457788888889999999887775 55667766654
No 56
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=75.61 E-value=11 Score=30.34 Aligned_cols=24 Identities=54% Similarity=0.565 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 107 KARTASLEDEVVRLRAVNQQLLKR 130 (262)
Q Consensus 107 QaHleeLE~QV~qLraeNqqLl~r 130 (262)
-+++.+|+.+|.+|+++|+.|+..
T Consensus 64 ~~~v~eLe~everL~~ENq~L~~e 87 (104)
T 3s9g_A 64 DARVRELELELDRLRAENLQLLTE 87 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 457778888888888888777654
No 57
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=75.38 E-value=11 Score=32.01 Aligned_cols=57 Identities=19% Similarity=0.195 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhhh
Q 024834 100 RKYREKKKARTASLEDEVVRLRAVNQQLLKRLQ----GQAALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 100 RRSR~RKQaHleeLE~QV~qLraeNqqLl~rLq----~~a~LEaEn~rLRaqL~elrgri~ 156 (262)
+.-|++=++.+.+|..++..++.+-+.|+..=+ ...+|..|+..||.++...+-+..
T Consensus 77 ~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~~~R~k~~ 137 (175)
T 3lay_A 77 QKIYDDYYTQTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDEQRVKRD 137 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455666666555555555543211 134677788888888877655444
No 58
>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=75.26 E-value=0.096 Score=41.32 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=20.6
Q ss_pred HHHhhccCcccHHHHHHHHHHHH
Q 024834 85 EKKTKKRPLGNREAVRKYREKKK 107 (262)
Q Consensus 85 d~RK~KRmlsNRESARRSR~RKQ 107 (262)
-.|..||+..||.||+++|.||.
T Consensus 64 lIrdiRRRgKNKvAAqnCRKRKl 86 (91)
T 2kz5_A 64 LVRDIRRRGKNKVAAQNYRKRKL 86 (91)
T ss_dssp HHHHHHHHHHHHHHTTSCCCCCC
T ss_pred HHHHHHHHhhhHHHHHHHHHHHH
Confidence 46889999999999999999985
No 59
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=74.57 E-value=12 Score=28.84 Aligned_cols=22 Identities=23% Similarity=0.268 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 024834 135 AALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 135 a~LEaEn~rLRaqL~elrgri~ 156 (262)
..|+.||..||.++..|...+.
T Consensus 46 ~~Le~EN~~Lr~~v~~L~~E~~ 67 (87)
T 1hjb_A 46 LELTAENERLQKKVEQLSRELS 67 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555544443
No 60
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=74.27 E-value=20 Score=26.68 Aligned_cols=43 Identities=26% Similarity=0.397 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Q 024834 106 KKARTASLEDEVVRLRAVNQQLLKRLQG----QAALEAEVARLKCLL 148 (262)
Q Consensus 106 KQaHleeLE~QV~qLraeNqqLl~rLq~----~a~LEaEn~rLRaqL 148 (262)
-+..+..||+++.++|.+-.+..+..+. -.+|+.|++.-|..|
T Consensus 31 ~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIatYRkLL 77 (84)
T 1gk4_A 31 YQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLL 77 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3556677777777777766655555443 235666666666544
No 61
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=74.26 E-value=17 Score=28.79 Aligned_cols=23 Identities=13% Similarity=0.141 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 024834 109 RTASLEDEVVRLRAVNQQLLKRL 131 (262)
Q Consensus 109 HleeLE~QV~qLraeNqqLl~rL 131 (262)
.+..|+.+++....+...|..+|
T Consensus 13 ~l~~le~~~~~~~~e~~~L~~~l 35 (97)
T 2eqb_B 13 DYNTLKRELSDRDDEVKRLREDI 35 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHH
Confidence 34444444444444444444444
No 62
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=74.13 E-value=3.9 Score=30.37 Aligned_cols=66 Identities=17% Similarity=0.263 Sum_probs=32.8
Q ss_pred cCcccHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024834 91 RPLGNREAVRKYREKKKARTASLEDEVVRL--RAVNQQLLKR-LQGQAALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 91 RmlsNRESARRSR~RKQaHleeLE~QV~qL--raeNqqLl~r-Lq~~a~LEaEn~rLRaqL~elrgri~ 156 (262)
|+..--.+-|+.|.+=...+.+|..-|-.. +..-..++.. +.-...|+.++..|+.+...|+.++.
T Consensus 6 rr~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~ 74 (82)
T 1am9_A 6 KRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAVH 74 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445677777777677777777766321 1111111111 11123455555555555555555444
No 63
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=74.08 E-value=15 Score=29.53 Aligned_cols=49 Identities=16% Similarity=0.312 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHhhhh
Q 024834 108 ARTASLEDEVVRLRAVNQQLLKRLQG--------QAALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 108 aHleeLE~QV~qLraeNqqLl~rLq~--------~a~LEaEn~rLRaqL~elrgri~ 156 (262)
++..+|..++.+|+.+...+..++.. ...|..|+..||..-..+..+|.
T Consensus 3 k~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iR 59 (111)
T 2v66_B 3 QRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVR 59 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567888888888888888888763 34578888888777666655544
No 64
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=73.89 E-value=10 Score=35.51 Aligned_cols=46 Identities=22% Similarity=0.229 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 024834 109 RTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIEG 157 (262)
Q Consensus 109 HleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrgri~~ 157 (262)
.+++|+.++++++.++++|.+++ ..-+.+..+|-.++.++++.|.-
T Consensus 18 ~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~rr~l~n~~~elkgnIrV 63 (403)
T 4etp_A 18 KIAALKEKIKDTELGMKELNEIL---IKEETVRRTLHNELQELRGNIRV 63 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHCSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHcCCCeEE
Confidence 33444444444444444444433 22344455666777777776664
No 65
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=73.52 E-value=16 Score=27.69 Aligned_cols=47 Identities=19% Similarity=0.201 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024834 104 EKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 104 ~RKQaHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrgri~ 156 (262)
..=+.+++.|..+|.+||..++++...|. .-..+.|....+|-.|+.
T Consensus 23 ~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~------ql~~rQrd~Y~dLD~Rl~ 69 (83)
T 2xdj_A 23 TQLQQQLSDNQSDIDSLRGQIQENQYQLN------QVVERQKQILLQIDSLSS 69 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHH------HHHHHHHHHHHHHHHHHh
Confidence 44556677777777777777766655542 223344444555555544
No 66
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=72.95 E-value=14 Score=31.24 Aligned_cols=14 Identities=36% Similarity=0.415 Sum_probs=0.0
Q ss_pred CCChhhHHHHHhcc
Q 024834 23 SCSMDSFFEDILKD 36 (262)
Q Consensus 23 s~s~~~~~d~~l~~ 36 (262)
.=|||++|-+-|+.
T Consensus 23 ~~~md~~l~~rL~~ 36 (152)
T 3a7p_A 23 TDSMDDLLIRRLTD 36 (152)
T ss_dssp --------------
T ss_pred chhHHHHHHHHHHH
Confidence 44777776555443
No 67
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=72.31 E-value=4 Score=31.32 Aligned_cols=30 Identities=33% Similarity=0.402 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 115 DEVVRLRAVNQQLLKRLQGQAALEAEVARLKCL 147 (262)
Q Consensus 115 ~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaq 147 (262)
++|+-||.....|..++ ..||.||..||..
T Consensus 15 EEVevLKe~I~EL~e~~---~qLE~EN~~Lk~~ 44 (78)
T 1dip_A 15 EEVEILKEQIRELVEKN---SQLERENTLLKTL 44 (78)
T ss_dssp TSCHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHh
Confidence 35566666666666663 5678899999875
No 68
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=72.22 E-value=16 Score=25.62 Aligned_cols=38 Identities=32% Similarity=0.373 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 111 ASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDI 151 (262)
Q Consensus 111 eeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~el 151 (262)
+.|..++++|+..|-||.+--| .||.-++.||.+++.+
T Consensus 6 aylrkkiarlkkdnlqlerdeq---nlekiianlrdeiarl 43 (52)
T 3he5_B 6 AYLRKKIARLKKDNLQLERDEQ---NLEKIIANLRDEIARL 43 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhhhhhHh---hHHHHHHHHHHHHHHH
Confidence 4566677888888888766533 3444455555554443
No 69
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=71.95 E-value=8.5 Score=33.32 Aligned_cols=40 Identities=28% Similarity=0.316 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024834 107 KARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 107 QaHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrgri~ 156 (262)
+.-++.|-+.+..|+++|++| ..||.+|+.+..++.+|++
T Consensus 144 ~elid~~ld~~~~L~~~n~~L----------qkeNeRL~~E~n~~l~qlE 183 (184)
T 3w03_C 144 RELICYCLDTIAENQAKNEHL----------QKENERLLRDWNDVQGRFE 183 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHhc
Confidence 346777777777777777555 5667777777777777654
No 70
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=71.93 E-value=17 Score=29.12 Aligned_cols=70 Identities=17% Similarity=0.217 Sum_probs=42.9
Q ss_pred hHHHhhccCccc-----HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024834 84 TEKKTKKRPLGN-----REAVRKYREKK-KARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 84 ~d~RK~KRmlsN-----RESARRSR~RK-QaHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrgri~ 156 (262)
.++|=+|=|++| --+|..|---. +..++++|+.+++|+.++...-+.+ ..+......|+.++..+++.|.
T Consensus 7 vEEKyrKAMVsnAQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~---e~~Kr~~~~L~~~~~~lk~~L~ 82 (103)
T 4h22_A 7 VEEKYKKAMVSNAQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEF---EREKHAHSILQFQFAEVKEALK 82 (103)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 356677788774 45666664433 4467777777777777776555443 4455555666666666666555
No 71
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=71.60 E-value=24 Score=30.57 Aligned_cols=47 Identities=28% Similarity=0.362 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhhh
Q 024834 110 TASLEDEVVRLRAVNQQLLKRLQG----QAALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 110 leeLE~QV~qLraeNqqLl~rLq~----~a~LEaEn~rLRaqL~elrgri~ 156 (262)
+..|+.++..|+..+..|..+|.. +..||.....+.+-+.++..+++
T Consensus 90 ~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln 140 (189)
T 2v71_A 90 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLN 140 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHH
Confidence 778888899999999888888852 44455554444455555444444
No 72
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=71.46 E-value=33 Score=29.03 Aligned_cols=14 Identities=21% Similarity=0.249 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHH
Q 024834 136 ALEAEVARLKCLLV 149 (262)
Q Consensus 136 ~LEaEn~rLRaqL~ 149 (262)
.|++||..|=..|+
T Consensus 121 kLq~EN~~LV~RWM 134 (152)
T 3a7p_A 121 DLKKEHSQLVARWL 134 (152)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444433333
No 73
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=71.33 E-value=20 Score=26.94 Aligned_cols=14 Identities=14% Similarity=0.071 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHH
Q 024834 138 EAEVARLKCLLVDI 151 (262)
Q Consensus 138 EaEn~rLRaqL~el 151 (262)
++++..||.++-.+
T Consensus 53 d~eI~~LqseLDKf 66 (72)
T 3nmd_A 53 DELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 44444555444433
No 74
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=71.21 E-value=14 Score=34.85 Aligned_cols=44 Identities=20% Similarity=0.132 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024834 110 TASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 110 leeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrgri~ 156 (262)
+++|+.+.+++++++..+.++| ...+.+..+|-.++.++++.|.
T Consensus 19 ~~~l~~~~~~~~~~~~~~~~~l---~~~~~~rr~l~n~~~~l~gnIr 62 (412)
T 3u06_A 19 TEELLRCNEQQAAELETCKEQL---FQSNMERKELHNTVMDLRDNIR 62 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTCSEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhCCCEE
Confidence 3444444444444444444443 2234455566677777777655
No 75
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=71.16 E-value=6.8 Score=26.08 Aligned_cols=34 Identities=24% Similarity=0.227 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 116 EVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLV 149 (262)
Q Consensus 116 QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~ 149 (262)
+..+++..|..|..=|.....||.+|..|..++.
T Consensus 4 EKe~mq~LNdrlAsyidkVR~LE~~N~~Le~~i~ 37 (39)
T 1gk7_A 4 EKVELQELNDRFANYIDKVRFLEQQNKILLAELE 37 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777666655556678888888877653
No 76
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=70.87 E-value=20 Score=31.05 Aligned_cols=20 Identities=10% Similarity=0.330 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 024834 136 ALEAEVARLKCLLVDIRGRI 155 (262)
Q Consensus 136 ~LEaEn~rLRaqL~elrgri 155 (262)
.|+.|+..||.....+..+|
T Consensus 92 ~Lq~el~~l~~~~~~l~~~i 111 (189)
T 2v71_A 92 VLEDDLSQTRAIKEQLHKYV 111 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445555554444444433
No 77
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=70.52 E-value=11 Score=33.09 Aligned_cols=33 Identities=27% Similarity=0.292 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 111 ASLEDEVVRLRAVNQQLLKRLQGQAALEAEVAR 143 (262)
Q Consensus 111 eeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~r 143 (262)
+=.|-|+.+||++|++|..+|......-.+|.+
T Consensus 68 SL~erQ~~~LR~r~~~Le~~L~~Li~~A~~Ne~ 100 (252)
T 3e98_A 68 SLVERQVRLLRERNIEMRHRLSQLMDVARENDR 100 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555666666666555543333334433
No 78
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=70.47 E-value=35 Score=26.37 Aligned_cols=57 Identities=16% Similarity=0.200 Sum_probs=29.3
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 93 LGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIR 152 (262)
Q Consensus 93 lsNRESARRSR~RKQaHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elr 152 (262)
.+-||+|+--+.=+++..+.|..-.++|.. +|.........|+.++.+++..+.+|.
T Consensus 22 FgKrEaA~Ee~YfrqkekEqL~~LKkkl~~---el~~h~~ei~~le~~i~rhk~~i~~l~ 78 (84)
T 1gmj_A 22 FGKREQAEEERYFRARAKEQLAALKKHKEN---EISHHAKEIERLQKEIERHKQSIKKLK 78 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455888887664444444444332222212 222222233556777777777766664
No 79
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=70.40 E-value=5.8 Score=29.12 Aligned_cols=18 Identities=11% Similarity=0.187 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 024834 138 EAEVARLKCLLVDIRGRI 155 (262)
Q Consensus 138 EaEn~rLRaqL~elrgri 155 (262)
+.|+..|+.+...|..+|
T Consensus 60 ~~e~~~L~~~~~~L~~~l 77 (83)
T 1nkp_B 60 QQDIDDLKRQNALLEQQV 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444443333
No 80
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=70.36 E-value=3.4 Score=31.73 Aligned_cols=24 Identities=21% Similarity=0.167 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 107 KARTASLEDEVVRLRAVNQQLLKR 130 (262)
Q Consensus 107 QaHleeLE~QV~qLraeNqqLl~r 130 (262)
|.+|.+|++++.+|+.||.-|+.-
T Consensus 21 Ke~I~EL~e~~~qLE~EN~~Lk~~ 44 (78)
T 1dip_A 21 KEQIRELVEKNSQLERENTLLKTL 44 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456777777777777777655443
No 81
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=69.64 E-value=6.4 Score=27.64 Aligned_cols=24 Identities=17% Similarity=0.261 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 108 ARTASLEDEVVRLRAVNQQLLKRL 131 (262)
Q Consensus 108 aHleeLE~QV~qLraeNqqLl~rL 131 (262)
+.+++|..++..|++++++|..+|
T Consensus 26 ~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 26 LELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555666666655555554
No 82
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=69.58 E-value=19 Score=29.01 Aligned_cols=23 Identities=17% Similarity=0.257 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q 024834 134 QAALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 134 ~a~LEaEn~rLRaqL~elrgri~ 156 (262)
+....++|..|+.++.+|...|.
T Consensus 77 l~~R~~~Vsalq~KiaeLKrqLA 99 (107)
T 2k48_A 77 LQNRRAAVSTLETKLGELKRQLA 99 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777776665554
No 83
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=69.28 E-value=16 Score=27.58 Aligned_cols=46 Identities=28% Similarity=0.392 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024834 108 ARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 108 aHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrgri~ 156 (262)
..+.++..+++.|+...+-+++|| |.+|.+=.-|-..|..+..||+
T Consensus 21 sEI~EID~Ki~nL~~mR~ivldRl---A~lEqdE~~LE~~l~~i~~rle 66 (72)
T 2xu6_A 21 SEIRDIEVEVENLRQKKEKLLGKI---ANIEQNQLMLEDNLKQIDDRLD 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhHHHHHHHHHHHHHHHH
Confidence 567889999999999999999997 6677777777777777777765
No 84
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=69.27 E-value=5.2 Score=25.66 Aligned_cols=21 Identities=33% Similarity=0.494 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 024834 135 AALEAEVARLKCLLVDIRGRI 155 (262)
Q Consensus 135 a~LEaEn~rLRaqL~elrgri 155 (262)
+.||+||.+|++.+.++-.++
T Consensus 9 asleaenkqlkakveellakv 29 (31)
T 1p9i_A 9 ASLEAENKQLKAKVEELLAKV 29 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 566777777777777766554
No 85
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=69.24 E-value=22 Score=30.76 Aligned_cols=15 Identities=7% Similarity=-0.113 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHH
Q 024834 136 ALEAEVARLKCLLVD 150 (262)
Q Consensus 136 ~LEaEn~rLRaqL~e 150 (262)
.++++...|+.+...
T Consensus 154 e~~~e~~~l~~~r~~ 168 (256)
T 3na7_A 154 NIKETQQIIFKKKED 168 (256)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444433
No 86
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=68.92 E-value=33 Score=25.97 Aligned_cols=19 Identities=5% Similarity=0.137 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 024834 135 AALEAEVARLKCLLVDIRG 153 (262)
Q Consensus 135 a~LEaEn~rLRaqL~elrg 153 (262)
..|..||++||.++.++.-
T Consensus 30 ~~Lq~Ev~~LRGqiE~~~~ 48 (83)
T 2xdj_A 30 SDNQSDIDSLRGQIQENQY 48 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHH
Confidence 3455555555555554433
No 87
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=68.27 E-value=21 Score=34.01 Aligned_cols=65 Identities=14% Similarity=0.120 Sum_probs=42.8
Q ss_pred hccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024834 89 KKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 89 ~KRmlsNRESARRSR~RKQaHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrgri~ 156 (262)
+++...|.+.|-+.=.+=+..+..||..|....++.+.|...|. .++..+..|+.++.+|..++.
T Consensus 72 Q~~~~d~~e~~tq~skkml~~~~~~e~~~~~~~~~i~~l~~~~~---~~~~~i~~l~~~i~~l~~~~~ 136 (409)
T 1m1j_C 72 KQTLPQSIEQLTQKSKKIIEEIIRYENTILAHENTIQQLTDMHI---MNSNKITQLKQKIAQLESHCQ 136 (409)
T ss_dssp TTCCSSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTTSC
T ss_pred cCCCCCchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHHhh
Confidence 45666777777544444455666777766666666666666653 456777888888888877654
No 88
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=68.00 E-value=26 Score=27.03 Aligned_cols=44 Identities=25% Similarity=0.337 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Q 024834 105 KKKARTASLEDEVVRLRAVNQQLLKRLQG----QAALEAEVARLKCLL 148 (262)
Q Consensus 105 RKQaHleeLE~QV~qLraeNqqLl~rLq~----~a~LEaEn~rLRaqL 148 (262)
.-+..+..||+++.+++++-.+.+..-+. -..|+.|++.-|..|
T Consensus 41 ~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~EIatYrkLL 88 (95)
T 3mov_A 41 NSRRMLTDKEREMAEIRDQMQQQLNDYEQLLDVKLALDMEISAYRKLL 88 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777888888887776555444332 235666666655543
No 89
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=67.87 E-value=23 Score=28.50 Aligned_cols=49 Identities=14% Similarity=0.135 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024834 103 REKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGR 154 (262)
Q Consensus 103 R~RKQaHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrgr 154 (262)
...-+..+.+|+.+|.+|+++...-.... .....|+..||.++..++.+
T Consensus 35 ~~E~q~~v~ql~~~i~~Le~eL~e~r~~~---q~a~~e~e~Lr~e~~~l~~~ 83 (120)
T 3i00_A 35 KTESQRVVLQLKGHVSELEADLAEQQHLR---QQAADDCEFLRAELDELRRQ 83 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555554433221 12234556677777766443
No 90
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=67.83 E-value=28 Score=24.24 Aligned_cols=22 Identities=23% Similarity=0.123 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 024834 134 QAALEAEVARLKCLLVDIRGRI 155 (262)
Q Consensus 134 ~a~LEaEn~rLRaqL~elrgri 155 (262)
...|+.||..|+.++..|+..+
T Consensus 31 v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 31 VAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3568888899988888887654
No 91
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=67.07 E-value=8.6 Score=34.84 Aligned_cols=41 Identities=17% Similarity=0.288 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 024834 114 EDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIEG 157 (262)
Q Consensus 114 E~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrgri~~ 157 (262)
+..+++|+.++.+|..+ +..|.++...||.++..|+..|+.
T Consensus 53 ~~~l~eL~~ql~~L~ar---Ne~L~~~Lk~ar~El~~LkeEler 93 (251)
T 3m9b_A 53 ARDIHQLEARIDSLAAR---NSKLMETLKEARQQLLALREEVDR 93 (251)
T ss_dssp CHHHHHHHHHHHHHTTT---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666555 456777777788888777777764
No 92
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=67.01 E-value=29 Score=24.04 Aligned_cols=41 Identities=24% Similarity=0.307 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 024834 112 SLEDEVVRLRAVNQQLLKRLQG-QAALEAEVARLKCLLVDIR 152 (262)
Q Consensus 112 eLE~QV~qLraeNqqLl~rLq~-~a~LEaEn~rLRaqL~elr 152 (262)
+||+.|.+|..--..|..|+.. .+..++--..|++.+..|.
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae~~ssq~KlKqRit~lE 43 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAEYNATQMKMKQRLSQLE 43 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6888888888888888777643 2223333345555555444
No 93
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=66.43 E-value=34 Score=26.22 Aligned_cols=17 Identities=18% Similarity=0.139 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 024834 110 TASLEDEVVRLRAVNQQ 126 (262)
Q Consensus 110 leeLE~QV~qLraeNqq 126 (262)
+++|..+-..|..+++.
T Consensus 29 ieELKekN~~L~~e~~e 45 (81)
T 2jee_A 29 IEELKEKNNSLSQEVQN 45 (81)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 94
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=66.07 E-value=46 Score=28.71 Aligned_cols=23 Identities=17% Similarity=0.075 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 024834 110 TASLEDEVVRLRAVNQQLLKRLQ 132 (262)
Q Consensus 110 leeLE~QV~qLraeNqqLl~rLq 132 (262)
+..|..++..++..+..|..++.
T Consensus 92 ~~aL~kEie~~~~~i~~lE~eil 114 (256)
T 3na7_A 92 LRSLNIEEDIAKERSNQANREIE 114 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555554
No 95
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=66.03 E-value=32 Score=24.25 Aligned_cols=21 Identities=24% Similarity=0.146 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 024834 134 QAALEAEVARLKCLLVDIRGR 154 (262)
Q Consensus 134 ~a~LEaEn~rLRaqL~elrgr 154 (262)
+..|..++..|+.++..|...
T Consensus 39 n~~L~~ei~~L~~e~~~Lk~~ 59 (63)
T 2wt7_A 39 KSALQTEIANLLKEKEKLEFI 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444443
No 96
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=65.77 E-value=8.2 Score=30.61 Aligned_cols=30 Identities=13% Similarity=0.131 Sum_probs=17.4
Q ss_pred hhccCcccHHHHHHHHHHHHHHHHHHHHHH
Q 024834 88 TKKRPLGNREAVRKYREKKKARTASLEDEV 117 (262)
Q Consensus 88 K~KRmlsNRESARRSR~RKQaHleeLE~QV 117 (262)
.++|+..--.+.||.|.+=...+.+|..-|
T Consensus 24 ~~~kr~~Hn~~ERrRR~~In~~~~~L~~lv 53 (118)
T 4ati_A 24 ERQKKDNHNLIERRRRFNINDRIKELGTLI 53 (118)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666788888888777777777654
No 97
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=65.47 E-value=18 Score=27.20 Aligned_cols=22 Identities=23% Similarity=0.268 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 024834 135 AALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 135 a~LEaEn~rLRaqL~elrgri~ 156 (262)
..|+.||..|+.++..|...+.
T Consensus 46 ~~L~~eN~~L~~~v~~L~~E~~ 67 (78)
T 1gu4_A 46 LELTAENERLQKKVEQLSRELS 67 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555544433
No 98
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=65.31 E-value=6.5 Score=26.96 Aligned_cols=25 Identities=16% Similarity=0.111 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 108 ARTASLEDEVVRLRAVNQQLLKRLQ 132 (262)
Q Consensus 108 aHleeLE~QV~qLraeNqqLl~rLq 132 (262)
.+++.|+.+|..|+.+..+|...|+
T Consensus 44 ~~~~~L~~ri~~Le~~l~~l~~~l~ 68 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEENNRLKALLL 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3578888888888877777766553
No 99
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=65.19 E-value=30 Score=32.15 Aligned_cols=13 Identities=38% Similarity=0.307 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHH
Q 024834 136 ALEAEVARLKCLL 148 (262)
Q Consensus 136 ~LEaEn~rLRaqL 148 (262)
.++.|+.+|+.++
T Consensus 541 ~~~~~~~~le~~~ 553 (597)
T 3oja_B 541 DLEQENIALEKQL 553 (597)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHhhhHHHHHHH
Confidence 3344444444333
No 100
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=65.06 E-value=7.2 Score=24.49 Aligned_cols=24 Identities=46% Similarity=0.582 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 118 VRLRAVNQQLLKRLQGQAALEAEVARL 144 (262)
Q Consensus 118 ~qLraeNqqLl~rLq~~a~LEaEn~rL 144 (262)
.+|+..|..|.+.+ ++||-|++.|
T Consensus 3 rrlkqknarlkqei---aaleyeiaal 26 (28)
T 3ra3_B 3 RRLKQKNARLKQEI---AALEYEIAAL 26 (28)
T ss_dssp CHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred hHHHHhhhHHHHHH---HHHHHHHHHh
Confidence 34555665555554 5566666554
No 101
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=64.99 E-value=28 Score=26.06 Aligned_cols=21 Identities=14% Similarity=0.153 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 024834 112 SLEDEVVRLRAVNQQLLKRLQ 132 (262)
Q Consensus 112 eLE~QV~qLraeNqqLl~rLq 132 (262)
++..++..++..|+.|..+|+
T Consensus 4 ~~~~kLq~~E~~N~~Le~~v~ 24 (72)
T 3cve_A 4 NSHMKLQEVEIRNKDLEGQLS 24 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHH
Confidence 344555555555555555554
No 102
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=64.65 E-value=20 Score=26.96 Aligned_cols=22 Identities=18% Similarity=0.308 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhh
Q 024834 136 ALEAEVARLKCLLVDIRGRIEG 157 (262)
Q Consensus 136 ~LEaEn~rLRaqL~elrgri~~ 157 (262)
.+|.++..+..++.+|+..|+-
T Consensus 44 eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 44 ELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555554443
No 103
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=64.56 E-value=53 Score=26.71 Aligned_cols=49 Identities=10% Similarity=0.155 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhh
Q 024834 107 KARTASLEDEVVRLRAVNQQLLKRLQ----GQAALEAEVARLKCLLVDIRGRI 155 (262)
Q Consensus 107 QaHleeLE~QV~qLraeNqqLl~rLq----~~a~LEaEn~rLRaqL~elrgri 155 (262)
.+.+++++.++..|+.+...+..++. ....+..++..|..++..+...+
T Consensus 81 ~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 81 SLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444332 13556666666666666665444
No 104
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=63.74 E-value=34 Score=26.44 Aligned_cols=18 Identities=33% Similarity=0.534 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 024834 110 TASLEDEVVRLRAVNQQL 127 (262)
Q Consensus 110 leeLE~QV~qLraeNqqL 127 (262)
++.+++++..|+.+|.+|
T Consensus 47 ie~~~eEi~~Lk~en~~L 64 (83)
T 1wlq_A 47 IEQKDSEIARLRKENKDL 64 (83)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444443
No 105
>3k66_A Beta-amyloid-like protein; X-RAY amyloid precursor protein, heparin binding, alternative splicing, developmental protein, differentiation; 2.70A {Caenorhabditis elegans} PDB: 3k6b_A*
Probab=63.74 E-value=32 Score=31.00 Aligned_cols=55 Identities=20% Similarity=0.246 Sum_probs=41.3
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHH--------HHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 024834 97 EAVRKYREKK-KARTASLEDEVVRLRAVN--------QQLLKRLQG-QAALEAEVARLKCLLVDI 151 (262)
Q Consensus 97 ESARRSR~RK-QaHleeLE~QV~qLraeN--------qqLl~rLq~-~a~LEaEn~rLRaqL~el 151 (262)
|.-.|.|+-| -+..+++|.+.+.|.... +.|..+.|. ..+||.|++.-|.+|++.
T Consensus 26 e~~hr~km~kVMkEW~Eae~q~k~l~kaDpk~Ae~~k~~m~~rFQ~~v~sLEqE~a~ErqqL~et 90 (239)
T 3k66_A 26 DEKHRKKVDKVMKEWGDLETRYNEQKAKDPKGAEKFKSQMNARFQKTVSSLEEEHKRMRKEIEAV 90 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 4445556655 456789999999998866 566666664 778999999999999873
No 106
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=63.47 E-value=14 Score=26.97 Aligned_cols=15 Identities=20% Similarity=0.107 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHH
Q 024834 136 ALEAEVARLKCLLVD 150 (262)
Q Consensus 136 ~LEaEn~rLRaqL~e 150 (262)
.|+.++..|++++..
T Consensus 65 ~L~~~~~~L~~~l~~ 79 (83)
T 1nkp_B 65 DLKRQNALLEQQVRA 79 (83)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555555555543
No 107
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=63.16 E-value=45 Score=24.99 Aligned_cols=50 Identities=14% Similarity=0.180 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhhh
Q 024834 107 KARTASLEDEVVRLRAVNQQLLKRLQG----QAALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 107 QaHleeLE~QV~qLraeNqqLl~rLq~----~a~LEaEn~rLRaqL~elrgri~ 156 (262)
.+...+|+.+..+|..+...|...+.+ ...|.+.-..|-.++.++..||.
T Consensus 34 e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~rl~ 87 (89)
T 3bas_A 34 ERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKKLVG 87 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344456666666666666666555432 34455555556666666666654
No 108
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=63.10 E-value=23 Score=33.14 Aligned_cols=23 Identities=17% Similarity=0.403 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 024834 109 RTASLEDEVVRLRAVNQQLLKRL 131 (262)
Q Consensus 109 HleeLE~QV~qLraeNqqLl~rL 131 (262)
.+++|+.+++.|+.+..+|.+++
T Consensus 4 ~~~~~~~~~~~l~~~~~~l~~~~ 26 (403)
T 4etp_A 4 KIAALKEKIAALKEKIAALKEKI 26 (403)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555554
No 109
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=62.99 E-value=18 Score=26.22 Aligned_cols=22 Identities=41% Similarity=0.554 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024834 111 ASLEDEVVRLRAVNQQLLKRLQ 132 (262)
Q Consensus 111 eeLE~QV~qLraeNqqLl~rLq 132 (262)
=.|.+||..|+.+|.+|.+-|.
T Consensus 13 YaLkDqV~eL~qe~k~m~k~lE 34 (56)
T 2w6b_A 13 YALKDEVQELRQDNKKMKKSLE 34 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3588999999999999987764
No 110
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=62.99 E-value=24 Score=24.56 Aligned_cols=21 Identities=19% Similarity=0.325 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 024834 134 QAALEAEVARLKCLLVDIRGR 154 (262)
Q Consensus 134 ~a~LEaEn~rLRaqL~elrgr 154 (262)
+..|.+++..|+.++..|...
T Consensus 38 n~~L~~~i~~L~~e~~~Lk~~ 58 (61)
T 1t2k_D 38 NGQLQSEVTLLRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555543
No 111
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=62.83 E-value=14 Score=27.39 Aligned_cols=28 Identities=14% Similarity=0.091 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 107 KARTASLEDEVVRLRAVNQQLLKRLQGQ 134 (262)
Q Consensus 107 QaHleeLE~QV~qLraeNqqLl~rLq~~ 134 (262)
-.+|.+|+.++..|+.++.+|..+++..
T Consensus 49 i~YI~~Lq~~~~~L~~e~~~L~~~~~~~ 76 (82)
T 1am9_A 49 IDYIRFLQHSNQKLKQENLSLRTAVHKS 76 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4678888888888888888887777643
No 112
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=62.80 E-value=21 Score=28.34 Aligned_cols=13 Identities=31% Similarity=0.823 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHH
Q 024834 136 ALEAEVARLKCLL 148 (262)
Q Consensus 136 ~LEaEn~rLRaqL 148 (262)
.||+++..+|..+
T Consensus 88 ~lE~eL~~~r~em 100 (131)
T 3tnu_A 88 SVEEQLAQLRCEM 100 (131)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4566666665443
No 113
>3pmr_A Amyloid-like protein 1; heparin binding, cell adhesion; 2.11A {Homo sapiens} SCOP: a.47.4.0 PDB: 3q7l_A 3q7g_A 3qmk_A*
Probab=62.66 E-value=8.3 Score=34.37 Aligned_cols=55 Identities=24% Similarity=0.199 Sum_probs=36.6
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHH-HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 024834 97 EAVRKYREKK-KARTASLEDEVVRLR-AVNQQLLKRLQG-QAALEAEVARLKCLLVDI 151 (262)
Q Consensus 97 ESARRSR~RK-QaHleeLE~QV~qLr-aeNqqLl~rLq~-~a~LEaEn~rLRaqL~el 151 (262)
|.-.|.|+=| -+..+++|.|++.|. +.-+.|..+.|. ..+||.|++.-|.+|++.
T Consensus 38 e~~hr~k~~~VmkEW~eae~q~k~lpkadkk~m~~rFQ~~v~aLE~E~~~ErqqL~et 95 (219)
T 3pmr_A 38 EERRMRQINEVMREWAMADNQSKNLPKADRQALNEHFQSILQTLEEQVSGERQRLVET 95 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 5555555433 455677777776653 344555666654 678999999999999874
No 114
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=62.46 E-value=17 Score=27.09 Aligned_cols=20 Identities=25% Similarity=0.137 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 024834 108 ARTASLEDEVVRLRAVNQQL 127 (262)
Q Consensus 108 aHleeLE~QV~qLraeNqqL 127 (262)
.++..|+.+..+|..+..+|
T Consensus 47 ~yI~~L~~~~~~l~~e~~~L 66 (80)
T 1nlw_A 47 LHIKKLEDSDRKAVHQIDQL 66 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555544333
No 115
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=62.43 E-value=37 Score=25.92 Aligned_cols=48 Identities=13% Similarity=0.160 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHhhhh
Q 024834 109 RTASLEDEVVRLRAVNQQLLKRLQ----------------GQAALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 109 HleeLE~QV~qLraeNqqLl~rLq----------------~~a~LEaEn~rLRaqL~elrgri~ 156 (262)
-|++|++++...+.+..--..+|. .+....++|..|+..+.++...|-
T Consensus 6 ~l~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNK~~~~~R~~~V~~lq~Ki~elkrqlA 69 (78)
T 2ic6_A 6 TLKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRELA 69 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666554444333333332 144556677777777777666554
No 116
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=62.29 E-value=50 Score=25.16 Aligned_cols=38 Identities=18% Similarity=0.250 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024834 107 KARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGR 154 (262)
Q Consensus 107 QaHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrgr 154 (262)
.+.|++|..+|..+..++.+ |+.|+..|...+.+++.+
T Consensus 55 e~~i~~Lr~~i~~~~~ek~~----------l~~e~dnl~~~~~~~k~K 92 (93)
T 3s4r_A 55 EEEMRELRRQVDQLTNDKAR----------VEVERDNLAEDIMRLREK 92 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHhh
Confidence 34455555555555555544 444555555555555444
No 117
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=62.23 E-value=15 Score=27.91 Aligned_cols=20 Identities=25% Similarity=0.355 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 024834 113 LEDEVVRLRAVNQQLLKRLQ 132 (262)
Q Consensus 113 LE~QV~qLraeNqqLl~rLq 132 (262)
+..++..++..|+.|..+|+
T Consensus 11 ~~~klq~~E~rN~~Le~~v~ 30 (79)
T 3cvf_A 11 TQQKVQDLETRNAELEHQLR 30 (79)
T ss_dssp TTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHH
Confidence 33444444444555544443
No 118
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=62.23 E-value=12 Score=32.74 Aligned_cols=26 Identities=27% Similarity=0.155 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 106 KKARTASLEDEVVRLRAVNQQLLKRL 131 (262)
Q Consensus 106 KQaHleeLE~QV~qLraeNqqLl~rL 131 (262)
=|++|+.=..-|..|..||..|-.+|
T Consensus 11 ~q~ql~~ad~LV~~L~~En~~L~~ql 36 (190)
T 4emc_A 11 VKQQIDSADLLVANLVNENFVLSEKL 36 (190)
T ss_dssp ---------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555555555554444
No 119
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=62.16 E-value=16 Score=28.98 Aligned_cols=22 Identities=18% Similarity=0.206 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024834 109 RTASLEDEVVRLRAVNQQLLKR 130 (262)
Q Consensus 109 HleeLE~QV~qLraeNqqLl~r 130 (262)
.+..|..+++.|+.+|..|.++
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~ 34 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEE 34 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555444443
No 120
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=62.08 E-value=41 Score=25.93 Aligned_cols=55 Identities=16% Similarity=0.233 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHhhhhhhcc
Q 024834 106 KKARTASLEDEVVRLRAVNQQLLKRLQ---------GQAALEAEVARLKCLLVDIRGRIEGEIG 160 (262)
Q Consensus 106 KQaHleeLE~QV~qLraeNqqLl~rLq---------~~a~LEaEn~rLRaqL~elrgri~~~iG 160 (262)
=++.++.|++|..+|.++.+++..+|. .|..+-.+...+|----.|.|+|....|
T Consensus 6 L~~~i~~L~~q~~~L~~ei~~~~a~L~~~~~~~~~~~hI~~Lh~YNeiKD~gq~L~g~iA~~rg 69 (85)
T 3viq_B 6 LESRVHLLEQQKEQLESSLQDALAKLKNRDAKQTVQKHIDLLHTYNEIRDIALGMIGKVAEHEK 69 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC
Confidence 356677777777777777777765443 3444445555555555555666654444
No 121
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=61.86 E-value=21 Score=28.11 Aligned_cols=60 Identities=13% Similarity=0.286 Sum_probs=36.9
Q ss_pred HHHhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 85 EKKTKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVD 150 (262)
Q Consensus 85 d~RK~KRmlsNRESARRSR~RKQaHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~e 150 (262)
..+--||.+ ..+..-|.|=+..++.+...+..+|.... ..+.....+|+++..||..+.+
T Consensus 21 ~I~~LR~qi---d~~~~e~a~l~leldn~~~~~edfk~KyE---~E~~~r~~~E~di~~lrK~lD~ 80 (119)
T 3ol1_A 21 EMRELRRQV---DQLTNDKARVEVERDNLAEDIMRLREKLQ---EEMLQREEAENTLQSFRQDVDN 80 (119)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHhhhcccH
Confidence 333344444 44555566666667777777777665543 2333356788888899877665
No 122
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=61.78 E-value=18 Score=27.80 Aligned_cols=27 Identities=33% Similarity=0.506 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 107 KARTASLEDEVVRLRAVNQQLLKRLQG 133 (262)
Q Consensus 107 QaHleeLE~QV~qLraeNqqLl~rLq~ 133 (262)
.+++.+++.+.++|+..|.+|..|+|+
T Consensus 48 ~~r~~e~e~r~k~le~~n~~l~~riqE 74 (83)
T 4ath_A 48 QQRAKDLENRQKKLEHANRHLLLRVQE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 355666666667777777777776653
No 123
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=61.61 E-value=35 Score=26.97 Aligned_cols=23 Identities=17% Similarity=0.255 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q 024834 134 QAALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 134 ~a~LEaEn~rLRaqL~elrgri~ 156 (262)
+....++|..|+..+.+|...|.
T Consensus 47 ~~~R~~~V~~lq~Ki~elkr~lA 69 (96)
T 2ic9_A 47 LQSRRAAVSALETKLGELKRELA 69 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677777777777666555
No 124
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=61.32 E-value=6.6 Score=31.79 Aligned_cols=15 Identities=13% Similarity=0.062 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHH
Q 024834 109 RTASLEDEVVRLRAV 123 (262)
Q Consensus 109 HleeLE~QV~qLrae 123 (262)
.+.-|+.||.-.+..
T Consensus 63 ~I~vLkaQv~IY~~D 77 (110)
T 2v4h_A 63 TVPVLKAQADIYKAD 77 (110)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 666777777655543
No 125
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=60.66 E-value=47 Score=24.61 Aligned_cols=51 Identities=20% Similarity=0.049 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024834 106 KKARTASLEDEVVRLRAVNQ----------QLLKRLQGQAALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 106 KQaHleeLE~QV~qLraeNq----------qLl~rLq~~a~LEaEn~rLRaqL~elrgri~ 156 (262)
=-+.|+.||.+++.|.++-. .+..-+.....++.++..+=..+.+|...-+
T Consensus 27 le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWeeLe~~~~ 87 (89)
T 2lw1_A 27 LPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEYLEALKN 87 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHc
Confidence 34678899999988888652 2333334578899999999888888876544
No 126
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=60.51 E-value=43 Score=26.33 Aligned_cols=40 Identities=18% Similarity=0.210 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHH
Q 024834 110 TASLEDEVVRLRAVNQQLLKRLQG---------------QAALEAEVARLKCLLV 149 (262)
Q Consensus 110 leeLE~QV~qLraeNqqLl~rLq~---------------~a~LEaEn~rLRaqL~ 149 (262)
+..|+.++..|+..+..|...|.+ ...||+++..+|..+.
T Consensus 45 iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~ 99 (129)
T 3tnu_B 45 IQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMA 99 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 455666666666666666555532 2356677766665443
No 127
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=60.33 E-value=4.8 Score=35.43 Aligned_cols=40 Identities=35% Similarity=0.388 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024834 117 VVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 117 V~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrgri~ 156 (262)
...|++||++|.+++........++..|+++...|+.-|+
T Consensus 21 ~~~l~~eN~~Lk~e~~~l~~~~~~~~~l~~En~rLr~lL~ 60 (255)
T 2j5u_A 21 LKNTYTENQHLKERLEELAQLESEVADLKKENKDLKESLD 60 (255)
T ss_dssp -----CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4567788888888887666666777777777777777665
No 128
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=60.21 E-value=20 Score=28.27 Aligned_cols=21 Identities=24% Similarity=0.359 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 024834 108 ARTASLEDEVVRLRAVNQQLL 128 (262)
Q Consensus 108 aHleeLE~QV~qLraeNqqLl 128 (262)
..+..||.++.++|.+-.+.+
T Consensus 82 ~~i~~lE~eL~~~r~e~~~ql 102 (129)
T 3tnu_B 82 NKLAELEEALQKAKQDMARLL 102 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHH
Confidence 334455555555555444433
No 129
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=60.20 E-value=44 Score=26.44 Aligned_cols=22 Identities=23% Similarity=0.200 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024834 110 TASLEDEVVRLRAVNQQLLKRL 131 (262)
Q Consensus 110 leeLE~QV~qLraeNqqLl~rL 131 (262)
+..|+.++..|+..+..|...|
T Consensus 47 iq~L~~el~~l~~~~~sLE~~l 68 (131)
T 3tnu_A 47 MQNLEIELQSQLSMKASLENSL 68 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHH
Confidence 3444444444444444444444
No 130
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=60.05 E-value=29 Score=31.40 Aligned_cols=48 Identities=27% Similarity=0.322 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 024834 107 KARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIEG 157 (262)
Q Consensus 107 QaHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrgri~~ 157 (262)
...+.++..++++|....+.+++|| +.||.+=..|-..|..+..||+.
T Consensus 176 ~sEI~EID~KI~~L~~mR~~vl~RL---A~lEqdEl~LE~eL~~V~~Rief 223 (242)
T 3uux_B 176 LSEIRDIEVEVENLRQKKEKLLGKI---ANIEQNQLLLEDNLKQIDDRLDF 223 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhhHHHHHHHHHHHHHHHHH
Confidence 3567788888888888888888887 66777777888888888888873
No 131
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=59.83 E-value=16 Score=27.46 Aligned_cols=15 Identities=27% Similarity=0.302 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHH
Q 024834 137 LEAEVARLKCLLVDI 151 (262)
Q Consensus 137 LEaEn~rLRaqL~el 151 (262)
|..++..|+.++..|
T Consensus 71 L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 71 LRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 445555555555544
No 132
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=59.76 E-value=28 Score=26.33 Aligned_cols=47 Identities=23% Similarity=0.292 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhhh
Q 024834 111 ASLEDEVVRLRAVNQQLLKRLQG-QAALEAEVARLKCLLVDIRGRIEG 157 (262)
Q Consensus 111 eeLE~QV~qLraeNqqLl~rLq~-~a~LEaEn~rLRaqL~elrgri~~ 157 (262)
++||+.|.+|..--..|..|+.. .+..++--..||+.+..|..++..
T Consensus 3 ~dlEEKv~~LE~sld~LQTrfARLLaEy~ssQ~KLKqRit~LE~~~~~ 50 (74)
T 3swf_A 3 MGLEEKVTRMESSVDLLQTRFARILAEYESMQQKLKQRLTKVEKFLKP 50 (74)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 46888888888888888777643 223334445566666666555543
No 133
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=59.41 E-value=38 Score=27.51 Aligned_cols=25 Identities=4% Similarity=0.179 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhh
Q 024834 134 QAALEAEVARLKCLLVDIRGRIEGE 158 (262)
Q Consensus 134 ~a~LEaEn~rLRaqL~elrgri~~~ 158 (262)
+.....+|..|+..+.+|...|.-.
T Consensus 64 l~~R~~~Vs~lq~KiaeLKrqLAd~ 88 (113)
T 4fi5_A 64 LTDREGVAVSIQAKIDELKRQLADR 88 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667777777777776666543
No 134
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=59.28 E-value=42 Score=24.88 Aligned_cols=12 Identities=25% Similarity=0.329 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHH
Q 024834 136 ALEAEVARLKCL 147 (262)
Q Consensus 136 ~LEaEn~rLRaq 147 (262)
.+|+++..+|+.
T Consensus 37 ~lE~eL~~~r~e 48 (84)
T 1gk4_A 37 RLQDEIQNMKEE 48 (84)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344555444443
No 135
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=58.33 E-value=19 Score=35.03 Aligned_cols=62 Identities=8% Similarity=0.014 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhhhhhccccc
Q 024834 102 YREKKKARTASLEDEVVRLRAVNQQLLKRLQ-------GQAALEAEVARLKCLLVDIRGRIEGEIGSFP 163 (262)
Q Consensus 102 SR~RKQaHleeLE~QV~qLraeNqqLl~rLq-------~~a~LEaEn~rLRaqL~elrgri~~~iG~fp 163 (262)
-|+.-+..+++|.++.+.+..+..++.+.=. ....|..++..|..++.++...+...+-.+|
T Consensus 41 ~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~l~~iP 109 (485)
T 3qne_A 41 EWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSKINQVG 109 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3445566677777777777666655533211 1233444445555555555555554443433
No 136
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=57.90 E-value=72 Score=25.70 Aligned_cols=58 Identities=19% Similarity=0.269 Sum_probs=28.1
Q ss_pred ccCcccHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Q 024834 90 KRPLGNREAVRKYREKK-------KARTASLEDEVVRLRAVNQQLLKRLQ-------GQAALEAEVARLKCL 147 (262)
Q Consensus 90 KRmlsNRESARRSR~RK-------QaHleeLE~QV~qLraeNqqLl~rLq-------~~a~LEaEn~rLRaq 147 (262)
+|..+|+.|-+.--.+= |+|.+.|.++-.|.+.-++++.+--. ..--+|.|+++|+..
T Consensus 34 ~ri~~NtqaI~~NS~aiaanTr~lQqh~aRlnsqQrQI~ENhkEMKq~aaqsaaLlsk~yh~ene~ar~kkl 105 (114)
T 2xzr_A 34 GRVTRNTQSIEKNSKAIAANTRTLQQHSARLDSQQRQINENHKEMKQIEDKIEEILSKIYHIENEIARIKKL 105 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHhchHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 46677888776322222 22555555554444433333322111 122466777777654
No 137
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=57.62 E-value=17 Score=25.92 Aligned_cols=35 Identities=40% Similarity=0.512 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 108 ARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLK 145 (262)
Q Consensus 108 aHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLR 145 (262)
+.-+.||.-|++|+..|.-|.+-+ +.||.+++.|.
T Consensus 17 kenaklenivarlendnanlekdi---anlekdianle 51 (56)
T 3he4_A 17 KENAKLENIVARLENDNANLEKDI---ANLEKDIANLE 51 (56)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HhcchHHHHHHHHhcccchHHHHH---HHHHHHHHHHH
Confidence 445678888999999998887775 55666665554
No 138
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=55.84 E-value=21 Score=26.96 Aligned_cols=22 Identities=14% Similarity=0.078 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024834 110 TASLEDEVVRLRAVNQQLLKRL 131 (262)
Q Consensus 110 leeLE~QV~qLraeNqqLl~rL 131 (262)
|.+|..|+..|..+|.+|.-.+
T Consensus 2 i~eLr~qi~~l~~e~~~l~~e~ 23 (86)
T 3swk_A 2 MRELRRQVDQLTNDKARVEVER 23 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHH
Confidence 3456666666666665555444
No 139
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=55.83 E-value=18 Score=28.69 Aligned_cols=27 Identities=22% Similarity=0.288 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 107 KARTASLEDEVVRLRAVNQQLLKRLQG 133 (262)
Q Consensus 107 QaHleeLE~QV~qLraeNqqLl~rLq~ 133 (262)
.+..-..|.+|..|+.+..+|..+|..
T Consensus 10 ~~~~~~~e~e~~~l~~~~~el~~~l~~ 36 (125)
T 1joc_A 10 LERCLKGEGEIEKLQTKVLELQRKLDN 36 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 455666778888889888888888865
No 140
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=55.70 E-value=13 Score=31.74 Aligned_cols=38 Identities=21% Similarity=0.172 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhhh
Q 024834 119 RLRAVNQQLLKRLQ-------GQAALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 119 qLraeNqqLl~rLq-------~~a~LEaEn~rLRaqL~elrgri~ 156 (262)
.|....+++..||. +|+.+++++..||..+...+..++
T Consensus 80 ~lekKl~~aq~kL~~L~P~~P~Yak~~a~~~q~~~d~~~~~~~~~ 124 (158)
T 3tul_A 80 AATKKLTQAQNKLQSLDPADPGYAQAEAAVEQAGKEATEAKEALD 124 (158)
T ss_dssp HHHHHHHHHHHHHTTC-------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455554 488999999999999998887766
No 141
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=55.61 E-value=56 Score=26.83 Aligned_cols=18 Identities=33% Similarity=0.433 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 024834 136 ALEAEVARLKCLLVDIRG 153 (262)
Q Consensus 136 ~LEaEn~rLRaqL~elrg 153 (262)
.|+.|+..|..+|-+...
T Consensus 75 eLqgEI~~Lnq~Lq~a~a 92 (121)
T 3mq7_A 75 ELEGEITTLNHKLQDASA 92 (121)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345555555555554433
No 142
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=55.46 E-value=68 Score=24.55 Aligned_cols=44 Identities=18% Similarity=0.081 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024834 110 TASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 110 leeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrgri~ 156 (262)
+..++....++..+...|.+|+ ..||.|+..+...|.+...+++
T Consensus 32 ~k~~e~~~~~~E~Ei~sL~kk~---~~lE~eld~~ee~L~ea~~kLe 75 (101)
T 3u1c_A 32 KKAAEERSKQLEDDIVQLEKQL---RVTEDSRDQVLEELHKSEDSLL 75 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444443 3456666666655555544443
No 143
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=55.38 E-value=20 Score=26.88 Aligned_cols=25 Identities=4% Similarity=0.012 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 107 KARTASLEDEVVRLRAVNQQLLKRL 131 (262)
Q Consensus 107 QaHleeLE~QV~qLraeNqqLl~rL 131 (262)
...++.+...+..|.++..++...+
T Consensus 27 ~~~l~~~q~~i~~lE~el~~~r~e~ 51 (86)
T 1x8y_A 27 ARERDTSRRLLAEKEREMAEMRARM 51 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666655555554
No 144
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=54.41 E-value=63 Score=25.94 Aligned_cols=25 Identities=20% Similarity=0.145 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 108 ARTASLEDEVVRLRAVNQQLLKRLQ 132 (262)
Q Consensus 108 aHleeLE~QV~qLraeNqqLl~rLq 132 (262)
..|+.|-.+|..|+.+...|..+-+
T Consensus 15 ~~Ie~Lkreie~lk~ele~l~~E~q 39 (120)
T 3i00_A 15 HLIERLYREISGLKAQLENMKTESQ 39 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555544433
No 145
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=54.19 E-value=45 Score=30.84 Aligned_cols=44 Identities=32% Similarity=0.226 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024834 109 RTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRI 155 (262)
Q Consensus 109 HleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrgri 155 (262)
.+..||..|....++.+.|...|. .+++.+..|+.++.+|..++
T Consensus 13 ~~~~~e~~i~~~~~~i~~L~~~l~---~~~~~i~~l~~~i~~l~~~~ 56 (323)
T 1lwu_C 13 EVRILEQIGVSHDAQIQELSEMWR---VNQQFVTRLQQQLVDIRQTC 56 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555554442 34555666666666665544
No 146
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=54.14 E-value=41 Score=23.85 Aligned_cols=18 Identities=17% Similarity=0.180 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 024834 135 AALEAEVARLKCLLVDIR 152 (262)
Q Consensus 135 a~LEaEn~rLRaqL~elr 152 (262)
..|++++..|+.++..|+
T Consensus 40 ~~L~~~i~~L~~E~~~Lk 57 (63)
T 1ci6_A 40 EALKERADSLAKEIQYLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444443333
No 147
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=53.94 E-value=53 Score=25.79 Aligned_cols=39 Identities=28% Similarity=0.354 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024834 111 ASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 111 eeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrgri~ 156 (262)
.+|++|+++|..+.+.|..- ..+...||.+...|...|+
T Consensus 50 ~eL~~EI~~L~~eI~~LE~i-------qs~aK~LRnKA~~L~~eLe 88 (96)
T 1t3j_A 50 KHLEEEIARLSKEIDQLEKM-------QNNSKLLRNKAVQLESELE 88 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHhHHHHHHHHHHHHHHH
Confidence 45666666666666665444 3444555555554444443
No 148
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=53.67 E-value=53 Score=31.20 Aligned_cols=61 Identities=13% Similarity=0.172 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhhhhhccccc
Q 024834 103 REKKKARTASLEDEVVRLRAVNQQLLKR-------LQGQAALEAEVARLKCLLVDIRGRIEGEIGSFP 163 (262)
Q Consensus 103 R~RKQaHleeLE~QV~qLraeNqqLl~r-------Lq~~a~LEaEn~rLRaqL~elrgri~~~iG~fp 163 (262)
|+.-+..+++|.++.+.+..+..++.+. +.....|..++..|..++.++..++...+-.+|
T Consensus 40 ~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip 107 (455)
T 2dq0_A 40 WRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKIDYYLWRLP 107 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4444555555555555555555443221 011233445555555555556666665444444
No 149
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=53.49 E-value=55 Score=25.71 Aligned_cols=25 Identities=20% Similarity=0.266 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 99 VRKYREKKKARTASLEDEVVRLRAV 123 (262)
Q Consensus 99 ARRSR~RKQaHleeLE~QV~qLrae 123 (262)
+...+.-=+..+++|+.++.+|...
T Consensus 45 Vd~t~~eL~~EI~~L~~eI~~LE~i 69 (96)
T 1t3j_A 45 VDMTQKHLEEEIARLSKEIDQLEKM 69 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555555555443
No 150
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=53.43 E-value=18 Score=23.44 Aligned_cols=22 Identities=41% Similarity=0.616 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024834 111 ASLEDEVVRLRAVNQQLLKRLQ 132 (262)
Q Consensus 111 eeLE~QV~qLraeNqqLl~rLq 132 (262)
..||++|..|.+--+.|.+|+.
T Consensus 2 srlee~~r~l~~ivq~lq~r~d 23 (32)
T 2akf_A 2 SRLEEDVRNLNAIVQKLQERLD 23 (32)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHH
Confidence 3588888888888888877763
No 151
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=52.86 E-value=44 Score=25.08 Aligned_cols=18 Identities=11% Similarity=0.108 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 024834 138 EAEVARLKCLLVDIRGRI 155 (262)
Q Consensus 138 EaEn~rLRaqL~elrgri 155 (262)
+.++..|+.+-..|+.+|
T Consensus 65 ~~~~~~L~~~n~~L~~rl 82 (88)
T 1nkp_A 65 ISEEDLLRKRREQLKHKL 82 (88)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444443
No 152
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=52.76 E-value=38 Score=35.51 Aligned_cols=21 Identities=24% Similarity=0.305 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 024834 111 ASLEDEVVRLRAVNQQLLKRL 131 (262)
Q Consensus 111 eeLE~QV~qLraeNqqLl~rL 131 (262)
++|+.++..|+.+...+...+
T Consensus 881 ~ele~~l~~Le~e~~~l~~~L 901 (1184)
T 1i84_S 881 KELEQKHTQLCEEKNLLQEKL 901 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444333
No 153
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=52.00 E-value=11 Score=33.43 Aligned_cols=48 Identities=29% Similarity=0.292 Sum_probs=28.3
Q ss_pred HHHhhccCccc-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 85 EKKTKKRPLGN-------REAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQ 132 (262)
Q Consensus 85 d~RK~KRmlsN-------RESARRSR~RKQaHleeLE~QV~qLraeNqqLl~rLq 132 (262)
+-+|.||.+|= ||...--=....++.+++.+++++|+++|+.+..+|+
T Consensus 118 ~~~Rt~~iLSalINF~~FRE~~~~~~~e~~~~~e~~~~~i~ql~~En~~le~~Ie 172 (250)
T 2ve7_C 118 KAKRTSRFLSGIINFIHFREACRETYMEFLWQYKSSADKMQQLNAAHQEALMKLE 172 (250)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHSCC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666777653 3333333344455566666677777777777666664
No 154
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=51.24 E-value=82 Score=24.28 Aligned_cols=11 Identities=27% Similarity=0.190 Sum_probs=4.8
Q ss_pred HHHHHHHHHHH
Q 024834 136 ALEAEVARLKC 146 (262)
Q Consensus 136 ~LEaEn~rLRa 146 (262)
.++.+|..||.
T Consensus 64 ~lk~en~eL~e 74 (83)
T 1uii_A 64 RLKKENKELAE 74 (83)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34444444444
No 155
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=51.18 E-value=59 Score=29.70 Aligned_cols=12 Identities=33% Similarity=0.368 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q 024834 118 VRLRAVNQQLLK 129 (262)
Q Consensus 118 ~qLraeNqqLl~ 129 (262)
.+|+++|+.+.+
T Consensus 445 ~~~~~~~~~~~~ 456 (487)
T 3oja_A 445 TQLAEENARLKK 456 (487)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHhhhhhh
Confidence 333333333333
No 156
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=50.84 E-value=43 Score=26.16 Aligned_cols=16 Identities=38% Similarity=0.310 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 024834 136 ALEAEVARLKCLLVDI 151 (262)
Q Consensus 136 ~LEaEn~rLRaqL~el 151 (262)
.-|.|+.+||.+|...
T Consensus 72 ~YEeEI~rLr~eLe~r 87 (92)
T 3vp9_A 72 AYEEEIKHLKLGLEQR 87 (92)
T ss_dssp HHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHc
Confidence 4578999999987643
No 157
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=50.79 E-value=79 Score=23.95 Aligned_cols=16 Identities=19% Similarity=0.194 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 024834 136 ALEAEVARLKCLLVDI 151 (262)
Q Consensus 136 ~LEaEn~rLRaqL~el 151 (262)
.++.++..+...|.++
T Consensus 55 ~lE~eld~~~e~l~~a 70 (101)
T 3u59_A 55 GTEDEVEKYSESVKEA 70 (101)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444433
No 158
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=50.47 E-value=13 Score=29.20 Aligned_cols=13 Identities=23% Similarity=0.312 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 024834 137 LEAEVARLKCLLV 149 (262)
Q Consensus 137 LEaEn~rLRaqL~ 149 (262)
|...+..|+.+|.
T Consensus 21 l~~~~~~l~~~l~ 33 (182)
T 3kqg_A 21 LNTKIRALQGSLE 33 (182)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 159
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=50.47 E-value=23 Score=30.64 Aligned_cols=39 Identities=18% Similarity=0.148 Sum_probs=30.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 95 NREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQG 133 (262)
Q Consensus 95 NRESARRSR~RKQaHleeLE~QV~qLraeNqqLl~rLq~ 133 (262)
-.|+-|-.=..=-.++.+|.+++.+|+.+|+.|....+.
T Consensus 139 p~e~i~elid~~ld~~~~L~~~n~~LqkeNeRL~~E~n~ 177 (184)
T 3w03_C 139 PAEVIRELICYCLDTIAENQAKNEHLQKENERLLRDWND 177 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566667788999999999999999999887653
No 160
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=50.45 E-value=92 Score=30.16 Aligned_cols=23 Identities=22% Similarity=0.278 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 024834 105 KKKARTASLEDEVVRLRAVNQQL 127 (262)
Q Consensus 105 RKQaHleeLE~QV~qLraeNqqL 127 (262)
.-+..+++|+++.+++..+..++
T Consensus 81 ~~~~~~~~l~~~rn~~sk~i~~~ 103 (501)
T 1wle_A 81 QLREQIRSLEEEKEAVTEAVRAL 103 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555444443
No 161
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=50.08 E-value=79 Score=26.49 Aligned_cols=21 Identities=14% Similarity=0.158 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 024834 109 RTASLEDEVVRLRAVNQQLLK 129 (262)
Q Consensus 109 HleeLE~QV~qLraeNqqLl~ 129 (262)
+.+.++.+++.|+........
T Consensus 71 rEd~yEeqIk~L~~kLKEAE~ 91 (155)
T 2efr_A 71 KEDKYEEEIKVLSDKLKEAET 91 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444333333
No 162
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=49.69 E-value=54 Score=34.33 Aligned_cols=13 Identities=23% Similarity=0.255 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q 024834 109 RTASLEDEVVRLR 121 (262)
Q Consensus 109 HleeLE~QV~qLr 121 (262)
.++.|+.++..|+
T Consensus 886 ~l~~Le~e~~~l~ 898 (1184)
T 1i84_S 886 KHTQLCEEKNLLQ 898 (1184)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3344444443333
No 163
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=49.26 E-value=33 Score=26.51 Aligned_cols=36 Identities=19% Similarity=0.041 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 110 TASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLL 148 (262)
Q Consensus 110 leeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL 148 (262)
|.+-=.+-.+|..+..++...| +.|+.||..|+...
T Consensus 33 L~eaL~EN~~Lh~~ie~~~eEi---~~Lk~en~~L~elA 68 (83)
T 1wlq_A 33 LYEALKENEKLHKEIEQKDSEI---ARLRKENKDLAEVA 68 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 4444444455555555444443 55677777776543
No 164
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=48.81 E-value=26 Score=25.92 Aligned_cols=27 Identities=26% Similarity=0.313 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 105 KKKARTASLEDEVVRLRAVNQQLLKRL 131 (262)
Q Consensus 105 RKQaHleeLE~QV~qLraeNqqLl~rL 131 (262)
.|...+.+||..+..-.+++++|...|
T Consensus 22 ~Kde~I~eLE~~L~~kd~eI~eLr~~L 48 (67)
T 1zxa_A 22 LKEERIKELEKRLSEKEEEIQELKRKL 48 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666666555544444444433
No 165
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=48.75 E-value=45 Score=27.45 Aligned_cols=35 Identities=23% Similarity=0.102 Sum_probs=20.8
Q ss_pred hhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 88 TKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAV 123 (262)
Q Consensus 88 K~KRmlsNRESARRSR~RKQaHleeLE~QV~qLrae 123 (262)
++.+|..-|----|+-++++| .++|+.|..+..++
T Consensus 7 ~k~~mt~~Rk~~Lk~lll~kA-~e~l~kE~e~k~ee 41 (133)
T 1j1d_C 7 KKSKISASRKLQLKTLLLQIA-KQELEREAEERRGE 41 (133)
T ss_dssp SSCSSCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 445666666666666666665 35555555555554
No 166
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=48.08 E-value=54 Score=32.35 Aligned_cols=23 Identities=30% Similarity=0.244 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 024834 108 ARTASLEDEVVRLRAVNQQLLKR 130 (262)
Q Consensus 108 aHleeLE~QV~qLraeNqqLl~r 130 (262)
+-++++.++-+.+++||..+.+|
T Consensus 34 ~~~ae~~a~n~~i~aeNeaikkr 56 (497)
T 3iox_A 34 AAVAANNAANAALTAENTAIKKR 56 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHH
Confidence 33555555556666666666655
No 167
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=48.05 E-value=10 Score=26.24 Aligned_cols=21 Identities=24% Similarity=0.357 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 024834 107 KARTASLEDEVVRLRAVNQQL 127 (262)
Q Consensus 107 QaHleeLE~QV~qLraeNqqL 127 (262)
..++++||.+|+.|+...++|
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~l 68 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTNL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 367888888888887765544
No 168
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=47.82 E-value=56 Score=22.65 Aligned_cols=35 Identities=17% Similarity=0.160 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 97 EAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRL 131 (262)
Q Consensus 97 ESARRSR~RKQaHleeLE~QV~qLraeNqqLl~rL 131 (262)
|-|-||=.|-++.+++||+++..-+..+..+...|
T Consensus 8 efAERsV~KLek~ID~LEdeL~~eKek~~~i~~eL 42 (52)
T 2z5i_A 8 YHLENEVARLKKLVDDLEDELYAQKLKYKAISEEL 42 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 44555666666666666666555555444444433
No 169
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=46.84 E-value=39 Score=25.53 Aligned_cols=20 Identities=10% Similarity=0.243 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 024834 109 RTASLEDEVVRLRAVNQQLL 128 (262)
Q Consensus 109 HleeLE~QV~qLraeNqqLl 128 (262)
-|+.|+..|.+|+..+..++
T Consensus 20 ~i~~i~~~v~~l~~~~~~~L 39 (127)
T 1ez3_A 20 FIDKIAENVEEVKRKHSAIL 39 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555443
No 170
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=46.43 E-value=12 Score=34.67 Aligned_cols=45 Identities=9% Similarity=0.131 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024834 109 RTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 109 HleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrgri~ 156 (262)
.|..||.+|..++++.+.|...| ..+++++..|+.++..|..++.
T Consensus 5 ~~~~lE~~Il~~~~~i~~L~~~l---~~~~~ki~~L~~~i~~l~~~~~ 49 (319)
T 1fzc_C 5 EIMKYEASILTHDSSIRYLQEIY---NSNNQKIVNLKEKVAQLEAQCQ 49 (319)
T ss_dssp -----CTTTTTHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhhChHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhh
Confidence 45566667777766666666655 3456777777777777766544
No 171
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=46.15 E-value=95 Score=23.88 Aligned_cols=40 Identities=28% Similarity=0.209 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 108 ARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVD 150 (262)
Q Consensus 108 aHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~e 150 (262)
+.+.+|.-.|..|..+..|..++|. +-.+|++.|+.+|..
T Consensus 26 qEi~~Lr~kv~elEnErlQyEkKLK---sTK~El~~Lq~qLe~ 65 (81)
T 3qh9_A 26 QELRHLKIKVEELENERNQYEWKLK---ATKAEVAQLQEQVAL 65 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHh
Confidence 3455555566666666666666663 334677777777665
No 172
>1a93_A Coiled coil, LZ, MYC proto-oncogene protein; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Homo sapiens} SCOP: h.1.3.1 PDB: 2a93_A
Probab=46.08 E-value=36 Score=22.35 Aligned_cols=25 Identities=32% Similarity=0.307 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 108 ARTASLEDEVVRLRAVNQQLLKRLQ 132 (262)
Q Consensus 108 aHleeLE~QV~qLraeNqqLl~rLq 132 (262)
+.-..|-.+.++|+..+++|+++|.
T Consensus 7 ~dE~kLl~ekE~l~~r~eqL~~kLe 31 (34)
T 1a93_A 7 AEEQKLISEEDLLRKRREQLKHKLE 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445678888999999999999985
No 173
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=46.06 E-value=28 Score=24.27 Aligned_cols=21 Identities=10% Similarity=0.075 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 024834 110 TASLEDEVVRLRAVNQQLLKR 130 (262)
Q Consensus 110 leeLE~QV~qLraeNqqLl~r 130 (262)
|+++...+..|..+|..|..+
T Consensus 29 Ld~v~~~~~~l~~e~~~L~~~ 49 (57)
T 2wuj_A 29 LAQVRKDYEIVLRKKTELEAK 49 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444333
No 174
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=45.83 E-value=27 Score=24.42 Aligned_cols=21 Identities=19% Similarity=0.257 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 024834 135 AALEAEVARLKCLLVDIRGRI 155 (262)
Q Consensus 135 a~LEaEn~rLRaqL~elrgri 155 (262)
..|+.+|..|+.++..|+..+
T Consensus 32 ~~L~~~n~~L~~~v~~L~~e~ 52 (62)
T 1jnm_A 32 KTLKAQNSELASTANMLREQV 52 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445556666665555555443
No 175
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=45.53 E-value=43 Score=33.36 Aligned_cols=32 Identities=22% Similarity=0.268 Sum_probs=17.1
Q ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 024834 97 EAVRKYREK---KKARTASLEDEVVRLRAVNQQLL 128 (262)
Q Consensus 97 ESARRSR~R---KQaHleeLE~QV~qLraeNqqLl 128 (262)
||+.+.|.+ +-..+++|+.++.+|+.+...|.
T Consensus 387 ea~a~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~ 421 (854)
T 1qvr_A 387 EAAARLRMALESAPEEIDALERKKLQLEIEREALK 421 (854)
T ss_dssp HHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHH
Confidence 444444443 34556666666666665554443
No 176
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=45.45 E-value=90 Score=27.68 Aligned_cols=13 Identities=31% Similarity=0.268 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHH
Q 024834 135 AALEAEVARLKCL 147 (262)
Q Consensus 135 a~LEaEn~rLRaq 147 (262)
+.|+.||..||..
T Consensus 132 ~~LkeEn~eLkeL 144 (209)
T 2wvr_A 132 ARLKKENKELAEV 144 (209)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4455555555543
No 177
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=45.28 E-value=63 Score=25.02 Aligned_cols=38 Identities=24% Similarity=0.264 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024834 116 EVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 116 QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrgri~ 156 (262)
|...|+.++.+|...+ ..|..|++++..++..+..+++
T Consensus 49 q~~~LE~e~~~L~~e~---~~L~~e~~~~~~e~d~~k~k~~ 86 (90)
T 2wt7_B 49 QKHHLENEKTQLIQQV---EQLKQEVSRLARERDAYKVKSE 86 (90)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555554443 3455555555555555555544
No 178
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=44.98 E-value=37 Score=26.08 Aligned_cols=40 Identities=18% Similarity=0.190 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhh
Q 024834 116 EVVRLRAVNQQLLKRLQGQAALEAEVARL--KCLLVDIRGRI 155 (262)
Q Consensus 116 QV~qLraeNqqLl~rLq~~a~LEaEn~rL--RaqL~elrgri 155 (262)
=+..|+.+++++.+.......+|..|..| |-|-.++..|+
T Consensus 40 YI~~Lq~e~~r~~e~e~r~k~le~~n~~l~~riqELE~qa~~ 81 (83)
T 4ath_A 40 YIRKLQREQQRAKDLENRQKKLEHANRHLLLRVQELEMQARA 81 (83)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 34455666666666656667788888776 44444555554
No 179
>3umh_A Amyloid beta A4 protein; metal binding site, metal binding, cell surface, secretory P metal binding protein; 2.00A {Homo sapiens} SCOP: a.47.4.1 PDB: 3umi_A 3umk_A 1rw6_A 3nyl_A 3nyj_A 1tkn_A
Probab=44.83 E-value=42 Score=29.71 Aligned_cols=55 Identities=24% Similarity=0.250 Sum_probs=39.8
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHH-HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 024834 97 EAVRKYREKK-KARTASLEDEVVRLR-AVNQQLLKRLQG-QAALEAEVARLKCLLVDI 151 (262)
Q Consensus 97 ESARRSR~RK-QaHleeLE~QV~qLr-aeNqqLl~rLq~-~a~LEaEn~rLRaqL~el 151 (262)
|.-.|.|+-| -+..+++|.+++.|. ++.+.|..+.|. ..+||.|++.-|.+|++.
T Consensus 31 e~~hr~k~~~VmkEW~eae~q~k~l~kadkk~~~~rFQ~~v~aLE~E~~~ErqqL~et 88 (211)
T 3umh_A 31 EAKHRERMSQVMREWEEAERQAKNLPKADKKAVIQHFQEKVESLEQEAANERQQLVET 88 (211)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 5555555444 456788888876663 466677777764 678999999999999874
No 180
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=44.78 E-value=81 Score=23.24 Aligned_cols=37 Identities=32% Similarity=0.329 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Q 024834 110 TASLEDEVVRLRAVNQQLLKRLQ----GQAALEAEVARLKC 146 (262)
Q Consensus 110 leeLE~QV~qLraeNqqLl~rLq----~~a~LEaEn~rLRa 146 (262)
+.--|++|.+|-..|..|-.+|. ....|..||..||.
T Consensus 22 LaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr~ 62 (63)
T 2w6a_A 22 LATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLRQ 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence 45557777777777777776654 23456677777663
No 181
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=44.60 E-value=51 Score=33.04 Aligned_cols=12 Identities=17% Similarity=0.263 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHH
Q 024834 112 SLEDEVVRLRAV 123 (262)
Q Consensus 112 eLE~QV~qLrae 123 (262)
+||.++..|+.+
T Consensus 114 ELRRrIqyLKek 125 (562)
T 3ghg_A 114 DLRSRIEVLKRK 125 (562)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 182
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=44.40 E-value=59 Score=27.38 Aligned_cols=47 Identities=15% Similarity=0.200 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhh
Q 024834 109 RTASLEDEVVRLRAVNQQLLKRLQG----QAALEAEVARLKCLLVDIRGRI 155 (262)
Q Consensus 109 HleeLE~QV~qLraeNqqLl~rLq~----~a~LEaEn~rLRaqL~elrgri 155 (262)
++..|+.+++....+...|..+|.. -...|.+...+..+|.+|..-|
T Consensus 45 ~~~~l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasL 95 (154)
T 2ocy_A 45 DYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASL 95 (154)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555666666555543 2233445555566666665544
No 183
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=44.05 E-value=1.2e+02 Score=30.53 Aligned_cols=18 Identities=22% Similarity=0.263 Sum_probs=11.5
Q ss_pred HHH-HHHHHHHHHHHHHHH
Q 024834 116 EVV-RLRAVNQQLLKRLQG 133 (262)
Q Consensus 116 QV~-qLraeNqqLl~rLq~ 133 (262)
||. +||...+.|..+|+.
T Consensus 110 E~S~ELRRrIqyLKekVdn 128 (562)
T 3ghg_A 110 RVSEDLRSRIEVLKRKVIE 128 (562)
T ss_dssp HTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 444 666777777777754
No 184
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=43.95 E-value=51 Score=21.29 Aligned_cols=10 Identities=60% Similarity=0.700 Sum_probs=4.2
Q ss_pred HHHHHHHHHH
Q 024834 136 ALEAEVARLK 145 (262)
Q Consensus 136 ~LEaEn~rLR 145 (262)
+|.-|++.|+
T Consensus 20 alkfeiaalk 29 (33)
T 4dzn_A 20 ALKFEIAALK 29 (33)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3344444443
No 185
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=43.61 E-value=99 Score=25.13 Aligned_cols=52 Identities=23% Similarity=0.267 Sum_probs=33.0
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024834 97 EAVRK-YREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGR 154 (262)
Q Consensus 97 ESARR-SR~RKQaHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrgr 154 (262)
+...+ .=.+|++-..++|.||++++..-..+++.+ |+|..+-+..+..+..+
T Consensus 49 d~~~K~HE~kklqLkse~e~E~ae~k~KYD~~lqe~------ese~~~kkK~le~~~~k 101 (115)
T 3vem_A 49 ENSKKTFEEKKSILKAELERKMAEVQAEFRRKFHEV------EAEHNTRTTKIEKDKNL 101 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH
Confidence 33443 344566666789999999999988887775 44444444444444433
No 186
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=43.19 E-value=91 Score=28.33 Aligned_cols=22 Identities=32% Similarity=0.462 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 024834 135 AALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 135 a~LEaEn~rLRaqL~elrgri~ 156 (262)
..||+|+..|.++|.+++..|+
T Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~ 467 (471)
T 3mq9_A 446 EELEGEITTLNHKLQDASAEVE 467 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777777766655
No 187
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=43.12 E-value=71 Score=30.03 Aligned_cols=36 Identities=36% Similarity=0.402 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 111 ASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLV 149 (262)
Q Consensus 111 eeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~ 149 (262)
..|++|+..|+.+..+|.++++ .+.+|+..|+++|.
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~---~~~~~~~~~~~~l~ 41 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNE---QQAAELETCKEQLF 41 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 6788888888888877777764 33444444444443
No 188
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=42.61 E-value=91 Score=30.21 Aligned_cols=29 Identities=10% Similarity=-0.087 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 101 KYREKKKARTASLEDEVVRLRAVNQQLLK 129 (262)
Q Consensus 101 RSR~RKQaHleeLE~QV~qLraeNqqLl~ 129 (262)
.-|+.-+..+++|.++.+.+..+..++.+
T Consensus 44 ~~~r~~~~~~~~l~~~rN~~sk~i~~~~~ 72 (484)
T 3lss_A 44 KKWRRTQFLTEASKKLINICSKAVGAKKK 72 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555567777777777777776666544
No 189
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=42.01 E-value=61 Score=23.96 Aligned_cols=16 Identities=6% Similarity=0.179 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHhh
Q 024834 139 AEVARLKCLLVDIRGR 154 (262)
Q Consensus 139 aEn~rLRaqL~elrgr 154 (262)
.|...|+.+...|+.+
T Consensus 61 ~e~~~L~~e~~~L~~~ 76 (80)
T 1nlw_A 61 HQIDQLQREQRHLKRQ 76 (80)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 190
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=41.67 E-value=57 Score=28.93 Aligned_cols=21 Identities=24% Similarity=0.447 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 024834 108 ARTASLEDEVVRLRAVNQQLL 128 (262)
Q Consensus 108 aHleeLE~QV~qLraeNqqLl 128 (262)
..++.|+++++.|+.+|.+|.
T Consensus 122 ~~ie~l~eEi~~LkeEn~eLk 142 (209)
T 2wvr_A 122 KEIEQKDNEIARLKKENKELA 142 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666665553
No 191
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=41.32 E-value=57 Score=26.23 Aligned_cols=30 Identities=20% Similarity=0.205 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 103 REKKKARTASLEDEVVRLRAVNQQLLKRLQ 132 (262)
Q Consensus 103 R~RKQaHleeLE~QV~qLraeNqqLl~rLq 132 (262)
|++.++..+.++.++++|+.+-+.|.++++
T Consensus 133 ~~~~~~~~~~l~~~i~~L~~~l~~le~~~~ 162 (166)
T 3pjs_K 133 RHSEKAAEEAYTRTTRALHERFDRLERMLD 162 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334455666777777777777777666654
No 192
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=41.04 E-value=1.1e+02 Score=27.90 Aligned_cols=10 Identities=50% Similarity=0.581 Sum_probs=5.1
Q ss_pred HHHHHHHHHH
Q 024834 134 QAALEAEVAR 143 (262)
Q Consensus 134 ~a~LEaEn~r 143 (262)
++.||++++.
T Consensus 431 ~~~~~~~~~~ 440 (471)
T 3mq9_A 431 MASLDAEKAQ 440 (471)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4455555544
No 193
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=40.77 E-value=1.2e+02 Score=29.95 Aligned_cols=15 Identities=20% Similarity=0.288 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHhh
Q 024834 140 EVARLKCLLVDIRGR 154 (262)
Q Consensus 140 En~rLRaqL~elrgr 154 (262)
+...|+.++.+|+.+
T Consensus 568 ~~~~~~~ei~~l~~~ 582 (592)
T 1f5n_A 568 ESRIMKNEIQDLQTK 582 (592)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 344455555555444
No 194
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=40.73 E-value=41 Score=26.41 Aligned_cols=9 Identities=44% Similarity=0.530 Sum_probs=4.3
Q ss_pred hHHHHHhcc
Q 024834 28 SFFEDILKD 36 (262)
Q Consensus 28 ~~~d~~l~~ 36 (262)
|-+.-+|++
T Consensus 27 SkLT~lL~d 35 (117)
T 3kin_B 27 SKMTRILQD 35 (117)
T ss_dssp SHHHHHTHH
T ss_pred hHHHHHHHH
Confidence 344455554
No 195
>3p8c_F ABL interactor 2; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=40.66 E-value=1.7e+02 Score=24.81 Aligned_cols=62 Identities=15% Similarity=0.247 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh-hhccccccccccCC----CCCCCCCCCCCccccCCCCCcCCcc
Q 024834 134 QAALEAEVARLKCLLVDIRGRIE-GEIGSFPYQKSVNN----MNLPNPHSAGAYVVNPCNMRCDDQV 195 (262)
Q Consensus 134 ~a~LEaEn~rLRaqL~elrgri~-~~iG~fp~qk~~~~----~~~~~~~~~g~~~mNp~n~~c~~~~ 195 (262)
...+|..+..|.+.+..-..++. .+||+|-..+..+- ....++..+--|+=.|.|+.++|.+
T Consensus 84 l~~mes~v~~l~Q~v~ih~EKvaRreIg~lT~~k~~~r~~kii~p~~~e~~~~Y~R~pI~y~~LD~i 150 (159)
T 3p8c_F 84 LRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSRTHKIIAPANLERPVRYIRKPIDYTILDDI 150 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCCCCSEECCSSCCCCCCCCCCCCCTTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCcCcccCCCCCCCCCCCccCCCchHhhcCC
Confidence 45678888888777666566665 67888754433221 1112223334577789999999876
No 196
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=40.22 E-value=1.6e+02 Score=28.63 Aligned_cols=53 Identities=9% Similarity=0.069 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHhhhh
Q 024834 104 EKKKARTASLEDEVVRLRAVNQQLLKRLQG---------QAALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 104 ~RKQaHleeLE~QV~qLraeNqqLl~rLq~---------~a~LEaEn~rLRaqL~elrgri~ 156 (262)
..+|..+.+++..|.+++.+.+++...|+. ...|+..+..|+.++..|...|.
T Consensus 131 k~~Q~Qi~en~n~~~~~~~~~e~~~~~i~~~~~~~~~~~i~~L~~~~~~l~~ki~~l~~~~~ 192 (464)
T 1m1j_B 131 VKTQKQRKDNDIILSEYNTEMELHYNYIKDNLDNNIPSSLRVLRAVIDSLHKKIQKLENAIA 192 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccccccchhhHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556665565555554444443332 22344455555555555555444
No 197
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=40.15 E-value=83 Score=23.46 Aligned_cols=13 Identities=15% Similarity=0.128 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHh
Q 024834 141 VARLKCLLVDIRG 153 (262)
Q Consensus 141 n~rLRaqL~elrg 153 (262)
...|+.++.++..
T Consensus 73 l~~l~~~i~~l~~ 85 (112)
T 1l8d_A 73 LNNSKNTLAKLID 85 (112)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333443
No 198
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=39.15 E-value=84 Score=21.71 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhh
Q 024834 134 QAALEAEVARLKCLLVDIRGRIEG 157 (262)
Q Consensus 134 ~a~LEaEn~rLRaqL~elrgri~~ 157 (262)
.++||.|+..|...++.+..++..
T Consensus 22 laaleselqalekklaalksklqa 45 (48)
T 1g6u_A 22 LAALESELQALEKKLAALKSKLQA 45 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777777777666653
No 199
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=38.80 E-value=50 Score=21.08 Aligned_cols=21 Identities=29% Similarity=0.355 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 024834 111 ASLEDEVVRLRAVNQQLLKRL 131 (262)
Q Consensus 111 eeLE~QV~qLraeNqqLl~rL 131 (262)
+.|..-++.|+++|.||..++
T Consensus 2 dqlnallasleaenkqlkakv 22 (31)
T 1p9i_A 2 DQLNALLASLEAENKQLKAKV 22 (31)
T ss_dssp -CHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666665554
No 200
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=38.65 E-value=1.4e+02 Score=23.42 Aligned_cols=21 Identities=29% Similarity=0.396 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 024834 112 SLEDEVVRLRAVNQQLLKRLQ 132 (262)
Q Consensus 112 eLE~QV~qLraeNqqLl~rLq 132 (262)
+|+.+...|..+...|...|+
T Consensus 38 ele~~~~~l~~Ek~~L~~qL~ 58 (129)
T 2fxo_A 38 ELEEKMVSLLQEKNDLQLQVQ 58 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444443
No 201
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=38.52 E-value=1.4e+02 Score=23.40 Aligned_cols=16 Identities=38% Similarity=0.426 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 024834 136 ALEAEVARLKCLLVDI 151 (262)
Q Consensus 136 ~LEaEn~rLRaqL~el 151 (262)
.++.++..|+.++.++
T Consensus 108 kle~e~~~Lk~~led~ 123 (129)
T 2fxo_A 108 KLEDECSELKRDIDDL 123 (129)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444555555555444
No 202
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=38.38 E-value=1.6e+02 Score=25.21 Aligned_cols=38 Identities=16% Similarity=0.346 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Q 024834 112 SLEDEVVRLRAVNQQLLKRLQG----QAALEAEVARLKCLLV 149 (262)
Q Consensus 112 eLE~QV~qLraeNqqLl~rLq~----~a~LEaEn~rLRaqL~ 149 (262)
+|...+..+...+..|..++.. -..|+.|+..|.++|.
T Consensus 38 El~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~ 79 (168)
T 3o0z_A 38 EMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILE 79 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443321 2345555555555444
No 203
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=38.35 E-value=1.6e+02 Score=23.79 Aligned_cols=29 Identities=14% Similarity=0.132 Sum_probs=23.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 95 NREAVRKYREKKKARTASLEDEVVRLRAV 123 (262)
Q Consensus 95 NRESARRSR~RKQaHleeLE~QV~qLrae 123 (262)
|=.+|-..=..|+..+++|..++.++++.
T Consensus 32 ~L~~AEeaL~~Kq~~idelk~ei~q~~~~ 60 (110)
T 2v4h_A 32 QLQQAEEALVAKQELIDKLKEEAEQHKIV 60 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566677777999999999999998883
No 204
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=38.34 E-value=1.4e+02 Score=23.46 Aligned_cols=53 Identities=23% Similarity=0.205 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Q 024834 97 EAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRL----QGQAALEAEVARLKCLLV 149 (262)
Q Consensus 97 ESARRSR~RKQaHleeLE~QV~qLraeNqqLl~rL----q~~a~LEaEn~rLRaqL~ 149 (262)
|++|--..+=+..+...+.++.+|..+-..-..+- .....++.|+.-|-+.|.
T Consensus 8 e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLF 64 (97)
T 2eqb_B 8 NQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLF 64 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444455555566555554332221111 113345555555554444
No 205
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=38.31 E-value=68 Score=31.14 Aligned_cols=16 Identities=25% Similarity=0.187 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHhh
Q 024834 139 AEVARLKCLLVDIRGR 154 (262)
Q Consensus 139 aEn~rLRaqL~elrgr 154 (262)
+|+..|+.++.++...
T Consensus 78 ~~~~~l~~~i~~le~~ 93 (485)
T 3qne_A 78 AEKEKLSNEKKEIIEK 93 (485)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444433
No 206
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=38.24 E-value=1.3e+02 Score=27.38 Aligned_cols=18 Identities=39% Similarity=0.209 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 024834 137 LEAEVARLKCLLVDIRGR 154 (262)
Q Consensus 137 LEaEn~rLRaqL~elrgr 154 (262)
++.|+++|+-++.++...
T Consensus 447 ~~~~~~~~~~~~~~~~~~ 464 (487)
T 3oja_A 447 LAEENARLKKLNGEADLA 464 (487)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhhhhhhhhh
Confidence 344555555544444333
No 207
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=38.10 E-value=1.8e+02 Score=26.99 Aligned_cols=22 Identities=18% Similarity=0.134 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhc
Q 024834 138 EAEVARLKCLLVDIRGRIEGEI 159 (262)
Q Consensus 138 EaEn~rLRaqL~elrgri~~~i 159 (262)
|.+...+|.++...+.+|+..|
T Consensus 78 Ere~~~~Rd~~a~~k~~Le~~i 99 (302)
T 3ibp_A 78 EREAIVERDEVGARKNAVDEEI 99 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666555555443
No 208
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=37.92 E-value=1.2e+02 Score=26.48 Aligned_cols=43 Identities=14% Similarity=0.213 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 102 YREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARL 144 (262)
Q Consensus 102 SR~RKQaHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rL 144 (262)
..+||.+-++.|..++.-|+++-+.|...++.+.++-++|..+
T Consensus 13 i~~Kk~ELi~~L~~kL~~L~~eqe~l~ee~~~N~~lG~~vea~ 55 (190)
T 3thf_A 13 IKQKMDELIKHLNQKIVSLKREQQTISEECSANDRLGQDLFAK 55 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 4578888999999999999999999999998777776666554
No 209
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=37.27 E-value=1.8e+02 Score=24.33 Aligned_cols=24 Identities=21% Similarity=0.134 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhh
Q 024834 134 QAALEAEVARLKCLLVDIRGRIEG 157 (262)
Q Consensus 134 ~a~LEaEn~rLRaqL~elrgri~~ 157 (262)
.+.+|..|..|+.++.+-..+|+.
T Consensus 110 ~~~~e~r~~~L~~ql~e~~~~l~~ 133 (154)
T 2ocy_A 110 KYAIEILNKRLTEQLREKDTLLDT 133 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556778888898988887777663
No 210
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=37.12 E-value=42 Score=22.60 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 024834 106 KKARTASLEDEVVRLRAVNQQLL 128 (262)
Q Consensus 106 KQaHleeLE~QV~qLraeNqqLl 128 (262)
-+.++..|+.++..|+.+..||.
T Consensus 13 tkeQi~~l~~kl~~LkeEKHQLF 35 (38)
T 2l5g_A 13 TKEQILKLEEKLLALQEEKHQLF 35 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777664
No 211
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=36.94 E-value=1.1e+02 Score=21.48 Aligned_cols=34 Identities=32% Similarity=0.410 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 112 SLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLL 148 (262)
Q Consensus 112 eLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL 148 (262)
.|...--+|+..-+-|.+-+ +.|..|+++|..++
T Consensus 14 rlkkdnlqlerdeqnlekii---anlrdeiarlenev 47 (52)
T 3he5_B 14 RLKKDNLQLERDEQNLEKII---ANLRDEIARLENEV 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHhhhhhhhhhhHhhHHHHH---HHHHHHHHHHHHHH
Confidence 33344444555555555443 45566666665554
No 212
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=36.89 E-value=1.1e+02 Score=24.59 Aligned_cols=14 Identities=7% Similarity=0.190 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHH
Q 024834 134 QAALEAEVARLKCL 147 (262)
Q Consensus 134 ~a~LEaEn~rLRaq 147 (262)
...+++.++.|-+.
T Consensus 78 MKq~aaqsaaLlsk 91 (114)
T 2xzr_A 78 MKQIEDKIEEILSK 91 (114)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444333
No 213
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=36.80 E-value=46 Score=31.18 Aligned_cols=30 Identities=20% Similarity=0.306 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhccccc
Q 024834 134 QAALEAEVARLKCLLVDIRGRIEGEIGSFP 163 (262)
Q Consensus 134 ~a~LEaEn~rLRaqL~elrgri~~~iG~fp 163 (262)
...|..++..|..++.++...+...+-.+|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip 106 (425)
T 2dq3_A 77 VKELKEEIDRLEEELRKVEEELKNTLLWIP 106 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 345566666677777777777665443433
No 214
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=36.58 E-value=96 Score=36.81 Aligned_cols=30 Identities=13% Similarity=0.221 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 98 AVRKYREKKKARTASLEDEVVRLRAVNQQL 127 (262)
Q Consensus 98 SARRSR~RKQaHleeLE~QV~qLraeNqqL 127 (262)
.|...=..+++.+++|++++++|+++-+.+
T Consensus 2025 ~~~~~L~~~~~~L~~le~~l~~L~~~~~~~ 2054 (3245)
T 3vkg_A 2025 ELKLKQDEIVATITALEKSIATYKEEYATL 2054 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444556666777777766666654443
No 215
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=36.55 E-value=82 Score=27.19 Aligned_cols=37 Identities=22% Similarity=0.095 Sum_probs=21.9
Q ss_pred hhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 88 TKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQ 125 (262)
Q Consensus 88 K~KRmlsNRESARRSR~RKQaHleeLE~QV~qLraeNq 125 (262)
++.+|..-|----|+-++++| .++|+.|..+..++-.
T Consensus 7 kk~~mt~~Rk~~Lk~lll~kA-~e~L~~E~e~k~eEKk 43 (180)
T 1j1e_C 7 KKSKISASRKLQLKTLLLQIA-KQELEREAEERRGEKG 43 (180)
T ss_dssp CCCSSCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 455666666666667666665 3556666555555533
No 216
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=36.49 E-value=91 Score=24.65 Aligned_cols=26 Identities=23% Similarity=0.413 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhcccc
Q 024834 136 ALEAEVARLKCLLVDIRGRIEGEIGSF 162 (262)
Q Consensus 136 ~LEaEn~rLRaqL~elrgri~~~iG~f 162 (262)
.||..+.+-.-++.+|+.||..- |-|
T Consensus 67 DlE~kv~kq~yEI~eL~~rV~dl-gKf 92 (107)
T 1ytz_T 67 DFAEQIKRKKYEIVTLRNRIDQA-QKH 92 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT-CCC
T ss_pred hHHHHHHhhhhHHHHHHHHHHHh-cCc
Confidence 34444555555556666666543 443
No 217
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=36.45 E-value=1.5e+02 Score=23.19 Aligned_cols=25 Identities=12% Similarity=0.190 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 107 KARTASLEDEVVRLRAVNQQLLKRL 131 (262)
Q Consensus 107 QaHleeLE~QV~qLraeNqqLl~rL 131 (262)
+.+++.|..++..|+..-......+
T Consensus 17 e~e~~~l~~~~~el~~~l~~~~~~~ 41 (125)
T 1joc_A 17 EGEIEKLQTKVLELQRKLDNTTAAV 41 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467777777777776665554444
No 218
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=35.96 E-value=1.5e+02 Score=22.80 Aligned_cols=51 Identities=20% Similarity=0.230 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHhhhhhh
Q 024834 108 ARTASLEDEVVRLRAVN----QQLLKRLQG-----------QAALEAEVARLKCLLVDIRGRIEGE 158 (262)
Q Consensus 108 aHleeLE~QV~qLraeN----qqLl~rLq~-----------~a~LEaEn~rLRaqL~elrgri~~~ 158 (262)
..|++||..|.-+-... +.|..-|+. .+.|-++|..+|.+-..++..+-+.
T Consensus 26 ~~IeelE~~L~s~s~~~~~Tpq~L~~~l~~~h~~FiaLAa~l~~lH~~V~~~Ke~Yl~~rr~~~~d 91 (93)
T 3t98_B 26 QQIEELENHLATQANNSHITPQDLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQYLSYRKMFLGD 91 (93)
T ss_dssp HHHHHHHHHHSCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45677777665543210 234443431 3456677888888877777665443
No 219
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=35.86 E-value=50 Score=22.98 Aligned_cols=22 Identities=9% Similarity=0.135 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 024834 133 GQAALEAEVARLKCLLVDIRGR 154 (262)
Q Consensus 133 ~~a~LEaEn~rLRaqL~elrgr 154 (262)
.+..|..||..|+.++..+..+
T Consensus 35 ~~~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 35 DYEIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp HHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3556667777777776666554
No 220
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=35.82 E-value=1.3e+02 Score=29.14 Aligned_cols=18 Identities=6% Similarity=0.250 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 024834 114 EDEVVRLRAVNQQLLKRL 131 (262)
Q Consensus 114 E~QV~qLraeNqqLl~rL 131 (262)
..++..|+++..++-+.|
T Consensus 83 ~~~~~~l~~~rn~~sk~i 100 (501)
T 1wle_A 83 REQIRSLEEEKEAVTEAV 100 (501)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344455555555555554
No 221
>2rjz_A PILO protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Pseudomonas aeruginosa}
Probab=35.70 E-value=21 Score=28.85 Aligned_cols=28 Identities=14% Similarity=0.205 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 105 KKKARTASLEDEVVRLRAVNQQLLKRLQ 132 (262)
Q Consensus 105 RKQaHleeLE~QV~qLraeNqqLl~rLq 132 (262)
+|.+.++.|+.|+++|+.+..++++.|=
T Consensus 12 ~~aa~L~~l~~ql~~l~~~l~~l~~~LP 39 (147)
T 2rjz_A 12 FQAANLEAYKAQMKEMEESFGALLRQLP 39 (147)
T ss_dssp GGCSSHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4467788999999999999988888874
No 222
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=35.69 E-value=1.2e+02 Score=21.57 Aligned_cols=21 Identities=10% Similarity=0.116 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 024834 135 AALEAEVARLKCLLVDIRGRI 155 (262)
Q Consensus 135 a~LEaEn~rLRaqL~elrgri 155 (262)
..|+.||..|+.++..|+..+
T Consensus 40 ~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 40 EELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777776654
No 223
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=35.62 E-value=77 Score=24.41 Aligned_cols=27 Identities=19% Similarity=0.154 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 105 KKKARTASLEDEVVRLRAVNQQLLKRL 131 (262)
Q Consensus 105 RKQaHleeLE~QV~qLraeNqqLl~rL 131 (262)
.+++..+.|+.++++|..+-+.|.+++
T Consensus 108 ~~~~~~~~l~~~~~~l~~~l~~le~~~ 134 (139)
T 3eff_K 108 SEKAAEEAYTRTTRALHERFDRLERML 134 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445667777777777666666554
No 224
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=35.46 E-value=1.3e+02 Score=21.93 Aligned_cols=45 Identities=22% Similarity=0.234 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 024834 110 TASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIEG 157 (262)
Q Consensus 110 leeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrgri~~ 157 (262)
+.+.+....++..+...|.+++ ..||.++.++...|.+...+|..
T Consensus 29 l~~~e~~~~~~E~ev~~L~kKi---q~lE~eld~~ee~l~~a~~kLee 73 (81)
T 1ic2_A 29 KKAAEERSKQLEDELVALQKKL---KGTEDELDKYSESLKDAQEKLEL 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444443 45677777777777777666653
No 225
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=35.43 E-value=91 Score=22.95 Aligned_cols=46 Identities=9% Similarity=0.055 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 024834 114 EDEVVRLRAVNQQLLKRLQ---------GQAALEAEVARLKCLLVDIRGRIEGEI 159 (262)
Q Consensus 114 E~QV~qLraeNqqLl~rLq---------~~a~LEaEn~rLRaqL~elrgri~~~i 159 (262)
-.+..+|+.|..+|...++ ..+.|...+..|..++..+...|..+.
T Consensus 5 ~~~~~~l~~E~~~lk~E~~stSaQDeFAKWaKL~Rk~DKl~~ele~l~~~l~~~~ 59 (65)
T 3sja_C 5 SKKYLAKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINNLKDEIQSEN 59 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 3455566666666666654 145666677777777777766666543
No 226
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=35.04 E-value=65 Score=24.82 Aligned_cols=28 Identities=29% Similarity=0.341 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024834 123 VNQQLLKRLQGQAALEAEVARLKCLLVDIRG 153 (262)
Q Consensus 123 eNqqLl~rLq~~a~LEaEn~rLRaqL~elrg 153 (262)
+|..|.++| ..++.|++.||.++.+++.
T Consensus 47 EN~~Lh~~i---e~l~eEi~~lk~en~eL~e 74 (83)
T 1uii_A 47 ENEKLHKEI---EQKDNEIARLKKENKELAE 74 (83)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 444444443 3355666666666555544
No 227
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=34.87 E-value=1.5e+02 Score=22.49 Aligned_cols=52 Identities=19% Similarity=0.235 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHH-HHHHHHHHHHHHHHHHHHHHh
Q 024834 102 YREKKKARTASLEDEVVRLRAVNQQLL----------KRLQ-GQAALEAEVARLKCLLVDIRG 153 (262)
Q Consensus 102 SR~RKQaHleeLE~QV~qLraeNqqLl----------~rLq-~~a~LEaEn~rLRaqL~elrg 153 (262)
-|+|=+..++.-.+++.-|+...+.|. .+|+ +.+.|+..+..|+....+|..
T Consensus 12 LRrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~~ 74 (78)
T 3iv1_A 12 LRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELSS 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555666666666655554443 3332 355677777777777666654
No 228
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=34.80 E-value=28 Score=30.71 Aligned_cols=47 Identities=15% Similarity=0.032 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 101 KYREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVD 150 (262)
Q Consensus 101 RSR~RKQaHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~e 150 (262)
|+|+-|..-.+++-.+.+.+.++.++|...+ ..+++++..|+.++.+
T Consensus 134 ~FRE~~~~~~~e~~~~~e~~~~~i~ql~~En---~~le~~Ie~Lk~e~~e 180 (250)
T 2ve7_C 134 HFREACRETYMEFLWQYKSSADKMQQLNAAH---QEALMKLERLEKEVDE 180 (250)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH---HHHHHSCC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhh
Confidence 5566666666666666666666666655553 3456666666555444
No 229
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=34.77 E-value=1.5e+02 Score=22.56 Aligned_cols=17 Identities=18% Similarity=0.366 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 024834 114 EDEVVRLRAVNQQLLKR 130 (262)
Q Consensus 114 E~QV~qLraeNqqLl~r 130 (262)
+.++..|+.+=..|+..
T Consensus 10 ~~eL~~l~~eE~~L~~e 26 (96)
T 3q8t_A 10 QRELKELALEEERLIQE 26 (96)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 230
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=34.73 E-value=2.1e+02 Score=27.40 Aligned_cols=67 Identities=9% Similarity=0.065 Sum_probs=40.6
Q ss_pred HhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024834 87 KTKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 87 RK~KRmlsNRESARRSR~RKQaHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrgri~ 156 (262)
+++|.+..|-++|-.+=.+=...+..||..+.......+.|...+. .....+..|+..+..|..+..
T Consensus 70 ~~q~~~~~n~~~~~q~Skkml~~~~~~~~~~~~~~~~i~~l~~~~~---~~~~~i~~L~~~v~~l~~~~~ 136 (411)
T 3ghg_C 70 PDESSKPNMIDAATLKSRKMLEEIMKYEASILTHDSSIRYLQEIYN---SNNQKIVNLKEKVAQLEAQCQ 136 (411)
T ss_dssp TTTCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTTSC
T ss_pred cccCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhc
Confidence 3456666677777666555555555566666666666655555543 334556777777777766654
No 231
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=34.37 E-value=2e+02 Score=26.88 Aligned_cols=28 Identities=32% Similarity=0.396 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhccccc
Q 024834 136 ALEAEVARLKCLLVDIRGRIEGEIGSFP 163 (262)
Q Consensus 136 ~LEaEn~rLRaqL~elrgri~~~iG~fp 163 (262)
.|..++..|..++.++...+...+-..|
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~ip 102 (421)
T 1ses_A 75 ALGEEAKRLEEALREKEARLEALLLQVP 102 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3444444555555555555554443333
No 232
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=34.16 E-value=80 Score=25.06 Aligned_cols=23 Identities=9% Similarity=0.186 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 024834 109 RTASLEDEVVRLRAVNQQLLKRL 131 (262)
Q Consensus 109 HleeLE~QV~qLraeNqqLl~rL 131 (262)
++++|++++++|+...+.|..++
T Consensus 89 ~~~~l~~~i~~L~~~~~~L~~~i 111 (142)
T 3gp4_A 89 QRIELKNRIDVMQEALDRLDFKI 111 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444443333333
No 233
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=33.97 E-value=1.4e+02 Score=21.89 Aligned_cols=53 Identities=13% Similarity=0.193 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--HHH---------HHHHHHHHHHHHHHHHHHHhhhhhhcccc
Q 024834 110 TASLEDEVVRLRAVNQQLLKR--LQG---------QAALEAEVARLKCLLVDIRGRIEGEIGSF 162 (262)
Q Consensus 110 leeLE~QV~qLraeNqqLl~r--Lq~---------~a~LEaEn~rLRaqL~elrgri~~~iG~f 162 (262)
..+|+.++.+|+.....|... -.+ +.........|+..|.+|...|+.....|
T Consensus 27 ~~~i~~~l~~L~~~v~~L~~~g~W~G~A~~ay~~~~~~W~~~a~~l~~~L~~i~~~l~~a~~~y 90 (103)
T 4i0x_B 27 KEFVTENLDQLESRAQKLVQSGQWAGAAAAAYSQAHKEWMDAARELVEGLSQMEEAARTAHGAY 90 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCeechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555 332 34455667778888888888887654443
No 234
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=33.60 E-value=57 Score=25.49 Aligned_cols=11 Identities=18% Similarity=0.383 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 024834 137 LEAEVARLKCL 147 (262)
Q Consensus 137 LEaEn~rLRaq 147 (262)
|+.++..|+..
T Consensus 28 l~~~l~~~~~~ 38 (182)
T 3kqg_A 28 LQGSLENMSKL 38 (182)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 235
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=33.57 E-value=1.6e+02 Score=22.42 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 105 KKKARTASLEDEVVRLRAVNQQLLK 129 (262)
Q Consensus 105 RKQaHleeLE~QV~qLraeNqqLl~ 129 (262)
+=.+.++.+.++++.|+.+|..|..
T Consensus 38 ~Lh~~ie~~~eEi~~LkeEN~~L~e 62 (79)
T 2zxx_A 38 KLHKEIEQKDSEIARLRKENKDLAE 62 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455555666666666655533
No 236
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=33.14 E-value=39 Score=24.54 Aligned_cols=21 Identities=38% Similarity=0.374 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 024834 97 EAVRKYREKKKARTASLEDEV 117 (262)
Q Consensus 97 ESARRSR~RKQaHleeLE~QV 117 (262)
.+-|+.|.+=...+++|..-|
T Consensus 18 ~~Er~RR~~in~~f~~Lr~lv 38 (80)
T 1hlo_A 18 ALERKRRDHIKDSFHSLRDSV 38 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHC
Confidence 444555554455566665544
No 237
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=33.08 E-value=67 Score=30.26 Aligned_cols=43 Identities=19% Similarity=0.154 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024834 108 ARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRG 153 (262)
Q Consensus 108 aHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrg 153 (262)
.++..|+.+...|+.++..|..++ ..+..|+..++.++..++.
T Consensus 49 ~~lk~le~~~~~L~~e~e~l~~~~---~~~~~e~~~~~ee~~~l~~ 91 (428)
T 4b4t_K 49 FKLKKLEKEYELLTLQEDYIKDEQ---RHLKRELKRAQEEVKRIQS 91 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHcC
Confidence 345556777777777766665553 3456677777777665543
No 238
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=32.91 E-value=70 Score=22.92 Aligned_cols=27 Identities=37% Similarity=0.422 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024834 125 QQLLKRLQGQAALEAEVARLKCLLVDIRGR 154 (262)
Q Consensus 125 qqLl~rLq~~a~LEaEn~rLRaqL~elrgr 154 (262)
.||++.+ ..|..||..||.+|.+-...
T Consensus 6 dQL~~QV---e~Lk~ENshLrrEL~dNS~~ 32 (54)
T 1deb_A 6 DQLLKQV---EALKMENSNLRQELEDNSNH 32 (54)
T ss_dssp HHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH---HHHHHHhhHHHHHHHhhHHH
Confidence 3555553 67788888888888775443
No 239
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=32.51 E-value=90 Score=28.81 Aligned_cols=50 Identities=16% Similarity=0.213 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 024834 109 RTASLEDEVVRLRAVNQQLLKRL--QGQAALEAEVARLKCLLVDIRGRIEGE 158 (262)
Q Consensus 109 HleeLE~QV~qLraeNqqLl~rL--q~~a~LEaEn~rLRaqL~elrgri~~~ 158 (262)
.+.+|+.++.+|+.+....+..- ...+.|..+...|+.++.++..++...
T Consensus 395 ~i~~l~~~i~~l~~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 446 (468)
T 3pxg_A 395 NLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKEK 446 (468)
T ss_dssp STHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHSGGGHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46788888888887766554321 135577788888999988888887754
No 240
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=32.37 E-value=1.7e+02 Score=23.80 Aligned_cols=49 Identities=10% Similarity=0.054 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHhhhh
Q 024834 108 ARTASLEDEVVRLRA-VNQQLLKRLQG------------QAALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 108 aHleeLE~QV~qLra-eNqqLl~rLq~------------~a~LEaEn~rLRaqL~elrgri~ 156 (262)
+=++.|++|+.+|+. +...+.+++.. |.+-..+...+...+..|..+|.
T Consensus 9 ~g~~~L~~EL~~L~~~~R~~i~~~i~~Ar~~GDlsENaeY~aak~~q~~~e~rI~~L~~~L~ 70 (158)
T 2p4v_A 9 EGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYLTKCME 70 (158)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHSCTTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcccchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345678888888843 56666666641 33334455556666666666665
No 241
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=32.23 E-value=1.6e+02 Score=25.05 Aligned_cols=49 Identities=18% Similarity=0.251 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 024834 106 KKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIEG 157 (262)
Q Consensus 106 KQaHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrgri~~ 157 (262)
=+.+|++|.+...+|..+ |..+...+..+|.+...||-.|..|+-.-+.
T Consensus 101 LksRL~~l~~sk~~L~e~---L~~q~~~~relERemnsLKPeL~qL~K~rD~ 149 (170)
T 3l4q_C 101 LKSRIAEIHESRTKLEQE---LRAQASDNREIDKRMNSLKPDLMQLRKIRDQ 149 (170)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 345566666666665333 3333333456666777777766666554443
No 242
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=32.19 E-value=1.4e+02 Score=26.49 Aligned_cols=39 Identities=18% Similarity=0.360 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024834 108 ARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 108 aHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrgri~ 156 (262)
+.+..|+.++.+.++|++.+... ++.-|.+++++|...+
T Consensus 178 ~kl~~l~~~L~~~~~e~~s~~~~----------~~~~~~~~~~~~~~~~ 216 (228)
T 3q0x_A 178 GTCHDLSDDLSRTRDDRDSMVAQ----------LAQCRQQLAQLREQYD 216 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHh
Confidence 36777888888888877666444 3444555555555443
No 243
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=31.74 E-value=65 Score=21.57 Aligned_cols=9 Identities=33% Similarity=0.505 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q 024834 123 VNQQLLKRL 131 (262)
Q Consensus 123 eNqqLl~rL 131 (262)
+|.+|-+.|
T Consensus 8 ENekLhk~i 16 (37)
T 1t6f_A 8 ENEKLHKEI 16 (37)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344444433
No 244
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=31.60 E-value=1.8e+02 Score=22.41 Aligned_cols=9 Identities=33% Similarity=0.523 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 024834 140 EVARLKCLL 148 (262)
Q Consensus 140 En~rLRaqL 148 (262)
++.+|..++
T Consensus 59 ei~~le~~i 67 (84)
T 1gmj_A 59 EIERLQKEI 67 (84)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 245
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=31.04 E-value=1.2e+02 Score=20.40 Aligned_cols=47 Identities=2% Similarity=0.049 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024834 106 KKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRI 155 (262)
Q Consensus 106 KQaHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrgri 155 (262)
.+..+++++.++..++.+-+.+..++ ..+.+++...|..+..+...|
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~k~~~---~~~~~~l~~~~~~I~~~k~qi 56 (60)
T 3htk_A 10 LENQVEELTEKCSLKTDEFLKAKEKI---NEIFEKLNTIRDEVIKKKNQN 56 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555554444443 233444455555554444443
No 246
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=31.01 E-value=1.6e+02 Score=21.81 Aligned_cols=7 Identities=14% Similarity=0.268 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 024834 110 TASLEDE 116 (262)
Q Consensus 110 leeLE~Q 116 (262)
+++|+..
T Consensus 33 i~~l~~~ 39 (112)
T 1l8d_A 33 IGDLKTA 39 (112)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 247
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=30.42 E-value=1.4e+02 Score=20.91 Aligned_cols=29 Identities=3% Similarity=-0.070 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 116 EVVRLRAVNQQLLKRLQGQAALEAEVARLKCL 147 (262)
Q Consensus 116 QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaq 147 (262)
++.+|..+-++|-.++ ..|..++..||..
T Consensus 5 ki~~Lss~V~~L~~kV---dqLssdV~al~~~ 33 (52)
T 1jcd_A 5 KADQASSDAQTANAKA---DQASNDANAARSD 33 (52)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 3444444444444443 2344444444443
No 248
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=30.33 E-value=2.3e+02 Score=25.04 Aligned_cols=9 Identities=22% Similarity=0.313 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 024834 140 EVARLKCLL 148 (262)
Q Consensus 140 En~rLRaqL 148 (262)
.+..||..|
T Consensus 89 ~~eeLr~~L 97 (273)
T 3s84_A 89 NADSLQASL 97 (273)
T ss_dssp HHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 333333333
No 249
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=30.26 E-value=55 Score=26.07 Aligned_cols=21 Identities=14% Similarity=0.104 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 024834 136 ALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 136 ~LEaEn~rLRaqL~elrgri~ 156 (262)
.|+++++.|+..+..|..+|.
T Consensus 106 ~l~~~i~~L~~~~~~L~~~i~ 126 (148)
T 3gpv_A 106 NVLQLIQDTEKNLKKIQQKIA 126 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444445555544444444443
No 250
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=30.18 E-value=2.7e+02 Score=24.61 Aligned_cols=17 Identities=12% Similarity=0.233 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHhhh
Q 024834 139 AEVARLKCLLVDIRGRI 155 (262)
Q Consensus 139 aEn~rLRaqL~elrgri 155 (262)
+|...++++|++.|..+
T Consensus 192 ~e~~s~~~~~~~~~~~~ 208 (228)
T 3q0x_A 192 DDRDSMVAQLAQCRQQL 208 (228)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555555544443
No 251
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=30.17 E-value=2.1e+02 Score=28.71 Aligned_cols=91 Identities=21% Similarity=0.255 Sum_probs=0.0
Q ss_pred cccceeccccccCCCCCCCCCCCccccchHHHhhccCcccHH--HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 56 THTCFHVHTKIVAPTSEDKVSTDDTAESTEKKTKKRPLGNRE--AVRKYREK---KKARTASLEDEVVRLRAVNQQLLKR 130 (262)
Q Consensus 56 thtc~h~hT~~~~s~s~d~~~~~d~~e~~d~RK~KRmlsNRE--SARRSR~R---KQaHleeLE~QV~qLraeNqqLl~r 130 (262)
||+|+.-.--|+.. -..+.+.|-.+. +++-|-| +=-|-|+| ++..+..++.-|..|++.-.++..+
T Consensus 315 ~~~~~~~~~~~~~~--~~~~~~~~ve~~-------Kki~naevae~~~lrQRlddArNEItsaeSaInslqaqvSa~t~e 385 (602)
T 1cii_A 315 SHSGLDYKRNILND--RNPVVTEDVEGD-------KKIYNAEVAEWDKLRQRLLDARNKITSAESAVNSARNNLSARTNE 385 (602)
T ss_dssp TSCHHHHHHHTSCC--CCSCCSSCHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccchhhhhhhhcC--CCCcchhhhhhH-------HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHH----HHHHHHHHHHHHHHHHHHHhhh
Q 024834 131 LQG----QAALEAEVARLKCLLVDIRGRI 155 (262)
Q Consensus 131 Lq~----~a~LEaEn~rLRaqL~elrgri 155 (262)
.+. ..+++.|-.-+|.++..+.+++
T Consensus 386 ~k~A~d~l~a~~kek~~~~n~~a~~~~Ki 414 (602)
T 1cii_A 386 QKHANDALNALLKEKENIRNQLSGINQKI 414 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHH
No 252
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=30.16 E-value=1.8e+02 Score=23.62 Aligned_cols=46 Identities=20% Similarity=0.201 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhhhh
Q 024834 111 ASLEDEVVRLRAVNQQLLKRL-----QGQAALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 111 eeLE~QV~qLraeNqqLl~rL-----q~~a~LEaEn~rLRaqL~elrgri~ 156 (262)
+=|-.|+.+||.+..++.+.- +-....|.|++.+|.....+-..++
T Consensus 35 DPL~~ELeRLr~~~d~~~K~HE~kklqLkse~e~E~ae~k~KYD~~lqe~e 85 (115)
T 3vem_A 35 DPFLHELEKLRRESENSKKTFEEKKSILKAELERKMAEVQAEFRRKFHEVE 85 (115)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346667777777777776543 2345677788888777555544444
No 253
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=30.15 E-value=1.1e+02 Score=24.14 Aligned_cols=26 Identities=19% Similarity=0.277 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhcccc
Q 024834 136 ALEAEVARLKCLLVDIRGRIEGEIGSF 162 (262)
Q Consensus 136 ~LEaEn~rLRaqL~elrgri~~~iG~f 162 (262)
.||..+.+-.-++.+|+.||..- |-|
T Consensus 67 DlE~kv~kq~yEI~eL~~rV~dl-gKf 92 (106)
T 1j1d_B 67 DLQEKFKQQKYEINVLRNRINDN-QKV 92 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred hHHHHHHhhhHHHHHHHHHHHHh-cCc
Confidence 44555555555666666666643 443
No 254
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=29.83 E-value=1.6e+02 Score=25.61 Aligned_cols=35 Identities=20% Similarity=0.234 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 110 TASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARL 144 (262)
Q Consensus 110 leeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rL 144 (262)
++.|++++.+|+.+..+|+..-+++..+-..+.+|
T Consensus 74 ~~~LR~r~~~Le~~L~~Li~~A~~Ne~l~~~~~~l 108 (252)
T 3e98_A 74 VRLLRERNIEMRHRLSQLMDVARENDRLFDKTRRL 108 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666666666555554444444443
No 255
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=29.12 E-value=1.8e+02 Score=21.66 Aligned_cols=20 Identities=10% Similarity=0.067 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 024834 134 QAALEAEVARLKCLLVDIRG 153 (262)
Q Consensus 134 ~a~LEaEn~rLRaqL~elrg 153 (262)
+..|.+|...|-.++.++..
T Consensus 44 ~~~l~~ek~~L~~ql~eaEe 63 (89)
T 3bas_A 44 NVTLLEQKNDLFGSMKQLED 63 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHH
Confidence 44555555555555544433
No 256
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=29.04 E-value=2.1e+02 Score=24.70 Aligned_cols=31 Identities=19% Similarity=0.213 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 103 REKKKARTASLEDEVVRLRAVNQQLLKRLQG 133 (262)
Q Consensus 103 R~RKQaHleeLE~QV~qLraeNqqLl~rLq~ 133 (262)
-..-|++...|..++..|+.++.+|..++..
T Consensus 134 ~~~~~~~~~~L~~e~~~l~~~~~~l~~qlE~ 164 (213)
T 1ik9_A 134 IAENQAKNEHLQKENERLLRDWNDVQGRFEK 164 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677777778888888777777777754
No 257
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=29.01 E-value=51 Score=28.79 Aligned_cols=38 Identities=18% Similarity=0.130 Sum_probs=25.6
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 93 LGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKR 130 (262)
Q Consensus 93 lsNRESARRSR~RKQaHleeLE~QV~qLraeNqqLl~r 130 (262)
..=.|+-|-.=-.=-.++++|+++..+|++||+.|.+.
T Consensus 146 ~nPaE~irELi~~~L~~i~~L~a~N~hLqkENeRL~~e 183 (186)
T 3q4f_C 146 ENPAEVIRELICYCLDTIAENQAKNEHLQKENERLLRD 183 (186)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456665555555667777777777777777777654
No 258
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=28.91 E-value=1.8e+02 Score=21.65 Aligned_cols=25 Identities=16% Similarity=0.171 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 108 ARTASLEDEVVRLRAVNQQLLKRLQ 132 (262)
Q Consensus 108 aHleeLE~QV~qLraeNqqLl~rLq 132 (262)
++|.+||.+-..|+..-+.|..+|.
T Consensus 7 ~kLq~~E~~N~~Le~~v~~le~~Le 31 (72)
T 3cve_A 7 MKLQEVEIRNKDLEGQLSEMEQRLE 31 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4566666666666666666666664
No 259
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=28.77 E-value=1.9e+02 Score=21.85 Aligned_cols=25 Identities=16% Similarity=0.238 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 108 ARTASLEDEVVRLRAVNQQLLKRLQ 132 (262)
Q Consensus 108 aHleeLE~QV~qLraeNqqLl~rLq 132 (262)
+++.+||..-..|+..-+.|..+|.
T Consensus 13 ~klq~~E~rN~~Le~~v~~le~~Le 37 (79)
T 3cvf_A 13 QKVQDLETRNAELEHQLRAMERSLE 37 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3455555555555555555555554
No 260
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=28.70 E-value=71 Score=25.85 Aligned_cols=20 Identities=10% Similarity=0.101 Sum_probs=11.9
Q ss_pred HHHHHHHHHHhhhhhhcccc
Q 024834 143 RLKCLLVDIRGRIEGEIGSF 162 (262)
Q Consensus 143 rLRaqL~elrgri~~~iG~f 162 (262)
.-+.+..-|..++...+..|
T Consensus 123 ir~~q~~~L~~kf~~~m~~y 142 (180)
T 1s94_A 123 IRKTQYSTISRKFVEVMSDY 142 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666554
No 261
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=28.39 E-value=22 Score=28.04 Aligned_cols=15 Identities=13% Similarity=0.127 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHH
Q 024834 108 ARTASLEDEVVRLRA 122 (262)
Q Consensus 108 aHleeLE~QV~qLra 122 (262)
..+.-|+.||.-.+.
T Consensus 40 E~i~vLk~Qv~IY~~ 54 (94)
T 3jsv_C 40 ETVPVLKAQADIYKA 54 (94)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 455556666654443
No 262
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=28.35 E-value=1.9e+02 Score=34.50 Aligned_cols=11 Identities=18% Similarity=0.332 Sum_probs=6.5
Q ss_pred cccceeccccc
Q 024834 56 THTCFHVHTKI 66 (262)
Q Consensus 56 thtc~h~hT~~ 66 (262)
...|.++|+.|
T Consensus 1865 ~~~~~~iH~sv 1875 (3245)
T 3vkg_A 1865 VSSLVYIHQTI 1875 (3245)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34577777654
No 263
>1grj_A GREA protein; transcript elongation factor, transcript cleavage factor, transcription regulation; 2.20A {Escherichia coli} SCOP: a.2.1.1 d.26.1.2
Probab=28.08 E-value=2.4e+02 Score=22.80 Aligned_cols=49 Identities=12% Similarity=0.192 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHhhhh
Q 024834 108 ARTASLEDEVVRLRA-VNQQLLKRLQG------------QAALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 108 aHleeLE~QV~qLra-eNqqLl~rLq~------------~a~LEaEn~rLRaqL~elrgri~ 156 (262)
+=++.|++|+.+|+. +...+.+++.. |.+-..+...+-..+.+|..+|.
T Consensus 9 ~g~~~L~~El~~L~~~~rp~i~~~i~~A~~~gDlsENaeY~aak~~q~~~e~ri~~Le~~L~ 70 (158)
T 1grj_A 9 RGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRIKDIEAKLS 70 (158)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTCCGGGCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccchhhHhhHHHHHhcccccccchhhhHHHHHHHHHHHHHHHHHHHh
Confidence 345678888888877 56666666642 22333334444455666666665
No 264
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=27.97 E-value=1.7e+02 Score=22.52 Aligned_cols=27 Identities=11% Similarity=0.019 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 106 KKARTASLEDEVVRLRAVNQQLLKRLQ 132 (262)
Q Consensus 106 KQaHleeLE~QV~qLraeNqqLl~rLq 132 (262)
=++.|.+|+.++.+......-|.+-+.
T Consensus 20 L~~Ki~el~~ei~ke~~~regl~Km~~ 46 (98)
T 2ke4_A 20 LQQQLEERSRELQKEVDQREALKKMKD 46 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367788999999888888777766654
No 265
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=27.95 E-value=2.3e+02 Score=22.73 Aligned_cols=20 Identities=15% Similarity=0.097 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 024834 111 ASLEDEVVRLRAVNQQLLKR 130 (262)
Q Consensus 111 eeLE~QV~qLraeNqqLl~r 130 (262)
..|.+++.++.++...|...
T Consensus 16 ~ql~~qL~k~~~~r~~Le~~ 35 (112)
T 1x79_B 16 RQANDQLEKTMKDKQELEDF 35 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444443333333
No 266
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=27.83 E-value=1.1e+02 Score=25.37 Aligned_cols=24 Identities=13% Similarity=0.133 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 109 RTASLEDEVVRLRAVNQQLLKRLQ 132 (262)
Q Consensus 109 HleeLE~QV~qLraeNqqLl~rLq 132 (262)
+++.|...++.+..+...|..+|.
T Consensus 33 ~l~~l~~~l~~~~~e~~~L~~~l~ 56 (135)
T 2e7s_A 33 DYNTLKRELSDRDDEVKRLREDIA 56 (135)
T ss_dssp HHHHHHHHTTTHHHHHHTHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHH
Confidence 444444444445555555555443
No 267
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=27.68 E-value=1.9e+02 Score=28.62 Aligned_cols=14 Identities=21% Similarity=0.287 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q 024834 113 LEDEVVRLRAVNQQ 126 (262)
Q Consensus 113 LE~QV~qLraeNqq 126 (262)
+++|.+.+++.|.+
T Consensus 46 i~aeNeaikkrNa~ 59 (497)
T 3iox_A 46 LTAENTAIKKRNAD 59 (497)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333344433333
No 268
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=27.59 E-value=2.8e+02 Score=23.70 Aligned_cols=16 Identities=6% Similarity=0.200 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHhh
Q 024834 139 AEVARLKCLLVDIRGR 154 (262)
Q Consensus 139 aEn~rLRaqL~elrgr 154 (262)
+++..+++++..++..
T Consensus 128 a~l~~~~a~l~~a~a~ 143 (341)
T 3fpp_A 128 AQIGTIDAQIKRNQAS 143 (341)
T ss_dssp HHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444433
No 269
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=27.54 E-value=1e+02 Score=27.61 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=13.7
Q ss_pred HhhccCcccHHHH-HHHHHHHHHH
Q 024834 87 KTKKRPLGNREAV-RKYREKKKAR 109 (262)
Q Consensus 87 RK~KRmlsNRESA-RRSR~RKQaH 109 (262)
|-.=+-++|||+. +.+|.||+.=
T Consensus 93 R~~LK~IR~~E~svqp~R~~R~~l 116 (234)
T 3plt_A 93 RVTLKSIRNIEASVQPSRDRKEKI 116 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHH
Confidence 4445667788765 5556665543
No 270
>3fx0_A NF-kappa-B essential modulator; coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia, HOST-virus interaction; 3.20A {Homo sapiens}
Probab=27.30 E-value=1.4e+02 Score=23.55 Aligned_cols=50 Identities=16% Similarity=0.191 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhhhhhccc
Q 024834 105 KKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVD---IRGRIEGEIGS 161 (262)
Q Consensus 105 RKQaHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~e---lrgri~~~iG~ 161 (262)
.||..+++|-+++.+++....++ ..|.+++.+-+..... -|.++.++...
T Consensus 35 ~KQ~~ideLKe~i~q~~~~~E~i-------~vL~aQ~~iY~~DF~aERaaREk~~~EKe~ 87 (96)
T 3fx0_A 35 AKQEVIDKLKEEAEQHKIVMETV-------PVLKAQADIYKADFQAERQAREKLAEKKEL 87 (96)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHTSSTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 38888899888888887664333 4455555555544332 35566655543
No 271
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=27.23 E-value=1.3e+02 Score=27.64 Aligned_cols=18 Identities=6% Similarity=0.065 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 024834 114 EDEVVRLRAVNQQLLKRL 131 (262)
Q Consensus 114 E~QV~qLraeNqqLl~rL 131 (262)
+.++..|+.....+..+|
T Consensus 25 ~~~i~~L~~~l~~~~~~i 42 (323)
T 1lwu_C 25 DAQIQELSEMWRVNQQFV 42 (323)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444443
No 272
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=27.22 E-value=16 Score=28.89 Aligned_cols=68 Identities=13% Similarity=0.037 Sum_probs=28.2
Q ss_pred hHHHhhccCcccHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 84 TEKKTKKRPLGNREAVRKYR----------EKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDI 151 (262)
Q Consensus 84 ~d~RK~KRmlsNRESARRSR----------~RKQaHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~el 151 (262)
.-+|++|-.+.++-.+-+.= +=|-.=|+.-.+=+..|+.+++.|.........|+.++..|...+.+|
T Consensus 33 ~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~~~~~~l~~~n~~L~~riqeL 110 (118)
T 4ati_A 33 LIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLENRQKKLEHANRHLLLRVQEL 110 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667776677766665542 114444445555556666666666665555566777777777665554
No 273
>3duz_A GP67, major envelope glycoprotein; fusion protein, coiled-coil, fusion peptide, trimer, viral, lipoprotein; 2.95A {Autographa californica nuclearpolyhedrosis virus}
Probab=27.01 E-value=3.8e+02 Score=26.35 Aligned_cols=47 Identities=19% Similarity=0.268 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---Hhhhh
Q 024834 107 KARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDI---RGRIE 156 (262)
Q Consensus 107 QaHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~el---rgri~ 156 (262)
-+-+++|..-++.|.=||++|...+ +.|++.+..|+..+..+ .++|+
T Consensus 276 aAs~~Dl~~I~~~lm~e~~~lr~Nl---~~L~~~~n~l~~~l~~vI~SVaKID 325 (487)
T 3duz_A 276 TATKGDLMHIQEELMYENDLLKMNI---ELMHAHINKLNNMLHDLIVSVAKVD 325 (487)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHhhhhhhhhH---HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4568899999999999999998776 66778888887777665 34555
No 274
>2lz1_A Nuclear factor erythroid 2-related factor 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=26.94 E-value=0.88 Score=35.80 Aligned_cols=23 Identities=22% Similarity=0.224 Sum_probs=19.3
Q ss_pred HHHhhccCcccHHHHHHHHHHHH
Q 024834 85 EKKTKKRPLGNREAVRKYREKKK 107 (262)
Q Consensus 85 d~RK~KRmlsNRESARRSR~RKQ 107 (262)
-.|..||...||.||++.|.||.
T Consensus 64 lIrdiRRRgKNkvAAqnCRKRKl 86 (90)
T 2lz1_A 64 LIRDIRRRGKNKVAAQNCRKRKL 86 (90)
T ss_dssp HHHHHHHHSCSCCCCCCCSCCCC
T ss_pred HHHHHHHhhhhHHHHHHcchhhc
Confidence 35778899999999999998874
No 275
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=26.89 E-value=1.7e+02 Score=27.33 Aligned_cols=20 Identities=20% Similarity=0.014 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 024834 136 ALEAEVARLKCLLVDIRGRI 155 (262)
Q Consensus 136 ~LEaEn~rLRaqL~elrgri 155 (262)
.|.+++..|+.++.++...+
T Consensus 68 ~l~~~~~~~~~~~~~~~~~~ 87 (421)
T 1ses_A 68 ALIARGKALGEEAKRLEEAL 87 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555444433
No 276
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=26.71 E-value=1.1e+02 Score=27.60 Aligned_cols=24 Identities=21% Similarity=0.102 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 108 ARTASLEDEVVRLRAVNQQLLKRL 131 (262)
Q Consensus 108 aHleeLE~QV~qLraeNqqLl~rL 131 (262)
+.++.|+++...|+++.++|.+.+
T Consensus 185 ~eie~L~~~~~~L~eEi~~Le~~~ 208 (315)
T 2ve7_A 185 FKLESLEAKNRALNEQIARLEQER 208 (315)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666665554443
No 277
>1vp7_A Exodeoxyribonuclease VII small subunit; NP_881400.1, joint center for structural genomics, PSI, protein structure initiative; 2.40A {Bordetella pertussis tohama I} SCOP: a.7.13.1
Probab=26.60 E-value=77 Score=24.93 Aligned_cols=48 Identities=15% Similarity=0.022 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024834 109 RTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 109 HleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrgri~ 156 (262)
-+++||.-|.+|..-.--|..-|..+..=.+-+...+..|.....+|.
T Consensus 35 al~eLEeIV~~LE~gel~LEesl~lyeeG~~L~k~C~~~L~~AE~kV~ 82 (100)
T 1vp7_A 35 ALAELESLVSAMENGTLPLEQSLSAYRRGVELARVCQDRLAQAEQQVK 82 (100)
T ss_dssp HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888889999887777777766554444455556666666666655
No 278
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=26.59 E-value=1.1e+02 Score=26.28 Aligned_cols=40 Identities=18% Similarity=0.223 Sum_probs=25.4
Q ss_pred CcccHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 92 PLGNREA--------VRKYREKKKARTASLEDEVVRLRAVNQQLLKRL 131 (262)
Q Consensus 92 mlsNRES--------ARRSR~RKQaHleeLE~QV~qLraeNqqLl~rL 131 (262)
...||.- |-|+-.+.|+.++.||+++...+.++..+.+.|
T Consensus 118 ~a~~paE~ireli~~AertV~kLqkeiD~LEDeL~~eKek~k~i~~eL 165 (175)
T 3mud_A 118 KVENPAEVIRELICYCLDTTAKNEKSIDDLEEKVAHAKEENLNMHQML 165 (175)
T ss_dssp ECSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566655 556666677777777777766666666655544
No 279
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=26.49 E-value=27 Score=29.01 Aligned_cols=13 Identities=31% Similarity=0.363 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHH
Q 024834 137 LEAEVARLKCLLV 149 (262)
Q Consensus 137 LEaEn~rLRaqL~ 149 (262)
++.|..+|...+.
T Consensus 44 ~~~e~~~L~~~l~ 56 (135)
T 2e7s_A 44 RDDEVKRLREDIA 56 (135)
T ss_dssp HHHHHHTHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 3444444444333
No 280
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=26.35 E-value=1.9e+02 Score=21.99 Aligned_cols=34 Identities=21% Similarity=0.140 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 116 EVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIR 152 (262)
Q Consensus 116 QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elr 152 (262)
+-.+|..+..++...| +.|+.||..|+..+...+
T Consensus 35 EN~~Lh~~ie~~~eEi---~~LkeEN~~L~el~~~~~ 68 (79)
T 2zxx_A 35 ENEKLHKEIEQKDSEI---ARLRKENKDLAEVAEHVQ 68 (79)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 3444444444444443 567777777766555443
No 281
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=25.95 E-value=1.4e+02 Score=24.87 Aligned_cols=8 Identities=13% Similarity=0.032 Sum_probs=3.5
Q ss_pred hccCcccH
Q 024834 89 KKRPLGNR 96 (262)
Q Consensus 89 ~KRmlsNR 96 (262)
.|+.+.++
T Consensus 69 i~~~~~~~ 76 (278)
T 1r8e_A 69 MKKAQDLE 76 (278)
T ss_dssp HHHHTTSC
T ss_pred HHHHHHhC
Confidence 34444443
No 282
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=25.91 E-value=1.7e+02 Score=23.38 Aligned_cols=40 Identities=20% Similarity=0.283 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024834 108 ARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRG 153 (262)
Q Consensus 108 aHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrg 153 (262)
+.+++|+.||+.++..+++|.+-.+ +-....|.-...|-|
T Consensus 4 ~e~~~l~~qi~~~ekr~~RLKevF~------~ks~eFReav~~LlG 43 (123)
T 4dzo_A 4 KEVAELKKQVESAELKNQRLKEVFQ------TKIQEFRKACYTLTG 43 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhC
Confidence 5678888888888888877766542 333444555555544
No 283
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=25.86 E-value=92 Score=22.35 Aligned_cols=21 Identities=19% Similarity=0.325 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 024834 136 ALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 136 ~LEaEn~rLRaqL~elrgri~ 156 (262)
.|+.+++.|...+..|...+.
T Consensus 50 ~l~~~i~~L~~~~~~L~~~~~ 70 (99)
T 1q08_A 50 EVEARIAELQSMQRSLQRLND 70 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444455555554444444444
No 284
>3fav_B ESAT-6, 6 kDa early secretory antigenic target; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_B
Probab=25.85 E-value=1.7e+02 Score=20.45 Aligned_cols=29 Identities=17% Similarity=0.181 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhcccc
Q 024834 134 QAALEAEVARLKCLLVDIRGRIEGEIGSF 162 (262)
Q Consensus 134 ~a~LEaEn~rLRaqL~elrgri~~~iG~f 162 (262)
+.........|+..|.+|...|......|
T Consensus 54 ~~~w~~~~~~~~~~L~~i~~~l~~~~~~y 82 (94)
T 3fav_B 54 QQKWDATATELNNALQNLARTISEAGQAM 82 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555667778888888888877654443
No 285
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=25.55 E-value=41 Score=31.86 Aligned_cols=22 Identities=18% Similarity=0.182 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024834 109 RTASLEDEVVRLRAVNQQLLKR 130 (262)
Q Consensus 109 HleeLE~QV~qLraeNqqLl~r 130 (262)
...+||.+++.++.+...|.+.
T Consensus 66 ~~~~~e~~~~~~~~~~~~l~~~ 87 (437)
T 4b4t_L 66 EHRRYDDQLKQRRQNIRDLEKL 87 (437)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666655544433
No 286
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=25.50 E-value=83 Score=23.84 Aligned_cols=25 Identities=20% Similarity=0.194 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 107 KARTASLEDEVVRLRAVNQQLLKRL 131 (262)
Q Consensus 107 QaHleeLE~QV~qLraeNqqLl~rL 131 (262)
+++|.+|+.++.+|+..-.+|...+
T Consensus 3 ~~~l~~l~~~~~~l~~~l~~l~~~~ 27 (149)
T 1rtm_1 3 EVKLANMEAEINTLKSKLELTNKLH 27 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3558888888888888887777765
No 287
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=25.48 E-value=1.7e+02 Score=25.72 Aligned_cols=12 Identities=33% Similarity=0.578 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHH
Q 024834 136 ALEAEVARLKCL 147 (262)
Q Consensus 136 ~LEaEn~rLRaq 147 (262)
.|+++...|+.+
T Consensus 117 ~L~~~~~~l~~~ 128 (357)
T 3rrk_A 117 ALEEEIQTIELF 128 (357)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhH
Confidence 344444444444
No 288
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=25.37 E-value=91 Score=20.54 Aligned_cols=24 Identities=38% Similarity=0.376 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 109 RTASLEDEVVRLRAVNQQLLKRLQ 132 (262)
Q Consensus 109 HleeLE~QV~qLraeNqqLl~rLq 132 (262)
+++.-.+.|..|+.+|..|..+|.
T Consensus 14 rlAsyidkVR~LE~~N~~Le~~i~ 37 (39)
T 1gk7_A 14 RFANYIDKVRFLEQQNKILLAELE 37 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456778888888888877663
No 289
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=24.75 E-value=2.5e+02 Score=24.46 Aligned_cols=28 Identities=21% Similarity=0.316 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 105 KKKARTASLEDEVVRLRAVNQQLLKRLQ 132 (262)
Q Consensus 105 RKQaHleeLE~QV~qLraeNqqLl~rLq 132 (262)
..++.+++|.+++.+++++-.-+.+|..
T Consensus 70 ~l~~e~~el~d~~lR~~AEfeN~RkR~~ 97 (213)
T 4ani_A 70 ELEAKLSEMEHRYLRLYADFENFRRRTR 97 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666666666654
No 290
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=24.39 E-value=2.2e+02 Score=25.85 Aligned_cols=25 Identities=20% Similarity=0.158 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 108 ARTASLEDEVVRLRAVNQQLLKRLQ 132 (262)
Q Consensus 108 aHleeLE~QV~qLraeNqqLl~rLq 132 (262)
+.+++|++++++|.++...+.++|.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (426)
T 1lrz_A 247 EYIKELNEERDILNKDLNKALKDIE 271 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4566777777777777777765553
No 291
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=24.16 E-value=2.8e+02 Score=22.19 Aligned_cols=24 Identities=21% Similarity=0.267 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 110 TASLEDEVVRLRAVNQQLLKRLQG 133 (262)
Q Consensus 110 leeLE~QV~qLraeNqqLl~rLq~ 133 (262)
.++|+.++..|+..|+.|..++..
T Consensus 52 ~~eL~~~~~~Le~~n~~L~~~lke 75 (155)
T 2oto_A 52 AEELEKAKQALEDQRKDLETKLKE 75 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367888888888888888887753
No 292
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=24.01 E-value=1.9e+02 Score=22.15 Aligned_cols=22 Identities=5% Similarity=0.105 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024834 110 TASLEDEVVRLRAVNQQLLKRL 131 (262)
Q Consensus 110 leeLE~QV~qLraeNqqLl~rL 131 (262)
+.+|..+..+|+.+-+.|..++
T Consensus 3 ~~~l~~~~q~l~~~~~~l~~~~ 24 (133)
T 1fxk_C 3 LAEIVAQLNIYQSQVELIQQQM 24 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555554
No 293
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=23.99 E-value=1.5e+02 Score=28.06 Aligned_cols=21 Identities=14% Similarity=0.202 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 024834 136 ALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 136 ~LEaEn~rLRaqL~elrgri~ 156 (262)
.|.+++..|+.++.++...+.
T Consensus 73 ~l~~~~~~~~~~~~~~~~~~~ 93 (455)
T 2dq0_A 73 ELLAKSREIVKRIGELENEVE 93 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555544443
No 294
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=23.89 E-value=1.8e+02 Score=22.76 Aligned_cols=24 Identities=17% Similarity=0.228 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhh
Q 024834 135 AALEAEVARLKCLLVDIRGRIEGE 158 (262)
Q Consensus 135 a~LEaEn~rLRaqL~elrgri~~~ 158 (262)
..|.+|+..|+.+|..-+...+..
T Consensus 59 DKl~~ele~l~~~l~~~k~~F~~~ 82 (93)
T 3sjb_C 59 DSLDKEINNLKDEIQSENKAFQAH 82 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555544433
No 295
>4a25_A DPS, ferritin DPS family protein; metal binding protein, detoxification process; 2.00A {Kineococcus radiotolerans}
Probab=23.84 E-value=2.9e+02 Score=22.33 Aligned_cols=51 Identities=16% Similarity=0.190 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHhhhhhhcccccc
Q 024834 113 LEDEVVRLRAVNQQLLKRLQG-------------QAALEAEVARLKCLLVDIRGRIEGEIGSFPY 164 (262)
Q Consensus 113 LE~QV~qLraeNqqLl~rLq~-------------~a~LEaEn~rLRaqL~elrgri~~~iG~fp~ 164 (262)
+-+.++++-+.-..|.-+++. |..+|.....++..+.+|..||.. +|..|.
T Consensus 25 i~~~Ln~~LAd~~~Ly~k~k~~HWnV~G~~F~~lH~~fee~y~e~~~~~D~iAERI~~-LGg~P~ 88 (169)
T 4a25_A 25 LNAGLQEVLVDLTALHLQGKQAHWNIVGENWRDLHLQLDTLVEAARGFSDDVAERMRA-VGGVPD 88 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHEESSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHhhhceeeECCChHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCC
Confidence 444455555555555555542 778999999999999999999987 666663
No 296
>3h6p_C ESAT-6-like protein ESXR; four-helix bundle, structural genomics, PSI-2, protein struc initiative, TB structural genomics consortium; 1.91A {Mycobacterium tuberculosis} PDB: 2kg7_B 3q4h_B
Probab=23.60 E-value=1.6e+02 Score=20.96 Aligned_cols=26 Identities=12% Similarity=0.093 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhcc
Q 024834 135 AALEAEVARLKCLLVDIRGRIEGEIG 160 (262)
Q Consensus 135 a~LEaEn~rLRaqL~elrgri~~~iG 160 (262)
.........|+..|..|...|+....
T Consensus 56 ~~W~~~~~~l~~~L~~i~~~l~~a~~ 81 (96)
T 3h6p_C 56 TQWNQALEDLVRAYQSMSGTHESNTM 81 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555667777777777777765433
No 297
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 9.00A {Bos taurus}
Probab=23.48 E-value=1e+02 Score=27.31 Aligned_cols=34 Identities=24% Similarity=0.352 Sum_probs=22.5
Q ss_pred cCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 91 RPLGNREAVRKYREKKKARTASLEDEVVRLRAVN 124 (262)
Q Consensus 91 RmlsNRESARRSR~RKQaHleeLE~QV~qLraeN 124 (262)
|...-=|+.|+-|++.+++|+++.++-++.+++.
T Consensus 94 ~leeEPEsIRkWREEq~kRLeekDa~sekkk~E~ 127 (205)
T 3lvh_D 94 RLTQEPESIRKWREEQRKRLQELDAASKVMEQEW 127 (205)
T ss_dssp TTTBSTTHHHHHHHHHTTTSTHHHHHHHHHHHHH
T ss_pred ccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455557777788888877777766655555544
No 298
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=23.33 E-value=2.1e+02 Score=24.67 Aligned_cols=10 Identities=20% Similarity=0.252 Sum_probs=4.6
Q ss_pred CCCCCCCccc
Q 024834 72 EDKVSTDDTA 81 (262)
Q Consensus 72 ~d~~~~~d~~ 81 (262)
.|.+..++..
T Consensus 51 G~~V~~Gq~L 60 (369)
T 4dk0_A 51 GQQVKKGDLL 60 (369)
T ss_dssp TSCCCSSCCC
T ss_pred CCEECCCCEE
Confidence 4555444433
No 299
>1zs3_A Lactococcus lactis Mg1363 DPSA; oxidative stress, DNA binding, lactic acid bacteria, DNA binding protein; 2.70A {Lactococcus lactis} SCOP: a.25.1.1
Probab=23.23 E-value=3.2e+02 Score=22.72 Aligned_cols=60 Identities=13% Similarity=-0.071 Sum_probs=41.0
Q ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHhhhhhhcccccc
Q 024834 104 EKKKARTA----SLEDEVVRLRAVNQQLLKRLQG----------QAALEAEVARLKCLLVDIRGRIEGEIGSFPY 164 (262)
Q Consensus 104 ~RKQaHle----eLE~QV~qLraeNqqLl~rLq~----------~a~LEaEn~rLRaqL~elrgri~~~iG~fp~ 164 (262)
+.||+.++ .+-+.+.++-+.-..|.-+++. |..++..+..++..+-+|..||.. +|..|.
T Consensus 14 e~~~~~~d~~~~~~~~~Ln~~LAd~~~Ly~k~k~~HWnV~G~~FH~~fee~y~~~~~~~D~iAERi~~-LG~~p~ 87 (182)
T 1zs3_A 14 ELDKAEIDHHKPTAGAMLGHVLSNLFIENIRLTQAGIYAKSPVKCEYLREIAQREVEYFFKISDLLLD-ENEIVP 87 (182)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCCCC
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccceeeEChhHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCC
Confidence 45565553 3445555666666666666652 567899999999999999999987 555553
No 300
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=23.20 E-value=1.5e+02 Score=22.52 Aligned_cols=43 Identities=16% Similarity=0.160 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024834 111 ASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 111 eeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrgri~ 156 (262)
++|..+|.+|..++..|..+| .++..-..+++..+.++..-+.
T Consensus 33 ~DLI~rvdELt~E~e~l~~El---~s~~~~~~r~~~ri~elEeElk 75 (77)
T 2w83_C 33 NDLIAKVDELTCEKDVLQGEL---EAVKQAKLKLEEKNRELEEELR 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHh
No 301
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=23.10 E-value=1.4e+02 Score=23.63 Aligned_cols=17 Identities=29% Similarity=0.561 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 024834 135 AALEAEVARLKCLLVDI 151 (262)
Q Consensus 135 a~LEaEn~rLRaqL~el 151 (262)
..++.|+..|+.++...
T Consensus 42 k~l~ke~~~l~~~~a~~ 58 (171)
T 2zvf_A 42 KDQRKEIERLKSVIADL 58 (171)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555566555543
No 302
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=23.08 E-value=2.5e+02 Score=21.30 Aligned_cols=29 Identities=14% Similarity=0.223 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 104 EKKKARTASLEDEVVRLRAVNQQLLKRLQ 132 (262)
Q Consensus 104 ~RKQaHleeLE~QV~qLraeNqqLl~rLq 132 (262)
..|++.+.+.+..+.+.+...+|+.-.++
T Consensus 45 e~rk~~i~~ie~~ldEA~eLl~qMelE~r 73 (102)
T 2qyw_A 45 EEKKKLVRDFDEKQQEANETLAEMEEELR 73 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445577777777777666666666655
No 303
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=23.04 E-value=98 Score=23.90 Aligned_cols=9 Identities=11% Similarity=0.209 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 024834 143 RLKCLLVDI 151 (262)
Q Consensus 143 rLRaqL~el 151 (262)
.||.++..+
T Consensus 25 ~lkeel~~L 33 (109)
T 2wg5_A 25 HLENEVARL 33 (109)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 304
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=22.94 E-value=1.8e+02 Score=21.42 Aligned_cols=17 Identities=18% Similarity=0.173 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHh
Q 024834 137 LEAEVARLKCLLVDIRG 153 (262)
Q Consensus 137 LEaEn~rLRaqL~elrg 153 (262)
++.++..|..++..+..
T Consensus 82 ie~~i~~le~~~~~l~~ 98 (117)
T 2zqm_A 82 LEVRLNALERQEKKLNE 98 (117)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444333
No 305
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=22.82 E-value=1.2e+02 Score=22.44 Aligned_cols=19 Identities=26% Similarity=0.272 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 024834 137 LEAEVARLKCLLVDIRGRI 155 (262)
Q Consensus 137 LEaEn~rLRaqL~elrgri 155 (262)
-++|+..||.++..++.-+
T Consensus 37 kd~eI~eLr~~LdK~qsVl 55 (67)
T 1zxa_A 37 KEEEIQELKRKLHKCQSVL 55 (67)
T ss_dssp HHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 4567777777766655543
No 306
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=22.03 E-value=2.6e+02 Score=21.19 Aligned_cols=50 Identities=16% Similarity=0.203 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHhhhhh
Q 024834 108 ARTASLEDEVVRLRAVNQQLLKRLQ--------GQAALEAEVARLKCLLVDIRGRIEG 157 (262)
Q Consensus 108 aHleeLE~QV~qLraeNqqLl~rLq--------~~a~LEaEn~rLRaqL~elrgri~~ 157 (262)
....+|+.-+..|+.....|.+.+. +....+..++.|+.++..|+..++.
T Consensus 36 ~~~~El~~~l~el~e~l~DL~~SI~i~e~~~~~EI~~Rk~~v~~l~~~i~~lk~~~~~ 93 (95)
T 2c5k_T 36 DQEEEIQDILKDVEETIVDLDRSIIVMKRDENEDVSGREAQVKNIKQQLDALKLRFDR 93 (95)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445666666666666666666553 1335566777777777777766653
No 307
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=21.66 E-value=2.4e+02 Score=20.59 Aligned_cols=21 Identities=43% Similarity=0.615 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 024834 112 SLEDEVVRLRAVNQQLLKRLQ 132 (262)
Q Consensus 112 eLE~QV~qLraeNqqLl~rLq 132 (262)
.|.+||..|+.+++.+.+-+.
T Consensus 11 alkDev~eLk~e~k~~k~~le 31 (61)
T 3l4f_A 11 ALKDEVQELRQDNKKMKKSLE 31 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 577899999999988877763
No 308
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=21.57 E-value=54 Score=22.84 Aligned_cols=22 Identities=18% Similarity=0.240 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024834 106 KKARTASLEDEVVRLRAVNQQL 127 (262)
Q Consensus 106 KQaHleeLE~QV~qLraeNqqL 127 (262)
+..+++.|+++|.+|+....+|
T Consensus 56 ~~~~~~~L~~ri~~LE~~l~~l 77 (81)
T 1hwt_C 56 KDNELKKLRERVKSLEKTLSKV 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHTTC---
T ss_pred hHHHHHHHHHHHHHHHHHHHHh
Confidence 4467888888888776655443
No 309
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=21.53 E-value=1.4e+02 Score=19.62 Aligned_cols=16 Identities=19% Similarity=0.300 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 024834 115 DEVVRLRAVNQQLLKR 130 (262)
Q Consensus 115 ~QV~qLraeNqqLl~r 130 (262)
..+..|+.+|..|..+
T Consensus 14 qDIddlkrQN~~Le~Q 29 (34)
T 1a93_B 14 QDIDDLKRQNALLEQQ 29 (34)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHH
Confidence 3344455555444433
No 310
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=21.45 E-value=3.5e+02 Score=23.67 Aligned_cols=27 Identities=22% Similarity=0.318 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 104 EKKKARTASLEDEVVRLRAVNQQLLKR 130 (262)
Q Consensus 104 ~RKQaHleeLE~QV~qLraeNqqLl~r 130 (262)
..=++++++|+.++..++++..++...
T Consensus 229 ~~l~~~i~~l~~~l~~~~~~l~~~~~~ 255 (357)
T 3rrk_A 229 ARMKERARLAPEELVGIREEVARLSRE 255 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566666666666655555555
No 311
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=21.45 E-value=4.3e+02 Score=25.03 Aligned_cols=24 Identities=8% Similarity=0.131 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 108 ARTASLEDEVVRLRAVNQQLLKRL 131 (262)
Q Consensus 108 aHleeLE~QV~qLraeNqqLl~rL 131 (262)
.+|+++..||..+..+-.+|++.|
T Consensus 41 ~~LE~~l~elsn~ts~v~~Lvk~i 64 (409)
T 1m1j_C 41 LEIEGLLQQATNSTGSIEYLIQHI 64 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555555444444
No 312
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=21.20 E-value=3.9e+02 Score=26.72 Aligned_cols=10 Identities=20% Similarity=0.441 Sum_probs=6.3
Q ss_pred cccc-CCCCCCC
Q 024834 12 EMLS-ANIGDFP 22 (262)
Q Consensus 12 ~~~~-~~~~~~~ 22 (262)
.||+ | +|.+|
T Consensus 218 gVysa~-vPG~p 228 (551)
T 2b5u_A 218 GVFTAS-IPGAP 228 (551)
T ss_dssp TCEEEC-CTTSC
T ss_pred ceEEec-cCCCC
Confidence 4677 6 66655
No 313
>1zuj_A Hypothetical protein llacc01001955; oxidative stress, DPS, DNA binding, lactic acid bacteria, DN protein; 2.90A {Lactococcus lactis} SCOP: a.25.1.1
Probab=21.15 E-value=3.6e+02 Score=22.39 Aligned_cols=59 Identities=7% Similarity=-0.094 Sum_probs=40.5
Q ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHhhhhhhcccccc
Q 024834 105 KKKART----ASLEDEVVRLRAVNQQLLKRLQG----------QAALEAEVARLKCLLVDIRGRIEGEIGSFPY 164 (262)
Q Consensus 105 RKQaHl----eeLE~QV~qLraeNqqLl~rLq~----------~a~LEaEn~rLRaqL~elrgri~~~iG~fp~ 164 (262)
.||+.+ ..+-+.+.++-+.-..|.-+++. |..++..+..++..+-+|..||.. +|..|.
T Consensus 14 ~~~~~~dh~~~~~~~~Ln~~LAd~~~Ly~k~~~~HWnV~G~~FH~~fee~y~~~~~~~D~iAERi~~-LG~~p~ 86 (179)
T 1zuj_A 14 VKKSEIDHHKPTAGAMLSHVLSNIFYEKISLMQAGLYAKSANYRIKFREIALKEDEWFYLISEQLLD-ENELVP 86 (179)
T ss_dssp HHHHHHHTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCCCC
T ss_pred HHHhhccccHHHHHHHHHHHHHHHHHHHHHHhccceeeEChhHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCC
Confidence 445544 34555556666666666666652 567899999999999999999987 555553
No 314
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=20.91 E-value=2.2e+02 Score=20.08 Aligned_cols=19 Identities=5% Similarity=0.013 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 024834 111 ASLEDEVVRLRAVNQQLLK 129 (262)
Q Consensus 111 eeLE~QV~qLraeNqqLl~ 129 (262)
.+|+..+..|+.....|..
T Consensus 25 ~~i~~~l~~L~~~~~~l~~ 43 (98)
T 3gwk_C 25 QQVTEVLNLLTQEQAVIDE 43 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHc
Confidence 4455555566555555543
No 315
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=20.85 E-value=3.1e+02 Score=21.49 Aligned_cols=30 Identities=13% Similarity=0.103 Sum_probs=22.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 95 NREAVRKYREKKKARTASLEDEVVRLRAVN 124 (262)
Q Consensus 95 NRESARRSR~RKQaHleeLE~QV~qLraeN 124 (262)
|-.+|-..=..||..+++|-+++.++++..
T Consensus 10 ~L~~aEeaL~~kq~~id~lke~~~q~~~~~ 39 (94)
T 3jsv_C 10 QLQQAEEALVAKQELIDKLKEEAEQHKIVM 39 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 445566666679999999999999998544
No 316
>4g2k_A General control protein GCN4, envelope glycoprote chimera; GP2-GCN4 fusion, viral protein; 1.90A {Saccharomyces cerevisiae}
Probab=20.78 E-value=1.6e+02 Score=24.30 Aligned_cols=40 Identities=23% Similarity=0.418 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024834 107 KARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 107 QaHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrgri~ 156 (262)
|--|..||++|+++-..+-.+ |.|++||+..+..|..++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~ig~L~~~l~ 52 (125)
T 4g2k_A 13 QGNMKQIEDKIEEILSKIYHI----------ENEIARIKKLIGNLVSRLR 52 (125)
T ss_dssp ---CHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHhh----------hHHHHHHHHHHHHHHHHHH
No 317
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=20.70 E-value=2.2e+02 Score=25.40 Aligned_cols=46 Identities=17% Similarity=0.159 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 024834 109 RTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIEG 157 (262)
Q Consensus 109 HleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrgri~~ 157 (262)
+++++|+.+..|.....++.+.. ...|..+..|...|.+|..++..
T Consensus 7 Rvd~~EErIs~le~rleei~q~e---q~~ekrik~ne~sL~dL~d~iRr 52 (233)
T 2yko_A 7 RCDQLEERVSAAEDEINEIKREG---KFREKRIKRNEQSLQEIWDYVKR 52 (233)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhcc
Confidence 35666666666666655554443 34566677778888888887774
No 318
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=20.63 E-value=53 Score=30.37 Aligned_cols=44 Identities=16% Similarity=0.230 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024834 108 ARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRI 155 (262)
Q Consensus 108 aHleeLE~QV~qLraeNqqLl~rLq~~a~LEaEn~rLRaqL~elrgri 155 (262)
-||...+++++.|+.+- .+.+-+.+-|..+.+||+.|+.|+..+
T Consensus 6 ~~~~t~~eki~~ie~~~----~~~~k~k~Te~~~~~lk~kla~lr~el 49 (376)
T 4a9a_A 6 HHMSTTVEKIKAIEDEM----ARTQKNKATSFHLGQLKAKLAKLRREL 49 (376)
T ss_dssp ---CHHHHHHHHHHHHH----HHSCCSTTTHHHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHH----HhcchhhhHHHHHHHHHHHHHHHHHHH
Confidence 46777888888877663 344444444555555666666555544
No 319
>2f23_A Anti-cleavage anti-GREA transcription factor GFH1; anti-GREA GFH1 thermus thermophilus; 1.60A {Thermus thermophilus} SCOP: a.2.1.1 d.26.1.2 PDB: 2eul_A 3aoh_X* 3aoi_X* 2etn_A
Probab=20.63 E-value=3.3e+02 Score=21.79 Aligned_cols=48 Identities=23% Similarity=0.195 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHhhhh
Q 024834 109 RTASLEDEVVRLRAVNQQLLKRLQG------------QAALEAEVARLKCLLVDIRGRIE 156 (262)
Q Consensus 109 HleeLE~QV~qLraeNqqLl~rLq~------------~a~LEaEn~rLRaqL~elrgri~ 156 (262)
-++.|++++.+++.+...+.++++. |.+-..+...|-..+.+|..+|.
T Consensus 11 g~~~L~~el~~~~~~r~~~~~~i~~A~~~GDlsEnaey~aak~~q~~~e~ri~~L~~~L~ 70 (156)
T 2f23_A 11 GYERLMQQLERERERLQEATKILQELMESSDDYDDSGLEAAKQEKARIEARIDSLEDILS 70 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCSCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777766666666666642 33334444555556666666665
No 320
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=20.40 E-value=3.5e+02 Score=22.03 Aligned_cols=19 Identities=11% Similarity=0.167 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 024834 102 YREKKKARTASLEDEVVRL 120 (262)
Q Consensus 102 SR~RKQaHleeLE~QV~qL 120 (262)
-|.+=+++++++..++.-+
T Consensus 83 Lr~~l~kdlee~r~~l~P~ 101 (185)
T 3r2p_A 83 LRQEMSKDLEEVKAKVQPY 101 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHH
Confidence 3444455555555555433
No 321
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=20.30 E-value=3.3e+02 Score=21.70 Aligned_cols=16 Identities=25% Similarity=0.258 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 024834 113 LEDEVVRLRAVNQQLL 128 (262)
Q Consensus 113 LE~QV~qLraeNqqLl 128 (262)
|..+-..|+.+|.+|.
T Consensus 27 l~~eN~~Lk~e~e~l~ 42 (155)
T 2oto_A 27 LRHENKDLKARLENAM 42 (155)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333344444444443
No 322
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=20.19 E-value=1.1e+02 Score=22.69 Aligned_cols=21 Identities=14% Similarity=0.328 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 024834 135 AALEAEVARLKCLLVDIRGRI 155 (262)
Q Consensus 135 a~LEaEn~rLRaqL~elrgri 155 (262)
..|+++++.|...+..|...+
T Consensus 84 ~~l~~~i~~l~~~~~~l~~~~ 104 (108)
T 2vz4_A 84 ELLSARIGKLQKMAAAVEQAM 104 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555444
No 323
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=20.14 E-value=22 Score=30.31 Aligned_cols=25 Identities=16% Similarity=0.401 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024834 108 ARTASLEDEVVRLRAVNQQLLKRLQ 132 (262)
Q Consensus 108 aHleeLE~QV~qLraeNqqLl~rLq 132 (262)
++.+++.+++++|+++.++|.++++
T Consensus 256 ~~~~~~~~~~~~l~~~~~~l~~~l~ 280 (285)
T 3rvy_A 256 SHEDNINNEIIKLREEIVELKELIK 280 (285)
T ss_dssp -------------------------
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhc
Confidence 4456666677777666666655543
No 324
>2yo3_A General control protein GCN4, putative inner MEMB protein, general control protein...; HANS motif, YADA-like head, ylhead; 2.00A {Saccharomyces cerevisiae}
Probab=20.14 E-value=1.3e+02 Score=27.47 Aligned_cols=48 Identities=15% Similarity=0.264 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Q 024834 100 RKYREKKKARTASLEDEVVRLRAVNQQLLKRLQG----QAALEAEVARLKCL 147 (262)
Q Consensus 100 RRSR~RKQaHleeLE~QV~qLraeNqqLl~rLq~----~a~LEaEn~rLRaq 147 (262)
-....---.++.+|..+|.+++.+-.|+.++++. .-.||.|++|++.+
T Consensus 208 ~~an~yTd~k~~~l~n~I~~V~n~~~q~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (268)
T 2yo3_A 208 EEANTYTDQKMGEMNSKIKGVENKMKQIEDKIEEILSKIYHIENEIARIKKL 259 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334445668888999999999888888888864 34678888877653
No 325
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=20.13 E-value=1.8e+02 Score=27.00 Aligned_cols=46 Identities=13% Similarity=0.252 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhhhh
Q 024834 112 SLEDEVVRLRAVNQQLLKRLQ----GQAALEAEVARLKCLLVDIRGRIEG 157 (262)
Q Consensus 112 eLE~QV~qLraeNqqLl~rLq----~~a~LEaEn~rLRaqL~elrgri~~ 157 (262)
.|...|+.|+..-++|...|. .+..+|.+...|+-.|..|+..-+.
T Consensus 209 ~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~lkp~l~ql~k~rd~ 258 (373)
T 3hhm_B 209 KLKSRISEIIDSRRRLEEDLKKQAAEYREIDKRMNSIKPDLIQLRKTRDQ 258 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHH
Confidence 344444444443333333333 4567888888888887777654343
Done!