BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 024838
         (262 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3IBY|A Chain A, Structure Of Cytosolic Domain Of L. Pneumophila Feob
 pdb|3IBY|B Chain B, Structure Of Cytosolic Domain Of L. Pneumophila Feob
 pdb|3IBY|C Chain C, Structure Of Cytosolic Domain Of L. Pneumophila Feob
 pdb|3IBY|D Chain D, Structure Of Cytosolic Domain Of L. Pneumophila Feob
          Length = 256

 Score = 28.9 bits (63), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 2/51 (3%)

Query: 25  VVFRLEIVDVRSPRGIAKILGTLASLVG--VMVIAFYKGPAVPSLKGAPIH 73
           VV  L ++D+   RGI+     L SL+G  V+ I  +K   +P+L+ + +H
Sbjct: 113 VVVALNMMDIAEHRGISIDTEKLESLLGCSVIPIQAHKNIGIPALQQSLLH 163


>pdb|3INU|H Chain H, Crystal Structure Of An Unbound Kz52 Neutralizing
           Anti-Ebolavirus Antibody.
 pdb|3INU|M Chain M, Crystal Structure Of An Unbound Kz52 Neutralizing
           Anti-Ebolavirus Antibody
          Length = 226

 Score = 28.9 bits (63), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 106 FTLKKYPAKLSISAWMNCIGAAQSAVYTIIVQ-PKAAAWSTTSGIDLW 152
           FT+ +  A+ S+   MN + A  +AVY  + + P+A  +S     D+W
Sbjct: 68  FTISRDNAENSLYLQMNSLRAEDTAVYYCVREGPRATGYSMADVFDIW 115


>pdb|1I9C|A Chain A, Glutamate Mutase From Clostridium Cochlearium: Complex
           With Adenosylcobalamin And Substrate
 pdb|1I9C|C Chain C, Glutamate Mutase From Clostridium Cochlearium: Complex
           With Adenosylcobalamin And Substrate
          Length = 137

 Score = 27.7 bits (60), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 19/30 (63%)

Query: 72  IHLGTNSVHENWLKGSILTVASCILWSSFY 101
           +++G  S  EN++K +I T A  IL SS Y
Sbjct: 35  VNIGVLSPQENFIKAAIETKADAILVSSLY 64


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.136    0.435 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,984,674
Number of Sequences: 62578
Number of extensions: 249622
Number of successful extensions: 706
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 705
Number of HSP's gapped (non-prelim): 6
length of query: 262
length of database: 14,973,337
effective HSP length: 97
effective length of query: 165
effective length of database: 8,903,271
effective search space: 1469039715
effective search space used: 1469039715
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)