Query 024840
Match_columns 262
No_of_seqs 104 out of 578
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 15:19:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024840.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024840hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mca_B Protein DOM34, elongati 100.0 1.1E-69 3.8E-74 505.7 21.9 260 1-260 64-323 (390)
2 2vgn_A DOM34; translation term 100.0 2.2E-65 7.6E-70 476.6 32.7 259 2-260 65-329 (386)
3 3j15_A Protein pelota; ribosom 100.0 2.1E-66 7.2E-71 479.1 17.6 246 1-256 62-308 (357)
4 3obw_A Protein pelota homolog; 100.0 4.8E-64 1.6E-68 463.5 25.2 239 2-259 77-316 (364)
5 3oby_A Protein pelota homolog; 100.0 4E-63 1.4E-67 455.3 26.3 234 1-258 62-295 (352)
6 3agj_B Protein pelota homolog; 100.0 4.9E-60 1.7E-64 437.0 28.1 242 2-259 60-303 (358)
7 2qi2_A Pelota, cell division p 100.0 6.6E-58 2.3E-62 420.6 15.5 231 2-256 63-293 (347)
8 3e20_C Eukaryotic peptide chai 100.0 9.9E-49 3.4E-53 369.4 7.0 225 13-255 94-332 (441)
9 1dt9_A ERF1, protein (eukaryot 100.0 1.9E-44 6.5E-49 341.0 7.4 233 5-255 76-327 (437)
10 3agk_A Peptide chain release f 100.0 1E-42 3.6E-47 323.1 17.2 217 22-253 92-324 (373)
11 3ir9_A Peptide chain release f 99.8 1.4E-19 4.8E-24 149.6 8.1 74 182-257 2-75 (166)
12 1x52_A Pelota homolog, CGI-17; 99.7 4.1E-18 1.4E-22 134.4 3.6 67 193-259 3-69 (124)
13 1xbi_A 50S ribosomal protein L 81.9 2.8 9.4E-05 31.7 5.7 40 214-254 16-55 (120)
14 3j21_Z 50S ribosomal protein L 80.6 2.8 9.6E-05 30.5 5.2 35 218-253 6-40 (99)
15 2lbw_A H/ACA ribonucleoprotein 79.1 3.6 0.00012 31.1 5.5 31 224-254 16-46 (121)
16 3v7q_A Probable ribosomal prot 78.1 1.9 6.6E-05 31.5 3.6 32 223-254 14-45 (101)
17 4a18_G RPL30; ribosome, eukary 76.7 2.9 9.8E-05 30.8 4.2 29 226-254 20-48 (104)
18 1w41_A 50S ribosomal protein L 75.9 3.4 0.00012 30.1 4.4 27 227-253 15-41 (101)
19 3on1_A BH2414 protein; structu 75.9 5 0.00017 29.2 5.4 31 224-254 14-44 (101)
20 3v7e_A Ribosome-associated pro 75.6 3.8 0.00013 28.8 4.4 28 227-254 10-37 (82)
21 3u5e_c L32, RP73, YL38, 60S ri 74.9 5.3 0.00018 29.3 5.3 31 224-254 18-48 (105)
22 3iz5_f 60S ribosomal protein L 73.8 5.9 0.0002 29.6 5.3 31 224-254 22-52 (112)
23 1vq8_F 50S ribosomal protein L 73.1 7 0.00024 29.4 5.7 29 226-254 27-55 (120)
24 3cpq_A 50S ribosomal protein L 71.0 5 0.00017 29.7 4.4 28 227-254 20-47 (110)
25 2aif_A Ribosomal protein L7A; 70.4 8.8 0.0003 29.6 5.8 37 217-254 31-67 (135)
26 2fc3_A 50S ribosomal protein L 69.3 7.4 0.00025 29.4 5.1 28 227-254 27-54 (124)
27 2ale_A SNU13, NHP2/L7AE family 68.8 9.5 0.00033 29.4 5.7 36 218-254 23-58 (134)
28 1rlg_A 50S ribosomal protein L 68.5 7.7 0.00026 29.1 5.0 28 227-254 26-53 (119)
29 3vi6_A 60S ribosomal protein L 67.7 4.8 0.00016 30.7 3.7 29 226-254 25-53 (125)
30 3gdz_A Arginyl-tRNA synthetase 67.4 4.1 0.00014 30.2 3.2 28 124-151 59-87 (109)
31 3o85_A Ribosomal protein L7AE; 67.0 12 0.00042 28.2 5.9 29 226-254 29-57 (122)
32 2xzm_U Ribosomal protein L7AE 60.3 12 0.00042 28.4 4.8 29 226-254 22-50 (126)
33 2jnb_A NHP2-like protein 1; sp 54.7 14 0.0005 28.8 4.4 30 225-254 47-76 (144)
34 4dey_A Voltage-dependent L-typ 48.2 32 0.0011 30.7 6.1 91 136-239 139-248 (337)
35 3u5c_M 40S ribosomal protein S 41.1 34 0.0011 26.7 4.5 39 215-254 28-66 (143)
36 1kjw_A Postsynaptic density pr 39.9 28 0.00097 30.1 4.4 22 139-162 105-126 (295)
37 3r8e_A Hypothetical sugar kina 35.4 1E+02 0.0034 26.5 7.3 69 119-190 241-310 (321)
38 4htl_A Beta-glucoside kinase; 30.4 80 0.0027 26.8 5.7 66 119-191 218-283 (297)
39 2zkr_f 60S ribosomal protein L 30.4 34 0.0011 29.5 3.1 31 224-254 131-161 (266)
40 1qxf_A GR2, 30S ribosomal prot 29.9 21 0.00071 24.1 1.4 26 12-37 38-63 (66)
41 3htv_A D-allose kinase, alloki 28.5 93 0.0032 26.7 5.8 69 117-191 218-291 (310)
42 3jyw_G 60S ribosomal protein L 28.0 44 0.0015 24.9 3.1 32 223-254 20-51 (113)
43 3tvt_A Disks large 1 tumor sup 27.8 25 0.00086 30.6 1.9 24 138-163 99-122 (292)
44 3vgl_A Glucokinase; ROK family 27.4 1.8E+02 0.0062 24.8 7.6 70 119-191 233-304 (321)
45 3mcp_A Glucokinase; structural 27.2 1.1E+02 0.0036 27.3 6.1 48 119-167 240-288 (366)
46 2gup_A ROK family protein; sug 27.2 83 0.0028 26.4 5.2 46 119-164 208-253 (292)
47 1ipa_A RRMH, RNA 2'-O-ribose m 25.5 61 0.0021 27.7 4.0 29 227-255 28-57 (274)
48 1x7o_A Avirb, rRNA methyltrans 25.4 62 0.0021 27.9 4.0 29 227-255 40-69 (287)
49 4g9s_B Inhibitor of G-type lys 25.0 1.4E+02 0.0048 21.5 5.4 39 8-51 6-44 (111)
50 3nk6_A 23S rRNA methyltransfer 24.5 70 0.0024 27.4 4.2 29 227-255 34-63 (277)
51 4db3_A Glcnac kinase, N-acetyl 24.2 1.4E+02 0.0048 25.6 6.2 69 119-191 250-318 (327)
52 4dzg_A PLIG; lysozyme inhibito 24.2 22 0.00076 26.4 0.8 24 4-27 4-27 (114)
53 2pk8_A Uncharacterized protein 22.4 1.4E+02 0.0046 21.6 4.6 46 111-162 8-53 (103)
54 2xkx_A Disks large homolog 4; 21.3 1.5E+02 0.0051 28.9 6.3 22 139-162 531-552 (721)
55 2yhw_A Bifunctional UDP-N-acet 21.1 1.5E+02 0.0052 25.4 5.8 45 119-165 265-309 (343)
56 2e2o_A Hexokinase; acetate and 20.5 1.3E+02 0.0044 25.2 5.1 45 120-164 221-265 (299)
57 2qm1_A Glucokinase; alpha-beta 20.3 2.6E+02 0.0089 23.5 7.1 47 119-165 243-290 (326)
58 3pr6_A Trapp-associated protei 20.3 3.2E+02 0.011 21.5 8.9 73 56-134 46-125 (162)
No 1
>3mca_B Protein DOM34, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.1e-69 Score=505.70 Aligned_cols=260 Identities=36% Similarity=0.655 Sum_probs=242.5
Q ss_pred CeeEEEEEEeecCCCCeEEEEEEEEecCccccCCcEEEEEEccCCceEEEEcccChhhHHHHHHhcCCCCCCcEEEEEEe
Q 024840 1 MTFFVSQVVDYDKEGSVLRIRGKNILENEHVKIGAFHTLEIELHRAFVLRKDLWDSLALDTLHQAADPTASADLAVVLMQ 80 (262)
Q Consensus 1 ~~~i~Ve~vef~~~~~~Lri~G~i~~~~e~v~~G~~HT~~i~~~~~i~i~K~~wd~~~le~L~~a~~~~~~~~~~~v~id 80 (262)
+++|+||+++|||++++|||+|+|+.+|+++++|+|||++|+||+||+++|++||+|++++|++|++++.++++++|+||
T Consensus 64 ~L~i~Ve~ief~~~~~~Lri~G~i~~~~~~vk~G~~HTl~ie~~~~i~i~K~~wd~~~le~L~ea~~~~~~~~~~~Vv~d 143 (390)
T 3mca_B 64 KLRILVENMDFDTKAAQLHIKGRTTEYHPEVKMGSYHTLDLELHRNFTLYKNEWDAFALDRVDAACNPSRNAEIGAVVLD 143 (390)
T ss_dssp ---EECCCEEECTTSSCEEEC-CBCSCCC---CCSCCCCCCCSSSCCBCC-CCCCHHHHHHHTTSSSCC--CCEEEEEEE
T ss_pred EEEEEEEEEEecCCCCEEEEEEEEecCCccccccceEEEEEecCCcEEEEEcCCCHHHHHHHHHHhcccccCcEEEEEEE
Confidence 36899999999999999999999999999999999999999999999999999999999999999999888899999999
Q ss_pred CCeEEEEEEecceEEEEEEEEeeCCCCCCCCcchhhHHHHHHHHHHHHHHHhcccccCccEEEEECCcccHHHHHHHHHH
Q 024840 81 EGLAHILLVGRSMTITRSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLL 160 (262)
Q Consensus 81 ~g~a~i~~l~~~~~~~~~~i~~~ip~K~~~g~s~~~~~~~~f~~~v~~~l~~~~~~~~v~~iIIaGPgf~k~~f~~~l~~ 160 (262)
+|+|+||++++++++++++++.++|+||++|++++++++++||++|++++.+++++.++++||||||||+|++|++||.+
T Consensus 144 eg~A~i~ll~~~~~~~~~~i~~~iPkK~~~gg~~~~~~~~~F~~~V~e~l~~~~d~~~v~~iIlaGPgf~K~~f~~~L~~ 223 (390)
T 3mca_B 144 EGLANICLITDYMTILRQRIDQVIPRKRRGDSSAYQKGLDKFYDSVFQSINSEFDFDKLKVVILASPGFVARGLYDYIFS 223 (390)
T ss_dssp TTEEEEEEECSSCEEEEEEEECCCCCCBTTBCHHHHHHHHHHHHHHHHHHHHHCCTTTCSEEEEEESSSHHHHHHHHHHH
T ss_pred CCcEEEEEEcCCEEEEEEEEEEeCCCcCCCCchhHHHHHHHHHHHHHHHHHHHhcccCCcEEEEECChHHHHHHHHHHHH
Confidence 99999999999999999999999999998855589999999999999999999999999999999999999999999999
Q ss_pred HHHhcccchhhhccCcEEEEEcCCCcchhHHHHhcCchhHHhhhhhhHHHHHHHHHHHHHHhhcCCCcEEECHHHHHHHH
Q 024840 161 EAERRQLRPIIENKSRIILVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAH 240 (262)
Q Consensus 161 ~~~~~~~~~~~~~~~ki~~~~~s~~~~~gl~Evl~~~~v~~~l~~~~~~~e~~~l~~f~~~l~~~~~~v~YG~~eV~~Al 240 (262)
++.+..++.++.++++|+++++|+||++|++|+|++|+++++|+++++++|.++|++|++++++|++++|||+++|.+|+
T Consensus 224 ~~~~~~~k~l~~~~~k~~vv~~s~gg~~gl~Evl~~~~v~~~l~~~k~~~E~~lle~f~~~l~~d~g~a~YG~~eV~~Al 303 (390)
T 3mca_B 224 MAVKLDLKQIVKSKNKFVILHSSTGHIHSLNEILKDPAVESKLADTKYVQEIRVLNKFYDVMNEDDRKAWYGPNHVLKAF 303 (390)
T ss_dssp HHHHTTCHHHHHHGGGEEEEECSCSSGGGGGTSSSCHHHHHHHTTSHHHHHHHHHHHHHHHHHHCTTSEEESHHHHHHHH
T ss_pred HHhhccchhhhhhcCeEEEEEcCCCcchhHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEECHHHHHHHH
Confidence 99888888887788899899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCccEEEEecCCcccCCC
Q 024840 241 ERMAVQTLLITDDLFRLVCS 260 (262)
Q Consensus 241 e~GAVe~LLVsd~l~r~~d~ 260 (262)
++|||++|||+|+++|++|+
T Consensus 304 e~GAVetLLI~d~l~r~~d~ 323 (390)
T 3mca_B 304 ELGAIGELLISDSLFRSSDI 323 (390)
T ss_dssp HTTCBSSCEEEETTCCCSCH
T ss_pred HcCCCeEEEEecccccCCCh
Confidence 99999999999999998764
No 2
>2vgn_A DOM34; translation termination factor, protein biosynthesis, translation regulation, cell division, mRNA degradation; 2.5A {Saccharomyces cerevisiae} SCOP: b.38.4.1 c.55.4.2 d.79.3.2 PDB: 2vgm_A 3izq_0 3j16_A*
Probab=100.00 E-value=2.2e-65 Score=476.60 Aligned_cols=259 Identities=26% Similarity=0.461 Sum_probs=241.7
Q ss_pred eeEEEEEEeecCCCCeEEEEEEEEecCcc-----ccCCcEEEEEEccCCceEEEEcccChhhHHHHHHhcCCCCCCcEEE
Q 024840 2 TFFVSQVVDYDKEGSVLRIRGKNILENEH-----VKIGAFHTLEIELHRAFVLRKDLWDSLALDTLHQAADPTASADLAV 76 (262)
Q Consensus 2 ~~i~Ve~vef~~~~~~Lri~G~i~~~~e~-----v~~G~~HT~~i~~~~~i~i~K~~wd~~~le~L~~a~~~~~~~~~~~ 76 (262)
.+|+||+++|||++++|||+|+|+++|++ |++|+|||++|+||+||+++||+|++|++++|++|++++.++.+++
T Consensus 65 L~i~Ve~~~f~~~~~~lri~G~i~~~~~~~~~~~vk~g~~hT~~iep~~~i~i~k~~w~~f~~e~L~~a~~~~~~~~~~~ 144 (386)
T 2vgn_A 65 LKIKVISEDFDMKDEYLKYKGVTVTDESGASNVDIPVGKYLSFTLDYVYPFTIIKQNFNKFMQKLLNEACNIEYKSDTAA 144 (386)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEECCCTTSSSSTTCCTTCEEEEECCSSSCEEEEESCCCHHHHHHHHHTTCTTTTTCEEE
T ss_pred EEEEEEEEEecCCCCEEEEEEEEEccCCccccccccCccEEEEEEeCCCeEEEEEccCChhhHHHHHHHhccccCCCEEE
Confidence 58999999999999999999999999998 9999999999999999999999999999999999999887889999
Q ss_pred EEEeCCeEEEEEEecceEEEEEEEEeeCCCCCCCCcch-hhHHHHHHHHHHHHHHHhcccccCccEEEEECCcccHHHHH
Q 024840 77 VLMQEGLAHILLVGRSMTITRSRIETSIPRKHGPAIAG-YESALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFH 155 (262)
Q Consensus 77 v~id~g~a~i~~l~~~~~~~~~~i~~~ip~K~~~g~s~-~~~~~~~f~~~v~~~l~~~~~~~~v~~iIIaGPgf~k~~f~ 155 (262)
|+||+|.|+||++++++++++++++.++||||+.||++ +++++++||++|++++.+++++.++++||||||||+|++|+
T Consensus 145 vv~d~~~A~i~~l~~~~~~~~~~i~~~iP~K~~~g~~s~~~~~~~~F~~~V~~~l~~~~~~~~v~~lIlaGPg~~k~~f~ 224 (386)
T 2vgn_A 145 VVLQEGIAHVCLVTSSSTILKQKIEYSMPKKKRTTDVLKFDEKTEKFYKAIYSAMKKDLNFDKLKTIILCSPGFYAKILM 224 (386)
T ss_dssp EEEETTEEEEEEECSSCEEEEEEEEC---------CCSSCCHHHHHHHHHHHHHHHHHCCTTTCSEEEEEESTTHHHHHH
T ss_pred EEEECCcEEEEEEECCEEEEEEEEEecCCCCccCCCcchHHHHHHHHHHHHHHHHHHHhcccCCcEEEEECCHHHHHHHH
Confidence 99999999999999999999999999999999877544 88999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccchhhhccCcEEEEEcCCCcchhHHHHhcCchhHHhhhhhhHHHHHHHHHHHHHHhhcCCCcEEECHHH
Q 024840 156 RHLLLEAERRQLRPIIENKSRIILVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKH 235 (262)
Q Consensus 156 ~~l~~~~~~~~~~~~~~~~~ki~~~~~s~~~~~gl~Evl~~~~v~~~l~~~~~~~e~~~l~~f~~~l~~~~~~v~YG~~e 235 (262)
+|+.+++++..++.++.++++|+++++|+++++|++|+|++|+++++|+++++++|.++|++|++++++|++++|||+++
T Consensus 225 ~~l~~~~~~~~~~~~~~~~~ki~vv~~s~~~~~gl~Evl~~~~v~~~L~d~k~~~E~~~l~~f~~~l~~d~~~a~yG~~e 304 (386)
T 2vgn_A 225 DKIFQYAEEEHNKKILDNKGMFFIAHCSTGYLQGINEVLKNPLYASKLQDTKYSKEIMVMDEFLLHLNKDDDKAWYGEKE 304 (386)
T ss_dssp HHHHHHHHHTTCHHHHTTGGGEEEEECSCSSTHHHHHHHHCGGGHHHHHHHHTHHHHHHHHHHHHHHTTTCSSEEESHHH
T ss_pred HHHHHHhhhhccchhhhccCcEEEEECCCCccccHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEeCHHH
Confidence 99999999999999998889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCccEEEEecCCcccCCC
Q 024840 236 VEVAHERMAVQTLLITDDLFRLVCS 260 (262)
Q Consensus 236 V~~Ale~GAVe~LLVsd~l~r~~d~ 260 (262)
|.+|+++|||++|||+|+++|++|+
T Consensus 305 V~~Ale~GAVetLLV~d~l~r~~d~ 329 (386)
T 2vgn_A 305 VVKAAEYGAISYLLLTDKVLHSDNI 329 (386)
T ss_dssp HHHHHHTTCEEEEEEETTGGGSSCH
T ss_pred HHHHHHcCCcEEEEEechhhcCCCc
Confidence 9999999999999999999998763
No 3
>3j15_A Protein pelota; ribosome recycling, ribosome, archaea, translation-transport complex; HET: ADP; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=2.1e-66 Score=479.05 Aligned_cols=246 Identities=24% Similarity=0.375 Sum_probs=235.3
Q ss_pred CeeEEEEEEeecCCCCeEEEEEEEEecC-ccccCCcEEEEEEccCCceEEEEcccChhhHHHHHHhcCCCCCCcEEEEEE
Q 024840 1 MTFFVSQVVDYDKEGSVLRIRGKNILEN-EHVKIGAFHTLEIELHRAFVLRKDLWDSLALDTLHQAADPTASADLAVVLM 79 (262)
Q Consensus 1 ~~~i~Ve~vef~~~~~~Lri~G~i~~~~-e~v~~G~~HT~~i~~~~~i~i~K~~wd~~~le~L~~a~~~~~~~~~~~v~i 79 (262)
+.+|+||++|||+++++|||+|+|+++| +++++|+|||++|+||+||+++||+|++|++++|++|++++.++.+++|+|
T Consensus 62 ~l~i~Ve~~ef~~~~~~Lri~G~i~~~~~~~v~~G~~hT~~ie~~~~i~i~k~~w~~~~~e~L~ea~~~~~~~~~~~Vv~ 141 (357)
T 3j15_A 62 FLGVQAEKINFHKFANQVRVTGPIVYASREDVPLGKYHTIAIEQGTVVTIQKPRWKEHHIERLKEAVAASKRARVMIVVI 141 (357)
T ss_dssp CCEEECSCEEEETTTTEEEECCBEEECCCSSCCCSSBCCEEECSSCCEEECTTCCCHHHHHHHHHSCSSCCCSCCCEEEE
T ss_pred EEEEEEEEEEecCCCCEEEEEEEEEeccccccccccEEEEEecCCCeEEEEEecCCHHHHHHHHHHHhccccCcEEEEEE
Confidence 3689999999999999999999999999 899999999999999999999999999999999999999888889999999
Q ss_pred eCCeEEEEEEecceEEEEEEEEeeCCCCCCCCcchhhHHHHHHHHHHHHHHHhcccccCccEEEEECCcccHHHHHHHHH
Q 024840 80 QEGLAHILLVGRSMTITRSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLL 159 (262)
Q Consensus 80 d~g~a~i~~l~~~~~~~~~~i~~~ip~K~~~g~s~~~~~~~~f~~~v~~~l~~~~~~~~v~~iIIaGPgf~k~~f~~~l~ 159 (262)
|+|+|+||++++++++++.+++.++||||+ |+.+++++++||++|++++.+++++.++++||||||||+|++|++||+
T Consensus 142 d~g~A~i~~l~~~~~~~~~~i~~~ipkK~~--~~~~e~~~~~f~~~Vae~~~~~~~~~~v~~iilaGPg~~k~~f~~~l~ 219 (357)
T 3j15_A 142 DDGEADMALVREYGVEILNSIRHNLGGKRY--NTDRESEEMKFFHDVAKTMEEVMKRENVEKAIVAGPGFVKEDFYKFLK 219 (357)
T ss_dssp CSSCEEEEEEETTEEEEEECCCCCSCSSSS--SCCCCHHHHHHHHHHHHHHHHHHHHHTCCCCEECCSTTHHHHHHHHHH
T ss_pred ECCcEEEEEEeCCEEEEEEEEEecCCCCcc--cchHHHHHHHHHHHHHHHHHHHhcccCCCEEEEECChHHHHHHHHHHH
Confidence 999999999999999999999999999985 567889999999999999999999999999999999999999999999
Q ss_pred HHHHhcccchhhhccCcEEEEEcCCCcchhHHHHhcCchhHHhhhhhhHHHHHHHHHHHHHHhhcCCCcEEECHHHHHHH
Q 024840 160 LEAERRQLRPIIENKSRIILVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVA 239 (262)
Q Consensus 160 ~~~~~~~~~~~~~~~~ki~~~~~s~~~~~gl~Evl~~~~v~~~l~~~~~~~e~~~l~~f~~~l~~~~~~v~YG~~eV~~A 239 (262)
++.++ +++|++++|+|++|++|++|+|++|+++++|+++++++|.++|++|++++++|++++|||+++|.+|
T Consensus 220 ~~~~~--------l~~kvv~v~~s~g~~~gl~Evl~~~~v~~~l~~~k~~~E~~lle~f~~~l~~d~g~a~yG~~eV~~A 291 (357)
T 3j15_A 220 EKYPE--------LAKKVVIEDTSVTGRTGIYEVIKRGVVDRVYQENRVAKEVQLVEKVLENIARNNGLVAYGLKEVEEA 291 (357)
T ss_dssp HHSCC--------SSCEECCCCCSCCHHHHHHHHHHTCTHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTEEESTHHHHHH
T ss_pred HhhHH--------hhCeEEEEeCCCCchhhHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEeCHHHHHHH
Confidence 86532 3567888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCccEEEEecCCcc
Q 024840 240 HERMAVQTLLITDDLFR 256 (262)
Q Consensus 240 le~GAVe~LLVsd~l~r 256 (262)
+++|||++|||+|+++|
T Consensus 292 le~GAVetLLV~d~l~r 308 (357)
T 3j15_A 292 VNYGAVETLLVLDELLK 308 (357)
T ss_dssp HHHTCEEEEEEEHHHHT
T ss_pred HHhCCCcEEEEeccccc
Confidence 99999999999999998
No 4
>3obw_A Protein pelota homolog; SM fold, hydrolase; 2.60A {Sulfolobus solfataricus}
Probab=100.00 E-value=4.8e-64 Score=463.53 Aligned_cols=239 Identities=19% Similarity=0.250 Sum_probs=214.2
Q ss_pred eeEEEEEEeecCCCCeEEEEEEEEecC-ccccCCcEEEEEEccCCceEEEEcccChhhHHHHHHhcCCCCCCcEEEEEEe
Q 024840 2 TFFVSQVVDYDKEGSVLRIRGKNILEN-EHVKIGAFHTLEIELHRAFVLRKDLWDSLALDTLHQAADPTASADLAVVLMQ 80 (262)
Q Consensus 2 ~~i~Ve~vef~~~~~~Lri~G~i~~~~-e~v~~G~~HT~~i~~~~~i~i~K~~wd~~~le~L~~a~~~~~~~~~~~v~id 80 (262)
.+|+||++||||++++|||+|+|+++| +++++|+|||++|+||+||+++||.|++|++++|+++++. ++.+++|+||
T Consensus 77 L~i~Ve~ief~~~~~~Lri~G~iv~~~~~~v~~G~~HT~~ie~~~~i~i~K~~w~~~~le~L~e~~~~--~~~~~~vv~d 154 (364)
T 3obw_A 77 IILKVDYTEFQEFTNRLRIHGIIEDAPERFGIKGAHHTINLDIGDEIIIIKQQWNKYVLDRLKRQANK--RSRIIIALVD 154 (364)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEEECCGGGCCTTCEEEEEECTTCEEEEECSCC----------------CCCEEEEEEE
T ss_pred EEEEEEEEEecCCCCEEEEEEEEEeccccccccceEEEEEEcCCCeEEEEEccCCHHHHHHHHHHhCc--CCCEEEEEEE
Confidence 689999999999999999999999988 7999999999999999999999999999999999999986 4599999999
Q ss_pred CCeEEEEEEecceEEEEEEEEeeCCCCCCCCcchhhHHHHHHHHHHHHHHHhcccccCccEEEEECCcccHHHHHHHHHH
Q 024840 81 EGLAHILLVGRSMTITRSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLL 160 (262)
Q Consensus 81 ~g~a~i~~l~~~~~~~~~~i~~~ip~K~~~g~s~~~~~~~~f~~~v~~~l~~~~~~~~v~~iIIaGPgf~k~~f~~~l~~ 160 (262)
+|+|+||+|++++++++.+++.++|||++ +++++||++|++++.+++++.++++||||||||+|++|++||++
T Consensus 155 ~g~A~i~~l~~~~~~~~~~i~~~iPkK~~-------~~~~~f~~~V~e~~~~~~~~~~v~~iIlaGPg~~K~~f~~~l~~ 227 (364)
T 3obw_A 155 FDEYLIAIPFEQGIKILSEKSLRPLNEEE-------GIIEQNALEIATELAEYVKQYDPDAILLAGPGFFKEEVSKKVNA 227 (364)
T ss_dssp TTEEEEEEECSSCEECCCEEECGGGCSST-------THHHHHHHHHHHHHHHHHHHHCCSEEEEECSSSHHHHHHHHHHT
T ss_pred CCcEEEEEEeCCEEEEEEEEEeeCccchh-------HHHHHHHHHHHHHHHHHhccccCCEEEEECChHHHHHHHHHHHH
Confidence 99999999999999999999999999973 57899999999999999999999999999999999999999988
Q ss_pred HHHhcccchhhhccCcEEEEEcCCCcchhHHHHhcCchhHHhhhhhhHHHHHHHHHHHHHHhhcCCCcEEECHHHHHHHH
Q 024840 161 EAERRQLRPIIENKSRIILVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAH 240 (262)
Q Consensus 161 ~~~~~~~~~~~~~~~ki~~~~~s~~~~~gl~Evl~~~~v~~~l~~~~~~~e~~~l~~f~~~l~~~~~~v~YG~~eV~~Al 240 (262)
+++ +.++.++++|++|++|++|+|++|+++++|+++++++|.++|++|++++++|++++|||+++|.+|+
T Consensus 228 ~~~----------~~~i~~vd~s~g~~~gl~Evl~~~~v~~~l~~~k~~~E~~lle~f~~~l~~d~g~a~yG~~eV~~Al 297 (364)
T 3obw_A 228 ILK----------NKKIYIDSVSSATRAGLHEVLKRDIIDKIMTDYEIAIGAKKMEKAMELLAKQPELVTYGLEQVKNAI 297 (364)
T ss_dssp TTC----------CSEEEEECCSCSSHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSSEEESHHHHHHHH
T ss_pred Hhh----------cCeEEEEeCCCCchHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEECHHHHHHHH
Confidence 652 3467889999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCccEEEEecCCcccCC
Q 024840 241 ERMAVQTLLITDDLFRLVC 259 (262)
Q Consensus 241 e~GAVe~LLVsd~l~r~~d 259 (262)
++|||++|||+|+++|+.|
T Consensus 298 e~GAVetLLV~d~l~r~~d 316 (364)
T 3obw_A 298 EMGAVETVLVIEDLLSSDE 316 (364)
T ss_dssp HHTCEEEEEEEGGGGSSCH
T ss_pred HhCCCcEEEEeccCccccc
Confidence 9999999999999999764
No 5
>3oby_A Protein pelota homolog; SM fold, hydrolase; 2.90A {Archaeoglobus fulgidus}
Probab=100.00 E-value=4e-63 Score=455.31 Aligned_cols=234 Identities=20% Similarity=0.321 Sum_probs=210.8
Q ss_pred CeeEEEEEEeecCCCCeEEEEEEEEecCccccCCcEEEEEEccCCceEEEEcccChhhHHHHHHhcCCCCCCcEEEEEEe
Q 024840 1 MTFFVSQVVDYDKEGSVLRIRGKNILENEHVKIGAFHTLEIELHRAFVLRKDLWDSLALDTLHQAADPTASADLAVVLMQ 80 (262)
Q Consensus 1 ~~~i~Ve~vef~~~~~~Lri~G~i~~~~e~v~~G~~HT~~i~~~~~i~i~K~~wd~~~le~L~~a~~~~~~~~~~~v~id 80 (262)
+++|+||++||||++++|||+|+|+++|++ |+|||++|+||+||+++| +|++|++++|++|++++.++.+++|+||
T Consensus 62 ~L~i~Ve~ief~~~~~~Lri~G~i~~~~~~---G~~hT~~iep~~~i~i~k-~w~~~~~e~L~ea~~~~~~~~~~~vv~d 137 (352)
T 3oby_A 62 RLGIEVEKVEFHRFANRLRVSGKIVAGIEE---SGYHTLNITVGKELSIIK-KWKPEQLERLRRAVEDSNRPEIVMLTIE 137 (352)
T ss_dssp CEEEEEEEEEECSSSSCEEEEEEEEEC-------CEEEEEECTTCCEEEEE-ECCHHHHHHHHHHHTTSCCCCEEEEEEE
T ss_pred EEEEEEEEEEecCCCCEEEEEEEEEecCCC---CeEEEEEEeCCCeEEEEE-cCCHHHHHHHHHHhhccccCcEEEEEEE
Confidence 468999999999999999999999999988 999999999999999999 9999999999999998778899999999
Q ss_pred CCeEEEEEEecceEEEEEEEEeeCCCCCCCCcchhhHHHHHHHHHHHHHHHhcccccCccEEEEECCcccHHHHHHHHHH
Q 024840 81 EGLAHILLVGRSMTITRSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLL 160 (262)
Q Consensus 81 ~g~a~i~~l~~~~~~~~~~i~~~ip~K~~~g~s~~~~~~~~f~~~v~~~l~~~~~~~~v~~iIIaGPgf~k~~f~~~l~~ 160 (262)
+|+|+||+|++++++++++++.++|||+. ++ .++||++|++++.++ ++++||||||||+|++|++||.+
T Consensus 138 ~g~A~i~~l~~~~~~~~~~i~~~ipkK~g--~~-----r~~F~~~V~e~~~~~----~v~~iIlaGPg~~K~~f~~~l~~ 206 (352)
T 3oby_A 138 EGYAVAGVLRQWGVEEIFEERMGYGKGMG--DS-----RKEFFGEVAAKLESF----DFKYLIVAGPGFAKNDFLDFLKE 206 (352)
T ss_dssp TTEEEEEEEETTEEEEEEEEEC----------C-----CCCHHHHHHHHHHHH----CCSEEEEECSTTHHHHHHHHHHH
T ss_pred CCcEEEEEEeCCEEEEEEEEeccCCCccc--hh-----HHHHHHHHHHHHHhc----CCCEEEEECCHHHHHHHHHHHHH
Confidence 99999999999999999999999999863 32 379999999999998 69999999999999999999999
Q ss_pred HHHhcccchhhhccCcEEEEEcCCCcchhHHHHhcCchhHHhhhhhhHHHHHHHHHHHHHHhhcCCCcEEECHHHHHHHH
Q 024840 161 EAERRQLRPIIENKSRIILVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAH 240 (262)
Q Consensus 161 ~~~~~~~~~~~~~~~ki~~~~~s~~~~~gl~Evl~~~~v~~~l~~~~~~~e~~~l~~f~~~l~~~~~~v~YG~~eV~~Al 240 (262)
++++ +++||+++++|++|++|++|+|++|+++++|+++++++|.++|++||++|++| +++|||+++|.+|+
T Consensus 207 ~~~~--------l~~kvv~v~~s~gg~~gl~Evl~~~~v~~~L~~~k~~~E~~~le~f~~~l~~d-~~a~YG~~eV~~Al 277 (352)
T 3oby_A 207 RYPE--------MAKNAVVVDVSSVGSRGFIEILKRRVVDKIVGEVRLAEEAEYIDRLLEGIAKG-ERVAYGLDEVREAH 277 (352)
T ss_dssp HCHH--------HHTTEEECCCCCCHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CSEEESHHHHHHHH
T ss_pred HHHH--------hhCcEEEEECCCCchhhHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHhcC-CcEEECHHHHHHHH
Confidence 6533 24578889999999999999999999999999999999999999999999999 99999999999999
Q ss_pred hccCccEEEEecCCcccC
Q 024840 241 ERMAVQTLLITDDLFRLV 258 (262)
Q Consensus 241 e~GAVe~LLVsd~l~r~~ 258 (262)
++|||++|||+|+++|+.
T Consensus 278 e~GAVetLLIsd~l~r~~ 295 (352)
T 3oby_A 278 NYRAIEVLLVADEFLLEE 295 (352)
T ss_dssp TTTCEEEEEEEHHHHHHH
T ss_pred HcCCceEEEEeccchhcc
Confidence 999999999999999854
No 6
>3agj_B Protein pelota homolog; GTP binding, translation-hydrolase complex; HET: GTP; 2.30A {Aeropyrum pernix}
Probab=100.00 E-value=4.9e-60 Score=436.98 Aligned_cols=242 Identities=17% Similarity=0.246 Sum_probs=229.8
Q ss_pred eeEEEEEEeecCCCCeEEEEEEEEecC-ccccCCcEEEEEEccCCceEEEEcc-cChhhHHHHHHhcCCCCCCcEEEEEE
Q 024840 2 TFFVSQVVDYDKEGSVLRIRGKNILEN-EHVKIGAFHTLEIELHRAFVLRKDL-WDSLALDTLHQAADPTASADLAVVLM 79 (262)
Q Consensus 2 ~~i~Ve~vef~~~~~~Lri~G~i~~~~-e~v~~G~~HT~~i~~~~~i~i~K~~-wd~~~le~L~~a~~~~~~~~~~~v~i 79 (262)
++|+||+++||++.++|||+|+|+.+| +||++|+|||++|+||+||+++||+ |++|++++|++| +. ++.+++|+|
T Consensus 60 l~i~Ve~~~f~~~~~~Lri~G~i~~~~~~~v~~g~~ht~~ie~~~~i~i~k~~~w~~~~le~L~~~-~~--~~~~~~vvv 136 (358)
T 3agj_B 60 LRIRLDSIEFQPFTGKLRISGIVVEGPDEFGVKGRRHSTAVSIGTWLVVERDKGWSEQELERLAAG-RA--RGTAVIAAV 136 (358)
T ss_dssp EEEEEEEEEECTTSCEEEEEEEEEECCGGGCCTTSEEEEEEETTCCEEEECTTCCCHHHHHHHHHC-CC--CCEEEEEEE
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEccCCCcccccccEEEEEEeCCCcEEEEEecCCCHhhHHHHHhh-Cc--CCCEEEEEE
Confidence 689999999999999999999999999 7999999999999999999999997 999999999999 44 559999999
Q ss_pred eCCeEEEEEEecceEEEEEEEEeeCCCCCCCCcchhhHHHHHHHHHHHHHHHhcccccCccEEEEECCcccHHHHHHHHH
Q 024840 80 QEGLAHILLVGRSMTITRSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLL 159 (262)
Q Consensus 80 d~g~a~i~~l~~~~~~~~~~i~~~ip~K~~~g~s~~~~~~~~f~~~v~~~l~~~~~~~~v~~iIIaGPgf~k~~f~~~l~ 159 (262)
|+++|+||++++++++++.+++.++|||| | +++++.+++||++|++++.+++++.++++||||||||+|++|.+||.
T Consensus 137 d~~~A~i~~l~~~~~~~~~~i~~~vpkK~--g-~q~e~~~~~f~~~Va~~l~~~~~~~~~~~lIlAGpg~~k~~f~~~L~ 213 (358)
T 3agj_B 137 DYDEFALAVLAGHGMKILEDTSARLPGKD--D-PSREQEVEKYVDRAAKRIVEEAARHRSPIAVIAGPGQLKTSVAEKVQ 213 (358)
T ss_dssp CSSEEEEEEEESSCEEEEEEEECCCCCTT--S-TTHHHHHHHHHHHHHHHHHHHHHHHTCSEEEEEESSSHHHHHHHHHH
T ss_pred ECCcEEEEEEeCCEEEEEEEEEecCCCCC--c-hHHHHHHHHHHHHHHHHHHHHhcccCCcEEEEECCHHHHHHHHHHHH
Confidence 99999999999999999999999999998 3 45889999999999999999998889999999999999999999999
Q ss_pred HHHHhcccchhhhccCcEEEEEcCCCcchhHHHHhcCchhHHhhhhhhHHHHHHHHHHHHHHhhcCCCcEEECHHHHHHH
Q 024840 160 LEAERRQLRPIIENKSRIILVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVA 239 (262)
Q Consensus 160 ~~~~~~~~~~~~~~~~ki~~~~~s~~~~~gl~Evl~~~~v~~~l~~~~~~~e~~~l~~f~~~l~~~~~~v~YG~~eV~~A 239 (262)
++++++ ++.++++|+++++|++|+|++++++++|+++++++|.++|++|++++++|++++|||+++|.+|
T Consensus 214 ~~~~~~----------~i~~v~~s~g~~~gl~E~l~~~~v~~~l~~~k~~~e~~ll~~f~~~l~~d~g~a~yG~~eV~~A 283 (358)
T 3agj_B 214 RAMPSL----------KVATVDTSMGGVAGVREALRRESVTRILRELSIVEAEGVLEEFLRRIAKSRDTVAYTPGEVLAV 283 (358)
T ss_dssp HHSTTS----------EEEEEECSCCHHHHHHHHTTSHHHHHHTTTCHHHHHHHHHHHHHHHHHHCGGGEEESHHHHHHH
T ss_pred HHhhhc----------eEEEEEcCCCCchhHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEECHHHHHHH
Confidence 987542 5678999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCccEEEEecCCcccCC
Q 024840 240 HERMAVQTLLITDDLFRLVC 259 (262)
Q Consensus 240 le~GAVe~LLVsd~l~r~~d 259 (262)
+++|||++|||+|+++|++|
T Consensus 284 l~~GAVetLLV~d~l~r~~d 303 (358)
T 3agj_B 284 ARMGAVDTVLLVDTLLHSPD 303 (358)
T ss_dssp HHHTCEEEEEEEHHHHTCSS
T ss_pred HHhCCceEEEEecccccCCC
Confidence 99999999999999999754
No 7
>2qi2_A Pelota, cell division protein pelota related protein; DOM34, cell cycle; 2.90A {Thermoplasma acidophilum} SCOP: b.38.4.1 c.55.4.2 d.79.3.2
Probab=100.00 E-value=6.6e-58 Score=420.57 Aligned_cols=231 Identities=20% Similarity=0.343 Sum_probs=205.7
Q ss_pred eeEEEEEEeecCCCCeEEEEEEEEecCccccCCcEEEEEEccCCceEEEEcccChhhHHHHHHhcCCCCCCcEEEEEEeC
Q 024840 2 TFFVSQVVDYDKEGSVLRIRGKNILENEHVKIGAFHTLEIELHRAFVLRKDLWDSLALDTLHQAADPTASADLAVVLMQE 81 (262)
Q Consensus 2 ~~i~Ve~vef~~~~~~Lri~G~i~~~~e~v~~G~~HT~~i~~~~~i~i~K~~wd~~~le~L~~a~~~~~~~~~~~v~id~ 81 (262)
++|+||+++||+++++||++|.++.+|++ ++|+|||++++||++|+++| +|++|++++|++|++++.++.+++|+||+
T Consensus 63 l~i~Ve~v~f~~~~~~Lri~G~vv~~~~~-~~g~~htl~ie~~~~i~i~k-~w~~f~~e~L~~a~~~~~~~~~~~vv~d~ 140 (347)
T 2qi2_A 63 IRLKVEKIEFQDFDNRLRILGTVIEGPED-TKGKHQSITVTVDSEISITK-EWDDQHIDLLKEATDEKYVTVYTAVAMDE 140 (347)
T ss_dssp EEEEECCTTCSCEEEEEEECC----------CCSEEEEEECTTCEEEEES-CCCHHHHHHHHHHTCHHHHCCEEEEEECS
T ss_pred EEEEEEEEEccCCCCEEecceEEEEcCCC-CCccEEEEEEcCCCeEEEEE-cCCHhHHHHHHHHhccccCCCEEEEEEeC
Confidence 68999999999999999999999999998 78999999999999999999 99999999999999986566999999999
Q ss_pred CeEEEEEEecceEEEEEEEEeeCCCCCCCCcchhhHHHHHHHHHHHHHHHhcccccCccEEEEECCcccHHHHHHHHHHH
Q 024840 82 GLAHILLVGRSMTITRSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLE 161 (262)
Q Consensus 82 g~a~i~~l~~~~~~~~~~i~~~ip~K~~~g~s~~~~~~~~f~~~v~~~l~~~~~~~~v~~iIIaGPgf~k~~f~~~l~~~ 161 (262)
|+|+||++++++++++.+++.++|+|++ ||++. .++||++|++++.++ + ++||||||||+|++|.+|++++
T Consensus 141 ~~A~i~~l~~~~~~~~~~i~~~~~Kk~~--~s~f~--r~~F~~~V~~~~~~~-d----~~lIlaGPg~~k~~f~~~l~~~ 211 (347)
T 2qi2_A 141 DEAQIFLIHPYGIQQVGTVYSGRSGKYA--EGNYS--EASYFDQIVNALKNY-S----NSIIILGPGFARDRFARYCAQR 211 (347)
T ss_dssp SEEEEEEECSSCEEEEEEEECCHHHHC------CC--HHHHHHHHHHHHHTC-C----SCEEEEESSSHHHHHHHHHHHT
T ss_pred CcEEEEEEECCEEEEEEEEeecCCCccc--cchhh--HHHHHHHHHHHHHhc-C----CeEEEECCHHHHHHHHHHHHHh
Confidence 9999999999999999999999888775 44332 389999999999998 2 8999999999999999999998
Q ss_pred HHhcccchhhhccCcEEEEEcCCCcchhHHHHhcCchhHHhhhhhhHHHHHHHHHHHHHHhhcCCCcEEECHHHHHHHHh
Q 024840 162 AERRQLRPIIENKSRIILVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHE 241 (262)
Q Consensus 162 ~~~~~~~~~~~~~~ki~~~~~s~~~~~gl~Evl~~~~v~~~l~~~~~~~e~~~l~~f~~~l~~~~~~v~YG~~eV~~Ale 241 (262)
++ +++.++++|+++++|++|+|++++++++|+++++++|.++|++|+++++++ ++|||+++|.+|++
T Consensus 212 ~~-----------~~i~~v~~s~~~~~gl~Evl~~~~v~~~L~~~k~~~E~~~l~~f~~~l~~d--~~~YG~~eV~~Ale 278 (347)
T 2qi2_A 212 GV-----------NVIGSFPANRTDSGAVYEFITSADGAKLLSNERIARDKEIVDEFLVAVKKD--MGVYGRDQTESALQ 278 (347)
T ss_dssp SC-----------CCSCCEECSSSSHHHHHHHHHSHHHHHHHTTSHHHHHHHHHHHHHHHHHTT--CEEESHHHHHHHHH
T ss_pred hc-----------ceEEEEecCCCccccHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHhcC--CEEEcHHHHHHHHH
Confidence 63 355688999999999999999999999999999999999999999999998 99999999999999
Q ss_pred ccCccEEEEecCCcc
Q 024840 242 RMAVQTLLITDDLFR 256 (262)
Q Consensus 242 ~GAVe~LLVsd~l~r 256 (262)
+|||++|||+|+++|
T Consensus 279 ~GAVetLlV~d~l~r 293 (347)
T 2qi2_A 279 MGALSDLIITDEMFR 293 (347)
T ss_dssp TTCEEEEEEEHHHHT
T ss_pred cCCCeEEEEeccccc
Confidence 999999999999986
No 8
>3e20_C Eukaryotic peptide chain release factor subunit 1; SUP35, SUP45, translation termination, peptide release, GTP- nucleotide-binding; 3.50A {Schizosaccharomyces pombe}
Probab=100.00 E-value=9.9e-49 Score=369.40 Aligned_cols=225 Identities=18% Similarity=0.246 Sum_probs=97.7
Q ss_pred CCCCeEEEEEEEEecCccccCCcEEEEEEccCCceEEEEc-ccChhhHHHHHHhcCCCCCCcEEEEEEeCCeEEEEEEec
Q 024840 13 KEGSVLRIRGKNILENEHVKIGAFHTLEIELHRAFVLRKD-LWDSLALDTLHQAADPTASADLAVVLMQEGLAHILLVGR 91 (262)
Q Consensus 13 ~~~~~Lri~G~i~~~~e~v~~G~~HT~~i~~~~~i~i~K~-~wd~~~le~L~~a~~~~~~~~~~~v~id~g~a~i~~l~~ 91 (262)
|.++.++++|.|+.++ +.|+|||++|+||+||+++|| +|++|++++|++|++++. .+++|+||+++|.++++.+
T Consensus 94 p~~g~v~~~G~~~~e~---~~~~~~T~~iep~~pi~i~k~~~w~~~~le~L~eal~~~~--~~gvVvvD~~ga~i~~l~g 168 (441)
T 3e20_C 94 PDNGLVIYCGEVIMEG---NKTRKLNIDFEPFKPINTSQYLCDNKFHTEALAELLESDQ--RFGFIVMDGHQTLYGVVSG 168 (441)
T ss_dssp TTSCCEEEEEEECCGG---GCCEEEEEEECCSCCTTCCEEEEESSCCCTTGGGGC-------------------------
T ss_pred CCCCEEEEeceeeccC---CceeEEEEEecCCCceEEEEEccCCHHHHHHHHHHhCccC--cEEEEEEecCCeEEEEEec
Confidence 7789999999999765 358999999999999999999 799999999999999976 8999999999999999999
Q ss_pred ceEEEEEEEEeeCCCCCCC-Ccch------hhHHHHHHHHHHHHHHHhccc---ccCccEEEEECCcccHHHHHH--HHH
Q 024840 92 SMTITRSRIETSIPRKHGP-AIAG------YESALNKFFENVLQAFLKHVD---FNVVRCAVIASPGFTKDQFHR--HLL 159 (262)
Q Consensus 92 ~~~~~~~~i~~~ip~K~~~-g~s~------~~~~~~~f~~~v~~~l~~~~~---~~~v~~iIIaGPgf~k~~f~~--~l~ 159 (262)
++++++.+++.++|+||++ |||+ +++++++||+.|++.+.+++. +.++++||||||||+|++|.+ |+.
T Consensus 169 ~~~evl~~i~~~vPkK~~~GG~S~~RF~R~ree~~~~f~~~Vae~l~~~~~~~~~~~v~~lVlaGPg~~k~~f~~~~~l~ 248 (441)
T 3e20_C 169 SAREVLQRFTVDLPKKHGRGGQSALRFARLRDEKRHNYVRKVAEGAVQHFITDDKPNVAGIVLAGSADFKTELGQSDLFD 248 (441)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CeEEEEEEEEecCCCcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcCEEEEECCHHHHHHHHHhcccC
Confidence 9999999999999999877 5776 778899999999999999986 568999999999999999998 776
Q ss_pred HHHHhcccchhhhccCcE-EEEEcCCCcchhHHHHhcCchhHHhhhhhhHHHHHHHHHHHHHHhhcCCCcEEECHHHHHH
Q 024840 160 LEAERRQLRPIIENKSRI-ILVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEV 238 (262)
Q Consensus 160 ~~~~~~~~~~~~~~~~ki-~~~~~s~~~~~gl~Evl~~~~v~~~l~~~~~~~e~~~l~~f~~~l~~~~~~v~YG~~eV~~ 238 (262)
.+++ .++ .++++|+||++|++|+|++ ++++|+++++++|.++|++|++++++|++++|||+++|.+
T Consensus 249 ~~L~-----------~kvv~~vdvs~gg~~Gl~EvL~~--~~~~L~d~k~~~E~~lle~f~~~l~~d~g~a~YG~~eV~~ 315 (441)
T 3e20_C 249 QRLQ-----------SRIIKTVDVSYGGDAGFNQAIEL--AADTLSNVKYVQEKKLIQRFFDEISLDSGKYCFGVVDTMN 315 (441)
T ss_dssp ----------------------------------------------CHHHHHHHHHHHHHHHHHHTTCSCCCCSHHHHHH
T ss_pred HHHH-----------hheEEEEECCCCCccCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEECHHHHHH
Confidence 6543 233 5789999999999999999 4899999999999999999999999999999999999999
Q ss_pred HHhccCccEEEEecCCc
Q 024840 239 AHERMAVQTLLITDDLF 255 (262)
Q Consensus 239 Ale~GAVe~LLVsd~l~ 255 (262)
|+++|||++|||+|++.
T Consensus 316 Ale~GAVetLLIsD~l~ 332 (441)
T 3e20_C 316 ALQEGAVETLLCFADLD 332 (441)
T ss_dssp HHHSSCCSEEEEETTCC
T ss_pred HHHhCCccEEEEecccc
Confidence 99999999999999996
No 9
>1dt9_A ERF1, protein (eukaryotic peptide chain release factor subunit 1); tRNA mimicry, protein sythesis, STOP codon recognition, peptidyl-tRNA hydrolysis; 2.70A {Homo sapiens} SCOP: c.55.4.2 d.79.3.2 d.91.1.1 PDB: 3e1y_A* 2ktu_A 2ktv_A 2lgt_A 2hst_A
Probab=100.00 E-value=1.9e-44 Score=340.99 Aligned_cols=233 Identities=14% Similarity=0.190 Sum_probs=200.3
Q ss_pred EEEEEee-----cCCCCeEEEEEEEEecCccccCCcEEEEEEccCCce--EEEEcccChhhHHHHHHhcCCCCCCcEEEE
Q 024840 5 VSQVVDY-----DKEGSVLRIRGKNILENEHVKIGAFHTLEIELHRAF--VLRKDLWDSLALDTLHQAADPTASADLAVV 77 (262)
Q Consensus 5 ~Ve~vef-----~~~~~~Lri~G~i~~~~e~v~~G~~HT~~i~~~~~i--~i~K~~wd~~~le~L~~a~~~~~~~~~~~v 77 (262)
+++..+| .+..+.+.++|.++.++.+ ++|||++++||.|+ +++| +|++|++++|++++++.. .+++|
T Consensus 76 ~~~~~~l~~~~~~~~~Glvvf~g~~~~~~g~---~~~~tl~~e~~~pi~~~~~~-~~~~f~l~~L~~~~~~~~--~~~vv 149 (437)
T 1dt9_A 76 TSVQQRLKLYNKVPPNGLVVYCGTIVTEEGK---EKKVNIDFEPFKPINTSLYL-CDNKFHTEALTALLSDDS--KFGFI 149 (437)
T ss_dssp HHHHHHHTTCSSCCTTCEEEEEEEEECGGGC---EEEEEEEECCSCCTTCCEEE-EESSCCCHHHHHHCCCCC--EEEEE
T ss_pred HHHHHHhccCCCCCCCeEEEEeCccccCCCc---eEEEEEEecCCCCCceeEEE-ecChhhHHHHHHHhcCCC--CEEEE
Confidence 3344556 3555666666666554422 58999999999999 6666 899999999999999955 89999
Q ss_pred EEeCCeEEEEEEecceEEEEEEEEeeCCCCCCC-Ccch------hhHHHHHHHHHHHHHHHhcccc---cCccEEEEECC
Q 024840 78 LMQEGLAHILLVGRSMTITRSRIETSIPRKHGP-AIAG------YESALNKFFENVLQAFLKHVDF---NVVRCAVIASP 147 (262)
Q Consensus 78 ~id~g~a~i~~l~~~~~~~~~~i~~~ip~K~~~-g~s~------~~~~~~~f~~~v~~~l~~~~~~---~~v~~iIIaGP 147 (262)
+||+++|.||++++++++++.+++.++|+||++ |||+ +++.+++||++|++++.+++.+ .++++||||||
T Consensus 150 vvd~~~A~i~~~~~~~~~~~~~i~~~~P~K~~~Gg~s~~Rf~R~ree~~~~f~~~Vae~l~~~~~~~~~~~~~~lIlaGp 229 (437)
T 1dt9_A 150 VIDGSGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAETAVQLFISGDKVNVAGLVLAGS 229 (437)
T ss_dssp ECCSSCCCEEEEETTEEEEEECCCCCCSCCCCSSCSCSHHHHHHHHHHTTTTTTHHHHHTTTTTSCSSSCSSSCCEEEES
T ss_pred EEeCCceEEEEEcCcEEEEEEEEEecCCCCCcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCccEEEEECC
Confidence 999999999999999999999999999999887 6775 3777789999999999999864 37999999999
Q ss_pred cccHHHHHH--HHHHHHHhcccchhhhccCcEEEEEcCCCcchhHHHHhcCchhHHhhhhhhHHHHHHHHHHHHHHhhcC
Q 024840 148 GFTKDQFHR--HLLLEAERRQLRPIIENKSRIILVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTND 225 (262)
Q Consensus 148 gf~k~~f~~--~l~~~~~~~~~~~~~~~~~ki~~~~~s~~~~~gl~Evl~~~~v~~~l~~~~~~~e~~~l~~f~~~l~~~ 225 (262)
||+|++|.+ +++.++.+ ..+.++++|+++++|++|+|++. +++|++.++++|.++|++|+++++++
T Consensus 230 g~~k~~f~~~~~l~~~L~~----------~vv~~v~~s~g~~~gl~E~l~~~--~~~l~~~k~~~e~~ll~~f~~~l~~d 297 (437)
T 1dt9_A 230 ADFKTELSQSDMFDQRLQS----------KVLKLVDISYGGENGFNQAIELS--TEVLSNVKFIQEKKLIGRYFDEISQD 297 (437)
T ss_dssp TTTTHHHHSCSSSCTTTTT----------TCCCEEECSSCTTHHHHHHHHHH--SSTTTSHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHhhccChhhHh----------cEEEEEecCCCccccHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 999999976 44333211 13357899999999999999984 99999999999999999999999999
Q ss_pred CCcEEECHHHHHHHHhccCccEEEEecCCc
Q 024840 226 PTRACYGPKHVEVAHERMAVQTLLITDDLF 255 (262)
Q Consensus 226 ~~~v~YG~~eV~~Ale~GAVe~LLVsd~l~ 255 (262)
++++|||+++|.+|+++|||++|||+|+++
T Consensus 298 ~g~a~yG~~eV~~Al~~GaVetLLv~d~l~ 327 (437)
T 1dt9_A 298 TGKYCFGVEDTLKALEMGAVEILIVYENLD 327 (437)
T ss_dssp SCCEEESHHHHHHHHHSSCCSEEEEESCCC
T ss_pred CCcEEecHHHHHHHHHhCCccEEEEecCcc
Confidence 999999999999999999999999999999
No 10
>3agk_A Peptide chain release factor subunit 1; translation; 2.10A {Aeropyrum pernix}
Probab=100.00 E-value=1e-42 Score=323.07 Aligned_cols=217 Identities=21% Similarity=0.277 Sum_probs=186.8
Q ss_pred EEEEecCccccCCcEEEEEEccCCceEEEEc-ccChhhHHHHHHhcCCCCCCcEEEEEEeCCeEEEEEEecceEEEEEEE
Q 024840 22 GKNILENEHVKIGAFHTLEIELHRAFVLRKD-LWDSLALDTLHQAADPTASADLAVVLMQEGLAHILLVGRSMTITRSRI 100 (262)
Q Consensus 22 G~i~~~~e~v~~G~~HT~~i~~~~~i~i~K~-~wd~~~le~L~~a~~~~~~~~~~~v~id~g~a~i~~l~~~~~~~~~~i 100 (262)
|.++.+.+....|+|||++++||.|+++.|+ +|++|++++|.+++++.. .+++|+||+++|.||+++++++.++.++
T Consensus 92 Gl~vf~~~~~~~~~~~t~~~~~~~p~~~~~~~~~~~f~l~~L~~~~~~~~--~~~vvvvd~~~A~i~~~~~~~~~~~~~i 169 (373)
T 3agk_A 92 GLVLFCGEDMSTGKFECFMFSPPEPIRVFYYRTDKRFITDFLEDMVEDNN--AIGIIIVERDQATIGLLKGARLEVLKEL 169 (373)
T ss_dssp CEEEEEEC-----CCEEEEEBCSSCCCSCEEEEESSCCCHHHHTTSSCSC--EEEEEEEETTEEEEEEEETTEEEEEEEE
T ss_pred EEEEEEecCCCCccEEEEEecCCCCceEEEEecCChhHHHHHHHHhcCCC--CEEEEEEeCCcEEEEEEeCcEEEEEEEE
Confidence 5555444332569999999999999999998 567899999999999964 9999999999999999999999999999
Q ss_pred EeeCCCCCCC-Ccch------hhHHHHHHHHHHHHHHHhccc----ccCccEEEEECCcccHHHHH--HHHHHHHHhccc
Q 024840 101 ETSIPRKHGP-AIAG------YESALNKFFENVLQAFLKHVD----FNVVRCAVIASPGFTKDQFH--RHLLLEAERRQL 167 (262)
Q Consensus 101 ~~~ip~K~~~-g~s~------~~~~~~~f~~~v~~~l~~~~~----~~~v~~iIIaGPgf~k~~f~--~~l~~~~~~~~~ 167 (262)
+.++|+||++ |+|+ +++.+++||++|++++.+++. +.++++||||||||+|++|. +||.+++.+
T Consensus 170 ~~~vp~K~~~gG~s~~rf~r~~e~~~~~f~~~V~~~l~~~~~~~~~~~~~~~lilaGp~~~k~~f~~~~~l~~~l~~--- 246 (373)
T 3agk_A 170 EGFVPGKHKMGGQSQRRYERIIEQMVDEFFKKVGEEASNLLVPLAEKGVLKGVIVAGPGLAKQEFVEGNYLDYRLKK--- 246 (373)
T ss_dssp ECCCC------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEESTTHHHHHHHSSCSCHHHHT---
T ss_pred EecCCCCCcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCcceEEEECChHHHHHhhhhhhcChHhhh---
Confidence 9999999987 5776 788899999999999999883 46899999999999999999 899987643
Q ss_pred chhhhccCcEE--EEEcCCCcchhHHHHhcCchhHHhhhhhhHHHHHHHHHHHHHHhhcCCCcEEECHHHHHHHHhccCc
Q 024840 168 RPIIENKSRII--LVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAV 245 (262)
Q Consensus 168 ~~~~~~~~ki~--~~~~s~~~~~gl~Evl~~~~v~~~l~~~~~~~e~~~l~~f~~~l~~~~~~v~YG~~eV~~Ale~GAV 245 (262)
+++ ++++|+++++|++|++++. .++|++.++++|.++|++|+++++++++++|||+++|.+|+++|||
T Consensus 247 --------~vi~~~v~~s~~~~~g~~E~l~~~--~~~l~~~~~~~e~~~l~~f~~~l~~~~g~a~yG~~eV~~Al~~GaV 316 (373)
T 3agk_A 247 --------ILAPELVDVAYQGLQGLKEAVMKA--EKVVEAQMYRDAVNAMEEFKLHLAKGTGMIVYGEKDVEAALEMGAV 316 (373)
T ss_dssp --------TBCSSCEECCCCHHHHHHHHHHHC--TTCGGGHHHHHHHHHHHHHHHHHHTTCCCEEESHHHHHHHHHTTCE
T ss_pred --------CceeEEEccCCCccccHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcCCCcEeeCHHHHHHHHHhCCc
Confidence 445 7899999999999999974 9999999999999999999999999999999999999999999999
Q ss_pred cEEEEecC
Q 024840 246 QTLLITDD 253 (262)
Q Consensus 246 e~LLVsd~ 253 (262)
++|||+|+
T Consensus 317 etLlv~d~ 324 (373)
T 3agk_A 317 KTLLIHES 324 (373)
T ss_dssp EEEEEETT
T ss_pred cEEEEeCC
Confidence 99999998
No 11
>3ir9_A Peptide chain release factor subunit 1; structural genomics, APC36528.1, C-terminal domain, PSI-2, protein structure initiative; 2.21A {Methanosarcina mazei}
Probab=99.79 E-value=1.4e-19 Score=149.64 Aligned_cols=74 Identities=26% Similarity=0.402 Sum_probs=71.4
Q ss_pred cCCCcchhHHHHhcCchhHHhhhhhhHHHHHHHHHHHHHHhhcCCCcEEECHHHHHHHHhccCccEEEEecCCccc
Q 024840 182 TSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDLFRL 257 (262)
Q Consensus 182 ~s~~~~~gl~Evl~~~~v~~~l~~~~~~~e~~~l~~f~~~l~~~~~~v~YG~~eV~~Ale~GAVe~LLVsd~l~r~ 257 (262)
.||+|++|++|+|++. +++|+++++++|.++|++||+++++|++++|||+++|++|++||||++|||+|+++++
T Consensus 2 ~sy~ge~Gl~E~i~~~--~~~L~~~k~~~Ekkli~~f~~~i~~d~g~~~yG~~ev~~Ale~GAVetLlv~e~l~~~ 75 (166)
T 3ir9_A 2 NAYTDESGLSELVNAA--GEKLQDLELMGQKNAVRDFFKELIADSGKVAYGESQVRANLEINSVDVLLLSEDLRAE 75 (166)
T ss_dssp -CCSCCSSHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTCTTCEEESHHHHHHHHTTTCEEEEEEETTCCCE
T ss_pred CCcccHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhCCCcEEEcHHHHHHHHHhCCceEEEEecCccce
Confidence 5899999999999986 9999999999999999999999999999999999999999999999999999999986
No 12
>1x52_A Pelota homolog, CGI-17; ERF1_3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.79.3.2
Probab=99.70 E-value=4.1e-18 Score=134.37 Aligned_cols=67 Identities=51% Similarity=0.720 Sum_probs=65.1
Q ss_pred HhcCchhHHhhhhhhHHHHHHHHHHHHHHhhcCCCcEEECHHHHHHHHhccCccEEEEecCCcccCC
Q 024840 193 VLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDLFRLVC 259 (262)
Q Consensus 193 vl~~~~v~~~l~~~~~~~e~~~l~~f~~~l~~~~~~v~YG~~eV~~Ale~GAVe~LLVsd~l~r~~d 259 (262)
+|++|+++++|+++++++|.++|++||+++++|++++|||+++|.+|+++|||+||||+|+++|++|
T Consensus 3 ~l~~~~v~~~l~~~k~~~E~~ll~~f~~~i~~d~g~~~yG~~eV~~Ale~GAVetLLI~d~l~r~~d 69 (124)
T 1x52_A 3 SGSSGTVASRLSDTKAAGEVKALDDFYKMLQHEPDRAFYGLKQVEKANEAMAIDTLLISDELFRHQD 69 (124)
T ss_dssp SCSSCCCCCCCCCHHHHHHHHHHHHHHHHHHSCGGGEEESHHHHHHHHHTTCEEEEEEEHHHHTCSS
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEECHHHHHHHHHcCCccEEEechhhhcCCC
Confidence 5899999999999999999999999999999999999999999999999999999999999999876
No 13
>1xbi_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich fold, RNA binding protein/structural protein complex; HET: EPE; 1.45A {Methanocaldococcus jannaschii} SCOP: d.79.3.1 PDB: 1ra4_A* 1sds_A 3paf_A
Probab=81.94 E-value=2.8 Score=31.75 Aligned_cols=40 Identities=20% Similarity=0.349 Sum_probs=34.9
Q ss_pred HHHHHHHHhhcCCCcEEECHHHHHHHHhccCccEEEEecCC
Q 024840 214 ALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDL 254 (262)
Q Consensus 214 ~l~~f~~~l~~~~~~v~YG~~eV~~Ale~GAVe~LLVsd~l 254 (262)
+-+++++.+..- +++..|.++|.+|++.|-+.-++|+.+.
T Consensus 16 l~~k~~~ll~~A-gkl~~G~~~v~kai~~gka~lViiA~D~ 55 (120)
T 1xbi_A 16 IQKELLDAVAKA-QKIKKGANEVTKAVERGIAKLVIIAEDV 55 (120)
T ss_dssp HHHHHHHHHHTC-SEEEESHHHHHHHHHHTCCSEEEEESCC
T ss_pred HHHHHHHHHHHc-CCccccHHHHHHHHHcCCceEEEEcCCC
Confidence 456777777776 8999999999999999999999999775
No 14
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=80.55 E-value=2.8 Score=30.45 Aligned_cols=35 Identities=3% Similarity=0.095 Sum_probs=29.1
Q ss_pred HHHHhhcCCCcEEECHHHHHHHHhccCccEEEEecC
Q 024840 218 FFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDD 253 (262)
Q Consensus 218 f~~~l~~~~~~v~YG~~eV~~Ale~GAVe~LLVsd~ 253 (262)
.+....+ .+++..|.++|.+|++.|-+.-++++.+
T Consensus 6 ~L~la~k-agk~v~G~~~v~kai~~gka~lViiA~D 40 (99)
T 3j21_Z 6 ELRKAME-TGKVVLGSNETIRLAKTGGAKLIIVAKN 40 (99)
T ss_dssp HHHHHHH-SSCEEESHHHHHHHHHHTCCSEEEEECC
T ss_pred HHHHHHH-hCCEeECHHHHHHHHHcCCccEEEEeCC
Confidence 3333333 3899999999999999999999999987
No 15
>2lbw_A H/ACA ribonucleoprotein complex subunit 2; L7AE, snoRNP, scaRNP, RNA binding protein; NMR {Saccharomyces cerevisiae} PDB: 2lbx_A
Probab=79.06 E-value=3.6 Score=31.15 Aligned_cols=31 Identities=19% Similarity=0.192 Sum_probs=27.9
Q ss_pred cCCCcEEECHHHHHHHHhccCccEEEEecCC
Q 024840 224 NDPTRACYGPKHVEVAHERMAVQTLLITDDL 254 (262)
Q Consensus 224 ~~~~~v~YG~~eV~~Ale~GAVe~LLVsd~l 254 (262)
...+++..|.++|.+|++.|-+.-++|+.+.
T Consensus 16 ~k~gkl~~G~~~v~kai~~gkakLViiA~D~ 46 (121)
T 2lbw_A 16 SKAKNVKRGVKEVVKALRKGEKGLVVIAGDI 46 (121)
T ss_dssp HTTTCEEESHHHHHHHHHHSCCCEEEECTTC
T ss_pred HHcCCccccHHHHHHHHHcCCceEEEEeCCC
Confidence 3558999999999999999999999999775
No 16
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding, K-turn RNA, hypothetical R protein, RNA binding protein; HET: CIT; 1.55A {Bacillus subtilis}
Probab=78.06 E-value=1.9 Score=31.53 Aligned_cols=32 Identities=19% Similarity=0.248 Sum_probs=28.2
Q ss_pred hcCCCcEEECHHHHHHHHhccCccEEEEecCC
Q 024840 223 TNDPTRACYGPKHVEVAHERMAVQTLLITDDL 254 (262)
Q Consensus 223 ~~~~~~v~YG~~eV~~Ale~GAVe~LLVsd~l 254 (262)
+...+++..|.++|.+|++.|-+.-++++.+.
T Consensus 14 a~kagk~v~G~~~v~kai~~gka~lViiA~D~ 45 (101)
T 3v7q_A 14 ANRARKVVSGEDLVIKEIRNARAKLVLLTEDA 45 (101)
T ss_dssp HHHTTCEEESHHHHHHHHHTTCCSEEEEETTS
T ss_pred hhhhhhcccchhhhHHHHhcCceeEEEEeccc
Confidence 33448999999999999999999999999875
No 17
>4a18_G RPL30; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_G 4a1b_G 4a1d_G 4adx_6
Probab=76.73 E-value=2.9 Score=30.75 Aligned_cols=29 Identities=17% Similarity=0.192 Sum_probs=26.8
Q ss_pred CCcEEECHHHHHHHHhccCccEEEEecCC
Q 024840 226 PTRACYGPKHVEVAHERMAVQTLLITDDL 254 (262)
Q Consensus 226 ~~~v~YG~~eV~~Ale~GAVe~LLVsd~l 254 (262)
.++++.|.++|.+|++.|-+.-++++.+.
T Consensus 20 agklv~G~~~v~kai~~gkaklViiA~D~ 48 (104)
T 4a18_G 20 SGKATLGYKSTIKAIRNGTAKLVFISNNC 48 (104)
T ss_dssp HSEEEESHHHHHHHHHHTCCCEEEECTTS
T ss_pred hCCEeECHHHHHHHHHcCCceEEEEeCCC
Confidence 38999999999999999999999999875
No 18
>1w41_A 50S ribosomal protein L30E; electrostatic interactions, thermostability, protein engineering; 1.7A {Thermococcus celer} SCOP: d.79.3.1 PDB: 3n4y_A 3lfo_A 1w40_A 1go0_A 1go1_A 1h7m_A 1w42_A 1w3e_X 3ra6_A 3ra5_A 3n4z_A 2bo1_A
Probab=75.89 E-value=3.4 Score=30.07 Aligned_cols=27 Identities=4% Similarity=0.133 Sum_probs=25.9
Q ss_pred CcEEECHHHHHHHHhccCccEEEEecC
Q 024840 227 TRACYGPKHVEVAHERMAVQTLLITDD 253 (262)
Q Consensus 227 ~~v~YG~~eV~~Ale~GAVe~LLVsd~ 253 (262)
+++..|.++|.+|++.|-+.-++++.+
T Consensus 15 gkl~~G~~~v~kai~~gka~lViiA~D 41 (101)
T 1w41_A 15 GKIVMGARKSIQYAKMGGAKLIIVARN 41 (101)
T ss_dssp SEEEESHHHHHHHHHHTCCSEEEEETT
T ss_pred CCEeECHHHHHHHHHcCCCcEEEEeCC
Confidence 899999999999999999999999987
No 19
>3on1_A BH2414 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; HET: MSE; 1.65A {Bacillus halodurans}
Probab=75.89 E-value=5 Score=29.16 Aligned_cols=31 Identities=16% Similarity=0.200 Sum_probs=27.8
Q ss_pred cCCCcEEECHHHHHHHHhccCccEEEEecCC
Q 024840 224 NDPTRACYGPKHVEVAHERMAVQTLLITDDL 254 (262)
Q Consensus 224 ~~~~~v~YG~~eV~~Ale~GAVe~LLVsd~l 254 (262)
...++++.|.++|.+|++.|-+.-++++.+.
T Consensus 14 ~kagk~v~G~~~v~kai~~gka~lViiA~D~ 44 (101)
T 3on1_A 14 ARARQLLTGEEQVVKAVQNGQVTLVILSSDA 44 (101)
T ss_dssp HHTTCEEESHHHHHHHHHTTCCSEEEEETTS
T ss_pred HHHCCEeECHHHHHHHHHcCCCcEEEEeCCC
Confidence 3448999999999999999999999999875
No 20
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=75.64 E-value=3.8 Score=28.76 Aligned_cols=28 Identities=21% Similarity=0.298 Sum_probs=26.4
Q ss_pred CcEEECHHHHHHHHhccCccEEEEecCC
Q 024840 227 TRACYGPKHVEVAHERMAVQTLLITDDL 254 (262)
Q Consensus 227 ~~v~YG~~eV~~Ale~GAVe~LLVsd~l 254 (262)
+++..|.++|.+|++.|-+.-++|+.|.
T Consensus 10 gk~~~G~~~v~kai~~gkaklViiA~D~ 37 (82)
T 3v7e_A 10 KSIIIGTKQTVKALKRGSVKEVVVAKDA 37 (82)
T ss_dssp SEEEESHHHHHHHHTTTCEEEEEEETTS
T ss_pred CCeeEcHHHHHHHHHcCCeeEEEEeCCC
Confidence 8999999999999999999999998875
No 21
>3u5e_c L32, RP73, YL38, 60S ribosomal protein L30; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_f 3izs_f 3o58_Z 3o5h_Z 1t0k_B 3u5i_c 4b6a_c 1ck2_A 1cn7_A 1nmu_B* 3jyw_2
Probab=74.89 E-value=5.3 Score=29.34 Aligned_cols=31 Identities=10% Similarity=0.079 Sum_probs=28.1
Q ss_pred cCCCcEEECHHHHHHHHhccCccEEEEecCC
Q 024840 224 NDPTRACYGPKHVEVAHERMAVQTLLITDDL 254 (262)
Q Consensus 224 ~~~~~v~YG~~eV~~Ale~GAVe~LLVsd~l 254 (262)
...++++.|.++|.+|++.|-+.-+++..+.
T Consensus 18 ~kagk~v~G~~~v~kai~~gkaklVilA~D~ 48 (105)
T 3u5e_c 18 IKSGKYTLGYKSTVKSLRQGKSKLIIIAANT 48 (105)
T ss_dssp HTTSEEEESHHHHHHHHHTTCCSEEEECTTS
T ss_pred HHhCCeeECHHHHHHHHHcCCceEEEEeCCC
Confidence 3458999999999999999999999999875
No 22
>3iz5_f 60S ribosomal protein L30 (L30E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_f
Probab=73.80 E-value=5.9 Score=29.61 Aligned_cols=31 Identities=10% Similarity=0.088 Sum_probs=28.0
Q ss_pred cCCCcEEECHHHHHHHHhccCccEEEEecCC
Q 024840 224 NDPTRACYGPKHVEVAHERMAVQTLLITDDL 254 (262)
Q Consensus 224 ~~~~~v~YG~~eV~~Ale~GAVe~LLVsd~l 254 (262)
...+++..|.++|.+|++.|-+.-++|+.+.
T Consensus 22 ~kagk~~~G~~~t~kai~~gkakLVilA~D~ 52 (112)
T 3iz5_f 22 MKSGKYTLGYKTVLKTLRSSLGKLIILANNC 52 (112)
T ss_dssp HTTCEEEESHHHHHHHHHTTCCSEEEECSCC
T ss_pred HHhCCeeECHHHHHHHHHcCCceEEEEeCCC
Confidence 3448999999999999999999999999875
No 23
>1vq8_F 50S ribosomal protein L7AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.79.3.1 PDB: 1vq4_F* 1vq5_F* 1vq6_F* 1vq7_F* 1s72_F* 1vq9_F* 1vqk_F* 1vql_F* 1vqm_F* 1vqn_F* 1vqo_F* 1vqp_F* 1yhq_F* 1yi2_F* 1yij_F* 1yit_F* 1yj9_F* 1yjn_F* 1yjw_F* 2otj_F* ...
Probab=73.06 E-value=7 Score=29.36 Aligned_cols=29 Identities=14% Similarity=0.251 Sum_probs=26.8
Q ss_pred CCcEEECHHHHHHHHhccCccEEEEecCC
Q 024840 226 PTRACYGPKHVEVAHERMAVQTLLITDDL 254 (262)
Q Consensus 226 ~~~v~YG~~eV~~Ale~GAVe~LLVsd~l 254 (262)
.+++..|.++|.+|++.|-+.-++++.+.
T Consensus 27 ag~l~~G~~~v~kal~~gka~lViiA~D~ 55 (120)
T 1vq8_F 27 TGAVKKGTNETTKSIERGSAELVFVAEDV 55 (120)
T ss_dssp SSCEEESHHHHHHHHHHTCCSEEEEESCC
T ss_pred cCCEeECHHHHHHHHHcCCceEEEEeCCC
Confidence 38999999999999999999999999775
No 24
>3cpq_A 50S ribosomal protein L30E; RNA-protein, elongation factor, ribonucleoprotein, structural genomics, NPPSFA; 1.90A {Methanocaldococcus jannaschii}
Probab=70.98 E-value=5 Score=29.71 Aligned_cols=28 Identities=7% Similarity=0.121 Sum_probs=26.6
Q ss_pred CcEEECHHHHHHHHhccCccEEEEecCC
Q 024840 227 TRACYGPKHVEVAHERMAVQTLLITDDL 254 (262)
Q Consensus 227 ~~v~YG~~eV~~Ale~GAVe~LLVsd~l 254 (262)
+++..|.++|.+|++.|-+.-++++.+.
T Consensus 20 gkl~~G~~~v~kai~~gka~lViiA~D~ 47 (110)
T 3cpq_A 20 GKVILGSKRTIKFVKHGEGKLVVLAGNI 47 (110)
T ss_dssp SEEEESHHHHHHHHHTTCCSEEEECTTC
T ss_pred CCeeeCHHHHHHHHHcCCceEEEEeCCC
Confidence 8999999999999999999999999876
No 25
>2aif_A Ribosomal protein L7A; high-mobility like protein, transcription factor, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum} SCOP: d.79.3.1
Probab=70.44 E-value=8.8 Score=29.55 Aligned_cols=37 Identities=16% Similarity=0.193 Sum_probs=30.1
Q ss_pred HHHHHhhcCCCcEEECHHHHHHHHhccCccEEEEecCC
Q 024840 217 DFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDL 254 (262)
Q Consensus 217 ~f~~~l~~~~~~v~YG~~eV~~Ale~GAVe~LLVsd~l 254 (262)
+++....+. +++..|.++|.+|++.|-+.-++++.+.
T Consensus 31 ~~L~lA~ka-gklv~G~~~v~kal~~gkaklViiA~D~ 67 (135)
T 2aif_A 31 NLVQQACNY-KQLRKGANEATKALNRGIAEIVLLAADA 67 (135)
T ss_dssp HHHHHHHHT-TCEEESHHHHHHHHHTTCEEEEEEETTC
T ss_pred HHHHHHHHc-CCcccCHHHHHHHHHcCCCeEEEEecCC
Confidence 444444443 8999999999999999999999998764
No 26
>2fc3_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich, ribosome, RNA binding protein; 1.56A {Aeropyrum pernix} SCOP: d.79.3.1 PDB: 3pla_C* 3id5_C* 3hax_D* 2hvy_D* 3hay_D* 3nvi_B 3nmu_C 3nvk_E* 3lwr_C 3lwo_C* 3lwq_C* 3lwp_C 3lwv_C 3hjw_C* 2czw_A 1pxw_A
Probab=69.32 E-value=7.4 Score=29.41 Aligned_cols=28 Identities=25% Similarity=0.307 Sum_probs=26.4
Q ss_pred CcEEECHHHHHHHHhccCccEEEEecCC
Q 024840 227 TRACYGPKHVEVAHERMAVQTLLITDDL 254 (262)
Q Consensus 227 ~~v~YG~~eV~~Ale~GAVe~LLVsd~l 254 (262)
+++..|.++|.+|++.|-+.-++++.+.
T Consensus 27 gkl~~G~~~v~kal~~gka~lViiA~D~ 54 (124)
T 2fc3_A 27 GRIKKGTNETTKAVERGLAKLVVIAEDV 54 (124)
T ss_dssp SEEEESHHHHHHHHHTTCCSEEEEETTC
T ss_pred CCccCCHHHHHHHHHcCCceEEEEcCCC
Confidence 7999999999999999999999999875
No 27
>2ale_A SNU13, NHP2/L7AE family protein YEL026W; splicing, RNA, yeast, His-TAG, RNA binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: d.79.3.1 PDB: 1zwz_A 2ozb_A 3siu_A 3siv_A 1e7k_A
Probab=68.79 E-value=9.5 Score=29.40 Aligned_cols=36 Identities=8% Similarity=0.103 Sum_probs=29.5
Q ss_pred HHHHhhcCCCcEEECHHHHHHHHhccCccEEEEecCC
Q 024840 218 FFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDL 254 (262)
Q Consensus 218 f~~~l~~~~~~v~YG~~eV~~Ale~GAVe~LLVsd~l 254 (262)
++.... ..+++..|.++|.+|++.|-+.-++|+.+.
T Consensus 23 ~L~lA~-k~gkl~~G~~~v~kai~~gkakLViiA~D~ 58 (134)
T 2ale_A 23 VVQQAA-NLRQLKKGANEATKTLNRGISEFIIMAADC 58 (134)
T ss_dssp HHHHHH-HTTCEEESHHHHHHHHHHTCEEEEEEETTC
T ss_pred HHHHHH-HcCCcccCchHHHHHHHhCCCeEEEEeCCC
Confidence 333333 348999999999999999999999999775
No 28
>1rlg_A 50S ribosomal protein L7AE; protein-RNA, structural protein/RNA complex; HET: 5BU; 2.70A {Archaeoglobus fulgidus} SCOP: d.79.3.1
Probab=68.47 E-value=7.7 Score=29.07 Aligned_cols=28 Identities=21% Similarity=0.273 Sum_probs=26.4
Q ss_pred CcEEECHHHHHHHHhccCccEEEEecCC
Q 024840 227 TRACYGPKHVEVAHERMAVQTLLITDDL 254 (262)
Q Consensus 227 ~~v~YG~~eV~~Ale~GAVe~LLVsd~l 254 (262)
+++..|.++|.+|++.|-+.-++++.+.
T Consensus 26 g~l~~G~~~v~kal~~gka~lViiA~D~ 53 (119)
T 1rlg_A 26 GKVKKGTNETTKAVERGLAKLVYIAEDV 53 (119)
T ss_dssp SEEEESHHHHHHHHTTTCCSEEEEESCC
T ss_pred CCeeECHHHHHHHHHcCCCcEEEEeCCC
Confidence 7999999999999999999999999775
No 29
>3vi6_A 60S ribosomal protein L30; three-layer alpha/beta/ALPA; 1.59A {Homo sapiens} PDB: 2zkr_6 1ysh_C
Probab=67.66 E-value=4.8 Score=30.74 Aligned_cols=29 Identities=7% Similarity=0.111 Sum_probs=26.8
Q ss_pred CCcEEECHHHHHHHHhccCccEEEEecCC
Q 024840 226 PTRACYGPKHVEVAHERMAVQTLLITDDL 254 (262)
Q Consensus 226 ~~~v~YG~~eV~~Ale~GAVe~LLVsd~l 254 (262)
.+++..|.++|.+|++.|-+.-++|+.+.
T Consensus 25 aGklv~G~~~v~kaIr~gkakLVIiA~Da 53 (125)
T 3vi6_A 25 SGKYVLGYKQTLKMIRQGKAKLVILANNC 53 (125)
T ss_dssp HSEEEESHHHHHHHHHTTCCSEEEECTTS
T ss_pred hCCeeeCHHHHHHHHHcCCceEEEEeCCC
Confidence 38999999999999999999999999875
No 30
>3gdz_A Arginyl-tRNA synthetase; klebsiella pneumoniae subsp. pneumo 78578, structural genomics, PSI-2; HET: MSE; 2.20A {Klebsiella pneumoniae subsp}
Probab=67.43 E-value=4.1 Score=30.19 Aligned_cols=28 Identities=29% Similarity=0.589 Sum_probs=20.1
Q ss_pred HHHHHHHHhcccc-cCccEEEEECCcccH
Q 024840 124 ENVLQAFLKHVDF-NVVRCAVIASPGFTK 151 (262)
Q Consensus 124 ~~v~~~l~~~~~~-~~v~~iIIaGPgf~k 151 (262)
.+|++.+...+.. .-+..+-++||||+.
T Consensus 59 ~~iA~~i~~~l~~~~~i~~vevagpGFIN 87 (109)
T 3gdz_A 59 RQLAEQVLSHLDLNGIANKVEIAGPGFIN 87 (109)
T ss_dssp HHHHHHHHHHCCCTTTEEEEEEETTTEEE
T ss_pred HHHHHHHHHhcCcCCcEeEEEEeCCCeEE
Confidence 3677777766653 237889999999864
No 31
>3o85_A Ribosomal protein L7AE; alpha beta sandwich fold, K-turn RNA binding protein, KINK T ribosomal protein; 1.81A {Giardia lamblia}
Probab=66.98 E-value=12 Score=28.21 Aligned_cols=29 Identities=14% Similarity=0.092 Sum_probs=27.0
Q ss_pred CCcEEECHHHHHHHHhccCccEEEEecCC
Q 024840 226 PTRACYGPKHVEVAHERMAVQTLLITDDL 254 (262)
Q Consensus 226 ~~~v~YG~~eV~~Ale~GAVe~LLVsd~l 254 (262)
.+++..|.++|.+|++.|-+.-++++.+.
T Consensus 29 agklv~G~~~v~kai~~gka~lViiA~D~ 57 (122)
T 3o85_A 29 LQAIKRGANEALKQVNRGKAELVIIAADA 57 (122)
T ss_dssp TTCEEESHHHHHHHHHTTCCSEEEEETTC
T ss_pred hCCEeEcHHHHHHHHHcCCceEEEEeCCC
Confidence 48999999999999999999999999776
No 32
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U
Probab=60.28 E-value=12 Score=28.44 Aligned_cols=29 Identities=14% Similarity=0.075 Sum_probs=26.6
Q ss_pred CCcEEECHHHHHHHHhccCccEEEEecCC
Q 024840 226 PTRACYGPKHVEVAHERMAVQTLLITDDL 254 (262)
Q Consensus 226 ~~~v~YG~~eV~~Ale~GAVe~LLVsd~l 254 (262)
.++...|.++|.+|++.|-+.-++|..+.
T Consensus 22 ~gkl~~G~~~v~Kai~~gka~LViiA~D~ 50 (126)
T 2xzm_U 22 QDAISKGLHEVLRTIEAKQALFVCVAEDC 50 (126)
T ss_dssp SSCEEESHHHHHHHHHHTCCSEEEEESSC
T ss_pred cCCEeecHHHHHHHHHcCCceEEEEeCCC
Confidence 37899999999999999999999999765
No 33
>2jnb_A NHP2-like protein 1; splicing, KINK-turn RNA-binding protein, NHPX, RNA binding protein; NMR {Homo sapiens} SCOP: d.79.3.1
Probab=54.71 E-value=14 Score=28.78 Aligned_cols=30 Identities=10% Similarity=0.124 Sum_probs=27.3
Q ss_pred CCCcEEECHHHHHHHHhccCccEEEEecCC
Q 024840 225 DPTRACYGPKHVEVAHERMAVQTLLITDDL 254 (262)
Q Consensus 225 ~~~~v~YG~~eV~~Ale~GAVe~LLVsd~l 254 (262)
..+++..|.++|.+|++.|-+.-++|+.+.
T Consensus 47 kagkl~~G~kev~KaI~~gkakLVIIA~D~ 76 (144)
T 2jnb_A 47 NYKQLRKGANEATKTLNRGISEFIVMAADA 76 (144)
T ss_dssp HTTCCCBCHHHHHHHHHHTCEEEEEEETTC
T ss_pred HcCCccccHHHHHHHHHhCCCeEEEEeCCC
Confidence 448999999999999999999999999775
No 34
>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A
Probab=48.23 E-value=32 Score=30.70 Aligned_cols=91 Identities=13% Similarity=0.169 Sum_probs=47.7
Q ss_pred ccCccEEEEECCcc--------cHHHHHHHHHHHHHhcccchhhhccCcEEEE----EcCCCcchhHHHHhcCchhHHhh
Q 024840 136 FNVVRCAVIASPGF--------TKDQFHRHLLLEAERRQLRPIIENKSRIILV----HTSSGYKHSLREVLDAPNVMNMI 203 (262)
Q Consensus 136 ~~~v~~iIIaGPgf--------~k~~f~~~l~~~~~~~~~~~~~~~~~ki~~~----~~s~~~~~gl~Evl~~~~v~~~l 203 (262)
-..++.||+.||-- +++.+.++|..+... +|.+. +.+.+.+..++-..++..+.+-+
T Consensus 139 vp~~RPvvlvGP~~~g~~~td~m~~~l~d~l~~~F~~-----------~i~~tR~~~d~~~~~r~~~~~~~~~~~~e~~~ 207 (337)
T 4dey_A 139 VPSMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEG-----------RISITRVTADISLAKRSVLNNPSKHAIIERSN 207 (337)
T ss_dssp ECSSCCEEEECSSCTTSHHHHHHHHHHHHHHHHHTTT-----------SEEEEEECSCGGGC------------------
T ss_pred cCCCCceEEECCccccchhHHHHHHHHHHhhHHhcCC-----------ccceEeecchhhhcchhhhhcccchhhhcccc
Confidence 34678899999986 466777777777543 43222 45566666666677777777777
Q ss_pred hhhhHHHHHHHHHHHHHHhhcCCCcEEE-------CHHHHHHH
Q 024840 204 KDTKAAQEVQALKDFFNMLTNDPTRACY-------GPKHVEVA 239 (262)
Q Consensus 204 ~~~~~~~e~~~l~~f~~~l~~~~~~v~Y-------G~~eV~~A 239 (262)
....+.+-...+++.++...++ +.|. |...|+++
T Consensus 208 ~~~~~~ev~seVe~i~~v~~~G--k~vILDIDvQnGa~qlk~~ 248 (337)
T 4dey_A 208 TRSSLAEVQSEIERIFELARTL--QLVVLDADTINHPAQLSKT 248 (337)
T ss_dssp -CCCHHHHHHHHHHHHHHTTTC--CEEEEEETTCCSGGGTTTS
T ss_pred cccchHHHHhHHHHHHHHHhCC--CEEEEEeCcHHHHHHHHhc
Confidence 7777777667888888877654 4442 66666554
No 35
>3u5c_M 40S ribosomal protein S12, 40S ribosomal protein S11-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_M
Probab=41.06 E-value=34 Score=26.70 Aligned_cols=39 Identities=13% Similarity=0.095 Sum_probs=30.4
Q ss_pred HHHHHHHhhcCCCcEEECHHHHHHHHhccCccEEEEecCC
Q 024840 215 LKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDL 254 (262)
Q Consensus 215 l~~f~~~l~~~~~~v~YG~~eV~~Ale~GAVe~LLVsd~l 254 (262)
|.+.++.-... +.+.-|..++.+|++.|-+.-+++.++.
T Consensus 28 L~~vLk~A~~~-g~l~~G~~et~Kal~kg~a~LvvLA~D~ 66 (143)
T 3u5c_M 28 LKVVLRTALVH-DGLARGLRESTKALTRGEALLVVLVSSV 66 (143)
T ss_dssp HHHHHHHHHHT-TCEEESHHHHHHHHSSTTCSCEECCSCC
T ss_pred HHHHHHHHHHc-CCEeEcHHHHHHHHhcCceeEEEEeCCC
Confidence 33444443444 7899999999999999999999998764
No 36
>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Probab=39.94 E-value=28 Score=30.13 Aligned_cols=22 Identities=36% Similarity=0.445 Sum_probs=17.6
Q ss_pred ccEEEEECCcccHHHHHHHHHHHH
Q 024840 139 VRCAVIASPGFTKDQFHRHLLLEA 162 (262)
Q Consensus 139 v~~iIIaGPgf~k~~f~~~l~~~~ 162 (262)
.+.|||.||| |+.+.+.|.+..
T Consensus 105 ~r~ivl~GPg--K~tl~~~L~~~~ 126 (295)
T 1kjw_A 105 ARPIIILGPT--KDRANDDLLSEF 126 (295)
T ss_dssp CCCEEEESTT--HHHHHHHHHHHC
T ss_pred CCEEEEECCC--HHHHHHHHHhhC
Confidence 3679999998 888888777654
No 37
>3r8e_A Hypothetical sugar kinase; ribonuclease H-like motif, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.65A {Cytophaga hutchinsonii}
Probab=35.40 E-value=1e+02 Score=26.45 Aligned_cols=69 Identities=7% Similarity=-0.045 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHhcccccCccEEEEECCcccH-HHHHHHHHHHHHhcccchhhhccCcEEEEEcCCCcchhH
Q 024840 119 LNKFFENVLQAFLKHVDFNVVRCAVIASPGFTK-DQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKHSL 190 (262)
Q Consensus 119 ~~~f~~~v~~~l~~~~~~~~v~~iIIaGPgf~k-~~f~~~l~~~~~~~~~~~~~~~~~ki~~~~~s~~~~~gl 190 (262)
+++|...++..+....+..+++.|||+|.-.-. +.|.+.+.+.+.+....... .++.+..+..+..+++
T Consensus 241 ~~~~~~~La~~i~~l~~~ldP~~IvlgG~i~~~~~~l~~~l~~~l~~~~~~~~~---~~~~i~~s~l~~~a~~ 310 (321)
T 3r8e_A 241 WADIGTIIGESLVNIVRVMDLNNILLGGGISGAFDYFVPNLKKAMLEHLPTYYT---DDMYIGKATLENDAGL 310 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCEEEEESGGGGGHHHHHHHHHHHHHHHSCHHHH---TTCEEEECSSGGGHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEEeChhcccchHHHHHHHHHHHHhcccccC---CCCEEEEcCCCCcHHH
Confidence 455555666666666666678999999987643 55667776666553322111 2233445555555554
No 38
>4htl_A Beta-glucoside kinase; structural genomics, sugar kinase, ROK family, PSI-biology, center for structural genomics, MCSG, transferase; HET: MSE; 1.64A {Listeria monocytogenes}
Probab=30.45 E-value=80 Score=26.80 Aligned_cols=66 Identities=12% Similarity=0.131 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHhcccccCccEEEEECCcccHHHHHHHHHHHHHhcccchhhhccCcEEEEEcCCCcchhHH
Q 024840 119 LNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKHSLR 191 (262)
Q Consensus 119 ~~~f~~~v~~~l~~~~~~~~v~~iIIaGPgf~k~~f~~~l~~~~~~~~~~~~~~~~~ki~~~~~s~~~~~gl~ 191 (262)
+++|...++..+....+..+++.|||+|.=...+.|.+.+.+....... ..+.+..+..+..+++.
T Consensus 218 ~~~~~~~La~~i~~l~~~~~p~~IvlgGgi~~~~~~~~~l~~~l~~~~~-------~~~~i~~s~lg~~a~~~ 283 (297)
T 4htl_A 218 ITEFYTGICTGLYNLIYLFDPTHIFIGGGITSRPTFIAELKHHMESFGL-------RDTIIETATHKNQAGLL 283 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCSEEEEESGGGGSTTHHHHHHHHHTTTCC-------TTCEEEECSCTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEeCcccccHHHHHHHHHHHHHhcc-------CCCeEEECCcCChHHHH
Confidence 3444455555555555556788999999655445566666666543211 12334556666666554
No 39
>2zkr_f 60S ribosomal protein L7A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=30.39 E-value=34 Score=29.54 Aligned_cols=31 Identities=23% Similarity=0.267 Sum_probs=28.2
Q ss_pred cCCCcEEECHHHHHHHHhccCccEEEEecCC
Q 024840 224 NDPTRACYGPKHVEVAHERMAVQTLLITDDL 254 (262)
Q Consensus 224 ~~~~~v~YG~~eV~~Ale~GAVe~LLVsd~l 254 (262)
+.++.+..|.++|.+|++.|-+.-++|+.+.
T Consensus 131 k~~~~L~~G~keV~KaIekgkAkLVIIA~Da 161 (266)
T 2zkr_f 131 KRPPVLRAGVNTVTTLVENKKAQLVVIAHDV 161 (266)
T ss_dssp SSCCCCCBSHHHHHHHHHTTCCSEEEEESCC
T ss_pred CCCCeeeeChHHHHHHHHhCCceEEEEecCC
Confidence 4568899999999999999999999999875
No 40
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=29.93 E-value=21 Score=24.14 Aligned_cols=26 Identities=15% Similarity=0.263 Sum_probs=18.9
Q ss_pred cCCCCeEEEEEEEEecCccccCCcEE
Q 024840 12 DKEGSVLRIRGKNILENEHVKIGAFH 37 (262)
Q Consensus 12 ~~~~~~Lri~G~i~~~~e~v~~G~~H 37 (262)
+|.+++-||+|.|++.-+.+.+..||
T Consensus 38 ~PTGGKA~l~~~i~e~le~~~~~~~~ 63 (66)
T 1qxf_A 38 EPTGGKGNIKAEIIEYVDQIELEHHH 63 (66)
T ss_dssp ECCSSSCEECSEEEECCSCCC-----
T ss_pred ecCCcceeeehhHHhhhhheeeeecc
Confidence 58899999999999998877775444
No 41
>3htv_A D-allose kinase, allokinase; NP_418508.1, structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; HET: MSE; 1.95A {Escherichia coli k-12}
Probab=28.55 E-value=93 Score=26.65 Aligned_cols=69 Identities=12% Similarity=0.171 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHhcccccCccEEEEECCc-----ccHHHHHHHHHHHHHhcccchhhhccCcEEEEEcCCCcchhHH
Q 024840 117 SALNKFFENVLQAFLKHVDFNVVRCAVIASPG-----FTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKHSLR 191 (262)
Q Consensus 117 ~~~~~f~~~v~~~l~~~~~~~~v~~iIIaGPg-----f~k~~f~~~l~~~~~~~~~~~~~~~~~ki~~~~~s~~~~~gl~ 191 (262)
....+++++++..+....+..+++.|||+|.- ++.+.+.+.+.+.. .... ...++.+..++.+..+|+.
T Consensus 218 ~~~~~~~~~~a~~la~l~~~~dP~~IvlgG~v~~~~~~~~~~l~~~l~~~~----~~~~--~~~~~~i~~s~lg~~ag~~ 291 (310)
T 3htv_A 218 PFVQSLLENAARAIATSINLFDPDAVILGGGVMDMPAFPRETLVAMTQKYL----RRPL--PHQVVRFIAASSSDFNGAQ 291 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCSEEEEECTTTTSTTCCHHHHHHHHHHTS----CTTT--TTTTCEEEECCCCTTHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhhCCCEEEEeCchhccchhHHHHHHHHHHHHh----hccc--ccCCcEEEEcCCCCcHHHH
Confidence 34566777777777776676789999999953 33444554444432 1111 1123445566666666543
No 42
>3jyw_G 60S ribosomal protein L8(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_G
Probab=27.97 E-value=44 Score=24.86 Aligned_cols=32 Identities=28% Similarity=0.440 Sum_probs=28.5
Q ss_pred hcCCCcEEECHHHHHHHHhccCccEEEEecCC
Q 024840 223 TNDPTRACYGPKHVEVAHERMAVQTLLITDDL 254 (262)
Q Consensus 223 ~~~~~~v~YG~~eV~~Ale~GAVe~LLVsd~l 254 (262)
.+.|.....|.++|.+|++.|-+.-++|..+.
T Consensus 20 ~~~~~~l~~G~~~v~kaI~~gka~LVvIA~D~ 51 (113)
T 3jyw_G 20 SPKPYAVKYGLNHVVALIENKKAKLVLIANDV 51 (113)
T ss_dssp SSSSSCEEESHHHHHHTTTTTCCSEEEECSCC
T ss_pred CCCCchhhchHHHHHHHHHcCCceEEEEeCCC
Confidence 46677899999999999999999999998765
No 43
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*
Probab=27.80 E-value=25 Score=30.56 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=18.4
Q ss_pred CccEEEEECCcccHHHHHHHHHHHHH
Q 024840 138 VVRCAVIASPGFTKDQFHRHLLLEAE 163 (262)
Q Consensus 138 ~v~~iIIaGPgf~k~~f~~~l~~~~~ 163 (262)
..+.|||.||| |..+.+.|..+.+
T Consensus 99 ~~RpvVl~Gp~--K~tl~~~Ll~~~p 122 (292)
T 3tvt_A 99 YTRPVIILGPL--KDRINDDLISEYP 122 (292)
T ss_dssp SCCCEEEESTT--HHHHHHHHHHHCT
T ss_pred CCCeEEEeCCC--HHHHHHHHHHhCh
Confidence 45789999999 8888777666643
No 44
>3vgl_A Glucokinase; ROK family, transferase; HET: BGC ANP; 1.55A {Streptomyces griseus} PDB: 3vgk_A* 3vgm_A*
Probab=27.43 E-value=1.8e+02 Score=24.75 Aligned_cols=70 Identities=6% Similarity=-0.024 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHhcccccCccEEEEECCcccH-HHHHHHHHHHHHhccc-chhhhccCcEEEEEcCCCcchhHH
Q 024840 119 LNKFFENVLQAFLKHVDFNVVRCAVIASPGFTK-DQFHRHLLLEAERRQL-RPIIENKSRIILVHTSSGYKHSLR 191 (262)
Q Consensus 119 ~~~f~~~v~~~l~~~~~~~~v~~iIIaGPgf~k-~~f~~~l~~~~~~~~~-~~~~~~~~ki~~~~~s~~~~~gl~ 191 (262)
+++|...++..+....+..+++.|||+|.-... +.|.+.+.+...+... ... ..++.+..+..+..+++.
T Consensus 233 ~~~~~~~La~~i~~l~~~l~p~~IvlgGgi~~~~~~l~~~l~~~l~~~~~~~~~---~~~~~i~~s~l~~~a~l~ 304 (321)
T 3vgl_A 233 FRELARWAGAGLADLASLFDPSAFIVGGGVSDEGELVLDPIRKSFRRWLIGGEW---RPHAQVLAAQLGGKAGLV 304 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCSEEEEESGGGGGTHHHHHHHHHHHHHHCTTGGG---SCCCEEEECTTGGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEeChhhcchHHHHHHHHHHHHHhcccccc---cCCCEEEECCCCCcHHHH
Confidence 455666666666666666678899999965443 3445556655544322 111 123344555556665543
No 45
>3mcp_A Glucokinase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, transferase; 3.00A {Parabacteroides distasonis}
Probab=27.19 E-value=1.1e+02 Score=27.34 Aligned_cols=48 Identities=15% Similarity=-0.033 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHhcccccCccEEEEECCccc-HHHHHHHHHHHHHhccc
Q 024840 119 LNKFFENVLQAFLKHVDFNVVRCAVIASPGFT-KDQFHRHLLLEAERRQL 167 (262)
Q Consensus 119 ~~~f~~~v~~~l~~~~~~~~v~~iIIaGPgf~-k~~f~~~l~~~~~~~~~ 167 (262)
+++|...++..+....+..++ .|||+|.-.- .+.|.+.+.+.+.+..+
T Consensus 240 l~~~~~~Lg~~i~nl~~~ldP-~IviGGgi~~~~~~~~~~l~~~l~~~~~ 288 (366)
T 3mcp_A 240 FEELGEMAGDALASAITLIDG-LIVIGGGLSGASKYILPVLLKEMNAQTG 288 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHHCS-EEEEESGGGGGHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHCC-EEEEEChhhhchHHHHHHHHHHHHHhcc
Confidence 345555555555555555678 9999987554 35666777776665433
No 46
>2gup_A ROK family protein; sugar kinase, streptococcus pneumoniae TIGR4, AP sucrose, structural genomics, PSI; HET: SUC; 2.01A {Streptococcus pneumoniae} SCOP: c.55.1.10 c.55.1.10
Probab=27.18 E-value=83 Score=26.37 Aligned_cols=46 Identities=11% Similarity=0.065 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHhcccccCccEEEEECCcccHHHHHHHHHHHHHh
Q 024840 119 LNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAER 164 (262)
Q Consensus 119 ~~~f~~~v~~~l~~~~~~~~v~~iIIaGPgf~k~~f~~~l~~~~~~ 164 (262)
++++.+.++..+....+..+++.|||+|.-...+.|.+.+.+...+
T Consensus 208 ~~~~~~~L~~~i~~l~~~l~p~~IvlgG~i~~~~~~~~~l~~~l~~ 253 (292)
T 2gup_A 208 IERMNRNLAQGLLNIQYLIDPGVISLGGSISQNPDFIQGVKKAVED 253 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCSEEEEESGGGGCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEeCccccchHHHHHHHHHHHH
Confidence 3445555555555555555788999999875445666666555543
No 47
>1ipa_A RRMH, RNA 2'-O-ribose methyltransferase; DEEP trefoil knot, rossmann fold, EL30-like fold, riken structural genomics/proteomics initiative; 2.40A {Thermus thermophilus} SCOP: c.116.1.1 d.79.3.3
Probab=25.55 E-value=61 Score=27.75 Aligned_cols=29 Identities=14% Similarity=0.125 Sum_probs=25.4
Q ss_pred CcEEECHHHHHHHHhcc-CccEEEEecCCc
Q 024840 227 TRACYGPKHVEVAHERM-AVQTLLITDDLF 255 (262)
Q Consensus 227 ~~v~YG~~eV~~Ale~G-AVe~LLVsd~l~ 255 (262)
--.+||...|.+|++.| .++.|+++++..
T Consensus 28 ~f~veG~~~v~eal~~~~~i~~l~~~~~~~ 57 (274)
T 1ipa_A 28 RFLIEGAREIERALQAGIELEQALVWEGGL 57 (274)
T ss_dssp EEEEESHHHHHHHHHTTCCEEEEEEETTCC
T ss_pred eEEEEeHHHHHHHHhCCCCeEEEEEEcCcc
Confidence 46789999999999988 699999998754
No 48
>1x7o_A Avirb, rRNA methyltransferase; SPOU, C-terminal knot, seMet; 2.37A {Streptomyces viridochromogenes} PDB: 1x7p_A*
Probab=25.35 E-value=62 Score=27.91 Aligned_cols=29 Identities=24% Similarity=0.162 Sum_probs=25.5
Q ss_pred CcEEECHHHHHHHHhccC-ccEEEEecCCc
Q 024840 227 TRACYGPKHVEVAHERMA-VQTLLITDDLF 255 (262)
Q Consensus 227 ~~v~YG~~eV~~Ale~GA-Ve~LLVsd~l~ 255 (262)
--.+||...|.+|++.|. ++.|+++++..
T Consensus 40 ~f~veG~~~V~eal~~~~~i~~l~~~~~~~ 69 (287)
T 1x7o_A 40 EFLVMGVRPISLAVEHGWPVRTLLYDGQRE 69 (287)
T ss_dssp EEEEESHHHHHHHHHTTCCEEEEEEESSCC
T ss_pred cEEEEeHHHHHHHHhCCCCeEEEEEecCcc
Confidence 467899999999999987 89999998864
No 49
>4g9s_B Inhibitor of G-type lysozyme, goose-type lysozyme; hydrolase inhibitor, hydrolase-hydrolase inhibitor; HET: FLC; 0.95A {Escherichia coli} PDB: 4dy3_A* 4dxz_A* 4dy5_A
Probab=25.01 E-value=1.4e+02 Score=21.53 Aligned_cols=39 Identities=13% Similarity=-0.008 Sum_probs=30.1
Q ss_pred EEeecCCCCeEEEEEEEEecCccccCCcEEEEEEccCCceEEEE
Q 024840 8 VVDYDKEGSVLRIRGKNILENEHVKIGAFHTLEIELHRAFVLRK 51 (262)
Q Consensus 8 ~vef~~~~~~Lri~G~i~~~~e~v~~G~~HT~~i~~~~~i~i~K 51 (262)
.|.|.+.++.-.|+|+|.- ++ ...+++....|+.+++..
T Consensus 6 ~V~F~~G~~~a~v~G~I~g-~~----~~~Y~~~a~aGQ~l~v~l 44 (111)
T 4g9s_B 6 NVEFRKGHSSAQYSGEIKG-YD----YDTYTFYAKKGQKVHVSI 44 (111)
T ss_dssp ECCCCTTCSEEEEEEEEET-TC----CEEEEEEECTTCEEEEEE
T ss_pred EEEECCCCCCeEEEEEEeC-CC----ceEEEEEecCCCEEEEEE
Confidence 4889999999999999954 33 235677777888887764
No 50
>3nk6_A 23S rRNA methyltransferase; nosiheptide, nosiheptide-resistance methyltransferase, 23S R methyltransferase; 2.00A {Streptomyces actuosus} PDB: 3nk7_A* 3gyq_A*
Probab=24.47 E-value=70 Score=27.43 Aligned_cols=29 Identities=3% Similarity=-0.200 Sum_probs=25.4
Q ss_pred CcEEECHHHHHHHHhcc-CccEEEEecCCc
Q 024840 227 TRACYGPKHVEVAHERM-AVQTLLITDDLF 255 (262)
Q Consensus 227 ~~v~YG~~eV~~Ale~G-AVe~LLVsd~l~ 255 (262)
--.+||...|.+|++.| .++.|+++++..
T Consensus 34 ~flveG~~~V~eaL~~~~~i~~l~~~~~~~ 63 (277)
T 3nk6_A 34 TTLIEDTEPLMECIRAGVQFIEVYGSSGTP 63 (277)
T ss_dssp EEEEESHHHHHHHHHTTCCEEEEEEETTSC
T ss_pred CEEEEeHHHHHHHHhCCCCeEEEEEeCCcc
Confidence 46899999999999998 789999998764
No 51
>4db3_A Glcnac kinase, N-acetyl-D-glucosamine kinase; structural genomics, center for structural genomics of infec diseases, csgid, transferase; 1.95A {Vibrio vulnificus}
Probab=24.20 E-value=1.4e+02 Score=25.62 Aligned_cols=69 Identities=10% Similarity=0.070 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHhcccccCccEEEEECCcccHHHHHHHHHHHHHhcccchhhhccCcEEEEEcCCCcchhHH
Q 024840 119 LNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKHSLR 191 (262)
Q Consensus 119 ~~~f~~~v~~~l~~~~~~~~v~~iIIaGPgf~k~~f~~~l~~~~~~~~~~~~~~~~~ki~~~~~s~~~~~gl~ 191 (262)
+++|.+.++..+....+..+++.|||+|.=...+.|.+.+.+.+.+.... ...+..+..+..+..+++.
T Consensus 250 ~~~~~~~La~~i~~l~~~l~p~~IvlgGgi~~~~~l~~~l~~~l~~~~~~----~~~~~~i~~s~lg~~a~~~ 318 (327)
T 4db3_A 250 VERFMELLAICFGNIFTANDPHVVALGGGLSNFELIYEEMPKRVPKYLLS----VAKCPKIIKAKHGDSGGVR 318 (327)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCSEEEEESGGGGCTHHHHHHHHHGGGGSCT----TCCCCEEEECSCGGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEeCcccchHHHHHHHHHHHHHHhcc----ccCCCEEEECCCCCcHHHH
Confidence 34455555555555555567889999995443345656555555433221 1123344555566565554
No 52
>4dzg_A PLIG; lysozyme inhibitor, G-type lysozyme binding, hydrolase inhib; HET: MLY; 2.02A {Aeromonas hydrophila subsp}
Probab=24.17 E-value=22 Score=26.42 Aligned_cols=24 Identities=8% Similarity=0.069 Sum_probs=18.6
Q ss_pred EEEEEEeecCCCCeEEEEEEEEec
Q 024840 4 FVSQVVDYDKEGSVLRIRGKNILE 27 (262)
Q Consensus 4 i~Ve~vef~~~~~~Lri~G~i~~~ 27 (262)
.+-+.|.|.+..+...++|+|.-.
T Consensus 4 ~~~~~V~F~~G~~~~~v~G~I~g~ 27 (114)
T 4dzg_A 4 ITTVPVQFAXGAHSAQLXGSFTGY 27 (114)
T ss_dssp CEEEECCCC-CCSEEEC-CCCBTT
T ss_pred ceEEEEEEccCCCceEEeEEecCC
Confidence 467899999999999999999643
No 53
>2pk8_A Uncharacterized protein PF0899; structural genomics, uncharacte protein, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=22.37 E-value=1.4e+02 Score=21.64 Aligned_cols=46 Identities=4% Similarity=-0.146 Sum_probs=24.6
Q ss_pred CcchhhHHHHHHHHHHHHHHHhcccccCccEEEEECCcccHHHHHHHHHHHH
Q 024840 111 AIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEA 162 (262)
Q Consensus 111 g~s~~~~~~~~f~~~v~~~l~~~~~~~~v~~iIIaGPgf~k~~f~~~l~~~~ 162 (262)
|.|-|. -+.+-+..|-+++++.-...-=.-||++||. |++|+.+..
T Consensus 8 ~~~~rg-dlirIl~~ieekinELk~dG~ePDIiL~G~e-----ayef~~e~v 53 (103)
T 2pk8_A 8 GSSTRG-DLIRILGEIEEKMNELKMDGFNPDIILFGRE-----AYNFLSNLL 53 (103)
T ss_dssp --CHHH-HHHHHHHHHHHHHHHHHHTTCCCCEEEECHH-----HHHHHHHHH
T ss_pred cccccc-cHHHHHHHHHHHHHHHHhcCCCCCeEEEcHH-----HHHHHHHHH
Confidence 444333 3555566555555554321111238899996 677777764
No 54
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=21.26 E-value=1.5e+02 Score=28.87 Aligned_cols=22 Identities=36% Similarity=0.445 Sum_probs=17.0
Q ss_pred ccEEEEECCcccHHHHHHHHHHHH
Q 024840 139 VRCAVIASPGFTKDQFHRHLLLEA 162 (262)
Q Consensus 139 v~~iIIaGPgf~k~~f~~~l~~~~ 162 (262)
.+.|||.||| |+.+.+.|....
T Consensus 531 ~r~vvl~GP~--K~tl~~~L~~~~ 552 (721)
T 2xkx_A 531 ARPIIILGPT--KDRANDDLLSEF 552 (721)
T ss_pred CCEEEEECCC--HHHHHHHHHHhC
Confidence 3789999998 888877666653
No 55
>2yhw_A Bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase; transferase, sialic acid, mannac, ROK family; HET: BM3 2PE; 1.64A {Homo sapiens} PDB: 2yhy_A* 2yi1_A* 3eo3_A
Probab=21.10 E-value=1.5e+02 Score=25.43 Aligned_cols=45 Identities=2% Similarity=-0.117 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHhcccccCccEEEEECCcccHHHHHHHHHHHHHhc
Q 024840 119 LNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERR 165 (262)
Q Consensus 119 ~~~f~~~v~~~l~~~~~~~~v~~iIIaGPgf~k~~f~~~l~~~~~~~ 165 (262)
++++.+.++..+....+..+++.|||+|.-. +.|.+.+.+...+.
T Consensus 265 l~~~~~~La~~i~~l~~~l~P~~IvlgG~i~--~~~~~~l~~~l~~~ 309 (343)
T 2yhw_A 265 LRTAGTALGLGVVNILHTMNPSLVILSGVLA--SHYIHIVKDVIRQQ 309 (343)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCSEEEEESTTH--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEeCCcH--HHHHHHHHHHHHHh
Confidence 4455555666665555556788999999753 56777777766543
No 56
>2e2o_A Hexokinase; acetate and sugar kinases, HSP70, actin superfamily, ribonuc fold, sugar kinase, glucose, phosphoryl transfer, transferase; HET: BGC; 1.65A {Sulfolobus tokodaii} PDB: 2e2n_A* 2e2p_A* 2e2q_A*
Probab=20.49 E-value=1.3e+02 Score=25.19 Aligned_cols=45 Identities=11% Similarity=0.033 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHhcccccCccEEEEECCcccHHHHHHHHHHHHHh
Q 024840 120 NKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAER 164 (262)
Q Consensus 120 ~~f~~~v~~~l~~~~~~~~v~~iIIaGPgf~k~~f~~~l~~~~~~ 164 (262)
+++.+.++..+....+..++..|||+|.-+..+.|.+.+.+...+
T Consensus 221 ~~~~~~La~~i~~l~~~l~p~~IvlgGgv~~~~~~~~~l~~~~~~ 265 (299)
T 2e2o_A 221 KQGAELLASQAVYLARKIGTNKVYLKGGMFRSNIYHKFFTLYLEK 265 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSEEEEESGGGGSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEECCccCcHHHHHHHHHHCCC
Confidence 344444444444444445788999999765446666666666543
No 57
>2qm1_A Glucokinase; alpha-beta structure, putative helix-turn-helix, structural PSI-2, protein structure initiative; HET: MSE; 2.02A {Enterococcus faecalis}
Probab=20.34 E-value=2.6e+02 Score=23.46 Aligned_cols=47 Identities=6% Similarity=-0.176 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHhcccccCccEEEEECCccc-HHHHHHHHHHHHHhc
Q 024840 119 LNKFFENVLQAFLKHVDFNVVRCAVIASPGFT-KDQFHRHLLLEAERR 165 (262)
Q Consensus 119 ~~~f~~~v~~~l~~~~~~~~v~~iIIaGPgf~-k~~f~~~l~~~~~~~ 165 (262)
++++...++..+.......+++.|||+|.-+. .+.|.+.+.+...+.
T Consensus 243 ~~~~~~~L~~~i~~l~~~l~p~~IvlgGg~~~~~~~~~~~l~~~l~~~ 290 (326)
T 2qm1_A 243 VDRVCFYLGLATGNLGNTLNPDSVVIGGGVSAAGEFLRSRVEKYFQEF 290 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCSEEEEEESGGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcCCCEEEEcChhhhchHHHHHHHHHHHHHh
Confidence 44555556666655555557889999997653 355666666665543
No 58
>3pr6_A Trapp-associated protein TCA17; longin fold, vesicle tethering regulation, trapp complex, TR network, transport protein; 1.80A {Saccharomyces cerevisiae}
Probab=20.26 E-value=3.2e+02 Score=21.51 Aligned_cols=73 Identities=16% Similarity=0.228 Sum_probs=51.6
Q ss_pred hhhHHHHHHhcC--CCC--CCcEEEEEEeCCeEEEEEE-ecceEEEEEEEEeeCCCCCCCCcchhh--HHHHHHHHHHHH
Q 024840 56 SLALDTLHQAAD--PTA--SADLAVVLMQEGLAHILLV-GRSMTITRSRIETSIPRKHGPAIAGYE--SALNKFFENVLQ 128 (262)
Q Consensus 56 ~~~le~L~~a~~--~~~--~~~~~~v~id~g~a~i~~l-~~~~~~~~~~i~~~ip~K~~~g~s~~~--~~~~~f~~~v~~ 128 (262)
...|+.+++-.. .+. ...++.+...++-+.-+.+ +..+++.+--+..+.. ...++ ..++.||+++-+
T Consensus 46 hsSLDi~Ee~~~~~~s~~~~~~LglL~~~e~~~VYGy~iTnt~vKfVl~~d~~~~------~~~~D~~~~Ik~~F~~vh~ 119 (162)
T 3pr6_A 46 NISLDYFESALVEWHSLDSKPLLKSIFQLEGVSVFAMLIKQTGLKIVIGFEQKSL------SGADDEFEAINQIFETVRK 119 (162)
T ss_dssp HHHHHHHHCTTCCCCCSSSSCCCEEEEEETTEEEEEEECTTTCCEEEEEEEGGGC------CCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhccccccccccceEeecCCeEEEEEEEcCCceEEEEEEccCCc------ccccchHHHHHHHHHHHHH
Confidence 366778887652 111 2247777778999999998 9999999987764321 11256 789999999987
Q ss_pred HHHhcc
Q 024840 129 AFLKHV 134 (262)
Q Consensus 129 ~l~~~~ 134 (262)
.-.+.+
T Consensus 120 ~Yvk~l 125 (162)
T 3pr6_A 120 IYIRVK 125 (162)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 776654
Done!