Query 024838
Match_columns 262
No_of_seqs 116 out of 1723
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 07:47:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024838.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024838hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00411 nodulin MtN21 family 100.0 2E-30 4.2E-35 226.0 22.0 230 1-231 99-335 (358)
2 PRK11453 O-acetylserine/cystei 99.9 5.1E-26 1.1E-30 195.2 18.7 204 2-227 81-290 (299)
3 PRK11689 aromatic amino acid e 99.9 3.4E-25 7.3E-30 189.7 15.8 202 3-226 88-289 (295)
4 TIGR00950 2A78 Carboxylate/Ami 99.9 7.4E-25 1.6E-29 184.3 17.1 191 1-219 68-259 (260)
5 PRK11272 putative DMT superfam 99.9 1.1E-24 2.5E-29 186.2 17.9 197 2-227 92-288 (292)
6 TIGR00817 tpt Tpt phosphate/ph 99.9 3.4E-25 7.3E-30 190.4 13.8 203 1-229 86-298 (302)
7 PF06027 DUF914: Eukaryotic pr 99.9 8.3E-24 1.8E-28 181.1 19.3 212 1-231 100-312 (334)
8 TIGR03340 phn_DUF6 phosphonate 99.9 6.7E-23 1.5E-27 174.4 16.7 193 1-221 84-280 (281)
9 PRK10532 threonine and homoser 99.9 1.4E-22 3.1E-27 173.3 17.4 196 1-230 92-287 (293)
10 PRK15430 putative chlorampheni 99.9 3.3E-22 7.2E-27 171.3 17.0 189 1-223 94-284 (296)
11 PTZ00343 triose or hexose phos 99.9 2.9E-22 6.2E-27 175.2 15.4 199 1-225 135-349 (350)
12 COG0697 RhaT Permeases of the 99.8 1.9E-19 4.2E-24 153.1 17.7 196 1-225 91-288 (292)
13 KOG4510 Permease of the drug/m 99.8 1.2E-20 2.6E-25 152.2 2.0 210 1-227 118-328 (346)
14 KOG2765 Predicted membrane pro 99.8 1.1E-18 2.4E-23 147.1 12.0 211 1-228 180-394 (416)
15 TIGR00688 rarD rarD protein. T 99.8 1.8E-17 4E-22 139.1 15.1 165 1-199 91-255 (256)
16 PF08449 UAA: UAA transporter 99.8 4.6E-17 1E-21 139.9 16.6 213 1-229 85-302 (303)
17 COG2510 Predicted membrane pro 99.7 6E-16 1.3E-20 111.6 13.7 136 86-224 4-139 (140)
18 COG2962 RarD Predicted permeas 99.7 1.5E-15 3.2E-20 125.0 16.9 191 3-226 95-285 (293)
19 KOG1580 UDP-galactose transpor 99.7 2.1E-15 4.5E-20 119.9 14.8 210 1-229 106-319 (337)
20 COG5006 rhtA Threonine/homoser 99.6 6.8E-15 1.5E-19 118.3 14.5 193 3-228 94-286 (292)
21 TIGR00776 RhaT RhaT L-rhamnose 99.6 8E-15 1.7E-19 125.2 14.3 199 2-224 81-288 (290)
22 PF00892 EamA: EamA-like trans 99.6 5.1E-15 1.1E-19 110.2 8.8 125 95-223 1-125 (126)
23 KOG1441 Glucose-6-phosphate/ph 99.6 2.7E-15 5.8E-20 127.4 4.2 204 1-231 104-314 (316)
24 KOG2766 Predicted membrane pro 99.5 3.4E-14 7.4E-19 114.4 5.5 205 2-231 100-306 (336)
25 PF04142 Nuc_sug_transp: Nucle 99.4 3.5E-12 7.7E-17 105.8 14.8 204 1-214 38-243 (244)
26 KOG1443 Predicted integral mem 99.4 8.2E-12 1.8E-16 103.2 12.1 198 1-224 105-315 (349)
27 KOG1444 Nucleotide-sugar trans 99.3 8E-11 1.7E-15 98.5 15.8 205 1-231 98-307 (314)
28 PRK15430 putative chlorampheni 99.3 2.7E-11 5.8E-16 103.9 12.9 138 82-223 5-144 (296)
29 KOG2234 Predicted UDP-galactos 99.3 3.2E-10 6.9E-15 96.3 17.9 209 2-229 114-327 (345)
30 PF03151 TPT: Triose-phosphate 99.3 7.7E-11 1.7E-15 91.0 12.3 138 86-224 1-153 (153)
31 TIGR00688 rarD rarD protein. T 99.3 6.7E-11 1.5E-15 99.3 12.4 136 85-223 2-141 (256)
32 KOG1583 UDP-N-acetylglucosamin 99.3 1.3E-10 2.8E-15 94.9 13.3 202 11-223 96-313 (330)
33 COG5070 VRG4 Nucleotide-sugar 99.3 1E-11 2.2E-16 98.4 6.1 212 1-231 89-303 (309)
34 TIGR03340 phn_DUF6 phosphonate 99.3 1.9E-10 4.1E-15 97.9 14.3 133 87-224 3-135 (281)
35 KOG1581 UDP-galactose transpor 99.1 3E-10 6.5E-15 94.1 10.0 211 1-228 104-317 (327)
36 PRK02971 4-amino-4-deoxy-L-ara 99.1 1.7E-09 3.6E-14 80.8 11.6 122 85-227 2-125 (129)
37 PLN00411 nodulin MtN21 family 99.1 1.5E-09 3.3E-14 95.1 13.0 139 84-224 12-156 (358)
38 KOG3912 Predicted integral mem 99.1 8.9E-10 1.9E-14 90.3 9.0 205 1-223 107-333 (372)
39 KOG1442 GDP-fucose transporter 99.1 8.5E-11 1.8E-15 95.9 2.8 209 1-232 123-335 (347)
40 PRK11272 putative DMT superfam 99.0 7.6E-09 1.6E-13 88.6 13.3 133 85-224 8-141 (292)
41 TIGR00950 2A78 Carboxylate/Ami 99.0 4.7E-09 1E-13 88.1 11.6 119 97-224 1-119 (260)
42 KOG4314 Predicted carbohydrate 99.0 3.8E-09 8.2E-14 82.4 9.2 201 1-226 74-278 (290)
43 PF13536 EmrE: Multidrug resis 99.0 2.9E-09 6.3E-14 78.0 8.1 108 119-227 2-109 (113)
44 KOG1582 UDP-galactose transpor 99.0 7.8E-09 1.7E-13 84.5 10.9 197 9-227 135-335 (367)
45 TIGR00803 nst UDP-galactose tr 99.0 3.6E-09 7.8E-14 87.0 9.1 205 5-222 3-222 (222)
46 PRK11453 O-acetylserine/cystei 98.9 1.5E-08 3.3E-13 87.0 13.0 127 87-225 6-133 (299)
47 PRK11689 aromatic amino acid e 98.9 2.6E-08 5.7E-13 85.4 12.9 131 85-225 4-138 (295)
48 TIGR00817 tpt Tpt phosphate/ph 98.8 5.4E-08 1.2E-12 83.7 12.3 121 99-223 16-136 (302)
49 PRK15051 4-amino-4-deoxy-L-ara 98.7 8.2E-08 1.8E-12 69.9 8.4 69 156-224 41-109 (111)
50 PF06800 Sugar_transport: Suga 98.7 1E-06 2.2E-11 73.4 15.6 185 14-221 80-268 (269)
51 PTZ00343 triose or hexose phos 98.7 5E-07 1.1E-11 79.3 14.1 126 98-225 62-187 (350)
52 COG2962 RarD Predicted permeas 98.7 2.6E-07 5.6E-12 76.7 10.3 140 84-226 6-146 (293)
53 TIGR00776 RhaT RhaT L-rhamnose 98.6 1.1E-06 2.4E-11 75.2 12.3 132 86-226 2-138 (290)
54 COG0697 RhaT Permeases of the 98.5 2.6E-06 5.6E-11 72.2 14.0 141 84-228 6-147 (292)
55 PF05653 Mg_trans_NIPA: Magnes 98.5 8E-07 1.7E-11 76.1 9.9 210 2-227 72-295 (300)
56 PRK10532 threonine and homoser 98.4 3.9E-06 8.4E-11 71.9 12.3 127 84-224 11-137 (293)
57 PF06027 DUF914: Eukaryotic pr 98.3 2.4E-05 5.1E-10 67.8 14.3 144 83-228 11-155 (334)
58 PRK10452 multidrug efflux syst 98.2 1.8E-05 4E-10 58.1 9.8 69 158-226 36-105 (120)
59 KOG4510 Permease of the drug/m 98.2 6.2E-07 1.3E-11 73.4 2.1 137 82-226 35-171 (346)
60 PF13536 EmrE: Multidrug resis 98.2 1.8E-06 3.9E-11 63.1 4.1 50 2-58 57-106 (113)
61 PF08449 UAA: UAA transporter 98.2 4.2E-05 9.1E-10 65.9 13.0 130 96-231 11-143 (303)
62 PRK13499 rhamnose-proton sympo 98.1 0.00054 1.2E-08 59.5 18.8 213 3-225 96-342 (345)
63 KOG2922 Uncharacterized conser 98.0 2.2E-05 4.7E-10 66.2 7.2 208 3-229 87-311 (335)
64 PF04657 DUF606: Protein of un 98.0 0.00015 3.2E-09 54.9 10.5 132 86-221 2-138 (138)
65 PF00892 EamA: EamA-like trans 97.9 8.1E-06 1.8E-10 60.1 3.6 51 1-57 75-125 (126)
66 PRK09541 emrE multidrug efflux 97.9 7.6E-05 1.7E-09 54.0 8.5 67 159-225 37-104 (110)
67 PF05653 Mg_trans_NIPA: Magnes 97.8 0.00011 2.4E-09 63.0 9.1 117 82-223 4-121 (300)
68 PF06800 Sugar_transport: Suga 97.8 0.00045 9.7E-09 57.8 12.1 114 113-231 11-129 (269)
69 PRK10650 multidrug efflux syst 97.8 0.00033 7.1E-09 50.6 9.3 64 160-223 43-107 (109)
70 PRK15051 4-amino-4-deoxy-L-ara 97.8 2.9E-05 6.3E-10 56.5 3.9 51 1-57 58-108 (111)
71 PRK13499 rhamnose-proton sympo 97.7 0.00044 9.6E-09 60.1 10.2 141 83-226 5-155 (345)
72 COG3238 Uncharacterized protei 97.6 0.0011 2.4E-08 50.3 10.5 140 84-226 4-148 (150)
73 PRK11431 multidrug efflux syst 97.6 0.0007 1.5E-08 48.6 8.8 66 159-224 36-102 (105)
74 COG2076 EmrE Membrane transpor 97.6 0.00056 1.2E-08 48.7 7.8 65 161-225 39-104 (106)
75 PF04142 Nuc_sug_transp: Nucle 97.5 0.00032 7E-09 58.4 7.2 79 150-229 16-94 (244)
76 PF00893 Multi_Drug_Res: Small 97.5 0.00041 9E-09 48.7 6.6 56 160-215 37-93 (93)
77 COG2510 Predicted membrane pro 97.4 2.7E-05 5.9E-10 56.8 -0.6 50 2-57 89-138 (140)
78 PF07857 DUF1632: CEO family ( 97.2 0.0013 2.9E-08 54.7 6.8 132 86-229 1-139 (254)
79 KOG2234 Predicted UDP-galactos 97.1 0.032 7E-07 48.1 14.7 142 85-227 15-167 (345)
80 COG4975 GlcU Putative glucose 97.0 0.00041 9E-09 56.5 2.1 132 86-227 3-139 (288)
81 KOG1441 Glucose-6-phosphate/ph 96.7 0.0012 2.5E-08 56.8 3.0 125 99-226 31-157 (316)
82 PF10639 UPF0546: Uncharacteri 96.6 0.0071 1.5E-07 43.8 6.1 108 92-221 3-111 (113)
83 COG4975 GlcU Putative glucose 96.6 0.00021 4.6E-09 58.2 -2.4 197 2-224 81-285 (288)
84 PRK02971 4-amino-4-deoxy-L-ara 96.4 0.0035 7.7E-08 46.8 3.4 51 2-58 70-122 (129)
85 KOG2765 Predicted membrane pro 96.0 0.0075 1.6E-07 52.3 3.7 68 163-230 170-237 (416)
86 COG2076 EmrE Membrane transpor 95.9 0.012 2.7E-07 41.9 3.7 50 2-57 52-102 (106)
87 PRK09541 emrE multidrug efflux 95.8 0.014 3E-07 42.3 3.8 50 3-58 53-103 (110)
88 PRK10452 multidrug efflux syst 95.7 0.012 2.6E-07 43.3 3.4 51 2-58 52-103 (120)
89 KOG2922 Uncharacterized conser 95.5 0.008 1.7E-07 51.1 2.0 120 82-226 18-138 (335)
90 KOG1443 Predicted integral mem 95.4 0.12 2.6E-06 43.9 8.6 125 101-228 32-160 (349)
91 PF03151 TPT: Triose-phosphate 95.4 0.016 3.4E-07 44.3 3.2 49 1-55 102-150 (153)
92 PRK10650 multidrug efflux syst 95.4 0.023 5E-07 41.0 3.8 48 3-56 58-106 (109)
93 PRK11431 multidrug efflux syst 95.0 0.03 6.6E-07 40.1 3.5 47 4-56 53-100 (105)
94 KOG1580 UDP-galactose transpor 94.9 0.054 1.2E-06 44.2 5.0 137 89-231 17-164 (337)
95 COG5006 rhtA Threonine/homoser 94.7 1.3 2.9E-05 36.7 12.5 103 86-196 13-115 (292)
96 KOG4314 Predicted carbohydrate 94.5 0.029 6.3E-07 44.5 2.4 63 165-227 66-128 (290)
97 PF06379 RhaT: L-rhamnose-prot 94.4 0.27 5.9E-06 42.5 8.3 147 82-231 4-160 (344)
98 KOG1444 Nucleotide-sugar trans 94.3 0.77 1.7E-05 39.3 10.8 133 87-223 14-148 (314)
99 PRK02237 hypothetical protein; 93.4 0.31 6.8E-06 34.7 5.7 46 181-226 62-107 (109)
100 PF00893 Multi_Drug_Res: Small 93.2 0.098 2.1E-06 36.6 3.0 41 2-48 51-92 (93)
101 PF07168 Ureide_permease: Urei 93.0 0.11 2.4E-06 44.0 3.5 130 91-222 2-144 (336)
102 KOG1442 GDP-fucose transporter 92.3 0.24 5.3E-06 41.4 4.6 110 113-226 60-176 (347)
103 KOG1581 UDP-galactose transpor 91.7 5.7 0.00012 34.0 12.0 129 95-229 24-160 (327)
104 PF02694 UPF0060: Uncharacteri 90.6 0.39 8.4E-06 34.1 3.5 44 183-226 62-105 (107)
105 PF06379 RhaT: L-rhamnose-prot 90.0 12 0.00027 32.5 15.9 203 14-225 108-341 (344)
106 KOG3912 Predicted integral mem 89.4 0.4 8.6E-06 40.3 3.3 64 161-224 95-158 (372)
107 KOG2766 Predicted membrane pro 89.1 0.12 2.5E-06 42.8 0.0 136 83-226 16-152 (336)
108 KOG4831 Unnamed protein [Funct 88.6 1.3 2.8E-05 31.4 4.9 58 165-222 65-123 (125)
109 COG1742 Uncharacterized conser 88.5 1.3 2.9E-05 31.3 4.8 46 181-226 61-106 (109)
110 PF04342 DUF486: Protein of un 87.8 0.67 1.4E-05 32.9 3.1 33 191-223 75-107 (108)
111 PF10639 UPF0546: Uncharacteri 87.4 0.2 4.4E-06 36.3 0.3 47 3-55 64-111 (113)
112 COG3169 Uncharacterized protei 86.8 1.6 3.5E-05 30.5 4.5 36 189-224 80-115 (116)
113 PF08507 COPI_assoc: COPI asso 86.8 1.2 2.6E-05 33.5 4.3 16 207-222 88-103 (136)
114 PF05977 MFS_3: Transmembrane 84.7 35 0.00075 31.9 14.1 19 183-201 351-369 (524)
115 COG2271 UhpC Sugar phosphate p 78.3 28 0.00062 31.5 10.0 128 94-232 74-213 (448)
116 TIGR02865 spore_II_E stage II 78.3 73 0.0016 31.4 16.3 44 7-56 11-54 (764)
117 COG5070 VRG4 Nucleotide-sugar 77.4 8.6 0.00019 31.5 6.0 60 170-229 86-145 (309)
118 PRK06638 NADH:ubiquinone oxido 73.7 45 0.00098 26.8 13.8 34 193-226 133-168 (198)
119 PF03547 Mem_trans: Membrane t 72.6 68 0.0015 28.3 14.9 20 151-170 62-81 (385)
120 PLN00028 nitrate transmembrane 70.6 48 0.001 30.3 10.1 15 209-223 417-431 (476)
121 PRK13108 prolipoprotein diacyl 70.1 18 0.0004 33.1 7.0 47 181-227 226-277 (460)
122 COG4657 RnfA Predicted NADH:ub 69.5 45 0.00098 25.8 7.8 49 84-132 131-184 (193)
123 PF15345 TMEM51: Transmembrane 67.3 3.8 8.2E-05 33.4 1.8 23 210-232 67-89 (233)
124 PF05297 Herpes_LMP1: Herpesvi 65.9 2 4.4E-05 36.1 0.1 59 163-221 119-181 (381)
125 PRK11010 ampG muropeptide tran 65.8 1.1E+02 0.0024 28.1 11.5 18 208-225 385-402 (491)
126 PF15102 TMEM154: TMEM154 prot 63.2 12 0.00026 28.4 3.7 21 211-231 68-88 (146)
127 KOG1583 UDP-N-acetylglucosamin 62.2 16 0.00035 31.0 4.6 135 86-231 7-144 (330)
128 PF05297 Herpes_LMP1: Herpesvi 60.3 2.9 6.3E-05 35.3 0.0 10 85-94 107-116 (381)
129 PF03348 Serinc: Serine incorp 59.7 1.4E+02 0.003 27.2 11.5 58 157-227 249-306 (429)
130 TIGR00892 2A0113 monocarboxyla 59.4 1.1E+02 0.0024 27.6 10.2 6 211-216 407-412 (455)
131 PF15048 OSTbeta: Organic solu 58.2 6.9 0.00015 28.7 1.7 27 197-223 25-55 (125)
132 PF06123 CreD: Inner membrane 56.0 1.6E+02 0.0035 26.8 12.4 28 84-111 350-377 (430)
133 PF09656 PGPGW: Putative trans 54.5 49 0.0011 20.4 4.8 45 42-110 5-49 (53)
134 COG3247 HdeD Uncharacterized c 53.6 1.1E+02 0.0024 24.3 14.0 42 181-222 130-175 (185)
135 COG3086 RseC Positive regulato 53.2 7.6 0.00016 29.3 1.2 23 177-199 73-95 (150)
136 PF15471 TMEM171: Transmembran 52.5 19 0.00041 30.2 3.5 18 206-223 161-178 (319)
137 PRK11902 ampG muropeptide tran 52.0 1.7E+02 0.0036 25.8 13.4 16 207-222 371-386 (402)
138 COG3965 Predicted Co/Zn/Cd cat 51.6 1.5E+02 0.0032 25.1 10.9 94 9-113 54-154 (314)
139 PF03616 Glt_symporter: Sodium 50.4 1.8E+02 0.004 25.8 11.2 16 26-41 20-35 (368)
140 TIGR00881 2A0104 phosphoglycer 50.1 1.6E+02 0.0035 25.0 12.2 18 94-111 40-57 (379)
141 PF10754 DUF2569: Protein of u 50.0 1.1E+02 0.0024 23.2 7.6 27 83-109 119-145 (149)
142 PF07857 DUF1632: CEO family ( 49.6 1.6E+02 0.0034 24.8 9.3 29 82-110 180-208 (254)
143 PF04342 DUF486: Protein of un 49.3 11 0.00023 26.9 1.4 30 20-55 76-105 (108)
144 PF10225 DUF2215: Uncharacteri 48.8 1.6E+02 0.0034 24.6 8.8 37 171-207 114-150 (249)
145 PRK15049 L-asparagine permease 48.3 2.3E+02 0.0049 26.2 10.5 9 28-36 243-251 (499)
146 PRK11715 inner membrane protei 48.1 2.2E+02 0.0048 26.0 12.0 28 84-111 356-383 (436)
147 KOG2533 Permease of the major 47.7 1.2E+02 0.0025 28.3 8.3 72 36-112 35-109 (495)
148 PRK10435 cadB lysine/cadaverin 46.4 2.2E+02 0.0048 25.6 10.0 79 151-231 351-430 (435)
149 PF08693 SKG6: Transmembrane a 46.2 22 0.00047 20.6 2.1 18 210-227 21-38 (40)
150 PRK02237 hypothetical protein; 45.2 26 0.00057 25.1 2.8 36 17-58 70-105 (109)
151 PRK05122 major facilitator sup 44.9 2.1E+02 0.0046 24.9 12.9 32 192-223 355-386 (399)
152 TIGR01167 LPXTG_anchor LPXTG-m 44.7 32 0.00069 18.5 2.7 19 205-223 11-29 (34)
153 TIGR00910 2A0307_GadC glutamat 44.7 2.6E+02 0.0057 25.9 12.6 20 27-46 216-235 (507)
154 PRK11715 inner membrane protei 43.9 2.6E+02 0.0056 25.6 10.7 49 82-134 303-351 (436)
155 TIGR00836 amt ammonium transpo 43.1 2.5E+02 0.0055 25.3 11.4 50 152-201 280-332 (403)
156 COG3086 RseC Positive regulato 42.7 60 0.0013 24.6 4.5 24 5-28 73-96 (150)
157 TIGR03644 marine_trans_1 proba 42.5 2.6E+02 0.0056 25.3 10.3 63 155-217 297-361 (404)
158 COG4232 Thiol:disulfide interc 42.5 1.4E+02 0.0031 28.1 7.8 44 14-57 185-229 (569)
159 PF06946 Phage_holin_5: Phage 41.0 1.2E+02 0.0027 21.1 5.9 56 169-224 21-80 (93)
160 PF12606 RELT: Tumour necrosis 40.7 40 0.00087 20.5 2.8 14 214-227 13-26 (50)
161 PF02694 UPF0060: Uncharacteri 40.2 25 0.00054 25.1 2.1 38 15-58 66-103 (107)
162 MTH00057 ND6 NADH dehydrogenas 39.0 2E+02 0.0042 22.8 11.4 34 193-226 132-167 (186)
163 PF04550 Phage_holin_2: Phage 38.9 1E+02 0.0022 21.2 4.8 63 25-109 23-85 (89)
164 PF06609 TRI12: Fungal trichot 38.0 3.7E+02 0.008 25.8 12.3 17 42-58 240-256 (599)
165 PF14851 FAM176: FAM176 family 37.8 68 0.0015 24.6 4.3 7 211-217 33-39 (153)
166 PRK10862 SoxR reducing system 36.4 77 0.0017 24.3 4.5 24 5-28 73-96 (154)
167 PF04246 RseC_MucC: Positive r 36.3 21 0.00046 26.5 1.4 20 180-199 69-88 (135)
168 PF11118 DUF2627: Protein of u 36.3 61 0.0013 21.6 3.3 24 209-232 44-71 (77)
169 TIGR03810 arg_ornith_anti argi 35.4 3.5E+02 0.0075 24.6 10.1 21 207-227 412-432 (468)
170 TIGR01998 PTS-II-BC-nag PTS sy 34.9 1.7E+02 0.0037 27.0 7.3 30 149-178 348-377 (476)
171 PRK10489 enterobactin exporter 34.6 3.2E+02 0.0069 24.0 13.0 17 208-224 382-398 (417)
172 TIGR00905 2A0302 transporter, 34.6 3.6E+02 0.0078 24.6 10.2 44 184-228 394-438 (473)
173 COG2211 MelB Na+/melibiose sym 34.5 3.8E+02 0.0082 24.8 12.0 115 5-135 46-168 (467)
174 KOG1623 Multitransmembrane pro 33.9 2.8E+02 0.0061 23.1 9.0 47 177-223 154-205 (243)
175 COG2814 AraJ Arabinose efflux 33.8 3.6E+02 0.0077 24.3 10.2 38 192-229 352-389 (394)
176 PF11044 TMEMspv1-c74-12: Plec 33.5 18 0.00039 21.2 0.5 15 206-220 4-18 (49)
177 PRK03893 putative sialic acid 33.4 3.6E+02 0.0079 24.3 14.3 9 103-111 330-338 (496)
178 PF04156 IncA: IncA protein; 32.7 1.5E+02 0.0032 23.3 5.9 16 43-58 13-28 (191)
179 TIGR02840 spore_YtaF putative 32.3 27 0.00059 28.2 1.5 45 179-223 34-80 (206)
180 PF11381 DUF3185: Protein of u 32.1 21 0.00045 22.6 0.6 16 43-58 2-17 (59)
181 PF01102 Glycophorin_A: Glycop 31.9 29 0.00062 25.6 1.4 9 210-218 75-83 (122)
182 COG3169 Uncharacterized protei 31.8 63 0.0014 22.8 2.9 31 20-56 83-113 (116)
183 PF13347 MFS_2: MFS/sugar tran 31.6 1.9E+02 0.0041 25.8 7.0 24 4-27 34-57 (428)
184 PRK10110 bifunctional PTS syst 31.4 1.5E+02 0.0032 27.9 6.3 30 149-178 395-424 (530)
185 PF05961 Chordopox_A13L: Chord 30.7 58 0.0013 21.1 2.5 16 208-223 6-21 (68)
186 TIGR01299 synapt_SV2 synaptic 30.6 5.4E+02 0.012 25.4 12.5 45 88-133 599-643 (742)
187 PF09930 DUF2162: Predicted tr 30.5 3.1E+02 0.0067 22.6 9.7 46 177-222 129-175 (224)
188 COG1971 Predicted membrane pro 29.9 52 0.0011 26.3 2.6 40 184-223 46-86 (190)
189 PRK11469 hypothetical protein; 29.0 29 0.00063 27.6 1.1 40 184-223 46-86 (188)
190 CHL00196 psbY photosystem II p 28.6 1.1E+02 0.0025 17.2 3.1 20 85-104 6-25 (36)
191 PRK05771 V-type ATP synthase s 27.7 5.6E+02 0.012 24.7 14.6 18 206-223 507-524 (646)
192 PF03595 SLAC1: Voltage-depend 27.7 3.9E+02 0.0085 22.9 12.4 77 43-134 7-91 (330)
193 PF11628 TCR_zetazeta: T-cell 27.1 98 0.0021 17.0 2.6 24 12-35 8-31 (33)
194 PF04246 RseC_MucC: Positive r 26.9 90 0.0019 23.1 3.4 24 5-28 66-89 (135)
195 PF06963 FPN1: Ferroportin1 (F 26.8 1.4E+02 0.003 27.2 5.2 71 150-223 294-367 (432)
196 PF11295 DUF3096: Protein of u 26.0 89 0.0019 17.9 2.4 33 189-221 1-33 (39)
197 KOG4831 Unnamed protein [Funct 25.9 26 0.00057 25.0 0.3 47 4-56 76-123 (125)
198 TIGR00893 2A0114 d-galactonate 25.7 4.1E+02 0.0089 22.4 12.4 13 99-111 44-56 (399)
199 TIGR02004 PTS-IIBC-malX PTS sy 25.2 1.8E+02 0.0039 27.3 5.7 30 149-178 386-415 (517)
200 PF06197 DUF998: Protein of un 25.1 3.2E+02 0.0069 20.9 12.3 19 117-135 71-89 (184)
201 PHA03049 IMV membrane protein; 25.1 78 0.0017 20.5 2.3 21 208-228 6-27 (68)
202 PF15099 PIRT: Phosphoinositid 25.0 24 0.00052 26.0 0.0 15 154-168 59-73 (129)
203 COG4854 Predicted membrane pro 24.9 1.4E+02 0.0029 21.7 3.7 51 42-111 74-124 (126)
204 PRK10655 potE putrescine trans 24.7 4.8E+02 0.01 23.4 8.4 37 188-224 390-426 (438)
205 PF15345 TMEM51: Transmembrane 24.6 1.1E+02 0.0023 25.2 3.6 20 208-227 10-29 (233)
206 PF07444 Ycf66_N: Ycf66 protei 24.4 49 0.0011 22.6 1.4 28 203-230 4-31 (84)
207 PF14991 MLANA: Protein melan- 24.3 21 0.00045 25.8 -0.4 14 210-223 29-42 (118)
208 PRK10255 PTS system N-acetyl g 24.2 95 0.0021 29.9 3.7 29 149-177 335-363 (648)
209 PF06123 CreD: Inner membrane 24.1 5.6E+02 0.012 23.4 11.4 49 82-134 297-345 (430)
210 PRK10862 SoxR reducing system 23.4 54 0.0012 25.2 1.7 18 181-198 77-94 (154)
211 PRK10473 multidrug efflux syst 23.3 4.9E+02 0.011 22.5 13.8 10 189-198 337-346 (392)
212 KOG1623 Multitransmembrane pro 21.9 2.3E+02 0.0049 23.6 5.1 45 82-127 125-169 (243)
213 COG3476 Tryptophan-rich sensor 21.9 3.4E+02 0.0075 21.0 5.7 59 164-222 63-122 (161)
214 PF10753 DUF2566: Protein of u 21.7 85 0.0018 19.5 1.9 26 11-36 7-32 (55)
215 TIGR00803 nst UDP-galactose tr 21.6 41 0.00089 27.2 0.8 41 184-224 10-50 (222)
216 TIGR02611 conserved hypothetic 21.4 3.2E+02 0.0068 20.1 5.1 44 43-110 30-73 (121)
217 PRK12437 prolipoprotein diacyl 21.3 69 0.0015 27.0 2.1 47 180-226 206-257 (269)
218 PRK09556 uhpT sugar phosphate 21.3 6.1E+02 0.013 22.8 12.2 42 92-134 72-113 (467)
219 TIGR02005 PTS-IIBC-alpha PTS s 21.2 4.5E+02 0.0097 24.7 7.4 26 153-178 386-411 (524)
220 TIGR00939 2a57 Equilibrative N 21.0 6.3E+02 0.014 23.0 8.9 22 90-111 51-72 (437)
221 KOG1330 Sugar transporter/spin 20.7 4E+02 0.0087 24.7 6.7 55 81-135 284-340 (493)
No 1
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.97 E-value=2e-30 Score=226.01 Aligned_cols=230 Identities=29% Similarity=0.646 Sum_probs=176.2
Q ss_pred CcccchhHHHHhhhchHHHHHHHHHHHhhhcccccCCCcchhhhhHHHHhHHHHHHHHhcCCCCCCCC--CC-C--ccc-
Q 024838 1 MKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLK--GA-P--IHL- 74 (262)
Q Consensus 1 l~~~s~~~a~~i~~~~pi~~~ll~~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~~l~~~~~~~~~~~~--~~-~--~~~- 74 (262)
++|+++++++++.++.|+++++++++++.|+++.++|.++.|++|++++++|++++..++++...... +. + ...
T Consensus 99 l~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~ 178 (358)
T PLN00411 99 IEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPPYLNFRQLSP 178 (358)
T ss_pred HhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCccccccccccccccccccc
Confidence 48999999999999999999999999976666666666666799999999999888764343210000 00 0 000
Q ss_pred CCCcccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHhcc-CcccccccchhhHHH
Q 024838 75 GTNSVHENWLKGSILTVASCILWSSFYIMQAFTLKKYPAKLSISAWMNCIGAAQSAVYTIIVQP-KAAAWSTTSGIDLWC 153 (262)
Q Consensus 75 ~~~~~~~~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~ 153 (262)
+......+...|++++++++++|+.|.+++|+..+++++.....+++..++.+...+..+..++ +...|.......+..
T Consensus 179 ~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 258 (358)
T PLN00411 179 PLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDITLIT 258 (358)
T ss_pred ccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchHHHH
Confidence 0011123345699999999999999999999999998666677777777777777666665544 223332222233455
Q ss_pred HHHHhhhhhhHHHHHHHHHHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhheecccCccc
Q 024838 154 IIYSGAVSSCLNLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGKEGDQH 231 (262)
Q Consensus 154 ~~~~gi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~~~~ 231 (262)
++|.+++ +.++|.+|++++++.||++++++.+++|+++++++++++||++++.+++|+++++.|+++..++++|+.+
T Consensus 259 i~y~~i~-t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~~~~~~ 335 (358)
T PLN00411 259 IVTMAII-TSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGKANEEK 335 (358)
T ss_pred HHHHHHH-HHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 7777875 5789999999999999999999999999999999999999999999999999999999999876665544
No 2
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.94 E-value=5.1e-26 Score=195.19 Aligned_cols=204 Identities=18% Similarity=0.242 Sum_probs=162.0
Q ss_pred cc-cchhHHHHhhhchHHHHHHHHHHHhhhcccccCCCcchhhhhHHHHhHHHHHHHHhcCCCCCCCCCCCcccCCCccc
Q 024838 2 KY-VHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVH 80 (262)
Q Consensus 2 ~~-~s~~~a~~i~~~~pi~~~ll~~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~~~ 80 (262)
+| .+++.++++.+++|+++.+++++++|||+++++ +++++++++|+.++.. +... ..
T Consensus 81 ~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~------~~~~~l~~~Gv~ll~~--~~~~--------------~~ 138 (299)
T PRK11453 81 NFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQ------LAGIALAIFGVLVLIE--DSLN--------------GQ 138 (299)
T ss_pred HhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHH------HHHHHHHHHhHHHhcc--ccCC--------------Cc
Confidence 45 478999999999999999999999999999998 9999999999888863 2110 11
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCC--hhHHHHHHHHHHHHHHHHHHHHhccCc---ccccccchhhHHHHH
Q 024838 81 ENWLKGSILTVASCILWSSFYIMQAFTLKKYPA--KLSISAWMNCIGAAQSAVYTIIVQPKA---AAWSTTSGIDLWCII 155 (262)
Q Consensus 81 ~~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 155 (262)
.....|+++++.++++|+.|.++.|+..++.++ ......+.+..+.+.........++.. ..+...+...|..++
T Consensus 139 ~~~~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 218 (299)
T PRK11453 139 HVAMLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLM 218 (299)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHH
Confidence 112469999999999999999999997766522 234445555555444443333333311 112223456799999
Q ss_pred HHhhhhhhHHHHHHHHHHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhheeccc
Q 024838 156 YSGAVSSCLNLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGKE 227 (262)
Q Consensus 156 ~~gi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~ 227 (262)
|++++++.++|.+|++++++.++.+++.+.+++|+++.+++++++||+++..+++|++++++|+++..+.++
T Consensus 219 ~l~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~~ 290 (299)
T PRK11453 219 YLAFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGLR 290 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcchh
Confidence 999999999999999999999999999999999999999999999999999999999999999999876654
No 3
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.93 E-value=3.4e-25 Score=189.73 Aligned_cols=202 Identities=16% Similarity=0.102 Sum_probs=153.7
Q ss_pred ccchhHHHHhhhchHHHHHHHHHHHhhhcccccCCCcchhhhhHHHHhHHHHHHHHhcCCCCCCCCCCCcccCCCcccch
Q 024838 3 YVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVHEN 82 (262)
Q Consensus 3 ~~s~~~a~~i~~~~pi~~~ll~~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (262)
++++++++++.+++|+++++++++++|||+++++ +.|++++++|++++.. +++.. +.. +..+ +...
T Consensus 88 ~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~------~~g~~l~~~Gv~li~~-~~~~~-~~~----~~~~--~~~~ 153 (295)
T PRK11689 88 RRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLL------IPGLLLALAGVAWVLG-GDNGL-SLA----ELIN--NIAS 153 (295)
T ss_pred cccchHHHHHHHHhHHHHHHHHHHHhcCCccHHH------HHHHHHHHHhHhheec-CCccc-hhh----hhhh--cccc
Confidence 4677888999999999999999999999999888 9999999999988863 11100 000 0000 0111
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHhccCcccccccchhhHHHHHHHhhhhh
Q 024838 83 WLKGSILTVASCILWSSFYIMQAFTLKKYPAKLSISAWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAVSS 162 (262)
Q Consensus 83 ~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~ 162 (262)
...|++++++++++||.|.++.||..++. ++..... ..+.+.+.+.... ++.. . ...+...|..+++.++ ++
T Consensus 154 ~~~G~~~~l~aa~~~A~~~v~~k~~~~~~-~~~~~~~---~~~~~~l~~~~~~-~~~~-~-~~~~~~~~~~l~~~~~-~t 225 (295)
T PRK11689 154 NPLSYGLAFIGAFIWAAYCNVTRKYARGK-NGITLFF---ILTALALWIKYFL-SPQP-A-MVFSLPAIIKLLLAAA-AM 225 (295)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhhccCCC-CchhHHH---HHHHHHHHHHHHH-hcCc-c-ccCCHHHHHHHHHHHH-HH
Confidence 24699999999999999999999987776 6654422 2333333333332 2211 1 1123456777778774 78
Q ss_pred hHHHHHHHHHHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhheecc
Q 024838 163 CLNLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGK 226 (262)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~ 226 (262)
+++|.+|++++|+.++++++.+.+++|+++++++++++||++++.+++|+++++.|+++..+.+
T Consensus 226 ~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~~ 289 (295)
T PRK11689 226 GFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLAT 289 (295)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhhH
Confidence 9999999999999999999999999999999999999999999999999999999998876544
No 4
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.93 E-value=7.4e-25 Score=184.26 Aligned_cols=191 Identities=16% Similarity=0.243 Sum_probs=163.1
Q ss_pred CcccchhHHHHhhhchHHHHHHHHHHHhhhcccccCCCcchhhhhHHHHhHHHHHHHHhcCCCCCCCCCCCcccCCCccc
Q 024838 1 MKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVH 80 (262)
Q Consensus 1 l~~~s~~~a~~i~~~~pi~~~ll~~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~~~ 80 (262)
++|+++++++++.+++|+++++++++++|||+++++ +.|++++++|++++.. +++ .
T Consensus 68 ~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~------~~gi~i~~~Gv~li~~-~~~-----------------~ 123 (260)
T TIGR00950 68 VKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLV------LLAAVLGLAGAVLLLS-DGN-----------------L 123 (260)
T ss_pred HHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHH------HHHHHHHHHhHHhhcc-CCc-----------------c
Confidence 478999999999999999999999999999999888 9999999999988753 111 1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhhhhcC-ChhHHHHHHHHHHHHHHHHHHHHhccCcccccccchhhHHHHHHHhh
Q 024838 81 ENWLKGSILTVASCILWSSFYIMQAFTLKKYP-AKLSISAWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGA 159 (262)
Q Consensus 81 ~~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi 159 (262)
+....|++++++++++|+.+.++.|+..++.+ ++.....+++..+.+.+.+.....++. ... +...|..+++.++
T Consensus 124 ~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~---~~~~~~~~~~~~~ 199 (260)
T TIGR00950 124 SINPAGLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPN-PQA---LSLQWGALLYLGL 199 (260)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCC-CCc---chHHHHHHHHHHH
Confidence 12357999999999999999999999887762 244555577888888888887754332 111 3557888899999
Q ss_pred hhhhHHHHHHHHHHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHH
Q 024838 160 VSSCLNLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGL 219 (262)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~ 219 (262)
+++.++|.+|++++++.++.+++.+.+++|+++.++++++++|++++.+++|+.+++.|+
T Consensus 200 ~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 200 IGTALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999986
No 5
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.93 E-value=1.1e-24 Score=186.24 Aligned_cols=197 Identities=14% Similarity=0.145 Sum_probs=164.0
Q ss_pred cccchhHHHHhhhchHHHHHHHHHHHhhhcccccCCCcchhhhhHHHHhHHHHHHHHhcCCCCCCCCCCCcccCCCcccc
Q 024838 2 KYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVHE 81 (262)
Q Consensus 2 ~~~s~~~a~~i~~~~pi~~~ll~~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (262)
++++++.++++.++.|+++++++++ +|||+++++ +.|++++++|+.++.. ++. . +
T Consensus 92 ~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~------~~~~~la~~Gv~ll~~-~~~-~----------------~ 146 (292)
T PRK11272 92 QNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLE------WLGIAIGLAGIVLLNS-GGN-L----------------S 146 (292)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhH------HHHHHHHHHhHHHHhc-Ccc-c----------------c
Confidence 6789999999999999999999986 689999888 9999999999887743 111 0 1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHhccCcccccccchhhHHHHHHHhhhh
Q 024838 82 NWLKGSILTVASCILWSSFYIMQAFTLKKYPAKLSISAWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAVS 161 (262)
Q Consensus 82 ~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~ 161 (262)
....|++++++++++||.|.+..|+..++ ++....++++..+++.+.++....+.... ...+...|..+++.++++
T Consensus 147 ~~~~G~l~~l~a~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~l~i~~ 222 (292)
T PRK11272 147 GNPWGAILILIASASWAFGSVWSSRLPLP--VGMMAGAAEMLAAGVVLLIASLLSGERLT--ALPTLSGFLALGYLAVFG 222 (292)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhcCCC--cchHHHHHHHHHHHHHHHHHHHHcCCccc--ccCCHHHHHHHHHHHHHH
Confidence 12479999999999999999999986543 44556678888888877777654332211 112456788999999999
Q ss_pred hhHHHHHHHHHHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhheeccc
Q 024838 162 SCLNLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGKE 227 (262)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~ 227 (262)
+.++|.+|++++++.++++++.+.+++|+++++++++++||++++.+++|+++++.|+++..++++
T Consensus 223 s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~~ 288 (292)
T PRK11272 223 SIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGKY 288 (292)
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999876554
No 6
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.93 E-value=3.4e-25 Score=190.44 Aligned_cols=203 Identities=14% Similarity=0.133 Sum_probs=159.8
Q ss_pred CcccchhHHHHhhhchHHHHHHHHHHHhhhcccccCCCcchhhhhHHHHhHHHHHHHHhcCCCCCCCCCCCcccCCCccc
Q 024838 1 MKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVH 80 (262)
Q Consensus 1 l~~~s~~~a~~i~~~~pi~~~ll~~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~~~ 80 (262)
++|+++++++++.+++|+++++++++++|||+++++ +.|++++++|+++... ++ .
T Consensus 86 l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~------~~~l~l~~~Gv~l~~~--~~-----------------~ 140 (302)
T TIGR00817 86 LSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTL------WLSLLPIVGGVALASD--TE-----------------L 140 (302)
T ss_pred HHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHH------HHHHHHHHHHHhhhcC--Cc-----------------c
Confidence 479999999999999999999999999999999888 9999999999976531 11 1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhhh--hcCChhHHHHHHHHHHHHHHHHHHHHhccCcc---cccc----cc-hhh
Q 024838 81 ENWLKGSILTVASCILWSSFYIMQAFTLK--KYPAKLSISAWMNCIGAAQSAVYTIIVQPKAA---AWST----TS-GID 150 (262)
Q Consensus 81 ~~~~~G~~l~l~a~~~~a~~~v~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---~~~~----~~-~~~ 150 (262)
+....|++++++++++|+.|.++.||..+ +. ++.....+++..+.+.+.|+....++... .+.. .. ...
T Consensus 141 ~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~-~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (302)
T TIGR00817 141 SFNWAGFLSAMISNITFVSRNIFSKKAMTIKSL-DKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKI 219 (302)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHhhccCCC-CcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHH
Confidence 11246999999999999999999999887 66 89999999999999999998876543111 0100 00 011
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhheecccCc
Q 024838 151 LWCIIYSGAVSSCLNLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGKEGD 229 (262)
Q Consensus 151 ~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~~ 229 (262)
+...++.++.+....+.+++.++++.++++.++..+++|+++++++++++||+++..+++|+++++.|++++++.|+++
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k~~~ 298 (302)
T TIGR00817 220 YTVSLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVKAQK 298 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHhccC
Confidence 2112222322222233455689999999999999999999999999999999999999999999999999999765443
No 7
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.92 E-value=8.3e-24 Score=181.13 Aligned_cols=212 Identities=16% Similarity=0.179 Sum_probs=172.9
Q ss_pred CcccchhHHHHhhhchHHHHHHHHHHHhhhcccccCCCcchhhhhHHHHhHHHHHHHHhcCCCCCCCCCCCcccCCCccc
Q 024838 1 MKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVH 80 (262)
Q Consensus 1 l~~~s~~~a~~i~~~~pi~~~ll~~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~~~ 80 (262)
++||+.+.++++.+++-+++++++++++|+|.++.+ ++|+++.++|+.++...|.... +.+++.
T Consensus 100 ~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~------~~gv~i~i~Gv~lv~~sD~~~~----------~~~~~~ 163 (334)
T PF06027_consen 100 YQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFH------ILGVLICIAGVVLVVVSDVLSG----------SDSSSG 163 (334)
T ss_pred hhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHH------HHHHHHHHhhhhheeeeccccc----------ccCCCC
Confidence 489999999999999999999999999988888887 9999999999888875322211 111134
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHhccC-cccccccchhhHHHHHHHhh
Q 024838 81 ENWLKGSILTVASCILWSSFYIMQAFTLKKYPAKLSISAWMNCIGAAQSAVYTIIVQPK-AAAWSTTSGIDLWCIIYSGA 159 (262)
Q Consensus 81 ~~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~gi 159 (262)
.+...|++++++++++||.++++.++..|+. +......+..+++.++..+...+.|.+ .+.... +...+. ......
T Consensus 164 ~~~i~GDll~l~~a~lya~~nV~~E~~v~~~-~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w-~~~~~~-~~v~~~ 240 (334)
T PF06027_consen 164 SNPILGDLLALLGAILYAVSNVLEEKLVKKA-PRVEFLGMLGLFGFIISGIQLAILERSGIESIHW-TSQVIG-LLVGYA 240 (334)
T ss_pred CccchhHHHHHHHHHHHHHHHHHHHHhcccC-CHHHHHHHHHHHHHHHHHHHHHheehhhhhccCC-ChhhHH-HHHHHH
Confidence 4567999999999999999999999999998 888889999999999998888777662 222222 122233 333234
Q ss_pred hhhhHHHHHHHHHHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhheecccCccc
Q 024838 160 VSSCLNLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGKEGDQH 231 (262)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~~~~ 231 (262)
++...-|.+....++..+|+..++-..+..+++++++++++|+++++..++|.++++.|.+++...+++.++
T Consensus 241 ~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~~~~ 312 (334)
T PF06027_consen 241 LCLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESPEEE 312 (334)
T ss_pred HHHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCcccc
Confidence 466778888889999999999999999999999999999999999999999999999999999977665544
No 8
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.90 E-value=6.7e-23 Score=174.39 Aligned_cols=193 Identities=12% Similarity=0.096 Sum_probs=146.6
Q ss_pred CcccchhHHHHhhhchHHHHHHHHHHHhhhcccccCCCcchhhhhHHHHhHHHHHHHHhcCCCCCCCCCCCcccCCCccc
Q 024838 1 MKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVH 80 (262)
Q Consensus 1 l~~~s~~~a~~i~~~~pi~~~ll~~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~~~ 80 (262)
++|++++.++.+.+++|+++++++++++|||+++++ +.|+.++++|+.++.. .+.. .
T Consensus 84 ~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~------~~g~~~~~~Gv~ll~~--~~~~---------------~ 140 (281)
T TIGR03340 84 YHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLA------WLGILIITLGLLVLGL--SRFA---------------Q 140 (281)
T ss_pred HhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHH------HHHHHHHHHHHHHHhc--cccc---------------c
Confidence 368899999999999999999999999999999998 9999999999988753 1110 1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCChh-H---HHHHHHHHHHHHHHHHHHHhccCcccccccchhhHHHHHH
Q 024838 81 ENWLKGSILTVASCILWSSFYIMQAFTLKKYPAKL-S---ISAWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIY 156 (262)
Q Consensus 81 ~~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~-~---~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (262)
....|+.++++++++|+.|.+..|+..++. ++. . ...+.+...++...+.....+.. ... .....+..+++
T Consensus 141 -~~~~g~~~~l~aal~~a~~~i~~k~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~ 215 (281)
T TIGR03340 141 -HRRKAYAWALAAALGTAIYSLSDKAAALGV-PAFYSALGYLGIGFLAMGWPFLLLYLKRHGR--SMF-PYARQILPSAT 215 (281)
T ss_pred -cchhHHHHHHHHHHHHHHhhhhccccccch-hcccccHHHHHHHHHHHHHHHHHHHHHHhcc--chh-hhHHHHHHHHH
Confidence 113577889999999999999988765444 322 1 22222222211111111111111 111 12334566778
Q ss_pred HhhhhhhHHHHHHHHHHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhh
Q 024838 157 SGAVSSCLNLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYS 221 (262)
Q Consensus 157 ~gi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l 221 (262)
.+.+++.++|.+|++++++.++++++.+.+++|+++.+++++++||+++..+++|+++++.|+++
T Consensus 216 ~~~~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 216 LGGLMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 88889999999999999999999999999999999999999999999999999999999999876
No 9
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.90 E-value=1.4e-22 Score=173.34 Aligned_cols=196 Identities=13% Similarity=0.060 Sum_probs=152.2
Q ss_pred CcccchhHHHHhhhchHHHHHHHHHHHhhhcccccCCCcchhhhhHHHHhHHHHHHHHhcCCCCCCCCCCCcccCCCccc
Q 024838 1 MKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVH 80 (262)
Q Consensus 1 l~~~s~~~a~~i~~~~pi~~~ll~~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~~~ 80 (262)
++|++++.++++..+.|+++++++. ||.+ + ..++.++++|++++.. .+... .
T Consensus 92 l~~~~~~~a~~l~~t~Pi~~~ll~~----~~~~--~------~~~~~i~~~Gv~li~~-~~~~~---------------~ 143 (293)
T PRK10532 92 IQTVPLGIAVALEFTGPLAVALFSS----RRPV--D------FVWVVLAVLGLWFLLP-LGQDV---------------S 143 (293)
T ss_pred HhcccHHHHHHHHHHHHHHHHHHhc----CChH--H------HHHHHHHHHHHheeee-cCCCc---------------c
Confidence 4789999999999999999988763 3322 2 4556778999887752 12110 1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHhccCcccccccchhhHHHHHHHhhh
Q 024838 81 ENWLKGSILTVASCILWSSFYIMQAFTLKKYPAKLSISAWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAV 160 (262)
Q Consensus 81 ~~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~ 160 (262)
+....|++++++++++|+.|.+..|+..++. ++... ++...++++.+.++....++. .. .+...|..++++|++
T Consensus 144 ~~~~~G~ll~l~aa~~~a~~~v~~r~~~~~~-~~~~~-~~~~~~~~~~l~~~~~~~~~~-~~---~~~~~~~~~l~lgv~ 217 (293)
T PRK10532 144 HVDLTGAALALGAGACWAIYILSGQRAGAEH-GPATV-AIGSLIAALIFVPIGALQAGE-AL---WHWSILPLGLAVAIL 217 (293)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHhccC-CchHH-HHHHHHHHHHHHHHHHHccCc-cc---CCHHHHHHHHHHHHH
Confidence 1124799999999999999999999987776 66554 455566666666665543221 11 123456667899999
Q ss_pred hhhHHHHHHHHHHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhheecccCcc
Q 024838 161 SSCLNLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGKEGDQ 230 (262)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~~~ 230 (262)
++.++|.+|++++++.++++++.+.+++|+++.+++++++||+++..+++|++++++|.+...+..+++.
T Consensus 218 ~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~~~~ 287 (293)
T PRK10532 218 STALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTIRREP 287 (293)
T ss_pred HHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999876654433
No 10
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.89 E-value=3.3e-22 Score=171.32 Aligned_cols=189 Identities=12% Similarity=0.126 Sum_probs=140.0
Q ss_pred CcccchhHHHHhhhchHHHHHHHHHHHhhhcccccCCCcchhhhhHHHHhHHHHHHHHhcCCCCCCCCCCCcccCCCccc
Q 024838 1 MKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVH 80 (262)
Q Consensus 1 l~~~s~~~a~~i~~~~pi~~~ll~~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~~~ 80 (262)
++|+++++++++.++.|+++++++++++|||+++++ +.|++++++|+.++....+ +
T Consensus 94 ~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~------~~g~~l~~~Gv~li~~~~~------------------~ 149 (296)
T PRK15430 94 VNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQ------WLAVILAICGVLVQLWTFG------------------S 149 (296)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHH------HHHHHHHHHHHHHHHHHcC------------------C
Confidence 478999999999999999999999999999999998 9999999999988863111 1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhhhhcC-ChhHHHHHHHHHHHHHHHHHHHHhccCcccccccchhh-HHHHHHHh
Q 024838 81 ENWLKGSILTVASCILWSSFYIMQAFTLKKYP-AKLSISAWMNCIGAAQSAVYTIIVQPKAAAWSTTSGID-LWCIIYSG 158 (262)
Q Consensus 81 ~~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g 158 (262)
. ..++++++++||.|.+..|+..++.. +......+....+.+...+. .......+. .++.. +..+.+.|
T Consensus 150 ~-----~~~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~g 220 (296)
T PRK15430 150 L-----PIIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAI---ADSSTSHMG-QNPMSLNLLLIAAG 220 (296)
T ss_pred c-----cHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHH---ccCCccccc-CCcHHHHHHHHHHH
Confidence 0 14688899999999999888643221 12222333333333222111 111111111 12222 33344445
Q ss_pred hhhhhHHHHHHHHHHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhhe
Q 024838 159 AVSSCLNLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLL 223 (262)
Q Consensus 159 i~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~ 223 (262)
+ .+.++|.+|++++++.++++++.+.+++|+++.+++++++||++++.+++|+++++.|+.+..
T Consensus 221 ~-~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~ 284 (296)
T PRK15430 221 I-VTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFV 284 (296)
T ss_pred H-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 4 678999999999999999999999999999999999999999999999999999988876654
No 11
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.89 E-value=2.9e-22 Score=175.17 Aligned_cols=199 Identities=16% Similarity=0.173 Sum_probs=161.1
Q ss_pred CcccchhHHHHhhhchHHHHHHHHHHHhhhcccccCCCcchhhhhHHHHhHHHHHHHHhcCCCCCCCCCCCcccCCCccc
Q 024838 1 MKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVH 80 (262)
Q Consensus 1 l~~~s~~~a~~i~~~~pi~~~ll~~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~~~ 80 (262)
++++++++++++..++|+++++++++++|||+++++ +.+++++++|+++... ++ .
T Consensus 135 l~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~------~l~l~l~v~Gv~l~~~--~~-----------------~ 189 (350)
T PTZ00343 135 MGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYA------YLSLIPIVGGVALASV--KE-----------------L 189 (350)
T ss_pred HhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHH------HHHHHHHHHHHHheec--cc-----------------c
Confidence 468999999999999999999999999999998888 9999999999988753 21 1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhhhhcC------ChhHHHHHHHHHHHHHHHHHHHHhccC--ccccc----ccch
Q 024838 81 ENWLKGSILTVASCILWSSFYIMQAFTLKKYP------AKLSISAWMNCIGAAQSAVYTIIVQPK--AAAWS----TTSG 148 (262)
Q Consensus 81 ~~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~----~~~~ 148 (262)
+....|++++++++++|+.+.++.|+..++.+ ++.+...+....++++++|+..+.|.. ...+. ....
T Consensus 190 ~~~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~ 269 (350)
T PTZ00343 190 HFTWLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTN 269 (350)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccc
Confidence 11247999999999999999999999887641 455566677889999999988765431 11110 0011
Q ss_pred hhHHHHHHHhhhhhhHHHHHHHH----HHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhhee
Q 024838 149 IDLWCIIYSGAVSSCLNLFIQLW----CIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLW 224 (262)
Q Consensus 149 ~~~~~~~~~gi~~~~~~~~~~~~----~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~ 224 (262)
..+..+++ .++.++++|.+|+. +++++++...++..+++|+++++++++++||++++.+++|+++++.|++++++
T Consensus 270 ~~~~~~l~-~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~ 348 (350)
T PTZ00343 270 YTKGIIIF-KIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSL 348 (350)
T ss_pred cchHHHHH-HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhh
Confidence 12233344 45567899999995 99999999999999999999999999999999999999999999999999876
Q ss_pred c
Q 024838 225 G 225 (262)
Q Consensus 225 ~ 225 (262)
-
T Consensus 349 ~ 349 (350)
T PTZ00343 349 F 349 (350)
T ss_pred c
Confidence 4
No 12
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.84 E-value=1.9e-19 Score=153.07 Aligned_cols=196 Identities=20% Similarity=0.343 Sum_probs=156.0
Q ss_pred CcccchhHHHHhhhchHHHHHHHHH-HHhhhcccccCCCcchhhhhHHHHhHHHHHHHHhcCCCCCCCCCCCcccCCCcc
Q 024838 1 MKYVHPTFMTAVVNTIPCMTFIIAV-VFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSV 79 (262)
Q Consensus 1 l~~~s~~~a~~i~~~~pi~~~ll~~-~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~~ 79 (262)
++|++++.++++.++.|+++.++++ ++++||+++++ +.++++.+.|++++... +... .
T Consensus 91 ~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~------~~~~~~~~~Gv~lv~~~-~~~~--------------~ 149 (292)
T COG0697 91 LKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQ------ILGILLALAGVLLILLG-GGGG--------------G 149 (292)
T ss_pred HhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHH------HHHHHHHHHhHHheecC-CCcc--------------h
Confidence 3689999999999999999999997 77799999988 99999999999888641 2111 0
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHH-HHHHHHHHHHHHHHHHhccCcccccccchhhHHHHHHHh
Q 024838 80 HENWLKGSILTVASCILWSSFYIMQAFTLKKYPAKLSISA-WMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSG 158 (262)
Q Consensus 80 ~~~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 158 (262)
.. ...|+.+.+.++++|+.+.+..|+.. +. ++..... +... .............. . .......|..+.+.|
T Consensus 150 ~~-~~~g~~~~l~a~~~~a~~~~~~~~~~-~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~g 221 (292)
T COG0697 150 IL-SLLGLLLALAAALLWALYTALVKRLS-RL-GPVTLALLLQLL--LALLLLLLFFLSGF-G--APILSRAWLLLLYLG 221 (292)
T ss_pred hH-HHHHHHHHHHHHHHHHHHHHHHHHhc-CC-ChHHHHHHHHHH--HHHHHHHHHHhccc-c--ccCCHHHHHHHHHHH
Confidence 11 46899999999999999999999877 44 5555554 3333 22222222211111 1 222345788899999
Q ss_pred hhhhhHHHHHHHHHHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhheec
Q 024838 159 AVSSCLNLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWG 225 (262)
Q Consensus 159 i~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~ 225 (262)
++++++++.++++++++.++..++.+.+++|+++.++++++++|+++..+++|+++++.|+.+...+
T Consensus 222 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 222 VFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 9888899999999999999999999999999999999999999999999999999999999998865
No 13
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=99.80 E-value=1.2e-20 Score=152.16 Aligned_cols=210 Identities=18% Similarity=0.186 Sum_probs=163.8
Q ss_pred CcccchhHHHHhhhchHHHHHHHHHHHhhhcccccCCCcchhhhhHHHHhHHHHHHHHhcCCCCCCCCCCCcccCCCccc
Q 024838 1 MKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVH 80 (262)
Q Consensus 1 l~~~s~~~a~~i~~~~pi~~~ll~~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~~~ 80 (262)
++|.+.++|.+|...+|.|+.+++|+++||+.++.+ .++..+.+.|++++. +.+...+. +...+.+++-
T Consensus 118 ~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~e------aL~s~itl~GVVLIv--RPpFlFG~---~t~g~~~s~~ 186 (346)
T KOG4510|consen 118 LMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFE------ALGSLITLLGVVLIV--RPPFLFGD---TTEGEDSSQV 186 (346)
T ss_pred HhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHH------HHHHHHhhheEEEEe--cCCcccCC---Cccccccccc
Confidence 468899999999999999999999999999999888 999999999999886 45543211 1112222232
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHhccCccccccc-chhhHHHHHHHhh
Q 024838 81 ENWLKGSILTVASCILWSSFYIMQAFTLKKYPAKLSISAWMNCIGAAQSAVYTIIVQPKAAAWSTT-SGIDLWCIIYSGA 159 (262)
Q Consensus 81 ~~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~gi 159 (262)
+....|...++.+++.-|.-+++.|+..|+. +..-...+...++.+..+..... .+ .+..+ ..++|+....+|+
T Consensus 187 ~~~~~gt~aai~s~lf~asvyIilR~iGk~~-h~~msvsyf~~i~lV~s~I~~~~-ig---~~~lP~cgkdr~l~~~lGv 261 (346)
T KOG4510|consen 187 EYDIPGTVAAISSVLFGASVYIILRYIGKNA-HAIMSVSYFSLITLVVSLIGCAS-IG---AVQLPHCGKDRWLFVNLGV 261 (346)
T ss_pred cccCCchHHHHHhHhhhhhHHHHHHHhhccc-cEEEEehHHHHHHHHHHHHHHhh-cc---ceecCccccceEEEEEehh
Confidence 3345678888999999999999999988888 55544445445555544444331 12 23322 3568888889998
Q ss_pred hhhhHHHHHHHHHHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhheeccc
Q 024838 160 VSSCLNLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGKE 227 (262)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~ 227 (262)
.+++++.+...++|+..+.++++..+...+++.+|.+++|++.|+++.|.|+++++.+.+....+|.
T Consensus 262 -fgfigQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a~~kw 328 (346)
T KOG4510|consen 262 -FGFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVALKKW 328 (346)
T ss_pred -hhhHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHHHHHH
Confidence 4589999999999999999999999999999999999999999999999999999999887765554
No 14
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=99.79 E-value=1.1e-18 Score=147.08 Aligned_cols=211 Identities=14% Similarity=0.261 Sum_probs=171.1
Q ss_pred CcccchhHHHHhhhchHHHHHHHHHHHhhhcccccCCCcchhhhhHHHHhHHHHHHHHhcCCCCCCCCCCCcccCCCccc
Q 024838 1 MKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVH 80 (262)
Q Consensus 1 l~~~s~~~a~~i~~~~pi~~~ll~~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~~~ 80 (262)
|.||+++...++..++.+|+.+++.++.+||++..+ ++++.+.++|++++...++.. .++...
T Consensus 180 La~TsVAS~TilSStSs~FtL~la~if~~e~ft~sK------llav~~si~GViiVt~~~s~~-----------~~~~~a 242 (416)
T KOG2765|consen 180 LAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSK------LLAVFVSIAGVIIVTMGDSKQ-----------NSDLPA 242 (416)
T ss_pred hhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHH------HHHHHHhhccEEEEEeccccc-----------cccCCc
Confidence 578999999999999999999999999999999988 999999999998887532211 111134
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHH---HHHHHHHHHHHHHHHhcc-CcccccccchhhHHHHHH
Q 024838 81 ENWLKGSILTVASCILWSSFYIMQAFTLKKYPAKLSISAW---MNCIGAAQSAVYTIIVQP-KAAAWSTTSGIDLWCIIY 156 (262)
Q Consensus 81 ~~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 156 (262)
.+...|+++++++|+.||.|.++.||...+......+..+ ..++..+++.|..++... ..+.++.++..+...++.
T Consensus 243 ~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~ 322 (416)
T KOG2765|consen 243 SRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVF 322 (416)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeH
Confidence 4557899999999999999999999877666223333333 334444455544443222 446677777778888888
Q ss_pred HhhhhhhHHHHHHHHHHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhheecccC
Q 024838 157 SGAVSSCLNLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGKEG 228 (262)
Q Consensus 157 ~gi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~ 228 (262)
.+++.++++-++|.++.-..++..+++-+.++.+.+++.+.++-+.++++.+++|...+++|.+.+++....
T Consensus 323 ~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~~ 394 (416)
T KOG2765|consen 323 NNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSEN 394 (416)
T ss_pred hhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheeccccc
Confidence 899999999999999999999999999999999999999999999999999999999999999998865543
No 15
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.76 E-value=1.8e-17 Score=139.13 Aligned_cols=165 Identities=8% Similarity=0.042 Sum_probs=120.6
Q ss_pred CcccchhHHHHhhhchHHHHHHHHHHHhhhcccccCCCcchhhhhHHHHhHHHHHHHHhcCCCCCCCCCCCcccCCCccc
Q 024838 1 MKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVH 80 (262)
Q Consensus 1 l~~~s~~~a~~i~~~~pi~~~ll~~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~~~ 80 (262)
++|+++++++++.++.|+++++++++++|||+++++ +.+++++++|++++... + . +
T Consensus 91 ~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~------~l~~~~~~~Gv~li~~~-~--~---------------~ 146 (256)
T TIGR00688 91 VNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQ------FIAVIIATLGVISNIVL-K--G---------------S 146 (256)
T ss_pred HHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHH-c--C---------------C
Confidence 478999999999999999999999999999999998 99999999999887531 1 0 1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHhccCcccccccchhhHHHHHHHhhh
Q 024838 81 ENWLKGSILTVASCILWSSFYIMQAFTLKKYPAKLSISAWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAV 160 (262)
Q Consensus 81 ~~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~ 160 (262)
. ..++++++++|+.|.+..|+..++ +....... .....+...+..+.... ..........+|..+++.|++
T Consensus 147 ~-----~~~~l~aa~~~a~~~i~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~g~~ 217 (256)
T TIGR00688 147 L-----PWEALVLAFSFTAYGLIRKALKNT--DLAGFCLE-TLSLMPVAIYYLLQTDF-ATVQQTNPFPIWLLLVLAGLI 217 (256)
T ss_pred c-----hHHHHHHHHHHHHHHHHHhhcCCC--CcchHHHH-HHHHHHHHHHHHHHhcc-CcccccCchhHHHHHHHHHHH
Confidence 0 135788999999999999886543 32222211 12222222222221111 111111122478888888875
Q ss_pred hhhHHHHHHHHHHhhcCceeeeehhchHHHHHHHHHHHH
Q 024838 161 SSCLNLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFL 199 (262)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~ 199 (262)
+.++|.++++++|+.++++++++.+++|+++.++++++
T Consensus 218 -t~i~~~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 218 -TGTPLLAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred -HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 88999999999999999999999999999999999874
No 16
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.75 E-value=4.6e-17 Score=139.95 Aligned_cols=213 Identities=17% Similarity=0.212 Sum_probs=167.2
Q ss_pred CcccchhHHHHhhhchHHHHHHHHHHHhhhcccccCCCcchhhhhHHHHhHHHHHHHHhcCCCCCCCCCCCcccCCCccc
Q 024838 1 MKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVH 80 (262)
Q Consensus 1 l~~~s~~~a~~i~~~~pi~~~ll~~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~~~ 80 (262)
++|.|.+.-.++..+.|+++++++++++|+|.+.++ +.++++..+|+.+.... +...+.. .+...
T Consensus 85 l~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~------~~~v~li~~Gv~~~~~~--~~~~~~~-------~~~~~ 149 (303)
T PF08449_consen 85 LKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQ------YLSVLLITIGVAIFTLS--DSSSSSS-------SNSSS 149 (303)
T ss_pred HHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHH------HHHHHHHHhhHheeeec--ccccccc-------ccccc
Confidence 478899999999999999999999999966666665 99999999999888752 2210000 00011
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhhhhcC-ChhHHHHHHHHHHHHHHHHHHHH--hccCcc--cccccchhhHHHHH
Q 024838 81 ENWLKGSILTVASCILWSSFYIMQAFTLKKYP-AKLSISAWMNCIGAAQSAVYTII--VQPKAA--AWSTTSGIDLWCII 155 (262)
Q Consensus 81 ~~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~ 155 (262)
.+...|+++.+++.++.+...+.+++..++++ ++....++...++.+..++.... ...... .+....+..+..++
T Consensus 150 ~~~~~G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~ 229 (303)
T PF08449_consen 150 FSSALGIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLL 229 (303)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHH
Confidence 22234999999999999999999999998875 67899999999999988888776 222111 11122233444444
Q ss_pred HHhhhhhhHHHHHHHHHHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhheecccCc
Q 024838 156 YSGAVSSCLNLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGKEGD 229 (262)
Q Consensus 156 ~~gi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~~ 229 (262)
...+ ++.++..+.+...++.++...++...+..+++++++.+++++++++.+|+|.++++.|..++.+.|+|+
T Consensus 230 ~~s~-~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k~ 302 (303)
T PF08449_consen 230 LFSL-TGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKKK 302 (303)
T ss_pred HHHH-HHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhccC
Confidence 4443 667888888899999999999999999999999999999999999999999999999999998877654
No 17
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.70 E-value=6e-16 Score=111.59 Aligned_cols=136 Identities=13% Similarity=0.137 Sum_probs=120.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHhccCcccccccchhhHHHHHHHhhhhhhHH
Q 024838 86 GSILTVASCILWSSFYIMQAFTLKKYPAKLSISAWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAVSSCLN 165 (262)
Q Consensus 86 G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~ 165 (262)
..++++++++++++..++.|-..++. ||...++.+.++..+.+..+.+...+ .......+++.|..+...|+ +++++
T Consensus 4 ~~~~ALLsA~fa~L~~iF~KIGl~~v-dp~~At~IRtiVi~~~l~~v~~~~g~-~~~~~~~~~k~~lflilSGl-a~gls 80 (140)
T COG2510 4 AIIYALLSALFAGLTPIFAKIGLEGV-DPDFATTIRTIVILIFLLIVLLVTGN-WQAGGEIGPKSWLFLILSGL-AGGLS 80 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHHHHHHHHhcCc-eecccccCcceehhhhHHHH-HHHHH
Confidence 57899999999999999999999988 99999999999998888888775543 22222236778999999995 88999
Q ss_pred HHHHHHHHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhhee
Q 024838 166 LFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLW 224 (262)
Q Consensus 166 ~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~ 224 (262)
+.+|+++++...++++..+.-++|++++++++++++|+++..+|+|+.++++|.+++.+
T Consensus 81 wl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~ 139 (140)
T COG2510 81 WLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL 139 (140)
T ss_pred HHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence 99999999999999999999999999999999999999999999999999999988764
No 18
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.70 E-value=1.5e-15 Score=124.98 Aligned_cols=191 Identities=9% Similarity=0.108 Sum_probs=154.5
Q ss_pred ccchhHHHHhhhchHHHHHHHHHHHhhhcccccCCCcchhhhhHHHHhHHHHHHHHhcCCCCCCCCCCCcccCCCcccch
Q 024838 3 YVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVHEN 82 (262)
Q Consensus 3 ~~s~~~a~~i~~~~pi~~~ll~~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (262)
+...-++++=+++.|++.++++++|+|||+++-| +++++++.+|+....+..|...
T Consensus 95 ~g~~leaSLGY~InPL~~VllG~lflkErls~~Q------~iAV~lA~~GV~~~~~~~g~lp------------------ 150 (293)
T COG2962 95 NGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQ------WIAVGLAAAGVLIQTWLLGSLP------------------ 150 (293)
T ss_pred CCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHH------HHHHHHHHHHHHHHHHHcCCCc------------------
Confidence 3456788999999999999999999999999988 9999999999988887433211
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHhccCcccccccchhhHHHHHHHhhhhh
Q 024838 83 WLKGSILTVASCILWSSFYIMQAFTLKKYPAKLSISAWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAVSS 162 (262)
Q Consensus 83 ~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~ 162 (262)
..++.-|++|+.|..+.|+ . +. |+.+....-+..-.+..+.+.+..+.+.......++..+..+...|. .+
T Consensus 151 -----wval~la~sf~~Ygl~RK~-~-~v-~a~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~~~~~~~LLv~aG~-vT 221 (293)
T COG2962 151 -----WVALALALSFGLYGLLRKK-L-KV-DALTGLTLETLLLLPVALIYLLFLADSGQFLQQNANSLWLLLVLAGL-VT 221 (293)
T ss_pred -----HHHHHHHHHHHHHHHHHHh-c-CC-chHHhHHHHHHHHhHHHHHHHHHHhcCchhhhcCCchHHHHHHHhhH-HH
Confidence 3466678899999988555 2 23 66777777777777777777665555332122134556777778887 67
Q ss_pred hHHHHHHHHHHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhheecc
Q 024838 163 CLNLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGK 226 (262)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~ 226 (262)
++...++..+-++++-+..+.++|++|..-.+++++++||+++..+++..+++.+|+.++.+..
T Consensus 222 avpL~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d~ 285 (293)
T COG2962 222 AVPLLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSIDG 285 (293)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999987544
No 19
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.68 E-value=2.1e-15 Score=119.94 Aligned_cols=210 Identities=17% Similarity=0.208 Sum_probs=168.6
Q ss_pred CcccchhHHHHhhhchHHHHHHHHHHHhhhcccccCCCcchhhhhHHHHhHHHHHHHHhcCCCCCCCCCCCcccCCCccc
Q 024838 1 MKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVH 80 (262)
Q Consensus 1 l~~~s~~~a~~i~~~~pi~~~ll~~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~~~ 80 (262)
+||.+=....+-..+-|+-++++++++. +++++|.+...++++++|+.+... +.... .+..+
T Consensus 106 lq~vpYPTqVlgKScKPIPVMilGVl~~------~KsY~w~kY~cVL~IV~GValFmY-K~~Kv-----------~g~e~ 167 (337)
T KOG1580|consen 106 LQYVPYPTQVLGKSCKPIPVMILGVLFA------HKSYHWRKYCCVLMIVVGVALFMY-KENKV-----------GGAED 167 (337)
T ss_pred hcccCCcHHHhcccCCCcceeeeehhhh------cccccHHHHHHHHHHHHHHHHhhc-ccccc-----------CCCcc
Confidence 4566666667777899999999999998 666677779999999999998875 43222 11134
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhhhhcC-ChhHHHHHHHHHHHHHHHHHHHHhcc--CcccccccchhhHHHHHHH
Q 024838 81 ENWLKGSILTVASCILWSSFYIMQAFTLKKYP-AKLSISAWMNCIGAAQSAVYTIIVQP--KAAAWSTTSGIDLWCIIYS 157 (262)
Q Consensus 81 ~~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 157 (262)
.....|.++.+++-.+-+.....+.+..+.+. ....++++..+++.+.+..-.++... ++.-+..-.+..|+-+..+
T Consensus 168 ~t~g~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfTGElweF~yF~~RhP~~~~~l~l~ 247 (337)
T KOG1580|consen 168 KTFGFGELLLILSLAMDGLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFTGELWEFFYFVQRHPYVFWDLTLL 247 (337)
T ss_pred cccchHHHHHHHHHHhcccchhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhheehhhHHHHHHHHHhccHHHHHHHHH
Confidence 55678999999999999999999998877763 67888999999999888877765433 1222222345667777788
Q ss_pred hhhhhhHHHHHHHHHHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhh-heecccCc
Q 024838 158 GAVSSCLNLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYS-LLWGKEGD 229 (262)
Q Consensus 158 gi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l-~~~~~~~~ 229 (262)
++ ++.+++++.+.-+...||...+++....-.|+++.++++++.+++.+||+|..+++.|+.. +..+|+.+
T Consensus 248 ai-~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~~~GK~a~ 319 (337)
T KOG1580|consen 248 AI-ASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADVVDGKKAP 319 (337)
T ss_pred HH-HHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHhhcCCcCc
Confidence 86 8899999999999999999999999999999999999999999999999999999999887 44555433
No 20
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=99.64 E-value=6.8e-15 Score=118.27 Aligned_cols=193 Identities=13% Similarity=0.028 Sum_probs=153.7
Q ss_pred ccchhHHHHhhhchHHHHHHHHHHHhhhcccccCCCcchhhhhHHHHhHHHHHHHHhcCCCCCCCCCCCcccCCCcccch
Q 024838 3 YVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVHEN 82 (262)
Q Consensus 3 ~~s~~~a~~i~~~~pi~~~ll~~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (262)
..+-+.+..+-.+-|+...+++---. +. ...+.+++.|+.++.. .++. ....
T Consensus 94 riPlGiAVAiEF~GPL~vA~~~sRr~------~d------~vwvaLAvlGi~lL~p-~~~~---------------~~~l 145 (292)
T COG5006 94 RIPLGIAVAIEFTGPLAVALLSSRRL------RD------FVWVALAVLGIWLLLP-LGQS---------------VWSL 145 (292)
T ss_pred hccchhhhhhhhccHHHHHHHhccch------hh------HHHHHHHHHHHHhhee-ccCC---------------cCcC
Confidence 34556777777888887776544221 44 7788899999888863 2322 2333
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHhccCcccccccchhhHHHHHHHhhhhh
Q 024838 83 WLKGSILTVASCILWSSFYIMQAFTLKKYPAKLSISAWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAVSS 162 (262)
Q Consensus 83 ~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~ 162 (262)
+..|..+++.++.+|+.|.+..||..+.. +....+..-+.++.++.+|+...... ....++.-...-+..+++++
T Consensus 146 Dp~Gv~~Al~AG~~Wa~YIv~G~r~g~~~-~g~~g~a~gm~vAaviv~Pig~~~ag----~~l~~p~ll~laLgvavlSS 220 (292)
T COG5006 146 DPVGVALALGAGACWALYIVLGQRAGRAE-HGTAGVAVGMLVAALIVLPIGAAQAG----PALFSPSLLPLALGVAVLSS 220 (292)
T ss_pred CHHHHHHHHHHhHHHHHHHHHcchhcccC-CCchHHHHHHHHHHHHHhhhhhhhcc----hhhcChHHHHHHHHHHHHhc
Confidence 46899999999999999999999988766 88888999999999999999884322 12224556667778899999
Q ss_pred hHHHHHHHHHHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhheecccC
Q 024838 163 CLNLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGKEG 228 (262)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~ 228 (262)
.+-|.+-..++++++....+.++.+||.++.+.+++++||.+|+.||.|..+++.+..=..+..+|
T Consensus 221 alPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~lt~~~ 286 (292)
T COG5006 221 ALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGSTLTARK 286 (292)
T ss_pred ccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccccccCC
Confidence 999999999999999999999999999999999999999999999999999999887755544333
No 21
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.63 E-value=8e-15 Score=125.17 Aligned_cols=199 Identities=16% Similarity=0.159 Sum_probs=145.1
Q ss_pred cccchhHHHHhhh-chHHHHHHHHHHHhhhcccccCCCcchhhhhHHHHhHHHHHHHHhcCCCCCCCCCCCcccCCCccc
Q 024838 2 KYVHPTFMTAVVN-TIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVH 80 (262)
Q Consensus 2 ~~~s~~~a~~i~~-~~pi~~~ll~~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~~~ 80 (262)
+|++.+.+..+.+ +.+++..+.+++++|||.++++ .+.-+.|+++.++|+.++...+++.. ...+.
T Consensus 81 ~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~--~~~~~~g~~l~l~G~~l~~~~~~~~~-----------~~~~~ 147 (290)
T TIGR00776 81 RYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQ--TLLGLLALILIIIGVYLTSRSKDKSA-----------GIKSE 147 (290)
T ss_pred HHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHH--HHHHHHHHHHHHHhHheEEecccccc-----------ccccc
Confidence 5778888888888 8899999999999988887653 11127889999999777753211100 00000
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHH---HHHHHHHHHHHHhccCcccccccchhhHHHHHHH
Q 024838 81 ENWLKGSILTVASCILWSSFYIMQAFTLKKYPAKLSISAWMNC---IGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYS 157 (262)
Q Consensus 81 ~~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (262)
.+...|++++++++++|+.|.+..|+. ++ ++.+..+.++. +++++...... +. ..+ .+..++.....
T Consensus 148 ~~~~~Gi~~~l~sg~~y~~~~~~~~~~--~~-~~~~~~~~~~~g~~~~~~~~~~~~~---~~-~~~---~~~~~~~~~~~ 217 (290)
T TIGR00776 148 FNFKKGILLLLMSTIGYLVYVVVAKAF--GV-DGLSVLLPQAIGMVIGGIIFNLGHI---LA-KPL---KKYAILLNILP 217 (290)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHc--CC-CcceehhHHHHHHHHHHHHHHHHHh---cc-cch---HHHHHHHHHHH
Confidence 233579999999999999999999875 35 77777444444 33332222211 10 112 23333334448
Q ss_pred hhhhhhHHHHHHHHHHh-hcCceeeeehhchHHHHHHHHHHHHhccccchhhH----hHHHHHHHHHhhhee
Q 024838 158 GAVSSCLNLFIQLWCIE-QRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCI----LGGLIVIIGLYSLLW 224 (262)
Q Consensus 158 gi~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~----~G~~li~~g~~l~~~ 224 (262)
|++ ..+++.+|..+.+ +.+++.++.+...+|+.+.++++++++|+.++.++ +|+++++.|+.+...
T Consensus 218 Gi~-~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~ 288 (290)
T TIGR00776 218 GLM-WGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGI 288 (290)
T ss_pred HHH-HHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhc
Confidence 887 6999999999999 99999999999999999999999999999999999 999999999988654
No 22
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.59 E-value=5.1e-15 Score=110.17 Aligned_cols=125 Identities=21% Similarity=0.417 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHhccCcccccccchhhHHHHHHHhhhhhhHHHHHHHHHHh
Q 024838 95 ILWSSFYIMQAFTLKKYPAKLSISAWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAVSSCLNLFIQLWCIE 174 (262)
Q Consensus 95 ~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~ 174 (262)
++||.+.+..|+..++. |+....++++..+.+ .++...+..... ....+...+...++.+++++.+++.+++++++
T Consensus 1 ~~~a~~~~~~k~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 76 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKKI-SPLSITFWRFLIAGI-LLILLLILGRKP--FKNLSPRQWLWLLFLGLLGTALAYLLYFYALK 76 (126)
T ss_pred ceeeeHHHHHHHHhccC-CHHHHHHHHHHHHHH-HHHHHHhhcccc--ccCCChhhhhhhhHhhccceehHHHHHHHHHH
Confidence 46899999999999998 999999999999998 666666554432 23334667888888998888999999999999
Q ss_pred hcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhhe
Q 024838 175 QRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLL 223 (262)
Q Consensus 175 ~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~ 223 (262)
+.+++.++.+.+++|+++.++++++++|++++.+++|+.+++.|+++..
T Consensus 77 ~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 77 YISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998764
No 23
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=99.55 E-value=2.7e-15 Score=127.40 Aligned_cols=204 Identities=15% Similarity=0.186 Sum_probs=162.0
Q ss_pred CcccchhHHHHhhhchHHHHHHHHHHHhhhcccccCCCcchhhhhHHHHhHHHHHHHHhcCCCCCCCCCCCcccCCCccc
Q 024838 1 MKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVH 80 (262)
Q Consensus 1 l~~~s~~~a~~i~~~~pi~~~ll~~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~~~ 80 (262)
++|.+.++...+..++|++++++++++.+|+.+.+. +..++....|+.+... ++.
T Consensus 104 l~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~------~lsL~piv~GV~ias~--~e~----------------- 158 (316)
T KOG1441|consen 104 LSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMT------YLSLLPIVFGVAIASV--TEL----------------- 158 (316)
T ss_pred hhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceE------EEEEEEeeeeEEEeee--ccc-----------------
Confidence 478999999999999999999999999988888887 8999989999877754 221
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhhh--hcC-ChhHHHHHHHHHHHHHHH-HHHHHhccCcc---cccccchhhHHH
Q 024838 81 ENWLKGSILTVASCILWSSFYIMQAFTLK--KYP-AKLSISAWMNCIGAAQSA-VYTIIVQPKAA---AWSTTSGIDLWC 153 (262)
Q Consensus 81 ~~~~~G~~l~l~a~~~~a~~~v~~~~~~~--~~~-~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~---~~~~~~~~~~~~ 153 (262)
.-...|.+.++++.+..+...++.|+..+ +.. ++++...++..++.+.++ |+....+++.. ... ........
T Consensus 159 ~fn~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~-~~~~~~~~ 237 (316)
T KOG1441|consen 159 SFNLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTA-PWFVTFLI 237 (316)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeecc-ccchhhHH
Confidence 11258999999999999999999999984 222 899999999999999999 87776655332 110 11112222
Q ss_pred HHHHhhhhhhHHHHHHHHHHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhheecccCccc
Q 024838 154 IIYSGAVSSCLNLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGKEGDQH 231 (262)
Q Consensus 154 ~~~~gi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~~~~ 231 (262)
+.+.. ++..+-....+..+.+++|...++.+.+.-++.++.++++|+++.++.+..|+++.++|+++|.+.|.++++
T Consensus 238 ~~~~s-v~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~~~~~ 314 (316)
T KOG1441|consen 238 LLLNS-VLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKLKEKK 314 (316)
T ss_pred HHHHH-HHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhhhhhc
Confidence 22323 233344445558899999999999999999999999999999999999999999999999999988876654
No 24
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=99.49 E-value=3.4e-14 Score=114.38 Aligned_cols=205 Identities=16% Similarity=0.185 Sum_probs=159.3
Q ss_pred cccchhHHHHhhhchHHHHHHHHHHHhhhcccccCCCcchhhhhHHHHhHHHHHHHHhcCCCCCCCCCCCcccCCCcccc
Q 024838 2 KYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVHE 81 (262)
Q Consensus 2 ~~~s~~~a~~i~~~~pi~~~ll~~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (262)
|||+-..+.++.+-..+.+++++|+++|-|-++-+ +.|+++.++|++++.. +|.. . +..+++.
T Consensus 100 QyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmk------i~gV~iCi~GvvmvV~--sDV~----a-----gd~aggs 162 (336)
T KOG2766|consen 100 QYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMK------ISGVVICIVGVVMVVF--SDVH----A-----GDRAGGS 162 (336)
T ss_pred hhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhhe------eeeEEeEecceEEEEE--eeec----c-----ccccCCC
Confidence 79999999999999999999999999977766666 9999999999988865 3221 0 1111344
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHhcc-CcccccccchhhHHHHHHH-hh
Q 024838 82 NWLKGSILTVASCILWSSFYIMQAFTLKKYPAKLSISAWMNCIGAAQSAVYTIIVQP-KAAAWSTTSGIDLWCIIYS-GA 159 (262)
Q Consensus 82 ~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-gi 159 (262)
+...|++++++++-+||..++..+.+.|+. |.........++++++...- ++++. ...... . +|....++ ..
T Consensus 163 np~~GD~lvi~GATlYaVSNv~EEflvkn~-d~~elm~~lgLfGaIIsaIQ-~i~~~~~~~tl~--w--~~~i~~yl~f~ 236 (336)
T KOG2766|consen 163 NPVKGDFLVIAGATLYAVSNVSEEFLVKNA-DRVELMGFLGLFGAIISAIQ-FIFERHHVSTLH--W--DSAIFLYLRFA 236 (336)
T ss_pred CCccCcEEEEecceeeeeccccHHHHHhcC-cHHHHHHHHHHHHHHHHHHH-HhhhccceeeEe--e--hHHHHHHHHHH
Confidence 556899999999999999999999999999 99999999999999999888 44444 211111 1 12222232 33
Q ss_pred hhhhHHHHHHHHHHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhheecccCccc
Q 024838 160 VSSCLNLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGKEGDQH 231 (262)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~~~~ 231 (262)
++.++-|.+.-..+|.-+++..++-...+-.+++++ ..||-+.+|...+..+.+..|.+++..+++.++.
T Consensus 237 L~MFllYsl~pil~k~~~aT~~nlslLTsDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiYs~re~~~~e 306 (336)
T KOG2766|consen 237 LTMFLLYSLAPILIKTNSATMFNLSLLTSDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIYSTREKDEEE 306 (336)
T ss_pred HHHHHHHHhhHHheecCCceEEEhhHhHHHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEeeccccCcHh
Confidence 455566666667899999999999999999999998 6788889999999999999999999766554433
No 25
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=99.44 E-value=3.5e-12 Score=105.82 Aligned_cols=204 Identities=13% Similarity=0.186 Sum_probs=143.1
Q ss_pred CcccchhHHHHhhhchHHHHHHHHHHHhhhcccccCCCcchhhhhHHHHhHHHHHHHHhcCCCCCCCCCCCcccCCCccc
Q 024838 1 MKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVH 80 (262)
Q Consensus 1 l~~~s~~~a~~i~~~~pi~~~ll~~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~~~ 80 (262)
++|.+|+..+++..+-.+++++++++++|+|++++| |.++++.++|+++.-. ++......++....+.+...
T Consensus 38 l~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~q------W~aL~lL~~Gv~lv~~--~~~~~~~~~~~~~~~~~~~~ 109 (244)
T PF04142_consen 38 LSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQ------WLALFLLVAGVVLVQL--SSSQSSDNSSSSSVHHDASN 109 (244)
T ss_pred HHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhh------HHHHHHHHHHHheeec--CCcccccccccccccccccc
Confidence 368899999999999999999999999999999888 9999999999888754 22221111111111111124
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhhhhcC-ChhHHHHHHHHHHHHHHHHHHHHhccC-cccccccchhhHHHHHHHh
Q 024838 81 ENWLKGSILTVASCILWSSFYIMQAFTLKKYP-AKLSISAWMNCIGAAQSAVYTIIVQPK-AAAWSTTSGIDLWCIIYSG 158 (262)
Q Consensus 81 ~~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g 158 (262)
.+...|.++.++++++-+...++.+|.+|+.. +....+....+.+.++.++...+.+.. ..+........+. .+.-
T Consensus 110 ~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~~~g~f~G~~~~--~~~~ 187 (244)
T PF04142_consen 110 QNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLSDGSAISESGFFHGYSWW--VWIV 187 (244)
T ss_pred chhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCchhhcchH--HHHH
Confidence 45678999999999999999999999998874 444555555666666666654443221 0100000111111 2222
Q ss_pred hhhhhHHHHHHHHHHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHH
Q 024838 159 AVSSCLNLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLI 214 (262)
Q Consensus 159 i~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~l 214 (262)
++..+++=.+....+|+.+...=+....+..+++.++++++++.+++....+|+.+
T Consensus 188 i~~~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~ 243 (244)
T PF04142_consen 188 IFLQAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAAL 243 (244)
T ss_pred HHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheec
Confidence 23334444566778899998888999999999999999999999999999999865
No 26
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=99.37 E-value=8.2e-12 Score=103.25 Aligned_cols=198 Identities=14% Similarity=0.180 Sum_probs=151.2
Q ss_pred CcccchhHHHHhhhchHHHHHHHHHHHhhhcccccCCCcchhhhhHHHHhHHHHHHHHhcCCCCCCCCCCCcccCCCccc
Q 024838 1 MKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVH 80 (262)
Q Consensus 1 l~~~s~~~a~~i~~~~pi~~~ll~~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~~~ 80 (262)
++|++.+..++....+++|+.+++.+|.-||+++.- ..-+++..+|+.+..+ ++ .
T Consensus 105 l~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L------~l~v~lI~~Glflft~-Ks------------------T 159 (349)
T KOG1443|consen 105 LEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWAL------VLIVLLIAVGLFLFTY-KS------------------T 159 (349)
T ss_pred eeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHHH------HHHHHHHhhheeEEEe-cc------------------c
Confidence 478889999999999999999999999999998775 5556666666666654 22 1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhhhhcC----ChhHHHHHHHHHHHHHHHHHHHHhccCcc-----cccccchhh-
Q 024838 81 ENWLKGSILTVASCILWSSFYIMQAFTLKKYP----AKLSISAWMNCIGAAQSAVYTIIVQPKAA-----AWSTTSGID- 150 (262)
Q Consensus 81 ~~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~~~~- 150 (262)
+-...|.++..+++++-++-..+.++.+++.| +|.+..+...-+..+.++|..+.+|+... .+...++..
T Consensus 160 qf~i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~ 239 (349)
T KOG1443|consen 160 QFNIEGFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLI 239 (349)
T ss_pred ceeehhHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHH
Confidence 22357999999999999999999988888874 68899999999999999999998887332 222222221
Q ss_pred HHHHHHHhhhhhhHHHH---HHHHHHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhhee
Q 024838 151 LWCIIYSGAVSSCLNLF---IQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLW 224 (262)
Q Consensus 151 ~~~~~~~gi~~~~~~~~---~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~ 224 (262)
+..+...++ ++.+++. +-+..+.+++....++.....-+-+.+++..+.++.++...|.|..++..|+.+..+
T Consensus 240 ~rv~g~i~l-~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~~~ 315 (349)
T KOG1443|consen 240 LRVIGLISL-GGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLHRN 315 (349)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHhcc
Confidence 222222221 3333333 333567888999999999999999999999999999999999999999999999843
No 27
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.33 E-value=8e-11 Score=98.46 Aligned_cols=205 Identities=14% Similarity=0.176 Sum_probs=163.6
Q ss_pred CcccchhHHHHhhhchHHHHHHHHHHHhhhcccccCCCcchhhhhHHHHhHHHHHHHHhcCCCCCCCCCCCcccCCCccc
Q 024838 1 MKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVH 80 (262)
Q Consensus 1 l~~~s~~~a~~i~~~~pi~~~ll~~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~~~ 80 (262)
+||.+....+++.+.+|+++++....+++ ++|++..+.++.+.++|...... .+..
T Consensus 98 lk~lnVpm~tv~kn~tii~~ai~E~lf~~------~~~~~~v~~Sv~~m~~~s~~~~~--~d~s---------------- 153 (314)
T KOG1444|consen 98 LKYLNVPMFTVFKNLTIILTAIGEVLFFG------KRPSNKVWASVFAMIIGSVAAAF--TDLS---------------- 153 (314)
T ss_pred ccccCchHHHHHhhchHHHHHHhHHhhcC------cCchhhHHHHHHHHHHHHHhhcc--ccce----------------
Confidence 68999999999999999999999999985 56666669999988888766653 2211
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhhhhcC-ChhHHHHHHHHHHHHHHHHHHHHhccCc---ccc-cccchhhHHHHH
Q 024838 81 ENWLKGSILTVASCILWSSFYIMQAFTLKKYP-AKLSISAWMNCIGAAQSAVYTIIVQPKA---AAW-STTSGIDLWCII 155 (262)
Q Consensus 81 ~~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~ 155 (262)
. ...|+.+++..++.-+.+.+..|+..+... +...+..+..+.+...+.....+.++.. ... ...+...+..+.
T Consensus 154 f-~~~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~ 232 (314)
T KOG1444|consen 154 F-NLRGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVML 232 (314)
T ss_pred e-cchhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHH
Confidence 1 124899999999999999999998776552 5778899999999998888887665411 011 011234567777
Q ss_pred HHhhhhhhHHHHHHHHHHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhheecccCccc
Q 024838 156 YSGAVSSCLNLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGKEGDQH 231 (262)
Q Consensus 156 ~~gi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~~~~ 231 (262)
..++++.++.| +-.++.+..+++..++........+.+.+.++++++.++...+|..+-++|..++++.+.++++
T Consensus 233 lScv~gf~isy-~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~~~~k~ 307 (314)
T KOG1444|consen 233 LSCVMGFGISY-TSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYATFRKKK 307 (314)
T ss_pred HHHHHHHHHHH-HHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhhhhhcc
Confidence 77877767777 5559999999999999999999999999999999999999999999999999999988766654
No 28
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.32 E-value=2.7e-11 Score=103.89 Aligned_cols=138 Identities=13% Similarity=0.136 Sum_probs=111.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHhccCccccc--ccchhhHHHHHHHhh
Q 024838 82 NWLKGSILTVASCILWSSFYIMQAFTLKKYPAKLSISAWMNCIGAAQSAVYTIIVQPKAAAWS--TTSGIDLWCIIYSGA 159 (262)
Q Consensus 82 ~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~gi 159 (262)
+...|+++++++++.|+...+..|.. .+. ++....++++.++.+.+.++.....+ ..... ..+...+ .....+.
T Consensus 5 ~~~~g~~~~l~a~~~wg~~~~~~k~~-~~~-~~~~~~~~R~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~ 80 (296)
T PRK15430 5 QTRQGVLLALAAYFIWGIAPAYFKLI-YYV-PADEILTHRVIWSFFFMVVLMSICRQ-WSYLKTLIQTPQKI-FMLAVSA 80 (296)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHh-cCC-CHHHHHHHHHHHHHHHHHHHHHHHcc-HHHHHHHHcCHHHH-HHHHHHH
Confidence 44689999999999999999999774 566 89999999999998877776654321 11110 0012223 2233555
Q ss_pred hhhhHHHHHHHHHHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhhe
Q 024838 160 VSSCLNLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLL 223 (262)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~ 223 (262)
+..+..+.++++++++.+++.++++.++.|+++.++++++++|+++..+++|+++.+.|+.+..
T Consensus 81 ~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~ 144 (296)
T PRK15430 81 VLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQL 144 (296)
T ss_pred HHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 6777889999999999999999999999999999999999999999999999999999988765
No 29
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=99.30 E-value=3.2e-10 Score=96.25 Aligned_cols=209 Identities=12% Similarity=0.112 Sum_probs=144.6
Q ss_pred cccchhHHHHhhhchHHHHHHHHHHHhhhcccccCCCcchhhhhHHHHhHHHHHHHHhcCCCCCCCCCCCcccCCCcccc
Q 024838 2 KYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVHE 81 (262)
Q Consensus 2 ~~~s~~~a~~i~~~~pi~~~ll~~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (262)
.|.+++..++...+-.+.|+++.++++++|++++| |.++++.++|+.++-. +.+.. . ...+.....
T Consensus 114 ~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Q------w~Al~lL~~Gv~~vQ~-~~~~~-----~--~a~~~~~~~ 179 (345)
T KOG2234|consen 114 SNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQ------WMALVLLFAGVALVQL-PSLSP-----T--GAKSESSAQ 179 (345)
T ss_pred hcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHH------HHHHHHHHHHHHHHhc-cCCCC-----C--CccCCCccc
Confidence 46788999999999999999999999999999888 9999999999988842 11111 0 000012345
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCh-hHHHHHHHHHHHHHHHHHHHHhccCccccc-c---cchhhHHHHHH
Q 024838 82 NWLKGSILTVASCILWSSFYIMQAFTLKKYPAK-LSISAWMNCIGAAQSAVYTIIVQPKAAAWS-T---TSGIDLWCIIY 156 (262)
Q Consensus 82 ~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~ 156 (262)
+...|....+.+|+.-+...++.+|.+|....+ .-.+--..+++.+..+...+..+.+.-.|. . .+...|..++.
T Consensus 180 n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~d~~~i~~~gff~G~s~~vw~vVl~ 259 (345)
T KOG2234|consen 180 NPFLGLVAVLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTILLQDGEAINEYGFFYGYSSIVWLVVLL 259 (345)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhccccccccCCccccccHHHHHHHHH
Confidence 667899999999999999999999999876433 333333444455544444443332111111 1 11223333333
Q ss_pred HhhhhhhHHHHHHHHHHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhheecccCc
Q 024838 157 SGAVSSCLNLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGKEGD 229 (262)
Q Consensus 157 ~gi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~~ 229 (262)
.+ .+=.+....+++.+-..=+....+..+++.+.++.+++-++|....+|..+++.++.++...+.++
T Consensus 260 ~a-----~gGLlvs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~~~P~~~ 327 (345)
T KOG2234|consen 260 NA-----VGGLLVSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYSLYPARD 327 (345)
T ss_pred Hh-----ccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhhcCCccc
Confidence 33 333444555666666555666678899999999999999999999999999999999999544433
No 30
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=99.28 E-value=7.7e-11 Score=91.01 Aligned_cols=138 Identities=16% Similarity=0.223 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhc------CChhHHHHHHHHHHHHHHHHHHHHhccCcccccc--------c-chhh
Q 024838 86 GSILTVASCILWSSFYIMQAFTLKKY------PAKLSISAWMNCIGAAQSAVYTIIVQPKAAAWST--------T-SGID 150 (262)
Q Consensus 86 G~~l~l~a~~~~a~~~v~~~~~~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--------~-~~~~ 150 (262)
|.++++++.++.+++.++.|+..++. .++..+..+....+.+.+++..++.|+....... . ++..
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 67899999999999999999988772 2899999999999999999999887763211110 0 2244
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhhee
Q 024838 151 LWCIIYSGAVSSCLNLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLW 224 (262)
Q Consensus 151 ~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~ 224 (262)
+..++..|++. .+.....+..+++.+|...++...+..+..+++++++++|+++..+++|.++.+.|.++|+|
T Consensus 81 ~~~~~~~~~~~-~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy 153 (153)
T PF03151_consen 81 IFLLILSGLLA-FLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY 153 (153)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence 55555666544 45555777999999999999999999999999999999999999999999999999999875
No 31
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.27 E-value=6.7e-11 Score=99.31 Aligned_cols=136 Identities=13% Similarity=0.234 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHhccCc---ccccccchhh-HHHHHHHhhh
Q 024838 85 KGSILTVASCILWSSFYIMQAFTLKKYPAKLSISAWMNCIGAAQSAVYTIIVQPKA---AAWSTTSGID-LWCIIYSGAV 160 (262)
Q Consensus 85 ~G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~gi~ 160 (262)
.|.+++++++++|+...+..|. ..+. ++....+++++++.+.+.++.....+.. +.++...... +..+...|++
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~-~~~~-~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 79 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKL-LKPL-PATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLL 79 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHH-hccC-CHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHH
Confidence 3789999999999999999998 4557 9999999999999888777665432210 1111111222 3345555553
Q ss_pred hhhHHHHHHHHHHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhhe
Q 024838 161 SSCLNLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLL 223 (262)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~ 223 (262)
..+++.+++.+++++++..++.+.++.|+++.++++++++|+++.++++|.++.+.|+.+..
T Consensus 80 -~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~ 141 (256)
T TIGR00688 80 -IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNI 141 (256)
T ss_pred -HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 67889999999999999999999999999999999999999999999999999999988764
No 32
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=99.27 E-value=1.3e-10 Score=94.94 Aligned_cols=202 Identities=13% Similarity=0.106 Sum_probs=142.2
Q ss_pred HhhhchHHHHHHHHHHHhhhcccccCCCcchhhhhHHHHhHHHHHHHHhcCCCCCCCCCCCcccCCCcccchhhHHHHHH
Q 024838 11 AVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVHENWLKGSILT 90 (262)
Q Consensus 11 ~i~~~~pi~~~ll~~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~ 90 (262)
++.+-+++.+++++|++. ++|++..|+.++.+..+|+++......+...+..+..++++..+....+.+|+.+.
T Consensus 96 IfRsgsll~nM~~g~il~------~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~~~~~l~~~~~~~~~~~w~iGi~lL 169 (330)
T KOG1583|consen 96 IFRSGSLLANMILGWILL------GKRYSLRQYSSVLMITIGIIICTLFSSKDGRSKLSGLDSGSAQSDFFWWLIGIALL 169 (330)
T ss_pred EEecCcHHHHHHHHHHhc------cceeehhhhhhHHhhhhhheeEEeecCcchhhhhcccccCcccccchHHHHHHHHH
Confidence 345568899999999998 44555555999999999998877643333323233333333334456677899999
Q ss_pred HHHHHHHHHHHHHHHHhhhhcC-ChhHHHHHHHHHHHHHHHHHHHH-hc-----cCccccccc-----chhhHHHHHHHh
Q 024838 91 VASCILWSSFYIMQAFTLKKYP-AKLSISAWMNCIGAAQSAVYTII-VQ-----PKAAAWSTT-----SGIDLWCIIYSG 158 (262)
Q Consensus 91 l~a~~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~-~~-----~~~~~~~~~-----~~~~~~~~~~~g 158 (262)
..+-+.-|.-.+.++...+++. ++-...++..+++....+...-- .. ...+.+..+ -|..|..++.
T Consensus 170 ~~al~~sa~mgiyqE~~Y~kyGKh~~EalFytH~LsLP~Flf~~~div~~~~~~~~se~~~~p~~g~~vP~~~~yLl~-- 247 (330)
T KOG1583|consen 170 VFALLLSAYMGIYQETTYQKYGKHWKEALFYTHFLSLPLFLFMGDDIVSHWRLAFKSESYLIPLLGFKVPSMWVYLLF-- 247 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhccchHHHhcchHHHHHHHHhcCcceeccccCccccHHHHHHHH--
Confidence 9999999999999998888874 78899999999887665543210 00 011111111 1233443333
Q ss_pred hhhhhHHHHHHHHH----HhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhhe
Q 024838 159 AVSSCLNLFIQLWC----IEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLL 223 (262)
Q Consensus 159 i~~~~~~~~~~~~~----~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~ 223 (262)
..+.+....++ -.+.++..+++...+.-.+..+++.+.|+++++++-|+|+.+++.|.+++.
T Consensus 248 ---n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa 313 (330)
T KOG1583|consen 248 ---NVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFA 313 (330)
T ss_pred ---HHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHH
Confidence 33444444444 455667888999999999999999999999999999999999999988875
No 33
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=99.26 E-value=1e-11 Score=98.38 Aligned_cols=212 Identities=13% Similarity=0.175 Sum_probs=165.6
Q ss_pred CcccchhHHHHhhhchHHHHHHHHHHHhhhcccccCCCcchhhhhHHHHhHHHHHHHHhcCCCCCCCCCCCcccCCCccc
Q 024838 1 MKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVH 80 (262)
Q Consensus 1 l~~~s~~~a~~i~~~~pi~~~ll~~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~~~ 80 (262)
|||.+....+++.+++.+..+....+++|.|++.-+ +.+.++.+..-++-.+ +|.. ...-..
T Consensus 89 LqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl~------l~SFilMvlSS~va~w--~D~q----------~~~~~~ 150 (309)
T COG5070 89 LQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLE------LLSFILMVLSSVVATW--GDQQ----------ASAFKA 150 (309)
T ss_pred eeeeeeeHHHHhccceeehhHhhHHHHhcCccchhh------HHHHHHHHHHHHHhcc--chhh----------HHHHHh
Confidence 689999999999999999999999999999998888 8888777766655554 3221 000012
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhhhhcC-ChhHHHHHHHHHHHHHHHHHHHHhccCccc-ccc-cchhhHHHHHHH
Q 024838 81 ENWLKGSILTVASCILWSSFYIMQAFTLKKYP-AKLSISAWMNCIGAAQSAVYTIIVQPKAAA-WST-TSGIDLWCIIYS 157 (262)
Q Consensus 81 ~~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~ 157 (262)
.....|++|+...|+.-+.+....|+..+-.- .....+++...++..+++.+.+++|+..+. ... .+.....+++..
T Consensus 151 ~~lN~GY~Wm~~NclssaafVL~mrkri~ltNf~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~IS 230 (309)
T COG5070 151 QILNPGYLWMFTNCLSSAAFVLIMRKRIKLTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFIS 230 (309)
T ss_pred cccCCceEEEehhhHhHHHHHHHHHHhhcccccchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHH
Confidence 23457999999999999999999887654431 577889999999999999999988763222 111 123345567777
Q ss_pred hhhhhhHHHHHHHHHHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhheecccCccc
Q 024838 158 GAVSSCLNLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGKEGDQH 231 (262)
Q Consensus 158 gi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~~~~ 231 (262)
|+.+.+++| |-.|++|..+.+..+++..+.-.-..+.|.++++|+.+...+....+-..+..++.+.+.++++
T Consensus 231 gl~svgiSy-~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYavaks~k~q 303 (309)
T COG5070 231 GLCSVGISY-CSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVAKSKKQQ 303 (309)
T ss_pred HHHHhhhhh-ccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 775545554 8889999999999999999999999999999999999999999999988888888877765444
No 34
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.25 E-value=1.9e-10 Score=97.91 Aligned_cols=133 Identities=20% Similarity=0.256 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHhccCcccccccchhhHHHHHHHhhhhhhHHH
Q 024838 87 SILTVASCILWSSFYIMQAFTLKKYPAKLSISAWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAVSSCLNL 166 (262)
Q Consensus 87 ~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~ 166 (262)
.++.+.++++|+...+..|+..++. ++. ..+....+.+...++...... ...++... ..+......+.+.....+
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~~-~~~--~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~ 77 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADKE-PDF--LWWALLAHSVLLTPYGLWYLA-QVGWSRLP-ATFWLLLAISAVANMVYF 77 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCch-hHH--HHHHHHHHHHHHHHHHHHhcc-cCCCCCcc-hhhHHHHHHHHHHHHHHH
Confidence 4678999999999999999877765 443 355556666666666553211 12233222 334444444555778889
Q ss_pred HHHHHHHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhhee
Q 024838 167 FIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLW 224 (262)
Q Consensus 167 ~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~ 224 (262)
.++++++++.+++.++++.+.+|+++.++++++++|+++.++++|.++++.|+++...
T Consensus 78 ~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~ 135 (281)
T TIGR03340 78 LGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGL 135 (281)
T ss_pred HHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999988764
No 35
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.15 E-value=3e-10 Score=94.11 Aligned_cols=211 Identities=17% Similarity=0.179 Sum_probs=161.3
Q ss_pred CcccchhHHHHhhhchHHHHHHHHHHHhhhcccccCCCcchhhhhHHHHhHHHHHHHHhcCCCCCCCCCCCcccCCCccc
Q 024838 1 MKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVH 80 (262)
Q Consensus 1 l~~~s~~~a~~i~~~~pi~~~ll~~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~~~ 80 (262)
|+|.|=..-.+-.++-.+-+++...++.|.|.+..+ .....+.-.|+.+.... +.. +..+++..
T Consensus 104 LKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~e------Yl~~~LIs~GvsiF~l~--~~s--------~s~~~~g~ 167 (327)
T KOG1581|consen 104 LKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFE------YLVAFLISLGVSIFSLF--PNS--------DSSSKSGR 167 (327)
T ss_pred HHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcHH------HHHHHHHHhheeeEEEe--cCC--------CCccccCC
Confidence 355555555666677778889999999866666666 88888888888776642 211 01222344
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhhhhcC-ChhHHHHHHHHHHHHHHHHHHHHhccCcc--cccccchhhHHHHHHH
Q 024838 81 ENWLKGSILTVASCILWSSFYIMQAFTLKKYP-AKLSISAWMNCIGAAQSAVYTIIVQPKAA--AWSTTSGIDLWCIIYS 157 (262)
Q Consensus 81 ~~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 157 (262)
++...|+.++...-.+-+..+..+.++.+++. ++..++....+++.+..+...+......+ .+..-.+..+.-++..
T Consensus 168 ~ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~hp~~~~Di~l~ 247 (327)
T KOG1581|consen 168 ENSPIGILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKEHPDVAFDILLY 247 (327)
T ss_pred CCchHhHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHcChhHHHHHHHH
Confidence 56678999999999999999999999988775 78999999999999988888553322111 1111234445555555
Q ss_pred hhhhhhHHHHHHHHHHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhheecccC
Q 024838 158 GAVSSCLNLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGKEG 228 (262)
Q Consensus 158 gi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~ 228 (262)
.. ++++++.+.+.-+++-|+...+.++.+.-.++++++.+.++.+++..||+|..+++.|+.+-.+.+++
T Consensus 248 s~-~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~~k~~ 317 (327)
T KOG1581|consen 248 ST-CGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEILLKKK 317 (327)
T ss_pred HH-hhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHHHHHHh
Confidence 54 67899999999999999999999999999999999999999999999999999999999996655554
No 36
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=99.11 E-value=1.7e-09 Score=80.76 Aligned_cols=122 Identities=17% Similarity=0.149 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHhccCcccccccchhhHHHHHHHhhhhhhH
Q 024838 85 KGSILTVASCILWSSFYIMQAFTLKKYPAKLSISAWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAVSSCL 164 (262)
Q Consensus 85 ~G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~ 164 (262)
.|+++.+.+.++-+...++.|+..++.+ ....... .. ...... . +....++.|+++.++
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g-~~~~~~~--~~----~~~~~~-~-------------~p~~~i~lgl~~~~l 60 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGMSRLP-LLSHAWD--FI----AALLAF-G-------------LALRAVLLGLAGYAL 60 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhCC-CccchhH--HH----HHHHHH-h-------------ccHHHHHHHHHHHHH
Confidence 3678899999999999999999888763 2221111 00 000001 0 112246778889999
Q ss_pred HHHHHHHHHhhcCceeeeehhchHHHHHHHHHHH--HhccccchhhHhHHHHHHHHHhhheeccc
Q 024838 165 NLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYF--LVGEKLHTGCILGGLIVIIGLYSLLWGKE 227 (262)
Q Consensus 165 ~~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~--~~~e~~~~~~~~G~~li~~g~~l~~~~~~ 227 (262)
++.+|.+++++.+.+.+..+....+++..+.++. +++|++++.+++|.+++++|+++..++++
T Consensus 61 a~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~~ 125 (129)
T PRK02971 61 SMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTT 125 (129)
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCC
Confidence 9999999999999999999999998888888885 89999999999999999999999886544
No 37
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.10 E-value=1.5e-09 Score=95.06 Aligned_cols=139 Identities=11% Similarity=0.075 Sum_probs=115.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHhccCcccccccchhhHHHHHHHhhhhhh
Q 024838 84 LKGSILTVASCILWSSFYIMQAFTLKKYPAKLSISAWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAVSSC 163 (262)
Q Consensus 84 ~~G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~ 163 (262)
..-++.+++.=++|+.+.++.|..++..-++....++++.+++++++++....++. ..++..+...|..+..+|++. .
T Consensus 12 ~~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~-~~~~~~~~~~~~~l~l~g~~g-~ 89 (358)
T PLN00411 12 AVFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRS-RSLPPLSVSILSKIGLLGFLG-S 89 (358)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHh-cccCcchHHHHHHHHHHHHHH-H
Confidence 35678888889999999999999998776999999999999999999988755431 111111234566777777765 5
Q ss_pred HHHHHHHHHHhhcCceeeeehhchHHHHHHHHHHHH------hccccchhhHhHHHHHHHHHhhhee
Q 024838 164 LNLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFL------VGEKLHTGCILGGLIVIIGLYSLLW 224 (262)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~------~~e~~~~~~~~G~~li~~g~~l~~~ 224 (262)
+.+.+++.++++++++.++++.++.|+++.++++++ ++|+++..+++|.++.++|+.+...
T Consensus 90 ~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~ 156 (358)
T PLN00411 90 MYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIF 156 (358)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 666789999999999999999999999999999999 6999999999999999999888664
No 38
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=99.06 E-value=8.9e-10 Score=90.28 Aligned_cols=205 Identities=15% Similarity=0.148 Sum_probs=149.0
Q ss_pred CcccchhHHHHhhhchHHHHHHHHHHHhhhcccccCCCcchhhhhHHHHhHHHHHHHHhcCCCCCCCCCCCcccCCCccc
Q 024838 1 MKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVH 80 (262)
Q Consensus 1 l~~~s~~~a~~i~~~~pi~~~ll~~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~~~ 80 (262)
|.+|+++.-+++....-+|+.+++.-+++.+++.++ |+|+....+|++++.. .|.. ...++. ...
T Consensus 107 L~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~q------Wl~i~fv~lGlviVg~--~d~~----~~~~p~---~d~ 171 (372)
T KOG3912|consen 107 LNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQ------WLGILFVSLGLVIVGS--LDVH----LVTDPY---TDY 171 (372)
T ss_pred HHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhh------HHHHHHHHhhhheeee--eecc----cccCCc---ccc
Confidence 468999999999999999999999999999999999 9999999999887753 2111 000000 012
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhhhhcC-ChhHHHHHHHHHHHHHHHHHHHHhc----c-C----ccc-ccc----
Q 024838 81 ENWLKGSILTVASCILWSSFYIMQAFTLKKYP-AKLSISAWMNCIGAAQSAVYTIIVQ----P-K----AAA-WST---- 145 (262)
Q Consensus 81 ~~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~----~-~----~~~-~~~---- 145 (262)
.+...|+++.+++=+.-|...++-+|.+++.. +|.....|...++.+++...+...- + . .+. +..
T Consensus 172 s~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~eD~~~~ 251 (372)
T KOG3912|consen 172 SSIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVLEDWGDA 251 (372)
T ss_pred ccchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcchhhHHHH
Confidence 44568999999999999999999988888774 7899999999998666555544321 1 1 000 110
Q ss_pred ---cchhhHHHHHHHhhhhhhHHHHHHH----HHHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHH
Q 024838 146 ---TSGIDLWCIIYSGAVSSCLNLFIQL----WCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIG 218 (262)
Q Consensus 146 ---~~~~~~~~~~~~gi~~~~~~~~~~~----~~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g 218 (262)
.....-+.+...| ...+..++| .--+..+++.=.++-.+...+..+++..+..|.++..|+.|.++.+.|
T Consensus 252 ~~~~~e~p~l~val~~---~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqilGFliLi~G 328 (372)
T KOG3912|consen 252 FAALQESPSLAVALIG---FTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGFLILIMG 328 (372)
T ss_pred HHHhcCCchhHHHHhh---hhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0001112222222 233333444 335667778888888999999999999999999999999999999999
Q ss_pred Hhhhe
Q 024838 219 LYSLL 223 (262)
Q Consensus 219 ~~l~~ 223 (262)
+++++
T Consensus 329 i~lY~ 333 (372)
T KOG3912|consen 329 IILYN 333 (372)
T ss_pred HHHHH
Confidence 99986
No 39
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.05 E-value=8.5e-11 Score=95.87 Aligned_cols=209 Identities=14% Similarity=0.091 Sum_probs=157.2
Q ss_pred CcccchhHHHHhhhchHHHHHHHHHHHhhhcccccCCCcchhhhhHHHHhHHHHHHHHhcCCCCCCCCCCCcccCCCccc
Q 024838 1 MKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVH 80 (262)
Q Consensus 1 l~~~s~~~a~~i~~~~pi~~~ll~~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~~~ 80 (262)
|+|.+.++..+=..+..+|+.+++++++|+|-+... ..++.+.+.| ..+.. |.+.. ++
T Consensus 123 L~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~------~~~C~lIi~G-F~lGv-dqE~~--------------~~ 180 (347)
T KOG1442|consen 123 LKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFA------LGCCLLIILG-FGLGV-DQEGS--------------TG 180 (347)
T ss_pred hhhcceEEEEeccchhhhHHHHhHHhhccccccccc------ceeehhheeh-heecc-ccccc--------------cC
Confidence 467777777777788999999999999999988776 6666666666 33322 22211 22
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhhhhcC-ChhHHHHHHHHHHHHHHHHHHHHhccCcc--cccc-cchhhHHHHHH
Q 024838 81 ENWLKGSILTVASCILWSSFYIMQAFTLKKYP-AKLSISAWMNCIGAAQSAVYTIIVQPKAA--AWST-TSGIDLWCIIY 156 (262)
Q Consensus 81 ~~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~ 156 (262)
.-...|.++.+.+.++-|+..+..|+...... ....+.+++...+.+..+|...+...-.. .++. +....|+.+..
T Consensus 181 ~ls~~GvifGVlaSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtL 260 (347)
T KOG1442|consen 181 TLSWIGVIFGVLASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTL 260 (347)
T ss_pred ccchhhhHHHHHHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHH
Confidence 23347999999999999999999987665542 46788999999999999999886543111 1111 23456777777
Q ss_pred HhhhhhhHHHHHHHHHHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhheecccCcccc
Q 024838 157 SGAVSSCLNLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGKEGDQHC 232 (262)
Q Consensus 157 ~gi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~~~~~ 232 (262)
.|+++..++|.. .+=+|..+|..-++-..-.-..-.+++..+++|.-+...|-|-.+++.|..++++.|..+.++
T Consensus 261 sglfgF~mgyvT-g~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk~~em~~ 335 (347)
T KOG1442|consen 261 SGLFGFAMGYVT-GWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVKEHEMRK 335 (347)
T ss_pred HHHHHHHhhhee-eEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHHHHHHHh
Confidence 777666666533 355788888888888888888899999999999999999999999999999999887666553
No 40
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.01 E-value=7.6e-09 Score=88.58 Aligned_cols=133 Identities=11% Similarity=0.033 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHhccCcccccccchhhHHHHHHHhhhhhhH
Q 024838 85 KGSILTVASCILWSSFYIMQAFTLKKYPAKLSISAWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAVSSCL 164 (262)
Q Consensus 85 ~G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~ 164 (262)
.-.+..++..+.|+...+..|...... +|....++++.+++++++++......+ . ...+++......|++....
T Consensus 8 ~~~~~~~~~~~iWg~~~~~~K~~~~~~-~p~~~~~~R~~~a~l~ll~~~~~~~~~---~--~~~~~~~~~~~~g~~~~~~ 81 (292)
T PRK11272 8 PLFGALFALYIIWGSTYLVIRIGVESW-PPLMMAGVRFLIAGILLLAFLLLRGHP---L--PTLRQWLNAALIGLLLLAV 81 (292)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhccC-CHHHHHHHHHHHHHHHHHHHHHHhCCC---C--CcHHHHHHHHHHHHHHHHH
Confidence 345678888999999999999888777 999999999999999988876643221 1 1244566667777766666
Q ss_pred HHHHHHHHH-hhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhhee
Q 024838 165 NLFIQLWCI-EQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLW 224 (262)
Q Consensus 165 ~~~~~~~~~-~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~ 224 (262)
.+.+++.+. ++.+++.++++.++.|+++.+++++ ++|+++..+++|..+.+.|+.+...
T Consensus 82 ~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~ 141 (292)
T PRK11272 82 GNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNS 141 (292)
T ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhc
Confidence 778888888 9999999999999999999999986 7999999999999999999988764
No 41
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.00 E-value=4.7e-09 Score=88.09 Aligned_cols=119 Identities=10% Similarity=0.010 Sum_probs=99.1
Q ss_pred HHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHhccCcccccccchhhHHHHHHHhhhhhhHHHHHHHHHHhhc
Q 024838 97 WSSFYIMQAFTLKKYPAKLSISAWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAVSSCLNLFIQLWCIEQR 176 (262)
Q Consensus 97 ~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~ 176 (262)
|+...+..|...+...++....++++..+.+.+.+..... .+..++......+.++..+.+.+++.++++.
T Consensus 1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~---------~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~ 71 (260)
T TIGR00950 1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRRR---------PPLKRLLRLLLLGALQIGVFYVLYFVAVKRL 71 (260)
T ss_pred CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhc---------cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556677787776655888888888888888777654421 1344666777778778889999999999999
Q ss_pred CceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhhee
Q 024838 177 GPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLW 224 (262)
Q Consensus 177 ~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~ 224 (262)
+++.++++..++|+++.+++.++++|+++..+++|+.+.+.|+.+...
T Consensus 72 ~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~ 119 (260)
T TIGR00950 72 PVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLS 119 (260)
T ss_pred ChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhcc
Confidence 999999999999999999999999999999999999999999988763
No 42
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=98.98 E-value=3.8e-09 Score=82.45 Aligned_cols=201 Identities=15% Similarity=0.197 Sum_probs=143.3
Q ss_pred CcccchhHHHHhhhchHHHHHHHHHHHhhhcccccCCCcchhhhhHHHHhHHHHHHHHhcCCCCCCCCCCCcccCCCccc
Q 024838 1 MKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVH 80 (262)
Q Consensus 1 l~~~s~~~a~~i~~~~pi~~~ll~~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~~~ 80 (262)
|+..+++.++.+.++..-|+.+++|+.+|+|+.--+ +.+.++++.|++++.. .|+. .
T Consensus 74 L~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~k------IlaailAI~GiVmiay--~DN~---------------~ 130 (290)
T KOG4314|consen 74 LKKISASDASAIFACNAAFVFILAIIVLGDRFMGFK------ILAAILAIGGIVMIAY--ADNE---------------H 130 (290)
T ss_pred HHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhh------HHHHHHHhCcEEEEEe--ccch---------------h
Confidence 356789999999999999999999999999998887 9999999999988864 2222 2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHH---H-HHHHHHHHHhccCcccccccchhhHHHHHH
Q 024838 81 ENWLKGSILTVASCILWSSFYIMQAFTLKKYPAKLSISAWMNCIG---A-AQSAVYTIIVQPKAAAWSTTSGIDLWCIIY 156 (262)
Q Consensus 81 ~~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~---~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (262)
..-..|+.+++.++.+.|.|.+.-|+...+. +--...-++...+ . +...+-..+.-.+.+.|.......|..+..
T Consensus 131 a~e~iGi~~AV~SA~~aAlYKV~FK~~iGnA-n~Gdaa~FmS~LGF~NL~~~~~~~lIL~~T~VE~~qsFA~~PWG~l~G 209 (290)
T KOG4314|consen 131 ADEIIGIACAVGSAFMAALYKVLFKMFIGNA-NFGDAAHFMSCLGFFNLCFISFPALILAFTGVEHLQSFAAAPWGCLCG 209 (290)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhccC-cchhHHHHHHHHHHHHHHHHhhhHHHHHHhchHHHHHHhhCCchhhhh
Confidence 2235899999999999999999999888765 3221111111111 1 122222222222223343223445888877
Q ss_pred HhhhhhhHHHHHHHHHHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhheecc
Q 024838 157 SGAVSSCLNLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGK 226 (262)
Q Consensus 157 ~gi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~ 226 (262)
.+.+..+..+ +.+.++..+.|...++-+....+.-...+.++-+-..+.....|.+++..|..++...+
T Consensus 210 ~A~L~lAFN~-~iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLiiiP~ 278 (290)
T KOG4314|consen 210 AAGLSLAFNF-LINFGIALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILIIIPE 278 (290)
T ss_pred HHHHHHHHhh-heeehhhhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHheeccc
Confidence 7765554444 56688888899988888888888888888876666668888899999999988877543
No 43
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.97 E-value=2.9e-09 Score=78.02 Aligned_cols=108 Identities=13% Similarity=0.243 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHHHHHhccCcccccccchhhHHHHHHHhhhhhhHHHHHHHHHHhhcCceeeeehhchHHHHHHHHHHH
Q 024838 119 AWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAVSSCLNLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYF 198 (262)
Q Consensus 119 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~ 198 (262)
.++...+.+....+.....+-.+.++......+.+++..|++....++.++.++.++.++ .+..+..++|+++.+++++
T Consensus 2 a~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~ 80 (113)
T PF13536_consen 2 AFRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWL 80 (113)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHH
Confidence 356667777777666643221111121112445666666776666899999999999995 8889999999999999999
Q ss_pred HhccccchhhHhHHHHHHHHHhhheeccc
Q 024838 199 LVGEKLHTGCILGGLIVIIGLYSLLWGKE 227 (262)
Q Consensus 199 ~~~e~~~~~~~~G~~li~~g~~l~~~~~~ 227 (262)
+++|+++..++.|..+++.|+.++.+.+.
T Consensus 81 ~~~er~~~~~~~a~~l~~~Gv~li~~~~~ 109 (113)
T PF13536_consen 81 FFKERLSPRRWLAILLILIGVILIAWSDL 109 (113)
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHHhhhhc
Confidence 99999999999999999999999887553
No 44
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=98.96 E-value=7.8e-09 Score=84.45 Aligned_cols=197 Identities=12% Similarity=0.172 Sum_probs=151.5
Q ss_pred HHHhhhchHHHHHHHHHHHhhhcccccCCCcchhhhhHHHHhHHHHHHHHhcCCCCCCCCCCCcccCCCcccchhhHHHH
Q 024838 9 MTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVHENWLKGSI 88 (262)
Q Consensus 9 a~~i~~~~pi~~~ll~~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 88 (262)
-.++.++--+-+++.+.++- .+|+++-...+..+...|.++....|..- +++-...|.+
T Consensus 135 QviFKccKliPVmiggifIq------GkRY~v~d~~aA~lm~lGli~FTLADs~~---------------sPNF~~~Gv~ 193 (367)
T KOG1582|consen 135 QVIFKCCKLIPVMIGGIFIQ------GKRYGVHDYIAAMLMSLGLIWFTLADSQT---------------SPNFNLIGVM 193 (367)
T ss_pred HHHHHhhhhhhhhheeeeec------cccccHHHHHHHHHHHHHHHhhhhccccc---------------CCCcceeeHH
Confidence 34555666666666677664 66677777999999999998888632211 1222347898
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcC-ChhHHHHHHHHHHHHHHHHHHHHhccCcccccc---cchhhHHHHHHHhhhhhhH
Q 024838 89 LTVASCILWSSFYIMQAFTLKKYP-AKLSISAWMNCIGAAQSAVYTIIVQPKAAAWST---TSGIDLWCIIYSGAVSSCL 164 (262)
Q Consensus 89 l~l~a~~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~gi~~~~~ 164 (262)
+.-.+-++-|.-..++++.++..+ +...+.++...++.+.++..+.+...-++.|.. ++-+.+...++... .+.+
T Consensus 194 mIsgALl~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~tyGy~~~~s~-~gyl 272 (367)
T KOG1582|consen 194 MISGALLADAVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVRTYGYAFLFSL-AGYL 272 (367)
T ss_pred HHHHHHHHHHHhhHHHHHHHhhCCCCcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHhHHHHHHHHHH-HhHh
Confidence 888888999999999999998886 677888999999999888888865543333331 22234454444443 6678
Q ss_pred HHHHHHHHHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhheeccc
Q 024838 165 NLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGKE 227 (262)
Q Consensus 165 ~~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~ 227 (262)
+.......++..|+..+..+....-.+++++++++|..++|....-|..+++.|+++-.+.|.
T Consensus 273 G~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk~ 335 (367)
T KOG1582|consen 273 GIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSKR 335 (367)
T ss_pred hHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccCC
Confidence 888888999999999999999999999999999999999999999999999999999887773
No 45
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=98.96 E-value=3.6e-09 Score=86.96 Aligned_cols=205 Identities=10% Similarity=0.055 Sum_probs=127.6
Q ss_pred chhHHHHhhhchHHHHHHHHHHHhhhcccccCCCcchhhhhHHHHhHHHHHHHHhc-----------CCCCCCCCCCCcc
Q 024838 5 HPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYK-----------GPAVPSLKGAPIH 73 (262)
Q Consensus 5 s~~~a~~i~~~~pi~~~ll~~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~~l~~~~-----------~~~~~~~~~~~~~ 73 (262)
+......+.+..++++++..+.+.++|.+..+ +++..+...|++...+.+ +-...+..+ .
T Consensus 3 svPa~~~~~s~~l~~v~l~~~~~~~~~~~~~~------i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~---~ 73 (222)
T TIGR00803 3 SVPIHIIFKQNNLVLIALGNLLAAGKQVTQLK------ILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQ---S 73 (222)
T ss_pred cccchHHHHhcchHHHHHhcccccceeeehHH------HHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCC---C
Confidence 34556678889999999999999988777555 999999999987543311 100000000 0
Q ss_pred cCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCChhHH-HHHHHHHHHHHHHHHHHHhccCc-cccc--ccchh
Q 024838 74 LGTNSVHENWLKGSILTVASCILWSSFYIMQAFTLKKYPAKLSI-SAWMNCIGAAQSAVYTIIVQPKA-AAWS--TTSGI 149 (262)
Q Consensus 74 ~~~~~~~~~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~-~~~~--~~~~~ 149 (262)
.+......+...|..+.+.++.+-+...+.+++..|+.+..... .....+.+.+...........+. ..+. ...+.
T Consensus 74 ~~~~~~~g~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (222)
T TIGR00803 74 SAKTLMFGNPVVGLSAVLSALLSSGFAGVYFEKILKDGDTMFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFIGYPT 153 (222)
T ss_pred CccccccccHHHHHHHHHHHHHHHhhhHHHHHHcccCCCCchHHHHHHHHHHHHHHHHHHHhhcccchhhccCcccCCch
Confidence 00000112445677778888888888888988876665221111 11122222222111111111110 0111 00111
Q ss_pred hHHHHHHHhhhhhhHHHHHHHHHHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhh
Q 024838 150 DLWCIIYSGAVSSCLNLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSL 222 (262)
Q Consensus 150 ~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~ 222 (262)
..+.+. +..+++..+..+.+++.++...+....++++++.++++++++|+++..+++|+.+++.|++++
T Consensus 154 ~~~~~~----~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~lY 222 (222)
T TIGR00803 154 AVWIVG----LLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFLY 222 (222)
T ss_pred HHHHHH----HHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEeC
Confidence 112111 234566678889999999999999999999999999999999999999999999999998764
No 46
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=98.95 E-value=1.5e-08 Score=86.99 Aligned_cols=127 Identities=16% Similarity=0.230 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHhccCcccccccchhhHHHHHHHhhhhhhHHH
Q 024838 87 SILTVASCILWSSFYIMQAFTLKKYPAKLSISAWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAVSSCLNL 166 (262)
Q Consensus 87 ~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~ 166 (262)
.++++++++.|+...+..|...+.. +|....++++.++++..+++.. .++ . .+..+...|+......+
T Consensus 6 ~l~~l~~~~~Wg~~~~~~k~~~~~~-~p~~~~~~R~~~a~~~l~~~~~--~~~---~------~~~~~~~~g~~~~~~~~ 73 (299)
T PRK11453 6 GVLALLVVVVWGLNFVVIKVGLHNM-PPLMLAGLRFMLVAFPAIFFVA--RPK---V------PLNLLLGYGLTISFGQF 73 (299)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHhc--CCC---C------chHHHHHHHHHHHHHHH
Confidence 3568899999999999999888887 9999999999998766554331 111 1 12223333443334455
Q ss_pred HHHHHHHhh-cCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhheec
Q 024838 167 FIQLWCIEQ-RGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWG 225 (262)
Q Consensus 167 ~~~~~~~~~-~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~ 225 (262)
.+++.+.++ .+++.++++.++.|+++.++++++++|+++..+++|.++.++|+.+..+.
T Consensus 74 ~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~ 133 (299)
T PRK11453 74 AFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIED 133 (299)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccc
Confidence 566778887 57889999999999999999999999999999999999999999887743
No 47
>PRK11689 aromatic amino acid exporter; Provisional
Probab=98.91 E-value=2.6e-08 Score=85.36 Aligned_cols=131 Identities=15% Similarity=0.156 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHhccCcccccccchhhHHHHHHHhhhhhhH
Q 024838 85 KGSILTVASCILWSSFYIMQAFTLKKYPAKLSISAWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAVSSCL 164 (262)
Q Consensus 85 ~G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~ 164 (262)
.+++++++++++|+...+..|...+.. +|....++++..++++++++.. .+ ..+. ..+..+ ..+.+....
T Consensus 4 ~~~l~~l~a~~~Wg~~~~~~k~~~~~~-~P~~~~~~R~~~a~l~l~~~~~--~~---~~~~---~~~~~~-~~~~l~~~~ 73 (295)
T PRK11689 4 KATLIGLIAILLWSTMVGLIRGVSESL-GPVGGAAMIYSVSGLLLLLTVG--FP---RLRQ---FPKRYL-LAGGLLFVS 73 (295)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHccC-ChHHHHHHHHHHHHHHHHHHcc--cc---cccc---ccHHHH-HHHhHHHHH
Confidence 467889999999999999999988888 9999999999999888776531 11 1111 111122 223333344
Q ss_pred HHHHHHHHHh----hcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhheec
Q 024838 165 NLFIQLWCIE----QRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWG 225 (262)
Q Consensus 165 ~~~~~~~~~~----~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~ 225 (262)
.+.+++.+++ ..++..++++.++.|+++.++++++++|+++..+++|+++.++|+.+....
T Consensus 74 ~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~ 138 (295)
T PRK11689 74 YEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGG 138 (295)
T ss_pred HHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecC
Confidence 4455555654 457778889999999999999999999999999999999999999887743
No 48
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.83 E-value=5.4e-08 Score=83.68 Aligned_cols=121 Identities=14% Similarity=0.107 Sum_probs=96.7
Q ss_pred HHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHhccCcccccccchhhHHHHHHHhhhhhhHHHHHHHHHHhhcCc
Q 024838 99 SFYIMQAFTLKKYPAKLSISAWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAVSSCLNLFIQLWCIEQRGP 178 (262)
Q Consensus 99 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~ 178 (262)
.+++++|...+..+.|......++..+.+...+.......+ .+..+..+|..++..|++ ..+.+.+.+.++++.++
T Consensus 16 ~~~~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~l~~~s~ 91 (302)
T TIGR00817 16 YFNIYNKKLLNVFPYPYFKTLISLAVGSLYCLLSWSSGLPK---RLKISSALLKLLLPVAIV-HTIGHVTSNVSLSKVAV 91 (302)
T ss_pred HHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHHhCCCC---CCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHhccH
Confidence 34456788888766899999999988877655542111111 111235578888888876 47888999999999999
Q ss_pred eeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhhe
Q 024838 179 VFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLL 223 (262)
Q Consensus 179 ~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~ 223 (262)
+.++++..+.|+++.++++++++|+++..+++|..++++|+.+..
T Consensus 92 s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~ 136 (302)
T TIGR00817 92 SFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALAS 136 (302)
T ss_pred HHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhc
Confidence 999999999999999999999999999999999999999998754
No 49
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.72 E-value=8.2e-08 Score=69.92 Aligned_cols=69 Identities=19% Similarity=0.046 Sum_probs=62.9
Q ss_pred HHhhhhhhHHHHHHHHHHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhhee
Q 024838 156 YSGAVSSCLNLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLW 224 (262)
Q Consensus 156 ~~gi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~ 224 (262)
..++++.++++.++..++++++.+.+-.+..+.++++.+++++++||++++.+++|.++++.|+++...
T Consensus 41 ~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~~ 109 (111)
T PRK15051 41 GLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILGS 109 (111)
T ss_pred HHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 344466788999999999999999999999999999999999999999999999999999999988653
No 50
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=98.71 E-value=1e-06 Score=73.41 Aligned_cols=185 Identities=16% Similarity=0.154 Sum_probs=123.6
Q ss_pred hchHHHHHHHHHHHhhhcccccCCCcchhhhhHHHHhHHHHHHHHhcCCCCCCCCCCCcccCCCcccchhhHHHHHHHHH
Q 024838 14 NTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVHENWLKGSILTVAS 93 (262)
Q Consensus 14 ~~~pi~~~ll~~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a 93 (262)
.++-+.+.++++++|+|.-+.+++ . .=..++++.++|+.+.... ++.. +..+++.+...|++..+++
T Consensus 80 g~QLvg~sl~gv~~fgEW~~~~~~-~-~G~~Al~liiiGv~lts~~-~~~~----------~~~~~~~~~~kgi~~Ll~s 146 (269)
T PF06800_consen 80 GLQLVGTSLIGVLFFGEWTTTTQK-I-IGFLALVLIIIGVILTSYQ-DKKS----------DKSSSKSNMKKGILALLIS 146 (269)
T ss_pred hHHHHHHHHHHHhhcCCCCCcchH-H-HHHHHHHHHHHHHHHhccc-cccc----------cccccccchhhHHHHHHHH
Confidence 366677899999999999987762 0 1123677777887766542 2111 0001234556899999999
Q ss_pred HHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHhccCcccccccchhhHHHHHHHhhhhhhHHHHHHHHHH
Q 024838 94 CILWSSFYIMQAFTLKKYPAKLSISAWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAVSSCLNLFIQLWCI 173 (262)
Q Consensus 94 ~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~ 173 (262)
.+.|..|.++.|. .+. ++.+...-+.+.-.+....+..+. ++ ..++ ...|.. +..|+ .-.++-.++..+.
T Consensus 147 tigy~~Y~~~~~~--~~~-~~~~~~lPqaiGm~i~a~i~~~~~-~~-~~~~---k~~~~n-il~G~-~w~ignl~~~is~ 216 (269)
T PF06800_consen 147 TIGYWIYSVIPKA--FHV-SGWSAFLPQAIGMLIGAFIFNLFS-KK-PFFE---KKSWKN-ILTGL-IWGIGNLFYLISA 216 (269)
T ss_pred HHHHHHHHHHHHh--cCC-ChhHhHHHHHHHHHHHHHHHhhcc-cc-cccc---cchHHh-hHHHH-HHHHHHHHHHHhH
Confidence 9999999999766 334 666665555444444334443322 21 1111 222222 33343 3356777888999
Q ss_pred hhcCceeeeehhchHHHHHHHHHHHHhccccchhhH----hHHHHHHHHHhh
Q 024838 174 EQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCI----LGGLIVIIGLYS 221 (262)
Q Consensus 174 ~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~----~G~~li~~g~~l 221 (262)
++.|.+..=.+.-+.++++.+.+.+++||+=+..++ +|+++++.|.++
T Consensus 217 ~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~il 268 (269)
T PF06800_consen 217 QKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAIL 268 (269)
T ss_pred HhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence 999999999999999999999999999998876654 688888888764
No 51
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.69 E-value=5e-07 Score=79.33 Aligned_cols=126 Identities=13% Similarity=0.087 Sum_probs=96.4
Q ss_pred HHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHhccCcccccccchhhHHHHHHHhhhhhhHHHHHHHHHHhhcC
Q 024838 98 SSFYIMQAFTLKKYPAKLSISAWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAVSSCLNLFIQLWCIEQRG 177 (262)
Q Consensus 98 a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~ 177 (262)
..+.+.+|..++..|-|..+..+++.++.+.+.........+.+... .....+..++.+|++.. ..+...+.++++.+
T Consensus 62 ~~~~~~nK~vl~~~~~P~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~llp~gl~~~-~~~~~~~~sl~~~s 139 (350)
T PTZ00343 62 VLYVVDNKLALNMLPLPWTISSLQLFVGWLFALLYWATGFRKIPRIK-SLKLFLKNFLPQGLCHL-FVHFGAVISMGLGA 139 (350)
T ss_pred HHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC-CHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcc
Confidence 44566788888888339999999999998776554332111111111 02335666777777554 45667779999999
Q ss_pred ceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhheec
Q 024838 178 PVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWG 225 (262)
Q Consensus 178 ~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~ 225 (262)
++.++++..++|++++++++++++|+++..++.|.+++++|+.+....
T Consensus 140 vs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~ 187 (350)
T PTZ00343 140 VSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVK 187 (350)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecc
Confidence 999999999999999999999999999999999999999999997643
No 52
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=98.65 E-value=2.6e-07 Score=76.69 Aligned_cols=140 Identities=11% Similarity=0.154 Sum_probs=116.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHhccCccccc-ccchhhHHHHHHHhhhhh
Q 024838 84 LKGSILTVASCILWSSFYIMQAFTLKKYPAKLSISAWMNCIGAAQSAVYTIIVQPKAAAWS-TTSGIDLWCIIYSGAVSS 162 (262)
Q Consensus 84 ~~G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~gi~~~ 162 (262)
..|+++.+.+-+.|+....+.|. .+.. ++....+.+.+++.+..+.+..+..+...-+. ..+++.+......+++.
T Consensus 6 ~~Gil~~l~Ay~lwG~lp~y~kl-l~~~-~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~li- 82 (293)
T COG2962 6 RKGILLALLAYLLWGLLPLYFKL-LEPL-PATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALLI- 82 (293)
T ss_pred cchhHHHHHHHHHHHHHHHHHHH-HccC-CHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHHH-
Confidence 47999999999999999998877 5555 89999999999999998888776544222222 23456677777777644
Q ss_pred hHHHHHHHHHHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhheecc
Q 024838 163 CLNLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGK 226 (262)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~ 226 (262)
...+.+|.++.++.....+|+=.++.|.+.+++|.++++|+++..|++..++..+|+....+..
T Consensus 83 ~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~ 146 (293)
T COG2962 83 GLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLL 146 (293)
T ss_pred HHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHc
Confidence 6899999999999999999999999999999999999999999999999999999987765443
No 53
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.57 E-value=1.1e-06 Score=75.19 Aligned_cols=132 Identities=16% Similarity=0.127 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHhccCcccccccchhhHHHHHHHhhhhhhHH
Q 024838 86 GSILTVASCILWSSFYIMQAFTLKKYPAKLSISAWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAVSSCLN 165 (262)
Q Consensus 86 G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~ 165 (262)
+++++++++++|+...+..|+.. .. ++.... ...++.++...+..+...+ ... .+..+..-...|+ .-.++
T Consensus 2 ~~l~~lia~~~wGs~g~~~k~~~-g~-~~~~~~--~~~~g~l~~~~~~~~~~~~--~~~--~~~~~~~g~l~G~-~w~ig 72 (290)
T TIGR00776 2 DILIALIPALFWGSFVLINVKIG-GG-PYSQTL--GTTFGALILSIAIAIFVLP--EFW--ALSIFLVGLLSGA-FWALG 72 (290)
T ss_pred chHHHHHHHHHHhhhHHHHhccC-CC-HHHHHH--HHHHHHHHHHHHHHHHhCC--ccc--ccHHHHHHHHHHH-HHHhh
Confidence 57889999999999999998855 33 333322 4555555555444433221 111 1222332333333 35678
Q ss_pred HHHHHHHHhhcCceeeeehhc-hHHHHHHHHHHHHhccccchhh----HhHHHHHHHHHhhheecc
Q 024838 166 LFIQLWCIEQRGPVFVTIFNP-LTTVIVAVAAYFLVGEKLHTGC----ILGGLIVIIGLYSLLWGK 226 (262)
Q Consensus 166 ~~~~~~~~~~~~~~~~s~~~~-~~pv~a~~~~~~~~~e~~~~~~----~~G~~li~~g~~l~~~~~ 226 (262)
+.++..++++.+.+.+-.+.+ +++++..+++.+++||+.+..+ ++|.++++.|+++....+
T Consensus 73 ~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~ 138 (290)
T TIGR00776 73 QINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSK 138 (290)
T ss_pred hhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEecc
Confidence 899999999999999988888 8889999999999999999999 999999999999986543
No 54
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=98.54 E-value=2.6e-06 Score=72.22 Aligned_cols=141 Identities=18% Similarity=0.259 Sum_probs=105.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHhccCcccccccchhhHHHHHHHhhhhhh
Q 024838 84 LKGSILTVASCILWSSFYIMQAFTLKKYPAKLSISAWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAVSSC 163 (262)
Q Consensus 84 ~~G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~ 163 (262)
..+....+..++.|+......|.......+.......+...+.+...+... ..+ ..... ....+......+.+...
T Consensus 6 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~--~~~~~~~~~~~~~~~~~ 81 (292)
T COG0697 6 LLGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLL-LEP-RGLRP--ALRPWLLLLLLALLGLA 81 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHH-hhc-ccccc--cccchHHHHHHHHHHHH
Confidence 467788888889999999998887776325555555577777666332322 111 01111 11124455566667788
Q ss_pred HHHHHHHHHHhhcCceeeeehhchHHHHHHHHHH-HHhccccchhhHhHHHHHHHHHhhheecccC
Q 024838 164 LNLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAY-FLVGEKLHTGCILGGLIVIIGLYSLLWGKEG 228 (262)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~-~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~ 228 (262)
..+.+++.++++.++..++.+.+..|+++.++++ ++++|+++..++.|..+.+.|+++..+....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~ 147 (292)
T COG0697 82 LPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGG 147 (292)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCc
Confidence 9999999999999999999999999999999997 7679999999999999999999998865543
No 55
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=98.51 E-value=8e-07 Score=76.10 Aligned_cols=210 Identities=13% Similarity=0.169 Sum_probs=112.8
Q ss_pred cccchhHHHHhhhchHHHHHHHHHHHhhhcccccCCCcchhhhhHHHHhHHHHHHHHhcCCCCCCCCCCCcccCCCcccc
Q 024838 2 KYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVHE 81 (262)
Q Consensus 2 ~~~s~~~a~~i~~~~pi~~~ll~~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (262)
.+.+++..+-+..+.-++.++++..++|||++.+. +.|..+.+.|..++... +|..++.. ........-.+.
T Consensus 72 ~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~------~~G~~l~i~G~~liv~~-~~~~~~~~-t~~~l~~~~~~~ 143 (300)
T PF05653_consen 72 GFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRD------IVGCALIILGSVLIVIF-APKEEPIH-TLDELIALLSQP 143 (300)
T ss_pred HhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhH------HhhHHHHHhhheeeEEe-CCCCCCcC-CHHHHHHHhcCc
Confidence 35677778888899999999999999999999999 99999999998877653 44331111 000000000011
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHH---HH----HHhccCcccccccchhhHHHH
Q 024838 82 NWLKGSILTVASCILWSSFYIMQAFTLKKYPAKLSISAWMNCIGAAQSAV---YT----IIVQPKAAAWSTTSGIDLWCI 154 (262)
Q Consensus 82 ~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---~~----~~~~~~~~~~~~~~~~~~~~~ 154 (262)
.+ ..+...... +...+.....+|..++ +..........+++...+. +. ...+++ ..+. .+..|..+
T Consensus 144 ~f-l~y~~~~~~-~~~~L~~~~~~r~g~~--~i~vyi~i~sl~Gs~tvl~~K~i~~~i~~~~~g~-~~f~--~~~~y~l~ 216 (300)
T PF05653_consen 144 GF-LVYFILVLV-LILILIFFIKPRYGRR--NILVYISICSLIGSFTVLSAKAISILIKLTFSGD-NQFT--YPLTYLLL 216 (300)
T ss_pred ce-ehhHHHHHH-HHHHHHHhhcchhccc--ceEEEEEEeccccchhhhHHHHHHHHHHHHhcCc-hhhh--hhHHHHHH
Confidence 11 111111111 1222222222221111 1110000001111111111 11 101111 1121 23445544
Q ss_pred HHHhhhhhhHHHHHHHHHHhhcCceeeeehhchH-HHHHHHHHHHHhcccc--chhh----HhHHHHHHHHHhhheeccc
Q 024838 155 IYSGAVSSCLNLFIQLWCIEQRGPVFVTIFNPLT-TVIVAVAAYFLVGEKL--HTGC----ILGGLIVIIGLYSLLWGKE 227 (262)
Q Consensus 155 ~~~gi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~-pv~a~~~~~~~~~e~~--~~~~----~~G~~li~~g~~l~~~~~~ 227 (262)
+.+. .+...-..+.|+++++.+++.+..+.+.. ...+++-|.++++|.- ++.+ ..|+.+++.|+++.+..|.
T Consensus 217 ~~~v-~~~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii~GV~lL~~~~~ 295 (300)
T PF05653_consen 217 LVLV-VTAVLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIIIIGVFLLSSSKD 295 (300)
T ss_pred HHHH-HHHHHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhheeeccCc
Confidence 4433 34456666778999999999888776654 5667777888899855 3433 4688899999999885543
No 56
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=98.43 E-value=3.9e-06 Score=71.90 Aligned_cols=127 Identities=9% Similarity=-0.014 Sum_probs=99.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHhccCcccccccchhhHHHHHHHhhhhhh
Q 024838 84 LKGSILTVASCILWSSFYIMQAFTLKKYPAKLSISAWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAVSSC 163 (262)
Q Consensus 84 ~~G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~ 163 (262)
..|+.++++++++|+......|...+.. ++....++++.++.++++++.... . ..+ +.+++...+..|+. .+
T Consensus 11 ~~~~~~~~la~~~~~~~~~~~K~~~~~~-~~~~~~~~R~~~a~l~l~~~~~~~-~--~~~---~~~~~~~~~~~g~~-~~ 82 (293)
T PRK10532 11 WLPILLLLIAMASIQSGASLAKSLFPLV-GAPGVTALRLALGTLILIAIFKPW-R--LRF---AKEQRLPLLFYGVS-LG 82 (293)
T ss_pred chHHHHHHHHHHHHHhhHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHHhHH-h--ccC---CHHHHHHHHHHHHH-HH
Confidence 5789999999999999999999988888 999999999999998887664321 1 111 23456666666664 56
Q ss_pred HHHHHHHHHHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhhee
Q 024838 164 LNLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLW 224 (262)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~ 224 (262)
..+.++++++++++++.++.+.+..|+++.+++. |++. +..+.++.++|+.+...
T Consensus 83 ~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~~----~~~~--~~~~~~i~~~Gv~li~~ 137 (293)
T PRK10532 83 GMNYLFYLSIQTVPLGIAVALEFTGPLAVALFSS----RRPV--DFVWVVLAVLGLWFLLP 137 (293)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhc----CChH--HHHHHHHHHHHHheeee
Confidence 7778899999999999999999999999988773 5554 44566777888887653
No 57
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=98.32 E-value=2.4e-05 Score=67.80 Aligned_cols=144 Identities=10% Similarity=0.056 Sum_probs=101.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhh-cCChhHHHHHHHHHHHHHHHHHHHHhccCcccccccchhhHHHHHHHhhhh
Q 024838 83 WLKGSILTVASCILWSSFYIMQAFTLKK-YPAKLSISAWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAVS 161 (262)
Q Consensus 83 ~~~G~~l~l~a~~~~a~~~v~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~ 161 (262)
...+.++.-.-+++-+...+....+..+ ..-|....++.+..-.++-.+..... +....+.......|+..+.+++ .
T Consensus 11 ~~~~~~lgQ~lsl~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~~~~~~r-~~~~~~~~~~~~~~w~y~lla~-~ 88 (334)
T PF06027_consen 11 FWIVLLLGQVLSLCITGTGTFSSLLANKGVNIPTFQSFFNYVLLALVYTPILLYR-RGFKKWLKVLKRPWWKYFLLAL-L 88 (334)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhcCccCcHHHHHHHHHHHHHHHhhhhhhc-cccccchhhcchhHHHHHHHHH-H
Confidence 3445555555555555556665555444 22466666666666555555544432 2222232223445666666676 4
Q ss_pred hhHHHHHHHHHHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhheecccC
Q 024838 162 SCLNLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGKEG 228 (262)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~ 228 (262)
=..+-.+.+.|.++++.+.+.++.....+++++++++++++++++.+++|+.++++|+.++......
T Consensus 89 Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~ 155 (334)
T PF06027_consen 89 DVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVL 155 (334)
T ss_pred HHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeeccc
Confidence 4677789999999999999999999999999999999999999999999999999999998866543
No 58
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=98.22 E-value=1.8e-05 Score=58.07 Aligned_cols=69 Identities=13% Similarity=0.150 Sum_probs=58.2
Q ss_pred hhhhhhHHHHHHHHHHhhcCceeeeeh-hchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhheecc
Q 024838 158 GAVSSCLNLFIQLWCIEQRGPVFVTIF-NPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGK 226 (262)
Q Consensus 158 gi~~~~~~~~~~~~~~~~~~~~~~s~~-~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~ 226 (262)
.+++.++++.++..++|+++.+.+=.+ ..+-.+.+.+.++++++|++++.+++|.++++.|+++.....
T Consensus 36 ~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~ 105 (120)
T PRK10452 36 MLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT 105 (120)
T ss_pred HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence 344567899999999999997776444 457788899999999999999999999999999999886544
No 59
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=98.21 E-value=6.2e-07 Score=73.41 Aligned_cols=137 Identities=12% Similarity=0.132 Sum_probs=98.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHhccCcccccccchhhHHHHHHHhhhh
Q 024838 82 NWLKGSILTVASCILWSSFYIMQAFTLKKYPAKLSISAWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAVS 161 (262)
Q Consensus 82 ~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~ 161 (262)
...+|..+...+ ..+....++.++...+ +|......++..-.++..|..+..... ....+..-.+++.=|+.
T Consensus 35 ~p~~gl~l~~vs-~ff~~~~vv~t~~~e~--~p~e~a~~r~l~~mlit~pcliy~~~~----v~gp~g~R~~LiLRg~m- 106 (346)
T KOG4510|consen 35 KPNLGLLLLTVS-YFFNSCMVVSTKVLEN--DPMELASFRLLVRMLITYPCLIYYMQP----VIGPEGKRKWLILRGFM- 106 (346)
T ss_pred CCccCceehhhH-HHHhhHHHhhhhhhcc--ChhHhhhhhhhhehhhhheEEEEEeee----eecCCCcEEEEEeehhh-
Confidence 344788888888 7888888888887766 666666666555555555544432211 11111112222223332
Q ss_pred hhHHHHHHHHHHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhheecc
Q 024838 162 SCLNLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGK 226 (262)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~ 226 (262)
+..+.++.++++++.+-+.+.++...+|+++++++|++++|+.+...-+|..+.+.|+++..|-.
T Consensus 107 G~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPp 171 (346)
T KOG4510|consen 107 GFTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPP 171 (346)
T ss_pred hhhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCC
Confidence 24566777899999999999999999999999999999999999999999999999999987543
No 60
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.19 E-value=1.8e-06 Score=63.15 Aligned_cols=50 Identities=28% Similarity=0.479 Sum_probs=46.1
Q ss_pred cccchhHHHHhhhchHHHHHHHHHHHhhhcccccCCCcchhhhhHHHHhHHHHHHHH
Q 024838 2 KYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAF 58 (262)
Q Consensus 2 ~~~s~~~a~~i~~~~pi~~~ll~~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~~l~~ 58 (262)
+|.+ +.++.+.++.|+++++++++++|||+++++ +.+++++++|++++..
T Consensus 57 ~~~~-~~v~~i~~~~pi~~~ll~~~~~~er~~~~~------~~a~~l~~~Gv~li~~ 106 (113)
T PF13536_consen 57 SYAP-ALVAAIFSLSPIFTALLSWLFFKERLSPRR------WLAILLILIGVILIAW 106 (113)
T ss_pred HhCc-HHHHHHHHHHHHHHHHHHHHHhcCCCCHHH------HHHHHHHHHHHHHHhh
Confidence 5677 588899999999999999999999999998 9999999999999976
No 61
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=98.18 E-value=4.2e-05 Score=65.87 Aligned_cols=130 Identities=12% Similarity=0.062 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHhhhhcC-C--hhHHHHHHHHHHHHHHHHHHHHhccCcccccccchhhHHHHHHHhhhhhhHHHHHHHHH
Q 024838 96 LWSSFYIMQAFTLKKYP-A--KLSISAWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAVSSCLNLFIQLWC 172 (262)
Q Consensus 96 ~~a~~~v~~~~~~~~~~-~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~ 172 (262)
++..+.+.+++..++.. . +..+++.++....+...+.......+.. ....+...+..++ ...++..+.+.+
T Consensus 11 ~~~~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~-~~~~~~~~~~~a 84 (303)
T PF08449_consen 11 GCCSYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKFPKS-----RKIPLKKYAILSF-LFFLASVLSNAA 84 (303)
T ss_pred HHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhccccCC-----CcChHHHHHHHHH-HHHHHHHHHHHH
Confidence 34445577777776652 3 6788888888888877776664431111 1112233333343 446677899999
Q ss_pred HhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhheecccCccc
Q 024838 173 IEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGKEGDQH 231 (262)
Q Consensus 173 ~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~~~~ 231 (262)
+++++.....+.-...|++++++++++++++.+..++.+.+++.+|+.+....+.++.+
T Consensus 85 l~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~ 143 (303)
T PF08449_consen 85 LKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSS 143 (303)
T ss_pred HHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeeccccccc
Confidence 99999999999999999999999999999999999999999999999998876654443
No 62
>PRK13499 rhamnose-proton symporter; Provisional
Probab=98.14 E-value=0.00054 Score=59.51 Aligned_cols=213 Identities=15% Similarity=0.122 Sum_probs=118.9
Q ss_pred ccchhHHHHh-hhchHHHHHHHHHHHhhhcc---cccCCCcchhhhhHHHHhHHHHHHHHhcCCCCCCCCCCCcccCCCc
Q 024838 3 YVHPTFMTAV-VNTIPCMTFIIAVVFRLEIV---DVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNS 78 (262)
Q Consensus 3 ~~s~~~a~~i-~~~~pi~~~ll~~~~~~E~~---~~~~~~~~~~~~g~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~ 78 (262)
|...+.+.-+ ..++-++..++..++++|-. +..+ ...-+.|+++.++|+++.... +... +.... +...
T Consensus 96 ~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~--g~~~~~gv~liliGi~l~s~A-g~~k----~~~~~-~~~~ 167 (345)
T PRK13499 96 YLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNG--GRMTLLGVLVALIGVAIVGRA-GQLK----ERKMG-IKKA 167 (345)
T ss_pred HhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccch--HHHHHHHHHHHHHHHHHHHHh-hhhc----ccccc-cccc
Confidence 3344444333 34777888888999988765 2222 233468888999998888752 2111 00000 0001
Q ss_pred ccchhhHHHHHHHHHHHHHHHHH-------HHHHHhhhhcCChhHHHHHHHH---HHHHHHHHHHHHh---c-cCccccc
Q 024838 79 VHENWLKGSILTVASCILWSSFY-------IMQAFTLKKYPAKLSISAWMNC---IGAAQSAVYTIIV---Q-PKAAAWS 144 (262)
Q Consensus 79 ~~~~~~~G~~l~l~a~~~~a~~~-------v~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~---~-~~~~~~~ 144 (262)
++.+...|+++++++.+.++.|. ...+...+...++.....-+.. ++.++.-.+.... . ++...+.
T Consensus 168 ~~~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k~~~~~~~~ 247 (345)
T PRK13499 168 EEFNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSYVVIMGGGAITNLGFCFIRLAKNKDLSLKA 247 (345)
T ss_pred cccchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccch
Confidence 34567799999999999999999 4433321111133333332222 3333322221111 1 1111111
Q ss_pred c--cc----hhhHHHHHHHhhhhhhHHHHHHHHHHhhcCceeeee----hhchHHHHHHHHHHHHhccccc------hhh
Q 024838 145 T--TS----GIDLWCIIYSGAVSSCLNLFIQLWCIEQRGPVFVTI----FNPLTTVIVAVAAYFLVGEKLH------TGC 208 (262)
Q Consensus 145 ~--~~----~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~s~----~~~~~pv~a~~~~~~~~~e~~~------~~~ 208 (262)
. .+ ..+...-+..|+ .=.+++.++..+-++.+....-. .+.+..+++.+++.+ ++|+=+ ...
T Consensus 248 ~~~~~~~~~~~n~l~~~l~G~-~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi~-lkE~K~a~~k~~~~l 325 (345)
T PRK13499 248 DFSLAKPLLITNVLLSALAGV-MWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGLV-LKEWKGASRRPVRVL 325 (345)
T ss_pred hccccchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhhh-hhhccCCCccchhHH
Confidence 1 11 112222233333 34566777778888886554433 337777999999995 999866 555
Q ss_pred HhHHHHHHHHHhhheec
Q 024838 209 ILGGLIVIIGLYSLLWG 225 (262)
Q Consensus 209 ~~G~~li~~g~~l~~~~ 225 (262)
++|+++++.|..+...+
T Consensus 326 ~~G~vliI~g~~lig~~ 342 (345)
T PRK13499 326 SLGCVVIILAANIVGLG 342 (345)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 78999999998887654
No 63
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.99 E-value=2.2e-05 Score=66.25 Aligned_cols=208 Identities=13% Similarity=0.174 Sum_probs=117.5
Q ss_pred ccchhHHHHhhhchHHHHHHHHHHHhhhcccccCCCcchhhhhHHHHhHHHHHHHHhcCCCCCCCCCCCcccCCCcccch
Q 024838 3 YVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVHEN 82 (262)
Q Consensus 3 ~~s~~~a~~i~~~~pi~~~ll~~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (262)
|.+++..+-+.+++-++.++++..++|||++... .+|+.+.++|-.++.. .+|...+.... ......-.+..
T Consensus 87 FAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g------~lGc~l~v~Gst~iV~-haP~e~~i~t~-~el~~~~~~~~ 158 (335)
T KOG2922|consen 87 FAPASLVTPLGALSVIISAILASFFLKEKLNLLG------ILGCVLCVVGSTTIVI-HAPKEQEIESV-EEVWELATEPG 158 (335)
T ss_pred hchHhhhccchhHHHHHHHHHHHHHHHHHHHHhh------hhheeEEecccEEEEE-ecCcccccccH-HHHHHHhcCcc
Confidence 5677778888899999999999999999999999 9999999999888876 35543110000 00000000111
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHH--------H--HHhccCcccccccchhhHH
Q 024838 83 WLKGSILTVASCILWSSFYIMQAFTLKKYPAKLSISAWMNCIGAAQSAVY--------T--IIVQPKAAAWSTTSGIDLW 152 (262)
Q Consensus 83 ~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--------~--~~~~~~~~~~~~~~~~~~~ 152 (262)
+.. +..+-.+...+-....++ +. .......+..+.+.+..+-+ + +...++ .....+..|.
T Consensus 159 Fli---y~~~iil~~~il~~~~~p---~~-g~tnilvyi~i~s~iGS~tV~svKalg~aiklt~~g~---~ql~~~~ty~ 228 (335)
T KOG2922|consen 159 FLV---YVIIIILIVLILIFFYAP---RY-GQTNILVYIGICSLIGSLTVMSVKALGIAIKLTFSGN---NQLFYPLTWI 228 (335)
T ss_pred HHH---HHHHHHHHHHHHheeecc---cc-cccceeehhhHhhhhcceeeeeHHHHHHHHHHHhcCC---cccccHHHHH
Confidence 111 111111111111111111 11 11222333333333321111 1 111121 1222345566
Q ss_pred HHHHHhhhhhhHHHHHHHHHHhhcCceeeeehhch-HHHHHHHHHHHHhccccch------hhHhHHHHHHHHHhhheec
Q 024838 153 CIIYSGAVSSCLNLFIQLWCIEQRGPVFVTIFNPL-TTVIVAVAAYFLVGEKLHT------GCILGGLIVIIGLYSLLWG 225 (262)
Q Consensus 153 ~~~~~gi~~~~~~~~~~~~~~~~~~~~~~s~~~~~-~pv~a~~~~~~~~~e~~~~------~~~~G~~li~~g~~l~~~~ 225 (262)
.++.+.. +...-..-.|+|++.-+++.++.+.++ -..++++-+.++|+|.-.. ....|+..++.|+++....
T Consensus 229 ~~l~~~~-~~~~Q~~yLNkAL~~fntslV~PiyyV~fTtl~I~as~I~Fkew~~~~~~~i~~~~~Gf~ti~~G~flL~~~ 307 (335)
T KOG2922|consen 229 FLLVVAT-CVSTQMNYLNKALDLFNTSIVSPIYYVMFTTLVILASAILFKEWSGQDALDIAGELCGFVTIFLGIFLLHRT 307 (335)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHhhheeeEeeee
Confidence 6665554 334444456799999998888877665 4577888999999997643 2357999999999998755
Q ss_pred ccCc
Q 024838 226 KEGD 229 (262)
Q Consensus 226 ~~~~ 229 (262)
|.++
T Consensus 308 kd~~ 311 (335)
T KOG2922|consen 308 KDME 311 (335)
T ss_pred cccc
Confidence 5443
No 64
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=97.95 E-value=0.00015 Score=54.92 Aligned_cols=132 Identities=15% Similarity=0.148 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHhccCcccccccchhhHHHHHHHhhhhhhHH
Q 024838 86 GSILTVASCILWSSFYIMQAFTLKKYPAKLSISAWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAVSSCLN 165 (262)
Q Consensus 86 G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~ 165 (262)
..++++.+.++-+....++.++.++..++....++.+..+.+.+..+.++..+. ..+......|+. ++|-+.+..-
T Consensus 2 ~~lla~~aG~~i~~q~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~--~~~~~~~~p~w~--~lGG~lG~~~ 77 (138)
T PF04657_consen 2 YILLALLAGALIALQAAFNGQLGKALGSPLVASFISFGVGFILLLIILLITGRP--SLASLSSVPWWA--YLGGLLGVFF 77 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhccc--ccchhccCChHH--hccHHHHHHH
Confidence 357888999999999999999888885699999999999999998888876553 222222223333 3344455667
Q ss_pred HHHHHHHHhhcCceeeeehhc-hHHHHHHHHHHH----HhccccchhhHhHHHHHHHHHhh
Q 024838 166 LFIQLWCIEQRGPVFVTIFNP-LTTVIVAVAAYF----LVGEKLHTGCILGGLIVIIGLYS 221 (262)
Q Consensus 166 ~~~~~~~~~~~~~~~~s~~~~-~~pv~a~~~~~~----~~~e~~~~~~~~G~~li~~g~~l 221 (262)
..+....++++|++....+.. -+.+.+.+++.+ .-++++++.+++|..+++.|+++
T Consensus 78 V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 78 VLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 778889999999887766554 355666677765 45578899999999999999874
No 65
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=97.95 E-value=8.1e-06 Score=60.12 Aligned_cols=51 Identities=24% Similarity=0.466 Sum_probs=47.0
Q ss_pred CcccchhHHHHhhhchHHHHHHHHHHHhhhcccccCCCcchhhhhHHHHhHHHHHHH
Q 024838 1 MKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIA 57 (262)
Q Consensus 1 l~~~s~~~a~~i~~~~pi~~~ll~~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~~l~ 57 (262)
+++++++.++.+.+++|++++++++++++|++++++ +.|+++++.|++++.
T Consensus 75 ~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~------~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 75 LKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQ------IIGIILIIIGVVLIS 125 (126)
T ss_pred HHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHH------HHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999988888 999999999988764
No 66
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.95 E-value=7.6e-05 Score=54.05 Aligned_cols=67 Identities=10% Similarity=0.259 Sum_probs=56.1
Q ss_pred hhhhhHHHHHHHHHHhhcCceeeeeh-hchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhheec
Q 024838 159 AVSSCLNLFIQLWCIEQRGPVFVTIF-NPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWG 225 (262)
Q Consensus 159 i~~~~~~~~~~~~~~~~~~~~~~s~~-~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~ 225 (262)
+++.++++.++..++++++.+.+=.. ..+..+.+.++++++|+|++++.+++|.++++.|+++....
T Consensus 37 ~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~ 104 (110)
T PRK09541 37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLL 104 (110)
T ss_pred HHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 34567889999999999987665333 45677888999999999999999999999999999998643
No 67
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=97.83 E-value=0.00011 Score=63.00 Aligned_cols=117 Identities=21% Similarity=0.270 Sum_probs=86.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCC-hhHHHHHHHHHHHHHHHHHHHHhccCcccccccchhhHHHHHHHhhh
Q 024838 82 NWLKGSILTVASCILWSSFYIMQAFTLKKYPA-KLSISAWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAV 160 (262)
Q Consensus 82 ~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~ 160 (262)
++.+|..+++.++++.+....++|+...+.+. ..... .. .... ++ ++..|..+ +
T Consensus 4 ~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~~~--~~--------~~~~--------l~--~~~W~~G~-----~ 58 (300)
T PF05653_consen 4 DFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLRAG--SG--------GRSY--------LR--RPLWWIGL-----L 58 (300)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc--ch--------hhHH--------Hh--hHHHHHHH-----H
Confidence 35689999999999999999999997766521 11000 00 0000 00 11112222 2
Q ss_pred hhhHHHHHHHHHHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhhe
Q 024838 161 SSCLNLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLL 223 (262)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~ 223 (262)
...++..+...++...+++.++.+..+..++..+++.++++|+++...+.|+++++.|..+..
T Consensus 59 ~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv 121 (300)
T PF05653_consen 59 LMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIV 121 (300)
T ss_pred HHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeE
Confidence 334566677789999999999999999999999999999999999999999999999988755
No 68
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=97.82 E-value=0.00045 Score=57.81 Aligned_cols=114 Identities=18% Similarity=0.132 Sum_probs=83.0
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHhccCcccccccchhhHHHHHHHhhhhhhHHHHHHHHHHhhcCceeeeehh-chHHHH
Q 024838 113 AKLSISAWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAVSSCLNLFIQLWCIEQRGPVFVTIFN-PLTTVI 191 (262)
Q Consensus 113 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~s~~~-~~~pv~ 191 (262)
+|.+...-+.+-+.++.+...++..+ .+. .+...++.-+..|+ .=.+++..++++.+++|.+++..+. .++.+.
T Consensus 11 ~~~~Q~lG~t~Gali~alv~~~~~~p---~~~-~~~~~~~~~~lsG~-~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg 85 (269)
T PF06800_consen 11 KPANQILGTTIGALIFALVVFLFRQP---AFS-MSGTSFIVAFLSGA-FWAIGQIGQFKSFKKIGVSKTMPISTGLQLVG 85 (269)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhCC---Ccc-hHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcceeeeccchhHHHHH
Confidence 45555555555555555555554322 221 12355666666676 4578999999999999999999887 677788
Q ss_pred HHHHHHHHhccccchhhHh----HHHHHHHHHhhheecccCccc
Q 024838 192 VAVAAYFLVGEKLHTGCIL----GGLIVIIGLYSLLWGKEGDQH 231 (262)
Q Consensus 192 a~~~~~~~~~e~~~~~~~~----G~~li~~g~~l~~~~~~~~~~ 231 (262)
+.++++++|||+-+..+++ +.++++.|+++-.++++++++
T Consensus 86 ~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~~~~~~ 129 (269)
T PF06800_consen 86 TSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQDKKSDK 129 (269)
T ss_pred HHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhccccccccc
Confidence 9999999999999877763 778899999998877765554
No 69
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.78 E-value=0.00033 Score=50.58 Aligned_cols=64 Identities=9% Similarity=0.190 Sum_probs=53.9
Q ss_pred hhhhHHHHHHHHHHhhcCceee-eehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhhe
Q 024838 160 VSSCLNLFIQLWCIEQRGPVFV-TIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLL 223 (262)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~-s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~ 223 (262)
++..++|.+...++|+++.+.+ ++...+-.+.+.+.++++++|++++.+++|.++++.|+.+..
T Consensus 43 ~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk 107 (109)
T PRK10650 43 AAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK 107 (109)
T ss_pred HHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 3557899999999999986653 445556678889999999999999999999999999998763
No 70
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=97.77 E-value=2.9e-05 Score=56.51 Aligned_cols=51 Identities=16% Similarity=0.143 Sum_probs=46.7
Q ss_pred CcccchhHHHHhhhchHHHHHHHHHHHhhhcccccCCCcchhhhhHHHHhHHHHHHH
Q 024838 1 MKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIA 57 (262)
Q Consensus 1 l~~~s~~~a~~i~~~~pi~~~ll~~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~~l~ 57 (262)
+++.+.+.+..+.++.++++++++++++|||+++++ ++|+.++++|++++.
T Consensus 58 l~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~------~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 58 LQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRH------WCGVAFIIGGIVILG 108 (111)
T ss_pred HhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH------HHHHHHHHHHHHHHh
Confidence 356788899998889999999999999999999999 999999999998875
No 71
>PRK13499 rhamnose-proton symporter; Provisional
Probab=97.67 E-value=0.00044 Score=60.05 Aligned_cols=141 Identities=17% Similarity=0.101 Sum_probs=93.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHH-HHHHHHhccCc-ccccccchhhHHHHHHHhhh
Q 024838 83 WLKGSILTVASCILWSSFYIMQAFTLKKYPAKLSISAWMNCIGAAQS-AVYTIIVQPKA-AAWSTTSGIDLWCIIYSGAV 160 (262)
Q Consensus 83 ~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gi~ 160 (262)
...|+++.++++++|+.+++=.|+ .|+. +....=....+++-+++ .....+..++. ..+...+...+......|++
T Consensus 5 ~~~G~~~~~i~~~~~GS~~~p~K~-~k~w-~wE~~W~v~gi~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l~G~~ 82 (345)
T PRK13499 5 IILGIIWHLIGGASSGSFYAPFKK-VKKW-SWETMWSVGGIFSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVFLFGAL 82 (345)
T ss_pred hHHHHHHHHHHHHHhhcccccccc-cCCC-chhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHHHHHH
Confidence 468999999999999999999988 6666 53333111111111111 11122222221 12222345556666666664
Q ss_pred hhhHHHHHHHHHHhhcCceeeeeh-hchHHHHHHHHHHHHhcccc---ch----hhHhHHHHHHHHHhhheecc
Q 024838 161 SSCLNLFIQLWCIEQRGPVFVTIF-NPLTTVIVAVAAYFLVGEKL---HT----GCILGGLIVIIGLYSLLWGK 226 (262)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~s~~-~~~~pv~a~~~~~~~~~e~~---~~----~~~~G~~li~~g~~l~~~~~ 226 (262)
=.++...+..++|++|.+....+ .-++.+++.+++.+++||.. +. ..++|.++++.|+.+..+.-
T Consensus 83 -W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag 155 (345)
T PRK13499 83 -WGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAG 155 (345)
T ss_pred -HHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhh
Confidence 46899999999999998887665 45778899999999999865 32 34689999999999987633
No 72
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.62 E-value=0.0011 Score=50.31 Aligned_cols=140 Identities=12% Similarity=0.064 Sum_probs=93.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHhccCcccccccchhhHHHHHHHhhhhhh
Q 024838 84 LKGSILTVASCILWSSFYIMQAFTLKKYPAKLSISAWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAVSSC 163 (262)
Q Consensus 84 ~~G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~ 163 (262)
....+.++++.++-.....++.++.+...+|.......+..+.+.+..+.++. ++...+....+..|+..+. |+ .++
T Consensus 4 ~l~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~-~~~~~~a~~~~~pwW~~~G-G~-lGa 80 (150)
T COG3238 4 YLYLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIK-QGHPGLAAVASAPWWAWIG-GL-LGA 80 (150)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHh-cCCCchhhccCCchHHHHc-cc-hhh
Confidence 35678888999999999999999888886799999999999999998888873 3333333222222332222 32 322
Q ss_pred HHHHHHHHHHhhcCcee-eeehhchHHHHHHHHHHHHhc----cccchhhHhHHHHHHHHHhhheecc
Q 024838 164 LNLFIQLWCIEQRGPVF-VTIFNPLTTVIVAVAAYFLVG----EKLHTGCILGGLIVIIGLYSLLWGK 226 (262)
Q Consensus 164 ~~~~~~~~~~~~~~~~~-~s~~~~~~pv~a~~~~~~~~~----e~~~~~~~~G~~li~~g~~l~~~~~ 226 (262)
+-...-....+++|++. ......-+.+.+++++-+=+. .+++...++|++++++|+++..+++
T Consensus 81 ~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~~~ 148 (150)
T COG3238 81 IFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARRFG 148 (150)
T ss_pred hhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhcccc
Confidence 22333335566666543 344445566677777766444 6789999999999999966666543
No 73
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.60 E-value=0.0007 Score=48.56 Aligned_cols=66 Identities=14% Similarity=0.285 Sum_probs=55.6
Q ss_pred hhhhhHHHHHHHHHHhhcCceee-eehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhhee
Q 024838 159 AVSSCLNLFIQLWCIEQRGPVFV-TIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLW 224 (262)
Q Consensus 159 i~~~~~~~~~~~~~~~~~~~~~~-s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~ 224 (262)
+++..+++.+...++|+++.+.+ ++..-+-.+.+.+.++++++|++++.+++|..+++.|++....
T Consensus 36 i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l 102 (105)
T PRK11431 36 VTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKL 102 (105)
T ss_pred HHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Confidence 34557899999999999986653 5555577788999999999999999999999999999988753
No 74
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.57 E-value=0.00056 Score=48.71 Aligned_cols=65 Identities=20% Similarity=0.283 Sum_probs=55.1
Q ss_pred hhhHHHHHHHHHHhhcCcee-eeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhheec
Q 024838 161 SSCLNLFIQLWCIEQRGPVF-VTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWG 225 (262)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~-~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~ 225 (262)
+..++|.+...++|+++.+. .++..-+-.+.+.+.++++|+|++++.+++|..++++|+......
T Consensus 39 ~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~ 104 (106)
T COG2076 39 GYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLG 104 (106)
T ss_pred HHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhc
Confidence 45688899999999988654 356666777889999999999999999999999999999887643
No 75
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=97.53 E-value=0.00032 Score=58.36 Aligned_cols=79 Identities=10% Similarity=0.143 Sum_probs=66.0
Q ss_pred hHHHHHHHhhhhhhHHHHHHHHHHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhheecccCc
Q 024838 150 DLWCIIYSGAVSSCLNLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGKEGD 229 (262)
Q Consensus 150 ~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~~ 229 (262)
+...++.=++ ...+.-.+.+.++++++|+...++..+..+++.++++++++++++..||.+..+.++|+.+........
T Consensus 16 ~~~~~~vPA~-lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~ 94 (244)
T PF04142_consen 16 DTLKLAVPAL-LYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQS 94 (244)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCccc
Confidence 3333333333 345666788899999999999999999999999999999999999999999999999999988766544
No 76
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=97.51 E-value=0.00041 Score=48.74 Aligned_cols=56 Identities=20% Similarity=0.273 Sum_probs=34.6
Q ss_pred hhhhHHHHHHHHHHhhcCceee-eehhchHHHHHHHHHHHHhccccchhhHhHHHHH
Q 024838 160 VSSCLNLFIQLWCIEQRGPVFV-TIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIV 215 (262)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~-s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li 215 (262)
.+..+++.++.+++|+++.+.+ .+...+..+.+.+.++++++|++++.++.|..++
T Consensus 37 ~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 37 VGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 3567899999999999998887 4455688899999999999999999999999875
No 77
>COG2510 Predicted membrane protein [Function unknown]
Probab=97.40 E-value=2.7e-05 Score=56.83 Aligned_cols=50 Identities=12% Similarity=0.300 Sum_probs=43.5
Q ss_pred cccchhHHHHhhhchHHHHHHHHHHHhhhcccccCCCcchhhhhHHHHhHHHHHHH
Q 024838 2 KYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIA 57 (262)
Q Consensus 2 ~~~s~~~a~~i~~~~pi~~~ll~~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~~l~ 57 (262)
|...++...-+..++|+++++++++++|||++.++ ++|+++..+|++++.
T Consensus 89 k~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~------~iG~~LI~~Gailvs 138 (140)
T COG2510 89 KKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPT------WIGIVLIVIGAILVS 138 (140)
T ss_pred hcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHH------HHHHHHHHhCeeeEe
Confidence 34556667778889999999999999999999999 999999999987763
No 78
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=97.16 E-value=0.0013 Score=54.67 Aligned_cols=132 Identities=11% Similarity=0.062 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHhccCcccccccchhhHHHHHHHhhhhhhHH
Q 024838 86 GSILTVASCILWSSFYIMQAFTLKKYPAKLSISAWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAVSSCLN 165 (262)
Q Consensus 86 G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~ 165 (262)
|++..+.|+++++...+=.|+.- .. |++....+++....+....+.++.+. +.+. .+.++.-.+. +.+
T Consensus 1 G~~a~~va~~~fGs~~vPvK~~~-~g-Dg~~fQw~~~~~i~~~g~~v~~~~~~--p~f~------p~amlgG~lW--~~g 68 (254)
T PF07857_consen 1 GYIACIVAVLFFGSNFVPVKKFD-TG-DGFFFQWVMCSGIFLVGLVVNLILGF--PPFY------PWAMLGGALW--ATG 68 (254)
T ss_pred CchhHHHHHHHhcccceeeEecc-CC-CcHHHHHHHHHHHHHHHHHHHHhcCC--Ccce------eHHHhhhhhh--hcC
Confidence 56778899999999988877643 33 78888877777777777766665432 1111 1111110111 111
Q ss_pred HHHHHHHHhhcCceeeeeh-hchHHHHHHHHHHH-Hhcccc-----chhhHhHHHHHHHHHhhheecccCc
Q 024838 166 LFIQLWCIEQRGPVFVTIF-NPLTTVIVAVAAYF-LVGEKL-----HTGCILGGLIVIIGLYSLLWGKEGD 229 (262)
Q Consensus 166 ~~~~~~~~~~~~~~~~s~~-~~~~pv~a~~~~~~-~~~e~~-----~~~~~~G~~li~~g~~l~~~~~~~~ 229 (262)
-.+-.-.+|.+|-...-.+ ...+-+.+...+.+ +||++. .+..++|++++++|..++..-|.+.
T Consensus 69 N~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~~ 139 (254)
T PF07857_consen 69 NILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSEE 139 (254)
T ss_pred ceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecCCC
Confidence 1122233444443322222 22344455555544 454433 4566899999999998887666554
No 79
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=97.11 E-value=0.032 Score=48.12 Aligned_cols=142 Identities=6% Similarity=-0.003 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcC---ChhHHHHHHHHHHHHHHHHHHHHhccC--------cccccccchhhHHH
Q 024838 85 KGSILTVASCILWSSFYIMQAFTLKKYP---AKLSISAWMNCIGAAQSAVYTIIVQPK--------AAAWSTTSGIDLWC 153 (262)
Q Consensus 85 ~G~~l~l~a~~~~a~~~v~~~~~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~--------~~~~~~~~~~~~~~ 153 (262)
.-++.++...+.++......|+..+... .+.+..+..-++-.++++...+..++. ...+....+.+...
T Consensus 15 ~k~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk 94 (345)
T KOG2234|consen 15 MKYLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLK 94 (345)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHH
Confidence 4566667777778888888777554431 467777777788888887777755321 00111111111111
Q ss_pred HHHHhhhhhhHHHHHHHHHHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhheeccc
Q 024838 154 IIYSGAVSSCLNLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGKE 227 (262)
Q Consensus 154 ~~~~gi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~ 227 (262)
+..=.. ..++-..+++.+..+++++...+...+....+.++..++++++++.+||...++...|+.+++....
T Consensus 95 ~~vPa~-iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~ 167 (345)
T KOG2234|consen 95 VSVPAL-IYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSL 167 (345)
T ss_pred HHHHHH-HHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCC
Confidence 111111 2233334777999999999999999999999999999999999999999999999999999984443
No 80
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=96.98 E-value=0.00041 Score=56.51 Aligned_cols=132 Identities=13% Similarity=0.079 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHhccCcccccccchhhHHHHHHHhhhhhhHH
Q 024838 86 GSILTVASCILWSSFYIMQAFTLKKYPAKLSISAWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAVSSCLN 165 (262)
Q Consensus 86 G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~ 165 (262)
.++.+++=++.|+.......|.. . +|.....-+.+.+.+..+.+.++..+ ..+ ...++.-+..|.+= .++
T Consensus 3 ~~liaL~P~l~WGsip~v~~k~G--G-~p~qQ~lGtT~GALifaiiv~~~~~p-~~T-----~~~~iv~~isG~~W-s~G 72 (288)
T COG4975 3 DLLIALLPALGWGSIPLVANKFG--G-KPYQQTLGTTLGALIFAIIVFLFVSP-ELT-----LTIFIVGFISGAFW-SFG 72 (288)
T ss_pred hHHHHHHHHHHhcccceeeeecC--C-ChhHhhhhccHHHHHHHHHHheeecC-ccc-----hhhHHHHHHhhhHh-hhh
Confidence 46788889999998888865522 1 45555544444444444444443222 111 23344444555533 578
Q ss_pred HHHHHHHHhhcCceeeeehhc-hHHHHHHHHHHHHhccccchhhH----hHHHHHHHHHhhheeccc
Q 024838 166 LFIQLWCIEQRGPVFVTIFNP-LTTVIVAVAAYFLVGEKLHTGCI----LGGLIVIIGLYSLLWGKE 227 (262)
Q Consensus 166 ~~~~~~~~~~~~~~~~s~~~~-~~pv~a~~~~~~~~~e~~~~~~~----~G~~li~~g~~l~~~~~~ 227 (262)
+..++++++.++.+++..+.. .+.+-+-+++++.|||+.+..+. +..++++.|+++-.++++
T Consensus 73 Q~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~ 139 (288)
T COG4975 73 QANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDR 139 (288)
T ss_pred hhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeecc
Confidence 999999999999999988764 67788999999999999998886 356788888888876654
No 81
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=96.73 E-value=0.0012 Score=56.78 Aligned_cols=125 Identities=14% Similarity=0.219 Sum_probs=90.2
Q ss_pred HHHHHHHHhhh--hcCChhHHHHHHHHHHHHHHHHHHHHhccCcccccccchhhHHHHHHHhhhhhhHHHHHHHHHHhhc
Q 024838 99 SFYIMQAFTLK--KYPAKLSISAWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAVSSCLNLFIQLWCIEQR 176 (262)
Q Consensus 99 ~~~v~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~ 176 (262)
..++..|+.++ ..+-|++.+..++..+.+.....-.+...+.. +..++..|..++-++++. .++..+-+.++++.
T Consensus 31 ~~~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~--~~~~~~~~~~llpl~~~~-~~~~v~~n~Sl~~v 107 (316)
T KOG1441|consen 31 GVIILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPS--KISSKLPLRTLLPLGLVF-CISHVLGNVSLSYV 107 (316)
T ss_pred eeEEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCC--ccccccchHHHHHHHHHH-HHHHHhcchhhhcc
Confidence 33445678787 55568888888777776666665554333222 222345677777778744 67888899999999
Q ss_pred CceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhheecc
Q 024838 177 GPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGK 226 (262)
Q Consensus 177 ~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~ 226 (262)
+.+..-..-.++|+++.++++++.+|+.+...+.-...++.|+.+..+.+
T Consensus 108 ~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e 157 (316)
T KOG1441|consen 108 PVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTE 157 (316)
T ss_pred chhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeecc
Confidence 99999999999999999999999999998877666666666655555433
No 82
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=96.65 E-value=0.0071 Score=43.82 Aligned_cols=108 Identities=11% Similarity=0.045 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHhccCcccccccchhhHHHHHHHhhhhhhHHHHHHHH
Q 024838 92 ASCILWSSFYIMQAFTLKKYPAKLSISAWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAVSSCLNLFIQLW 171 (262)
Q Consensus 92 ~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~ 171 (262)
+.++.|+..+-+.|+..+..++.... . +..-.... ++ ..|+ .+. .......+-..|+.
T Consensus 3 ~Vg~~WG~Tnpfik~g~~~~~~~~~~-~-~~~~~~~~-----Ll-----~n~~-----y~i-----pf~lNq~GSv~f~~ 60 (113)
T PF10639_consen 3 LVGILWGCTNPFIKRGSSGLEKVKAS-L-QLLQEIKF-----LL-----LNPK-----YII-----PFLLNQSGSVLFFL 60 (113)
T ss_pred eehHHhcCchHHHHHHHhhcCCccch-H-HHHHHHHH-----HH-----HhHH-----HHH-----HHHHHHHHHHHHHH
Confidence 45678999999999988776322221 1 21111111 11 1111 111 22233455678889
Q ss_pred HHhhcCceeeeeh-hchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhh
Q 024838 172 CIEQRGPVFVTIF-NPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYS 221 (262)
Q Consensus 172 ~~~~~~~~~~s~~-~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l 221 (262)
.+.+.+-+.+..+ +.+.-+++++.++++.+|..+...++|+.+++.|+.+
T Consensus 61 ~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~L 111 (113)
T PF10639_consen 61 LLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVAL 111 (113)
T ss_pred HHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeee
Confidence 9999999999988 5899999999999988888899999999999999765
No 83
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=96.58 E-value=0.00021 Score=58.17 Aligned_cols=197 Identities=14% Similarity=0.173 Sum_probs=114.1
Q ss_pred cccchhHHHHhhh-chHHHHHHHHHHHhhhcccccCCCcchhhhh---HHHHhHHHHHHHHhcCCCCCCCCCCCcccCCC
Q 024838 2 KYVHPTFMTAVVN-TIPCMTFIIAVVFRLEIVDVRSPRGIAKILG---TLASLVGVMVIAFYKGPAVPSLKGAPIHLGTN 77 (262)
Q Consensus 2 ~~~s~~~a~~i~~-~~pi~~~ll~~~~~~E~~~~~~~~~~~~~~g---~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~ 77 (262)
+|.+.+.+.-+.. ++-+-+.+++++.++|..+..+. ++| +++.++|+.+-... .++ |. ..
T Consensus 81 ~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~-----IlG~iAliliviG~~lTs~~-~~~-----nk-----~~ 144 (288)
T COG4975 81 QLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQI-----ILGFIALILIVIGIYLTSKQ-DRN-----NK-----EE 144 (288)
T ss_pred eeeeeeccccccchhhHhhceeeeEEEEeccCcchhH-----HHHHHHHHHHHHhheEeeee-ccc-----cc-----cc
Confidence 3444555544444 66677888899999998887761 222 33444444333321 110 00 11
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHhccCcccccccchhhHHHHHHH
Q 024838 78 SVHENWLKGSILTVASCILWSSFYIMQAFTLKKYPAKLSISAWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYS 157 (262)
Q Consensus 78 ~~~~~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (262)
+...+...|....+.+.+.|..|.++.+...-..-+..-..+.-+..+++ .+.. ...+ . . .++..+.-..-
T Consensus 145 ~~~~n~kkgi~~L~iSt~GYv~yvvl~~~f~v~g~saiLPqAiGMv~~al---i~~~-~~~~-~-~---~~K~t~~nii~ 215 (288)
T COG4975 145 ENPSNLKKGIVILLISTLGYVGYVVLFQLFDVDGLSAILPQAIGMVIGAL---ILGF-FKME-K-R---FNKYTWLNIIP 215 (288)
T ss_pred cChHhhhhheeeeeeeccceeeeEeeeccccccchhhhhHHHHHHHHHHH---HHhh-cccc-c-c---hHHHHHHHHhh
Confidence 12445678999999999999999999665431111333333333333322 2222 2111 1 1 12222222333
Q ss_pred hhhhhhHHHHHHHHHHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhH----hHHHHHHHHHhhhee
Q 024838 158 GAVSSCLNLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCI----LGGLIVIIGLYSLLW 224 (262)
Q Consensus 158 gi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~----~G~~li~~g~~l~~~ 224 (262)
|++ =+.+-..+..+.++.|....=.+.-+-.+.+.+-+.++++|+=|..++ +|..+++.|..+.-.
T Consensus 216 G~~-Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~lg~ 285 (288)
T COG4975 216 GLI-WAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAILLGI 285 (288)
T ss_pred HHH-HHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHhhhhhe
Confidence 432 245556666777777766666666666788999999999999988775 688888888776543
No 84
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=96.41 E-value=0.0035 Score=46.78 Aligned_cols=51 Identities=16% Similarity=0.352 Sum_probs=43.7
Q ss_pred cccchhHHHHhhhchHHHHHHHHHH--HhhhcccccCCCcchhhhhHHHHhHHHHHHHH
Q 024838 2 KYVHPTFMTAVVNTIPCMTFIIAVV--FRLEIVDVRSPRGIAKILGTLASLVGVMVIAF 58 (262)
Q Consensus 2 ~~~s~~~a~~i~~~~pi~~~ll~~~--~~~E~~~~~~~~~~~~~~g~~l~~~Gv~~l~~ 58 (262)
+..+.+.+..+....+.++++.++. +++|++++++ ++|+.+.++|++++..
T Consensus 70 ~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~------~iGi~lIi~GV~lv~~ 122 (129)
T PRK02971 70 RYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKK------TLGVACIMLGVWLINL 122 (129)
T ss_pred HhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHH------HHHHHHHHHHHHHhcc
Confidence 4567788888888888888888885 8999999998 9999999999988853
No 85
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=95.98 E-value=0.0075 Score=52.25 Aligned_cols=68 Identities=13% Similarity=0.142 Sum_probs=63.3
Q ss_pred hHHHHHHHHHHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhheecccCcc
Q 024838 163 CLNLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGKEGDQ 230 (262)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~~~ 230 (262)
+++...++.++....++..+++...+-+|+..++.++-+|++++.+.++..+.+.|+++++.++.+++
T Consensus 170 F~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~ 237 (416)
T KOG2765|consen 170 FLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQN 237 (416)
T ss_pred HHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEecccccc
Confidence 56778899999999999999999999999999999999999999999999999999999998876553
No 86
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=95.85 E-value=0.012 Score=41.92 Aligned_cols=50 Identities=18% Similarity=0.129 Sum_probs=40.6
Q ss_pred cccchhHH-HHhhhchHHHHHHHHHHHhhhcccccCCCcchhhhhHHHHhHHHHHHH
Q 024838 2 KYVHPTFM-TAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIA 57 (262)
Q Consensus 2 ~~~s~~~a-~~i~~~~pi~~~ll~~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~~l~ 57 (262)
|+.+.+.+ ++....-.+.+++.++++++|++++.+ ++|+.+.++|++.+=
T Consensus 52 k~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~------~~gl~LiiaGvi~Lk 102 (106)
T COG2076 52 KTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIK------LLGLALILAGVIGLK 102 (106)
T ss_pred hhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHH------HHHHHHHHHHHHHhh
Confidence 33444443 456668889999999999999999998 999999999998773
No 87
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=95.75 E-value=0.014 Score=42.25 Aligned_cols=50 Identities=20% Similarity=0.267 Sum_probs=40.3
Q ss_pred ccchhHHHH-hhhchHHHHHHHHHHHhhhcccccCCCcchhhhhHHHHhHHHHHHHH
Q 024838 3 YVHPTFMTA-VVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAF 58 (262)
Q Consensus 3 ~~s~~~a~~-i~~~~pi~~~ll~~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~~l~~ 58 (262)
+.+.+.+-. ...+.-+.+.++++++++|++++.+ +.|+.+.++|++++-.
T Consensus 53 ~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~------~~gi~lIi~GVi~l~l 103 (110)
T PRK09541 53 YIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPA------IIGMMLICAGVLVINL 103 (110)
T ss_pred hCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHH------HHHHHHHHHHHHHHhc
Confidence 444454444 3557888899999999999999998 9999999999988843
No 88
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=95.74 E-value=0.012 Score=43.27 Aligned_cols=51 Identities=16% Similarity=0.133 Sum_probs=41.4
Q ss_pred cccchhHHHHh-hhchHHHHHHHHHHHhhhcccccCCCcchhhhhHHHHhHHHHHHHH
Q 024838 2 KYVHPTFMTAV-VNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAF 58 (262)
Q Consensus 2 ~~~s~~~a~~i-~~~~pi~~~ll~~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~~l~~ 58 (262)
++.+.+.+-.+ ..+.-+.++++++++++|++++.+ ++|+.+.++|++++-.
T Consensus 52 ~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~------~~gi~lIi~GVi~l~l 103 (120)
T PRK10452 52 KKIALGVAYALWEGIGILFITLFSVLLFDESLSLMK------IAGLTTLVAGIVLIKS 103 (120)
T ss_pred hhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHH------HHHHHHHHHHHHHhhc
Confidence 34555555444 468889999999999999999998 9999999999988743
No 89
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.48 E-value=0.008 Score=51.06 Aligned_cols=120 Identities=19% Similarity=0.286 Sum_probs=87.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHhcc-CcccccccchhhHHHHHHHhhh
Q 024838 82 NWLKGSILTVASCILWSSFYIMQAFTLKKYPAKLSISAWMNCIGAAQSAVYTIIVQP-KAAAWSTTSGIDLWCIIYSGAV 160 (262)
Q Consensus 82 ~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~gi~ 160 (262)
.+..|..+++.+.+..+...++.||..++. ... .. ... ....+. ..+.| +.|.+
T Consensus 18 d~~~G~~LaissS~~Ig~sfilkKkgl~r~-~~~-----------------~~-ra~~gg~~yl----~~~~W--w~G~l 72 (335)
T KOG2922|consen 18 DNIIGLVLAISSSIFIGSSFILKKKGLKRA-GAS-----------------GL-RAGEGGYGYL----KEPLW--WAGML 72 (335)
T ss_pred CceeeeeehhhccEEEeeehhhhHHHHHHH-hhh-----------------cc-cccCCCcchh----hhHHH--HHHHH
Confidence 345899999999999999999998887775 110 00 111 111111 11111 23444
Q ss_pred hhhHHHHHHHHHHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhheecc
Q 024838 161 SSCLNLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGK 226 (262)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~ 226 (262)
...++-...+.+....+++.++.+..++.++..+++..+++|+++....+|++++++|-.+....-
T Consensus 73 tm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~ha 138 (335)
T KOG2922|consen 73 TMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHA 138 (335)
T ss_pred HHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEec
Confidence 555666677777788899999999999999999999999999999999999999999977765433
No 90
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=95.44 E-value=0.12 Score=43.87 Aligned_cols=125 Identities=11% Similarity=0.135 Sum_probs=88.9
Q ss_pred HHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHhccCcccccccchhhHHH----HHHHhhhhhhHHHHHHHHHHhhc
Q 024838 101 YIMQAFTLKKYPAKLSISAWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWC----IIYSGAVSSCLNLFIQLWCIEQR 176 (262)
Q Consensus 101 ~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~gi~~~~~~~~~~~~~~~~~ 176 (262)
..+.++..++++=|...+..+..+-.......-.......+.-+ .+..|.- ++-.++ ++++-..+-|++++++
T Consensus 32 tf~~~~~~~~f~fPLf~ts~h~~v~flfa~~~~~l~~~~~~r~r--~~~sw~~~Lr~~aPtal-ata~DIGLSN~sl~yV 108 (349)
T KOG1443|consen 32 TFYFKWLTKNFHFPLFVTSLHLAVKFLFAALSRRLYQCSVPRAR--VVLSWRDYLRRLAPTAL-ATALDIGLSNWSLEYV 108 (349)
T ss_pred HHHhhhhhcCcCCchHHHHHHHHHHHHHHHHHHHHHhccCCccc--cCCcHHHHHHHhhhhhh-hhhcccccccceeeee
Confidence 33445555556456666666666655555555444443222111 1112222 223444 7788889999999999
Q ss_pred CceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhheecccC
Q 024838 177 GPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGKEG 228 (262)
Q Consensus 177 ~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~ 228 (262)
+.+..++.-...++|..+++.++-=|++++....=..+|..|+++..++..+
T Consensus 109 tlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsTq 160 (349)
T KOG1443|consen 109 TLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKSTQ 160 (349)
T ss_pred eeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEecccc
Confidence 9999999999999999999999999999999988889999999999886654
No 91
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=95.39 E-value=0.016 Score=44.29 Aligned_cols=49 Identities=24% Similarity=0.425 Sum_probs=45.2
Q ss_pred CcccchhHHHHhhhchHHHHHHHHHHHhhhcccccCCCcchhhhhHHHHhHHHHH
Q 024838 1 MKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMV 55 (262)
Q Consensus 1 l~~~s~~~a~~i~~~~pi~~~ll~~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~~ 55 (262)
++++||...++...+-.+++.++++++++|+++.++ +.|+.++++|+++
T Consensus 102 i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~------~~G~~l~~~G~~~ 150 (153)
T PF03151_consen 102 IKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQ------IIGIVLALVGVLL 150 (153)
T ss_pred hhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHH------HHHHHHHHHHHhe
Confidence 468999999999999999999999999999999888 9999999999764
No 92
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=95.37 E-value=0.023 Score=41.00 Aligned_cols=48 Identities=10% Similarity=0.068 Sum_probs=38.7
Q ss_pred ccchhHH-HHhhhchHHHHHHHHHHHhhhcccccCCCcchhhhhHHHHhHHHHHH
Q 024838 3 YVHPTFM-TAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVI 56 (262)
Q Consensus 3 ~~s~~~a-~~i~~~~pi~~~ll~~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~~l 56 (262)
+.+.+.+ ++.....-+.+.+++++++||++++.+ +.|+.+.++|++.+
T Consensus 58 ~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~------~~gi~lIi~GVi~l 106 (109)
T PRK10650 58 GIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKG------WIGLVLLLAGMVMI 106 (109)
T ss_pred hCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHH------HHHHHHHHHHHHHh
Confidence 3444444 345567888999999999999999998 99999999998775
No 93
>PRK11431 multidrug efflux system protein; Provisional
Probab=95.02 E-value=0.03 Score=40.13 Aligned_cols=47 Identities=11% Similarity=0.033 Sum_probs=38.6
Q ss_pred cchhHH-HHhhhchHHHHHHHHHHHhhhcccccCCCcchhhhhHHHHhHHHHHH
Q 024838 4 VHPTFM-TAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVI 56 (262)
Q Consensus 4 ~s~~~a-~~i~~~~pi~~~ll~~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~~l 56 (262)
.+.+.+ ++...+.-+.+.+++++++||++++.+ ++|+.+.++|++.+
T Consensus 53 ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~------~~gi~lIi~GVv~l 100 (105)
T PRK11431 53 LPVGTAYAVWTGIGAVGAAITGIVLLGESASPAR------LLSLALIVAGIIGL 100 (105)
T ss_pred CCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHH------HHHHHHHHHHHHhh
Confidence 344443 345568888999999999999999998 99999999998877
No 94
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=94.93 E-value=0.054 Score=44.19 Aligned_cols=137 Identities=9% Similarity=0.048 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh-cC-C---------hhHHHHHHHHHHHHHHHHHHHHhccCcccccccchhhHHHHHHH
Q 024838 89 LTVASCILWSSFYIMQAFTLKK-YP-A---------KLSISAWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYS 157 (262)
Q Consensus 89 l~l~a~~~~a~~~v~~~~~~~~-~~-~---------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (262)
++..--+||-.|.+.++|..+. +. + ...+.+++|....+..=++..+... ...... ..|.. +.+
T Consensus 17 ca~GifvCYF~yGI~QEkitrGkYg~~g~~~E~FTfalaLVf~qC~~N~vfAkvl~~ir~~--~~~D~t--~~~~Y-aAc 91 (337)
T KOG1580|consen 17 CAGGIFVCYFVYGIQQEKITRGKYGLPGESIEKFTFALALVFFQCTANTVFAKVLFLIRKK--TEIDNT--PTKMY-AAC 91 (337)
T ss_pred EecchhheehhhhhHHHHhhccccCCCCcchheehHHHHHHHHHHHHHHHHHHhheeeccc--ccccCC--cchHH-HHH
Confidence 3344456888999999887643 21 1 2345555555555544433332221 111111 11222 222
Q ss_pred hhhhhhHHHHHHHHHHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhheecccCccc
Q 024838 158 GAVSSCLNLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGKEGDQH 231 (262)
Q Consensus 158 gi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~~~~ 231 (262)
. ....++...-|.+++..+=...-+--.-.|+-.+++++++.+.+.++..+....+|+.|+.+..++++|...
T Consensus 92 s-~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~g 164 (337)
T KOG1580|consen 92 S-ASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKVGG 164 (337)
T ss_pred H-HHHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhccccccCC
Confidence 2 244566677788999988777777778889999999999999999999999999999999999987665543
No 95
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=94.71 E-value=1.3 Score=36.74 Aligned_cols=103 Identities=11% Similarity=-0.079 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHhccCcccccccchhhHHHHHHHhhhhhhHH
Q 024838 86 GSILTVASCILWSSFYIMQAFTLKKYPAKLSISAWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAVSSCLN 165 (262)
Q Consensus 86 G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~ 165 (262)
...+.+.+.++--...-+.|.+.... .+...+.++..+++++++++.-.. ....+..+|..++..|+ +.+..
T Consensus 13 p~~~ll~amvsiq~Gas~Ak~LFP~v-G~~g~t~lRl~~aaLIll~l~RPw------r~r~~~~~~~~~~~yGv-sLg~M 84 (292)
T COG5006 13 PILALLVAMVSIQSGASFAKSLFPLV-GAAGVTALRLAIAALILLALFRPW------RRRLSKPQRLALLAYGV-SLGGM 84 (292)
T ss_pred cHHHHHHHHHHHHhhHHHHHHHcccc-ChhhHHHHHHHHHHHHHHHHhhHH------HhccChhhhHHHHHHHH-HHHHH
Confidence 57778888888888888887777776 888899999999988887765421 12234567888888887 55556
Q ss_pred HHHHHHHHhhcCceeeeehhchHHHHHHHHH
Q 024838 166 LFIQLWCIEQRGPVFVTIFNPLTTVIVAVAA 196 (262)
Q Consensus 166 ~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~ 196 (262)
..+++.++++++-..+-.+..+-|....+++
T Consensus 85 Nl~FY~si~riPlGiAVAiEF~GPL~vA~~~ 115 (292)
T COG5006 85 NLLFYLSIERIPLGIAVAIEFTGPLAVALLS 115 (292)
T ss_pred HHHHHHHHHhccchhhhhhhhccHHHHHHHh
Confidence 6688899999999999999999887655543
No 96
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=94.48 E-value=0.029 Score=44.46 Aligned_cols=63 Identities=13% Similarity=0.247 Sum_probs=58.2
Q ss_pred HHHHHHHHHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhheeccc
Q 024838 165 NLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGKE 227 (262)
Q Consensus 165 ~~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~ 227 (262)
+-+.|..++++++++.++.+..-.-.|..+++++++++++...+++.+.+.+.|++++.|..+
T Consensus 66 aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN 128 (290)
T KOG4314|consen 66 ANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADN 128 (290)
T ss_pred CCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccc
Confidence 345889999999999999999999999999999999999999999999999999999887654
No 97
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=94.39 E-value=0.27 Score=42.50 Aligned_cols=147 Identities=14% Similarity=0.065 Sum_probs=90.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHH-HhccCcc-cccccchhhHHHHHHHhh
Q 024838 82 NWLKGSILTVASCILWSSFYIMQAFTLKKYPAKLSISAWMNCIGAAQSAVYTI-IVQPKAA-AWSTTSGIDLWCIIYSGA 159 (262)
Q Consensus 82 ~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~gi 159 (262)
+...|+++-.+++++.+.+++=.|| .|+. +..+.=..+.+++-++.-.+.. +..++.. -+...+...+......|+
T Consensus 4 ~ii~Gii~h~iGg~~~~sfy~P~kk-vk~W-sWEs~Wlv~gi~swli~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~G~ 81 (344)
T PF06379_consen 4 AIILGIIFHAIGGFASGSFYVPFKK-VKGW-SWESYWLVQGIFSWLIVPWLWALLAIPDFFSIYSATPASTLFWTFLFGV 81 (344)
T ss_pred hHHHHHHHHHHHHHHhhhhccchhh-cCCc-cHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHhCChhHHHHHHHHHH
Confidence 4568999999999999999999877 5566 6665555555555444433332 2333222 122223345555555665
Q ss_pred hhhhHHHHHHHHHHhhcCceee-eehhchHHHHHHHHHHHHhcc-------ccchhhHhHHHHHHHHHhhheecccCccc
Q 024838 160 VSSCLNLFIQLWCIEQRGPVFV-TIFNPLTTVIVAVAAYFLVGE-------KLHTGCILGGLIVIIGLYSLLWGKEGDQH 231 (262)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~-s~~~~~~pv~a~~~~~~~~~e-------~~~~~~~~G~~li~~g~~l~~~~~~~~~~ 231 (262)
+= +++-..|-.++|++|.+.. ++..-+.-+++.++-.++.++ .-....++|.++++.|+.+.-+.-..+++
T Consensus 82 lW-GIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~~Ke~ 160 (344)
T PF06379_consen 82 LW-GIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGSMKEK 160 (344)
T ss_pred HH-hcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHHhhhh
Confidence 33 4666788899999996653 333344445555554444332 22346678999999999987655444333
No 98
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.34 E-value=0.77 Score=39.28 Aligned_cols=133 Identities=11% Similarity=0.108 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHH--HHHHHHHHHHHHHHHHhccCcccccccchhhHHHHHHHhhhhhhH
Q 024838 87 SILTVASCILWSSFYIMQAFTLKKYPAKLSISA--WMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAVSSCL 164 (262)
Q Consensus 87 ~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~ 164 (262)
...++.=|++-..-.+..|....+++-|..... .+.+.+.+.....-...--+.++......+.|..+-.+- ..
T Consensus 14 l~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~lv~~~~l~~~~~kk~~P~~~lf----~~ 89 (314)
T KOG1444|consen 14 LLSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLGLVNFRPLDLRTAKKWFPVSLLF----VG 89 (314)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhceeecCCcChHHHHHHccHHHHH----HH
Confidence 333444444445556667777777754444444 788777776666554322233333333333333322211 11
Q ss_pred HHHHHHHHHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhhe
Q 024838 165 NLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLL 223 (262)
Q Consensus 165 ~~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~ 223 (262)
....-..+++++......++-.++|+++++...++++-+++...+.....+++|.....
T Consensus 90 ~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~ 148 (314)
T KOG1444|consen 90 MLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAA 148 (314)
T ss_pred HHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhc
Confidence 22333478999999999999999999999999999999999999999999999977654
No 99
>PRK02237 hypothetical protein; Provisional
Probab=93.39 E-value=0.31 Score=34.68 Aligned_cols=46 Identities=9% Similarity=0.195 Sum_probs=38.9
Q ss_pred eeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhheecc
Q 024838 181 VTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGK 226 (262)
Q Consensus 181 ~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~ 226 (262)
.+.+.-+..+.++++++.+-+++|+.+.++|.++++.|..+..+..
T Consensus 62 YAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~p 107 (109)
T PRK02237 62 YAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYAP 107 (109)
T ss_pred HHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheecC
Confidence 3455666778899999999999999999999999999988776544
No 100
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=93.17 E-value=0.098 Score=36.61 Aligned_cols=41 Identities=15% Similarity=0.023 Sum_probs=21.5
Q ss_pred cccchhHH-HHhhhchHHHHHHHHHHHhhhcccccCCCcchhhhhHHH
Q 024838 2 KYVHPTFM-TAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLA 48 (262)
Q Consensus 2 ~~~s~~~a-~~i~~~~pi~~~ll~~~~~~E~~~~~~~~~~~~~~g~~l 48 (262)
|+.+.+.+ .+...+..+.+.++++++++|++++++ +.|+.+
T Consensus 51 ~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~------~~gi~l 92 (93)
T PF00893_consen 51 KKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSK------WLGIGL 92 (93)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHH--------------HHHHHH
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH------Hhheee
Confidence 45556666 445668899999999999999999999 888765
No 101
>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine. Transport is dependent on glucose and a proton gradient [].
Probab=92.99 E-value=0.11 Score=43.96 Aligned_cols=130 Identities=15% Similarity=0.147 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHhcc-------Ccccc-ccc--chhhHHHHHHHhhh
Q 024838 91 VASCILWSSFYIMQAFTLKKYPAKLSISAWMNCIGAAQSAVYTIIVQP-------KAAAW-STT--SGIDLWCIIYSGAV 160 (262)
Q Consensus 91 l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-------~~~~~-~~~--~~~~~~~~~~~gi~ 160 (262)
+++.+||+.+...+|..-|+...+ ....+=+.++.++..++..+.-+ +.+.+ +.. .+..-+..+..|-+
T Consensus 2 ~itmlcwGSW~nt~kL~~r~gR~~-qh~Y~DYsig~lL~All~A~TlGs~G~~~~~g~~Fl~qL~Q~n~~sv~~A~aGGv 80 (336)
T PF07168_consen 2 VITMLCWGSWPNTQKLAERRGRLP-QHFYWDYSIGNLLAALLIAFTLGSIGESTPEGPNFLTQLSQANWPSVLFAMAGGV 80 (336)
T ss_pred eeehhhhcChHHHHHHHHhcCCcc-ceehhHHHHHHHHHHHHHHHhccccCCCCCCCccHHHHHhcCChHHHHHHHHhhH
Confidence 567789999999988877665222 22333333333333333222111 11111 110 11222333344434
Q ss_pred hhhHHHHHHHHHHhhcCceeeeehhc-hHHHHHHHHHHHHhccccc--hhhHhHHHHHHHHHhhh
Q 024838 161 SSCLNLFIQLWCIEQRGPVFVTIFNP-LTTVIVAVAAYFLVGEKLH--TGCILGGLIVIIGLYSL 222 (262)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~s~~~~-~~pv~a~~~~~~~~~e~~~--~~~~~G~~li~~g~~l~ 222 (262)
..-++-.+..+++...|.+.+-++.. +..+.++++.|+ ++.+.+ ...+.|.+++++++++-
T Consensus 81 vfnlgNillq~aia~aGmSVafpvg~glalVlGv~~NYf-ld~~~n~a~iLF~GV~cf~iAI~lg 144 (336)
T PF07168_consen 81 VFNLGNILLQAAIAFAGMSVAFPVGIGLALVLGVTLNYF-LDPKINRAEILFPGVACFLIAIILG 144 (336)
T ss_pred hhhhHHHHHHHHHHHhcceeeeeeecceEEEEeeeeeee-ccCCCCCceEEEccHHHHHHHHHHH
Confidence 45577778888888888777665542 233456666665 455554 35667999998888874
No 102
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.32 E-value=0.24 Score=41.45 Aligned_cols=110 Identities=16% Similarity=0.147 Sum_probs=80.4
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHhcc-----Cccccccc--chhhHHHHHHHhhhhhhHHHHHHHHHHhhcCceeeeehh
Q 024838 113 AKLSISAWMNCIGAAQSAVYTIIVQP-----KAAAWSTT--SGIDLWCIIYSGAVSSCLNLFIQLWCIEQRGPVFVTIFN 185 (262)
Q Consensus 113 ~~~~~~~~~~~~~~v~~~~~~~~~~~-----~~~~~~~~--~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~s~~~ 185 (262)
.|.....+++++...+++........ +++..+.. ...+..-+.+ ...+.....+.++++.+.+..-+-.
T Consensus 60 ~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vlplsv----Vfi~mI~fnnlcL~yVgVaFYyvgR 135 (347)
T KOG1442|consen 60 APLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATARQVLPLSV----VFILMISFNNLCLKYVGVAFYYVGR 135 (347)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHHhhcchhh----eeeeehhccceehhhcceEEEEecc
Confidence 57788888999998888888765332 12222211 1112222211 1123445678899999999999999
Q ss_pred chHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhheecc
Q 024838 186 PLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGK 226 (262)
Q Consensus 186 ~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~ 226 (262)
.+..+|++++.+++++++-+.....+|.+|+.|..+-...+
T Consensus 136 sLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGvdqE 176 (347)
T KOG1442|consen 136 SLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGVDQE 176 (347)
T ss_pred chhhhHHHHhHHhhcccccccccceeehhheehheeccccc
Confidence 99999999999999999999999999999999988876544
No 103
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=91.68 E-value=5.7 Score=33.97 Aligned_cols=129 Identities=9% Similarity=0.054 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHhhhh--------cCChhHHHHHHHHHHHHHHHHHHHHhccCcccccccchhhHHHHHHHhhhhhhHHH
Q 024838 95 ILWSSFYIMQAFTLKK--------YPAKLSISAWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAVSSCLNL 166 (262)
Q Consensus 95 ~~~a~~~v~~~~~~~~--------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~ 166 (262)
..+-.+.+++++++++ +.++.-..+.+-+.+.+............ ......|....+.++ ...++-
T Consensus 24 ~t~l~~gVlQEki~T~~y~~~~~rF~~~~fL~~~q~l~~~~~s~~~l~~~k~~-----~~~~apl~~y~~is~-tn~~s~ 97 (327)
T KOG1581|consen 24 ATFLTWGVLQEKIMTRPYGEDGERFEHSLFLVFCQRLVALLVSYAMLKWWKKE-----LSGVAPLYKYSLISF-TNTLSS 97 (327)
T ss_pred HHHHHHHHHhcceeecccCcccccccccHHHHHHHHHHHHHHHHHHHhccccc-----CCCCCchhHHhHHHH-Hhhcch
Confidence 3555667777776532 23566667777777766664333322111 111233444445554 455677
Q ss_pred HHHHHHHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhheecccCc
Q 024838 167 FIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGKEGD 229 (262)
Q Consensus 167 ~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~~ 229 (262)
.|.+.++++++=....+.-....+-.++++.++.+.+.+....+-+.++-+|+.+....++..
T Consensus 98 ~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~ 160 (327)
T KOG1581|consen 98 WCGYEALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSD 160 (327)
T ss_pred HHHHHHHHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCC
Confidence 789999999998888888888888899999999999999999999999999998887665544
No 104
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=90.57 E-value=0.39 Score=34.13 Aligned_cols=44 Identities=14% Similarity=0.273 Sum_probs=37.5
Q ss_pred ehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhheecc
Q 024838 183 IFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGK 226 (262)
Q Consensus 183 ~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~ 226 (262)
.+.-+..+.++++++.+-+++|+.+.++|..+++.|..+..+..
T Consensus 62 AYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~P 105 (107)
T PF02694_consen 62 AYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFAP 105 (107)
T ss_pred HhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEecC
Confidence 34455677889999999999999999999999999988877654
No 105
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=89.97 E-value=12 Score=32.54 Aligned_cols=203 Identities=16% Similarity=0.177 Sum_probs=109.5
Q ss_pred hchHHHHHHHHHHHhhhcc-cccCCCcchhhhhHHHHhHHHHHHHHhcCCCCCCCCCCCcccCCCcccchhhHHHHHHHH
Q 024838 14 NTIPCMTFIIAVVFRLEIV-DVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVHENWLKGSILTVA 92 (262)
Q Consensus 14 ~~~pi~~~ll~~~~~~E~~-~~~~~~~~~~~~g~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~ 92 (262)
.+...+..++-.++.++-- -..++-+...++|+++.++|+.+.... |.. ++...+ .+.++.+...|.+++++
T Consensus 108 Gl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~A-G~~----Ke~~~~--~~~~efn~~kGl~iAv~ 180 (344)
T PF06379_consen 108 GLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKA-GSM----KEKELG--EEAKEFNFKKGLIIAVL 180 (344)
T ss_pred HHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHH-HHh----hhhhhc--cchhhhhhhhhHHHHHH
Confidence 3444455555444433210 012334556789999999999888752 211 111111 11245667789999999
Q ss_pred HHHHHHHHHHHHHHhh------hhc-CChhH----HHHHHHHHHHHHHHHHHHHh--c-cCcc---cccccc---hhhHH
Q 024838 93 SCILWSSFYIMQAFTL------KKY-PAKLS----ISAWMNCIGAAQSAVYTIIV--Q-PKAA---AWSTTS---GIDLW 152 (262)
Q Consensus 93 a~~~~a~~~v~~~~~~------~~~-~~~~~----~~~~~~~~~~v~~~~~~~~~--~-~~~~---~~~~~~---~~~~~ 152 (262)
+.++-|..++-..... ... .++.. .....+.-+.+.-+.+.++. . ++.. ++.... ..++.
T Consensus 181 sGv~Sa~fn~g~~ag~pi~~~a~a~G~~~l~~~l~~~vvv~~GGf~tN~~yc~~~l~~~k~~s~~~d~~~~~~~~~~N~~ 260 (344)
T PF06379_consen 181 SGVMSACFNFGLDAGKPIHEAAVAAGVNPLYANLPVYVVVLWGGFITNLIYCLILLAKNKNWSWKGDYSVAKPPLLKNYL 260 (344)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHcCCCcHHHhCchhhhhhhhHHHHHHHHHHHHHhhcCCCccccccccccchhHHHHH
Confidence 9998887777643211 000 01111 11222333444444444332 1 1211 111101 13444
Q ss_pred HHHHHhhhhhhHHHHHHHHHHhhcCce----eeeehhchHHHHHHHHHHHHhcccc------chhhHhHHHHHHHHHhhh
Q 024838 153 CIIYSGAVSSCLNLFIQLWCIEQRGPV----FVTIFNPLTTVIVAVAAYFLVGEKL------HTGCILGGLIVIIGLYSL 222 (262)
Q Consensus 153 ~~~~~gi~~~~~~~~~~~~~~~~~~~~----~~s~~~~~~pv~a~~~~~~~~~e~~------~~~~~~G~~li~~g~~l~ 222 (262)
..+..|.+ =...+++|-++-.+++.. --.+.+.+..+++-+++.+ ++|.= -...++|+++++.++.++
T Consensus 261 ~~aLaG~l-Wy~qfffYg~G~s~lg~~~~~~sW~i~ma~~vl~snvwGl~-lkEWKg~s~kt~~vl~~G~~vlI~s~~iv 338 (344)
T PF06379_consen 261 FCALAGVL-WYSQFFFYGMGESKLGASGPFSSWAIHMALIVLFSNVWGLI-LKEWKGASKKTIRVLVLGIAVLILSVVIV 338 (344)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHH-HHHhccCCcccHHHHHHHHHHHHHHHHHH
Confidence 44444443 246667777777777743 3456777888888888886 77733 334468988888887776
Q ss_pred eec
Q 024838 223 LWG 225 (262)
Q Consensus 223 ~~~ 225 (262)
-++
T Consensus 339 G~G 341 (344)
T PF06379_consen 339 GYG 341 (344)
T ss_pred hcc
Confidence 443
No 106
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=89.38 E-value=0.4 Score=40.34 Aligned_cols=64 Identities=11% Similarity=0.095 Sum_probs=55.0
Q ss_pred hhhHHHHHHHHHHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhhee
Q 024838 161 SSCLNLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLW 224 (262)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~ 224 (262)
|-..+-.+.+.++....++...++.--..+|+.+++.-+++..++..+|+|...+.+|+..+-.
T Consensus 95 ~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~ 158 (372)
T KOG3912|consen 95 CDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGS 158 (372)
T ss_pred HHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeee
Confidence 3344556777888888888888888888999999999999999999999999999999887653
No 107
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=89.09 E-value=0.12 Score=42.83 Aligned_cols=136 Identities=14% Similarity=0.060 Sum_probs=91.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhcC-ChhHHHHHHHHHHHHHHHHHHHHhccCcccccccchhhHHHHHHHhhhh
Q 024838 83 WLKGSILTVASCILWSSFYIMQAFTLKKYP-AKLSISAWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAVS 161 (262)
Q Consensus 83 ~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~ 161 (262)
..+|..+.-.-.++..........+.++.. .|....+..+..-+++-.+++++..+ .. ..-|-..+.++++-
T Consensus 16 ~li~~~LGQiLSL~~t~~a~tss~la~k~iN~Pt~QtFl~Y~LLalVY~~~~~fR~~---~~----~~~~~hYilla~~D 88 (336)
T KOG2766|consen 16 TLIGLGLGQILSLLITSTAFTSSELARKGINAPTSQTFLNYVLLALVYGPIMLFRRK---YI----KAKWRHYILLAFVD 88 (336)
T ss_pred hhheeeHHHHHHHHHHcchhhhHHHHhccCCCccHHHHHHHHHHHHHHhhHHHhhhH---HH----HHHHHHhhheeEEe
Confidence 345555554445555555555555566643 46666676666666666666664321 11 11233334444422
Q ss_pred hhHHHHHHHHHHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhheecc
Q 024838 162 SCLNLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGK 226 (262)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~ 226 (262)
.=+-++...|.++.+.+.+.++.....+...+++|++++.+..+.++.|.++++.|+.++....
T Consensus 89 -VEaNy~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sD 152 (336)
T KOG2766|consen 89 -VEANYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSD 152 (336)
T ss_pred -ecccEEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEee
Confidence 3344455688899999999999999999999999999999999999999999999999977544
No 108
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=88.63 E-value=1.3 Score=31.43 Aligned_cols=58 Identities=16% Similarity=0.159 Sum_probs=46.0
Q ss_pred HHHHHHHHHhhcCceeeeeh-hchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhh
Q 024838 165 NLFIQLWCIEQRGPVFVTIF-NPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSL 222 (262)
Q Consensus 165 ~~~~~~~~~~~~~~~~~s~~-~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~ 222 (262)
+-.+|+.-+++.+-+.+..+ +.+.-.|+.+++..+-.|......++|..++++|+++.
T Consensus 65 gSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lc 123 (125)
T KOG4831|consen 65 GSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLC 123 (125)
T ss_pred hHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhe
Confidence 33577788888888777665 45677899999998666666888899999999998874
No 109
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=88.49 E-value=1.3 Score=31.27 Aligned_cols=46 Identities=13% Similarity=0.219 Sum_probs=39.0
Q ss_pred eeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhheecc
Q 024838 181 VTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGK 226 (262)
Q Consensus 181 ~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~ 226 (262)
.+.+.-+..+.+.++.+++-+..|+.+.++|..++++|...+.+..
T Consensus 61 YAAYGGvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~p 106 (109)
T COG1742 61 YAAYGGVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFGP 106 (109)
T ss_pred HHHhcchHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeCC
Confidence 3455667788899999999999999999999999999977776653
No 110
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=87.76 E-value=0.67 Score=32.86 Aligned_cols=33 Identities=21% Similarity=0.352 Sum_probs=27.9
Q ss_pred HHHHHHHHHhccccchhhHhHHHHHHHHHhhhe
Q 024838 191 IVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLL 223 (262)
Q Consensus 191 ~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~ 223 (262)
+-..++.+.++|++++....|.++++.+++.+.
T Consensus 75 vF~~Fsv~~l~E~l~~n~l~af~~i~~av~fiF 107 (108)
T PF04342_consen 75 VFAPFSVFYLGEPLKWNYLWAFLCILGAVYFIF 107 (108)
T ss_pred eeHHHHHHHhCCCccHHHHHHHHHHHHhhheee
Confidence 345677889999999999999999999887654
No 111
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=87.36 E-value=0.2 Score=36.30 Aligned_cols=47 Identities=17% Similarity=0.237 Sum_probs=36.5
Q ss_pred ccchhHHHHhh-hchHHHHHHHHHHHhhhcccccCCCcchhhhhHHHHhHHHHH
Q 024838 3 YVHPTFMTAVV-NTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMV 55 (262)
Q Consensus 3 ~~s~~~a~~i~-~~~pi~~~ll~~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~~ 55 (262)
..+.+.+..+. .+.=++|++.++++.+|..++++ ++|+.+.++|+.+
T Consensus 64 ~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~------~~G~~Li~~Gv~L 111 (113)
T PF10639_consen 64 SADLSLAVPIANSLAFVFTALTGWLLGEEVISRRT------WLGMALILAGVAL 111 (113)
T ss_pred cCCceeeehHHhHHHHHHHHHHHHHhcCcccchhH------HHHHHHHHcCeee
Confidence 34555555564 57888999999988877777777 9999999999764
No 112
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.84 E-value=1.6 Score=30.45 Aligned_cols=36 Identities=17% Similarity=0.249 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhccccchhhHhHHHHHHHHHhhhee
Q 024838 189 TVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLW 224 (262)
Q Consensus 189 pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~ 224 (262)
..+-+.++.+.++|++.+..+.|..++..|+++..+
T Consensus 80 L~iFv~Fsvfyl~epl~~~~l~a~~~i~gav~fiFr 115 (116)
T COG3169 80 LAIFVPFSVFYLKEPLRWNYLWAFLLILGAVYFIFR 115 (116)
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHhcc
Confidence 344567899999999999999999999999988764
No 113
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=86.84 E-value=1.2 Score=33.51 Aligned_cols=16 Identities=25% Similarity=0.619 Sum_probs=9.5
Q ss_pred hhHhHHHHHHHHHhhh
Q 024838 207 GCILGGLIVIIGLYSL 222 (262)
Q Consensus 207 ~~~~G~~li~~g~~l~ 222 (262)
..++|..+++.|++..
T Consensus 88 ~~i~g~~~~~~G~~~i 103 (136)
T PF08507_consen 88 SIIIGLLLFLVGVIYI 103 (136)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455666677775553
No 114
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=84.68 E-value=35 Score=31.91 Aligned_cols=19 Identities=5% Similarity=-0.069 Sum_probs=10.4
Q ss_pred ehhchHHHHHHHHHHHHhc
Q 024838 183 IFNPLTTVIVAVAAYFLVG 201 (262)
Q Consensus 183 ~~~~~~pv~a~~~~~~~~~ 201 (262)
......|+-+.++|.+.-.
T Consensus 351 ~~~g~~~lGsll~G~la~~ 369 (524)
T PF05977_consen 351 VFFGGMPLGSLLWGFLADH 369 (524)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444456666666665433
No 115
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=78.34 E-value=28 Score=31.51 Aligned_cols=128 Identities=13% Similarity=0.111 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHhccCcccccccchhhHHHHHHHhhhhh----hHHHHHH
Q 024838 94 CILWSSFYIMQAFTLKKYPAKLSISAWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAVSS----CLNLFIQ 169 (262)
Q Consensus 94 ~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~----~~~~~~~ 169 (262)
.+.|++.-.+...+.++. +|-..+....+.++++.+.+.... .. ..-...+...|.+-+ ..+-.+.
T Consensus 74 ~i~YG~sKf~~G~~sDr~-npr~fm~~gLilsai~nil~Gfs~-----s~----~~~~~l~~lng~fQg~Gwpp~~~~i~ 143 (448)
T COG2271 74 SITYGVSKFVMGVLSDRS-NPRYFMAFGLILSAIVNILFGFSP-----SL----FLFAVLWVLNGWFQGMGWPPCARTIT 143 (448)
T ss_pred HHHHHHHHHHhhhhcccC-CCceeehHHHHHHHHHHHHHhhhh-----HH----HHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 356776666666666666 888888888888888777776621 11 011222223333322 1122233
Q ss_pred HHHHhhcCceeeeehhc-------hHHHHHHHHHHHHhc-cccchhhHhHHHHHHHHHhhheecccCcccc
Q 024838 170 LWCIEQRGPVFVTIFNP-------LTTVIVAVAAYFLVG-EKLHTGCILGGLIVIIGLYSLLWGKEGDQHC 232 (262)
Q Consensus 170 ~~~~~~~~~~~~s~~~~-------~~pv~a~~~~~~~~~-e~~~~~~~~G~~li~~g~~l~~~~~~~~~~~ 232 (262)
.+--|+..-+..++-+. +.|+++.+ +++.++ ..-......|++.++.|+++..+.|.++++.
T Consensus 144 ~Wfsr~eRG~~~siWn~shNiGGal~~~~~~l-a~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~ 213 (448)
T COG2271 144 HWFSRKERGTWWSIWNTSHNIGGALAPLVALL-AFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSE 213 (448)
T ss_pred HHcCccccCceEEEehhhhhcccchHHHHHHH-HHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCcccc
Confidence 34455555555555543 34554444 555554 3334445678899999999988777666553
No 116
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=78.27 E-value=73 Score=31.38 Aligned_cols=44 Identities=18% Similarity=0.193 Sum_probs=31.1
Q ss_pred hHHHHhhhchHHHHHHHHHHHhhhcccccCCCcchhhhhHHHHhHHHHHH
Q 024838 7 TFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVI 56 (262)
Q Consensus 7 ~~a~~i~~~~pi~~~ll~~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~~l 56 (262)
+.+.++..+.|+-.++++.....+|.+.+. +.+.+..++|.+.+
T Consensus 11 gRa~il~~l~PFg~af~~a~~~~~~~~~~~------~~~~~~~~~G~~t~ 54 (764)
T TIGR02865 11 GRAVIVSPMAPFGIAFLAAVLLAKKGGDKA------FFSALGVLLGAISI 54 (764)
T ss_pred hHHHHhcCCCchHHHHHHHHHHhhcccchH------HHHHHHHHHHHHHh
Confidence 567888899999999999988755543333 56666666665544
No 117
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=77.44 E-value=8.6 Score=31.50 Aligned_cols=60 Identities=17% Similarity=0.332 Sum_probs=54.9
Q ss_pred HHHHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhheecccCc
Q 024838 170 LWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGKEGD 229 (262)
Q Consensus 170 ~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~~ 229 (262)
.+++++++....+++-+++.+.......++||.+.+-.......+++...+...|+..+.
T Consensus 86 SKsLqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q~ 145 (309)
T COG5070 86 SKSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQA 145 (309)
T ss_pred ccceeeeeeeHHHHhccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchhhH
Confidence 478999999999999999999999999999999999999999999999999988877543
No 118
>PRK06638 NADH:ubiquinone oxidoreductase subunit J; Provisional
Probab=73.72 E-value=45 Score=26.76 Aligned_cols=34 Identities=15% Similarity=0.168 Sum_probs=23.0
Q ss_pred HHHHHHHhccccchhhHhHHHHHH--HHHhhheecc
Q 024838 193 AVAAYFLVGEKLHTGCILGGLIVI--IGLYSLLWGK 226 (262)
Q Consensus 193 ~~~~~~~~~e~~~~~~~~G~~li~--~g~~l~~~~~ 226 (262)
-.+|..++.+..-+....|..+.+ .|.+...+++
T Consensus 133 ~~iG~~L~t~y~l~fe~~silLLvAmIGAI~La~~~ 168 (198)
T PRK06638 133 KAIGILLFTDYLLPFELASVLLLVAMVGAIVLARRE 168 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 455777888888888888876554 5555555443
No 119
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=72.56 E-value=68 Score=28.28 Aligned_cols=20 Identities=25% Similarity=0.413 Sum_probs=8.1
Q ss_pred HHHHHHHhhhhhhHHHHHHH
Q 024838 151 LWCIIYSGAVSSCLNLFIQL 170 (262)
Q Consensus 151 ~~~~~~~gi~~~~~~~~~~~ 170 (262)
++.+.....+...+++.+..
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~ 81 (385)
T PF03547_consen 62 LWFIPVFAFIIFILGLLLGF 81 (385)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444443
No 120
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=70.60 E-value=48 Score=30.29 Aligned_cols=15 Identities=20% Similarity=0.368 Sum_probs=7.8
Q ss_pred HhHHHHHHHHHhhhe
Q 024838 209 ILGGLIVIIGLYSLL 223 (262)
Q Consensus 209 ~~G~~li~~g~~l~~ 223 (262)
+.|+.+++++++...
T Consensus 417 ~~~~~~~i~~~~~~~ 431 (476)
T PLN00028 417 LMGVMIIACTLPVAF 431 (476)
T ss_pred HHHHHHHHHHHHHHh
Confidence 445555555555543
No 121
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=70.11 E-value=18 Score=33.05 Aligned_cols=47 Identities=2% Similarity=0.016 Sum_probs=29.2
Q ss_pred eeehhchHHHHHHHHHHHHhcc-----ccchhhHhHHHHHHHHHhhheeccc
Q 024838 181 VTIFNPLTTVIVAVAAYFLVGE-----KLHTGCILGGLIVIIGLYSLLWGKE 227 (262)
Q Consensus 181 ~s~~~~~~pv~a~~~~~~~~~e-----~~~~~~~~G~~li~~g~~l~~~~~~ 227 (262)
..++..+.-+.=.++..+--.+ .++..|++...++++|++++.+.++
T Consensus 226 f~lYli~Ygi~RF~iEflR~d~~~~~~gl~~~Q~lSl~~il~gl~~~~~~~~ 277 (460)
T PRK13108 226 FGFYVAFYCAGRFCVELLRDDPATLIAGIRINSFTSTFVFIGAVVYIILAPK 277 (460)
T ss_pred HHHHHHHHHHHHHHhhhhccCchhhhcCccHHHHHHHHHHHHHHHHHHHhhc
Confidence 3445555555545555432222 2688899999999999877655443
No 122
>COG4657 RnfA Predicted NADH:ubiquinone oxidoreductase, subunit RnfA [Energy production and conversion]
Probab=69.50 E-value=45 Score=25.81 Aligned_cols=49 Identities=14% Similarity=0.155 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhh-----cCChhHHHHHHHHHHHHHHHHH
Q 024838 84 LKGSILTVASCILWSSFYIMQAFTLKK-----YPAKLSISAWMNCIGAAQSAVY 132 (262)
Q Consensus 84 ~~G~~l~l~a~~~~a~~~v~~~~~~~~-----~~~~~~~~~~~~~~~~v~~~~~ 132 (262)
.......+.+++.++...++-....++ .|.|.....+.++.+++..+.+
T Consensus 131 ~qsv~~gf~a~lGfslvmvlfA~iRER~~~advP~~frG~~ialitagLmSlaF 184 (193)
T COG4657 131 LQSVVYGFGAALGFSLVMVLFAAIRERLALADVPAPFRGAAIALITAGLMSLAF 184 (193)
T ss_pred HHHHHHHhhhHhhHHHHHHHHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHHH
Confidence 344455555555555554443332222 2234444444444444444433
No 123
>PF15345 TMEM51: Transmembrane protein 51
Probab=67.28 E-value=3.8 Score=33.45 Aligned_cols=23 Identities=9% Similarity=0.190 Sum_probs=16.6
Q ss_pred hHHHHHHHHHhhheecccCcccc
Q 024838 210 LGGLIVIIGLYSLLWGKEGDQHC 232 (262)
Q Consensus 210 ~G~~li~~g~~l~~~~~~~~~~~ 232 (262)
.|+++.++.+++-.+.|+|++..
T Consensus 67 ~Gv~LLLLSICL~IR~KRr~rq~ 89 (233)
T PF15345_consen 67 SGVALLLLSICLSIRDKRRRRQG 89 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 47788888888887777665543
No 124
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=65.93 E-value=2 Score=36.15 Aligned_cols=59 Identities=17% Similarity=0.301 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhhcCceeeeehhchHH----HHHHHHHHHHhccccchhhHhHHHHHHHHHhh
Q 024838 163 CLNLFIQLWCIEQRGPVFVTIFNPLTT----VIVAVAAYFLVGEKLHTGCILGGLIVIIGLYS 221 (262)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~s~~~~~~p----v~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l 221 (262)
+++.++|.+.+++.+++.-+++...-- ++-.++++++-..++|...=+=-.+.++++.+
T Consensus 119 aL~vW~Ym~lLr~~GAs~WtiLaFcLAF~LaivlLIIAv~L~qaWfT~L~dL~WL~LFlaiLI 181 (381)
T PF05297_consen 119 ALGVWFYMWLLRELGASFWTILAFCLAFLLAIVLLIIAVLLHQAWFTILVDLYWLLLFLAILI 181 (381)
T ss_dssp ---------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677788999999988777654332 22233344433344443332223344555433
No 125
>PRK11010 ampG muropeptide transporter; Validated
Probab=65.80 E-value=1.1e+02 Score=28.09 Aligned_cols=18 Identities=22% Similarity=0.222 Sum_probs=10.0
Q ss_pred hHhHHHHHHHHHhhheec
Q 024838 208 CILGGLIVIIGLYSLLWG 225 (262)
Q Consensus 208 ~~~G~~li~~g~~l~~~~ 225 (262)
..+..++.+.|+++..+.
T Consensus 385 f~~~~~~~l~~l~~~~~~ 402 (491)
T PRK11010 385 YLFSVAAAVPGLLLLLVC 402 (491)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445666666666555433
No 126
>PF15102 TMEM154: TMEM154 protein family
Probab=63.20 E-value=12 Score=28.39 Aligned_cols=21 Identities=10% Similarity=0.086 Sum_probs=11.5
Q ss_pred HHHHHHHHHhhheecccCccc
Q 024838 211 GGLIVIIGLYSLLWGKEGDQH 231 (262)
Q Consensus 211 G~~li~~g~~l~~~~~~~~~~ 231 (262)
++++++..++++.+.|+|+.|
T Consensus 68 LvlLLl~vV~lv~~~kRkr~K 88 (146)
T PF15102_consen 68 LVLLLLSVVCLVIYYKRKRTK 88 (146)
T ss_pred HHHHHHHHHHheeEEeecccC
Confidence 344455556666655555544
No 127
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=62.23 E-value=16 Score=30.98 Aligned_cols=135 Identities=11% Similarity=0.072 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCCh-hHHHHHHHHHHHHHHHHHHHHhccCcccccc-cchhhHHHHHHHhhhhhh
Q 024838 86 GSILTVASCILWSSFYIMQAFTLKKYPAK-LSISAWMNCIGAAQSAVYTIIVQPKAAAWST-TSGIDLWCIIYSGAVSSC 163 (262)
Q Consensus 86 G~~l~l~a~~~~a~~~v~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~gi~~~~ 163 (262)
++.+.+.+|++-. +..+.+.++.|+. .-+++.++++-+.-.++. ..+....+. .+-+.|..++.+-.
T Consensus 7 ai~~vf~GCcsnv---v~lE~L~~~~pgsgNLITFaqFlFia~eGlif----~skf~~~k~kiplk~Y~i~V~mFF---- 75 (330)
T KOG1583|consen 7 AISLVFGGCCSNV---VFLELLVRNEPGSGNLITFAQFLFIATEGLIF----TSKFFTVKPKIPLKDYAITVAMFF---- 75 (330)
T ss_pred HHHHHHHhhhchH---HHHHHHHHhCCCCeeehHHHHHHHHHHhceee----eccccccCCCCchhhhheehheee----
Confidence 4445555555433 2334445565533 334444444444333332 222222221 12234444333322
Q ss_pred HHHHHHHHHHh-hcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhheecccCccc
Q 024838 164 LNLFIQLWCIE-QRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGKEGDQH 231 (262)
Q Consensus 164 ~~~~~~~~~~~-~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~~~~ 231 (262)
..-.+.|++++ +++...--++-.-.++..++.++++.+.+.+..|+....++-.|+++.+..+.++.+
T Consensus 76 ~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~ 144 (330)
T KOG1583|consen 76 IVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGR 144 (330)
T ss_pred eeeeeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcchh
Confidence 22245666665 466677778888899999999999999999999999999999999998877765554
No 128
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=60.28 E-value=2.9 Score=35.25 Aligned_cols=10 Identities=20% Similarity=0.607 Sum_probs=0.0
Q ss_pred HHHHHHHHHH
Q 024838 85 KGSILTVASC 94 (262)
Q Consensus 85 ~G~~l~l~a~ 94 (262)
+|+++.++.+
T Consensus 107 ~Gi~~l~l~~ 116 (381)
T PF05297_consen 107 VGIVILFLCC 116 (381)
T ss_dssp ----------
T ss_pred HHHHHHHHHH
Confidence 4555444433
No 129
>PF03348 Serinc: Serine incorporator (Serinc); InterPro: IPR005016 This is a family of proteins which display differential expression in various tumour and cell lines. The function of these proteins is unknown. ; GO: 0016020 membrane
Probab=59.72 E-value=1.4e+02 Score=27.21 Aligned_cols=58 Identities=10% Similarity=-0.040 Sum_probs=34.0
Q ss_pred HhhhhhhHHHHHHHHHHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhheeccc
Q 024838 157 SGAVSSCLNLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGKE 227 (262)
Q Consensus 157 ~gi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~ 227 (262)
.+++..-..|.+| .|+...+...-+.. -.-.+..-+...++|.++.++.+.....+..
T Consensus 249 ssvv~~Y~~yL~~-SAlss~P~~~CNp~------------~~~~~~~~~~~~iig~i~~~~~v~yss~ra~ 306 (429)
T PF03348_consen 249 SSVVSLYTTYLTW-SALSSEPDKECNPS------------GSRSGSWNTWQSIIGLIFTFVSVLYSSFRAS 306 (429)
T ss_pred HHHHHHHHHHHHH-HHHHcCCCcccCCc------------ccccCCcchHHHHHHHHHHHHHHHHhccccc
Confidence 3444445566555 66666664444444 0112334566778999999988777665443
No 130
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=59.39 E-value=1.1e+02 Score=27.63 Aligned_cols=6 Identities=33% Similarity=0.805 Sum_probs=2.1
Q ss_pred HHHHHH
Q 024838 211 GGLIVI 216 (262)
Q Consensus 211 G~~li~ 216 (262)
+.+.++
T Consensus 407 ~~~~li 412 (455)
T TIGR00892 407 GSIVVS 412 (455)
T ss_pred hHHHHH
Confidence 333333
No 131
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=58.21 E-value=6.9 Score=28.67 Aligned_cols=27 Identities=19% Similarity=0.273 Sum_probs=15.5
Q ss_pred HHHhccccchhhH----hHHHHHHHHHhhhe
Q 024838 197 YFLVGEKLHTGCI----LGGLIVIIGLYSLL 223 (262)
Q Consensus 197 ~~~~~e~~~~~~~----~G~~li~~g~~l~~ 223 (262)
|++=.|..++|.+ +.++++++|+++.-
T Consensus 25 W~fR~ED~tpWNysiL~Ls~vvlvi~~~LLg 55 (125)
T PF15048_consen 25 WFFRVEDATPWNYSILALSFVVLVISFFLLG 55 (125)
T ss_pred HheecCCCCCcchHHHHHHHHHHHHHHHHHH
Confidence 4555667766665 34455556666643
No 132
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=55.96 E-value=1.6e+02 Score=26.81 Aligned_cols=28 Identities=11% Similarity=-0.026 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 024838 84 LKGSILTVASCILWSSFYIMQAFTLKKY 111 (262)
Q Consensus 84 ~~G~~l~l~a~~~~a~~~v~~~~~~~~~ 111 (262)
.++...+++++.+-++-..+.+..+|+.
T Consensus 350 ~F~~AYliAa~a~i~Li~~Y~~~vl~~~ 377 (430)
T PF06123_consen 350 GFNLAYLIAALACIGLISLYLSSVLKSW 377 (430)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4455555555555566666666656554
No 133
>PF09656 PGPGW: Putative transmembrane protein (PGPGW); InterPro: IPR019099 This entry represents proteins that contain three predicted transmembrane helices and an unusual motif with consensus sequence PGPGW.
Probab=54.51 E-value=49 Score=20.42 Aligned_cols=45 Identities=13% Similarity=0.348 Sum_probs=32.0
Q ss_pred hhhhHHHHhHHHHHHHHhcCCCCCCCCCCCcccCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024838 42 KILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVHENWLKGSILTVASCILWSSFYIMQAFTLKK 110 (262)
Q Consensus 42 ~~~g~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~v~~~~~~~~ 110 (262)
.+.|..+.++|++++.. +| .|.+..+++-...+.+.-..++..+.
T Consensus 5 ~v~G~~lv~~Gii~~~l-PG-----------------------pG~l~i~~GL~iLa~ef~wArr~l~~ 49 (53)
T PF09656_consen 5 GVLGWVLVVAGIIMLPL-PG-----------------------PGLLVIFLGLAILATEFPWARRLLRR 49 (53)
T ss_pred hhHHHHHHHHHHHhhcC-CC-----------------------CcHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 37889999999888765 33 35566677777777777777766554
No 134
>COG3247 HdeD Uncharacterized conserved protein [Function unknown]
Probab=53.63 E-value=1.1e+02 Score=24.28 Aligned_cols=42 Identities=14% Similarity=0.192 Sum_probs=29.1
Q ss_pred eeehhchHHHHHHHHHHHHhccccchh----hHhHHHHHHHHHhhh
Q 024838 181 VTIFNPLTTVIVAVAAYFLVGEKLHTG----CILGGLIVIIGLYSL 222 (262)
Q Consensus 181 ~s~~~~~~pv~a~~~~~~~~~e~~~~~----~~~G~~li~~g~~l~ 222 (262)
..-...+.=++++++++++.-++.... .++|.-+++.|..+.
T Consensus 130 G~~w~ii~Gvl~ii~g~ill~~P~~~~~~l~~llGI~li~~G~~~i 175 (185)
T COG3247 130 GWWWMIISGVLGIIAGLILLFNPVASAWILGLLLGIELIFQGIALI 175 (185)
T ss_pred CcHHHHHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHHHHHHHHHH
Confidence 445567777889999999888854322 246777788776554
No 135
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=53.18 E-value=7.6 Score=29.34 Aligned_cols=23 Identities=4% Similarity=-0.012 Sum_probs=15.3
Q ss_pred CceeeeehhchHHHHHHHHHHHH
Q 024838 177 GPVFVTIFNPLTTVIVAVAAYFL 199 (262)
Q Consensus 177 ~~~~~s~~~~~~pv~a~~~~~~~ 199 (262)
+....+.+.|+.|.++++++.++
T Consensus 73 slL~sA~LvYi~PL~~l~v~~~L 95 (150)
T COG3086 73 SLLKSALLVYIFPLVGLFLGAIL 95 (150)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777887777776654
No 136
>PF15471 TMEM171: Transmembrane protein family 171
Probab=52.54 E-value=19 Score=30.20 Aligned_cols=18 Identities=39% Similarity=0.647 Sum_probs=14.2
Q ss_pred hhhHhHHHHHHHHHhhhe
Q 024838 206 TGCILGGLIVIIGLYSLL 223 (262)
Q Consensus 206 ~~~~~G~~li~~g~~l~~ 223 (262)
..|++|-++++.|+....
T Consensus 161 slQImGPlIVl~GLCFFV 178 (319)
T PF15471_consen 161 SLQIMGPLIVLVGLCFFV 178 (319)
T ss_pred ehhhhhhHHHHHhhhhhh
Confidence 367899999999976644
No 137
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=51.98 E-value=1.7e+02 Score=25.77 Aligned_cols=16 Identities=25% Similarity=0.250 Sum_probs=9.8
Q ss_pred hhHhHHHHHHHHHhhh
Q 024838 207 GCILGGLIVIIGLYSL 222 (262)
Q Consensus 207 ~~~~G~~li~~g~~l~ 222 (262)
...+++++.+.++++.
T Consensus 371 ~f~~~~~~~~~~~~~~ 386 (402)
T PRK11902 371 FYLMTVVIALPGLALL 386 (402)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3456666666666665
No 138
>COG3965 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=51.64 E-value=1.5e+02 Score=25.09 Aligned_cols=94 Identities=11% Similarity=0.135 Sum_probs=49.2
Q ss_pred HHHhhhchHHHHHHHHHHHhhhcccccCCCcchhhhhHHHHhHHHHHHHH--h---c--CCCCCCCCCCCcccCCCcccc
Q 024838 9 MTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAF--Y---K--GPAVPSLKGAPIHLGTNSVHE 81 (262)
Q Consensus 9 a~~i~~~~pi~~~ll~~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~~l~~--~---~--~~~~~~~~~~~~~~~~~~~~~ 81 (262)
.+++.....++....++++-+..-..|.+++++.+=.+++++=|.++... + . +... ++ +-+-
T Consensus 54 YSl~da~mtllsL~vsrli~~~p~~~RF~~GfwhlEplvL~ing~ll~ll~lyAlinAl~~l~---------dG--GR~v 122 (314)
T COG3965 54 YSLIDAGMTLLSLLVSRLIAKDPRDARFPYGFWHLEPLVLAINGTLLALLCLYALINALGSLL---------DG--GREV 122 (314)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCccccCcchhhhhhhHhhhccHHHHHHHHHHHHHHHHHHh---------cC--Cccc
Confidence 45555666677777777776633333556666666666666666433321 1 0 0000 00 0112
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCC
Q 024838 82 NWLKGSILTVASCILWSSFYIMQAFTLKKYPA 113 (262)
Q Consensus 82 ~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~~ 113 (262)
....++...+.+....+.-....|+..|+.++
T Consensus 123 ~~~~ai~yt~~s~~~Ca~~~~~~~r~nrr~~s 154 (314)
T COG3965 123 EPGHAIAYTLVSVTGCAAIAWKLRRLNRRLKS 154 (314)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHhhhccCCC
Confidence 23356666666666666666666666666543
No 139
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=50.44 E-value=1.8e+02 Score=25.79 Aligned_cols=16 Identities=13% Similarity=-0.089 Sum_probs=10.6
Q ss_pred HHhhhcccccCCCcch
Q 024838 26 VFRLEIVDVRSPRGIA 41 (262)
Q Consensus 26 ~~~~E~~~~~~~~~~~ 41 (262)
-++|+|++.-||....
T Consensus 20 ~~Lr~ki~~lqk~~IP 35 (368)
T PF03616_consen 20 KFLRAKIPFLQKLFIP 35 (368)
T ss_pred HHHHHHhHHHHHccCC
Confidence 4567787777765544
No 140
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=50.09 E-value=1.6e+02 Score=24.99 Aligned_cols=18 Identities=6% Similarity=-0.012 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHhhhhc
Q 024838 94 CILWSSFYIMQAFTLKKY 111 (262)
Q Consensus 94 ~~~~a~~~v~~~~~~~~~ 111 (262)
.+.+........++.++.
T Consensus 40 ~~~~~~~~~~~g~l~dr~ 57 (379)
T TIGR00881 40 SIAYGISKFVMGSVSDRS 57 (379)
T ss_pred HHHHHhhhhhhhHHHHhh
Confidence 334444444444555555
No 141
>PF10754 DUF2569: Protein of unknown function (DUF2569); InterPro: IPR019690 This entry represents a protein that is conserved in bacteria. The function is not known, but several members are annotated as being YdgK or a homologue thereof and associated to the inner membrane. This signature also matches proteins that are described as transglutaminase-like enzymes, although this could not be confirmed.
Probab=50.03 E-value=1.1e+02 Score=23.17 Aligned_cols=27 Identities=4% Similarity=0.311 Sum_probs=21.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024838 83 WLKGSILTVASCILWSSFYIMQAFTLK 109 (262)
Q Consensus 83 ~~~G~~l~l~a~~~~a~~~v~~~~~~~ 109 (262)
.....+..++++..|.-|-...||..+
T Consensus 119 ~i~~l~~~li~a~IwipYf~~S~RVK~ 145 (149)
T PF10754_consen 119 AIRELLRSLIAAAIWIPYFLRSKRVKN 145 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhh
Confidence 346788899999999999999887544
No 142
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=49.60 E-value=1.6e+02 Score=24.77 Aligned_cols=29 Identities=21% Similarity=0.370 Sum_probs=19.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024838 82 NWLKGSILTVASCILWSSFYIMQAFTLKK 110 (262)
Q Consensus 82 ~~~~G~~l~l~a~~~~a~~~v~~~~~~~~ 110 (262)
+...|..+++++.++|+...+=..+..++
T Consensus 180 ~RivG~~LAv~aGvlyGs~fvPv~Yi~~~ 208 (254)
T PF07857_consen 180 KRIVGIILAVFAGVLYGSNFVPVIYIQDH 208 (254)
T ss_pred chhHhHHHHHHHHHHHhcccchHHHHHhC
Confidence 35578888888888888766655554444
No 143
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=49.29 E-value=11 Score=26.89 Aligned_cols=30 Identities=17% Similarity=0.043 Sum_probs=22.4
Q ss_pred HHHHHHHHhhhcccccCCCcchhhhhHHHHhHHHHH
Q 024838 20 TFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMV 55 (262)
Q Consensus 20 ~~ll~~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~~ 55 (262)
-+.++.+++||++++.. +.|..+.+.++..
T Consensus 76 F~~Fsv~~l~E~l~~n~------l~af~~i~~av~f 105 (108)
T PF04342_consen 76 FAPFSVFYLGEPLKWNY------LWAFLCILGAVYF 105 (108)
T ss_pred eHHHHHHHhCCCccHHH------HHHHHHHHHhhhe
Confidence 34567789999999988 8887777666543
No 144
>PF10225 DUF2215: Uncharacterized conserved protein (DUF2215); InterPro: IPR024233 This entry represents a domain that is found in a number of different proteins, including a family of transmembrane proteins.
Probab=48.82 E-value=1.6e+02 Score=24.61 Aligned_cols=37 Identities=11% Similarity=0.008 Sum_probs=19.0
Q ss_pred HHHhhcCceeeeehhchHHHHHHHHHHHHhccccchh
Q 024838 171 WCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTG 207 (262)
Q Consensus 171 ~~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~ 207 (262)
.+-++.++......+.++=..=++-..+++.-.....
T Consensus 114 vcy~~gp~~~~rs~~~v~W~Lqligl~lI~~ss~~~~ 150 (249)
T PF10225_consen 114 VCYRYGPPVDPRSRNFVKWALQLIGLVLIYFSSQDPE 150 (249)
T ss_pred hhcccCCCccHhHHHHHHHHHHHHHHHHHHHHcCcHH
Confidence 3444666666555555555554554455544444333
No 145
>PRK15049 L-asparagine permease; Provisional
Probab=48.30 E-value=2.3e+02 Score=26.24 Aligned_cols=9 Identities=22% Similarity=0.065 Sum_probs=4.7
Q ss_pred hhhcccccC
Q 024838 28 RLEIVDVRS 36 (262)
Q Consensus 28 ~~E~~~~~~ 36 (262)
-.|--++++
T Consensus 243 aeE~knP~r 251 (499)
T PRK15049 243 AGECKDPQT 251 (499)
T ss_pred HHHhcChhh
Confidence 455555554
No 146
>PRK11715 inner membrane protein; Provisional
Probab=48.13 E-value=2.2e+02 Score=26.03 Aligned_cols=28 Identities=7% Similarity=-0.129 Sum_probs=15.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 024838 84 LKGSILTVASCILWSSFYIMQAFTLKKY 111 (262)
Q Consensus 84 ~~G~~l~l~a~~~~a~~~v~~~~~~~~~ 111 (262)
.++...+++|+.+-..-..+....++..
T Consensus 356 gF~~AYliAa~a~v~li~~Y~~~vl~~~ 383 (436)
T PRK11715 356 GFTLAYLIAALACVLLIGFYLSAVLRSW 383 (436)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3445555555555555555555555554
No 147
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=47.68 E-value=1.2e+02 Score=28.28 Aligned_cols=72 Identities=13% Similarity=0.176 Sum_probs=37.8
Q ss_pred CCCcchhhhhHHHHhHHHHHHHHhcCCCCCCCCCCCcccCCCcccchhhHHHHHHHHHHHHHHHHHHH---HHHhhhhcC
Q 024838 36 SPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVHENWLKGSILTVASCILWSSFYIM---QAFTLKKYP 112 (262)
Q Consensus 36 ~~~~~~~~~g~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~v~---~~~~~~~~~ 112 (262)
+|+.+.|+--.++.+.+......+..+.. ..+..... -.++....|+.+..+..+.++.|.+. ...+.++.|
T Consensus 35 ~~~l~~K~dl~i~~~~~~~y~~~~~d~~s--i~~a~l~g---~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ 109 (495)
T KOG2533|consen 35 ERKLLRKLDLFILPFLCYLYFHAYLDKSS--IVNASLSG---LKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFP 109 (495)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcchhc--chhHHHcC---CccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCC
Confidence 34455567777778887655543322111 11110000 12233345677777777777777666 356667773
No 148
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=46.35 E-value=2.2e+02 Score=25.61 Aligned_cols=79 Identities=8% Similarity=0.084 Sum_probs=34.7
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhcC-ceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhheecccCc
Q 024838 151 LWCIIYSGAVSSCLNLFIQLWCIEQRG-PVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGKEGD 229 (262)
Q Consensus 151 ~~~~~~~gi~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~~ 229 (262)
+..+.-++.+...+.|.+...+.-+.. +..-......-+.++.++..+.+.. ..+..++..+.+.++....|.+++.
T Consensus 351 ~~~l~~~~~~~~l~~y~~~~~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (435)
T PRK10435 351 FGELTGIAVLLTMLPYFYSCVDLIRFEGVNIRNFVSLICSVLGCVFCFIALMG--ASSFELAGTFIVSLIILMFYARKMH 428 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333444444444555555544432222 1111112234455555555555442 2334455555555555555555444
Q ss_pred cc
Q 024838 230 QH 231 (262)
Q Consensus 230 ~~ 231 (262)
++
T Consensus 429 ~~ 430 (435)
T PRK10435 429 ER 430 (435)
T ss_pred ch
Confidence 44
No 149
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=46.16 E-value=22 Score=20.58 Aligned_cols=18 Identities=22% Similarity=0.862 Sum_probs=11.4
Q ss_pred hHHHHHHHHHhhheeccc
Q 024838 210 LGGLIVIIGLYSLLWGKE 227 (262)
Q Consensus 210 ~G~~li~~g~~l~~~~~~ 227 (262)
+|..+++++++++.|+++
T Consensus 21 V~vI~~vl~~~l~~~~rR 38 (40)
T PF08693_consen 21 VGVIIIVLGAFLFFWYRR 38 (40)
T ss_pred hHHHHHHHHHHhheEEec
Confidence 355666777777765544
No 150
>PRK02237 hypothetical protein; Provisional
Probab=45.17 E-value=26 Score=25.09 Aligned_cols=36 Identities=22% Similarity=0.217 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhhhcccccCCCcchhhhhHHHHhHHHHHHHH
Q 024838 17 PCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAF 58 (262)
Q Consensus 17 pi~~~ll~~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~~l~~ 58 (262)
.+...+-.|.+-++|++... ++|..+.++|+.++.+
T Consensus 70 I~~Sl~W~w~vdg~~Pd~~D------~iGa~v~L~G~~iI~~ 105 (109)
T PRK02237 70 VAGSLLWLWVVDGVRPDRWD------WIGAAICLVGMAVIMY 105 (109)
T ss_pred HHHHHHHHHHhcCcCCChhH------HHhHHHHHHhHHHhee
Confidence 34445666777766666666 9999999999988864
No 151
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=44.86 E-value=2.1e+02 Score=24.91 Aligned_cols=32 Identities=13% Similarity=0.018 Sum_probs=14.6
Q ss_pred HHHHHHHHhccccchhhHhHHHHHHHHHhhhe
Q 024838 192 VAVAAYFLVGEKLHTGCILGGLIVIIGLYSLL 223 (262)
Q Consensus 192 a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~ 223 (262)
..+.+++.-.-......++++++.++++.+..
T Consensus 355 ~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 386 (399)
T PRK05122 355 GPLAGLVASWFGYPSIFLAAALAALLGLALTW 386 (399)
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH
Confidence 34445443322233344455555555655544
No 152
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=44.66 E-value=32 Score=18.52 Aligned_cols=19 Identities=26% Similarity=0.184 Sum_probs=9.7
Q ss_pred chhhHhHHHHHHHHHhhhe
Q 024838 205 HTGCILGGLIVIIGLYSLL 223 (262)
Q Consensus 205 ~~~~~~G~~li~~g~~l~~ 223 (262)
....++|.+++..+.++..
T Consensus 11 ~~~~~~G~~l~~~~~~~~~ 29 (34)
T TIGR01167 11 SLLLLLGLLLLGLGGLLLR 29 (34)
T ss_pred HHHHHHHHHHHHHHHHHhe
Confidence 4455667744444444433
No 153
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=44.66 E-value=2.6e+02 Score=25.91 Aligned_cols=20 Identities=20% Similarity=0.017 Sum_probs=10.1
Q ss_pred HhhhcccccCCCcchhhhhH
Q 024838 27 FRLEIVDVRSPRGIAKILGT 46 (262)
Q Consensus 27 ~~~E~~~~~~~~~~~~~~g~ 46 (262)
.-+|--++++..+|.-+.++
T Consensus 216 ~a~E~knP~r~~PrAi~~~~ 235 (507)
T TIGR00910 216 HINELENPGRDYPLAMILLM 235 (507)
T ss_pred HHHHccCCcccccHHHHHHH
Confidence 34555555555555544443
No 154
>PRK11715 inner membrane protein; Provisional
Probab=43.87 E-value=2.6e+02 Score=25.60 Aligned_cols=49 Identities=2% Similarity=-0.050 Sum_probs=32.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHH
Q 024838 82 NWLKGSILTVASCILWSSFYIMQAFTLKKYPAKLSISAWMNCIGAAQSAVYTI 134 (262)
Q Consensus 82 ~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 134 (262)
....|+++..+.-.++-+.-++.|+ +. +|+.....-+..+..-++.+.+
T Consensus 303 A~KYgiLFI~LTF~~fFlfE~~~~~---~i-HpiQYlLVGlAl~lFYLLLLSl 351 (436)
T PRK11715 303 AVKYAILFIALTFAAFFLFELLKKL---RI-HPVQYLLVGLALVLFYLLLLSL 351 (436)
T ss_pred HHhHHHHHHHHHHHHHHHHHHhcCc---ee-cHHHHHHHHHHHHHHHHHHHHH
Confidence 3446777777777666666666432 34 8888777777666666666665
No 155
>TIGR00836 amt ammonium transporter. The mechanism of energy coupling, if any, to methyl-NH2 or NH3 uptake by the AmtB protein of E. coli is not entirely clear. NH4+ uniport driven by the pmf, energy independent NH3 facilitation, and NH4+/K+ antiport have been proposed as possible transport mechanisms. In Corynebacterium glutamicum and Arabidopsis thaliana, uptake via the Amt1 homologues of AmtB has been reported to be driven by the pmf.
Probab=43.14 E-value=2.5e+02 Score=25.31 Aligned_cols=50 Identities=14% Similarity=0.157 Sum_probs=25.0
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHhh---cCceeeeehhchHHHHHHHHHHHHhc
Q 024838 152 WCIIYSGAVSSCLNLFIQLWCIEQ---RGPVFVTIFNPLTTVIVAVAAYFLVG 201 (262)
Q Consensus 152 ~~~~~~gi~~~~~~~~~~~~~~~~---~~~~~~s~~~~~~pv~a~~~~~~~~~ 201 (262)
+..+..|++++.+++....+..++ -++..+-.+-.+-=+++.+..-++-.
T Consensus 280 ~~A~viG~iag~~~~~~~~~l~~~~~iDD~~~~~~vHg~~Gi~G~i~~glfa~ 332 (403)
T TIGR00836 280 WGAIIIGLVAGVLCYLAVSKLKKKLKIDDPLDAFAVHGVGGIWGLIATGLFAA 332 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccchhhhhhHHHHHHHHHHhcc
Confidence 333445666666666555433333 34544444444444555555555443
No 156
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=42.66 E-value=60 Score=24.63 Aligned_cols=24 Identities=8% Similarity=0.177 Sum_probs=19.8
Q ss_pred chhHHHHhhhchHHHHHHHHHHHh
Q 024838 5 HPTFMTAVVNTIPCMTFIIAVVFR 28 (262)
Q Consensus 5 s~~~a~~i~~~~pi~~~ll~~~~~ 28 (262)
|.-.++++.++.|+++++++.++.
T Consensus 73 slL~sA~LvYi~PL~~l~v~~~La 96 (150)
T COG3086 73 SLLKSALLVYIFPLVGLFLGAILA 96 (150)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556788999999999999888763
No 157
>TIGR03644 marine_trans_1 probable ammonium transporter, marine subtype. Members of this protein family are well conserved subclass of putative ammonimum transporters, belonging to the much broader set of ammonium/methylammonium transporter described by TIGR00836. Species with this transporter tend to be marine bacteria. Partial phylogenetic profiling (PPP) picks a member of this protein family as the single best-scoring protein vs. a reference profile for the marine environment Genome Property for a large number of different query genomes. This finding by PPP suggests that this transporter family represents an important adaptation to the marine environment.
Probab=42.55 E-value=2.6e+02 Score=25.27 Aligned_cols=63 Identities=13% Similarity=0.182 Sum_probs=35.2
Q ss_pred HHHhhhhhhHHHHHHHH--HHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHH
Q 024838 155 IYSGAVSSCLNLFIQLW--CIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVII 217 (262)
Q Consensus 155 ~~~gi~~~~~~~~~~~~--~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~ 217 (262)
+..|++++.+++..... -.|.-++..+-.+-..-=+++.+..-++-++..-..|++|.+.++.
T Consensus 297 ~iiG~iag~v~~~~~~~~~~~~iDD~~~~~~vHg~~Gi~G~i~~glf~~~~~l~~Ql~g~~~~~~ 361 (404)
T TIGR03644 297 TLIGAVGGVIVVFSIVLLDKLKIDDPVGAISVHGVAGIWGTLVVPITNGDASFGAQLIGAATIFA 361 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCcCchHhhhHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 34455555555544421 1233445555555555556777776666555555578888766553
No 158
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=42.46 E-value=1.4e+02 Score=28.14 Aligned_cols=44 Identities=9% Similarity=0.119 Sum_probs=26.3
Q ss_pred hchHHHHHHHHHHHhh-hcccccCCCcchhhhhHHHHhHHHHHHH
Q 024838 14 NTIPCMTFIIAVVFRL-EIVDVRSPRGIAKILGTLASLVGVMVIA 57 (262)
Q Consensus 14 ~~~pi~~~ll~~~~~~-E~~~~~~~~~~~~~~g~~l~~~Gv~~l~ 57 (262)
+.-|+..++.+.++.+ ||.+.++.-......+.++++++.++..
T Consensus 185 CVLPmlpl~s~~v~g~~~~~s~~ra~~Ls~~yv~~mALay~~lgl 229 (569)
T COG4232 185 CVLPMLPLLSGIVLGSAKRASKARAFGLSFVYVQGMALAYTLLGL 229 (569)
T ss_pred HhhhhHHHHHHHHhccccccchhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3456666666777776 3566666555555666666666654443
No 159
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=41.05 E-value=1.2e+02 Score=21.09 Aligned_cols=56 Identities=18% Similarity=0.074 Sum_probs=33.9
Q ss_pred HHHHHhhcCceeeeehhchHHHHHHHHHHH---Hhccc-cchhhHhHHHHHHHHHhhhee
Q 024838 169 QLWCIEQRGPVFVTIFNPLTTVIVAVAAYF---LVGEK-LHTGCILGGLIVIIGLYSLLW 224 (262)
Q Consensus 169 ~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~---~~~e~-~~~~~~~G~~li~~g~~l~~~ 224 (262)
...++++++....-.+-.++.+.+++++.+ +-++. +-...|.|...-+.+.-+...
T Consensus 21 lVq~IkkT~~v~~K~iPlIs~viGilLG~~~~~~~~~~~l~~~~~aG~laGlAaTGL~e~ 80 (93)
T PF06946_consen 21 LVQAIKKTKVVPNKWIPLISVVIGILLGAAAYPLTGDGNLALMAWAGGLAGLAATGLFEQ 80 (93)
T ss_pred HHHHHHHhccCCcchhhHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHhhhhhhhHHHH
Confidence 357778876656666666666666666554 23322 333457788777777666543
No 160
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=40.69 E-value=40 Score=20.55 Aligned_cols=14 Identities=21% Similarity=0.102 Sum_probs=6.0
Q ss_pred HHHHHHhhheeccc
Q 024838 214 IVIIGLYSLLWGKE 227 (262)
Q Consensus 214 li~~g~~l~~~~~~ 227 (262)
+.++|+.+....|+
T Consensus 13 ~~lLg~~I~~~~K~ 26 (50)
T PF12606_consen 13 MGLLGLSICTTLKA 26 (50)
T ss_pred HHHHHHHHHHHhhc
Confidence 33444444443343
No 161
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=40.16 E-value=25 Score=25.12 Aligned_cols=38 Identities=21% Similarity=0.253 Sum_probs=27.7
Q ss_pred chHHHHHHHHHHHhhhcccccCCCcchhhhhHHHHhHHHHHHHH
Q 024838 15 TIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAF 58 (262)
Q Consensus 15 ~~pi~~~ll~~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~~l~~ 58 (262)
...+...+-.|.+-++|++... ++|..+.++|+.++.+
T Consensus 66 vfI~~Sl~W~w~vdg~~Pd~~D------~iGa~i~L~G~~iI~~ 103 (107)
T PF02694_consen 66 VFIVASLLWGWLVDGVRPDRWD------WIGAAICLVGVAIILF 103 (107)
T ss_pred hHHHHHHHHHhhhcCcCCChHH------HHhHHHHHHhHHheEe
Confidence 3345556666777766666665 9999999999988864
No 162
>MTH00057 ND6 NADH dehydrogenase subunit 6; Provisional
Probab=39.01 E-value=2e+02 Score=22.85 Aligned_cols=34 Identities=15% Similarity=0.086 Sum_probs=23.2
Q ss_pred HHHHHHHhccccchhhHhHHHHHH--HHHhhheecc
Q 024838 193 AVAAYFLVGEKLHTGCILGGLIVI--IGLYSLLWGK 226 (262)
Q Consensus 193 ~~~~~~~~~e~~~~~~~~G~~li~--~g~~l~~~~~ 226 (262)
-.+|..++.|..-+....|..+.+ .|.+...+++
T Consensus 132 ~~iG~~Lyt~Y~l~fe~~s~lLLvAmIGAIvLa~~~ 167 (186)
T MTH00057 132 EVLGRVLYTDYYYLFILASFILLVAMIGAIVLTHDL 167 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 455788888888888888886654 5555555443
No 163
>PF04550 Phage_holin_2: Phage holin family 2 ; InterPro: IPR007633 This entry represents the Bacteriophage P2, GpY, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=38.89 E-value=1e+02 Score=21.21 Aligned_cols=63 Identities=14% Similarity=0.204 Sum_probs=35.4
Q ss_pred HHHhhhcccccCCCcchhhhhHHHHhHHHHHHHHhcCCCCCCCCCCCcccCCCcccchhhHHHHHHHHHHHHHHHHHHHH
Q 024838 25 VVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVHENWLKGSILTVASCILWSSFYIMQ 104 (262)
Q Consensus 25 ~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~v~~ 104 (262)
.+--+|++|+|.-.+|.-+-+..-..+|++++-+ .+ . ..-.+..+.+++..+.|..+-
T Consensus 23 ~L~s~Epit~RL~iGR~ilGs~~S~~Aga~Li~~--Pd-l-------------------~plAv~GlgsalGI~G~q~vE 80 (89)
T PF04550_consen 23 VLASNEPITLRLFIGRVILGSAVSVVAGAALIQF--PD-L-------------------PPLAVIGLGSALGIAGYQAVE 80 (89)
T ss_pred HHccCCCCchhHHhHHHHHhhHHHHHHHHHHhcC--CC-C-------------------CHHHHHHHHHHHHhhhHHHHH
Confidence 3557889998875555544445545555555532 11 1 133456666777766666665
Q ss_pred HHhhh
Q 024838 105 AFTLK 109 (262)
Q Consensus 105 ~~~~~ 109 (262)
..+.|
T Consensus 81 ~~lrr 85 (89)
T PF04550_consen 81 AWLRR 85 (89)
T ss_pred HHHHH
Confidence 44333
No 164
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=38.02 E-value=3.7e+02 Score=25.75 Aligned_cols=17 Identities=12% Similarity=0.387 Sum_probs=14.1
Q ss_pred hhhhHHHHhHHHHHHHH
Q 024838 42 KILGTLASLVGVMVIAF 58 (262)
Q Consensus 42 ~~~g~~l~~~Gv~~l~~ 58 (262)
=++|.++.+.|..+++.
T Consensus 240 D~IG~~L~~~Gl~LfLl 256 (599)
T PF06609_consen 240 DWIGIFLFIAGLALFLL 256 (599)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 36899999999877765
No 165
>PF14851 FAM176: FAM176 family
Probab=37.78 E-value=68 Score=24.63 Aligned_cols=7 Identities=29% Similarity=0.510 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 024838 211 GGLIVII 217 (262)
Q Consensus 211 G~~li~~ 217 (262)
|.++.++
T Consensus 33 GLlLtLc 39 (153)
T PF14851_consen 33 GLLLTLC 39 (153)
T ss_pred HHHHHHH
Confidence 3333333
No 166
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=36.35 E-value=77 Score=24.29 Aligned_cols=24 Identities=8% Similarity=0.079 Sum_probs=17.9
Q ss_pred chhHHHHhhhchHHHHHHHHHHHh
Q 024838 5 HPTFMTAVVNTIPCMTFIIAVVFR 28 (262)
Q Consensus 5 s~~~a~~i~~~~pi~~~ll~~~~~ 28 (262)
+.-.++++.|+.|++.++++..+.
T Consensus 73 ~llkaa~lvYllPLl~li~ga~l~ 96 (154)
T PRK10862 73 SLLRSALLVYMTPLVGLFLGAALF 96 (154)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345578888999999888776553
No 167
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=36.30 E-value=21 Score=26.54 Aligned_cols=20 Identities=15% Similarity=0.157 Sum_probs=13.1
Q ss_pred eeeehhchHHHHHHHHHHHH
Q 024838 180 FVTIFNPLTTVIVAVAAYFL 199 (262)
Q Consensus 180 ~~s~~~~~~pv~a~~~~~~~ 199 (262)
+++.+.|+-|+++++++.++
T Consensus 69 ~aa~l~Y~lPll~li~g~~l 88 (135)
T PF04246_consen 69 KAAFLVYLLPLLALIAGAVL 88 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777777653
No 168
>PF11118 DUF2627: Protein of unknown function (DUF2627); InterPro: IPR020138 This entry represents uncharacterised membrane proteins with no known function.
Probab=36.28 E-value=61 Score=21.62 Aligned_cols=24 Identities=21% Similarity=0.297 Sum_probs=13.8
Q ss_pred HhHHHHHHHHHhh----heecccCcccc
Q 024838 209 ILGGLIVIIGLYS----LLWGKEGDQHC 232 (262)
Q Consensus 209 ~~G~~li~~g~~l----~~~~~~~~~~~ 232 (262)
..|..+...|+.. ..++.+|+++.
T Consensus 44 l~G~~lf~~G~~Fi~GfI~~RDRKrnkV 71 (77)
T PF11118_consen 44 LAGLLLFAIGVGFIAGFILHRDRKRNKV 71 (77)
T ss_pred HHHHHHHHHHHHHHHhHhheeecccccc
Confidence 4566776677555 33555555553
No 169
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=35.35 E-value=3.5e+02 Score=24.65 Aligned_cols=21 Identities=14% Similarity=0.308 Sum_probs=16.1
Q ss_pred hhHhHHHHHHHHHhhheeccc
Q 024838 207 GCILGGLIVIIGLYSLLWGKE 227 (262)
Q Consensus 207 ~~~~G~~li~~g~~l~~~~~~ 227 (262)
..++|..+++.|+.++.+.++
T Consensus 412 ~~~~~~~~~~~g~~~y~~~~~ 432 (468)
T TIGR03810 412 YLLLSAILYAPGIYFYARARK 432 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 567888999999888865443
No 170
>TIGR01998 PTS-II-BC-nag PTS system, N-acetylglucosamine-specific IIBC component. This model represents the combined B and C domains of the PTS transport system enzyme II specific for N-acetylglucosamine transport. Many of the genes in this family also include an A domain as part of the same polypeptide and thus should be given the name "PTS system, N-acetylglucosamine-specific IIABC component". This family is most closely related to the glucose-specific PTS enzymes.
Probab=34.92 E-value=1.7e+02 Score=27.01 Aligned_cols=30 Identities=13% Similarity=0.097 Sum_probs=24.7
Q ss_pred hhHHHHHHHhhhhhhHHHHHHHHHHhhcCc
Q 024838 149 IDLWCIIYSGAVSSCLNLFIQLWCIEQRGP 178 (262)
Q Consensus 149 ~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~ 178 (262)
..|++++..|++...+-|..+.+.+++.+.
T Consensus 348 ~~~~~~~~iG~~~~~iyy~~F~~~I~k~~l 377 (476)
T TIGR01998 348 NQPLMLLVQGLVFFALYYVVFRFAIRRFNL 377 (476)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 467888888988888888889999998764
No 171
>PRK10489 enterobactin exporter EntS; Provisional
Probab=34.64 E-value=3.2e+02 Score=24.03 Aligned_cols=17 Identities=35% Similarity=0.364 Sum_probs=9.2
Q ss_pred hHhHHHHHHHHHhhhee
Q 024838 208 CILGGLIVIIGLYSLLW 224 (262)
Q Consensus 208 ~~~G~~li~~g~~l~~~ 224 (262)
.+.|++..+.++++...
T Consensus 382 ~~~~~~~~~~~~~~~~~ 398 (417)
T PRK10489 382 SASGFGLLIIGVLLLLV 398 (417)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34555555666555443
No 172
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=34.56 E-value=3.6e+02 Score=24.59 Aligned_cols=44 Identities=16% Similarity=0.129 Sum_probs=24.2
Q ss_pred hhchHHHHHHHHHHH-HhccccchhhHhHHHHHHHHHhhheecccC
Q 024838 184 FNPLTTVIVAVAAYF-LVGEKLHTGCILGGLIVIIGLYSLLWGKEG 228 (262)
Q Consensus 184 ~~~~~pv~a~~~~~~-~~~e~~~~~~~~G~~li~~g~~l~~~~~~~ 228 (262)
....-++++.++..+ .+... ......|.+++..|+.++.+.+++
T Consensus 394 ~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~y~~~~~~ 438 (473)
T TIGR00905 394 KALIVGVIACVYSIWLLYAAG-LKYLLLGFILYAPGIIFYGRARKE 438 (473)
T ss_pred hHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334445555544443 33332 234567888888998776654443
No 173
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=34.54 E-value=3.8e+02 Score=24.81 Aligned_cols=115 Identities=6% Similarity=0.027 Sum_probs=59.0
Q ss_pred chhHHHHhhhchHHHHHH----HHHHHhhhcccccCCCcchhhhhHHHHhHHHHHHHHhcCCCCCCCCCCCcccCCCccc
Q 024838 5 HPTFMTAVVNTIPCMTFI----IAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVH 80 (262)
Q Consensus 5 s~~~a~~i~~~~pi~~~l----l~~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~~~ 80 (262)
|++.++.+....=++-++ ++++.-|-|-++.|++++.-+.++..+++.++.... .+.. ..
T Consensus 46 s~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~--p~~~--------------~~ 109 (467)
T COG2211 46 SAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFIT--PDFS--------------MT 109 (467)
T ss_pred cHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcC--CCcc--------------cC
Confidence 455555555544444443 334445666556666666666667777777666542 2211 12
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHH----hhhhcCChhHHHHHHHHHHHHHHHHHHHH
Q 024838 81 ENWLKGSILTVASCILWSSFYIMQAF----TLKKYPAKLSISAWMNCIGAAQSAVYTII 135 (262)
Q Consensus 81 ~~~~~G~~l~l~a~~~~a~~~v~~~~----~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 135 (262)
.......+.-++-.++|..-++=..- ..++......+..+++..+.+..++...+
T Consensus 110 ~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~ 168 (467)
T COG2211 110 GKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVL 168 (467)
T ss_pred cchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22334444444444555544433222 22232245677888888777665554443
No 174
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=33.92 E-value=2.8e+02 Score=23.13 Aligned_cols=47 Identities=19% Similarity=0.217 Sum_probs=24.1
Q ss_pred CceeeeehhchHHHHHHHHHHHHhccccc-----hhhHhHHHHHHHHHhhhe
Q 024838 177 GPVFVTIFNPLTTVIVAVAAYFLVGEKLH-----TGCILGGLIVIIGLYSLL 223 (262)
Q Consensus 177 ~~~~~s~~~~~~pv~a~~~~~~~~~e~~~-----~~~~~G~~li~~g~~l~~ 223 (262)
..+..-.+...--.+.....|.++|-.++ .-..+|+.+-+.-..++.
T Consensus 154 kSvE~mPf~Ls~a~fl~a~~W~lYGlli~D~~IaipN~iG~~l~~~QL~Ly~ 205 (243)
T KOG1623|consen 154 KSVEYMPFPLSFALFLVAVQWLLYGLLIKDFFIAIPNVLGFLLGLIQLILYF 205 (243)
T ss_pred CceeeechHHHHHHHHHHHHHHHHHHHhcCeEEEcccHHHHHHHHHHHHHhh
Confidence 44444444443333444444544443332 233467777777777773
No 175
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=33.85 E-value=3.6e+02 Score=24.32 Aligned_cols=38 Identities=16% Similarity=0.216 Sum_probs=23.8
Q ss_pred HHHHHHHHhccccchhhHhHHHHHHHHHhhheecccCc
Q 024838 192 VAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGKEGD 229 (262)
Q Consensus 192 a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~~ 229 (262)
+.+-+.++-+--+...-+.|..+.+.+..+.....+++
T Consensus 352 A~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~~~~ 389 (394)
T COG2814 352 AALGGLVLDALGYAATGWVGAALLLLALLLALLSARKD 389 (394)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33444444444456666789999999988876544433
No 176
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=33.49 E-value=18 Score=21.23 Aligned_cols=15 Identities=13% Similarity=0.408 Sum_probs=6.5
Q ss_pred hhhHhHHHHHHHHHh
Q 024838 206 TGCILGGLIVIIGLY 220 (262)
Q Consensus 206 ~~~~~G~~li~~g~~ 220 (262)
|..++=.+++++|++
T Consensus 4 wlt~iFsvvIil~If 18 (49)
T PF11044_consen 4 WLTTIFSVVIILGIF 18 (49)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444443
No 177
>PRK03893 putative sialic acid transporter; Provisional
Probab=33.36 E-value=3.6e+02 Score=24.27 Aligned_cols=9 Identities=11% Similarity=-0.019 Sum_probs=3.5
Q ss_pred HHHHhhhhc
Q 024838 103 MQAFTLKKY 111 (262)
Q Consensus 103 ~~~~~~~~~ 111 (262)
...++.++.
T Consensus 330 ~~g~l~dr~ 338 (496)
T PRK03893 330 VGGFLGDWL 338 (496)
T ss_pred HHHHHHHHh
Confidence 333334444
No 178
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=32.71 E-value=1.5e+02 Score=23.26 Aligned_cols=16 Identities=31% Similarity=0.559 Sum_probs=10.2
Q ss_pred hhhHHHHhHHHHHHHH
Q 024838 43 ILGTLASLVGVMVIAF 58 (262)
Q Consensus 43 ~~g~~l~~~Gv~~l~~ 58 (262)
++|+++..+|+..++.
T Consensus 13 ilgilli~~gI~~Lv~ 28 (191)
T PF04156_consen 13 ILGILLIASGIAALVL 28 (191)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5666666777666554
No 179
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=32.34 E-value=27 Score=28.22 Aligned_cols=45 Identities=20% Similarity=0.375 Sum_probs=26.8
Q ss_pred eeeeehhchHHHHHHHHHHHHhccccc-hhhHhHH-HHHHHHHhhhe
Q 024838 179 VFVTIFNPLTTVIVAVAAYFLVGEKLH-TGCILGG-LIVIIGLYSLL 223 (262)
Q Consensus 179 ~~~s~~~~~~pv~a~~~~~~~~~e~~~-~~~~~G~-~li~~g~~l~~ 223 (262)
...+.+..+.|..+..++..+-+-... +..|+|+ .+++.|..+..
T Consensus 34 l~ig~~~~~~~~lg~~~G~~~~~~i~~~~~~~ig~~iLi~iG~~mi~ 80 (206)
T TIGR02840 34 LIIAVISGLFIFISMLLGKFLAKFLPPKVTEILGAFILIAIGIWIIY 80 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHH
Confidence 334444456677777777765543333 3456655 66678887764
No 180
>PF11381 DUF3185: Protein of unknown function (DUF3185); InterPro: IPR021521 Some members in this bacterial family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=32.10 E-value=21 Score=22.61 Aligned_cols=16 Identities=25% Similarity=0.573 Sum_probs=13.5
Q ss_pred hhhHHHHhHHHHHHHH
Q 024838 43 ILGTLASLVGVMVIAF 58 (262)
Q Consensus 43 ~~g~~l~~~Gv~~l~~ 58 (262)
++|+++.+.|++++.+
T Consensus 2 iigi~Llv~GivLl~~ 17 (59)
T PF11381_consen 2 IIGIALLVGGIVLLYF 17 (59)
T ss_pred eeeehHHHHHHHHHHh
Confidence 7889999999888865
No 181
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=31.93 E-value=29 Score=25.58 Aligned_cols=9 Identities=22% Similarity=0.220 Sum_probs=3.7
Q ss_pred hHHHHHHHH
Q 024838 210 LGGLIVIIG 218 (262)
Q Consensus 210 ~G~~li~~g 218 (262)
+|++.+++.
T Consensus 75 aGvIg~Ill 83 (122)
T PF01102_consen 75 AGVIGIILL 83 (122)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344444443
No 182
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.78 E-value=63 Score=22.76 Aligned_cols=31 Identities=19% Similarity=0.109 Sum_probs=23.5
Q ss_pred HHHHHHHHhhhcccccCCCcchhhhhHHHHhHHHHHH
Q 024838 20 TFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVI 56 (262)
Q Consensus 20 ~~ll~~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~~l 56 (262)
-+.++.+.+||.+++.. +.+..+...|+..+
T Consensus 83 Fv~Fsvfyl~epl~~~~------l~a~~~i~gav~fi 113 (116)
T COG3169 83 FVPFSVFYLKEPLRWNY------LWAFLLILGAVYFI 113 (116)
T ss_pred HHHHHHHHHcCcchHHH------HHHHHHHHHHHHHh
Confidence 34567888999999887 88877777776554
No 183
>PF13347 MFS_2: MFS/sugar transport protein
Probab=31.63 E-value=1.9e+02 Score=25.76 Aligned_cols=24 Identities=8% Similarity=0.072 Sum_probs=15.5
Q ss_pred cchhHHHHhhhchHHHHHHHHHHH
Q 024838 4 VHPTFMTAVVNTIPCMTFIIAVVF 27 (262)
Q Consensus 4 ~s~~~a~~i~~~~pi~~~ll~~~~ 27 (262)
.+++.++++....+++-++...++
T Consensus 34 l~~~~~g~i~~~~~i~dai~dp~~ 57 (428)
T PF13347_consen 34 LSPALAGLILLVGRIWDAITDPLI 57 (428)
T ss_pred CCHHHHHHHHHHHHHhhhhcCCcE
Confidence 356666777777777776655544
No 184
>PRK10110 bifunctional PTS system maltose and glucose-specific transporter subunits IICB; Provisional
Probab=31.39 E-value=1.5e+02 Score=27.86 Aligned_cols=30 Identities=10% Similarity=0.056 Sum_probs=24.0
Q ss_pred hhHHHHHHHhhhhhhHHHHHHHHHHhhcCc
Q 024838 149 IDLWCIIYSGAVSSCLNLFIQLWCIEQRGP 178 (262)
Q Consensus 149 ~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~ 178 (262)
..|+++...|++...+-|..+.+.+++.+.
T Consensus 395 ~~~~~~~~~g~~~~~iyy~vF~f~I~kfnl 424 (530)
T PRK10110 395 TKWYMVPVVAAIWFVVYYVIFRFAITRFNL 424 (530)
T ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 457778888888888888888899888763
No 185
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=30.70 E-value=58 Score=21.11 Aligned_cols=16 Identities=25% Similarity=0.181 Sum_probs=11.7
Q ss_pred hHhHHHHHHHHHhhhe
Q 024838 208 CILGGLIVIIGLYSLL 223 (262)
Q Consensus 208 ~~~G~~li~~g~~l~~ 223 (262)
.+++.++++.|++++-
T Consensus 6 iLi~ICVaii~lIlY~ 21 (68)
T PF05961_consen 6 ILIIICVAIIGLILYG 21 (68)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4577888888877764
No 186
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=30.56 E-value=5.4e+02 Score=25.39 Aligned_cols=45 Identities=11% Similarity=0.093 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHH
Q 024838 88 ILTVASCILWSSFYIMQAFTLKKYPAKLSISAWMNCIGAAQSAVYT 133 (262)
Q Consensus 88 ~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 133 (262)
+..++.++......++...+..+. ..........+.+++.++.+.
T Consensus 599 ~~~~l~~l~~i~G~il~g~L~Dr~-GRr~~l~~~~~lsai~~ll~~ 643 (742)
T TIGR01299 599 FVNFLGTLAVLPGNIVSALLMDKI-GRLRMLAGSMVLSCISCFFLS 643 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555556565 444444445555555544443
No 187
>PF09930 DUF2162: Predicted transporter (DUF2162); InterPro: IPR017199 This group represents a predicted membrane transporter, MTH672 type.
Probab=30.53 E-value=3.1e+02 Score=22.57 Aligned_cols=46 Identities=24% Similarity=0.336 Sum_probs=26.4
Q ss_pred CceeeeehhchHHHHHHHHHHHHhc-cccchhhHhHHHHHHHHHhhh
Q 024838 177 GPVFVTIFNPLTTVIVAVAAYFLVG-EKLHTGCILGGLIVIIGLYSL 222 (262)
Q Consensus 177 ~~~~~s~~~~~~pv~a~~~~~~~~~-e~~~~~~~~G~~li~~g~~l~ 222 (262)
++...+......-...++.+..+.+ .+......+|-++++.|.+..
T Consensus 129 s~~~ig~~~g~if~i~il~ss~i~r~~~~~~p~~LG~~Mi~~GlyfL 175 (224)
T PF09930_consen 129 SGWEIGLVLGLIFFILILLSSFIFRRLKKPYPIILGNFMIFLGLYFL 175 (224)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 3344444444433344444444444 444566689999999998765
No 188
>COG1971 Predicted membrane protein [Function unknown]
Probab=29.93 E-value=52 Score=26.25 Aligned_cols=40 Identities=23% Similarity=0.306 Sum_probs=26.6
Q ss_pred hhchHHHHHHHHHHHHhccccchhhHhHH-HHHHHHHhhhe
Q 024838 184 FNPLTTVIVAVAAYFLVGEKLHTGCILGG-LIVIIGLYSLL 223 (262)
Q Consensus 184 ~~~~~pv~a~~~~~~~~~e~~~~~~~~G~-~li~~g~~l~~ 223 (262)
.....|.++...+.++-+-.-.+-.|+|. .+.+.|+.+..
T Consensus 46 f~~i~pliG~~~g~~~s~~i~~~~~wigf~lL~~lG~~mI~ 86 (190)
T COG1971 46 FQAIMPLIGWFIGKFLSTFIAEWAHWIGFVLLIILGLKMII 86 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556777777777765444456676655 66778988865
No 189
>PRK11469 hypothetical protein; Provisional
Probab=28.99 E-value=29 Score=27.61 Aligned_cols=40 Identities=15% Similarity=0.091 Sum_probs=26.6
Q ss_pred hhchHHHHHHHHHHHHhccccchhhHhHH-HHHHHHHhhhe
Q 024838 184 FNPLTTVIVAVAAYFLVGEKLHTGCILGG-LIVIIGLYSLL 223 (262)
Q Consensus 184 ~~~~~pv~a~~~~~~~~~e~~~~~~~~G~-~li~~g~~l~~ 223 (262)
+..+.|..+...+..+-+-......|+|. .+++.|..+..
T Consensus 46 ~q~~m~~~g~~~G~~l~~~i~~~~~~i~~~lL~~lG~~mi~ 86 (188)
T PRK11469 46 VETLTPLIGWGMGMLASRFVLEWNHWIAFVLLIFLGGRMII 86 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33666777777777765555556667776 45557877765
No 190
>CHL00196 psbY photosystem II protein Y; Provisional
Probab=28.60 E-value=1.1e+02 Score=17.16 Aligned_cols=20 Identities=20% Similarity=0.212 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 024838 85 KGSILTVASCILWSSFYIMQ 104 (262)
Q Consensus 85 ~G~~l~l~a~~~~a~~~v~~ 104 (262)
+=.++-++.+.+|+.|++..
T Consensus 6 liVl~Pil~A~~Wa~fNIg~ 25 (36)
T CHL00196 6 LVIAAPVLAAASWALFNIGR 25 (36)
T ss_pred HHHHHHHHHHHHHHHHHhHH
Confidence 44567788899999999874
No 191
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=27.68 E-value=5.6e+02 Score=24.66 Aligned_cols=18 Identities=17% Similarity=0.390 Sum_probs=9.9
Q ss_pred hhhHhHHHHHHHHHhhhe
Q 024838 206 TGCILGGLIVIIGLYSLL 223 (262)
Q Consensus 206 ~~~~~G~~li~~g~~l~~ 223 (262)
+...+|..+++.|+.++.
T Consensus 507 ~~~~~~~~~~~~g~~~~~ 524 (646)
T PRK05771 507 PLGLIGKYLIIGGVVLII 524 (646)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344556666666655544
No 192
>PF03595 SLAC1: Voltage-dependent anion channel; InterPro: IPR004695 Two members of the Tellurite-Resistance/Dicarboxylate Transporter (TDT) family have been functionally characterised. One is the TehA protein of Escherichia coli which has been implicated in resistance to tellurite; the other is the Mae1 protein of Schizosaccharomyces pombe which functions in the uptake of malate and other dicarboxylates by a proton symport mechanism. These proteins exhibit 10 putative transmembrane a-helical spanners (TMSs).; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3M76_A 3M7C_A 3M7E_A 3M74_A 3M7B_A 3M71_A 3M72_A 3M77_A 3M7L_A 3M75_A ....
Probab=27.66 E-value=3.9e+02 Score=22.86 Aligned_cols=77 Identities=12% Similarity=0.039 Sum_probs=42.1
Q ss_pred hhhHHHHhHHHHHHHHhcCCCCCCCCCCCcccCCCcccchhhHHHHHHHHHHHHHHHHHHH-------HH-HhhhhcCCh
Q 024838 43 ILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVHENWLKGSILTVASCILWSSFYIM-------QA-FTLKKYPAK 114 (262)
Q Consensus 43 ~~g~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~v~-------~~-~~~~~~~~~ 114 (262)
+.+++++..|+..+.. .-+.. .......+..+..++.+.|....+. .. ...++..+|
T Consensus 7 ~f~~~mGtg~l~~~~~-~~~~~--------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~el~~p 71 (330)
T PF03595_consen 7 WFGMVMGTGGLSNLLY-LLPYH--------------FGGLAILSEVLFILALILFLVLLVLYLLRWIRYPKAFKAELRHP 71 (330)
T ss_dssp GGHHHHHHHHHHHHHH-TTTTT--------------STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHHH-HHHHh--------------ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCC
Confidence 7899999988877753 12111 2333456777777777766662222 22 222333366
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 024838 115 LSISAWMNCIGAAQSAVYTI 134 (262)
Q Consensus 115 ~~~~~~~~~~~~v~~~~~~~ 134 (262)
....++.....+...+....
T Consensus 72 ~~~~f~~t~~m~~~~l~~~~ 91 (330)
T PF03595_consen 72 VRSSFFPTFPMALMLLAAFI 91 (330)
T ss_dssp TGGGGGGHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHH
Confidence 66666655555555444444
No 193
>PF11628 TCR_zetazeta: T-cell surface glycoprotein CD3 zeta chain; InterPro: IPR021663 The TCR complex of T-lymphocytes consists of either a TCR alpha/beta or TCR gamma/delta heterodimer co-expressed at the cell surface with the invariant subunits of CD3 labelled gamma, delta, epsilon, zeta, and eta []. The zeta subunit forms either homodimers or heterodimers with eta [], but eta homodimers have not been observed. The structure of the zetazeta transmembrane dimer consists of a left-handed coiled coil with polar contacts. Two aspartic acids are critical for zetazeta dimerisation and assembly with TCR []. The high affinity immunoglobulin epsilon receptor (IgE Fc receptor) subunit gamma associates with a variety of FcR alpha chains to form a functional signaling complex. The gamma subunit has a critical role in allowing the IgE Fc receptor to reach the cell surface and regulates several aspects of the immune response []. This family includes both CD3 zeta subunits and IgE Fc receptor gamma subunits. The gamma chain of the high affinity Fc receptor for IgE has significant structural homology to CD3 zeta and the related CD3 eta subunit and can facilitate T cell receptor expression and signaling in the absence of CD3 zeta and CD3 eta [].; PDB: 2HAC_B.
Probab=27.11 E-value=98 Score=17.01 Aligned_cols=24 Identities=13% Similarity=0.109 Sum_probs=16.1
Q ss_pred hhhchHHHHHHHHHHHhhhccccc
Q 024838 12 VVNTIPCMTFIIAVVFRLEIVDVR 35 (262)
Q Consensus 12 i~~~~pi~~~ll~~~~~~E~~~~~ 35 (262)
+...--+...++..++.+||+..+
T Consensus 8 LDgiL~iYgiiiT~L~~R~K~~~~ 31 (33)
T PF11628_consen 8 LDGILFIYGIIITALYCREKFSKS 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhc
Confidence 334445667778888898888754
No 194
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=26.91 E-value=90 Score=23.11 Aligned_cols=24 Identities=17% Similarity=0.217 Sum_probs=18.8
Q ss_pred chhHHHHhhhchHHHHHHHHHHHh
Q 024838 5 HPTFMTAVVNTIPCMTFIIAVVFR 28 (262)
Q Consensus 5 s~~~a~~i~~~~pi~~~ll~~~~~ 28 (262)
+...++++.+..|++.++++.++.
T Consensus 66 ~~~~aa~l~Y~lPll~li~g~~l~ 89 (135)
T PF04246_consen 66 SLLKAAFLVYLLPLLALIAGAVLG 89 (135)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445678889999999988888664
No 195
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=26.81 E-value=1.4e+02 Score=27.20 Aligned_cols=71 Identities=13% Similarity=0.188 Sum_probs=44.3
Q ss_pred hHHHHHHHhhhhhhHHHHHHHHHHhhcCceeeeehhchHHHHHHHHH---HHHhccccchhhHhHHHHHHHHHhhhe
Q 024838 150 DLWCIIYSGAVSSCLNLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAA---YFLVGEKLHTGCILGGLIVIIGLYSLL 223 (262)
Q Consensus 150 ~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~---~~~~~e~~~~~~~~G~~li~~g~~l~~ 223 (262)
.....=..|.+.+..+-+++.+..+++|..+++......-....... ++..+.+. ..+...+.+.|+.+..
T Consensus 294 ~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~---~~~s~~~l~~gi~~SR 367 (432)
T PF06963_consen 294 VIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPF---SSISAYLLLGGIALSR 367 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCc---hhhHHHHHHHHHHHHH
Confidence 34444456666777888899999999999999998876554333333 33333332 3444455555555544
No 196
>PF11295 DUF3096: Protein of unknown function (DUF3096); InterPro: IPR021446 This entry is represented by the archaeal Thermoproteus tenax spherical virus 1, Orf18. The characteristics of the protein distribution suggest prophage matches and lateral genetic transfer in addition to the phage matches.
Probab=26.01 E-value=89 Score=17.89 Aligned_cols=33 Identities=15% Similarity=0.304 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHhccccchhhHhHHHHHHHHHhh
Q 024838 189 TVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYS 221 (262)
Q Consensus 189 pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l 221 (262)
|+.+.+.|.+++=-+=-....+|.-+++.|+.-
T Consensus 1 pi~aliaGiLiLi~PrllnyiVaiyLI~~G~lg 33 (39)
T PF11295_consen 1 PILALIAGILILIMPRLLNYIVAIYLIVIGLLG 33 (39)
T ss_pred CHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777766555555667788888887654
No 197
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=25.93 E-value=26 Score=25.01 Aligned_cols=47 Identities=19% Similarity=0.177 Sum_probs=29.3
Q ss_pred cchhHHHHhhh-chHHHHHHHHHHHhhhcccccCCCcchhhhhHHHHhHHHHHH
Q 024838 4 VHPTFMTAVVN-TIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVI 56 (262)
Q Consensus 4 ~s~~~a~~i~~-~~pi~~~ll~~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~~l 56 (262)
++.+.+.-+.+ ++-.|+.+.+..+..|....+. ++|..+...|+.+.
T Consensus 76 a~islavpv~nsltfafta~~G~~LGE~~~g~~a------~lGt~liv~Gi~Lc 123 (125)
T KOG4831|consen 76 APISLAVPVTNSLTFAFTAIFGKALGEETQGGLA------LLGTSLIVFGIWLC 123 (125)
T ss_pred CCceeeeeecchhHHHHHHHHHHHhcccccccee------ehhhhHHhhhhhhe
Confidence 33333433333 5667788888876544444444 88888888887554
No 198
>TIGR00893 2A0114 d-galactonate transporter.
Probab=25.69 E-value=4.1e+02 Score=22.43 Aligned_cols=13 Identities=8% Similarity=0.125 Sum_probs=5.4
Q ss_pred HHHHHHHHhhhhc
Q 024838 99 SFYIMQAFTLKKY 111 (262)
Q Consensus 99 ~~~v~~~~~~~~~ 111 (262)
.......+..++.
T Consensus 44 ~~~~~~g~l~d~~ 56 (399)
T TIGR00893 44 VGQFPGGWLLDRF 56 (399)
T ss_pred HHHHhHHHHHHhc
Confidence 3333344444444
No 199
>TIGR02004 PTS-IIBC-malX PTS system, maltose and glucose-specific IIBC component. This model represents a family of PTS enzyme II fused B and C components including and most closely related to the MalX maltose and glucose-specific transporter of E. coli. A pair of paralogous genes from E. coli strain CFT073 score between trusted and noise and may have diverged sufficiently to have an altered substrate specificity.
Probab=25.23 E-value=1.8e+02 Score=27.25 Aligned_cols=30 Identities=10% Similarity=0.022 Sum_probs=24.4
Q ss_pred hhHHHHHHHhhhhhhHHHHHHHHHHhhcCc
Q 024838 149 IDLWCIIYSGAVSSCLNLFIQLWCIEQRGP 178 (262)
Q Consensus 149 ~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~ 178 (262)
..|++++..|++..++-|..+.+.+++.+.
T Consensus 386 ~~~~~~~~vGi~~~~iyy~vF~~~I~kfnl 415 (517)
T TIGR02004 386 TKWYLVPIVAAIWFVVYYFVFKTAITTFDL 415 (517)
T ss_pred cCchhhHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 467778888988888888888899888763
No 200
>PF06197 DUF998: Protein of unknown function (DUF998); InterPro: IPR009339 This is a family of proteins with no known function.
Probab=25.12 E-value=3.2e+02 Score=20.94 Aligned_cols=19 Identities=5% Similarity=0.017 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 024838 117 ISAWMNCIGAAQSAVYTII 135 (262)
Q Consensus 117 ~~~~~~~~~~v~~~~~~~~ 135 (262)
.........++.......+
T Consensus 71 ~~~~ll~~~g~~~i~~g~f 89 (184)
T PF06197_consen 71 WGAVLLALAGLGLILVGLF 89 (184)
T ss_pred HHHHHHHHHHHHHHHhhcC
Confidence 3334444444444444443
No 201
>PHA03049 IMV membrane protein; Provisional
Probab=25.06 E-value=78 Score=20.45 Aligned_cols=21 Identities=29% Similarity=0.316 Sum_probs=13.1
Q ss_pred hHhHHHHHHHHHhhhe-ecccC
Q 024838 208 CILGGLIVIIGLYSLL-WGKEG 228 (262)
Q Consensus 208 ~~~G~~li~~g~~l~~-~~~~~ 228 (262)
.+++.++++.|++++- +.|++
T Consensus 6 ~l~iICVaIi~lIvYgiYnkk~ 27 (68)
T PHA03049 6 ILVIICVVIIGLIVYGIYNKKT 27 (68)
T ss_pred HHHHHHHHHHHHHHHHHHhccc
Confidence 3567777788877764 44433
No 202
>PF15099 PIRT: Phosphoinositide-interacting protein family
Probab=24.98 E-value=24 Score=25.96 Aligned_cols=15 Identities=20% Similarity=0.401 Sum_probs=8.6
Q ss_pred HHHHhhhhhhHHHHH
Q 024838 154 IIYSGAVSSCLNLFI 168 (262)
Q Consensus 154 ~~~~gi~~~~~~~~~ 168 (262)
++..|++.++++|.+
T Consensus 59 ili~GvvvT~vays~ 73 (129)
T PF15099_consen 59 ILIAGVVVTAVAYSF 73 (129)
T ss_pred HHHHhhHhheeeEee
Confidence 444566666666654
No 203
>COG4854 Predicted membrane protein [Function unknown]
Probab=24.92 E-value=1.4e+02 Score=21.66 Aligned_cols=51 Identities=18% Similarity=0.293 Sum_probs=36.7
Q ss_pred hhhhHHHHhHHHHHHHHhcCCCCCCCCCCCcccCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 024838 42 KILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVHENWLKGSILTVASCILWSSFYIMQAFTLKKY 111 (262)
Q Consensus 42 ~~~g~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~ 111 (262)
|++++-.++.|++++.+ +.|.- ...+..+-++.|....+|..+..+..++.
T Consensus 74 qV~~is~Al~gavl~a~-knP~~------------------~~a~~al~~A~ca~ivLy~~fY~YYsrr~ 124 (126)
T COG4854 74 QVFSISAALGGAVLLAL-KNPLH------------------TNAAFALEFAVCAVIVLYLAFYMYYSRRA 124 (126)
T ss_pred EEEEehHHHHHHHHHHh-cCccc------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 68899999999998876 33321 24677788888888888887776655543
No 204
>PRK10655 potE putrescine transporter; Provisional
Probab=24.70 E-value=4.8e+02 Score=23.39 Aligned_cols=37 Identities=8% Similarity=0.199 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhhee
Q 024838 188 TTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLW 224 (262)
Q Consensus 188 ~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~ 224 (262)
-|+++.++..+..-..+......|..+++.|+.++.+
T Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~ 426 (438)
T PRK10655 390 IAFVGALYSFYALYSSGEEAMLYGSIVTFLGWTLYGL 426 (438)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444333222222345688888888777743
No 205
>PF15345 TMEM51: Transmembrane protein 51
Probab=24.64 E-value=1.1e+02 Score=25.25 Aligned_cols=20 Identities=15% Similarity=0.488 Sum_probs=16.8
Q ss_pred hHhHHHHHHHHHhhheeccc
Q 024838 208 CILGGLIVIIGLYSLLWGKE 227 (262)
Q Consensus 208 ~~~G~~li~~g~~l~~~~~~ 227 (262)
.-+|..++++|++|..|.--
T Consensus 10 ~AiG~Gml~LGiiM~vW~~V 29 (233)
T PF15345_consen 10 TAIGVGMLALGIIMIVWNLV 29 (233)
T ss_pred HHHhHhHHHHhhHheeeeec
Confidence 45899999999999988653
No 206
>PF07444 Ycf66_N: Ycf66 protein N-terminus; InterPro: IPR010004 This entry represents Ycf66, a protein that is restricted to the chloroplasts of simple plants and algae. It is also found in the cyanobacteria. The function is unknown. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=24.43 E-value=49 Score=22.62 Aligned_cols=28 Identities=18% Similarity=0.192 Sum_probs=21.5
Q ss_pred ccchhhHhHHHHHHHHHhhheecccCcc
Q 024838 203 KLHTGCILGGLIVIIGLYSLLWGKEGDQ 230 (262)
Q Consensus 203 ~~~~~~~~G~~li~~g~~l~~~~~~~~~ 230 (262)
.+++..++|..++++|..++..++.+++
T Consensus 4 ~~~~~~iLgi~l~~~~~~Ly~lr~~~Pe 31 (84)
T PF07444_consen 4 GFGPSYILGIILILGGLALYFLRFFRPE 31 (84)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHCcc
Confidence 3577889999999999999876554443
No 207
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=24.27 E-value=21 Score=25.75 Aligned_cols=14 Identities=50% Similarity=0.885 Sum_probs=1.2
Q ss_pred hHHHHHHHHHhhhe
Q 024838 210 LGGLIVIIGLYSLL 223 (262)
Q Consensus 210 ~G~~li~~g~~l~~ 223 (262)
+|..++++|++|+.
T Consensus 29 IGiL~VILgiLLli 42 (118)
T PF14991_consen 29 IGILIVILGILLLI 42 (118)
T ss_dssp SS------------
T ss_pred ceeHHHHHHHHHHH
Confidence 56666666665543
No 208
>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Probab=24.20 E-value=95 Score=29.92 Aligned_cols=29 Identities=14% Similarity=0.256 Sum_probs=22.1
Q ss_pred hhHHHHHHHhhhhhhHHHHHHHHHHhhcC
Q 024838 149 IDLWCIIYSGAVSSCLNLFIQLWCIEQRG 177 (262)
Q Consensus 149 ~~~~~~~~~gi~~~~~~~~~~~~~~~~~~ 177 (262)
..|++++..|++-.++-|..+.+.+++..
T Consensus 335 ~~~~~~~~vGi~~~~iYy~vF~~lI~kfn 363 (648)
T PRK10255 335 QNVWMLLVMGVVFFAIYFVLFSAVIRMFN 363 (648)
T ss_pred cCceeehhHHHHHHHHHHHHHHHHHHHcc
Confidence 35667788888777888888888888654
No 209
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=24.10 E-value=5.6e+02 Score=23.43 Aligned_cols=49 Identities=4% Similarity=-0.010 Sum_probs=31.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHH
Q 024838 82 NWLKGSILTVASCILWSSFYIMQAFTLKKYPAKLSISAWMNCIGAAQSAVYTI 134 (262)
Q Consensus 82 ~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 134 (262)
....|+++..+.-+++-+.-++.|+ +. +|+.....-+..+..-++.+.+
T Consensus 297 a~KYgiLFI~LTF~~fflfE~~~~~---~i-HpiQY~LVGlAl~lFYlLLLSl 345 (430)
T PF06123_consen 297 AVKYGILFIGLTFLAFFLFELLSKL---RI-HPIQYLLVGLALVLFYLLLLSL 345 (430)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC---cc-cHHHHHHHHHHHHHHHHHHHHH
Confidence 3446777777777777666666433 44 8887777766666666665555
No 210
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=23.41 E-value=54 Score=25.16 Aligned_cols=18 Identities=6% Similarity=-0.001 Sum_probs=10.0
Q ss_pred eeehhchHHHHHHHHHHH
Q 024838 181 VTIFNPLTTVIVAVAAYF 198 (262)
Q Consensus 181 ~s~~~~~~pv~a~~~~~~ 198 (262)
.+.+.|+-|+++++.+..
T Consensus 77 aa~lvYllPLl~li~ga~ 94 (154)
T PRK10862 77 SALLVYMTPLVGLFLGAA 94 (154)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555666666665544
No 211
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=23.26 E-value=4.9e+02 Score=22.51 Aligned_cols=10 Identities=0% Similarity=-0.027 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 024838 189 TVIVAVAAYF 198 (262)
Q Consensus 189 pv~a~~~~~~ 198 (262)
++-..+.+++
T Consensus 337 ~~g~~~~~~l 346 (392)
T PRK10473 337 VCGSSLWIWL 346 (392)
T ss_pred HHHHHHHHHH
Confidence 3334333333
No 212
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=21.89 E-value=2.3e+02 Score=23.65 Aligned_cols=45 Identities=7% Similarity=-0.089 Sum_probs=29.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHH
Q 024838 82 NWLKGSILTVASCILWSSFYIMQAFTLKKYPAKLSISAWMNCIGAA 127 (262)
Q Consensus 82 ~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v 127 (262)
....|.+++.+...++|.=....|+..|+. +...+-+..++...+
T Consensus 125 ~~~lG~vc~~~nI~~~~sPL~~m~~VIktk-SvE~mPf~Ls~a~fl 169 (243)
T KOG1623|consen 125 VSVLGIVCAVFNISMFAAPLSVIRKVIKTK-SVEYMPFPLSFALFL 169 (243)
T ss_pred eeeeehhhhhhhHHhhhccHHhhhhheecC-ceeeechHHHHHHHH
Confidence 345899999999999988877777776665 544444444333333
No 213
>COG3476 Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog) [Signal transduction mechanisms]
Probab=21.89 E-value=3.4e+02 Score=21.03 Aligned_cols=59 Identities=14% Similarity=-0.006 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhhcCceeeeehhchHHHHHHHHHHHHhcc-ccchhhHhHHHHHHHHHhhh
Q 024838 164 LNLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGE-KLHTGCILGGLIVIIGLYSL 222 (262)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e-~~~~~~~~G~~li~~g~~l~ 222 (262)
-+|..|...-....+-....+..++-+....++.+++++ .+....+.+..+-++.+++.
T Consensus 63 Sa~lvW~~~~~~~~~~~~~~ly~~ql~ln~awspiff~l~~l~~a~i~~lll~~~vl~l~ 122 (161)
T COG3476 63 SAYLVWEKGPGQGTSWLLMFLYLLQLILNFAWSPIFFGLRSLGAALIIILLLWIAVLVLT 122 (161)
T ss_pred HHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHH
Confidence 345555444333333333344448888899999999988 67777777776666555543
No 214
>PF10753 DUF2566: Protein of unknown function (DUF2566); InterPro: IPR019689 This entry is represented by Pseudomonas phage PaP3, Orf56. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=21.66 E-value=85 Score=19.51 Aligned_cols=26 Identities=8% Similarity=0.133 Sum_probs=20.7
Q ss_pred HhhhchHHHHHHHHHHHhhhcccccC
Q 024838 11 AVVNTIPCMTFIIAVVFRLEIVDVRS 36 (262)
Q Consensus 11 ~i~~~~pi~~~ll~~~~~~E~~~~~~ 36 (262)
+++...-.+.+++.+++-||+.+.|-
T Consensus 7 ~~Y~ig~~is~~iT~flskDs~~iRl 32 (55)
T PF10753_consen 7 IFYAIGAVISALITFFLSKDSLRIRL 32 (55)
T ss_pred HHHHHHHHHHHHHHHHHhcchhHHHH
Confidence 45667788899999999999877664
No 215
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=21.61 E-value=41 Score=27.16 Aligned_cols=41 Identities=17% Similarity=0.280 Sum_probs=26.3
Q ss_pred hhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhhee
Q 024838 184 FNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLW 224 (262)
Q Consensus 184 ~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~ 224 (262)
.....+++.++.++...+++.+..+++..+++..|+....+
T Consensus 10 ~~s~~l~~v~l~~~~~~~~~~~~~~i~~~~l~~~g~l~~~l 50 (222)
T TIGR00803 10 FKQNNLVLIALGNLLAAGKQVTQLKILSTALMTLGSLVASL 50 (222)
T ss_pred HHhcchHHHHHhcccccceeeehHHHHHHHHHHHHHHHhHh
Confidence 34455666666777677777666677777776666665443
No 216
>TIGR02611 conserved hypothetical protein TIGR02611. Members of this family are Actinobacterial putative proteins of about 150 amino acids in length with three apparent transmembrane helix and an unusual motif with consensus sequence PGPGW.
Probab=21.41 E-value=3.2e+02 Score=20.11 Aligned_cols=44 Identities=18% Similarity=0.329 Sum_probs=28.3
Q ss_pred hhhHHHHhHHHHHHHHhcCCCCCCCCCCCcccCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024838 43 ILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVHENWLKGSILTVASCILWSSFYIMQAFTLKK 110 (262)
Q Consensus 43 ~~g~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~v~~~~~~~~ 110 (262)
+.|.++.++|++++.. +| .|.+..+++-..+|......++.++.
T Consensus 30 v~G~~~~~~Gi~ml~l-PG-----------------------pG~l~i~iGl~iLatEf~WA~r~L~~ 73 (121)
T TIGR02611 30 VVGWVVLIVGIITIPL-PG-----------------------PGWLTIFIGLAILSLEFVWAQRLLRW 73 (121)
T ss_pred HHHHHHHHHHHHHhcc-CC-----------------------chHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 5667777777766654 33 35566667777777777766665533
No 217
>PRK12437 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=21.33 E-value=69 Score=27.04 Aligned_cols=47 Identities=9% Similarity=0.156 Sum_probs=30.2
Q ss_pred eeeehhchHHHHHHHHHHHHhcc-----ccchhhHhHHHHHHHHHhhheecc
Q 024838 180 FVTIFNPLTTVIVAVAAYFLVGE-----KLHTGCILGGLIVIIGLYSLLWGK 226 (262)
Q Consensus 180 ~~s~~~~~~pv~a~~~~~~~~~e-----~~~~~~~~G~~li~~g~~l~~~~~ 226 (262)
....+..+..+.=.+...+--++ .+|..|+++..+++.|+++..+++
T Consensus 206 ~f~~yl~~Y~~~Rf~iEf~R~~~~~~~~~ls~~Q~~sl~~i~~g~~~~~~~~ 257 (269)
T PRK12437 206 VFALYLIWYSIGRFFIEGLRTDSLMLFGWLRIAQVISIPLIIIGIILIIYRR 257 (269)
T ss_pred hHHHHHHHHHHHHHhhhhhccCchhhhcChhHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555542222 268899999999999988765433
No 218
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=21.31 E-value=6.1e+02 Score=22.82 Aligned_cols=42 Identities=5% Similarity=-0.027 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHH
Q 024838 92 ASCILWSSFYIMQAFTLKKYPAKLSISAWMNCIGAAQSAVYTI 134 (262)
Q Consensus 92 ~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 134 (262)
+..+.+++.......+.+++ ++........+..++.......
T Consensus 72 ~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~~~~~~~~~ 113 (467)
T PRK09556 72 GFSITYGVGKTLVGYYADGK-NTKQFLPFLLILSAICMLGFGA 113 (467)
T ss_pred HHHHHHHHHHhhhhhHhhcc-CccchHHHHHHHHHHHHHHHHH
Confidence 34556666666667777777 5555555554454444444443
No 219
>TIGR02005 PTS-IIBC-alpha PTS system, alpha-glucoside-specific IIBC component. This model represents a family of fused PTS enzyme II B and C domains. A gene from Clostridium has been partially characterized as a maltose transporter, while genes from Fusobacterium and Klebsiella have been proposed to transport the five non-standard isomers of sucrose.
Probab=21.24 E-value=4.5e+02 Score=24.73 Aligned_cols=26 Identities=12% Similarity=0.089 Sum_probs=20.7
Q ss_pred HHHHHhhhhhhHHHHHHHHHHhhcCc
Q 024838 153 CIIYSGAVSSCLNLFIQLWCIEQRGP 178 (262)
Q Consensus 153 ~~~~~gi~~~~~~~~~~~~~~~~~~~ 178 (262)
+++..|++...+-|..+.+.+++.+-
T Consensus 386 ~~i~iGi~~~~iYy~vF~f~I~kfnl 411 (524)
T TIGR02005 386 TQIIIGLCFTAIYFLVFRFLILKFNI 411 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 34777888888888888899988774
No 220
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=21.04 E-value=6.3e+02 Score=22.95 Aligned_cols=22 Identities=23% Similarity=0.196 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhc
Q 024838 90 TVASCILWSSFYIMQAFTLKKY 111 (262)
Q Consensus 90 ~l~a~~~~a~~~v~~~~~~~~~ 111 (262)
.+.+.+.-.+.....-+..++.
T Consensus 51 ~~~~~v~~l~~~~~~~~~~~~i 72 (437)
T TIGR00939 51 TLASQLPSLLFNSLNLFLIFRI 72 (437)
T ss_pred HHHHHHHHHHHHHHHHHHhhcc
Confidence 3344443333333433334444
No 221
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=20.68 E-value=4e+02 Score=24.74 Aligned_cols=55 Identities=11% Similarity=0.114 Sum_probs=34.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHH--HHHHHHHHHHHHHHHHH
Q 024838 81 ENWLKGSILTVASCILWSSFYIMQAFTLKKYPAKLSIS--AWMNCIGAAQSAVYTII 135 (262)
Q Consensus 81 ~~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~ 135 (262)
.+..+|.+-...+.+.-....++.+++.+..++..+.. ...+..++...+++.++
T Consensus 284 ~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~ 340 (493)
T KOG1330|consen 284 ATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFL 340 (493)
T ss_pred cchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHH
Confidence 44556777777788888888888888777665433333 33444445555555443
Done!