Query 024836
Match_columns 262
No_of_seqs 392 out of 2361
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 15:14:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024836.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024836hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dn9_A DNAJ homolog subfamily 99.9 9.4E-22 3.2E-26 143.8 9.9 74 57-130 3-76 (79)
2 2ej7_A HCG3 gene; HCG3 protein 99.8 3.2E-21 1.1E-25 141.9 9.8 74 58-131 6-80 (82)
3 2ctp_A DNAJ homolog subfamily 99.8 4E-21 1.4E-25 140.1 9.6 73 57-130 3-75 (78)
4 1hdj_A Human HSP40, HDJ-1; mol 99.8 3E-21 1E-25 140.5 8.8 71 61-132 3-73 (77)
5 2yua_A Williams-beuren syndrom 99.8 6.5E-21 2.2E-25 145.3 10.5 72 56-127 12-83 (99)
6 2cug_A Mkiaa0962 protein; DNAJ 99.8 1.9E-20 6.5E-25 139.7 10.7 71 59-130 15-85 (88)
7 2och_A Hypothetical protein DN 99.8 1.1E-20 3.7E-25 136.2 8.8 68 58-128 5-72 (73)
8 2ctq_A DNAJ homolog subfamily 99.8 6.3E-21 2.1E-25 148.6 7.9 77 58-134 17-93 (112)
9 2ctr_A DNAJ homolog subfamily 99.8 1.2E-20 4.1E-25 140.8 8.9 72 58-130 4-75 (88)
10 2ctw_A DNAJ homolog subfamily 99.8 2.1E-20 7.1E-25 145.0 10.3 73 57-129 13-85 (109)
11 2dmx_A DNAJ homolog subfamily 99.8 1.5E-20 5E-25 141.4 8.9 75 58-132 6-81 (92)
12 1wjz_A 1700030A21RIK protein; 99.8 2.3E-20 8E-25 140.6 9.1 72 57-128 12-89 (94)
13 1bq0_A DNAJ, HSP40; chaperone, 99.8 6.6E-21 2.3E-25 146.3 5.1 72 61-132 3-74 (103)
14 2o37_A Protein SIS1; HSP40, J- 99.8 5.8E-20 2E-24 138.2 8.8 68 58-128 5-72 (92)
15 2lgw_A DNAJ homolog subfamily 99.8 3.4E-20 1.2E-24 141.4 6.8 71 61-131 2-73 (99)
16 2qsa_A DNAJ homolog DNJ-2; J-d 99.8 1.6E-19 5.6E-24 139.8 5.5 73 58-130 12-88 (109)
17 3apq_A DNAJ homolog subfamily 99.8 6.8E-19 2.3E-23 149.8 8.6 72 61-132 2-73 (210)
18 2l6l_A DNAJ homolog subfamily 99.7 2.1E-18 7.2E-23 141.5 8.7 71 57-127 6-82 (155)
19 2ys8_A RAB-related GTP-binding 99.7 1.2E-18 4.2E-23 130.5 5.8 61 60-121 26-86 (90)
20 1gh6_A Large T antigen; tumor 99.7 3.7E-19 1.3E-23 138.9 0.6 64 60-127 7-72 (114)
21 1faf_A Large T antigen; J doma 99.7 3.8E-18 1.3E-22 124.8 5.4 65 60-129 10-76 (79)
22 1iur_A KIAA0730 protein; DNAJ 99.7 3.8E-18 1.3E-22 127.3 4.4 66 55-120 10-76 (88)
23 3bvo_A CO-chaperone protein HS 99.7 2.6E-17 8.7E-22 141.2 8.7 83 39-126 26-115 (207)
24 3hho_A CO-chaperone protein HS 99.7 1.8E-17 6.2E-22 138.6 7.2 67 60-126 3-76 (174)
25 3lz8_A Putative chaperone DNAJ 99.7 1.4E-18 4.9E-23 158.7 0.0 71 56-127 23-93 (329)
26 2pf4_E Small T antigen; PP2A, 99.7 5.2E-18 1.8E-22 141.3 1.6 65 60-128 10-76 (174)
27 1fpo_A HSC20, chaperone protei 99.7 4.2E-17 1.4E-21 135.9 6.8 66 62-127 2-74 (171)
28 2guz_A Mitochondrial import in 99.7 3.6E-17 1.2E-21 117.1 4.3 61 56-120 9-70 (71)
29 1n4c_A Auxilin; four helix bun 99.6 3.7E-17 1.3E-21 137.0 0.6 63 61-123 117-182 (182)
30 2qwo_B Putative tyrosine-prote 99.6 7E-17 2.4E-21 121.1 1.7 56 61-116 33-91 (92)
31 3uo3_A J-type CO-chaperone JAC 99.6 3.8E-16 1.3E-20 131.2 4.3 66 59-127 9-81 (181)
32 3apo_A DNAJ homolog subfamily 99.6 1.5E-16 5.1E-21 159.4 2.0 74 57-130 17-90 (780)
33 3ag7_A Putative uncharacterize 99.6 2.9E-16 9.9E-21 121.0 1.3 57 61-118 41-104 (106)
34 2guz_B Mitochondrial import in 99.1 7.6E-11 2.6E-15 82.6 5.2 56 58-117 1-59 (65)
35 2y4t_A DNAJ homolog subfamily 99.0 2.4E-10 8.2E-15 104.1 4.0 65 61-125 382-449 (450)
36 1dax_A Ferredoxin I; electron 95.9 0.0022 7.4E-08 43.1 1.0 60 141-203 4-63 (64)
37 1iqz_A Ferredoxin; iron-sulfer 95.8 0.0029 9.8E-08 44.8 1.5 61 140-204 3-71 (81)
38 1dwl_A Ferredoxin I; electron 94.6 0.018 6E-07 37.4 2.3 58 141-202 2-59 (59)
39 1rof_A Ferredoxin; electron tr 93.7 0.061 2.1E-06 34.9 3.5 57 141-202 3-59 (60)
40 1sj1_A Ferredoxin; thermostabi 92.8 0.041 1.4E-06 36.5 1.7 59 141-203 4-65 (66)
41 1f2g_A Ferredoxin II; electron 91.7 0.046 1.6E-06 35.4 0.8 56 141-201 2-57 (58)
42 2pzi_A Probable serine/threoni 84.0 0.41 1.4E-05 46.6 2.2 44 62-113 630-675 (681)
43 1rgv_A Ferredoxin; electron tr 74.7 1.7 5.7E-05 29.9 2.3 58 143-205 3-64 (80)
44 1xer_A Ferredoxin; electron tr 72.7 0.4 1.4E-05 34.7 -1.5 61 140-203 37-102 (103)
45 2zvs_A Uncharacterized ferredo 72.6 2.7 9.2E-05 29.2 3.0 59 142-205 2-65 (85)
46 2fgo_A Ferredoxin; allochromat 72.5 1.5 5E-05 30.3 1.6 58 143-205 3-64 (82)
47 3eun_A Ferredoxin; electron tr 68.1 3.7 0.00013 28.2 2.9 58 142-204 2-63 (82)
48 1jb0_C Photosystem I iron-sulf 59.4 0.6 2E-05 31.9 -2.7 60 141-203 3-66 (80)
49 7fd1_A FD1, protein (7-Fe ferr 44.2 31 0.0011 24.6 4.6 56 142-204 2-59 (106)
50 1qqr_A Streptokinase domain B; 32.2 16 0.00056 28.3 1.3 32 62-93 33-64 (138)
51 3or1_A Sulfite reductase alpha 31.9 19 0.00064 33.5 1.9 16 188-203 278-293 (437)
52 1bc6_A 7-Fe ferredoxin; electr 30.8 26 0.00088 23.3 2.1 67 143-215 3-70 (77)
53 3f27_D Transcription factor SO 29.1 89 0.0031 21.1 4.8 40 79-123 18-57 (83)
54 3or1_B Sulfite reductase beta; 27.8 38 0.0013 30.7 3.3 48 151-202 187-239 (386)
55 1wz6_A HMG-box transcription f 27.4 1.4E+02 0.0049 20.0 6.4 49 60-124 11-59 (82)
56 4a3n_A Transcription factor SO 26.4 68 0.0023 20.9 3.6 40 79-123 14-53 (71)
57 1jnr_B Adenylylsulfate reducta 26.2 8.9 0.0003 30.0 -1.2 64 141-206 3-69 (150)
58 1kqf_B FDH-N beta S, formate d 26.1 30 0.001 30.0 2.2 61 141-207 126-192 (294)
59 2vpz_B NRFC protein; oxidoredu 25.2 15 0.0005 30.0 -0.1 16 189-204 130-145 (195)
60 1hry_A Human SRY; DNA, DNA-bin 25.0 1.1E+02 0.0037 20.2 4.5 40 79-123 16-55 (76)
61 2cqn_A Formin-binding protein 24.0 1.6E+02 0.0055 20.2 5.3 52 73-125 6-60 (77)
62 1ug2_A 2610100B20RIK gene prod 23.5 39 0.0013 24.5 1.9 22 72-93 67-88 (95)
63 2crj_A SWI/SNF-related matrix- 22.5 2E+02 0.0067 19.9 5.7 48 61-124 12-59 (92)
64 1h98_A Ferredoxin; electron tr 20.9 48 0.0016 22.0 2.0 64 142-213 2-68 (78)
No 1
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=9.4e-22 Score=143.76 Aligned_cols=74 Identities=30% Similarity=0.506 Sum_probs=68.2
Q ss_pred CCCccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcCCCC
Q 024836 57 PPSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDP 130 (262)
Q Consensus 57 ~~~~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~ 130 (262)
.....++|+||||+++++.++||++||+|++++|||+++..+.+.+.|++|++||++|+||.+|..||.++..+
T Consensus 3 ~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~ 76 (79)
T 2dn9_A 3 SGSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAYGSGP 76 (79)
T ss_dssp SSCCSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHHHHHHHSCCCC
T ss_pred CCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhccCcC
Confidence 45567899999999999999999999999999999999877788999999999999999999999999987543
No 2
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=3.2e-21 Score=141.91 Aligned_cols=74 Identities=24% Similarity=0.490 Sum_probs=67.0
Q ss_pred CCccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCC-chHHHHHHHHHHHHHHhcChhHHHHHHhcCCCCC
Q 024836 58 PSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDG-RDSDALIRRIIQAYEILTEYSRLEIIERECIDPF 131 (262)
Q Consensus 58 ~~~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~-~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~f 131 (262)
....++|+||||+++++.++||++||+|++++|||+++.. ..+++.|++|++||++|+||.+|..||.++..+.
T Consensus 6 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~ 80 (82)
T 2ej7_A 6 SGMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDIYDRYGSGPS 80 (82)
T ss_dssp SSSCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHHHHHHTCCCSC
T ss_pred CCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHHHHHHcCcccc
Confidence 3457899999999999999999999999999999999875 3678899999999999999999999999886553
No 3
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=4e-21 Score=140.12 Aligned_cols=73 Identities=27% Similarity=0.436 Sum_probs=66.7
Q ss_pred CCCccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcCCCC
Q 024836 57 PPSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDP 130 (262)
Q Consensus 57 ~~~~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~ 130 (262)
..+..++|+||||+++++.++||++||+|++++|||++.. +.+.+.|++|++||++|+||.+|..||..+..+
T Consensus 3 ~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~ 75 (78)
T 2ctp_A 3 SGSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHA-PGATEAFKAIGTAYAVLSNPEKRKQYDQFGSGP 75 (78)
T ss_dssp CSCSCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSS-HHHHHHHHHHHHHHHHHTSHHHHHHHHHTCSCS
T ss_pred CCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHHCCHHHHHHHHHcCccc
Confidence 3456789999999999999999999999999999999986 578899999999999999999999999977543
No 4
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.85 E-value=3e-21 Score=140.46 Aligned_cols=71 Identities=28% Similarity=0.557 Sum_probs=65.3
Q ss_pred cchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcCCCCCC
Q 024836 61 SSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPFD 132 (262)
Q Consensus 61 ~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~f~ 132 (262)
.++|+||||+++++.++||++||+|++++|||+++. +.+.+.|+.|++||++|+||.+|..||.++..++.
T Consensus 3 ~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~-~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~ 73 (77)
T 1hdj_A 3 KDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKE-PGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEGLK 73 (77)
T ss_dssp CCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCC-TTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGGGCC
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHHCCHHHHHHHHHHcccccc
Confidence 479999999999999999999999999999999986 56889999999999999999999999998765543
No 5
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=6.5e-21 Score=145.33 Aligned_cols=72 Identities=29% Similarity=0.433 Sum_probs=67.2
Q ss_pred CCCCccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcC
Q 024836 56 TPPSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIEREC 127 (262)
Q Consensus 56 ~~~~~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~ 127 (262)
..+...+||+||||+++++.++||+|||+|+++||||+++..+.+.++|++|++||++|+||.+|..||...
T Consensus 12 ~~~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~l 83 (99)
T 2yua_A 12 CSYSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYDRGL 83 (99)
T ss_dssp CSSCSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHHHHHTC
T ss_pred CCCCccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHhc
Confidence 456778999999999999999999999999999999999877788999999999999999999999999853
No 6
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=99.83 E-value=1.9e-20 Score=139.73 Aligned_cols=71 Identities=28% Similarity=0.497 Sum_probs=65.8
Q ss_pred CccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcCCCC
Q 024836 59 STSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDP 130 (262)
Q Consensus 59 ~~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~ 130 (262)
...++|+||||+++++.++||++||+|++++|||+++. +.+++.|++|++||++|+||.+|..||.++..+
T Consensus 15 ~~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~ 85 (88)
T 2cug_A 15 LDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKD-PGAEDRFIQISKAYEILSNEEKRTNYDHYGSGP 85 (88)
T ss_dssp SSSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCS-TTHHHHHHHHHHHHHHHHSHHHHHHHHHHTTCC
T ss_pred CCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHHCCHHHHHHHHHcCCCC
Confidence 45689999999999999999999999999999999987 568899999999999999999999999987653
No 7
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=99.83 E-value=1.1e-20 Score=136.18 Aligned_cols=68 Identities=35% Similarity=0.613 Sum_probs=61.8
Q ss_pred CCccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcCC
Q 024836 58 PSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECI 128 (262)
Q Consensus 58 ~~~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~ 128 (262)
....++|+||||+++++.++||++||+|++++|||++++. .+.|++|++||++|+||.+|..||.+|.
T Consensus 5 ~~~~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~~---~~~f~~i~~Ay~~L~d~~~R~~YD~~g~ 72 (73)
T 2och_A 5 VKETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDG---AEQFKQISQAYEVLSDEKKRQIYDQGGE 72 (73)
T ss_dssp -CCCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTTC---HHHHHHHHHHHHHHTSHHHHHHHHHTC-
T ss_pred cCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcCH---HHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 3457899999999999999999999999999999998764 5889999999999999999999999774
No 8
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=6.3e-21 Score=148.60 Aligned_cols=77 Identities=21% Similarity=0.337 Sum_probs=70.2
Q ss_pred CCccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcCCCCCCCc
Q 024836 58 PSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPFDYP 134 (262)
Q Consensus 58 ~~~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~f~~~ 134 (262)
....+||+||||+++++.++||+|||+|++++|||++++++.+.++|++|++||++|+||.+|..||.++..++..+
T Consensus 17 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~~~~ 93 (112)
T 2ctq_A 17 EDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARYDHWRRSQMSMP 93 (112)
T ss_dssp CCCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHTCSSC
T ss_pred cCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhhhccCCC
Confidence 44678999999999999999999999999999999999777899999999999999999999999999876665533
No 9
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=1.2e-20 Score=140.80 Aligned_cols=72 Identities=36% Similarity=0.525 Sum_probs=66.0
Q ss_pred CCccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcCCCC
Q 024836 58 PSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDP 130 (262)
Q Consensus 58 ~~~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~ 130 (262)
....+||+||||+++++.++||++||+|++++|||+++. +.+.++|++|++||++|+||.+|..||..+..+
T Consensus 4 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~ 75 (88)
T 2ctr_A 4 GSSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKS-PDAEAKFREIAEAYETLSDANRRKEYDTLGHSA 75 (88)
T ss_dssp CCCCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCCS-HHHHHHHHHHHHHHHHHHSSHHHHHHHHTCHHH
T ss_pred CCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC-hHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccc
Confidence 456789999999999999999999999999999999985 678899999999999999999999999976443
No 10
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.83 E-value=2.1e-20 Score=144.97 Aligned_cols=73 Identities=26% Similarity=0.449 Sum_probs=67.5
Q ss_pred CCCccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcCCC
Q 024836 57 PPSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECID 129 (262)
Q Consensus 57 ~~~~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 129 (262)
.....++|+||||+++++.++||++||+|++++|||+++..+.+.++|++|++||++|+||.+|..||.++..
T Consensus 13 ~~~~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~ 85 (109)
T 2ctw_A 13 STSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYDKYGSL 85 (109)
T ss_dssp TSCSCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHTCHH
T ss_pred CCCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHhccc
Confidence 3456789999999999999999999999999999999988778899999999999999999999999997744
No 11
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=1.5e-20 Score=141.40 Aligned_cols=75 Identities=27% Similarity=0.561 Sum_probs=67.9
Q ss_pred CCccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCC-chHHHHHHHHHHHHHHhcChhHHHHHHhcCCCCCC
Q 024836 58 PSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDG-RDSDALIRRIIQAYEILTEYSRLEIIERECIDPFD 132 (262)
Q Consensus 58 ~~~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~-~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~f~ 132 (262)
....+||+||||+++++.++||++||+|++++|||+++.. +.++++|++|++||++|+||.+|..||..+..++.
T Consensus 6 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~ 81 (92)
T 2dmx_A 6 SGMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYDRAGCDSWR 81 (92)
T ss_dssp CCCCCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCSCSSC
T ss_pred CCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccccc
Confidence 3457899999999999999999999999999999999865 46789999999999999999999999998876654
No 12
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=99.82 E-value=2.3e-20 Score=140.65 Aligned_cols=72 Identities=24% Similarity=0.360 Sum_probs=65.4
Q ss_pred CCCccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCC------chHHHHHHHHHHHHHHhcChhHHHHHHhcCC
Q 024836 57 PPSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDG------RDSDALIRRIIQAYEILTEYSRLEIIERECI 128 (262)
Q Consensus 57 ~~~~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~------~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~ 128 (262)
.+...++|+||||+++++.++||+|||+|++++|||+++.. +.+.+.|++|++||++|+||.+|..||....
T Consensus 12 ~~~~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~ 89 (94)
T 1wjz_A 12 QTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRS 89 (94)
T ss_dssp SSSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSC
T ss_pred cCCCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHcc
Confidence 45678999999999999999999999999999999998743 4678999999999999999999999998654
No 13
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=99.82 E-value=6.6e-21 Score=146.27 Aligned_cols=72 Identities=28% Similarity=0.552 Sum_probs=67.3
Q ss_pred cchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcCCCCCC
Q 024836 61 SSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPFD 132 (262)
Q Consensus 61 ~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~f~ 132 (262)
.++|+||||+++++.++||++||+|++++|||+++..+.++++|++|++||++|+||.+|..||..+..++.
T Consensus 3 ~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~ 74 (103)
T 1bq0_A 3 QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFE 74 (103)
T ss_dssp CCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCSHHHHHTTTSTTTSSC
T ss_pred CCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhhhhhc
Confidence 579999999999999999999999999999999987678899999999999999999999999998876554
No 14
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=99.81 E-value=5.8e-20 Score=138.22 Aligned_cols=68 Identities=31% Similarity=0.550 Sum_probs=62.8
Q ss_pred CCccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcCC
Q 024836 58 PSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECI 128 (262)
Q Consensus 58 ~~~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~ 128 (262)
+...++|+||||+++++.++||++||+|++++|||+++.. .++|++|++||++|+||.+|..||.++.
T Consensus 5 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~---~~~f~~i~~Ay~~L~d~~~R~~YD~~~~ 72 (92)
T 2o37_A 5 VKETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGD---TEKFKEISEAFEILNDPQKREIYDQYGL 72 (92)
T ss_dssp CSCCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTCC---HHHHHHHHHHHHHHTSHHHHHHHHHHCH
T ss_pred ccCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCh---HHHHHHHHHHHHHHCCHHHHHHHHHHCH
Confidence 4567899999999999999999999999999999999764 5699999999999999999999999764
No 15
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=99.80 E-value=3.4e-20 Score=141.38 Aligned_cols=71 Identities=35% Similarity=0.552 Sum_probs=63.9
Q ss_pred cchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCC-chHHHHHHHHHHHHHHhcChhHHHHHHhcCCCCC
Q 024836 61 SSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDG-RDSDALIRRIIQAYEILTEYSRLEIIERECIDPF 131 (262)
Q Consensus 61 ~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~-~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~f 131 (262)
.|||+||||+++++.++||++||+|++++|||+++.. ..+++.|++|++||++|+||.+|..||..+..++
T Consensus 2 ~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g~~~~ 73 (99)
T 2lgw_A 2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRYGREGL 73 (99)
T ss_dssp CCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC--
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccc
Confidence 4799999999999999999999999999999999865 3578999999999999999999999999765544
No 16
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=99.77 E-value=1.6e-19 Score=139.79 Aligned_cols=73 Identities=23% Similarity=0.290 Sum_probs=65.8
Q ss_pred CCccchhhhhCCCCCC-CHHHHHHHHHHHHHhhCCCCCCC---CchHHHHHHHHHHHHHHhcChhHHHHHHhcCCCC
Q 024836 58 PSTSSAYAILGVEPSC-SAAELKAAFRAKVKQYHPDVNRD---GRDSDALIRRIIQAYEILTEYSRLEIIERECIDP 130 (262)
Q Consensus 58 ~~~~~~Y~iLgl~~~a-s~~eIK~ayr~l~~~~HPD~~~~---~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~ 130 (262)
....++|+||||++++ +.++||+|||+|++++|||++++ .+.+.+.|++|++||++|+||.+|..||..+.++
T Consensus 12 ~~~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~~~ 88 (109)
T 2qsa_A 12 CGLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLDHP 88 (109)
T ss_dssp TTTSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHCT
T ss_pred cCCCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhccCc
Confidence 3457899999999999 99999999999999999999986 3567899999999999999999999999977543
No 17
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=99.77 E-value=6.8e-19 Score=149.83 Aligned_cols=72 Identities=24% Similarity=0.415 Sum_probs=67.2
Q ss_pred cchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcCCCCCC
Q 024836 61 SSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPFD 132 (262)
Q Consensus 61 ~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~f~ 132 (262)
.|||+||||+++|+.++||+|||+|++++|||++++.+.+.++|++|++||++|+||.+|..||.+|..+..
T Consensus 2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~~~ 73 (210)
T 3apq_A 2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLE 73 (210)
T ss_dssp CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTSHHHHHHHHHHTTTTCC
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHhcccccc
Confidence 479999999999999999999999999999999987788999999999999999999999999998866543
No 18
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=99.75 E-value=2.1e-18 Score=141.50 Aligned_cols=71 Identities=24% Similarity=0.360 Sum_probs=64.3
Q ss_pred CCCccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCc------hHHHHHHHHHHHHHHhcChhHHHHHHhcC
Q 024836 57 PPSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGR------DSDALIRRIIQAYEILTEYSRLEIIEREC 127 (262)
Q Consensus 57 ~~~~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~------~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~ 127 (262)
.+...|||+||||+++++.++||+|||+|++++|||+++... .+.+.|++|++||++|+||.+|..||..+
T Consensus 6 ~~~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~ 82 (155)
T 2l6l_A 6 QMPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQR 82 (155)
T ss_dssp CCCCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHH
T ss_pred cCCCCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 455679999999999999999999999999999999998753 36789999999999999999999999753
No 19
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.2e-18 Score=130.47 Aligned_cols=61 Identities=23% Similarity=0.395 Sum_probs=56.7
Q ss_pred ccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHH
Q 024836 60 TSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLE 121 (262)
Q Consensus 60 ~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~ 121 (262)
..++|+||||+++++.++||+|||+|+++||||+++. +.+.+.|++|++||++|+|+.+|.
T Consensus 26 ~~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~-~~~~~~f~~i~~Ay~~L~d~~~R~ 86 (90)
T 2ys8_A 26 SKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVA-PGSEDAFKAVVNARTALLKNIKSG 86 (90)
T ss_dssp CSSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCC-TTHHHHHHHHHHHHHHHHHHHCCS
T ss_pred CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHHCCccccc
Confidence 4679999999999999999999999999999999987 567899999999999999998874
No 20
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Probab=99.72 E-value=3.7e-19 Score=138.91 Aligned_cols=64 Identities=19% Similarity=0.331 Sum_probs=59.3
Q ss_pred ccchhhhhCCCCCCCH--HHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcC
Q 024836 60 TSSAYAILGVEPSCSA--AELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIEREC 127 (262)
Q Consensus 60 ~~~~Y~iLgl~~~as~--~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~ 127 (262)
..++|+||||+++++. ++||+|||+|++++|||++++ +++|++|++||++|+||.+|..||.++
T Consensus 7 ~~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~----~e~f~~I~~AYevL~d~~~R~~~~~~~ 72 (114)
T 1gh6_A 7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD----EEKMKKMNTLYKKMEDGVKYAHQPDFG 72 (114)
T ss_dssp HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT----TTTTHHHHHHHHHHHHHHHSCCSSCCS
T ss_pred hhhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCcc----HHHHHHHHHHHHHHCCHHHHHHhhhcc
Confidence 4689999999999998 999999999999999999876 478999999999999999999999765
No 21
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=99.72 E-value=3.8e-18 Score=124.79 Aligned_cols=65 Identities=11% Similarity=0.127 Sum_probs=57.2
Q ss_pred ccchhhhhCCCCC--CCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcCCC
Q 024836 60 TSSAYAILGVEPS--CSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECID 129 (262)
Q Consensus 60 ~~~~Y~iLgl~~~--as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 129 (262)
..++|+||||+++ ++.++||+|||+|++++|||++++ .++|++|++||++|+|+.+|..+ .+|..
T Consensus 10 ~~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~~----~~~f~~i~~AYe~L~~~~~r~~~-~~g~~ 76 (79)
T 1faf_A 10 KERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS----HALMQELNSLWGTFKTEVYNLRM-NLGGT 76 (79)
T ss_dssp HHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCC----HHHHHHHHHHHHHHHHHHHHHTT-CCSSC
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCC----HHHHHHHHHHHHHHhhHHHHHHH-hcCCc
Confidence 4679999999999 999999999999999999999764 57899999999999999999873 34433
No 22
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.71 E-value=3.8e-18 Score=127.27 Aligned_cols=66 Identities=14% Similarity=0.177 Sum_probs=59.8
Q ss_pred CCCCCccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCC-chHHHHHHHHHHHHHHhcChhHH
Q 024836 55 STPPSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDG-RDSDALIRRIIQAYEILTEYSRL 120 (262)
Q Consensus 55 ~~~~~~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~-~~a~~~f~~i~~Ay~~L~d~~~R 120 (262)
+.++...++|+||||+++|+.+|||+|||+|+++||||+++++ ..++++|++|++||++|+|...|
T Consensus 10 ~~~~~~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~~~~r 76 (88)
T 1iur_A 10 PRGSILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFL 76 (88)
T ss_dssp CSSSCHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCccHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHhhccc
Confidence 3567788999999999999999999999999999999999876 35789999999999999988665
No 23
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=99.70 E-value=2.6e-17 Score=141.17 Aligned_cols=83 Identities=17% Similarity=0.234 Sum_probs=68.3
Q ss_pred CCCccccccccCCCCCCCCCCccchhhhhCCCCC--CCHHHHHHHHHHHHHhhCCCCCCCCc-----hHHHHHHHHHHHH
Q 024836 39 PSKFTVNCTERTGENASTPPSTSSAYAILGVEPS--CSAAELKAAFRAKVKQYHPDVNRDGR-----DSDALIRRIIQAY 111 (262)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~iLgl~~~--as~~eIK~ayr~l~~~~HPD~~~~~~-----~a~~~f~~i~~Ay 111 (262)
...++..|.... ++....|||+||||+++ ++..+||++||+|++++|||++++.+ .+.++|++|++||
T Consensus 26 ~~~fC~~c~~~q-----~~~~~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY 100 (207)
T 3bvo_A 26 DRFFCPQCRALQ-----APDPTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAY 100 (207)
T ss_dssp CCCBCTTTCCBC-----CCCTTCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccC-----CCCCCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 345566666544 23346799999999986 79999999999999999999998653 2557899999999
Q ss_pred HHhcChhHHHHHHhc
Q 024836 112 EILTEYSRLEIIERE 126 (262)
Q Consensus 112 ~~L~d~~~R~~Yd~~ 126 (262)
+||+||.+|..||..
T Consensus 101 ~vLsdp~~R~~Yd~~ 115 (207)
T 3bvo_A 101 KTLLAPLSRGLYLLK 115 (207)
T ss_dssp HHHHSHHHHHHHHHH
T ss_pred HHHCCHHHHHHHHHH
Confidence 999999999999963
No 24
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=99.70 E-value=1.8e-17 Score=138.55 Aligned_cols=67 Identities=21% Similarity=0.290 Sum_probs=61.1
Q ss_pred ccchhhhhCCCCCCC--HHHHHHHHHHHHHhhCCCCCCCCch-----HHHHHHHHHHHHHHhcChhHHHHHHhc
Q 024836 60 TSSAYAILGVEPSCS--AAELKAAFRAKVKQYHPDVNRDGRD-----SDALIRRIIQAYEILTEYSRLEIIERE 126 (262)
Q Consensus 60 ~~~~Y~iLgl~~~as--~~eIK~ayr~l~~~~HPD~~~~~~~-----a~~~f~~i~~Ay~~L~d~~~R~~Yd~~ 126 (262)
..|||+||||+++++ ..+||++||+|+++||||++++.+. +.+.|+.|++||++|+||.+|..||..
T Consensus 3 ~~d~Y~iLgl~~~a~id~~eIk~aYr~l~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~ 76 (174)
T 3hho_A 3 AMNYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQTLKDPLRRAEYLLS 76 (174)
T ss_dssp -CCHHHHTTCCSSSCCCHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred CCCHHHHcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHH
Confidence 468999999999987 9999999999999999999987643 668999999999999999999999984
No 25
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=99.69 E-value=1.4e-18 Score=158.66 Aligned_cols=71 Identities=30% Similarity=0.563 Sum_probs=0.0
Q ss_pred CCCCccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcC
Q 024836 56 TPPSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIEREC 127 (262)
Q Consensus 56 ~~~~~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~ 127 (262)
..|..+|||+||||+++|+.+|||+|||+|+++||||++++ +.++++|++|++||++|+||.+|..||+++
T Consensus 23 ~~m~~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~-~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~ 93 (329)
T 3lz8_A 23 NAMELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKE-NDAEAKFKDLAEAWEVLKDEQRRAEYDQLW 93 (329)
T ss_dssp ------------------------------------------------------------------------
T ss_pred ccccccCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCC-hHHHHHHHHHHHHHHHhhhhhhhcccchhh
Confidence 45667899999999999999999999999999999999986 478899999999999999999999999973
No 26
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C
Probab=99.68 E-value=5.2e-18 Score=141.30 Aligned_cols=65 Identities=18% Similarity=0.296 Sum_probs=57.6
Q ss_pred ccchhhhhCCCCCCC--HHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcCC
Q 024836 60 TSSAYAILGVEPSCS--AAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECI 128 (262)
Q Consensus 60 ~~~~Y~iLgl~~~as--~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~ 128 (262)
..++|+||||+++|+ .++||+|||+|++++|||++++ +++|++|++||++|+||.+|+.||++|.
T Consensus 10 ~~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~----~e~F~~I~~AYevLsdp~kR~~YD~~G~ 76 (174)
T 2pf4_E 10 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD----EEKMKKMNTLYKKMEDGVKYAHQPDFGG 76 (174)
T ss_dssp HHHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---C----CTTTTHHHHHHHHHHHHHHHHTSCGGGG
T ss_pred cccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCC----HHHHHHHHHHHHHhCCHHHHHHHhccCC
Confidence 468999999999998 6999999999999999999876 3689999999999999999999999874
No 27
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=99.67 E-value=4.2e-17 Score=135.94 Aligned_cols=66 Identities=20% Similarity=0.248 Sum_probs=60.7
Q ss_pred chhhhhCCCCCC--CHHHHHHHHHHHHHhhCCCCCCCCch-----HHHHHHHHHHHHHHhcChhHHHHHHhcC
Q 024836 62 SAYAILGVEPSC--SAAELKAAFRAKVKQYHPDVNRDGRD-----SDALIRRIIQAYEILTEYSRLEIIEREC 127 (262)
Q Consensus 62 ~~Y~iLgl~~~a--s~~eIK~ayr~l~~~~HPD~~~~~~~-----a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~ 127 (262)
|||+||||++++ +..+||++||+|+++||||++++.+. +.+.|+.|++||++|+||.+|..||...
T Consensus 2 d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l 74 (171)
T 1fpo_A 2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSL 74 (171)
T ss_dssp HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHT
T ss_pred CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHh
Confidence 799999999999 99999999999999999999987542 4579999999999999999999999853
No 28
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.66 E-value=3.6e-17 Score=117.14 Aligned_cols=61 Identities=21% Similarity=0.254 Sum_probs=54.2
Q ss_pred CCCCccchhhhhCCCC-CCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHH
Q 024836 56 TPPSTSSAYAILGVEP-SCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRL 120 (262)
Q Consensus 56 ~~~~~~~~Y~iLgl~~-~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R 120 (262)
..|+..++|+||||++ +++.++||++||+|++++|||++++ .+.|++|++||++|+++..|
T Consensus 9 ~~m~~~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~g~----~~~f~~i~~Aye~L~~~~~r 70 (71)
T 2guz_A 9 PKMNSKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGS----PFLATKINEAKDFLEKRGIS 70 (71)
T ss_dssp SSCCHHHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGTCC----HHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC----HHHHHHHHHHHHHHhhhhhc
Confidence 4577889999999999 7999999999999999999999643 46999999999999987543
No 29
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J
Probab=99.62 E-value=3.7e-17 Score=136.96 Aligned_cols=63 Identities=13% Similarity=0.255 Sum_probs=58.3
Q ss_pred cchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCch---HHHHHHHHHHHHHHhcChhHHHHH
Q 024836 61 SSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRD---SDALIRRIIQAYEILTEYSRLEII 123 (262)
Q Consensus 61 ~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~---a~~~f~~i~~Ay~~L~d~~~R~~Y 123 (262)
.++|+||||+++++.++||+|||+|++++|||++++... ++++|++|++||++|+|+.+|..|
T Consensus 117 ~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~kR~~Y 182 (182)
T 1n4c_A 117 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY 182 (182)
T ss_dssp CCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred cchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHhhhhC
Confidence 589999999999999999999999999999999986543 789999999999999999998765
No 30
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Probab=99.62 E-value=7e-17 Score=121.11 Aligned_cols=56 Identities=13% Similarity=0.241 Sum_probs=51.2
Q ss_pred cchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCc---hHHHHHHHHHHHHHHhcC
Q 024836 61 SSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGR---DSDALIRRIIQAYEILTE 116 (262)
Q Consensus 61 ~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~---~a~~~f~~i~~Ay~~L~d 116 (262)
.++|++|||++.|+.+|||+|||+|+++||||++++.+ .++++|+.|++||++|.+
T Consensus 33 ~~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~ 91 (92)
T 2qwo_B 33 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN 91 (92)
T ss_dssp CCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence 36899999999999999999999999999999998754 378899999999999974
No 31
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=99.60 E-value=3.8e-16 Score=131.20 Aligned_cols=66 Identities=21% Similarity=0.279 Sum_probs=59.0
Q ss_pred Cccchhhhh------CCCC-CCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcC
Q 024836 59 STSSAYAIL------GVEP-SCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIEREC 127 (262)
Q Consensus 59 ~~~~~Y~iL------gl~~-~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~ 127 (262)
...|||+|| |+++ +++..+||++||+|++++|||++++ +.+.|+.|++||++|+||.+|..||...
T Consensus 9 ~~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~---a~~~f~~i~~AY~vL~dp~~R~~Yd~~l 81 (181)
T 3uo3_A 9 FTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQ---GSEQSSTLNQAYHTLKDPLRRSQYMLKL 81 (181)
T ss_dssp CSCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCS---CSSGGGSHHHHHHHHHSHHHHHHHHHHH
T ss_pred CCCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCcc---HHHHHHHHHHHHHHHcChHHHHHHHHHH
Confidence 346899999 4665 8999999999999999999999876 4678999999999999999999999843
No 32
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=99.59 E-value=1.5e-16 Score=159.37 Aligned_cols=74 Identities=23% Similarity=0.371 Sum_probs=40.7
Q ss_pred CCCccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcCCCC
Q 024836 57 PPSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDP 130 (262)
Q Consensus 57 ~~~~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~ 130 (262)
.....|||+||||+++|+.++||+|||+|++++|||++++.+.+.++|++|++||++|+||.+|+.||++|..+
T Consensus 17 ~~~~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~~~ 90 (780)
T 3apo_A 17 GRHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKG 90 (780)
T ss_dssp ------CHHHHTCCTTCCHHHHHHHHCC-----------------------CTHHHHHHSHHHHHHHTTC----
T ss_pred CCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHHcChHHHHHHHhhcccc
Confidence 34467899999999999999999999999999999999876788999999999999999999999999987654
No 33
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}
Probab=99.57 E-value=2.9e-16 Score=120.97 Aligned_cols=57 Identities=9% Similarity=0.186 Sum_probs=50.9
Q ss_pred cchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCC---c----hHHHHHHHHHHHHHHhcChh
Q 024836 61 SSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDG---R----DSDALIRRIIQAYEILTEYS 118 (262)
Q Consensus 61 ~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~---~----~a~~~f~~i~~Ay~~L~d~~ 118 (262)
.+||+|||++. |+.++||+|||+|++++|||++++. + .++++|+.|++||++|+|+.
T Consensus 41 ~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~ 104 (106)
T 3ag7_A 41 SGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLG 104 (106)
T ss_dssp SCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCcc
Confidence 57999999996 9999999999999999999998642 1 46899999999999999975
No 34
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.11 E-value=7.6e-11 Score=82.57 Aligned_cols=56 Identities=16% Similarity=0.122 Sum_probs=49.0
Q ss_pred CCccchhhhhCCCCC---CCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcCh
Q 024836 58 PSTSSAYAILGVEPS---CSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEY 117 (262)
Q Consensus 58 ~~~~~~Y~iLgl~~~---as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~ 117 (262)
|+..+.|.||||+++ ++.++|+++||+|+..+|||+.+. ......|++|+++|...
T Consensus 1 mt~~EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkGGS----~yl~~ki~~Ake~l~~~ 59 (65)
T 2guz_B 1 MTLDESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGGS----FYLQSKVYRAAERLKWE 59 (65)
T ss_dssp CCHHHHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGTCC----HHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHHHHH
Confidence 355679999999999 999999999999999999999655 46778999999999654
No 35
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.97 E-value=2.4e-10 Score=104.12 Aligned_cols=65 Identities=25% Similarity=0.389 Sum_probs=55.6
Q ss_pred cchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCC---chHHHHHHHHHHHHHHhcChhHHHHHHh
Q 024836 61 SSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDG---RDSDALIRRIIQAYEILTEYSRLEIIER 125 (262)
Q Consensus 61 ~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~---~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~ 125 (262)
.++|++||+.+.++.++|+++|+++++++|||+.+.+ ..+++.|++|++||++|+|+++|..||+
T Consensus 382 ~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~ 449 (450)
T 2y4t_A 382 RDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD 449 (450)
T ss_dssp CCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-----
T ss_pred hhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHhccC
Confidence 3689999999999999999999999999999998764 3578899999999999999999999997
No 36
>1dax_A Ferredoxin I; electron transport, electron-transfer protein, 4Fe-4S cluster; NMR {Desulfovibrio africanus} SCOP: d.58.1.4 PDB: 1dfd_A 1fxr_A
Probab=95.88 E-value=0.0022 Score=43.09 Aligned_cols=60 Identities=28% Similarity=0.548 Sum_probs=41.9
Q ss_pred hhhhccccccCCCCCCCCCCCCCceeeecCCCccccccCCCCchhHHHHHhhcCCccceEEeC
Q 024836 141 VFVNEVLCVGKGCPYSCVKTAPNAFSYSSSTGTARAISQGHGQDYRVQLAVGQCPRSCIHYVT 203 (262)
Q Consensus 141 iFv~~~~c~G~Gc~~~c~~~~p~~F~~~~~~G~ar~~~q~~~~~~~vq~A~~~CP~~~I~~v~ 203 (262)
+.+|...|+|+| .|+..+|..|.+....|.+.........-......+..||.+||.+..
T Consensus 4 ~~id~~~C~~Cg---~C~~~CP~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~CP~~Ai~~~~ 63 (64)
T 1dax_A 4 FYVDQDECIACE---SCVEIAPGAFAMDPEIEKAYVKDVEGASQEEVEEAMDTCPVQCIHWED 63 (64)
T ss_dssp CEECSTTCCSCC---HHHHHCTTTEEECSSSSSEEECCGGGSCHHHHHHHHHHSSSCCEECCC
T ss_pred EEEccccCCCch---HHHHhCCccEeEcCCCCEEEEecCCCcchhHHHHHHHhCCHhhEeeec
Confidence 567888999988 788888888888654344443321123334567889999999999764
No 37
>1iqz_A Ferredoxin; iron-sulfer protein, ultlahigh resolution analysis, geometry of [4Fe-4S] cluster, electron transport; 0.92A {Bacillus thermoproteolyticus} SCOP: d.58.1.4 PDB: 1ir0_A 1wtf_A*
Probab=95.83 E-value=0.0029 Score=44.82 Aligned_cols=61 Identities=21% Similarity=0.368 Sum_probs=43.0
Q ss_pred hhhhhccccccCCCCCCCCCCCCCceeeecCCCccccccC------C--CCchhHHHHHhhcCCccceEEeCc
Q 024836 140 DVFVNEVLCVGKGCPYSCVKTAPNAFSYSSSTGTARAISQ------G--HGQDYRVQLAVGQCPRSCIHYVTP 204 (262)
Q Consensus 140 ~iFv~~~~c~G~Gc~~~c~~~~p~~F~~~~~~G~ar~~~q------~--~~~~~~vq~A~~~CP~~~I~~v~~ 204 (262)
.+.+|...|+|+| .|+..+|..|.++. .|.+..... . .+........+..||++||++...
T Consensus 3 ~v~vd~~~CigCg---~C~~~CP~~~~~~~-~g~~~~~~~~~~~~~~~~~~~c~~C~~C~~~CP~~AI~~~~~ 71 (81)
T 1iqz_A 3 YTIVDKETCIACG---ACGAAAPDIYDYDE-DGIAYVTLDDNQGIVEVPDILIDDMMDAFEGCPTDSIKVADE 71 (81)
T ss_dssp EEEECTTTCCCCS---HHHHHCTTTEEECT-TSCEEETTTTTSSCSCCCGGGHHHHHHHHHHCTTCCEEEESS
T ss_pred EEEEecccCcccC---hhhHhCchheeeCC-CCeEEEeccCccccCCCCHHHHHHHHHHHHhCCHhHEEEecC
Confidence 3568889999988 78899999998853 344443321 0 122344678999999999999764
No 38
>1dwl_A Ferredoxin I; electron transfer, model, heteronuclear docking; HET: HEC; NMR {Desulfomicrobium norvegicum} SCOP: i.4.1.1
Probab=94.60 E-value=0.018 Score=37.44 Aligned_cols=58 Identities=22% Similarity=0.403 Sum_probs=37.3
Q ss_pred hhhhccccccCCCCCCCCCCCCCceeeecCCCccccccCCCCchhHHHHHhhcCCccceEEe
Q 024836 141 VFVNEVLCVGKGCPYSCVKTAPNAFSYSSSTGTARAISQGHGQDYRVQLAVGQCPRSCIHYV 202 (262)
Q Consensus 141 iFv~~~~c~G~Gc~~~c~~~~p~~F~~~~~~G~ar~~~q~~~~~~~vq~A~~~CP~~~I~~v 202 (262)
+.++...|+|+| .|+..+|..|.+....|..... .....-..-...+..||.+||.|.
T Consensus 2 i~i~~~~C~~C~---~C~~~Cp~~~~~~~~~~~~~~~-~~~~~c~~C~~C~~~CP~~Ai~~~ 59 (59)
T 1dwl_A 2 IVIDHEECIGCE---SCVELCPEVFAMIDGEEKAMVT-APDSTAECAQDAIDACPVEAISKE 59 (59)
T ss_dssp EEESSCCCSSCC---GGGGTSTTTEEEEECSSCEEES-CTTCCCGGGGTGGGGSTTCCEEEC
T ss_pred eEEChhhCcChh---HHHHHCCHHheecCCCCcEEEe-cChhhhhHHHHHHHhCCHhhEEcC
Confidence 356777899987 7889999888873333443331 011112234467899999999874
No 39
>1rof_A Ferredoxin; electron transport, iron-sulfur; NMR {Thermotoga maritima} SCOP: d.58.1.4 PDB: 1vjw_A
Probab=93.66 E-value=0.061 Score=34.87 Aligned_cols=57 Identities=25% Similarity=0.463 Sum_probs=37.6
Q ss_pred hhhhccccccCCCCCCCCCCCCCceeeecCCCccccccCCCCchhHHHHHhhcCCccceEEe
Q 024836 141 VFVNEVLCVGKGCPYSCVKTAPNAFSYSSSTGTARAISQGHGQDYRVQLAVGQCPRSCIHYV 202 (262)
Q Consensus 141 iFv~~~~c~G~Gc~~~c~~~~p~~F~~~~~~G~ar~~~q~~~~~~~vq~A~~~CP~~~I~~v 202 (262)
+.++...|+|+| .|+..+|..|.++.. |...... ....-......+..||.+||.+.
T Consensus 3 ~~i~~~~C~~C~---~C~~~Cp~~~~~~~~-~~~~~~~-~~~~c~~C~~C~~~CP~~Ai~~~ 59 (60)
T 1rof_A 3 VRVDADACIGCG---VCENLCPDVFQLGDD-GKAKVLQ-PETDLPCAKDAADSCPTGAISVE 59 (60)
T ss_dssp SEECTTTCCSCC---SSTTTCTTTBCCCSS-SCCCBSC-SSCCSTTHHHHHHHCTTCCEECC
T ss_pred EEEchhhCCCCh---HHHHhCcHHHeECCC-CCEeecC-chhhHHHHHHHHHhCCHhHEEEe
Confidence 456778899987 899999987776432 3332221 11222234578899999999875
No 40
>1sj1_A Ferredoxin; thermostability, iron-sulfur cluster, hexammine cobalt(III), electron transport; HET: NCO; 1.50A {Pyrococcus furiosus} SCOP: d.58.1.4 PDB: 1siz_A* 2z8q_A 3pni_A
Probab=92.83 E-value=0.041 Score=36.45 Aligned_cols=59 Identities=24% Similarity=0.416 Sum_probs=39.3
Q ss_pred hhhhccccccCCCCCCCCCCCCCceeeecCCCccccccCCCCc---hhHHHHHhhcCCccceEEeC
Q 024836 141 VFVNEVLCVGKGCPYSCVKTAPNAFSYSSSTGTARAISQGHGQ---DYRVQLAVGQCPRSCIHYVT 203 (262)
Q Consensus 141 iFv~~~~c~G~Gc~~~c~~~~p~~F~~~~~~G~ar~~~q~~~~---~~~vq~A~~~CP~~~I~~v~ 203 (262)
+.+|...|+|+| .|+..+|..|.++. .|......+.... .......+..||.+||.+..
T Consensus 4 ~~id~~~C~~C~---~C~~~Cp~~~~~~~-~~~~~~~~~~~~~~~~c~~c~~C~~~CP~~Ai~~~~ 65 (66)
T 1sj1_A 4 VSVDQDTCIGDA---ICASLCPDVFEMND-EGKAQPKVEVIEDEELYNCAKEAMEACPVSAITIEE 65 (66)
T ss_dssp EEECTTTCCCCC---HHHHHCTTTEEECT-TSCEEESCSCBCCHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred EEECcccCcCch---HHHHhCCceEEECC-CCceeecccCCCcHHHHHHHHHHHhhCCHhhEEEec
Confidence 567888999987 78888888888743 3444333221112 12346788999999999853
No 41
>1f2g_A Ferredoxin II; electron transport, FDII desulfovibrio gigas; NMR {Desulfovibrio gigas} SCOP: d.58.1.4 PDB: 1fxd_A
Probab=91.67 E-value=0.046 Score=35.44 Aligned_cols=56 Identities=23% Similarity=0.423 Sum_probs=36.6
Q ss_pred hhhhccccccCCCCCCCCCCCCCceeeecCCCccccccCCCCchhHHHHHhhcCCccceEE
Q 024836 141 VFVNEVLCVGKGCPYSCVKTAPNAFSYSSSTGTARAISQGHGQDYRVQLAVGQCPRSCIHY 201 (262)
Q Consensus 141 iFv~~~~c~G~Gc~~~c~~~~p~~F~~~~~~G~ar~~~q~~~~~~~vq~A~~~CP~~~I~~ 201 (262)
+.++ ..|+|+| .|+..+|..|.+.. .|......+....-..-...+..||.+||.+
T Consensus 2 v~id-~~C~~C~---~C~~~CP~~~~~~~-~~~~~~~~~~~~~C~~C~~C~~~CP~~Ai~~ 57 (58)
T 1f2g_A 2 IEVN-DDCMACE---ACVEICPDVFEMNE-EGDKAVVINPDSDLDCVEEAIDSCPAEAIVR 57 (58)
T ss_dssp CBCT-TTCCCCC---HHHHHCTTTEEECS-SSSSEEESCTTCCSTHHHHHHHTCSSCCCBC
T ss_pred cEEC-CcCccch---HHHHhCCccEEECC-CCcEEEeCCCccchHHHHHHHhhCChhhEEe
Confidence 3466 7899987 78888888777743 2333332211223344677899999999976
No 42
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=84.00 E-value=0.41 Score=46.63 Aligned_cols=44 Identities=16% Similarity=0.148 Sum_probs=35.0
Q ss_pred chhhhhCCCCCCCH--HHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHH
Q 024836 62 SAYAILGVEPSCSA--AELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEI 113 (262)
Q Consensus 62 ~~Y~iLgl~~~as~--~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~ 113 (262)
++|.+||++.+... .+|+++||+|++..+++ .+++..|..|+.|
T Consensus 630 ~~~~~lG~~~~~~~lr~~~~~ayr~la~~~~~~--------~~r~~lvd~a~~v 675 (681)
T 2pzi_A 630 STNHILGFPFTSHGLRLGVEASLRSLARVAPTQ--------RHRYTLVDMANKV 675 (681)
T ss_dssp SSSEETTEESSHHHHHHHHHHHHHHHHHHCSSH--------HHHHHHHHHHHHH
T ss_pred CCcccCCCCCChHHHHHHHHHHHHHHHHhCCCh--------HHHHHHHHHhccc
Confidence 48999999766544 77999999999966544 4788888888876
No 43
>1rgv_A Ferredoxin; electron transport; 2.90A {Thauera aromatica} SCOP: d.58.1.1
Probab=74.72 E-value=1.7 Score=29.87 Aligned_cols=58 Identities=17% Similarity=0.205 Sum_probs=32.2
Q ss_pred hhccccccCCCCCCCCCCCCC-ceeeecCCCccccccC---CCCchhHHHHHhhcCCccceEEeCcc
Q 024836 143 VNEVLCVGKGCPYSCVKTAPN-AFSYSSSTGTARAISQ---GHGQDYRVQLAVGQCPRSCIHYVTPS 205 (262)
Q Consensus 143 v~~~~c~G~Gc~~~c~~~~p~-~F~~~~~~G~ar~~~q---~~~~~~~vq~A~~~CP~~~I~~v~~~ 205 (262)
++...|+|+| .|+..+|. .+.+.+.. ...... +-+.......-+..||.+||.+....
T Consensus 3 ~~~~~C~~C~---~C~~~CP~~ai~~~~~~--~~~~~~~C~~C~~~~~~~~C~~~CP~~Ai~~~~~~ 64 (80)
T 1rgv_A 3 YINDDCTACD---ACVEECPNEAITPGDPI--YVIDPTKCSECVGAFDEPQCRLVCPADCIPDNPDY 64 (80)
T ss_dssp CCCSCCCCCC---TTTTTCTTCCEECCSSS--CEECTTTCCTTTTTCSSCHHHHHCSSCCCCBCGGG
T ss_pred EeCCCCcChh---hHHHHcChhccCcCCCe--eEEcchhCcCCCCcCCccHHHHhcCcccEEecCCc
Confidence 4567899987 78888884 56553321 111000 00100001145788999999987544
No 44
>1xer_A Ferredoxin; electron transport, iron-sulfur, duplication; 2.00A {Sulfolobus tokodaii str} SCOP: d.58.1.3 PDB: 2vkr_A
Probab=72.71 E-value=0.4 Score=34.73 Aligned_cols=61 Identities=25% Similarity=0.454 Sum_probs=35.2
Q ss_pred hhhhhccccccCCCCCCCCCCCC-CceeeecCCCcccccc--CCCCch--hHHHHHhhcCCccceEEeC
Q 024836 140 DVFVNEVLCVGKGCPYSCVKTAP-NAFSYSSSTGTARAIS--QGHGQD--YRVQLAVGQCPRSCIHYVT 203 (262)
Q Consensus 140 ~iFv~~~~c~G~Gc~~~c~~~~p-~~F~~~~~~G~ar~~~--q~~~~~--~~vq~A~~~CP~~~I~~v~ 203 (262)
.+.++...|+||| .|+..+| ..|.+....+...... ...+.+ ..-..-+..||.+||.+..
T Consensus 37 ~~~id~~~C~~Cg---~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~Ai~~~~ 102 (103)
T 1xer_A 37 IVGVDFDLCIADG---SCINACPVNVFQWYDTPGHPASEKKADPVNEQACIFCMACVNVCPVAAIDVKP 102 (103)
T ss_dssp SEEEETTTCCCCC---HHHHHCTTCCCEEEECTTCSSCSEEEECTTGGGCCCCCHHHHHCTTCCEEECC
T ss_pred eEEEehhhCCChh---hHHHHcCccCeecccccCccccccceeecCcccccChhhHHHhccccceEecC
Confidence 4668888999988 6777777 4666644332211000 000111 1113567899999999864
No 45
>2zvs_A Uncharacterized ferredoxin-like protein YFHL; electron transport, [4Fe-4S] clusters, iron-SULF clusters, reduction potential; 1.65A {Escherichia coli}
Probab=72.62 E-value=2.7 Score=29.24 Aligned_cols=59 Identities=19% Similarity=0.242 Sum_probs=32.3
Q ss_pred hhhccccccCCCCCCCCCCCCC-ceeeecCCCcccccc---CCCCchhHHHHHhhcCCc-cceEEeCcc
Q 024836 142 FVNEVLCVGKGCPYSCVKTAPN-AFSYSSSTGTARAIS---QGHGQDYRVQLAVGQCPR-SCIHYVTPS 205 (262)
Q Consensus 142 Fv~~~~c~G~Gc~~~c~~~~p~-~F~~~~~~G~ar~~~---q~~~~~~~vq~A~~~CP~-~~I~~v~~~ 205 (262)
+++...|+|+| .|+..+|. .+.+... ...... .+-+.....-.-+..||. +||.+....
T Consensus 2 ~~~~~~C~~C~---~C~~~CP~~ai~~~~~--~~~~~~~~C~~C~~~~~~~~C~~~CP~~~Ai~~~~~~ 65 (85)
T 2zvs_A 2 LLITKKCINCD---MCEPECPNEAISMGDH--IYEINSDKCTECVGHYETPTCQKVCPIPNTIVKDPAH 65 (85)
T ss_dssp EEECTTCCCCC---TTTTTCTTCCEECCSS--SCEECGGGCCTTTTTCSSCHHHHHCSSCCEEECTTSC
T ss_pred EEeCCcCcChh---HHHHHCchhccCcCCC--ceEEeChhccCCCCcCCccHhhHhCcCCCCEEecCCC
Confidence 35667899987 78888884 4554322 111100 000000000145788999 999987653
No 46
>2fgo_A Ferredoxin; allochromatium vinosum, [4Fe-4S] cluster, reduction potential, iron binding protein electron transport; 1.32A {Pseudomonas aeruginosa}
Probab=72.50 E-value=1.5 Score=30.34 Aligned_cols=58 Identities=19% Similarity=0.241 Sum_probs=32.2
Q ss_pred hhccccccCCCCCCCCCCCCC-ceeeecCCCccccccC---CCCchhHHHHHhhcCCccceEEeCcc
Q 024836 143 VNEVLCVGKGCPYSCVKTAPN-AFSYSSSTGTARAISQ---GHGQDYRVQLAVGQCPRSCIHYVTPS 205 (262)
Q Consensus 143 v~~~~c~G~Gc~~~c~~~~p~-~F~~~~~~G~ar~~~q---~~~~~~~vq~A~~~CP~~~I~~v~~~ 205 (262)
++...|+++| .|+..+|. .+.+... ....... +-+.......-+..||.+||.+....
T Consensus 3 ~~~~~C~~C~---~C~~~CP~~ai~~~~~--~~~~~~~~C~~C~~~~~~~~C~~~CP~~Ai~~~~~~ 64 (82)
T 2fgo_A 3 KITDDCINCD---VCEPECPNGAISQGEE--IYVIDPNLCTECVGHYDEPQCQQVCPVDCIPLDDAN 64 (82)
T ss_dssp CCCTTCCCCC---TTGGGCTTCCEEECSS--SEEECTTTCCTTTTTCSSCHHHHHCTTCCCCBCTTS
T ss_pred eeCCCCCChh---hHHHHCChhccCCCCC--eEEEEchhCccCCCcCCCCHhHhhCCcccEEccCCC
Confidence 4567899987 78888884 5665332 1111000 00100000145788999999987654
No 47
>3eun_A Ferredoxin; electron transport, [4Fe-4S] cluster, 4Fe-4S, iron, iron-sulfur, metal-binding, transport; 1.05A {Allochromatium vinosum} SCOP: d.58.1.1 PDB: 1blu_A 3exy_A
Probab=68.10 E-value=3.7 Score=28.24 Aligned_cols=58 Identities=21% Similarity=0.261 Sum_probs=32.4
Q ss_pred hhhccccccCCCCCCCCCCCCC-ceeeecCCCcccccc---CCCCchhHHHHHhhcCCccceEEeCc
Q 024836 142 FVNEVLCVGKGCPYSCVKTAPN-AFSYSSSTGTARAIS---QGHGQDYRVQLAVGQCPRSCIHYVTP 204 (262)
Q Consensus 142 Fv~~~~c~G~Gc~~~c~~~~p~-~F~~~~~~G~ar~~~---q~~~~~~~vq~A~~~CP~~~I~~v~~ 204 (262)
+++...|+|+| .|+..+|. .+.+... ...... .+-+.....-.-+..||.+||.+...
T Consensus 2 ~~~~~~C~~C~---~C~~~CP~~ai~~~~~--~~~i~~~~C~~C~~~~~~~~C~~~CP~~Ai~~~~~ 63 (82)
T 3eun_A 2 LMITDECINCD---VCEPECPNGAISQGDE--TYVIEPSLCTECVGHYETSQCVEVCPVDAIIKDPS 63 (82)
T ss_dssp EEECTTCCCCC---TTGGGCTTCCEEECSS--SEEECGGGCCTTTTTCSSCHHHHHCTTCCEEECGG
T ss_pred eEeCCCCcCcc---chHHHCChhheEcCCC--ceEEchhhcCCCCCCCCccHHHHhCCccceEEcCC
Confidence 35667899977 78888886 4455321 111100 01110000114678999999999865
No 48
>1jb0_C Photosystem I iron-sulfur center; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: d.58.1.2 PDB: 3pcq_C* 1k0t_A 2wsc_C* 2wse_C* 2wsf_C* 3lw5_C* 2o01_C*
Probab=59.37 E-value=0.6 Score=31.92 Aligned_cols=60 Identities=17% Similarity=0.300 Sum_probs=32.8
Q ss_pred hhhhccccccCCCCCCCCCCCC-CceeeecCCCc-ccccc--CCCCchhHHHHHhhcCCccceEEeC
Q 024836 141 VFVNEVLCVGKGCPYSCVKTAP-NAFSYSSSTGT-ARAIS--QGHGQDYRVQLAVGQCPRSCIHYVT 203 (262)
Q Consensus 141 iFv~~~~c~G~Gc~~~c~~~~p-~~F~~~~~~G~-ar~~~--q~~~~~~~vq~A~~~CP~~~I~~v~ 203 (262)
++++...|+++| .|+..+| ..|.+....+. ..... .....-..-..-+..||.+||.+..
T Consensus 3 ~~~~~~~C~~Cg---~C~~~CP~~a~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~ 66 (80)
T 1jb0_C 3 TVKIYDTCIGCT---QCVRACPTDVLEMVPWDGCKAGQIASSPRTEDCVGCKRCETACPTDFLSIRV 66 (80)
T ss_dssp EEEEETTCCCCC---HHHHHCTTCCCEEEECSSSTTSEEEECTTGGGCCCCCHHHHHCCSSSCSEEE
T ss_pred CcccCCcCcChh---HHHHHCCcccccccccccccccccccCCCCCcCcCcCChhhhCCCCccEeee
Confidence 345677899987 6777777 45666543221 11110 0000111123567889999998754
No 49
>7fd1_A FD1, protein (7-Fe ferredoxin I); electron transport, iron-sulfur; 1.30A {Azotobacter vinelandii} SCOP: d.58.1.2 PDB: 1fda_A 1fdb_A 1fer_A 1axq_A 5fd1_A 6fdr_A 6fd1_A 7fdr_A 1frh_A 1fri_A 1fdd_A 1frl_A 1d3w_A 1frm_A 1frx_A 1g6b_A 1pc4_A 1frj_A 2fd2_A 1fd2_A ...
Probab=44.25 E-value=31 Score=24.61 Aligned_cols=56 Identities=21% Similarity=0.331 Sum_probs=29.0
Q ss_pred hhhccccccCCCCC-CCCCCCCC-ceeeecCCCccccccCCCCchhHHHHHhhcCCccceEEeCc
Q 024836 142 FVNEVLCVGKGCPY-SCVKTAPN-AFSYSSSTGTARAISQGHGQDYRVQLAVGQCPRSCIHYVTP 204 (262)
Q Consensus 142 Fv~~~~c~G~Gc~~-~c~~~~p~-~F~~~~~~G~ar~~~q~~~~~~~vq~A~~~CP~~~I~~v~~ 204 (262)
+++...|++|| . .|+..+|. .+.+.. +........ -..-..-+..||.+||.+...
T Consensus 2 ~~~~~~C~~C~--~~~C~~~CP~~ai~~~~--~~~~i~~~~---C~~Cg~C~~~CP~~ai~~~~~ 59 (106)
T 7fd1_A 2 FVVTDNCIKCK--YTDCVEVCPVDCFYEGP--NFLVIHPDE---CIDCALCEPECPAQAIFSEDE 59 (106)
T ss_dssp EEECGGGTTTC--CCHHHHHCTTCCEEECS--SCEEECTTT---CCCCCTTGGGCTTCCEEEGGG
T ss_pred eECccccCCcc--CcHHHHHcCccceEcCC--CcEEECccc---CCChhhhHHhCCChhhhcccc
Confidence 46677898865 1 35555553 344422 111111000 000113478999999999764
No 50
>1qqr_A Streptokinase domain B; non-proteolytic, plasminogen activation, fibrinolysis, hydrolase activator; 2.30A {Streptococcus dysgalactiae subsp} SCOP: d.15.5.1 PDB: 1c4p_A
Probab=32.19 E-value=16 Score=28.32 Aligned_cols=32 Identities=19% Similarity=0.293 Sum_probs=29.3
Q ss_pred chhhhhCCCCCCCHHHHHHHHHHHHHhhCCCC
Q 024836 62 SAYAILGVEPSCSAAELKAAFRAKVKQYHPDV 93 (262)
Q Consensus 62 ~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~ 93 (262)
-++..|.|....+.+|++++=..+..++|||-
T Consensus 33 ~~l~~k~ig~~Its~eL~~~AqeiL~q~hp~Y 64 (138)
T 1qqr_A 33 KLLKTLAIGDTITSQELLAQAQSILNKNHPGY 64 (138)
T ss_dssp EEEEEECTTCEEEHHHHHHHHHHHHHHHSTTE
T ss_pred hhhcccccCcccCHHHHHHHHHHHHHhcCCCc
Confidence 46888999999999999999999999999985
No 51
>3or1_A Sulfite reductase alpha; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_A* 2v4j_A* 2xsj_A*
Probab=31.93 E-value=19 Score=33.53 Aligned_cols=16 Identities=38% Similarity=0.955 Sum_probs=13.9
Q ss_pred HHHhhcCCccceEEeC
Q 024836 188 QLAVGQCPRSCIHYVT 203 (262)
Q Consensus 188 q~A~~~CP~~~I~~v~ 203 (262)
.+.++.||+.||.|..
T Consensus 278 ~~vv~~CPt~ai~~~~ 293 (437)
T 3or1_A 278 AEVVGLCPTGCMTYES 293 (437)
T ss_dssp HHTTTTCTTCCEEEET
T ss_pred hhhhccCcHHheeecC
Confidence 5678999999999964
No 52
>1bc6_A 7-Fe ferredoxin; electron transport, iron-sulfur; NMR {Bacillus schlegelii} SCOP: d.58.1.2 PDB: 1bd6_A 1bqx_A 1bwe_A
Probab=30.83 E-value=26 Score=23.31 Aligned_cols=67 Identities=16% Similarity=0.132 Sum_probs=35.1
Q ss_pred hhccccccCCCCCCCCCCCCC-ceeeecCCCccccccCCCCchhHHHHHhhcCCccceEEeCcchhhhHHHHHH
Q 024836 143 VNEVLCVGKGCPYSCVKTAPN-AFSYSSSTGTARAISQGHGQDYRVQLAVGQCPRSCIHYVTPSQRIILEELLE 215 (262)
Q Consensus 143 v~~~~c~G~Gc~~~c~~~~p~-~F~~~~~~G~ar~~~q~~~~~~~vq~A~~~CP~~~I~~v~~~~~~~l~~~l~ 215 (262)
++...|+|++| ..|+..+|. .+.+.+ +.... ... .-..-..-+..||.+||.+.......+++.+++
T Consensus 3 i~~~~C~~c~C-~~C~~~Cp~~ai~~~~--~~~~~-~~~--~C~~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~ 70 (77)
T 1bc6_A 3 VITEPCIGTKD-ASCVEVCPVDCIHEGE--DQYYI-DPD--VCIDCGACEAVCPVSAIYHEDFVPEEWKSYIQK 70 (77)
T ss_dssp ECCSTTTTCCC-CSSTTTCTTCCEEECS--SSEEE-CTT--TCCSCCSHHHHSGGGSSEETTTSCHHHHHHHHH
T ss_pred EeCccCCCCCc-chhHHhcccccEEeCC--CcEEE-Ccc--cCcCccCCHhhcCccceEecCCCHHHHHHHHHH
Confidence 55677888322 178888885 345432 21111 110 000011236689999999876554444555543
No 53
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=29.06 E-value=89 Score=21.10 Aligned_cols=40 Identities=18% Similarity=0.301 Sum_probs=30.6
Q ss_pred HHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHH
Q 024836 79 KAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEII 123 (262)
Q Consensus 79 K~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Y 123 (262)
.+.+|..++.-||+.. ..+..+.|.+.|..|++.++....
T Consensus 18 ~~~~r~~~~~~~p~~~-----~~eisk~lg~~Wk~ls~~eK~~y~ 57 (83)
T 3f27_D 18 AKDERKRLAQQNPDLH-----NAELSKMLGKSWKALTLAEKRPFV 57 (83)
T ss_dssp HHHHHHHHHHHCSSSC-----HHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHH
Confidence 5677888888899864 346778899999999977665443
No 54
>3or1_B Sulfite reductase beta; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_B* 2v4j_B* 2xsj_B*
Probab=27.80 E-value=38 Score=30.66 Aligned_cols=48 Identities=17% Similarity=0.320 Sum_probs=26.8
Q ss_pred CCCCCCCCCCCCCceeeecCCCccccccCCCCchh-----HHHHHhhcCCccceEEe
Q 024836 151 KGCPYSCVKTAPNAFSYSSSTGTARAISQGHGQDY-----RVQLAVGQCPRSCIHYV 202 (262)
Q Consensus 151 ~Gc~~~c~~~~p~~F~~~~~~G~ar~~~q~~~~~~-----~vq~A~~~CP~~~I~~v 202 (262)
.|||.+|+...-.-+++.+.. +. ....+.+. .+...+..||+.||.+.
T Consensus 187 sGCpn~C~~~~~~Dig~vg~~---r~-~p~id~e~~~~~Ce~~~cv~~CPt~AI~~~ 239 (386)
T 3or1_B 187 ACCINMCGAVHCSDIGLVGIH---RK-PPMIDHENLAELCEIPLAVAACPTAAVKPI 239 (386)
T ss_dssp ESSTTCCSSGGGSSEEEEEEC---CS-CCCCCTTTHHHHCCHHHHHHHCTTCCEEEE
T ss_pred ccCcccccccccccccccccc---cc-cceechhhhcccccchhhhhhCchhhcccc
Confidence 368888877654444443221 11 01111111 13567899999999985
No 55
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=27.38 E-value=1.4e+02 Score=20.02 Aligned_cols=49 Identities=14% Similarity=0.306 Sum_probs=35.1
Q ss_pred ccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHH
Q 024836 60 TSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIE 124 (262)
Q Consensus 60 ~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd 124 (262)
..+.|-++ .+.+|..++.-||+.... +..+.|.+.|..|++.++....+
T Consensus 11 P~~af~lf-----------~~~~r~~~~~~~p~~~~~-----eisk~lg~~Wk~ls~~eK~~y~~ 59 (82)
T 1wz6_A 11 PMNAFLLF-----------CKRHRSLVRQEHPRLDNR-----GATKILADWWAVLDPKEKQKYTD 59 (82)
T ss_dssp CCCHHHHH-----------HHHHHHHHHHHCSSSCTT-----HHHHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCHHHHH-----------HHHHHHHHHHHCCCCCHH-----HHHHHHHHHHhhCCHHHHHHHHH
Confidence 34567666 567778888889986543 56788999999999776654433
No 56
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=26.39 E-value=68 Score=20.86 Aligned_cols=40 Identities=18% Similarity=0.301 Sum_probs=30.5
Q ss_pred HHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHH
Q 024836 79 KAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEII 123 (262)
Q Consensus 79 K~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Y 123 (262)
.+.+|...+.-||+.. ..+..+.|.+.+..|++.++....
T Consensus 14 ~~~~r~~~~~~~p~~~-----~~eisk~lg~~Wk~ls~~eK~~y~ 53 (71)
T 4a3n_A 14 AKDERKRLAQQNPDLH-----NAELSKMLGKSWKALTLAEKRPFV 53 (71)
T ss_dssp HHHHHHHHHTTCTTSC-----HHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHH
Confidence 5677888888899864 346778899999999877665443
No 57
>1jnr_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.1.5 PDB: 1jnz_B* 2fja_B* 2fjb_B* 2fjd_B* 2fje_B*
Probab=26.21 E-value=8.9 Score=29.97 Aligned_cols=64 Identities=20% Similarity=0.253 Sum_probs=34.9
Q ss_pred hhhhccccccCC--CCCCCCCCCCC-ceeeecCCCccccccCCCCchhHHHHHhhcCCccceEEeCcch
Q 024836 141 VFVNEVLCVGKG--CPYSCVKTAPN-AFSYSSSTGTARAISQGHGQDYRVQLAVGQCPRSCIHYVTPSQ 206 (262)
Q Consensus 141 iFv~~~~c~G~G--c~~~c~~~~p~-~F~~~~~~G~ar~~~q~~~~~~~vq~A~~~CP~~~I~~v~~~~ 206 (262)
++++...|+||| |-..|+..+|. .+.++...+.+..... +.-..-..-+..||.+||.+....+
T Consensus 3 ~~vd~~~C~~C~~~~~~~C~~~CP~~ai~~~~~~~~~~~id~--~~C~~Cg~Cv~~CP~~AI~~~~~~~ 69 (150)
T 1jnr_B 3 SFVNPEKCDGCKALERTACEYICPNDLMTLDKEKMKAYNREP--DMCWECYSCVKMCPQGAIDVRGYVD 69 (150)
T ss_dssp EEECTTTCCSCCSSSSCHHHHHCTTSCEEEETTTTEEEESCG--GGCCCCCHHHHHCTTCCEEECCCTT
T ss_pred eEECcccCCCCCCcccccchhhcCccCeEEecCCceeeeeCc--ccCcCHhHHHHhCCccceEecCcch
Confidence 457788899866 11246666664 4566544322211110 0000112457889999999876543
No 58
>1kqf_B FDH-N beta S, formate dehydrogenase, nitrate-inducible, iron-SU subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: d.58.1.5 f.23.22.1 PDB: 1kqg_B*
Probab=26.07 E-value=30 Score=30.02 Aligned_cols=61 Identities=23% Similarity=0.337 Sum_probs=35.3
Q ss_pred hhhhccccccCCCCCCCCCCCCC-ceeeecCCCccccccCCCCchhHH-----HHHhhcCCccceEEeCcchh
Q 024836 141 VFVNEVLCVGKGCPYSCVKTAPN-AFSYSSSTGTARAISQGHGQDYRV-----QLAVGQCPRSCIHYVTPSQR 207 (262)
Q Consensus 141 iFv~~~~c~G~Gc~~~c~~~~p~-~F~~~~~~G~ar~~~q~~~~~~~v-----q~A~~~CP~~~I~~v~~~~~ 207 (262)
+.++...|+||| .|+..+|. .+.+....+.... -. .-..++ ..-+..||.+||.+.+..+.
T Consensus 126 v~id~~~CigCg---~C~~~CP~~ai~~~~~~~~~~k-C~--~C~~r~~~g~~p~Cv~~CP~~Ai~~~~~~~~ 192 (294)
T 1kqf_B 126 VDFQSENCIGCG---YCIAGCPFNIPRLNKEDNRVYK-CT--LCVDRVSVGQEPACVKTCPTGAIHFGTKKEM 192 (294)
T ss_dssp EEECGGGCCCCC---HHHHHCTTCCCEEETTTTEEEC-CC--TTHHHHTTTCCCHHHHHCTTSCEEEEEHHHH
T ss_pred eEeCcccCCCcc---hhhhcCCCCCcEecCCCCCeee-CC--CccchhhcCccHHHHHhCCcCcEEEecHHHH
Confidence 457888999987 56566664 4455443332210 00 011111 15688999999999876543
No 59
>2vpz_B NRFC protein; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_B* 2vpw_B* 2vpy_B*
Probab=25.21 E-value=15 Score=30.01 Aligned_cols=16 Identities=25% Similarity=0.567 Sum_probs=12.5
Q ss_pred HHhhcCCccceEEeCc
Q 024836 189 LAVGQCPRSCIHYVTP 204 (262)
Q Consensus 189 ~A~~~CP~~~I~~v~~ 204 (262)
.-+..||+.||.+...
T Consensus 130 ~Cv~~CP~~Ai~~g~~ 145 (195)
T 2vpz_B 130 ACVETCPTYCRTFGDL 145 (195)
T ss_dssp HHHHSCTTCCEEEEET
T ss_pred hhHhhCCcccEEEecc
Confidence 4578899999998643
No 60
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=24.96 E-value=1.1e+02 Score=20.25 Aligned_cols=40 Identities=15% Similarity=0.277 Sum_probs=29.1
Q ss_pred HHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHH
Q 024836 79 KAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEII 123 (262)
Q Consensus 79 K~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Y 123 (262)
.+.+|...+.-||+.... +..+.|.+.+..|++.++....
T Consensus 16 ~~~~r~~~~~~~p~~~~~-----eisk~lg~~Wk~ls~~eK~~y~ 55 (76)
T 1hry_A 16 SRDQRRKMALENPRMRNS-----EISKQLGYQWKMLTEAEKWPFF 55 (76)
T ss_dssp HHHHHHHHHHHCSCCSSS-----HHHHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHHCcCCCHH-----HHHHHHHhHHHhCCHHHHHHHH
Confidence 566777778889987543 5568899999999877665433
No 61
>2cqn_A Formin-binding protein 3; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=23.97 E-value=1.6e+02 Score=20.15 Aligned_cols=52 Identities=25% Similarity=0.280 Sum_probs=36.4
Q ss_pred CCHHHHHHHHHHHHHhhCCCCCCCCc--hHHHHHHHHHHHHHHhcChh-HHHHHHh
Q 024836 73 CSAAELKAAFRAKVKQYHPDVNRDGR--DSDALIRRIIQAYEILTEYS-RLEIIER 125 (262)
Q Consensus 73 as~~eIK~ayr~l~~~~HPD~~~~~~--~a~~~f~~i~~Ay~~L~d~~-~R~~Yd~ 125 (262)
.-...++.+|+.+.+...|....... .+..+|.... +|..+.++. ++..|+.
T Consensus 6 ~r~rrl~~~F~~mLk~~~p~I~~~s~We~vr~~~e~~~-~fkav~~E~eR~~lFee 60 (77)
T 2cqn_A 6 SGMKRKESAFKSMLKQAAPPIELDAVWEDIRERFVKEP-AFEDITLESERKRIFKD 60 (77)
T ss_dssp CSHHHHHHHHHHHHHTCSSCCCTTCCHHHHHHHHTTSH-HHHTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHccCH-HHHhcCCHHHHHHHHHH
Confidence 45677899999999998888776653 3445554444 899997764 5555655
No 62
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=23.53 E-value=39 Score=24.47 Aligned_cols=22 Identities=18% Similarity=0.397 Sum_probs=18.5
Q ss_pred CCCHHHHHHHHHHHHHhhCCCC
Q 024836 72 SCSAAELKAAFRAKVKQYHPDV 93 (262)
Q Consensus 72 ~as~~eIK~ayr~l~~~~HPD~ 93 (262)
+-++.+|+.+|++|++.+|--.
T Consensus 67 Nks~nqV~~RFq~Lm~Lf~~~~ 88 (95)
T 1ug2_A 67 NKTPVEVSHRFRELMQLFHTAC 88 (95)
T ss_dssp SCCHHHHHHHHHHHHHHHHHCS
T ss_pred cCCHHHHHHHHHHHHHHHHHHh
Confidence 4588999999999999997554
No 63
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=22.46 E-value=2e+02 Score=19.88 Aligned_cols=48 Identities=13% Similarity=0.280 Sum_probs=35.3
Q ss_pred cchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHH
Q 024836 61 SSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIE 124 (262)
Q Consensus 61 ~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd 124 (262)
.+.|-++ .+.+|...+.-||+.. ..+..+.|.+.|..|++.++....+
T Consensus 12 ~~af~lF-----------~~~~r~~~~~~~p~~~-----~~eisk~lg~~Wk~ls~eeK~~Y~~ 59 (92)
T 2crj_A 12 VTGYVRF-----------LNERREQIRTRHPDLP-----FPEITKMLGAEWSKLQPAEKQRYLD 59 (92)
T ss_dssp CCHHHHH-----------HHHHHHHHHHHCTTCC-----HHHHHHHHHHHHHTCCTTHHHHHHH
T ss_pred CCHHHHH-----------HHHHHHHHHHHCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4567666 5667777788899863 3567889999999999887755433
No 64
>1h98_A Ferredoxin; electron transport, thermophilic, iron-sulfur, azotobacter, hydrogen bonds, stability, high resolution; 1.64A {Thermus aquaticus} SCOP: d.58.1.2
Probab=20.89 E-value=48 Score=21.98 Aligned_cols=64 Identities=17% Similarity=0.179 Sum_probs=33.1
Q ss_pred hhhcccccc--CCCCCCCCCCCCC-ceeeecCCCccccccCCCCchhHHHHHhhcCCccceEEeCcchhhhHHHH
Q 024836 142 FVNEVLCVG--KGCPYSCVKTAPN-AFSYSSSTGTARAISQGHGQDYRVQLAVGQCPRSCIHYVTPSQRIILEEL 213 (262)
Q Consensus 142 Fv~~~~c~G--~Gc~~~c~~~~p~-~F~~~~~~G~ar~~~q~~~~~~~vq~A~~~CP~~~I~~v~~~~~~~l~~~ 213 (262)
+++...|+| +| .|+..+|. .+.+.+ +........ -..-..-+..||.+||.+.......+++.+
T Consensus 2 ~i~~~~C~~c~C~---~C~~~CP~~ai~~~~--~~~~~~~~~---C~~C~~C~~~CP~~Ai~~~~~~~~~~~~~~ 68 (78)
T 1h98_A 2 HVICEPCIGVKDQ---SCVEVCPVECIYDGG--DQFYIHPEE---CIDCGACVPACPVNAIYPEEDVPEQWKSYI 68 (78)
T ss_dssp EEECGGGTTTCCC---HHHHHCTTCCEEECS--SSEEECTTT---CCCCCTHHHHCTTCCEEEGGGCCGGGTHHH
T ss_pred EEEchhCCCCCcC---hhhhhcCccceEcCC--CEEEECccc---CCcHhHHHHhCCccceEecccChHHHHHHH
Confidence 356678888 55 56666665 455532 211111100 000113467899999998654433334433
Done!