Query 024838
Match_columns 262
No_of_seqs 116 out of 1723
Neff 9.4
Searched_HMMs 13730
Date Mon Mar 25 15:16:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024838.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/024838hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 69.8 22 0.0016 27.7 13.4 40 93-133 68-107 (447)
2 d1pw4a_ f.38.1.1 (A:) Glycerol 45.8 60 0.0044 24.9 11.6 12 168-179 364-375 (447)
3 d1iwga8 f.35.1.1 (A:513-566,A: 38.0 60 0.0044 23.3 7.6 29 190-218 95-123 (222)
4 d1pv7a_ f.38.1.2 (A:) Lactose 33.8 74 0.0054 23.6 8.0 14 98-111 273-286 (417)
5 d2e74g1 f.23.26.1 (G:9-35) Pet 25.5 31 0.0023 15.5 2.8 19 84-102 2-20 (27)
6 d1pv7a_ f.38.1.2 (A:) Lactose 23.7 1.2E+02 0.0085 22.4 7.4 16 96-111 55-70 (417)
7 d1fftb2 f.17.2.1 (B:27-117) Cy 9.2 55 0.004 19.9 1.2 18 212-229 28-45 (91)
8 d1kqfb2 f.23.22.1 (B:246-290) 4.4 2.8E+02 0.021 14.2 3.1 23 199-221 7-29 (45)
9 d1eysh2 f.23.10.1 (H:7-43) Pho 4.3 1.3E+02 0.0097 14.8 0.8 18 212-229 13-30 (37)
10 d1iwga7 f.35.1.1 (A:7-37,A:331 2.8 4.5E+02 0.032 17.7 2.9 62 159-220 46-107 (199)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=69.77 E-value=22 Score=27.68 Aligned_cols=40 Identities=8% Similarity=-0.130 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHH
Q 024838 93 SCILWSSFYIMQAFTLKKYPAKLSISAWMNCIGAAQSAVYT 133 (262)
Q Consensus 93 a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 133 (262)
..+.+++......++.+++ ..........++..+..+...
T Consensus 68 ~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~~~~~~~~~~~~~ 107 (447)
T d1pw4a_ 68 ISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVMLFMG 107 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHHhhcc
Confidence 3444555556666666776 554444444444444444433
No 2
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=45.80 E-value=60 Score=24.93 Aligned_cols=12 Identities=25% Similarity=0.196 Sum_probs=5.2
Q ss_pred HHHHHHhhcCce
Q 024838 168 IQLWCIEQRGPV 179 (262)
Q Consensus 168 ~~~~~~~~~~~~ 179 (262)
.+....+..+..
T Consensus 364 ~~~~~~~~~p~~ 375 (447)
T d1pw4a_ 364 IGLHALELAPKK 375 (447)
T ss_dssp HHHHHHHTSCTT
T ss_pred HHHHHHHHcCHH
Confidence 333444444433
No 3
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=38.01 E-value=60 Score=23.28 Aligned_cols=29 Identities=28% Similarity=0.028 Sum_probs=21.3
Q ss_pred HHHHHHHHHHhccccchhhHhHHHHHHHH
Q 024838 190 VIVAVAAYFLVGEKLHTGCILGGLIVIIG 218 (262)
Q Consensus 190 v~a~~~~~~~~~e~~~~~~~~G~~li~~g 218 (262)
+.+.+++..+.+..++....+|..+.+.-
T Consensus 95 ~~~~~~~l~~~g~~~~~~~~~g~i~l~Gi 123 (222)
T d1iwga8 95 VIGALLAATFRGLTNDVYFQVGLLTTIGL 123 (222)
T ss_dssp HHHHHHHHHHTTCCBCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCchhhhhcccccchhhh
Confidence 34555677789999999888887775544
No 4
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=33.84 E-value=74 Score=23.60 Aligned_cols=14 Identities=7% Similarity=0.330 Sum_probs=6.0
Q ss_pred HHHHHHHHHhhhhc
Q 024838 98 SSFYIMQAFTLKKY 111 (262)
Q Consensus 98 a~~~v~~~~~~~~~ 111 (262)
........+..++.
T Consensus 273 ~~~~~~~~~l~~r~ 286 (417)
T d1pv7a_ 273 ASIMFFAPLIINRI 286 (417)
T ss_dssp HHHHTTHHHHHHHH
T ss_pred ccchhhhhhhhccc
Confidence 33333444444444
No 5
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=25.46 E-value=31 Score=15.53 Aligned_cols=19 Identities=5% Similarity=0.347 Sum_probs=14.0
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 024838 84 LKGSILTVASCILWSSFYI 102 (262)
Q Consensus 84 ~~G~~l~l~a~~~~a~~~v 102 (262)
.+|.+.+-++.++||.|.-
T Consensus 2 vlgli~~tl~glf~aayqq 20 (27)
T d2e74g1 2 VLGLVFATLGGLFYAAYQQ 20 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred eeeehHHHHHHHHHHHHHH
Confidence 3677788888888887643
No 6
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=23.66 E-value=1.2e+02 Score=22.37 Aligned_cols=16 Identities=13% Similarity=0.006 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHhhhhc
Q 024838 96 LWSSFYIMQAFTLKKY 111 (262)
Q Consensus 96 ~~a~~~v~~~~~~~~~ 111 (262)
.+.+......++.+++
T Consensus 55 ~~~i~~~~~G~l~Dr~ 70 (417)
T d1pv7a_ 55 FSLLFQPLFGLLSDKL 70 (417)
T ss_dssp HHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3333344444444444
No 7
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=9.22 E-value=55 Score=19.90 Aligned_cols=18 Identities=17% Similarity=-0.213 Sum_probs=8.9
Q ss_pred HHHHHHHHhhheecccCc
Q 024838 212 GLIVIIGLYSLLWGKEGD 229 (262)
Q Consensus 212 ~~li~~g~~l~~~~~~~~ 229 (262)
..+.+.|..++..-|.|+
T Consensus 28 v~v~V~~~~~~~~~ryR~ 45 (91)
T d1fftb2 28 VVIPAILMAVGFAWKYRA 45 (91)
T ss_dssp TTTHHHHHHHTTTTTTTT
T ss_pred HHHHHHHHHHhhheeeec
Confidence 344555555555444443
No 8
>d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]}
Probab=4.41 E-value=2.8e+02 Score=14.25 Aligned_cols=23 Identities=22% Similarity=0.127 Sum_probs=15.1
Q ss_pred HhccccchhhHhHHHHHHHHHhh
Q 024838 199 LVGEKLHTGCILGGLIVIIGLYS 221 (262)
Q Consensus 199 ~~~e~~~~~~~~G~~li~~g~~l 221 (262)
+++...-+...+|+...+++.++
T Consensus 7 lWKgv~Kpl~~~~~~~~~~~~~f 29 (45)
T d1kqfb2 7 LWKGALKPLAAAGFIATFAGLIF 29 (45)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHHHHHH
Confidence 44555566667777777777666
No 9
>d1eysh2 f.23.10.1 (H:7-43) Photosystem II reaction centre subunit H, transmembrane region {Thermochromatium tepidum [TaxId: 1050]}
Probab=4.31 E-value=1.3e+02 Score=14.81 Aligned_cols=18 Identities=17% Similarity=0.206 Sum_probs=10.5
Q ss_pred HHHHHHHHhhheecccCc
Q 024838 212 GLIVIIGLYSLLWGKEGD 229 (262)
Q Consensus 212 ~~li~~g~~l~~~~~~~~ 229 (262)
.-+.++|++.+..++.++
T Consensus 13 Fw~FFagLi~YL~rE~~R 30 (37)
T d1eysh2 13 FWLFFFGLIIYLRREDKR 30 (37)
T ss_dssp HHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHhcccc
Confidence 334566777776665544
No 10
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=2.84 E-value=4.5e+02 Score=17.73 Aligned_cols=62 Identities=11% Similarity=0.115 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHh
Q 024838 159 AVSSCLNLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLY 220 (262)
Q Consensus 159 i~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~ 220 (262)
+++..+.+.......+...+.....+.....+...+....+++.+++.....+..+.+....
T Consensus 46 ~ia~~lv~~vl~l~~rs~~~~li~~~~i~~~i~~~~~~m~~~g~~l~~~s~~~~~i~igi~v 107 (199)
T d1iwga7 46 VEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAIGLLV 107 (199)
T ss_dssp HHHHHHHHHHHHTTCCCTTTTTHHHHHHHHHHHHHHHHHHTTTCCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhheeccccchhhHHHHHHhhcCCCchHHHHHHHHHHHHHHhc
Done!