Query 024836
Match_columns 262
No_of_seqs 392 out of 2361
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 07:46:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024836.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024836hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0484 DnaJ DnaJ-class molecu 99.9 6.6E-26 1.4E-30 208.5 9.5 90 58-147 1-100 (371)
2 KOG0713 Molecular chaperone (D 99.9 1.1E-23 2.3E-28 189.8 8.5 75 57-131 12-86 (336)
3 PRK14288 chaperone protein Dna 99.8 7.7E-21 1.7E-25 177.6 8.4 71 61-131 3-73 (369)
4 KOG0716 Molecular chaperone (D 99.8 1.4E-20 3.1E-25 164.9 8.4 91 60-150 30-137 (279)
5 KOG0712 Molecular chaperone (D 99.8 1E-20 2.2E-25 172.2 7.4 69 60-131 3-71 (337)
6 PRK14296 chaperone protein Dna 99.8 1.3E-20 2.9E-25 176.1 8.3 71 59-130 2-72 (372)
7 PRK14286 chaperone protein Dna 99.8 3.3E-20 7.2E-25 173.5 8.5 72 59-130 2-73 (372)
8 PTZ00037 DnaJ_C chaperone prot 99.8 8.4E-20 1.8E-24 172.8 8.4 73 56-132 23-95 (421)
9 PRK14279 chaperone protein Dna 99.8 7.3E-20 1.6E-24 172.2 7.7 69 60-128 8-76 (392)
10 PRK14287 chaperone protein Dna 99.8 1.3E-19 2.8E-24 169.5 9.2 72 59-131 2-73 (371)
11 PRK14282 chaperone protein Dna 99.8 1.8E-19 3.9E-24 168.4 8.5 72 59-130 2-74 (369)
12 PRK14294 chaperone protein Dna 99.8 2.5E-19 5.3E-24 167.4 8.7 73 59-131 2-74 (366)
13 PRK14297 chaperone protein Dna 99.8 2.8E-19 6.1E-24 167.7 7.8 72 60-131 3-74 (380)
14 PRK14277 chaperone protein Dna 99.8 4E-19 8.7E-24 167.0 8.7 72 60-131 4-75 (386)
15 PRK14285 chaperone protein Dna 99.8 3.2E-19 7E-24 166.5 8.0 71 61-131 3-73 (365)
16 PRK14276 chaperone protein Dna 99.8 3.8E-19 8.2E-24 166.8 8.5 71 60-131 3-73 (380)
17 PRK14301 chaperone protein Dna 99.8 3.6E-19 7.8E-24 166.6 8.2 72 60-131 3-74 (373)
18 PRK14283 chaperone protein Dna 99.8 5.5E-19 1.2E-23 165.7 8.4 72 59-131 3-74 (378)
19 PRK14298 chaperone protein Dna 99.8 6.2E-19 1.3E-23 165.2 8.2 71 60-131 4-74 (377)
20 PRK14295 chaperone protein Dna 99.8 8E-19 1.7E-23 165.1 8.6 72 60-131 8-83 (389)
21 PRK14299 chaperone protein Dna 99.8 9.1E-19 2E-23 158.9 8.6 69 60-129 3-71 (291)
22 PRK14280 chaperone protein Dna 99.8 8.1E-19 1.8E-23 164.4 8.6 70 60-130 3-72 (376)
23 PRK10767 chaperone protein Dna 99.8 8.2E-19 1.8E-23 164.1 8.4 73 59-131 2-74 (371)
24 PRK14284 chaperone protein Dna 99.8 8.9E-19 1.9E-23 164.9 8.4 69 62-130 2-70 (391)
25 PRK14278 chaperone protein Dna 99.8 9.3E-19 2E-23 164.1 8.4 68 61-129 3-70 (378)
26 PF00226 DnaJ: DnaJ domain; I 99.8 1.5E-18 3.2E-23 122.5 7.3 63 62-124 1-64 (64)
27 PRK14291 chaperone protein Dna 99.8 1.3E-18 2.9E-23 163.3 8.4 70 61-131 3-72 (382)
28 KOG0715 Molecular chaperone (D 99.8 1.6E-18 3.5E-23 156.7 8.3 74 56-130 38-111 (288)
29 PRK14281 chaperone protein Dna 99.7 1.5E-18 3.3E-23 163.6 7.6 71 61-131 3-73 (397)
30 PRK14289 chaperone protein Dna 99.7 5.5E-18 1.2E-22 159.3 8.5 71 60-130 4-74 (386)
31 PRK14290 chaperone protein Dna 99.7 5.2E-18 1.1E-22 158.4 8.1 71 61-131 3-74 (365)
32 KOG0717 Molecular chaperone (D 99.7 6.7E-18 1.5E-22 157.0 7.4 71 57-127 4-75 (508)
33 KOG0691 Molecular chaperone (D 99.7 1.1E-17 2.4E-22 150.7 7.8 71 60-130 4-74 (296)
34 PRK14300 chaperone protein Dna 99.7 1.1E-17 2.4E-22 156.6 7.8 70 61-131 3-72 (372)
35 TIGR02349 DnaJ_bact chaperone 99.7 1.2E-17 2.6E-22 155.4 8.0 69 62-131 1-69 (354)
36 PTZ00341 Ring-infected erythro 99.7 2E-17 4.4E-22 165.6 9.5 75 57-132 569-643 (1136)
37 PRK14292 chaperone protein Dna 99.7 2.1E-17 4.5E-22 154.7 8.6 69 61-130 2-70 (371)
38 PRK10266 curved DNA-binding pr 99.7 1.8E-17 3.9E-22 151.4 8.0 68 60-128 3-70 (306)
39 KOG0718 Molecular chaperone (D 99.7 2.4E-17 5.3E-22 153.4 8.1 76 57-132 5-83 (546)
40 PRK14293 chaperone protein Dna 99.7 3.3E-17 7.1E-22 153.5 7.9 70 61-131 3-72 (374)
41 smart00271 DnaJ DnaJ molecular 99.7 1E-16 2.3E-21 111.3 6.5 58 61-118 1-59 (60)
42 cd06257 DnaJ DnaJ domain or J- 99.7 2.8E-16 6E-21 107.2 6.8 55 62-116 1-55 (55)
43 KOG0719 Molecular chaperone (D 99.7 1.7E-16 3.8E-21 136.4 6.7 70 59-128 12-83 (264)
44 KOG0721 Molecular chaperone (D 99.6 3.4E-16 7.3E-21 133.4 7.6 72 57-128 95-166 (230)
45 PHA03102 Small T antigen; Revi 99.6 5.8E-16 1.3E-20 127.3 6.9 66 61-130 5-72 (153)
46 TIGR03835 termin_org_DnaJ term 99.6 1.1E-15 2.4E-20 150.3 8.8 72 61-133 2-73 (871)
47 KOG0624 dsRNA-activated protei 99.6 1.4E-15 3.1E-20 137.9 8.1 73 59-132 392-467 (504)
48 COG2214 CbpA DnaJ-class molecu 99.6 4.8E-15 1E-19 126.3 8.4 68 59-126 4-72 (237)
49 PRK05014 hscB co-chaperone Hsc 99.5 5.6E-14 1.2E-18 118.1 8.0 65 62-126 2-73 (171)
50 PRK01356 hscB co-chaperone Hsc 99.5 9.8E-14 2.1E-18 116.1 7.7 66 61-126 2-72 (166)
51 PRK00294 hscB co-chaperone Hsc 99.5 1.5E-13 3.2E-18 115.6 8.2 68 59-126 2-76 (173)
52 PRK03578 hscB co-chaperone Hsc 99.5 1.7E-13 3.6E-18 115.7 8.3 66 60-125 5-77 (176)
53 PTZ00100 DnaJ chaperone protei 99.4 2.4E-13 5.1E-18 106.6 6.8 56 56-115 60-115 (116)
54 KOG0720 Molecular chaperone (D 99.4 2.2E-13 4.9E-18 127.1 6.1 69 58-127 232-300 (490)
55 KOG0722 Molecular chaperone (D 99.4 1.6E-13 3.4E-18 119.6 4.3 67 60-127 32-98 (329)
56 KOG0550 Molecular chaperone (D 99.4 5.9E-13 1.3E-17 123.2 7.1 67 60-126 372-439 (486)
57 PRK09430 djlA Dna-J like membr 99.3 1.4E-12 3.1E-17 117.0 6.5 60 57-116 196-262 (267)
58 KOG0714 Molecular chaperone (D 99.3 2.1E-12 4.6E-17 115.0 5.5 71 60-130 2-73 (306)
59 PHA02624 large T antigen; Prov 99.2 1.2E-11 2.5E-16 120.7 6.6 60 60-123 10-71 (647)
60 COG5407 SEC63 Preprotein trans 99.2 2.8E-11 6.1E-16 112.9 6.1 69 60-128 97-170 (610)
61 PRK01773 hscB co-chaperone Hsc 99.2 9.8E-11 2.1E-15 98.6 7.8 66 61-126 2-74 (173)
62 TIGR00714 hscB Fe-S protein as 99.0 7.6E-10 1.7E-14 91.9 7.0 55 73-127 3-62 (157)
63 KOG1150 Predicted molecular ch 98.9 1.8E-09 4E-14 91.3 6.4 63 60-122 52-115 (250)
64 COG5269 ZUO1 Ribosome-associat 98.8 5.6E-09 1.2E-13 92.2 6.4 69 60-128 42-115 (379)
65 KOG1789 Endocytosis protein RM 98.5 1.1E-07 2.5E-12 96.4 6.1 60 54-116 1274-1337(2235)
66 PF13459 Fer4_15: 4Fe-4S singl 98.5 7.7E-08 1.7E-12 68.0 2.0 57 141-201 1-65 (65)
67 KOG0723 Molecular chaperone (D 98.4 4.5E-07 9.9E-12 69.4 5.7 58 56-117 51-108 (112)
68 KOG0568 Molecular chaperone (D 98.4 4.9E-07 1.1E-11 78.4 5.4 56 60-116 46-102 (342)
69 PF13370 Fer4_13: 4Fe-4S singl 98.4 1.2E-07 2.6E-12 65.7 1.1 56 143-201 1-58 (58)
70 COG1141 Fer Ferredoxin [Energy 98.3 7.4E-07 1.6E-11 63.5 3.0 58 141-202 3-67 (68)
71 KOG3192 Mitochondrial J-type c 97.6 0.00014 3.1E-09 59.5 5.8 67 59-125 6-79 (168)
72 COG1076 DjlA DnaJ-domain-conta 97.0 0.00051 1.1E-08 57.9 3.0 54 61-114 113-173 (174)
73 PF06902 Fer4_19: Divergent 4F 96.6 0.0021 4.6E-08 45.3 3.0 59 138-203 5-63 (64)
74 COG1076 DjlA DnaJ-domain-conta 96.4 0.0026 5.6E-08 53.6 2.9 70 63-132 3-79 (174)
75 PF03656 Pam16: Pam16; InterP 96.1 0.012 2.6E-07 47.2 5.2 60 56-119 53-112 (127)
76 KOG0431 Auxilin-like protein a 95.8 0.011 2.3E-07 57.2 4.5 41 72-112 399-446 (453)
77 COG3592 Uncharacterized conser 93.4 0.059 1.3E-06 38.2 2.1 61 136-203 13-73 (74)
78 PF13446 RPT: A repeated domai 89.4 0.79 1.7E-05 31.6 4.4 30 58-87 2-31 (62)
79 PF11833 DUF3353: Protein of u 83.4 2.2 4.8E-05 36.6 4.9 41 70-118 1-41 (194)
80 PF14687 DUF4460: Domain of un 79.8 4.2 9.1E-05 31.8 4.9 46 71-116 4-53 (112)
81 KOG0724 Zuotin and related mol 79.0 2 4.4E-05 39.6 3.4 53 73-125 4-60 (335)
82 PRK08348 NADH-plastoquinone ox 65.3 5 0.00011 31.3 2.2 61 139-205 35-96 (120)
83 COG2221 DsrA Dissimilatory sul 62.7 6.6 0.00014 36.2 2.7 48 152-203 146-193 (317)
84 TIGR03048 PS_I_psaC photosyste 56.3 6.7 0.00015 28.2 1.4 59 141-202 3-65 (80)
85 COG1142 HycB Fe-S-cluster-cont 51.9 6.3 0.00014 33.0 0.7 66 137-206 73-143 (165)
86 KOG3442 Uncharacterized conser 50.4 30 0.00064 27.6 4.2 60 56-119 54-113 (132)
87 CHL00065 psaC photosystem I su 49.1 7.3 0.00016 28.1 0.6 58 143-203 6-67 (81)
88 PRK09626 oorD 2-oxoglutarate-a 47.7 11 0.00024 28.5 1.5 61 139-204 9-75 (103)
89 PLN00071 photosystem I subunit 45.7 10 0.00022 27.2 0.9 58 142-202 5-66 (81)
90 TIGR02064 dsrA sulfite reducta 45.2 12 0.00025 35.9 1.5 18 187-204 247-264 (402)
91 COG5552 Uncharacterized conser 42.3 1E+02 0.0022 22.4 5.5 31 62-92 4-34 (88)
92 PF12797 Fer4_2: 4Fe-4S bindin 40.4 6.1 0.00013 21.8 -0.7 18 140-160 2-19 (22)
93 PRK10882 hydrogenase 2 protein 39.3 27 0.00058 32.5 2.8 29 190-220 193-221 (328)
94 PF13187 Fer4_9: 4Fe-4S diclus 38.5 4.7 0.0001 26.5 -1.7 11 189-199 45-55 (55)
95 PF14697 Fer4_21: 4Fe-4S diclu 37.0 25 0.00053 24.0 1.7 18 143-163 3-20 (59)
96 PRK09625 porD pyruvate flavodo 36.0 21 0.00046 28.5 1.4 70 140-215 53-122 (133)
97 PRK07569 bidirectional hydroge 35.7 51 0.0011 28.8 4.0 121 74-204 80-212 (234)
98 PF07709 SRR: Seven Residue Re 35.6 24 0.00052 17.0 1.1 13 103-115 2-14 (14)
99 PRK09623 vorD 2-ketoisovalerat 33.9 21 0.00045 27.3 1.0 58 139-203 44-102 (105)
100 PRK02651 photosystem I subunit 33.1 32 0.00069 24.5 1.9 54 145-201 8-65 (81)
101 COG1146 Ferredoxin [Energy pro 31.8 49 0.0011 22.8 2.6 57 143-204 5-63 (68)
102 TIGR00403 ndhI NADH-plastoquin 29.7 41 0.00088 28.4 2.2 65 140-207 56-127 (183)
103 PF12434 Malate_DH: Malate deh 29.6 59 0.0013 18.9 2.1 17 75-91 10-26 (28)
104 PRK05113 electron transport co 28.9 33 0.00072 29.2 1.6 58 140-204 108-166 (191)
105 PRK08222 hydrogenase 4 subunit 28.5 17 0.00038 30.6 -0.3 65 139-206 31-97 (181)
106 TIGR02163 napH_ ferredoxin-typ 28.3 48 0.001 29.4 2.6 54 144-202 199-254 (255)
107 TIGR01971 NuoI NADH-quinone ox 27.9 16 0.00034 28.3 -0.6 60 146-208 43-108 (122)
108 PRK06273 ferredoxin; Provision 27.3 29 0.00063 28.9 0.9 19 142-163 45-63 (165)
109 PRK12387 formate hydrogenlyase 27.0 29 0.00064 29.0 0.9 95 140-237 32-139 (180)
110 TIGR02936 fdxN_nitrog ferredox 26.2 25 0.00053 25.6 0.2 22 139-163 14-35 (91)
111 PRK05888 NADH dehydrogenase su 25.8 26 0.00057 28.8 0.4 58 147-207 59-122 (164)
112 cd01388 SOX-TCF_HMG-box SOX-TC 25.7 1.3E+02 0.0029 20.8 4.0 42 79-125 13-54 (72)
113 TIGR02060 aprB adenosine phosp 24.4 62 0.0013 25.9 2.3 66 141-208 3-71 (132)
114 cd00084 HMG-box High Mobility 24.0 2.1E+02 0.0047 18.6 4.8 42 79-125 12-53 (66)
115 PF12837 Fer4_6: 4Fe-4S bindin 23.7 10 0.00022 21.2 -1.7 19 142-163 3-21 (24)
116 TIGR02494 PFLE_PFLC glycyl-rad 23.7 36 0.00077 30.5 0.8 61 138-203 40-103 (295)
117 TIGR02951 DMSO_dmsB DMSO reduc 23.4 73 0.0016 25.9 2.6 58 141-204 90-153 (161)
118 PHA01516 hypothetical protein 23.3 21 0.00045 26.2 -0.6 8 255-262 73-80 (98)
119 TIGR01582 FDH-beta formate deh 23.2 47 0.001 30.2 1.6 62 140-207 118-185 (283)
120 COG2879 Uncharacterized small 22.9 1.5E+02 0.0032 20.8 3.6 27 81-109 27-53 (65)
121 PF08447 PAS_3: PAS fold; Int 22.5 36 0.00077 23.9 0.5 29 61-93 6-35 (91)
122 PF07739 TipAS: TipAS antibiot 22.1 2.7E+02 0.0058 20.8 5.5 48 68-124 51-99 (118)
123 PRK09898 hypothetical protein; 21.7 1E+02 0.0022 26.4 3.2 56 141-206 149-205 (208)
124 cd01390 HMGB-UBF_HMG-box HMGB- 21.1 2.6E+02 0.0055 18.4 4.8 41 80-125 13-53 (66)
125 PRK13984 putative oxidoreducta 20.6 56 0.0012 32.6 1.6 59 142-203 41-107 (604)
No 1
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=6.6e-26 Score=208.51 Aligned_cols=90 Identities=27% Similarity=0.412 Sum_probs=77.6
Q ss_pred CCccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcCCCCCCCc---
Q 024836 58 PSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPFDYP--- 134 (262)
Q Consensus 58 ~~~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~f~~~--- 134 (262)
|..+|||+||||+++||.+|||+|||+||++||||+|+++++|+++|++|++||+||+||++|+.||++|.+++...
T Consensus 1 ~~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~~gg~g 80 (371)
T COG0484 1 MAKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFKAGGFG 80 (371)
T ss_pred CCccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccccCCcC
Confidence 35678999999999999999999999999999999999878999999999999999999999999999987765311
Q ss_pred -----cc--chhhhhhhccc
Q 024836 135 -----EC--EALDVFVNEVL 147 (262)
Q Consensus 135 -----~~--~~~~iFv~~~~ 147 (262)
.+ +..|||-+.|.
T Consensus 81 g~g~~~fgg~~~DIF~~~Fg 100 (371)
T COG0484 81 GFGFGGFGGDFGDIFEDFFG 100 (371)
T ss_pred CCCcCCCCCCHHHHHHHhhc
Confidence 11 34667766663
No 2
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=1.1e-23 Score=189.77 Aligned_cols=75 Identities=27% Similarity=0.436 Sum_probs=70.7
Q ss_pred CCCccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcCCCCC
Q 024836 57 PPSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPF 131 (262)
Q Consensus 57 ~~~~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~f 131 (262)
....+|||+||||+++|+..|||+|||+||++||||+|++++.|.+.|++|+.||+||+||++|+.||.+|..+.
T Consensus 12 v~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GEegL 86 (336)
T KOG0713|consen 12 VLAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGEEGL 86 (336)
T ss_pred hhcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhhh
Confidence 456689999999999999999999999999999999999999999999999999999999999999999986544
No 3
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.83 E-value=7.7e-21 Score=177.61 Aligned_cols=71 Identities=25% Similarity=0.445 Sum_probs=66.9
Q ss_pred cchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcCCCCC
Q 024836 61 SSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPF 131 (262)
Q Consensus 61 ~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~f 131 (262)
.|||+||||+++||.+|||+|||+||++||||+++.++.++++|++|++||+||+||.+|+.||++|..++
T Consensus 3 ~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~~~ 73 (369)
T PRK14288 3 LSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGKKGL 73 (369)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhccccc
Confidence 68999999999999999999999999999999998767889999999999999999999999999987654
No 4
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=1.4e-20 Score=164.85 Aligned_cols=91 Identities=23% Similarity=0.364 Sum_probs=78.4
Q ss_pred ccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcCCC------CC--
Q 024836 60 TSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECID------PF-- 131 (262)
Q Consensus 60 ~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~------~f-- 131 (262)
..++|+||||+++|+.++|||+||+|+++||||++++++++.++|++||+||+||+|+.+|..||.+|.- .|
T Consensus 30 ~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~~l~l~e~fg~ 109 (279)
T KOG0716|consen 30 RLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGELGLKLAEQFGE 109 (279)
T ss_pred hhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhhHHHHHHHhhcc
Confidence 6789999999999999999999999999999999999999999999999999999999999999998532 23
Q ss_pred ---------CCcccchhhhhhhcccccc
Q 024836 132 ---------DYPECEALDVFVNEVLCVG 150 (262)
Q Consensus 132 ---------~~~~~~~~~iFv~~~~c~G 150 (262)
.+|......++++...|.+
T Consensus 110 d~~~~~~v~~~~~~~~~~a~~dll~g~~ 137 (279)
T KOG0716|consen 110 DSKIIYFVFSSPWIKATAACFDLLTGQR 137 (279)
T ss_pred cCcceEEEecchhhhHHhhhhhhhhcch
Confidence 3344445556777777665
No 5
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=1e-20 Score=172.19 Aligned_cols=69 Identities=36% Similarity=0.606 Sum_probs=64.9
Q ss_pred ccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcCCCCC
Q 024836 60 TSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPF 131 (262)
Q Consensus 60 ~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~f 131 (262)
.+.+|+||||+++|+.+|||+|||+|+++||||||++ +.++|++|.+||++|+||++|+.||++|.++.
T Consensus 3 ~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~---~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~ 71 (337)
T KOG0712|consen 3 NTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPD---AGEKFKEISQAYEVLSDPEKREIYDQYGEEGL 71 (337)
T ss_pred ccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhh
Confidence 4569999999999999999999999999999999987 67999999999999999999999999997754
No 6
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.82 E-value=1.3e-20 Score=176.12 Aligned_cols=71 Identities=27% Similarity=0.463 Sum_probs=66.0
Q ss_pred CccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcCCCC
Q 024836 59 STSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDP 130 (262)
Q Consensus 59 ~~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~ 130 (262)
..+|||+||||+++|+.+|||+|||+||++||||++++ +.|+++|++|++||+||+||++|+.||++|..+
T Consensus 2 ~~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~-~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~~ 72 (372)
T PRK14296 2 KKKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKS-PDAHDKMVEINEAADVLLDKDKRKQYDQFGHAA 72 (372)
T ss_pred CCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-chHHHHHHHHHHHHHHhcCHHHhhhhhhccchh
Confidence 45789999999999999999999999999999999975 678999999999999999999999999987654
No 7
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.81 E-value=3.3e-20 Score=173.49 Aligned_cols=72 Identities=32% Similarity=0.512 Sum_probs=67.3
Q ss_pred CccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcCCCC
Q 024836 59 STSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDP 130 (262)
Q Consensus 59 ~~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~ 130 (262)
...|||+||||+++|+.+|||+|||+|+++||||++++++.++++|++|++||+||+||.+|+.||++|.++
T Consensus 2 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g 73 (372)
T PRK14286 2 SERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGKAG 73 (372)
T ss_pred CCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCchh
Confidence 457899999999999999999999999999999999877788999999999999999999999999987654
No 8
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.80 E-value=8.4e-20 Score=172.85 Aligned_cols=73 Identities=23% Similarity=0.458 Sum_probs=65.7
Q ss_pred CCCCccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcCCCCCC
Q 024836 56 TPPSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPFD 132 (262)
Q Consensus 56 ~~~~~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~f~ 132 (262)
..+...|||+||||+++||.+|||+|||+||++||||++++ .++|++|++||++|+||.+|+.||++|..++.
T Consensus 23 ~~~~~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~----~e~F~~i~~AYevLsD~~kR~~YD~~G~~~~~ 95 (421)
T PTZ00037 23 REVDNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD----PEKFKEISRAYEVLSDPEKRKIYDEYGEEGLE 95 (421)
T ss_pred ccccchhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCch----HHHHHHHHHHHHHhccHHHHHHHhhhcchhcc
Confidence 34556799999999999999999999999999999999853 48999999999999999999999998876553
No 9
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.80 E-value=7.3e-20 Score=172.21 Aligned_cols=69 Identities=23% Similarity=0.404 Sum_probs=65.5
Q ss_pred ccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcCC
Q 024836 60 TSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECI 128 (262)
Q Consensus 60 ~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~ 128 (262)
.+|||+||||+++|+.+|||+|||+|+++||||++++++.++++|++|++||++|+||++|+.||++|.
T Consensus 8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~ 76 (392)
T PRK14279 8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETRR 76 (392)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhhh
Confidence 478999999999999999999999999999999998777889999999999999999999999999864
No 10
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.80 E-value=1.3e-19 Score=169.50 Aligned_cols=72 Identities=28% Similarity=0.498 Sum_probs=66.3
Q ss_pred CccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcCCCCC
Q 024836 59 STSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPF 131 (262)
Q Consensus 59 ~~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~f 131 (262)
...|||+||||+++|+.+|||+|||+|+++||||+++. +.++++|++|++||++|+||.+|+.||++|.+++
T Consensus 2 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~-~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~~~ 73 (371)
T PRK14287 2 SKRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKA-PDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHTDP 73 (371)
T ss_pred CCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCccc
Confidence 34689999999999999999999999999999999975 6788999999999999999999999999887643
No 11
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.79 E-value=1.8e-19 Score=168.42 Aligned_cols=72 Identities=26% Similarity=0.513 Sum_probs=66.2
Q ss_pred CccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCC-chHHHHHHHHHHHHHHhcChhHHHHHHhcCCCC
Q 024836 59 STSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDG-RDSDALIRRIIQAYEILTEYSRLEIIERECIDP 130 (262)
Q Consensus 59 ~~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~-~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~ 130 (262)
...|||+||||+++|+.+|||+|||+|+++||||+++.+ ..++++|++|++||++|+||.+|+.||++|..+
T Consensus 2 ~~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~~ 74 (369)
T PRK14282 2 EKKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYVG 74 (369)
T ss_pred CCCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCccc
Confidence 356899999999999999999999999999999999764 568899999999999999999999999987654
No 12
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.79 E-value=2.5e-19 Score=167.36 Aligned_cols=73 Identities=27% Similarity=0.517 Sum_probs=67.9
Q ss_pred CccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcCCCCC
Q 024836 59 STSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPF 131 (262)
Q Consensus 59 ~~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~f 131 (262)
...|||+||||+++|+.+|||+|||+|+++||||++++++.++++|++|++||++|+||.+|+.||++|.+++
T Consensus 2 ~~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~g~ 74 (366)
T PRK14294 2 VKRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHEGL 74 (366)
T ss_pred CCCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhccccc
Confidence 4578999999999999999999999999999999998767789999999999999999999999999987644
No 13
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.78 E-value=2.8e-19 Score=167.73 Aligned_cols=72 Identities=28% Similarity=0.540 Sum_probs=67.2
Q ss_pred ccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcCCCCC
Q 024836 60 TSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPF 131 (262)
Q Consensus 60 ~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~f 131 (262)
..|||+||||+++|+.+|||+|||+|+++||||+++.++.++++|++|++||++|+||.+|+.||++|..++
T Consensus 3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~~~ 74 (380)
T PRK14297 3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTADF 74 (380)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCcccc
Confidence 468999999999999999999999999999999998777889999999999999999999999999886544
No 14
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.78 E-value=4e-19 Score=166.99 Aligned_cols=72 Identities=31% Similarity=0.563 Sum_probs=67.0
Q ss_pred ccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcCCCCC
Q 024836 60 TSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPF 131 (262)
Q Consensus 60 ~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~f 131 (262)
..|||+||||+++|+.+|||+|||+|+++||||++++++.++++|++|++||++|+|+.+|..||++|.+++
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~ 75 (386)
T PRK14277 4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGHAAF 75 (386)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhccccc
Confidence 368999999999999999999999999999999998777889999999999999999999999999876543
No 15
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.78 E-value=3.2e-19 Score=166.45 Aligned_cols=71 Identities=28% Similarity=0.551 Sum_probs=66.5
Q ss_pred cchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcCCCCC
Q 024836 61 SSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPF 131 (262)
Q Consensus 61 ~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~f 131 (262)
.|||+||||+++|+.+|||+|||+|+++||||++++++.++++|++|++||++|+|+.+|..||++|..++
T Consensus 3 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~~~ 73 (365)
T PRK14285 3 RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGHTAF 73 (365)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCcchh
Confidence 58999999999999999999999999999999998777889999999999999999999999999876543
No 16
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.78 E-value=3.8e-19 Score=166.83 Aligned_cols=71 Identities=27% Similarity=0.473 Sum_probs=66.0
Q ss_pred ccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcCCCCC
Q 024836 60 TSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPF 131 (262)
Q Consensus 60 ~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~f 131 (262)
..|||+||||+++|+.+|||+|||+|+++||||++++ +.++++|++|++||++|+||.+|+.||++|.+++
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~-~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~~~ 73 (380)
T PRK14276 3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKE-PGAEEKYKEVQEAYETLSDPQKRAAYDQYGAAGA 73 (380)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-cCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCccc
Confidence 4689999999999999999999999999999999986 6788999999999999999999999999886543
No 17
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.78 E-value=3.6e-19 Score=166.60 Aligned_cols=72 Identities=29% Similarity=0.467 Sum_probs=67.1
Q ss_pred ccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcCCCCC
Q 024836 60 TSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPF 131 (262)
Q Consensus 60 ~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~f 131 (262)
..|||+||||+++|+.+|||+|||+|+++||||++++++.++++|++|++||+||+||.+|..||++|.+++
T Consensus 3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~g~ 74 (373)
T PRK14301 3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHAGV 74 (373)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhcccccc
Confidence 468999999999999999999999999999999998777788999999999999999999999999876543
No 18
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=5.5e-19 Score=165.66 Aligned_cols=72 Identities=24% Similarity=0.496 Sum_probs=66.5
Q ss_pred CccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcCCCCC
Q 024836 59 STSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPF 131 (262)
Q Consensus 59 ~~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~f 131 (262)
...|||+||||+++|+.+|||+|||+|+++||||++++ +.++++|++|++||++|+|+.+|..||++|..++
T Consensus 3 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~-~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~g~ 74 (378)
T PRK14283 3 EKRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEE-EGAEEKFKEISEAYAVLSDDEKRQRYDQFGHAGM 74 (378)
T ss_pred CcCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHhchhHHHHHHhhhccccc
Confidence 35789999999999999999999999999999999986 6789999999999999999999999999876543
No 19
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=6.2e-19 Score=165.17 Aligned_cols=71 Identities=28% Similarity=0.512 Sum_probs=65.7
Q ss_pred ccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcCCCCC
Q 024836 60 TSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPF 131 (262)
Q Consensus 60 ~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~f 131 (262)
.+|||+||||+++|+.+|||+|||+||++||||++++ +.++++|++|++||++|+||.+|+.||++|.+++
T Consensus 4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~-~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~ 74 (377)
T PRK14298 4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKE-PDAEEKFKEISEAYAVLSDAEKRAQYDRFGHAGI 74 (377)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCC-hhHHHHHHHHHHHHHHhcchHhhhhhhhcCcccc
Confidence 4689999999999999999999999999999999975 6788999999999999999999999999886543
No 20
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=8e-19 Score=165.05 Aligned_cols=72 Identities=26% Similarity=0.520 Sum_probs=67.1
Q ss_pred ccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHh----cCCCCC
Q 024836 60 TSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIER----ECIDPF 131 (262)
Q Consensus 60 ~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~----~~~~~f 131 (262)
..|||+||||+++|+.+|||+|||+|+++||||+++.++.++++|++|++||++|+||.+|+.||+ +|..++
T Consensus 8 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~~~~~G~~g~ 83 (389)
T PRK14295 8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDEARSLFGNGGF 83 (389)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHHHHhhhccccc
Confidence 468999999999999999999999999999999998767789999999999999999999999998 776655
No 21
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=9.1e-19 Score=158.87 Aligned_cols=69 Identities=32% Similarity=0.552 Sum_probs=64.8
Q ss_pred ccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcCCC
Q 024836 60 TSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECID 129 (262)
Q Consensus 60 ~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 129 (262)
..|||+||||+++|+.+|||+|||+|+++||||++++ +.++++|++|++||++|+|+.+|..||++|..
T Consensus 3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~-~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~ 71 (291)
T PRK14299 3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKS-PGAEEKFKEINEAYTVLSDPEKRRIYDTYGTT 71 (291)
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCc
Confidence 4689999999999999999999999999999999974 67889999999999999999999999998764
No 22
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=8.1e-19 Score=164.41 Aligned_cols=70 Identities=31% Similarity=0.547 Sum_probs=65.4
Q ss_pred ccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcCCCC
Q 024836 60 TSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDP 130 (262)
Q Consensus 60 ~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~ 130 (262)
..|||+||||+++|+.+|||+|||+|+++||||++++ +.++++|++|++||++|+||.+|+.||++|..+
T Consensus 3 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~-~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~ 72 (376)
T PRK14280 3 KRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKE-EGADEKFKEISEAYEVLSDDQKRAQYDQFGHAG 72 (376)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHhccHhHHHHHHhcCccc
Confidence 4689999999999999999999999999999999976 578899999999999999999999999988654
No 23
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.76 E-value=8.2e-19 Score=164.14 Aligned_cols=73 Identities=27% Similarity=0.519 Sum_probs=67.6
Q ss_pred CccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcCCCCC
Q 024836 59 STSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPF 131 (262)
Q Consensus 59 ~~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~f 131 (262)
+..|||+||||+++|+.+|||+|||+|+++||||++++++.++++|++|++||++|+|+.+|..||++|..++
T Consensus 2 ~~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~ 74 (371)
T PRK10767 2 AKRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHAAF 74 (371)
T ss_pred CCCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhcccccc
Confidence 3568999999999999999999999999999999998767788999999999999999999999999876544
No 24
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.76 E-value=8.9e-19 Score=164.92 Aligned_cols=69 Identities=32% Similarity=0.551 Sum_probs=65.7
Q ss_pred chhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcCCCC
Q 024836 62 SAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDP 130 (262)
Q Consensus 62 ~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~ 130 (262)
|||+||||+++|+.+|||+|||+|+++||||++++++.++++|++|++||++|+|+.+|+.||++|.++
T Consensus 2 d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g 70 (391)
T PRK14284 2 DYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKDG 70 (391)
T ss_pred CHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhccccc
Confidence 799999999999999999999999999999999977789999999999999999999999999988654
No 25
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.76 E-value=9.3e-19 Score=164.07 Aligned_cols=68 Identities=32% Similarity=0.549 Sum_probs=64.2
Q ss_pred cchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcCCC
Q 024836 61 SSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECID 129 (262)
Q Consensus 61 ~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 129 (262)
+|||+||||+++|+.+|||+|||+|+++||||++++ +.++++|++|++||++|+|+.+|..||++|.+
T Consensus 3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~-~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~ 70 (378)
T PRK14278 3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPD-EEAQEKFKEISVAYEVLSDPEKRRIVDLGGDP 70 (378)
T ss_pred CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCc-HHHHHHHHHHHHHHHHhchhhhhhhhhccCCc
Confidence 589999999999999999999999999999999985 67889999999999999999999999998754
No 26
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.76 E-value=1.5e-18 Score=122.52 Aligned_cols=63 Identities=40% Similarity=0.665 Sum_probs=59.8
Q ss_pred chhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCc-hHHHHHHHHHHHHHHhcChhHHHHHH
Q 024836 62 SAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGR-DSDALIRRIIQAYEILTEYSRLEIIE 124 (262)
Q Consensus 62 ~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~-~a~~~f~~i~~Ay~~L~d~~~R~~Yd 124 (262)
|+|+||||+++++.++||++|+++++++|||++.... .+.+.|..|++||++|+||.+|+.||
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 5899999999999999999999999999999988764 57899999999999999999999998
No 27
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.76 E-value=1.3e-18 Score=163.29 Aligned_cols=70 Identities=27% Similarity=0.581 Sum_probs=65.5
Q ss_pred cchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcCCCCC
Q 024836 61 SSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPF 131 (262)
Q Consensus 61 ~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~f 131 (262)
.|||+||||+++|+.+|||+|||+|+++||||++++ +.++++|++|++||++|+||.+|+.||++|.+++
T Consensus 3 ~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~-~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~~~ 72 (382)
T PRK14291 3 KDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKN-PEAEEKFKEINEAYQVLSDPEKRKLYDQFGHAAF 72 (382)
T ss_pred CCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-ccHHHHHHHHHHHHHHhcCHHHHHHHhhhccccc
Confidence 689999999999999999999999999999999986 6788999999999999999999999999886543
No 28
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=1.6e-18 Score=156.65 Aligned_cols=74 Identities=32% Similarity=0.551 Sum_probs=68.1
Q ss_pred CCCCccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcCCCC
Q 024836 56 TPPSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDP 130 (262)
Q Consensus 56 ~~~~~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~ 130 (262)
.++...|||+||||+++|+..|||+||++|+|+||||.+.++ .+.++|++|.+||+||+|+++|..||..+..+
T Consensus 38 ~~~~~~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~-~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~ 111 (288)
T KOG0715|consen 38 RIISKEDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDK-EASKKFKEISEAYEILSDEEKRQEYDVYGLEQ 111 (288)
T ss_pred ccCCCcchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCc-chhhHHHHHHHHHHHhcCHHHHHHHHHhhhhc
Confidence 344555899999999999999999999999999999999985 88999999999999999999999999987654
No 29
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.75 E-value=1.5e-18 Score=163.63 Aligned_cols=71 Identities=27% Similarity=0.480 Sum_probs=66.4
Q ss_pred cchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcCCCCC
Q 024836 61 SSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPF 131 (262)
Q Consensus 61 ~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~f 131 (262)
.|||+||||+++|+.+|||+|||+|+++||||+++++..++++|++|++||++|+|+.+|..||++|..++
T Consensus 3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~~~ 73 (397)
T PRK14281 3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAGV 73 (397)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccchhh
Confidence 58999999999999999999999999999999998777788999999999999999999999999876543
No 30
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.73 E-value=5.5e-18 Score=159.35 Aligned_cols=71 Identities=25% Similarity=0.485 Sum_probs=66.7
Q ss_pred ccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcCCCC
Q 024836 60 TSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDP 130 (262)
Q Consensus 60 ~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~ 130 (262)
..|||+||||+++|+.+|||+|||+|+++||||++++++.++++|++|++||++|+||.+|..||++|..+
T Consensus 4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~~ 74 (386)
T PRK14289 4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHAG 74 (386)
T ss_pred cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccc
Confidence 46899999999999999999999999999999999877789999999999999999999999999987643
No 31
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.73 E-value=5.2e-18 Score=158.44 Aligned_cols=71 Identities=28% Similarity=0.562 Sum_probs=66.2
Q ss_pred cchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCc-hHHHHHHHHHHHHHHhcChhHHHHHHhcCCCCC
Q 024836 61 SSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGR-DSDALIRRIIQAYEILTEYSRLEIIERECIDPF 131 (262)
Q Consensus 61 ~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~-~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~f 131 (262)
.|||+||||+++|+.+|||+|||+|+++||||+++++. .++++|++|++||++|+|+.+|..||++|..++
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~~~ 74 (365)
T PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTVDF 74 (365)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCCccc
Confidence 58999999999999999999999999999999998654 788999999999999999999999999887655
No 32
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=6.7e-18 Score=156.99 Aligned_cols=71 Identities=30% Similarity=0.477 Sum_probs=65.5
Q ss_pred CCCccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCC-chHHHHHHHHHHHHHHhcChhHHHHHHhcC
Q 024836 57 PPSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDG-RDSDALIRRIIQAYEILTEYSRLEIIEREC 127 (262)
Q Consensus 57 ~~~~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~-~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~ 127 (262)
+...+.||+||||.++|+..+||++||+||++||||++++. .++++.|+.|+.||+|||||..|.+||.+.
T Consensus 4 ~~~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hr 75 (508)
T KOG0717|consen 4 PFKKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHR 75 (508)
T ss_pred chhhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHH
Confidence 34467899999999999999999999999999999998875 578999999999999999999999999874
No 33
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=1.1e-17 Score=150.68 Aligned_cols=71 Identities=27% Similarity=0.474 Sum_probs=67.4
Q ss_pred ccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcCCCC
Q 024836 60 TSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDP 130 (262)
Q Consensus 60 ~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~ 130 (262)
..|||+||||+.+++..|||+|||.++++||||+|+++|.|.++|+.|.+||+||+|+..|..||..+-.+
T Consensus 4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~ 74 (296)
T KOG0691|consen 4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKSG 74 (296)
T ss_pred cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc
Confidence 56899999999999999999999999999999999999999999999999999999999999999976543
No 34
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.72 E-value=1.1e-17 Score=156.61 Aligned_cols=70 Identities=34% Similarity=0.566 Sum_probs=64.9
Q ss_pred cchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcCCCCC
Q 024836 61 SSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPF 131 (262)
Q Consensus 61 ~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~f 131 (262)
.|||+||||+++|+.+|||+|||+|+++||||+++. +.++++|++|++||++|+|+.+|..||++|..++
T Consensus 3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~-~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~ 72 (372)
T PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDA-KDAEKKFKEINAAYDVLKDEQKRAAYDRFGHDAF 72 (372)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-cCHHHHHHHHHHHHHHhhhHhHhhHHHhcccccc
Confidence 589999999999999999999999999999999874 5688999999999999999999999999876543
No 35
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.71 E-value=1.2e-17 Score=155.37 Aligned_cols=69 Identities=32% Similarity=0.564 Sum_probs=64.0
Q ss_pred chhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcCCCCC
Q 024836 62 SAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPF 131 (262)
Q Consensus 62 ~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~f 131 (262)
|||+||||+++|+.+|||+|||+|+++||||+++ .+.++++|++|++||++|+|+.+|..||++|..++
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~ 69 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNK-DKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAGF 69 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCC-CccHHHHHHHHHHHHHHhhChHHHHhhhhcccccc
Confidence 6999999999999999999999999999999997 36688999999999999999999999999876543
No 36
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.71 E-value=2e-17 Score=165.58 Aligned_cols=75 Identities=19% Similarity=0.305 Sum_probs=68.7
Q ss_pred CCCccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcCCCCCC
Q 024836 57 PPSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPFD 132 (262)
Q Consensus 57 ~~~~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~f~ 132 (262)
....++||+||||+++|+..+||+|||+||++||||+++++ .+.++|+.|++||++|+||.+|+.||.+|..+..
T Consensus 569 ~~~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~-~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~Gl~ 643 (1136)
T PTZ00341 569 EIPDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGN-EGFHKFKKINEAYQILGDIDKKKMYNKFGYDGIK 643 (1136)
T ss_pred cCCCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHhCCHHHHHHHhhccccccC
Confidence 34468999999999999999999999999999999999875 6889999999999999999999999999877643
No 37
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.71 E-value=2.1e-17 Score=154.72 Aligned_cols=69 Identities=30% Similarity=0.541 Sum_probs=64.5
Q ss_pred cchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcCCCC
Q 024836 61 SSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDP 130 (262)
Q Consensus 61 ~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~ 130 (262)
.|||+||||+++|+.++||+|||+|+++||||++++ ..++++|++|++||++|+||.+|+.||++|..+
T Consensus 2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~-~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~~ 70 (371)
T PRK14292 2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKE-KGAAEKFAQINEAYAVLSDAEKRAHYDRFGTAP 70 (371)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-hhHHHHHHHHHHHHHHhcchhhhhhHhhcCCcc
Confidence 479999999999999999999999999999999985 578899999999999999999999999988654
No 38
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.71 E-value=1.8e-17 Score=151.40 Aligned_cols=68 Identities=29% Similarity=0.582 Sum_probs=63.6
Q ss_pred ccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcCC
Q 024836 60 TSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECI 128 (262)
Q Consensus 60 ~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~ 128 (262)
..|||+||||+++++.+|||+|||+|+++||||+++. +.++++|++|++||++|+|+.+|..||.++.
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~-~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~ 70 (306)
T PRK10266 3 LKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKE-PDAEARFKEVAEAWEVLSDEQRRAEYDQLWQ 70 (306)
T ss_pred cCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHhhhHHHHHHHHHhhc
Confidence 4689999999999999999999999999999999875 5789999999999999999999999999763
No 39
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=2.4e-17 Score=153.41 Aligned_cols=76 Identities=24% Similarity=0.431 Sum_probs=68.8
Q ss_pred CCCccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCC---chHHHHHHHHHHHHHHhcChhHHHHHHhcCCCCCC
Q 024836 57 PPSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDG---RDSDALIRRIIQAYEILTEYSRLEIIERECIDPFD 132 (262)
Q Consensus 57 ~~~~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~---~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~f~ 132 (262)
...+.++|.+|+|+++|+.+|||+|||++++.|||||..++ ..|+++|++|.+|||||+||.+|.+||.+|..|..
T Consensus 5 e~~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL~ 83 (546)
T KOG0718|consen 5 ELDEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGLK 83 (546)
T ss_pred ccchhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhcccc
Confidence 34567899999999999999999999999999999998854 46899999999999999999999999999876653
No 40
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.69 E-value=3.3e-17 Score=153.50 Aligned_cols=70 Identities=30% Similarity=0.505 Sum_probs=65.1
Q ss_pred cchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcCCCCC
Q 024836 61 SSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPF 131 (262)
Q Consensus 61 ~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~f 131 (262)
.|||+||||+++|+.+|||+|||+|+++||||+++. +.++++|++|++||++|+||.+|+.||.+|..++
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~-~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~g~ 72 (374)
T PRK14293 3 ADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKE-PGAEDRFKEINRAYEVLSDPETRARYDQFGEAGV 72 (374)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-cCHHHHHHHHHHHHHHHhchHHHHHHhhcccccc
Confidence 589999999999999999999999999999999876 5788999999999999999999999999886543
No 41
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.67 E-value=1e-16 Score=111.32 Aligned_cols=58 Identities=34% Similarity=0.602 Sum_probs=54.0
Q ss_pred cchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCC-CchHHHHHHHHHHHHHHhcChh
Q 024836 61 SSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRD-GRDSDALIRRIIQAYEILTEYS 118 (262)
Q Consensus 61 ~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~-~~~a~~~f~~i~~Ay~~L~d~~ 118 (262)
.+||+||||+++++.++||++|++|++++|||++++ .+.+.+.|+.|++||++|+||.
T Consensus 1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~ 59 (60)
T smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPE 59 (60)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCC
Confidence 369999999999999999999999999999999986 4678899999999999999985
No 42
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.66 E-value=2.8e-16 Score=107.20 Aligned_cols=55 Identities=40% Similarity=0.727 Sum_probs=51.6
Q ss_pred chhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcC
Q 024836 62 SAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTE 116 (262)
Q Consensus 62 ~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d 116 (262)
|||+||||+++++.++||++||+|++++|||++++...+.+.|++|++||++|+|
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence 5899999999999999999999999999999998755678999999999999986
No 43
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=1.7e-16 Score=136.36 Aligned_cols=70 Identities=23% Similarity=0.468 Sum_probs=64.3
Q ss_pred CccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCC--CCchHHHHHHHHHHHHHHhcChhHHHHHHhcCC
Q 024836 59 STSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNR--DGRDSDALIRRIIQAYEILTEYSRLEIIERECI 128 (262)
Q Consensus 59 ~~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~--~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~ 128 (262)
...++|+||||.++|+..+|++||++|++++|||+++ +..++.+.|+.|+.||+||+|.++|+.||..|.
T Consensus 12 ~~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~ 83 (264)
T KOG0719|consen 12 NKKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGS 83 (264)
T ss_pred cccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCC
Confidence 3458999999999999999999999999999999995 335788999999999999999999999999774
No 44
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=3.4e-16 Score=133.39 Aligned_cols=72 Identities=29% Similarity=0.458 Sum_probs=66.3
Q ss_pred CCCccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcCC
Q 024836 57 PPSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECI 128 (262)
Q Consensus 57 ~~~~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~ 128 (262)
....-|+|+||||+++++.+|||+|||+|+++|||||++.....++.|..|.+||+.|+|+..|++|..+|.
T Consensus 95 ~~~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~ 166 (230)
T KOG0721|consen 95 ERQKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEKYGN 166 (230)
T ss_pred HhhcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHHhCC
Confidence 344578999999999999999999999999999999998866778999999999999999999999999774
No 45
>PHA03102 Small T antigen; Reviewed
Probab=99.63 E-value=5.8e-16 Score=127.27 Aligned_cols=66 Identities=18% Similarity=0.265 Sum_probs=60.7
Q ss_pred cchhhhhCCCCCC--CHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcCCCC
Q 024836 61 SSAYAILGVEPSC--SAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDP 130 (262)
Q Consensus 61 ~~~Y~iLgl~~~a--s~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~ 130 (262)
+.+|+||||+++| |..+||+|||++++++|||++++ +++|++|++||++|+|+.+|..||.+|.+.
T Consensus 5 ~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~----~e~~k~in~Ay~~L~d~~~r~~yd~~g~~~ 72 (153)
T PHA03102 5 KELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGD----EEKMKELNTLYKKFRESVKSLRDLDGEEDS 72 (153)
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCch----hHHHHHHHHHHHHHhhHHHhccccccCCcc
Confidence 5689999999999 99999999999999999999654 579999999999999999999999987654
No 46
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.61 E-value=1.1e-15 Score=150.26 Aligned_cols=72 Identities=28% Similarity=0.490 Sum_probs=66.8
Q ss_pred cchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcCCCCCCC
Q 024836 61 SSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPFDY 133 (262)
Q Consensus 61 ~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~f~~ 133 (262)
.|||+||||+++|+..+||++||+|+++||||+++. +.+.++|++|++||++|+|+.+|..||.++..++..
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~-~eAeekFqeINEAYEVLSDP~KRa~YD~fG~aG~d~ 73 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKA-PDAASIFAEINEANDVLSNPKKRANYDKYGHDGVDR 73 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHhCCHHHHHHHhhhccccccc
Confidence 579999999999999999999999999999999887 677889999999999999999999999998776653
No 47
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.61 E-value=1.4e-15 Score=137.92 Aligned_cols=73 Identities=27% Similarity=0.466 Sum_probs=65.9
Q ss_pred CccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCc---hHHHHHHHHHHHHHHhcChhHHHHHHhcCCCCCC
Q 024836 59 STSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGR---DSDALIRRIIQAYEILTEYSRLEIIERECIDPFD 132 (262)
Q Consensus 59 ~~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~---~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~f~ 132 (262)
..+|||+||||.++|+..||.+|||+|+.+||||...+.+ .|+.+|..|..|-+||+||++|+.+|. |.||.+
T Consensus 392 ~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDn-GeDPLD 467 (504)
T KOG0624|consen 392 GKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDN-GEDPLD 467 (504)
T ss_pred ccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccC-CCCCCC
Confidence 3579999999999999999999999999999999988753 688999999999999999999999998 555554
No 48
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=4.8e-15 Score=126.30 Aligned_cols=68 Identities=34% Similarity=0.537 Sum_probs=64.1
Q ss_pred CccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCch-HHHHHHHHHHHHHHhcChhHHHHHHhc
Q 024836 59 STSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRD-SDALIRRIIQAYEILTEYSRLEIIERE 126 (262)
Q Consensus 59 ~~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~-a~~~f~~i~~Ay~~L~d~~~R~~Yd~~ 126 (262)
...++|+||||.++|+..|||++||+++++||||+++.++. +.+.|+.|++||++|+|+.+|..||..
T Consensus 4 ~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~ 72 (237)
T COG2214 4 DLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKI 72 (237)
T ss_pred hhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhh
Confidence 35689999999999999999999999999999999998775 899999999999999999999999985
No 49
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.50 E-value=5.6e-14 Score=118.13 Aligned_cols=65 Identities=15% Similarity=0.220 Sum_probs=57.7
Q ss_pred chhhhhCCCCC--CCHHHHHHHHHHHHHhhCCCCCCCCc-----hHHHHHHHHHHHHHHhcChhHHHHHHhc
Q 024836 62 SAYAILGVEPS--CSAAELKAAFRAKVKQYHPDVNRDGR-----DSDALIRRIIQAYEILTEYSRLEIIERE 126 (262)
Q Consensus 62 ~~Y~iLgl~~~--as~~eIK~ayr~l~~~~HPD~~~~~~-----~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~ 126 (262)
|||+||||++. ++..+||++||+|++++|||+....+ .+.+.+..||+||++|+||.+|..|+-.
T Consensus 2 ~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~ 73 (171)
T PRK05014 2 DYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLS 73 (171)
T ss_pred CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHH
Confidence 79999999996 68899999999999999999976543 2567899999999999999999999863
No 50
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.48 E-value=9.8e-14 Score=116.10 Aligned_cols=66 Identities=17% Similarity=0.232 Sum_probs=57.4
Q ss_pred cchhhhhCCCCC--CCHHHHHHHHHHHHHhhCCCCCCCCc---hHHHHHHHHHHHHHHhcChhHHHHHHhc
Q 024836 61 SSAYAILGVEPS--CSAAELKAAFRAKVKQYHPDVNRDGR---DSDALIRRIIQAYEILTEYSRLEIIERE 126 (262)
Q Consensus 61 ~~~Y~iLgl~~~--as~~eIK~ayr~l~~~~HPD~~~~~~---~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~ 126 (262)
.|||+||||++. ++..+|+++||+|++++|||+..... .+...+..|++||+||+||.+|..|+..
T Consensus 2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~ 72 (166)
T PRK01356 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYMLL 72 (166)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 479999999986 78999999999999999999987532 2335678999999999999999999874
No 51
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.47 E-value=1.5e-13 Score=115.62 Aligned_cols=68 Identities=21% Similarity=0.311 Sum_probs=60.0
Q ss_pred CccchhhhhCCCCC--CCHHHHHHHHHHHHHhhCCCCCCCCch-----HHHHHHHHHHHHHHhcChhHHHHHHhc
Q 024836 59 STSSAYAILGVEPS--CSAAELKAAFRAKVKQYHPDVNRDGRD-----SDALIRRIIQAYEILTEYSRLEIIERE 126 (262)
Q Consensus 59 ~~~~~Y~iLgl~~~--as~~eIK~ayr~l~~~~HPD~~~~~~~-----a~~~f~~i~~Ay~~L~d~~~R~~Yd~~ 126 (262)
...+||++|||++. .+..+|+++||+|++++|||++.+.+. +.+.+..||+||++|+||.+|..|+-.
T Consensus 2 ~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~ 76 (173)
T PRK00294 2 GTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLA 76 (173)
T ss_pred CCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHHH
Confidence 45689999999997 678999999999999999999876532 557899999999999999999999863
No 52
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.46 E-value=1.7e-13 Score=115.73 Aligned_cols=66 Identities=23% Similarity=0.328 Sum_probs=57.7
Q ss_pred ccchhhhhCCCCC--CCHHHHHHHHHHHHHhhCCCCCCCCchHH-----HHHHHHHHHHHHhcChhHHHHHHh
Q 024836 60 TSSAYAILGVEPS--CSAAELKAAFRAKVKQYHPDVNRDGRDSD-----ALIRRIIQAYEILTEYSRLEIIER 125 (262)
Q Consensus 60 ~~~~Y~iLgl~~~--as~~eIK~ayr~l~~~~HPD~~~~~~~a~-----~~f~~i~~Ay~~L~d~~~R~~Yd~ 125 (262)
..|||+||||++. ++..+|+++||+|++++|||+....+.++ +.+..||+||++|+||.+|..|..
T Consensus 5 ~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll 77 (176)
T PRK03578 5 KDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLL 77 (176)
T ss_pred CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHH
Confidence 3689999999985 68999999999999999999987654433 446899999999999999999986
No 53
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.44 E-value=2.4e-13 Score=106.56 Aligned_cols=56 Identities=27% Similarity=0.479 Sum_probs=50.5
Q ss_pred CCCCccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhc
Q 024836 56 TPPSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILT 115 (262)
Q Consensus 56 ~~~~~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~ 115 (262)
..|+..++|+||||+++++.+|||++||+|++++|||+.++ .+.|++|++||++|.
T Consensus 60 ~~Ms~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkgGs----~~~~~kIneAyevL~ 115 (116)
T PTZ00100 60 NPMSKSEAYKILNISPTASKERIREAHKQLMLRNHPDNGGS----TYIASKVNEAKDLLL 115 (116)
T ss_pred CCCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHHh
Confidence 46777899999999999999999999999999999998533 578999999999995
No 54
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=2.2e-13 Score=127.08 Aligned_cols=69 Identities=26% Similarity=0.445 Sum_probs=64.7
Q ss_pred CCccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcC
Q 024836 58 PSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIEREC 127 (262)
Q Consensus 58 ~~~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~ 127 (262)
.+..|+|.+|||..+++.++||+.||++|...|||||.. +.|++.|+.|+.||++|+|+++|..||...
T Consensus 232 ~~~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~-~~A~Eafk~Lq~Afevig~~~kR~eYd~e~ 300 (490)
T KOG0720|consen 232 LNILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMI-PRAEEAFKKLQVAFEVIGDSVKRKEYDLEL 300 (490)
T ss_pred hcCCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCC-hhHHHHHHHHHHHHHHhcchhhhhHHHHHH
Confidence 346899999999999999999999999999999999995 789999999999999999999999999853
No 55
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=1.6e-13 Score=119.60 Aligned_cols=67 Identities=31% Similarity=0.525 Sum_probs=61.8
Q ss_pred ccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcC
Q 024836 60 TSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIEREC 127 (262)
Q Consensus 60 ~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~ 127 (262)
..|.|+||||.++++..||++|||+|+++||||++++. ++.+.|+.|..||++|.|.+.|..||-..
T Consensus 32 ~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~-e~k~~F~~iAtayeilkd~e~rt~ydyal 98 (329)
T KOG0722|consen 32 AENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDP-ESKKLFVKIATAYEILKDNETRTQYDYAL 98 (329)
T ss_pred chhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCc-hhhhhhhhhhcccccccchhhHHhHHHHh
Confidence 46799999999999999999999999999999999985 45589999999999999999999999743
No 56
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=5.9e-13 Score=123.23 Aligned_cols=67 Identities=27% Similarity=0.440 Sum_probs=63.5
Q ss_pred ccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCC-chHHHHHHHHHHHHHHhcChhHHHHHHhc
Q 024836 60 TSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDG-RDSDALIRRIIQAYEILTEYSRLEIIERE 126 (262)
Q Consensus 60 ~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~-~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~ 126 (262)
..++|.|||+.+.++..|||++||++++.+|||++... .+++.+|++|.+||.||+||.+|..||..
T Consensus 372 Rkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg 439 (486)
T KOG0550|consen 372 RKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSG 439 (486)
T ss_pred hhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhcccc
Confidence 46899999999999999999999999999999999887 68899999999999999999999999984
No 57
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.34 E-value=1.4e-12 Score=116.96 Aligned_cols=60 Identities=30% Similarity=0.463 Sum_probs=53.3
Q ss_pred CCCccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCC-------chHHHHHHHHHHHHHHhcC
Q 024836 57 PPSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDG-------RDSDALIRRIIQAYEILTE 116 (262)
Q Consensus 57 ~~~~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~-------~~a~~~f~~i~~Ay~~L~d 116 (262)
.++..++|+||||++++|.+|||++||+|+++||||+..+. +.++++|++|++||++|+.
T Consensus 196 ~~~~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~ 262 (267)
T PRK09430 196 GPTLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK 262 (267)
T ss_pred CCcHHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 45668999999999999999999999999999999997532 3578999999999999975
No 58
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=2.1e-12 Score=114.99 Aligned_cols=71 Identities=30% Similarity=0.497 Sum_probs=63.4
Q ss_pred ccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCC-chHHHHHHHHHHHHHHhcChhHHHHHHhcCCCC
Q 024836 60 TSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDG-RDSDALIRRIIQAYEILTEYSRLEIIERECIDP 130 (262)
Q Consensus 60 ~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~-~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~ 130 (262)
..++|+||||.++|+..+||+||+++++++|||+++.. ..++.+|++|.+||++|+|+.+|..||+++.++
T Consensus 2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~~~ 73 (306)
T KOG0714|consen 2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGEEG 73 (306)
T ss_pred cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCccc
Confidence 35799999999999999999999999999999998775 245568999999999999999999999988543
No 59
>PHA02624 large T antigen; Provisional
Probab=99.23 E-value=1.2e-11 Score=120.67 Aligned_cols=60 Identities=23% Similarity=0.406 Sum_probs=55.9
Q ss_pred ccchhhhhCCCCCC--CHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHH
Q 024836 60 TSSAYAILGVEPSC--SAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEII 123 (262)
Q Consensus 60 ~~~~Y~iLgl~~~a--s~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Y 123 (262)
..++|++|||+++| +..+||+|||+++++||||++++ +++|++|++||++|+|+.+|..|
T Consensus 10 ~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgGd----eekfk~Ln~AYevL~d~~k~~r~ 71 (647)
T PHA02624 10 SKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGD----EEKMKRLNSLYKKLQEGVKSARQ 71 (647)
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCc----HHHHHHHHHHHHHHhcHHHhhhc
Confidence 46799999999999 99999999999999999999643 58999999999999999999998
No 60
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=99.18 E-value=2.8e-11 Score=112.89 Aligned_cols=69 Identities=25% Similarity=0.381 Sum_probs=63.0
Q ss_pred ccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCC-----chHHHHHHHHHHHHHHhcChhHHHHHHhcCC
Q 024836 60 TSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDG-----RDSDALIRRIIQAYEILTEYSRLEIIERECI 128 (262)
Q Consensus 60 ~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~-----~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~ 128 (262)
.-|+|||||++.+++..+||++||+|+.++||||.+.- .+-++.+++|++||+.|+|...|+.|-.+|.
T Consensus 97 ~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGt 170 (610)
T COG5407 97 GFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGT 170 (610)
T ss_pred CCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCC
Confidence 45799999999999999999999999999999998752 4677999999999999999999999999874
No 61
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=99.16 E-value=9.8e-11 Score=98.57 Aligned_cols=66 Identities=17% Similarity=0.124 Sum_probs=57.6
Q ss_pred cchhhhhCCCCC--CCHHHHHHHHHHHHHhhCCCCCCCCc-----hHHHHHHHHHHHHHHhcChhHHHHHHhc
Q 024836 61 SSAYAILGVEPS--CSAAELKAAFRAKVKQYHPDVNRDGR-----DSDALIRRIIQAYEILTEYSRLEIIERE 126 (262)
Q Consensus 61 ~~~Y~iLgl~~~--as~~eIK~ayr~l~~~~HPD~~~~~~-----~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~ 126 (262)
.|||++|||++. .+..+++++|++|++++|||+..... .+.+....||+||.+|+||.+|..|=-.
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL~ 74 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAIIA 74 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHHH
Confidence 579999999986 89999999999999999999987653 2445678999999999999999999653
No 62
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=99.01 E-value=7.6e-10 Score=91.87 Aligned_cols=55 Identities=20% Similarity=0.209 Sum_probs=47.8
Q ss_pred CCHHHHHHHHHHHHHhhCCCCCCCCc-----hHHHHHHHHHHHHHHhcChhHHHHHHhcC
Q 024836 73 CSAAELKAAFRAKVKQYHPDVNRDGR-----DSDALIRRIIQAYEILTEYSRLEIIEREC 127 (262)
Q Consensus 73 as~~eIK~ayr~l~~~~HPD~~~~~~-----~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~ 127 (262)
.+..+|+++||+|++++|||+..... .+.+.+..||+||++|+||.+|..|+...
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l 62 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLSL 62 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHHh
Confidence 57889999999999999999965432 26688999999999999999999998743
No 63
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=1.8e-09 Score=91.27 Aligned_cols=63 Identities=19% Similarity=0.376 Sum_probs=58.0
Q ss_pred ccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCC-chHHHHHHHHHHHHHHhcChhHHHH
Q 024836 60 TSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDG-RDSDALIRRIIQAYEILTEYSRLEI 122 (262)
Q Consensus 60 ~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~-~~a~~~f~~i~~Ay~~L~d~~~R~~ 122 (262)
.-++|+||.|.+..+.++||+.||+|+...|||+|+++ +.|...|-.|..||..|-|+..|..
T Consensus 52 nLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr 115 (250)
T KOG1150|consen 52 NLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKR 115 (250)
T ss_pred ccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 46799999999999999999999999999999999988 6788899999999999999986654
No 64
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=5.6e-09 Score=92.17 Aligned_cols=69 Identities=23% Similarity=0.376 Sum_probs=60.4
Q ss_pred ccchhhhhCCCC---CCCHHHHHHHHHHHHHhhCCCCCC--CCchHHHHHHHHHHHHHHhcChhHHHHHHhcCC
Q 024836 60 TSSAYAILGVEP---SCSAAELKAAFRAKVKQYHPDVNR--DGRDSDALIRRIIQAYEILTEYSRLEIIERECI 128 (262)
Q Consensus 60 ~~~~Y~iLgl~~---~as~~eIK~ayr~l~~~~HPD~~~--~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~ 128 (262)
+.|+|.+|||+. .+.+.+|.++.++.+.+||||+.. ++....+.|+.|+.||+||+|+.+|..||....
T Consensus 42 ~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~df 115 (379)
T COG5269 42 KVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSNDF 115 (379)
T ss_pred hhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhcccccc
Confidence 478999999986 588999999999999999999973 334567899999999999999999999998543
No 65
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=1.1e-07 Score=96.45 Aligned_cols=60 Identities=28% Similarity=0.501 Sum_probs=51.6
Q ss_pred CCCCCCccchhhhhCCCCC----CCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcC
Q 024836 54 ASTPPSTSSAYAILGVEPS----CSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTE 116 (262)
Q Consensus 54 ~~~~~~~~~~Y~iLgl~~~----as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d 116 (262)
.+..|+..+.|+||.|+-+ -..+.||++|++|+.+||||||++. .++|.++++|||.|..
T Consensus 1274 KP~~mS~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPEG---RemFe~VnKAYE~L~~ 1337 (2235)
T KOG1789|consen 1274 KPATMSVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPEG---REMFERVNKAYELLSS 1337 (2235)
T ss_pred CCCccchHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCchH---HHHHHHHHHHHHHHHH
Confidence 3467888999999999753 3558899999999999999999764 6899999999999983
No 66
>PF13459 Fer4_15: 4Fe-4S single cluster domain
Probab=98.46 E-value=7.7e-08 Score=68.03 Aligned_cols=57 Identities=32% Similarity=0.610 Sum_probs=46.9
Q ss_pred hhhhccccccCCCCCCCCCCCCCceeeecCCCccccccC--------CCCchhHHHHHhhcCCccceEE
Q 024836 141 VFVNEVLCVGKGCPYSCVKTAPNAFSYSSSTGTARAISQ--------GHGQDYRVQLAVGQCPRSCIHY 201 (262)
Q Consensus 141 iFv~~~~c~G~Gc~~~c~~~~p~~F~~~~~~G~ar~~~q--------~~~~~~~vq~A~~~CP~~~I~~ 201 (262)
+.+|...|+|+| .|...+|..|.++.. |.+.+... .......++.|+..||++||+|
T Consensus 1 V~vD~~~C~gcg---~C~~~aP~vF~~d~~-g~a~~~~~~~~~~~~v~~~~~~~~~~Aa~~CP~~aI~v 65 (65)
T PF13459_consen 1 VWVDRDRCIGCG---LCVELAPEVFELDDD-GKAVVLVDGGEGEGEVPEEDEEDVREAAEACPVGAIHV 65 (65)
T ss_pred CEEecccCcCcc---HHHhhCCccEEECCC-CCEEEEecCcccccCCCchhHHHHHHHHHhCCHhhEEC
Confidence 457889999998 899999999999766 67766542 3455678999999999999987
No 67
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=4.5e-07 Score=69.38 Aligned_cols=58 Identities=31% Similarity=0.355 Sum_probs=51.7
Q ss_pred CCCCccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcCh
Q 024836 56 TPPSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEY 117 (262)
Q Consensus 56 ~~~~~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~ 117 (262)
+.|+....-.||||+++++.+.||+|+|+.+...|||+.+.+ -.-.+||||+++|...
T Consensus 51 ~kMsr~EA~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGSP----YlAsKINEAKdlLe~~ 108 (112)
T KOG0723|consen 51 PKMSRREAALILGVTPSLDKDKIKEAHRRIMLANHPDRGGSP----YLASKINEAKDLLEGT 108 (112)
T ss_pred cccchHHHHHHhCCCccccHHHHHHHHHHHHHcCCCcCCCCH----HHHHHHHHHHHHHhcc
Confidence 678889999999999999999999999999999999998875 3346899999999643
No 68
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=4.9e-07 Score=78.38 Aligned_cols=56 Identities=34% Similarity=0.535 Sum_probs=49.7
Q ss_pred ccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHH-HhcC
Q 024836 60 TSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYE-ILTE 116 (262)
Q Consensus 60 ~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~-~L~d 116 (262)
-..+|.||||..+|+.++++.+|..|++++|||...+ ....++|.+|.+||. +|+.
T Consensus 46 ~~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~-~adaa~f~qideafrkvlq~ 102 (342)
T KOG0568|consen 46 IMECFRILGVEEGADADEVREAFHDLAKQVHPDSGSE-EADAARFIQIDEAFRKVLQE 102 (342)
T ss_pred HHHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCc-cccHHHHHHHHHHHHHHHHH
Confidence 3579999999999999999999999999999999876 345689999999998 6654
No 69
>PF13370 Fer4_13: 4Fe-4S single cluster domain; PDB: 1FXR_A 1DAX_A 1DFD_A 1WTF_A 1IR0_A 1IQZ_A 1SIZ_A 1SJ1_A 3PNI_B 2Z8Q_A ....
Probab=98.37 E-value=1.2e-07 Score=65.68 Aligned_cols=56 Identities=30% Similarity=0.603 Sum_probs=41.4
Q ss_pred hhccccccCCCCCCCCCCCCCceeeecCCCccccccCCCCc--hhHHHHHhhcCCccceEE
Q 024836 143 VNEVLCVGKGCPYSCVKTAPNAFSYSSSTGTARAISQGHGQ--DYRVQLAVGQCPRSCIHY 201 (262)
Q Consensus 143 v~~~~c~G~Gc~~~c~~~~p~~F~~~~~~G~ar~~~q~~~~--~~~vq~A~~~CP~~~I~~ 201 (262)
||...|+|+| .|...+|..|.+++.+|.+.+..+..+. ...++.|+..||+.||+|
T Consensus 1 VD~~~Ci~Cg---~C~~~aP~vF~~~d~~~~~~v~~~~~~~~~~~~~~~A~~~CP~~aI~v 58 (58)
T PF13370_consen 1 VDRDKCIGCG---LCVEIAPDVFDYDDDGGKAVVLDQPVPEEEEEAAREAAESCPTAAIRV 58 (58)
T ss_dssp E-TTT--S-S---HHHHH-TTTEEEETTSTEEECTTCCCSHCHHHHHHHHHHHSTT--EEE
T ss_pred CChhhCcCCC---hHHHhCcHheeEcCCCCeEEEeCCCcChHHHHHHHHHHHcCCHhhcCC
Confidence 4667899998 8999999999999888888887776544 457999999999999986
No 70
>COG1141 Fer Ferredoxin [Energy production and conversion]
Probab=98.25 E-value=7.4e-07 Score=63.50 Aligned_cols=58 Identities=28% Similarity=0.550 Sum_probs=44.3
Q ss_pred hhhhccccccCCCCCCCCCCCCCceeeecCCCcccc------ccC-CCCchhHHHHHhhcCCccceEEe
Q 024836 141 VFVNEVLCVGKGCPYSCVKTAPNAFSYSSSTGTARA------ISQ-GHGQDYRVQLAVGQCPRSCIHYV 202 (262)
Q Consensus 141 iFv~~~~c~G~Gc~~~c~~~~p~~F~~~~~~G~ar~------~~q-~~~~~~~vq~A~~~CP~~~I~~v 202 (262)
+.++...|+|+| .|...+|..|.++.. |.+.. ... +-+....++.|+..||++||+|.
T Consensus 3 v~vDrd~Cigcg---~C~~~aPdvF~~~d~-G~a~~~~~~~~~~~~~~e~~~~~~~A~~~CP~~aI~v~ 67 (68)
T COG1141 3 VIVDRDTCIGCG---ACLAVAPDVFDYDDE-GIAFVLDGNIGEGEVPEELEEDAEDAAEACPTDAIKVE 67 (68)
T ss_pred EEechhhccccc---hhhhcCCcceeeCCC-cceEeccCccccccCChHHHHHHHHHHHhCCccceEec
Confidence 457888999988 899999999999655 45532 111 11233679999999999999995
No 71
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=0.00014 Score=59.51 Aligned_cols=67 Identities=21% Similarity=0.250 Sum_probs=55.2
Q ss_pred CccchhhhhCCCC--CCCHHHHHHHHHHHHHhhCCCCCCCC-----chHHHHHHHHHHHHHHhcChhHHHHHHh
Q 024836 59 STSSAYAILGVEP--SCSAAELKAAFRAKVKQYHPDVNRDG-----RDSDALIRRIIQAYEILTEYSRLEIIER 125 (262)
Q Consensus 59 ~~~~~Y~iLgl~~--~as~~eIK~ayr~l~~~~HPD~~~~~-----~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~ 125 (262)
+..+||.++|... ...+..++.-|....++.|||+.... ..+.+...++++||.+|.||-+|+.|=.
T Consensus 6 ~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yil 79 (168)
T KOG3192|consen 6 SPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLL 79 (168)
T ss_pred hHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4578999998764 46777888899999999999995432 2466778999999999999999999965
No 72
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.00 E-value=0.00051 Score=57.91 Aligned_cols=54 Identities=28% Similarity=0.442 Sum_probs=46.9
Q ss_pred cchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCC-------chHHHHHHHHHHHHHHh
Q 024836 61 SSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDG-------RDSDALIRRIIQAYEIL 114 (262)
Q Consensus 61 ~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~-------~~a~~~f~~i~~Ay~~L 114 (262)
.+.|.+||+...++..+|+++|+++...+|||+.... ..+.+.+++|++||+.+
T Consensus 113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 6799999999999999999999999999999985532 25678889999999854
No 73
>PF06902 Fer4_19: Divergent 4Fe-4S mono-cluster; InterPro: IPR010693 This entry represents bacterial ferredoxins such Ferredoxin-1, -2 and -soy from Streptomyces griseolus and Ferredoxin fas2 from Rhodococcus fascians, plus several bacterial hypothetical proteins that contain three highly conserved cysteine residues. These ferredoxins each bind a 3Fe-4S cluster. Ferredoxin-soy (SoyB) act as electron transport protein for the cytochrome P450-SOY system []. Ferredoxin-1 (SuaB) and Ferredoxin-2 (SubB) act as electron transport proteins for the herbicide-metabolising cytochrome P-450 SU1 and SU2 systems, respectively [, ]. Ferredoxin-fas2 also plays a role in electrontransfer, the fas operon encoding genes involved in cytokinin production and in host plant fasciation (leafy gall).
Probab=96.58 E-value=0.0021 Score=45.33 Aligned_cols=59 Identities=25% Similarity=0.472 Sum_probs=47.7
Q ss_pred hhhhhhhccccccCCCCCCCCCCCCCceeeecCCCccccccCCCCchhHHHHHhhcCCccceEEeC
Q 024836 138 ALDVFVNEVLCVGKGCPYSCVKTAPNAFSYSSSTGTARAISQGHGQDYRVQLAVGQCPRSCIHYVT 203 (262)
Q Consensus 138 ~~~iFv~~~~c~G~Gc~~~c~~~~p~~F~~~~~~G~ar~~~q~~~~~~~vq~A~~~CP~~~I~~v~ 203 (262)
...+..|...|++.| .|+..+|..|..... |-. .........+..+++.||-.|+.++.
T Consensus 5 ~i~V~~d~~~C~hag---~Cv~~~p~VFd~~~~-~~v---~~d~a~~~~v~~~v~~CPSGAL~~~~ 63 (64)
T PF06902_consen 5 DITVTWDRERCIHAG---FCVRGAPEVFDQDDE-PWV---SPDEASAEEVREAVDRCPSGALSYWD 63 (64)
T ss_pred cEEEEECcCcccchh---hhhcCCCCcccCCCC-CcC---CcCccCHHHHHHHHHcCCccCcEEee
Confidence 346778899999999 899999999988554 333 44556678899999999999999865
No 74
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.38 E-value=0.0026 Score=53.61 Aligned_cols=70 Identities=19% Similarity=0.267 Sum_probs=53.4
Q ss_pred hhhhhCCCCCC--CHHHHHHHHHHHHHhhCCCCCCCCch-----HHHHHHHHHHHHHHhcChhHHHHHHhcCCCCCC
Q 024836 63 AYAILGVEPSC--SAAELKAAFRAKVKQYHPDVNRDGRD-----SDALIRRIIQAYEILTEYSRLEIIERECIDPFD 132 (262)
Q Consensus 63 ~Y~iLgl~~~a--s~~eIK~ayr~l~~~~HPD~~~~~~~-----a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~f~ 132 (262)
+..++|+.+.+ ..+.++..|+.+++.+|||+....+. +.+.+..++.||.+|.+|-+|..|=..-.+|..
T Consensus 3 ~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~lal~~g~~ 79 (174)
T COG1076 3 GFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLLALADGLD 79 (174)
T ss_pred cccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccccc
Confidence 34444554433 45668999999999999999876543 345788999999999999999999876655543
No 75
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=96.11 E-value=0.012 Score=47.15 Aligned_cols=60 Identities=20% Similarity=0.218 Sum_probs=42.5
Q ss_pred CCCCccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhH
Q 024836 56 TPPSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSR 119 (262)
Q Consensus 56 ~~~~~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~ 119 (262)
..|+......||+|++..+.++|.+.|.+|....+|++.+. .-.-.+|..|.+.|..+.+
T Consensus 53 ~~Mtl~EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGGS----fYLQSKV~rAKErl~~El~ 112 (127)
T PF03656_consen 53 KGMTLDEARQILNVKEELSREEIQKRYKHLFKANDPSKGGS----FYLQSKVFRAKERLEQELK 112 (127)
T ss_dssp ----HHHHHHHHT--G--SHHHHHHHHHHHHHHT-CCCTS-----HHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHcCCCCccCHHHHHHHHHHHHhccCCCcCCC----HHHHHHHHHHHHHHHHHHH
Confidence 35888899999999999999999999999999999998654 3444578889998876543
No 76
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=95.83 E-value=0.011 Score=57.19 Aligned_cols=41 Identities=22% Similarity=0.352 Sum_probs=30.1
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCCCCCc-------hHHHHHHHHHHHHH
Q 024836 72 SCSAAELKAAFRAKVKQYHPDVNRDGR-------DSDALIRRIIQAYE 112 (262)
Q Consensus 72 ~as~~eIK~ayr~l~~~~HPD~~~~~~-------~a~~~f~~i~~Ay~ 112 (262)
=.+.++||++||+..+..||||.++.+ -+++.|-.+.+|+.
T Consensus 399 LVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn 446 (453)
T KOG0431|consen 399 LVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWN 446 (453)
T ss_pred ccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHH
Confidence 368999999999999999999988753 23344444455544
No 77
>COG3592 Uncharacterized conserved protein [Function unknown]
Probab=93.38 E-value=0.059 Score=38.19 Aligned_cols=61 Identities=23% Similarity=0.554 Sum_probs=47.8
Q ss_pred cchhhhhhhccccccCCCCCCCCCCCCCceeeecCCCccccccCCCCchhHHHHHhhcCCccceEEeC
Q 024836 136 CEALDVFVNEVLCVGKGCPYSCVKTAPNAFSYSSSTGTARAISQGHGQDYRVQLAVGQCPRSCIHYVT 203 (262)
Q Consensus 136 ~~~~~iFv~~~~c~G~Gc~~~c~~~~p~~F~~~~~~G~ar~~~q~~~~~~~vq~A~~~CP~~~I~~v~ 203 (262)
++.-|+..+...|.-.| .|+.+.|+.|.. |+..=+-....+...++-.+++||-.|+.|+.
T Consensus 13 Gekidi~fn~~iC~Hs~---nCV~Gn~~vF~~----~rkPWI~Pd~~~ve~i~~vi~sCPSGAl~Y~~ 73 (74)
T COG3592 13 GEKIDIYFNTAICAHSG---NCVRGNPKVFNL----GRKPWIMPDAVDVEEIVKVIDTCPSGALKYRR 73 (74)
T ss_pred cceEEEEeccceeeccc---ceecCCHhhccc----CCCCccCCCCCCHHHHHHHHHhCCchhhheec
Confidence 35567888888898888 899999999977 23334445566778899999999999999864
No 78
>PF13446 RPT: A repeated domain in UCH-protein
Probab=89.39 E-value=0.79 Score=31.62 Aligned_cols=30 Identities=30% Similarity=0.510 Sum_probs=27.0
Q ss_pred CCccchhhhhCCCCCCCHHHHHHHHHHHHH
Q 024836 58 PSTSSAYAILGVEPSCSAAELKAAFRAKVK 87 (262)
Q Consensus 58 ~~~~~~Y~iLgl~~~as~~eIK~ayr~l~~ 87 (262)
|+..++|++|||+++.+.+.|-.+|+....
T Consensus 2 ~~~~~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~ 31 (62)
T PF13446_consen 2 MDVEEAYEILGIDEDTDDDFIISAFQSKVN 31 (62)
T ss_pred CCHHHHHHHhCcCCCCCHHHHHHHHHHHHH
Confidence 455679999999999999999999998887
No 79
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=83.39 E-value=2.2 Score=36.60 Aligned_cols=41 Identities=24% Similarity=0.240 Sum_probs=32.2
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChh
Q 024836 70 EPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYS 118 (262)
Q Consensus 70 ~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~ 118 (262)
+++|+.+||.+|+.+|..+|--| ++.-.+|..||+.|.=..
T Consensus 1 S~~ASfeEIq~Arn~ll~~y~gd--------~~~~~~IEaAYD~ILM~r 41 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQYAGD--------EKSREAIEAAYDAILMER 41 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCC--------HHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999322 345678999999875443
No 80
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=79.81 E-value=4.2 Score=31.81 Aligned_cols=46 Identities=17% Similarity=0.286 Sum_probs=33.0
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCCCCCCch----HHHHHHHHHHHHHHhcC
Q 024836 71 PSCSAAELKAAFRAKVKQYHPDVNRDGRD----SDALIRRIIQAYEILTE 116 (262)
Q Consensus 71 ~~as~~eIK~ayr~l~~~~HPD~~~~~~~----a~~~f~~i~~Ay~~L~d 116 (262)
+..+..++|.+.|.+-++.|||.....|. -++-++.|+.-.+.|..
T Consensus 4 r~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~ 53 (112)
T PF14687_consen 4 RNLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKK 53 (112)
T ss_pred hhhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhc
Confidence 34567889999999999999998776543 23445666666565553
No 81
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=78.98 E-value=2 Score=39.58 Aligned_cols=53 Identities=21% Similarity=0.261 Sum_probs=41.8
Q ss_pred CCHHHHHHHHHHHHHhhCCCCCCC----CchHHHHHHHHHHHHHHhcChhHHHHHHh
Q 024836 73 CSAAELKAAFRAKVKQYHPDVNRD----GRDSDALIRRIIQAYEILTEYSRLEIIER 125 (262)
Q Consensus 73 as~~eIK~ayr~l~~~~HPD~~~~----~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~ 125 (262)
++..+|..+|+..++..||++... ....++.++.|.+||++|++..+|...|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~ 60 (335)
T KOG0724|consen 4 ASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDS 60 (335)
T ss_pred ccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhh
Confidence 567889999999999999998742 12456789999999999998665545444
No 82
>PRK08348 NADH-plastoquinone oxidoreductase subunit; Provisional
Probab=65.26 E-value=5 Score=31.33 Aligned_cols=61 Identities=20% Similarity=0.348 Sum_probs=37.0
Q ss_pred hhhhhhccccccCCCCCCCCCCCCCc-eeeecCCCccccccCCCCchhHHHHHhhcCCccceEEeCcc
Q 024836 139 LDVFVNEVLCVGKGCPYSCVKTAPNA-FSYSSSTGTARAISQGHGQDYRVQLAVGQCPRSCIHYVTPS 205 (262)
Q Consensus 139 ~~iFv~~~~c~G~Gc~~~c~~~~p~~-F~~~~~~G~ar~~~q~~~~~~~vq~A~~~CP~~~I~~v~~~ 205 (262)
..+.++...|++|| .|+..+|.. +.+....+... . ..+.-..-...+..||.+||.+....
T Consensus 35 g~i~i~~~~Ci~C~---~C~~~CP~~ai~~~~~~~~~~-i--~~~~C~~Cg~Cv~~CP~~Ai~~~~~~ 96 (120)
T PRK08348 35 GKILYDVDKCVGCR---MCVTVCPAGVFVYLPEIRKVA-L--WTGRCVFCGQCVDVCPTGALQMSDDF 96 (120)
T ss_pred ceEEECcccCcCcc---cHHHHCCccceEccccccceE-e--cCCcCcChhhhHHhCCcCcEEeccce
Confidence 35668888999987 787777763 33332211111 1 11222234567899999999987743
No 83
>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]
Probab=62.67 E-value=6.6 Score=36.19 Aligned_cols=48 Identities=17% Similarity=0.398 Sum_probs=30.4
Q ss_pred CCCCCCCCCCCCceeeecCCCccccccCCCCchhHHHHHhhcCCccceEEeC
Q 024836 152 GCPYSCVKTAPNAFSYSSSTGTARAISQGHGQDYRVQLAVGQCPRSCIHYVT 203 (262)
Q Consensus 152 Gc~~~c~~~~p~~F~~~~~~G~ar~~~q~~~~~~~vq~A~~~CP~~~I~~v~ 203 (262)
|||.+|+...-+-|++-+-.+ .. ..+..- ---..-++.||+.||.|..
T Consensus 146 GCPn~C~r~~~~DigivGv~~-P~-~~~E~c--~gc~~cv~~C~~gAI~~~~ 193 (317)
T COG2221 146 GCPNDCTRPQAHDIGIVGVWK-PK-VDEELC--RGCGKCVKVCPTGAITWDG 193 (317)
T ss_pred cCCcccccccccceeEEEeec-Cc-cCHHHh--chhHhHHHhCCCCceeecc
Confidence 599999987777887754443 11 111000 0011668899999999987
No 84
>TIGR03048 PS_I_psaC photosystem I iron-sulfur protein PsaC. Members of this family are PsaC, an essential component of photosystem I (PS-I) reaction center in Cyanobacteria and chloroplasts. This small protein, about 80 amino acids in length, contains two copies of the ferredoxin-like 4Fe-4S binding site (pfam00037) and therefore eight conserved Cys residues. This protein is also called photosystem I subunit VII.
Probab=56.26 E-value=6.7 Score=28.18 Aligned_cols=59 Identities=14% Similarity=0.263 Sum_probs=33.2
Q ss_pred hhhhccccccCCCCCCCCCCCCC-ceeeecCCCc--ccc-ccCCCCchhHHHHHhhcCCccceEEe
Q 024836 141 VFVNEVLCVGKGCPYSCVKTAPN-AFSYSSSTGT--ARA-ISQGHGQDYRVQLAVGQCPRSCIHYV 202 (262)
Q Consensus 141 iFv~~~~c~G~Gc~~~c~~~~p~-~F~~~~~~G~--ar~-~~q~~~~~~~vq~A~~~CP~~~I~~v 202 (262)
++.....|+++| .|...+|. .+.+....+. ... .....+.-..-...++.||.++|.+.
T Consensus 3 ~~~~~~~Ci~C~---~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~ 65 (80)
T TIGR03048 3 SVKIYDTCIGCT---QCVRACPTDVLEMVPWDGCKAGQIASAPRTEDCVGCKRCESACPTDFLSVR 65 (80)
T ss_pred ceecCCcCcCcc---hHHHHCCccceeeecccccccccccCcCCCCcCcChhHHHHhcCcccCEEE
Confidence 455667788877 67777774 3555432221 111 11111222234578999999999863
No 85
>COG1142 HycB Fe-S-cluster-containing hydrogenase components 2 [Energy production and conversion]
Probab=51.88 E-value=6.3 Score=33.00 Aligned_cols=66 Identities=24% Similarity=0.391 Sum_probs=40.9
Q ss_pred chhhhhhhccccccCCCCCCCCCCCCCc-eeeecCCCccccccC----CCCchhHHHHHhhcCCccceEEeCcch
Q 024836 137 EALDVFVNEVLCVGKGCPYSCVKTAPNA-FSYSSSTGTARAISQ----GHGQDYRVQLAVGQCPRSCIHYVTPSQ 206 (262)
Q Consensus 137 ~~~~iFv~~~~c~G~Gc~~~c~~~~p~~-F~~~~~~G~ar~~~q----~~~~~~~vq~A~~~CP~~~I~~v~~~~ 206 (262)
+...+.|++..|+||| .|+-.+|.+ +.+....+.++...+ =.+.+.. ..=+..||.+|+.+++...
T Consensus 73 ~~~~v~V~~ekCiGC~---~C~~aCPfGai~~~~~~~~~~~~a~KCdlC~~~e~g-paCVe~CP~~AL~lv~~~~ 143 (165)
T COG1142 73 DDGAVQVDEEKCIGCK---LCVVACPFGAITMVSYPVAAKAVAVKCDLCAGREVG-PACVEACPTEALELVDEIV 143 (165)
T ss_pred cCCceEEchhhccCcc---hhhhcCCcceEEEEeecCcchhhhhhcccccCccCC-CceeeeCCHHHhhcccHHH
Confidence 3456789999999988 788888753 344444221121111 1122222 4568899999999988655
No 86
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.43 E-value=30 Score=27.62 Aligned_cols=60 Identities=17% Similarity=0.138 Sum_probs=44.1
Q ss_pred CCCCccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhH
Q 024836 56 TPPSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSR 119 (262)
Q Consensus 56 ~~~~~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~ 119 (262)
..++....-+||+|+...+.++|-+.|-.|-....+.+.+.- -.--+|..|-|.|..+-+
T Consensus 54 ~~iTlqEa~qILnV~~~ln~eei~k~yehLFevNdkskGGSF----YLQSKVfRAkErld~El~ 113 (132)
T KOG3442|consen 54 GKITLQEAQQILNVKEPLNREEIEKRYEHLFEVNDKSKGGSF----YLQSKVFRAKERLDEELK 113 (132)
T ss_pred ccccHHHHhhHhCCCCCCCHHHHHHHHHHHHhccCcccCcce----eehHHHHHHHHHHHHHHH
Confidence 347788899999999999999999999999998877665542 112245556666654433
No 87
>CHL00065 psaC photosystem I subunit VII
Probab=49.09 E-value=7.3 Score=28.05 Aligned_cols=58 Identities=14% Similarity=0.269 Sum_probs=30.8
Q ss_pred hhccccccCCCCCCCCCCCCC-ceeeecCCC--cccc-ccCCCCchhHHHHHhhcCCccceEEeC
Q 024836 143 VNEVLCVGKGCPYSCVKTAPN-AFSYSSSTG--TARA-ISQGHGQDYRVQLAVGQCPRSCIHYVT 203 (262)
Q Consensus 143 v~~~~c~G~Gc~~~c~~~~p~-~F~~~~~~G--~ar~-~~q~~~~~~~vq~A~~~CP~~~I~~v~ 203 (262)
.+...|+++| .|...+|. .+.+....+ .... .....+.-..-...+..||.+||.|..
T Consensus 6 ~~~~~Ci~Cg---~C~~~CP~~~i~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~CP~~Ai~~~~ 67 (81)
T CHL00065 6 KIYDTCIGCT---QCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRV 67 (81)
T ss_pred CccccCCChh---HHHHHCCccchhheeccccccccccccCCCCcCCChhhhhhhcCccccEEEE
Confidence 3455788877 67777773 444432211 0011 111111112235789999999998753
No 88
>PRK09626 oorD 2-oxoglutarate-acceptor oxidoreductase subunit OorD; Reviewed
Probab=47.68 E-value=11 Score=28.51 Aligned_cols=61 Identities=16% Similarity=0.275 Sum_probs=36.2
Q ss_pred hhhhhhccccccCCCCCCCCCCCCC-ceeeecCCCcc-----ccccCCCCchhHHHHHhhcCCccceEEeCc
Q 024836 139 LDVFVNEVLCVGKGCPYSCVKTAPN-AFSYSSSTGTA-----RAISQGHGQDYRVQLAVGQCPRSCIHYVTP 204 (262)
Q Consensus 139 ~~iFv~~~~c~G~Gc~~~c~~~~p~-~F~~~~~~G~a-----r~~~q~~~~~~~vq~A~~~CP~~~I~~v~~ 204 (262)
..+.++...|+||| .|+..+|. .|.+....... .... .+....-...+..||..||.+...
T Consensus 9 ~~v~id~~~Ci~C~---~Cv~aCP~~ai~~~~~~~~~~~~~~~~i~--~~~C~~C~~C~~~CP~~AI~~~~~ 75 (103)
T PRK09626 9 TPVWVDESRCKACD---ICVSVCPAGVLAMRIDPHAVLGKMIKVVH--PESCIGCRECELHCPDFAIYVADR 75 (103)
T ss_pred CCeEECcccccCCc---chhhhcChhhhccccccccccCceeeEeC--CccCCCcCcchhhCChhhEEEecc
Confidence 34566888999987 78888876 44443221110 0010 111122345789999999998764
No 89
>PLN00071 photosystem I subunit VII; Provisional
Probab=45.71 E-value=10 Score=27.22 Aligned_cols=58 Identities=17% Similarity=0.327 Sum_probs=32.0
Q ss_pred hhhccccccCCCCCCCCCCCCC-ceeeecCCC-ccccc--cCCCCchhHHHHHhhcCCccceEEe
Q 024836 142 FVNEVLCVGKGCPYSCVKTAPN-AFSYSSSTG-TARAI--SQGHGQDYRVQLAVGQCPRSCIHYV 202 (262)
Q Consensus 142 Fv~~~~c~G~Gc~~~c~~~~p~-~F~~~~~~G-~ar~~--~q~~~~~~~vq~A~~~CP~~~I~~v 202 (262)
+++...|+++| .|+..+|. .+.+....+ ..... ....+.-..-...+..||.+||.+.
T Consensus 5 ~~~~~~C~~C~---~C~~~CP~~~i~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~Ai~~~ 66 (81)
T PLN00071 5 VKIYDTCIGCT---QCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVR 66 (81)
T ss_pred eEcCCcCcChh---HHHHHCCccceeeecccccccccccCcCCCCcCcChhhHHhhcCCccceEe
Confidence 34556899877 67777774 455543222 11111 0111122234578999999999863
No 90
>TIGR02064 dsrA sulfite reductase, dissimilatory-type alpha subunit. This model describes the alpha subunit of sulfite reductase.
Probab=45.22 E-value=12 Score=35.86 Aligned_cols=18 Identities=22% Similarity=0.468 Sum_probs=14.5
Q ss_pred HHHHhhcCCccceEEeCc
Q 024836 187 VQLAVGQCPRSCIHYVTP 204 (262)
Q Consensus 187 vq~A~~~CP~~~I~~v~~ 204 (262)
+.+-+..||+.||.|...
T Consensus 247 ~~~~v~~Cp~~ai~~~~~ 264 (402)
T TIGR02064 247 ENEVVNRCPTKAISWDGS 264 (402)
T ss_pred chhHhhcCCccccccCCC
Confidence 445688999999999864
No 91
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=42.34 E-value=1e+02 Score=22.40 Aligned_cols=31 Identities=13% Similarity=0.264 Sum_probs=24.7
Q ss_pred chhhhhCCCCCCCHHHHHHHHHHHHHhhCCC
Q 024836 62 SAYAILGVEPSCSAAELKAAFRAKVKQYHPD 92 (262)
Q Consensus 62 ~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD 92 (262)
+--+++|+++.++..||+.|-++.+++..--
T Consensus 4 NIk~LfnfdPPAT~~EvrdAAlQfVRKlSGt 34 (88)
T COG5552 4 NIKELFNFDPPATPVEVRDAALQFVRKLSGT 34 (88)
T ss_pred chHHHhCCCCCCCcHHHHHHHHHHHHHhcCC
Confidence 3467889999999999999987777766433
No 92
>PF12797 Fer4_2: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=40.36 E-value=6.1 Score=21.82 Aligned_cols=18 Identities=22% Similarity=0.645 Sum_probs=13.4
Q ss_pred hhhhhccccccCCCCCCCCCC
Q 024836 140 DVFVNEVLCVGKGCPYSCVKT 160 (262)
Q Consensus 140 ~iFv~~~~c~G~Gc~~~c~~~ 160 (262)
.+++|...|+|++ .|+..
T Consensus 2 ~~~iD~~rCiGC~---~C~~A 19 (22)
T PF12797_consen 2 GMVIDLERCIGCG---ACEVA 19 (22)
T ss_pred ceEEccccccCch---hHHHh
Confidence 4678999999987 55443
No 93
>PRK10882 hydrogenase 2 protein HybA; Provisional
Probab=39.33 E-value=27 Score=32.50 Aligned_cols=29 Identities=21% Similarity=0.313 Sum_probs=20.0
Q ss_pred HhhcCCccceEEeCcchhhhHHHHHHhhcCC
Q 024836 190 AVGQCPRSCIHYVTPSQRIILEELLESILDA 220 (262)
Q Consensus 190 A~~~CP~~~I~~v~~~~~~~l~~~l~~~~~~ 220 (262)
-+..||..||.+-...++ ++++.+++...
T Consensus 193 Cv~aCP~gAi~fG~~~el--~~~a~~ri~~~ 221 (328)
T PRK10882 193 CVEVCPTGAVIFGTREEL--LAEAKRRLALK 221 (328)
T ss_pred hhhhccccceEeccHHHH--HHHHHHHHHhc
Confidence 678899999998775443 55555555443
No 94
>PF13187 Fer4_9: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 2VKR_C 1KQG_B 1KQF_B 3GYX_J.
Probab=38.47 E-value=4.7 Score=26.48 Aligned_cols=11 Identities=36% Similarity=0.764 Sum_probs=7.7
Q ss_pred HHhhcCCccce
Q 024836 189 LAVGQCPRSCI 199 (262)
Q Consensus 189 ~A~~~CP~~~I 199 (262)
.-+..||++||
T Consensus 45 ~C~~~CP~~AI 55 (55)
T PF13187_consen 45 ACVKACPTGAI 55 (55)
T ss_dssp HHHHHSTTT-E
T ss_pred HHHHHcchhhC
Confidence 36778898887
No 95
>PF14697 Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B ....
Probab=37.04 E-value=25 Score=23.97 Aligned_cols=18 Identities=39% Similarity=1.064 Sum_probs=9.5
Q ss_pred hhccccccCCCCCCCCCCCCC
Q 024836 143 VNEVLCVGKGCPYSCVKTAPN 163 (262)
Q Consensus 143 v~~~~c~G~Gc~~~c~~~~p~ 163 (262)
+|+..|+|+| .|....|.
T Consensus 3 Id~~~Ci~Cg---~C~~~Cp~ 20 (59)
T PF14697_consen 3 IDEDKCIGCG---KCVRACPD 20 (59)
T ss_dssp E-TTT----S---CCCHHCCC
T ss_pred ECcccccChh---hHHhHcCc
Confidence 6788899988 67777774
No 96
>PRK09625 porD pyruvate flavodoxin oxidoreductase subunit delta; Reviewed
Probab=35.98 E-value=21 Score=28.51 Aligned_cols=70 Identities=17% Similarity=0.223 Sum_probs=38.6
Q ss_pred hhhhhccccccCCCCCCCCCCCCCceeeecCCCccccccCCCCchhHHHHHhhcCCccceEEeCcchhhhHHHHHH
Q 024836 140 DVFVNEVLCVGKGCPYSCVKTAPNAFSYSSSTGTARAISQGHGQDYRVQLAVGQCPRSCIHYVTPSQRIILEELLE 215 (262)
Q Consensus 140 ~iFv~~~~c~G~Gc~~~c~~~~p~~F~~~~~~G~ar~~~q~~~~~~~vq~A~~~CP~~~I~~v~~~~~~~l~~~l~ 215 (262)
.+.++...|++|| .|...+|...-.....+. .... .+....-..-++.||.++|.+.....-.-.+++|.
T Consensus 53 ~p~~d~~~Ci~C~---~C~~~CP~~ai~~~~~~~-~~i~--~~~C~~Cg~Cv~vCP~~a~~l~~~~~~~~~~~~~~ 122 (133)
T PRK09625 53 KPVHNNEICINCF---NCWVYCPDAAILSRDKKL-KGVD--YSHCKGCGVCVEVCPTNPKSLLMFEEQIENETALT 122 (133)
T ss_pred eEEEehhHCcChh---hHHHhCCHhheEecCCce-EEeC--cCcCcChhHHHHHCCcCceEEEecCcccchHHHHh
Confidence 4557788999987 788888754322122111 1111 01112234678999999987655444333444443
No 97
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=35.74 E-value=51 Score=28.76 Aligned_cols=121 Identities=11% Similarity=0.068 Sum_probs=58.8
Q ss_pred CHHHHHHHHHHHHHhhCCCCCCCCc-hHHHHHHHHHHHHHHhcChhHHHHHHhcCCCCCCCcccchhhhhhhccccccCC
Q 024836 74 SAAELKAAFRAKVKQYHPDVNRDGR-DSDALIRRIIQAYEILTEYSRLEIIERECIDPFDYPECEALDVFVNEVLCVGKG 152 (262)
Q Consensus 74 s~~eIK~ayr~l~~~~HPD~~~~~~-~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~f~~~~~~~~~iFv~~~~c~G~G 152 (262)
...+.++....+.+.-||.....=. .-+=.++.+...|.+- . .+ |... .+-...+.....+.+|+..|++||
T Consensus 80 ~~~~~rk~~l~~ll~~h~~~C~~C~~~g~C~Lq~~a~~~g~~-~--~~--~~~~--~~~~~~d~s~~~i~~d~~kCi~Cg 152 (234)
T PRK07569 80 RLQEYRRMIVELLFAEGNHVCAVCVANGNCELQDLAIEVGMD-H--VR--FPYL--FPRRPVDISHPRFGIDHNRCVLCT 152 (234)
T ss_pred HHHHHHHHHHHHHHHhccccCcccCCCCCcHHHHHHHHhCCC-C--cc--cCcc--cCCcccccCCCcEEeehhhCcCcc
Confidence 3445667778888888998543211 0112355555555422 1 11 1100 000000112234567889999987
Q ss_pred CCCCCCCCCCC-----ceeeecCCCccccccCCC------CchhHHHHHhhcCCccceEEeCc
Q 024836 153 CPYSCVKTAPN-----AFSYSSSTGTARAISQGH------GQDYRVQLAVGQCPRSCIHYVTP 204 (262)
Q Consensus 153 c~~~c~~~~p~-----~F~~~~~~G~ar~~~q~~------~~~~~vq~A~~~CP~~~I~~v~~ 204 (262)
.|+..++. .+...+.....+...... ..-..-..-+..||+.||.+...
T Consensus 153 ---~Cv~aC~~i~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~C~~Cg~Cv~vCP~gAL~~~~~ 212 (234)
T PRK07569 153 ---RCVRVCDEIEGAHTWDVAGRGAKSRVITDLNQPWGTSETCTSCGKCVQACPTGAIFRKGS 212 (234)
T ss_pred ---HHHHHHHHhcCCceeeecccCCcceEeecCCccccccccccchHHHHHhCCCCcEEecCC
Confidence 66665552 222221111222211100 11122356788999999988764
No 98
>PF07709 SRR: Seven Residue Repeat; InterPro: IPR011714 This repeat is found in some Plasmodium and Theileria proteins.
Probab=35.56 E-value=24 Score=16.98 Aligned_cols=13 Identities=31% Similarity=0.542 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHhc
Q 024836 103 LIRRIIQAYEILT 115 (262)
Q Consensus 103 ~f~~i~~Ay~~L~ 115 (262)
.|..+..||+.|+
T Consensus 2 ~~~~V~~aY~~l~ 14 (14)
T PF07709_consen 2 KFEKVKNAYEQLS 14 (14)
T ss_pred cHHHHHHHHHhcC
Confidence 3677888888764
No 99
>PRK09623 vorD 2-ketoisovalerate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=33.89 E-value=21 Score=27.25 Aligned_cols=58 Identities=22% Similarity=0.327 Sum_probs=34.7
Q ss_pred hhhhhhccccccCCCCCCCCCCCCCc-eeeecCCCccccccCCCCchhHHHHHhhcCCccceEEeC
Q 024836 139 LDVFVNEVLCVGKGCPYSCVKTAPNA-FSYSSSTGTARAISQGHGQDYRVQLAVGQCPRSCIHYVT 203 (262)
Q Consensus 139 ~~iFv~~~~c~G~Gc~~~c~~~~p~~-F~~~~~~G~ar~~~q~~~~~~~vq~A~~~CP~~~I~~v~ 203 (262)
..+.++...|++|+ .|+..+|.. +.+.. .|... ... +.-..-...++.||.+||.+..
T Consensus 44 ~~p~i~~~~Ci~C~---~C~~~CP~~ai~~~~-~~~~~-id~--~~C~~Cg~Cv~~CP~~AI~~~~ 102 (105)
T PRK09623 44 FMPVVDESKCVKCY---ICWKFCPEPAIYIKE-DGYVA-IDY--DYCKGCGICANECPTKAITMVK 102 (105)
T ss_pred eeEEECcccCcccc---chhhhCCHhheEecC-CCcEE-eCc--hhCcCcchhhhhcCcCcEEecc
Confidence 34667888999987 788888764 33322 22111 110 1111233578999999998865
No 100
>PRK02651 photosystem I subunit VII; Provisional
Probab=33.14 E-value=32 Score=24.48 Aligned_cols=54 Identities=17% Similarity=0.291 Sum_probs=28.8
Q ss_pred ccccccCCCCCCCCCCCCC-ceeeecCC-Ccccccc--CCCCchhHHHHHhhcCCccceEE
Q 024836 145 EVLCVGKGCPYSCVKTAPN-AFSYSSST-GTARAIS--QGHGQDYRVQLAVGQCPRSCIHY 201 (262)
Q Consensus 145 ~~~c~G~Gc~~~c~~~~p~-~F~~~~~~-G~ar~~~--q~~~~~~~vq~A~~~CP~~~I~~ 201 (262)
...|+++| .|...+|. .+...... +...... .....-..-...++.||.++|.+
T Consensus 8 ~~~Ci~C~---~C~~~CP~~~i~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~ 65 (81)
T PRK02651 8 YDTCIGCT---QCVRACPLDVLEMVPWDGCKAGQIASSPRTEDCVGCKRCETACPTDFLSI 65 (81)
T ss_pred cccCCCcc---hHHHHCCccceecccccccccCcccccCCCCcCCChhhhhhhcCCCceEE
Confidence 45788877 67777774 34443211 1111110 01111222357899999999984
No 101
>COG1146 Ferredoxin [Energy production and conversion]
Probab=31.83 E-value=49 Score=22.81 Aligned_cols=57 Identities=21% Similarity=0.387 Sum_probs=31.7
Q ss_pred hhccccccCCCCCCCCCCCCCc-eeeecC-CCccccccCCCCchhHHHHHhhcCCccceEEeCc
Q 024836 143 VNEVLCVGKGCPYSCVKTAPNA-FSYSSS-TGTARAISQGHGQDYRVQLAVGQCPRSCIHYVTP 204 (262)
Q Consensus 143 v~~~~c~G~Gc~~~c~~~~p~~-F~~~~~-~G~ar~~~q~~~~~~~vq~A~~~CP~~~I~~v~~ 204 (262)
++...|.|+| .|....|.. |.+..+ ++..-.... +.-..=..=+..||++||.+...
T Consensus 5 Id~~~C~~c~---~C~~~CP~~~~~~~~~~~~~~~~~~~--e~C~~C~~C~~~CP~~aI~~~~~ 63 (68)
T COG1146 5 IDYDKCIGCG---ICVEVCPAGVFDLGEDEGGKPVVARP--EECIDCGLCELACPVGAIKVDIL 63 (68)
T ss_pred ECchhcCCCC---hheeccChhhEEeccccCcceeEecc--ccCccchhhhhhCCcceEEEecc
Confidence 5666788866 677777774 444332 222222211 11122334467899999987654
No 102
>TIGR00403 ndhI NADH-plastoquinone oxidoreductase subunit I protein.
Probab=29.67 E-value=41 Score=28.42 Aligned_cols=65 Identities=15% Similarity=0.274 Sum_probs=34.5
Q ss_pred hhhhhccccccCCCCCCCCCCCCCce-eeec--CCC--ccc--cccCCCCchhHHHHHhhcCCccceEEeCcchh
Q 024836 140 DVFVNEVLCVGKGCPYSCVKTAPNAF-SYSS--STG--TAR--AISQGHGQDYRVQLAVGQCPRSCIHYVTPSQR 207 (262)
Q Consensus 140 ~iFv~~~~c~G~Gc~~~c~~~~p~~F-~~~~--~~G--~ar--~~~q~~~~~~~vq~A~~~CP~~~I~~v~~~~~ 207 (262)
.+.++...|++|| .|+..+|..- .+.. ..+ ... ...-..+.-..-..-++.||.+||.+....++
T Consensus 56 ~i~~~~~kCi~Cg---~C~~aCP~~ai~~~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~aCP~~AI~~~~~~e~ 127 (183)
T TIGR00403 56 RIHFEFDKCIACE---VCVRVCPINLPVVDWEFNKAIKKKQLKNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYEL 127 (183)
T ss_pred eEEeCcccCcCcC---ChhhhCCCCcccccccccccccccccceeecCcccccCcCchhhhcCCCCeeccccccc
Confidence 4567788999987 6777777541 1100 000 000 00001111122335688999999998765543
No 103
>PF12434 Malate_DH: Malate dehydrogenase enzyme
Probab=29.62 E-value=59 Score=18.87 Aligned_cols=17 Identities=24% Similarity=0.475 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHhhCC
Q 024836 75 AAELKAAFRAKVKQYHP 91 (262)
Q Consensus 75 ~~eIK~ayr~l~~~~HP 91 (262)
.++.|.+-|+.++.||-
T Consensus 10 ~~~~r~~lR~AALeYHe 26 (28)
T PF12434_consen 10 KEDKRAQLRQAALEYHE 26 (28)
T ss_pred hHHHHHHHHHHHHHhcc
Confidence 47789999999999993
No 104
>PRK05113 electron transport complex protein RnfB; Provisional
Probab=28.93 E-value=33 Score=29.18 Aligned_cols=58 Identities=24% Similarity=0.492 Sum_probs=34.0
Q ss_pred hhhhhccccccCCCCCCCCCCCCCce-eeecCCCccccccCCCCchhHHHHHhhcCCccceEEeCc
Q 024836 140 DVFVNEVLCVGKGCPYSCVKTAPNAF-SYSSSTGTARAISQGHGQDYRVQLAVGQCPRSCIHYVTP 204 (262)
Q Consensus 140 ~iFv~~~~c~G~Gc~~~c~~~~p~~F-~~~~~~G~ar~~~q~~~~~~~vq~A~~~CP~~~I~~v~~ 204 (262)
-++++...|++|| .|+..+|..- ... ..+...... +.-..-..-+..||++||.++..
T Consensus 108 ~~~id~~~Ci~Cg---~Cv~aCp~~ai~~~-~~~~~~v~~---~~C~~Cg~Cv~vCP~~AI~~~~~ 166 (191)
T PRK05113 108 VAFIDEDNCIGCT---KCIQACPVDAIVGA-TKAMHTVIS---DLCTGCDLCVAPCPTDCIEMIPV 166 (191)
T ss_pred eeEEeCCcCCCCC---hhhhhCCHhhhecc-cCCceeecC---CcCCchHHHHHHcCcCceEEeec
Confidence 4678899999987 6777776321 221 111111111 11122346788999999998764
No 105
>PRK08222 hydrogenase 4 subunit H; Validated
Probab=28.46 E-value=17 Score=30.60 Aligned_cols=65 Identities=14% Similarity=0.224 Sum_probs=34.4
Q ss_pred hhhhhhccccccCCCCCCCCCCCCCc-eeeecCC-CccccccCCCCchhHHHHHhhcCCccceEEeCcch
Q 024836 139 LDVFVNEVLCVGKGCPYSCVKTAPNA-FSYSSST-GTARAISQGHGQDYRVQLAVGQCPRSCIHYVTPSQ 206 (262)
Q Consensus 139 ~~iFv~~~~c~G~Gc~~~c~~~~p~~-F~~~~~~-G~ar~~~q~~~~~~~vq~A~~~CP~~~I~~v~~~~ 206 (262)
..+.++...|++|| .|+..+|.. +.+..+. +..+......+.-..-..-++.||.+||.+....+
T Consensus 31 G~~~~d~~~Ci~Cg---~Cv~aCP~~Ai~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CPt~AI~~~~~~~ 97 (181)
T PRK08222 31 GKPDLMPSQCIACG---ACTCACPANALTIQTDDQQNSRTWQLYLGRCIYCGRCEEVCPTRAIQLTNNFE 97 (181)
T ss_pred CceEeChhhCcchh---HHHHhCCccceEcccccccCccceeeccCcCcCCCCcccccCcCeEEecccee
Confidence 34667888999987 676766653 2322211 11111111111111223567899999999876443
No 106
>TIGR02163 napH_ ferredoxin-type protein, NapH/MauN family. Most members of this family are the NapH protein, found next to NapG,in operons that encode the periplasmic nitrate reductase. Some species with this reductase lack NapC but accomplish electron transfer to NapAB in some other manner, likely to involve NapH, NapG, and/or some other protein. A few members of this protein are designated MauN and are found in methylamine utilization operons in species that appear to lack a periplasmic nitrate reductase.
Probab=28.32 E-value=48 Score=29.41 Aligned_cols=54 Identities=11% Similarity=0.257 Sum_probs=30.6
Q ss_pred hccccccCCCCCCCCCCCCCceeee--cCCCccccccCCCCchhHHHHHhhcCCccceEEe
Q 024836 144 NEVLCVGKGCPYSCVKTAPNAFSYS--SSTGTARAISQGHGQDYRVQLAVGQCPRSCIHYV 202 (262)
Q Consensus 144 ~~~~c~G~Gc~~~c~~~~p~~F~~~--~~~G~ar~~~q~~~~~~~vq~A~~~CP~~~I~~v 202 (262)
|+..|.+|+ .|...+|..-.+. ...+..... ..++-..-..-++.||.+||.+.
T Consensus 199 ~~~~C~~C~---~C~~vCP~~~vl~~~~~~~~~~~i--~~~~C~~Cg~Cv~~CP~~Ai~f~ 254 (255)
T TIGR02163 199 DREKCTNCM---DCFNVCPEPQVLRMPLKKGGSTLV--LSGDCTLCGRCIDVCHEDVLGFT 254 (255)
T ss_pred ccccCeEcC---CccCcCCCCceeeccccCCCceEe--ccccccchhHHHHhCCccccccc
Confidence 378899877 7888888642221 111111111 11233345567889999999874
No 107
>TIGR01971 NuoI NADH-quinone oxidoreductase, chain I. This model represents the I subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes "I" subunits from the closely related F420H2 dehydrogenase and formate hydrogenlyase complexes.
Probab=27.90 E-value=16 Score=28.32 Aligned_cols=60 Identities=20% Similarity=0.339 Sum_probs=33.3
Q ss_pred cccccCCCCCCCCCCCC-CceeeecC---CCccc--cccCCCCchhHHHHHhhcCCccceEEeCcchhh
Q 024836 146 VLCVGKGCPYSCVKTAP-NAFSYSSS---TGTAR--AISQGHGQDYRVQLAVGQCPRSCIHYVTPSQRI 208 (262)
Q Consensus 146 ~~c~G~Gc~~~c~~~~p-~~F~~~~~---~G~ar--~~~q~~~~~~~vq~A~~~CP~~~I~~v~~~~~~ 208 (262)
..|++|| .|...+| ..+.+... .+... ......+.-..-...+..||.++|.+...++.+
T Consensus 43 ~~Ci~C~---~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~Cv~~CP~~al~~~~~~~~~ 108 (122)
T TIGR01971 43 EKCIGCT---LCAAVCPADAIRVVPAEGEDGKRRLKFYQINFGRCIFCGLCEEACPTDAIVLTPEFELA 108 (122)
T ss_pred CcCcCcc---hhhhhcCHhHeeeeeeccCCCceecccceECcccCCCCCchhhhCCCccccccceeeec
Confidence 7899987 7888888 44544321 11100 000001111123456889999999887777654
No 108
>PRK06273 ferredoxin; Provisional
Probab=27.33 E-value=29 Score=28.93 Aligned_cols=19 Identities=42% Similarity=0.861 Sum_probs=13.2
Q ss_pred hhhccccccCCCCCCCCCCCCC
Q 024836 142 FVNEVLCVGKGCPYSCVKTAPN 163 (262)
Q Consensus 142 Fv~~~~c~G~Gc~~~c~~~~p~ 163 (262)
.+++..|+||| .|...+|.
T Consensus 45 ~id~~~CigCg---~C~~aCP~ 63 (165)
T PRK06273 45 KVFEELCIGCG---GCANVCPT 63 (165)
T ss_pred eECchhCcChh---HHHHhcCc
Confidence 46777899987 55555554
No 109
>PRK12387 formate hydrogenlyase complex iron-sulfur subunit; Provisional
Probab=27.01 E-value=29 Score=29.02 Aligned_cols=95 Identities=17% Similarity=0.280 Sum_probs=48.9
Q ss_pred hhhhhccccccCCCCCCCCCCCCCc-eeeecCCC-ccccccCCCCchhHHHHHhhcCCccceEEeCcchhhhHH--HHHH
Q 024836 140 DVFVNEVLCVGKGCPYSCVKTAPNA-FSYSSSTG-TARAISQGHGQDYRVQLAVGQCPRSCIHYVTPSQRIILE--ELLE 215 (262)
Q Consensus 140 ~iFv~~~~c~G~Gc~~~c~~~~p~~-F~~~~~~G-~ar~~~q~~~~~~~vq~A~~~CP~~~I~~v~~~~~~~l~--~~l~ 215 (262)
.+.++...|++|| .|+..+|.. +.+....+ .........+.-..-..-++.||.+||.+....+++.+. .++.
T Consensus 32 ~p~~d~~~C~~C~---~Cv~~CP~~ai~~~~~~~~~~~~~~i~~~~C~~Cg~C~~vCP~~AI~~~~~~~~~~~~~~~l~~ 108 (180)
T PRK12387 32 KPEYNPQQCIGCA---ACVNACPSNALTVETDLATGELAWEFNLGRCIFCGRCEEVCPTAAIKLSQEFELAVWKKEDLLQ 108 (180)
T ss_pred ceEEChhhCcChh---HHHHhcCccCeEeeccccCCcccceeccccCcCccchhhhcCcCceEccCccchhhccHHHhhh
Confidence 4567888999987 677777753 34432211 111101111111122356789999999987665544432 2222
Q ss_pred hhc--C-------CCcchhHHHHHHHHHHHh
Q 024836 216 SIL--D-------APYDTSAEAELLYSLIVK 237 (262)
Q Consensus 216 ~~~--~-------~~~~~~~e~~~~~~l~~~ 237 (262)
... . .|+...++.+.+..++..
T Consensus 109 ~~~~~~~~C~~CG~~f~~~~~i~~~~~~l~~ 139 (180)
T PRK12387 109 QSEFALCNCRVCGRPFAVQKEIDYAIALLKH 139 (180)
T ss_pred hceeCcccchhhCCccccHHHHHHHHHHHhh
Confidence 111 1 244444456666666654
No 110
>TIGR02936 fdxN_nitrog ferredoxin III, nif-specific. Members of this family are homodimeric ferredoxins from nitrogen fixation regions of many nitrogen-fixing bacteria. As characterized in Rhodobacter capsulatus, these proteins are homodimeric, with two 4Fe-4S clusters bound per monomer. Although nif-specific, this protein family is not usiveral, as other nitrogenase systems may substitute flavodoxins, or different types of ferredoxin.
Probab=26.25 E-value=25 Score=25.60 Aligned_cols=22 Identities=23% Similarity=0.560 Sum_probs=16.6
Q ss_pred hhhhhhccccccCCCCCCCCCCCCC
Q 024836 139 LDVFVNEVLCVGKGCPYSCVKTAPN 163 (262)
Q Consensus 139 ~~iFv~~~~c~G~Gc~~~c~~~~p~ 163 (262)
+.+.++...|+|+| .|+..+|.
T Consensus 14 ~~~~i~~~~Ci~C~---~Cv~~CP~ 35 (91)
T TIGR02936 14 FVTSIDQEKCIGCG---RCYKVCGR 35 (91)
T ss_pred eeEEECHhHCCCcc---hHHHHcCh
Confidence 34678889999987 67777764
No 111
>PRK05888 NADH dehydrogenase subunit I; Provisional
Probab=25.80 E-value=26 Score=28.79 Aligned_cols=58 Identities=16% Similarity=0.308 Sum_probs=30.3
Q ss_pred ccccCCCCCCCCCCCCCc-eeeecC---CCcccc--ccCCCCchhHHHHHhhcCCccceEEeCcchh
Q 024836 147 LCVGKGCPYSCVKTAPNA-FSYSSS---TGTARA--ISQGHGQDYRVQLAVGQCPRSCIHYVTPSQR 207 (262)
Q Consensus 147 ~c~G~Gc~~~c~~~~p~~-F~~~~~---~G~ar~--~~q~~~~~~~vq~A~~~CP~~~I~~v~~~~~ 207 (262)
.|++|| .|+..+|.. +.+... .|.... .....+.-..-...+..||.+||........
T Consensus 59 ~Ci~C~---~C~~~CP~~ai~~~~~~~~~g~~~~~~~~i~~~~C~~Cg~Cv~~CP~~Ai~~~~~~~~ 122 (164)
T PRK05888 59 RCIACK---LCAAICPADAITIEAAEREDGRRRTTRYDINFGRCIFCGFCEEACPTDAIVETPDFEL 122 (164)
T ss_pred cCCccc---ChHHHcCccccccccccCCCCcccceeeecCCCcCcccCcchhhcCcCcceecCccee
Confidence 899987 677777753 222111 111100 0011111112335688899999998766543
No 112
>cd01388 SOX-TCF_HMG-box SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif.
Probab=25.71 E-value=1.3e+02 Score=20.78 Aligned_cols=42 Identities=19% Similarity=0.182 Sum_probs=30.7
Q ss_pred HHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHh
Q 024836 79 KAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIER 125 (262)
Q Consensus 79 K~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~ 125 (262)
.+..|...+.-||+.. ..+..+.|.+.+..|++.++...++.
T Consensus 13 ~~~~r~~~~~~~p~~~-----~~eisk~l~~~Wk~ls~~eK~~y~~~ 54 (72)
T cd01388 13 SKRHRRKVLQEYPLKE-----NRAISKILGDRWKALSNEEKQPYYEE 54 (72)
T ss_pred HHHHHHHHHHHCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4556777778899852 24677889999999998887665543
No 113
>TIGR02060 aprB adenosine phosphosulphate reductase, beta subunit. During dissimilatory sulfate reduction and sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the beta subunit of APS reductase, sharing common evolutionary origin with other iron-sulfur cluster-binding proteins.
Probab=24.37 E-value=62 Score=25.93 Aligned_cols=66 Identities=21% Similarity=0.296 Sum_probs=38.6
Q ss_pred hhhhccccccCCC--CCCCCCCCCCc-eeeecCCCccccccCCCCchhHHHHHhhcCCccceEEeCcchhh
Q 024836 141 VFVNEVLCVGKGC--PYSCVKTAPNA-FSYSSSTGTARAISQGHGQDYRVQLAVGQCPRSCIHYVTPSQRI 208 (262)
Q Consensus 141 iFv~~~~c~G~Gc--~~~c~~~~p~~-F~~~~~~G~ar~~~q~~~~~~~vq~A~~~CP~~~I~~v~~~~~~ 208 (262)
+++++..|+|||- -..|+..+|.. +.++.....+... ..+.-..-..-+..||.+||.+....+..
T Consensus 3 ~~v~~~~C~gC~~~~~~~Cv~~CP~~ai~~~~~~~~~~~i--d~~~C~~Cg~Cv~~CP~~AI~~~~~~~~~ 71 (132)
T TIGR02060 3 TFVYPTKCDGCKAGEKTACVYICPNDLMHLDTEIMKAYNI--EPDMCWECYSCVKACPQGAIDVRGYADFA 71 (132)
T ss_pred CEEccccccCccCCchhcCHhhcCccceEecCCCceeeec--CchhCccHHHHHHhCCcCceEEECccccc
Confidence 4678889998540 12577778763 3443321121111 11222335578999999999997765543
No 114
>cd00084 HMG-box High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I proteins bind DNA in a sequence specific fashion and contain a single HMG box. One group (SOX-TCF) includes transcription factors, TCF-1, -3, -4; and also SRY and LEF-1, which bind four-way DNA junctions and duplex DNA targets. The second group (MATA) includes fungal mating type gene products MC, MATA1 and Ste11. Class II and III proteins (HMGB-UBF) bind DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III member
Probab=23.97 E-value=2.1e+02 Score=18.59 Aligned_cols=42 Identities=19% Similarity=0.302 Sum_probs=30.7
Q ss_pred HHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHh
Q 024836 79 KAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIER 125 (262)
Q Consensus 79 K~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~ 125 (262)
.+.++.-.+.-|||.. ..+..+.|.+.|..|++.++...++.
T Consensus 12 ~~~~~~~~~~~~~~~~-----~~~i~~~~~~~W~~l~~~~k~~y~~~ 53 (66)
T cd00084 12 SQEHRAEVKAENPGLS-----VGEISKILGEMWKSLSEEEKKKYEEK 53 (66)
T ss_pred HHHHHHHHHHHCcCCC-----HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 5666777788888842 34677889999999998776555443
No 115
>PF12837 Fer4_6: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=23.69 E-value=10 Score=21.15 Aligned_cols=19 Identities=32% Similarity=0.912 Sum_probs=13.6
Q ss_pred hhhccccccCCCCCCCCCCCCC
Q 024836 142 FVNEVLCVGKGCPYSCVKTAPN 163 (262)
Q Consensus 142 Fv~~~~c~G~Gc~~~c~~~~p~ 163 (262)
.+|+..|.|+| .|+..+|.
T Consensus 3 ~id~~~C~~Cg---~C~~~Cp~ 21 (24)
T PF12837_consen 3 VIDPDKCIGCG---DCVRVCPE 21 (24)
T ss_pred EEChhhCcChh---HHHHhcch
Confidence 46788899987 66666653
No 116
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=23.67 E-value=36 Score=30.50 Aligned_cols=61 Identities=21% Similarity=0.400 Sum_probs=32.2
Q ss_pred hhhhhhhccccccCCCCCCCCCCCCCce---eeecCCCccccccCCCCchhHHHHHhhcCCccceEEeC
Q 024836 138 ALDVFVNEVLCVGKGCPYSCVKTAPNAF---SYSSSTGTARAISQGHGQDYRVQLAVGQCPRSCIHYVT 203 (262)
Q Consensus 138 ~~~iFv~~~~c~G~Gc~~~c~~~~p~~F---~~~~~~G~ar~~~q~~~~~~~vq~A~~~CP~~~I~~v~ 203 (262)
...+.++...|+||| .|+..+|..= ..... +..+. ......-..-..-+..||.+||.+..
T Consensus 40 ~~~~~~~~~~C~~C~---~C~~~Cp~~a~~~~~~~~-~~~~~-~~~~~~C~~Cg~C~~~CP~~Ai~~~g 103 (295)
T TIGR02494 40 SPELLFKENRCLGCG---KCVEVCPAGTARLSELAD-GRNRI-IIRREKCTHCGKCTEACPSGALSIVG 103 (295)
T ss_pred CceEEEccccCCCCc---hhhhhCcccccccccccC-CCcce-eechhhcCchhHhhccCcHhHHhhhc
Confidence 346778999999987 6777666431 11011 11110 00001111223567889999998753
No 117
>TIGR02951 DMSO_dmsB DMSO reductase, iron-sulfur subunit. This family consists of the iron-sulfur subunit, or chain B, of an enzyme called the anaerobic dimethyl sulfoxide reductase. Chains A and B are catalytic, while chain C is a membrane anchor.
Probab=23.43 E-value=73 Score=25.93 Aligned_cols=58 Identities=28% Similarity=0.489 Sum_probs=32.3
Q ss_pred hhhhccccccCCCCCCCCCCCCC-ceeeecCCCccccccCCCCchhHHH-----HHhhcCCccceEEeCc
Q 024836 141 VFVNEVLCVGKGCPYSCVKTAPN-AFSYSSSTGTARAISQGHGQDYRVQ-----LAVGQCPRSCIHYVTP 204 (262)
Q Consensus 141 iFv~~~~c~G~Gc~~~c~~~~p~-~F~~~~~~G~ar~~~q~~~~~~~vq-----~A~~~CP~~~I~~v~~ 204 (262)
+.++...|++++ .|...+|. .+.+....+.+..= ..-+ .++. .-+..||.+||.|.+.
T Consensus 90 ~~i~~~~C~~C~---~C~~aCP~~ai~~~~~~~~~~kC-~~C~--~r~~~g~~p~Cv~~Cp~~Ai~~~~~ 153 (161)
T TIGR02951 90 VLVDQDKCIGCR---YCVWACPYGAPQYDPQQGVMGKC-DGCY--DRVEKGLRPACVDACPMRALDFGPI 153 (161)
T ss_pred EEECHHhCCCch---HHHhhCCCCCcEEcCCCCccccC-CCCH--HHHHCCCCCcchhhccccceEEecH
Confidence 445667788876 56666665 34444333322100 0111 1121 5788899999999873
No 118
>PHA01516 hypothetical protein
Probab=23.27 E-value=21 Score=26.22 Aligned_cols=8 Identities=38% Similarity=1.253 Sum_probs=5.0
Q ss_pred CCCCcccC
Q 024836 255 SSQHVDWF 262 (262)
Q Consensus 255 ~~~~~~~~ 262 (262)
.+.|||||
T Consensus 73 tdrwvdwy 80 (98)
T PHA01516 73 TDRWVDWY 80 (98)
T ss_pred hhhhhhhh
Confidence 35577775
No 119
>TIGR01582 FDH-beta formate dehydrogenase, beta subunit, Fe-S containing. In addition to the gamma proteobacteria, a sequence from Aquifex aolicus falls within the scope of this model. This appears to be the case for the alpha, gamma and epsilon (accessory protein TIGR01562) chains as well.
Probab=23.23 E-value=47 Score=30.17 Aligned_cols=62 Identities=23% Similarity=0.392 Sum_probs=35.9
Q ss_pred hhhhhccccccCCCCCCCCCCCCCc-eeeecCCCccc----cccC-CCCchhHHHHHhhcCCccceEEeCcchh
Q 024836 140 DVFVNEVLCVGKGCPYSCVKTAPNA-FSYSSSTGTAR----AISQ-GHGQDYRVQLAVGQCPRSCIHYVTPSQR 207 (262)
Q Consensus 140 ~iFv~~~~c~G~Gc~~~c~~~~p~~-F~~~~~~G~ar----~~~q-~~~~~~~vq~A~~~CP~~~I~~v~~~~~ 207 (262)
.+.++...|+||+ .|+..+|.. ..++...+.+. .... ..|. .-.=+..||.+||.+....++
T Consensus 118 ~V~id~dkCigC~---~Cv~aCP~~a~~~~~~~~~~~KC~~C~dr~~~G~---~PaCv~aCP~gAi~fg~~~~~ 185 (283)
T TIGR01582 118 IVDFDHSKCIGCG---YCIVGCPFNIPRYDKVDNRPYKCTLCIDRVSVGQ---EPACVKTCPTNAISFGFKEDM 185 (283)
T ss_pred cEEEeHHHCCcch---HHHhhCCCCCcEEcCCCCChhhhcccccccccCC---CChHhCcccHhhEEECCHHHH
Confidence 3568888999977 677777653 34543332211 0000 0000 113478999999999987655
No 120
>COG2879 Uncharacterized small protein [Function unknown]
Probab=22.88 E-value=1.5e+02 Score=20.80 Aligned_cols=27 Identities=15% Similarity=0.305 Sum_probs=17.9
Q ss_pred HHHHHHHhhCCCCCCCCchHHHHHHHHHH
Q 024836 81 AFRAKVKQYHPDVNRDGRDSDALIRRIIQ 109 (262)
Q Consensus 81 ayr~l~~~~HPD~~~~~~~a~~~f~~i~~ 109 (262)
.|-+-+++.|||+.+-. -++.|++-.+
T Consensus 27 nYVehmr~~hPd~p~mT--~~EFfrec~d 53 (65)
T COG2879 27 NYVEHMRKKHPDKPPMT--YEEFFRECQD 53 (65)
T ss_pred HHHHHHHHhCcCCCccc--HHHHHHHHHH
Confidence 57777899999997643 3455554443
No 121
>PF08447 PAS_3: PAS fold; InterPro: IPR013655 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs []. The PAS fold appears in archaea, eubacteria and eukarya. The PAS domain contains a sensory box, or S-box domain that occupies the central portion of the PAS domain but is more widely distributed. It is often tandemly repeated. Known prosthetic groups bound in the S-box domain include haem in the oxygen sensor FixL [], FAD in the redox potential sensor NifL [], and a 4-hydroxycinnamyl chromophore in photoactive yellow protein []. Proteins containing the domain often contain other regulatory domains such as response regulator or sensor histidine kinase domains. Other S-box proteins include phytochromes and the aryl hydrocarbon receptor nuclear translocator. This domain has been found in the gene product of the madA gene of the filamentous zygomycete fungus Phycomyces blakesleeanus. It has been shown that MadA encodes a blue-light photoreceptor for phototropism and other light responses. The gene is involved in the phototropic responses associated with sporangiophore growth; they exhibit phototropism by bending toward near-UV and blue wavelengths and away from far-UV wavelengths in a manner that is physiologically similar to plant phototropic responses [].; GO: 0005515 protein binding; PDB: 3NJA_D 3H9W_A 3GDI_B 3ICY_A 3EEH_A 3MR0_B.
Probab=22.53 E-value=36 Score=23.86 Aligned_cols=29 Identities=34% Similarity=0.677 Sum_probs=20.6
Q ss_pred cchhhhhCCCCCCCHHHH-HHHHHHHHHhhCCCC
Q 024836 61 SSAYAILGVEPSCSAAEL-KAAFRAKVKQYHPDV 93 (262)
Q Consensus 61 ~~~Y~iLgl~~~as~~eI-K~ayr~l~~~~HPD~ 93 (262)
.+++++||+++ +++ +.....+....|||=
T Consensus 6 ~~~~~i~G~~~----~~~~~~~~~~~~~~ihpdD 35 (91)
T PF08447_consen 6 DNFYEIFGYSP----EEIGKPDFEEWLERIHPDD 35 (91)
T ss_dssp THHHHHHTS-H----HHHTCBEHHHHHHHB-TTT
T ss_pred HHHHHHhCCCH----HHhccCCHHHHHhhcCHHH
Confidence 45899999854 666 666777888999984
No 122
>PF07739 TipAS: TipAS antibiotic-recognition domain; InterPro: IPR012925 TipAL is a bacterial transcriptional regulator of the MerR family. The tipA gene can be expressed as a long form, TipAL, and a short form, TipAS, which constitutes the C-terminal part of TipAL. TipAS forms the antibiotic-recognition domain []. This domain, which has an alpha-helical globin-like fold, is also found at the C terminus of other MerR family transcription factors, including Mta, a central regulator of multidrug resistance in Bacillus subtilis [], and SkgA from Caulobacter crescentus []. ; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 1NY9_A 3HH0_A 3QAO_A.
Probab=22.09 E-value=2.7e+02 Score=20.76 Aligned_cols=48 Identities=21% Similarity=0.422 Sum_probs=33.7
Q ss_pred CCCCCC-CHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHH
Q 024836 68 GVEPSC-SAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIE 124 (262)
Q Consensus 68 gl~~~a-s~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd 124 (262)
|++++. ...+|-+.++.++..+++. ..+.+..|.+.| +.||.-+..||
T Consensus 51 g~~p~s~evq~l~~~~~~~~~~~~~~-------~~~~~~~l~~~y--~~~~~~~~~~~ 99 (118)
T PF07739_consen 51 GVDPDSPEVQELAERWMELINQFTGG-------DPELLRGLAQMY--VEDPRFAAMYD 99 (118)
T ss_dssp T--TT-HHHHHHHHHHHHHHHHSS----------HHHHHHHHHHT--TSTHHHHHHHG
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHhCC-------CHHHHHHHHHHH--HcCHHHHhhcc
Confidence 677765 4566888888888888771 246788888888 78888888888
No 123
>PRK09898 hypothetical protein; Provisional
Probab=21.70 E-value=1e+02 Score=26.42 Aligned_cols=56 Identities=13% Similarity=0.345 Sum_probs=31.6
Q ss_pred hhhhccccccCCCCCCCCCCCCCce-eeecCCCccccccCCCCchhHHHHHhhcCCccceEEeCcch
Q 024836 141 VFVNEVLCVGKGCPYSCVKTAPNAF-SYSSSTGTARAISQGHGQDYRVQLAVGQCPRSCIHYVTPSQ 206 (262)
Q Consensus 141 iFv~~~~c~G~Gc~~~c~~~~p~~F-~~~~~~G~ar~~~q~~~~~~~vq~A~~~CP~~~I~~v~~~~ 206 (262)
+-++...|+||+ .|...+|..- .++...+. .+.-..-..-++.||.+||.+++..+
T Consensus 149 v~vd~~~CigC~---~C~~aCP~~ai~~~~~~~~-------~~kC~~Cg~Cv~~CP~~Ai~~~~~~~ 205 (208)
T PRK09898 149 ITVDHKRCIGCS---ACTTACPWMMATVNTESKK-------SSKCVLCGECANACPTGALKIIEWKD 205 (208)
T ss_pred EEeccccCCCcC---cccccCCCCCCEecCCCCc-------CCcCcChHHHHHhCCcccEEEecHHH
Confidence 446777788866 5666666432 22221110 01111234678899999999987544
No 124
>cd01390 HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III members include nucleolar and mitochondrial transcription factors, UBF and mtTF1, which bind four-way DNA junctions.
Probab=21.05 E-value=2.6e+02 Score=18.39 Aligned_cols=41 Identities=20% Similarity=0.308 Sum_probs=28.9
Q ss_pred HHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHh
Q 024836 80 AAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIER 125 (262)
Q Consensus 80 ~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~ 125 (262)
+..|...+.-||+.. ..+..+.|.+.|..|++.++....+.
T Consensus 13 ~~~r~~~~~~~p~~~-----~~~i~~~~~~~W~~ls~~eK~~y~~~ 53 (66)
T cd01390 13 QEQRPKLKKENPDAS-----VTEVTKILGEKWKELSEEEKKKYEEK 53 (66)
T ss_pred HHHHHHHHHHCcCCC-----HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 345566667788842 35778899999999998776654443
No 125
>PRK13984 putative oxidoreductase; Provisional
Probab=20.62 E-value=56 Score=32.57 Aligned_cols=59 Identities=19% Similarity=0.326 Sum_probs=32.0
Q ss_pred hhhccccccCCCCCCCCCCCCCc-eeeecC------CCcccc-ccCCCCchhHHHHHhhcCCccceEEeC
Q 024836 142 FVNEVLCVGKGCPYSCVKTAPNA-FSYSSS------TGTARA-ISQGHGQDYRVQLAVGQCPRSCIHYVT 203 (262)
Q Consensus 142 Fv~~~~c~G~Gc~~~c~~~~p~~-F~~~~~------~G~ar~-~~q~~~~~~~vq~A~~~CP~~~I~~v~ 203 (262)
.+|...|+||| .|+..+|.. +.+... .|.... ..-..+....-...++.||.+||.+..
T Consensus 41 ~~d~~~Ci~C~---~C~~~Cp~~ai~~~~~~~~~~~~g~~~~~~~i~~~~c~~c~~c~~~Cp~~Ai~~~~ 107 (604)
T PRK13984 41 INDWEKCIGCG---TCSKICPTDAITMVEVPDLPQEYGKKPQRPVIDYGRCSFCALCVDICTTGSLKMTR 107 (604)
T ss_pred ccChhhCcCcc---chhhhCCccceEeeccccccccccccccccccCcccCcCcchHHhhCCcCcEEecc
Confidence 35888899988 777777743 222111 111100 000011112234688999999999855
Done!