Query 024841
Match_columns 262
No_of_seqs 163 out of 970
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 07:48:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024841.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024841hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3866 PelB Pectate lyase [Ca 100.0 1.6E-57 3.5E-62 406.8 23.8 232 10-247 25-282 (345)
2 PF00544 Pec_lyase_C: Pectate 100.0 8.4E-53 1.8E-57 365.5 15.0 177 61-238 3-200 (200)
3 smart00656 Amb_all Amb_all dom 100.0 3.2E-49 6.9E-54 340.6 20.5 168 73-241 10-189 (190)
4 TIGR03805 beta_helix_1 paralle 99.3 2E-10 4.4E-15 106.3 20.8 87 49-140 1-96 (314)
5 PF14592 Chondroitinas_B: Chon 99.1 1.3E-09 2.7E-14 103.9 14.3 195 38-242 1-258 (425)
6 TIGR03808 RR_plus_rpt_1 twin-a 98.6 4.6E-06 9.9E-11 80.1 20.1 112 48-165 56-177 (455)
7 PLN02218 polygalacturonase ADP 98.5 5.4E-06 1.2E-10 80.0 16.6 103 98-204 219-323 (431)
8 PLN02793 Probable polygalactur 98.5 6.1E-06 1.3E-10 80.0 15.8 103 98-204 204-308 (443)
9 PLN03003 Probable polygalactur 98.4 1.8E-05 3.9E-10 76.8 17.2 103 98-204 165-269 (456)
10 PF13229 Beta_helix: Right han 98.4 1.1E-05 2.5E-10 65.0 13.4 134 96-243 2-139 (158)
11 PF12708 Pectate_lyase_3: Pect 98.4 5.3E-05 1.1E-09 65.1 18.3 174 48-242 20-221 (225)
12 PLN02188 polygalacturonase/gly 98.3 1.3E-05 2.8E-10 76.9 14.1 96 98-196 182-279 (404)
13 PLN02155 polygalacturonase 98.3 9.9E-06 2.2E-10 77.4 13.1 96 99-197 173-270 (394)
14 PLN02218 polygalacturonase ADP 98.3 8.8E-05 1.9E-09 71.7 19.5 138 97-248 195-352 (431)
15 TIGR03805 beta_helix_1 paralle 98.3 0.00013 2.9E-09 67.7 19.4 93 75-173 58-158 (314)
16 PLN03003 Probable polygalactur 98.1 0.00033 7.1E-09 68.1 19.2 152 79-247 113-297 (456)
17 PF00295 Glyco_hydro_28: Glyco 98.1 2.5E-05 5.4E-10 72.7 11.2 104 97-204 118-223 (326)
18 PLN03010 polygalacturonase 98.1 0.00037 8E-09 67.0 19.1 93 101-196 187-281 (409)
19 PLN03010 polygalacturonase 98.1 0.00041 8.9E-09 66.7 18.4 154 79-247 139-316 (409)
20 PLN02793 Probable polygalactur 98.0 0.00049 1.1E-08 66.8 18.1 137 97-247 180-336 (443)
21 PF01696 Adeno_E1B_55K: Adenov 98.0 0.00084 1.8E-08 63.7 19.0 184 34-243 47-242 (386)
22 PF00295 Glyco_hydro_28: Glyco 97.9 0.00021 4.7E-09 66.5 13.5 139 97-251 95-257 (326)
23 PF13229 Beta_helix: Right han 97.9 0.00024 5.2E-09 57.1 11.9 129 96-238 25-158 (158)
24 PLN02155 polygalacturonase 97.9 0.00094 2E-08 64.0 17.5 137 97-247 148-305 (394)
25 PLN02197 pectinesterase 97.9 0.0027 5.8E-08 63.7 20.8 104 41-147 279-409 (588)
26 PLN02188 polygalacturonase/gly 97.8 0.0018 4E-08 62.2 17.7 138 97-248 158-317 (404)
27 PF05048 NosD: Periplasmic cop 97.8 0.0016 3.6E-08 57.2 16.2 107 96-217 59-167 (236)
28 PLN02480 Probable pectinestera 97.8 0.0043 9.3E-08 58.4 19.7 103 42-147 53-182 (343)
29 PF05048 NosD: Periplasmic cop 97.8 0.0014 2.9E-08 57.7 15.4 130 94-239 35-166 (236)
30 PLN02176 putative pectinestera 97.7 0.0013 2.8E-08 61.8 14.1 103 42-147 44-173 (340)
31 PF07602 DUF1565: Protein of u 97.7 0.0051 1.1E-07 55.3 17.3 187 47-240 16-241 (246)
32 PLN02170 probable pectinestera 97.5 0.015 3.2E-07 57.7 18.9 171 42-217 230-451 (529)
33 TIGR03808 RR_plus_rpt_1 twin-a 97.4 0.004 8.6E-08 60.2 13.6 165 79-244 115-370 (455)
34 PLN02301 pectinesterase/pectin 97.4 0.019 4E-07 57.3 18.7 170 42-217 241-471 (548)
35 PLN02416 probable pectinestera 97.4 0.019 4E-07 57.3 18.7 172 42-217 235-465 (541)
36 PLN02432 putative pectinestera 97.4 0.0044 9.6E-08 57.1 13.1 98 47-147 24-138 (293)
37 PLN02201 probable pectinestera 97.3 0.019 4.2E-07 56.8 18.3 172 42-217 211-441 (520)
38 PLN02497 probable pectinestera 97.3 0.028 6E-07 52.7 18.5 97 48-147 46-167 (331)
39 PLN02217 probable pectinestera 97.3 0.027 5.8E-07 57.3 19.0 170 42-217 255-485 (670)
40 PLN02665 pectinesterase family 97.3 0.039 8.4E-07 52.4 18.6 99 47-148 81-205 (366)
41 PLN02708 Probable pectinestera 97.2 0.029 6.3E-07 56.1 18.1 120 42-164 246-409 (553)
42 PLN02713 Probable pectinestera 97.2 0.028 6.1E-07 56.3 17.9 170 42-217 255-488 (566)
43 smart00656 Amb_all Amb_all dom 97.2 0.012 2.7E-07 50.7 13.2 132 79-218 45-189 (190)
44 PLN02990 Probable pectinestera 97.2 0.049 1.1E-06 54.7 19.1 151 42-196 264-462 (572)
45 PLN02933 Probable pectinestera 97.1 0.062 1.3E-06 53.4 19.3 173 41-217 222-453 (530)
46 PLN03043 Probable pectinestera 97.1 0.051 1.1E-06 54.1 18.4 168 43-217 229-461 (538)
47 COG5434 PGU1 Endopygalactoruna 97.0 0.0092 2E-07 59.2 12.6 115 79-203 247-375 (542)
48 PLN02745 Putative pectinestera 97.0 0.064 1.4E-06 54.1 18.7 152 42-197 290-488 (596)
49 PLN02506 putative pectinestera 97.0 0.053 1.1E-06 54.0 17.8 166 47-217 245-458 (537)
50 PLN02488 probable pectinestera 97.0 0.066 1.4E-06 52.8 18.1 172 42-217 202-432 (509)
51 PLN02468 putative pectinestera 97.0 0.055 1.2E-06 54.2 18.0 168 43-217 264-489 (565)
52 PLN02682 pectinesterase family 97.0 0.013 2.9E-07 55.5 12.9 165 48-217 84-304 (369)
53 PLN02773 pectinesterase 97.0 0.018 4E-07 53.6 13.1 166 47-217 18-239 (317)
54 PLN02304 probable pectinestera 96.9 0.019 4.2E-07 54.6 12.8 104 42-148 80-213 (379)
55 PLN02916 pectinesterase family 96.9 0.1 2.2E-06 51.5 18.2 145 47-195 200-391 (502)
56 PLN02484 probable pectinestera 96.8 0.11 2.4E-06 52.3 18.4 150 42-195 277-474 (587)
57 PLN02634 probable pectinestera 96.8 0.034 7.4E-07 52.6 13.8 97 48-147 70-199 (359)
58 COG3420 NosD Nitrous oxidase a 96.8 0.17 3.7E-06 47.5 17.9 93 66-164 40-139 (408)
59 PLN02314 pectinesterase 96.8 0.017 3.7E-07 58.1 12.3 172 42-217 283-508 (586)
60 PLN02995 Probable pectinestera 96.7 0.024 5.2E-07 56.4 12.8 103 42-147 228-357 (539)
61 PF01095 Pectinesterase: Pecti 96.6 0.026 5.6E-07 52.2 11.2 110 47-164 13-146 (298)
62 PLN02313 Pectinesterase/pectin 96.5 0.038 8.3E-07 55.6 12.7 170 42-217 280-510 (587)
63 PLN02671 pectinesterase 96.3 0.1 2.2E-06 49.5 13.4 98 48-148 73-204 (359)
64 PF00544 Pec_lyase_C: Pectate 96.3 0.042 9E-07 47.8 10.0 114 93-215 74-200 (200)
65 PF12708 Pectate_lyase_3: Pect 96.1 0.031 6.7E-07 47.8 8.5 102 80-197 98-221 (225)
66 PRK10531 acyl-CoA thioesterase 96.1 0.13 2.9E-06 49.7 13.4 99 47-148 95-256 (422)
67 COG3866 PelB Pectate lyase [Ca 95.8 0.14 3.1E-06 47.3 11.6 137 97-242 95-252 (345)
68 COG5434 PGU1 Endopygalactoruna 94.1 0.3 6.4E-06 48.7 9.1 134 56-196 236-398 (542)
69 PF14592 Chondroitinas_B: Chon 93.4 0.19 4.2E-06 48.5 6.3 57 186-242 247-323 (425)
70 PF12541 DUF3737: Protein of u 90.5 2.7 5.9E-05 38.2 9.8 64 101-176 17-80 (277)
71 PF08480 Disaggr_assoc: Disagg 90.1 2.4 5.2E-05 36.7 8.7 89 154-242 2-110 (198)
72 COG3420 NosD Nitrous oxidase a 90.1 1.9 4.1E-05 40.7 8.7 93 74-170 99-197 (408)
73 COG4677 PemB Pectin methyleste 89.8 6 0.00013 37.3 11.6 145 47-204 95-294 (405)
74 PF12541 DUF3737: Protein of u 86.6 12 0.00025 34.3 11.1 30 185-217 195-224 (277)
75 PF03211 Pectate_lyase: Pectat 78.6 28 0.0006 30.8 10.2 91 66-164 13-116 (215)
76 TIGR03804 para_beta_helix para 72.7 8.7 0.00019 24.5 4.2 39 123-164 2-40 (44)
77 PLN02698 Probable pectinestera 72.2 27 0.00058 34.7 9.4 120 96-217 264-418 (497)
78 PF08480 Disaggr_assoc: Disagg 67.8 42 0.00091 29.1 8.4 73 128-200 32-113 (198)
79 PF01696 Adeno_E1B_55K: Adenov 57.0 38 0.00083 32.6 6.9 30 208-240 190-219 (386)
80 PF03718 Glyco_hydro_49: Glyco 52.5 1E+02 0.0022 31.1 9.2 65 96-166 345-413 (582)
81 TIGR03804 para_beta_helix para 42.8 68 0.0015 20.2 4.5 41 96-141 1-41 (44)
82 PF07602 DUF1565: Protein of u 36.1 3.3E+02 0.0071 24.6 10.1 73 94-171 114-193 (246)
83 smart00710 PbH1 Parallel beta- 32.3 68 0.0015 16.8 2.8 13 131-143 3-15 (26)
84 PRK03174 sspH acid-soluble spo 26.3 60 0.0013 22.8 2.2 19 121-139 14-32 (59)
85 cd06401 PB1_TFG The PB1 domain 23.4 79 0.0017 23.7 2.5 26 32-62 52-77 (81)
86 PRK01625 sspH acid-soluble spo 23.1 75 0.0016 22.3 2.2 19 121-139 14-32 (59)
87 TIGR02861 SASP_H small acid-so 21.9 81 0.0017 22.1 2.2 17 122-138 15-31 (58)
88 PF06355 Aegerolysin: Aegeroly 20.9 4.5E+02 0.0098 21.2 7.2 57 103-160 15-87 (131)
No 1
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.6e-57 Score=406.80 Aligned_cols=232 Identities=35% Similarity=0.558 Sum_probs=206.9
Q ss_pred ccccccccCCcccccC-------CCCCCCCCCeEEEcCCCCCCChhHHHHhhcCCCeEEEEEeeeEEEec------ceEE
Q 024841 10 DSCLRALAGQAEGFGR-------FAIGGLHGPVYFVTNLSDDGPGSLREGCRRREPLWIVFEVSGTIHLS------SYLS 76 (262)
Q Consensus 10 ~~~~~~~~~~a~Gfg~-------~ttGG~gg~v~~VT~l~dsg~GsLr~al~~~~pr~Ivf~vsG~I~l~------~~i~ 76 (262)
.+..|.|- ..+|||+ +||||.||++++|+|.+| |..++++.+|.++|+.+.|+|+++ ..|+
T Consensus 25 ~ant~t~~-~~~GfA~~~~~~~~GTtGG~~g~~v~v~ta~~-----l~~~~sa~~~~t~ii~v~Gti~~s~ps~~k~~ik 98 (345)
T COG3866 25 EANTQTLN-SFAGFASNPAGSKTGTTGGSGGDIVTVRTAND-----LETYLSASGKYTVIIVVKGTITASTPSDKKITIK 98 (345)
T ss_pred ccCCcccc-cccccccccCCCCCCcccCCCCcEEEEeeHHH-----HHHHhhccCceEEEEEEcceEeccCCCCceEEEe
Confidence 55666663 6899986 489999999999999999 999999999997777799999987 4577
Q ss_pred ecCCeEEEeeccceEEecCcEEEEeeccEEEeeeEEecCCCCCC--CcEEEcCCCceEEEEeeeeec--------CCCCe
Q 024841 77 VSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGHDV--DGIQIKPNSRHIWIDRCSLRD--------YDDGL 146 (262)
Q Consensus 77 i~sn~TI~G~g~~~~i~G~gi~i~~a~NVIIrnl~i~~~~~~~~--D~I~i~~~~~nVwIDHcs~s~--------~~Dg~ 146 (262)
+.+||||.|.|..++|.|++|.|+.+.|||||||+|++-..++. |+|+|..+++|||||||+|+. ..||+
T Consensus 99 i~sNkTivG~g~~a~~~g~gl~i~~a~NVIirNltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl 178 (345)
T COG3866 99 IGSNKTIVGSGADATLVGGGLKIRDAGNVIIRNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGL 178 (345)
T ss_pred eccccEEEeeccccEEEeceEEEEeCCcEEEEeeEEEeeccCCCCCCcEEeccCCeEEEEEeeEeccccccccccCCCcc
Confidence 78999999999999999999999999999999999998765554 999996689999999999998 67999
Q ss_pred eEeeeCCccEEEeccEEccCCceeeecCCCCC-CCCcceEEEEeceeecCCCCCCCccccCeEEEEcceEEcCcceeEEe
Q 024841 147 IDITRQSTDITVSRCYFTQHDKTMLIGADPSH-VGDRCIRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRNWGIYAVCA 225 (262)
Q Consensus 147 id~~~~s~nvTIS~~~f~~h~~~~l~G~~d~~-~~d~~~~vT~hhN~f~~~~~R~Pr~r~G~~hv~NN~~~n~~~~~~~~ 225 (262)
+|++.++++||||||+|++|+|++|+|++|+. .+|++++||+|||||.|+.+|+||+|+|.+|+|||||++...+++..
T Consensus 179 ~Dik~~AnyITiS~n~fhdh~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~~qR~PriRfG~vHvyNNYy~~~~~~g~a~ 258 (345)
T COG3866 179 VDIKKDANYITISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIHHNYFKNLYQRGPRIRFGMVHVYNNYYEGNPKFGVAI 258 (345)
T ss_pred EEeccCCcEEEEEeeeeecCCeeeeeccCCcccccCCceeEEEeccccccccccCCceEeeEEEEeccccccCcccceEE
Confidence 99999999999999999999999999999874 56788999999999999999999999999999999999776555555
Q ss_pred ccC--ceEEEEceEEecCCcceeE
Q 024841 226 SVE--SQIYSQCNIYEAGQKKRTF 247 (262)
Q Consensus 226 ~~~--a~v~~e~N~F~~~~~~~~~ 247 (262)
+++ |++++|+|||+....+.-+
T Consensus 259 ~iG~~AkiyvE~NyF~~~~~~~~f 282 (345)
T COG3866 259 TIGTSAKIYVENNYFENGSEGLGF 282 (345)
T ss_pred eeccceEEEEecceeccCCCCcee
Confidence 555 9999999999997665444
No 2
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=100.00 E-value=8.4e-53 Score=365.52 Aligned_cols=177 Identities=46% Similarity=0.737 Sum_probs=158.0
Q ss_pred EEEEeeeEEEecceEEecCCeEEEeeccceEEecCcEEEE-eeccEEEeeeEEecC----------C--CCCCCcEEEcC
Q 024841 61 IVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLTGKGLRLK-ECEHVIICNLEFEGG----------R--GHDVDGIQIKP 127 (262)
Q Consensus 61 Ivf~vsG~I~l~~~i~i~sn~TI~G~g~~~~i~G~gi~i~-~a~NVIIrnl~i~~~----------~--~~~~D~I~i~~ 127 (262)
+||+++|+|+++.+|+|.|||||+|+|.+++|.+.|+.+. +++|||||||+|+.. . ..+.|+|.++
T Consensus 3 ~ii~~~g~i~~~~~i~v~snkTi~G~g~~~~i~~~G~~i~~~~~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~- 81 (200)
T PF00544_consen 3 LIIKVSGTIDLKSPISVGSNKTIIGIGAGATIIGGGLRIIKGASNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAISID- 81 (200)
T ss_dssp EEEEEHHCCHHHCEEEEESSEEEEEETTTTEEESSEEEEEESCEEEEEES-EEECEEEECSTEEETTEEECS--SEEEE-
T ss_pred EEEEEEeEEccCCeEEECCCcEEEEccCCeEEECceEEEecCCCeEEEECCEEEeccccCCcccCCCccccCCCeEEEE-
Confidence 4678999999999999999999999999999999999997 899999999999982 1 2578999998
Q ss_pred CCceEEEEeeeeecC--------CCCeeEeeeCCccEEEeccEEccCCceeeecCCCCCCCCcceEEEEeceeecCCCCC
Q 024841 128 NSRHIWIDRCSLRDY--------DDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQR 199 (262)
Q Consensus 128 ~~~nVwIDHcs~s~~--------~Dg~id~~~~s~nvTIS~~~f~~h~~~~l~G~~d~~~~d~~~~vT~hhN~f~~~~~R 199 (262)
++++||||||+|+|. .|+++|++.++++||||||+|.+|.|++|+|++|....+..+++|||||||+++.+|
T Consensus 82 ~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~vTiS~n~f~~~~k~~l~G~~d~~~~~~~~~vT~hhN~f~~~~~R 161 (200)
T PF00544_consen 82 NSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNVTISNNIFDNHNKTMLIGSSDSNSTDRGLRVTFHHNYFANTNSR 161 (200)
T ss_dssp STEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEEEEES-EEEEEEETCEESSCTTCGGGTTEEEEEES-EEEEEEE-
T ss_pred ecccEEEeccEEeccccccccccCCceEEEEeCCceEEEEchhccccccccccCCCCCccccCCceEEEEeEEECchhhC
Confidence 789999999999999 999999999999999999999999999999998877667679999999999999999
Q ss_pred CCccccCeEEEEcceEEcCcceeEEeccCceEEEEceEE
Q 024841 200 HPRLRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIY 238 (262)
Q Consensus 200 ~Pr~r~G~~hv~NN~~~n~~~~~~~~~~~a~v~~e~N~F 238 (262)
+||+|+|++|+|||||+++..|++.++.++++++|+|||
T Consensus 162 ~P~~r~G~~Hv~NN~~~~~~~y~i~~~~~a~v~~E~N~F 200 (200)
T PF00544_consen 162 NPRVRFGYVHVYNNYYYNWSGYAIGARSGAQVLVENNYF 200 (200)
T ss_dssp TTEECSCEEEEES-EEEEECSESEEEETTEEEEEES-EE
T ss_pred CCcccccEEEEEEeeeECCCCEEEEccCCeEEEEECcCC
Confidence 999999999999999999999999999999999999999
No 3
>smart00656 Amb_all Amb_all domain.
Probab=100.00 E-value=3.2e-49 Score=340.60 Aligned_cols=168 Identities=44% Similarity=0.712 Sum_probs=158.0
Q ss_pred ceEEecCCeEEEeeccceEEecCcEEEEeeccEEEeeeEEecCCC---CCCCcEEEcCCCceEEEEeeeeecC-------
Q 024841 73 SYLSVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRG---HDVDGIQIKPNSRHIWIDRCSLRDY------- 142 (262)
Q Consensus 73 ~~i~i~sn~TI~G~g~~~~i~G~gi~i~~a~NVIIrnl~i~~~~~---~~~D~I~i~~~~~nVwIDHcs~s~~------- 142 (262)
.+|.|+|||||+|++..++|.|.+|+++.++|||||||+|+++.. ++.|+|.++ ++++||||||+|+|.
T Consensus 10 ~~i~v~snkTI~G~~~~~~i~g~gl~i~~~~NVIirnl~i~~~~~~~~~~~D~i~~~-~~~~VwIDHct~s~~~~~~~~~ 88 (190)
T smart00656 10 GTIIINSNKTIDGRGSKVEIKGGGLTIKSVSNVIIRNLTIHDPKPVYGSDGDAISID-GSSNVWIDHVSLSGCTVTGFGD 88 (190)
T ss_pred ceEEeCCCCEEEecCCCcEEEeeEEEEEecceEEEeCCEEECCccCCCCCCCEEEEe-CCCeEEEEccEeEcceeccCCC
Confidence 568999999999999889999999999889999999999998764 678999997 799999999999998
Q ss_pred --CCCeeEeeeCCccEEEeccEEccCCceeeecCCCCCCCCcceEEEEeceeecCCCCCCCccccCeEEEEcceEEcCcc
Q 024841 143 --DDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRNWGI 220 (262)
Q Consensus 143 --~Dg~id~~~~s~nvTIS~~~f~~h~~~~l~G~~d~~~~d~~~~vT~hhN~f~~~~~R~Pr~r~G~~hv~NN~~~n~~~ 220 (262)
.|+++|++.++++||||||+|.+|+|++|+|++++...++.++||||||||+++.+|+||+|+|++|++||||++|..
T Consensus 89 ~~~D~~~di~~~s~~vTvs~~~f~~h~~~~liG~~d~~~~~~~~~vT~h~N~~~~~~~R~P~~r~g~~hv~NN~~~n~~~ 168 (190)
T smart00656 89 DTYDGLIDIKNGSTYVTISNNYFHNHWKVMLLGHSDSDTDDGKMRVTIAHNYFGNLRQRAPRVRFGYVHVYNNYYTGWTS 168 (190)
T ss_pred CCCCccEEECcccccEEEECceEecCCEEEEEccCCCccccccceEEEECcEEcCcccCCCcccCCEEEEEeeEEeCccc
Confidence 899999999999999999999999999999998876555578999999999999999999999999999999999998
Q ss_pred eeEEeccCceEEEEceEEecC
Q 024841 221 YAVCASVESQIYSQCNIYEAG 241 (262)
Q Consensus 221 ~~~~~~~~a~v~~e~N~F~~~ 241 (262)
|+++.+.++++++|+|||+..
T Consensus 169 ~~~~~~~~~~v~~E~N~F~~~ 189 (190)
T smart00656 169 YAIGGRMGATILSEGNYFEAP 189 (190)
T ss_pred EeEecCCCcEEEEECeEEECC
Confidence 999999999999999999975
No 4
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=99.34 E-value=2e-10 Score=106.32 Aligned_cols=87 Identities=26% Similarity=0.374 Sum_probs=57.6
Q ss_pred HHHHhhcCCCeEEEEEeeeEEEecceEEec-CCeEEEeeccc-eEEe-------cCcEEEEeeccEEEeeeEEecCCCCC
Q 024841 49 LREGCRRREPLWIVFEVSGTIHLSSYLSVS-SYKTIDGRGQR-IKLT-------GKGLRLKECEHVIICNLEFEGGRGHD 119 (262)
Q Consensus 49 Lr~al~~~~pr~Ivf~vsG~I~l~~~i~i~-sn~TI~G~g~~-~~i~-------G~gi~i~~a~NVIIrnl~i~~~~~~~ 119 (262)
||+|+.+..|...|+-..|+..+++.|.|. +++||.|.|.. ..|. +.+|.+. ++||.|++|++++..
T Consensus 1 iQ~Ai~~A~~GDtI~l~~G~Y~~~~~l~I~~~~Iti~G~g~~~tvid~~~~~~~~~~i~v~-a~~VtI~~ltI~~~~--- 76 (314)
T TIGR03805 1 LQEALIAAQPGDTIVLPEGVFQFDRTLSLDADGVTIRGAGMDETILDFSGQVGGAEGLLVT-SDDVTLSDLAVENTK--- 76 (314)
T ss_pred CHhHHhhCCCCCEEEECCCEEEcceeEEEeCCCeEEEecCCCccEEecccCCCCCceEEEE-eCCeEEEeeEEEcCC---
Confidence 689999888876666689999888889997 89999998653 4444 2335553 677777777776532
Q ss_pred CCcEEEcCCCceEEEEeeeee
Q 024841 120 VDGIQIKPNSRHIWIDRCSLR 140 (262)
Q Consensus 120 ~D~I~i~~~~~nVwIDHcs~s 140 (262)
.+||.+. +++++.|.+|.+.
T Consensus 77 ~~GI~v~-~s~~i~I~n~~i~ 96 (314)
T TIGR03805 77 GDGVKVK-GSDGIIIRRLRVE 96 (314)
T ss_pred CCeEEEe-CCCCEEEEeeEEE
Confidence 2344443 3444444444444
No 5
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=99.12 E-value=1.3e-09 Score=103.88 Aligned_cols=195 Identities=15% Similarity=0.234 Sum_probs=102.0
Q ss_pred EcCCCCCCChhHHHHhhcCCCeEEEEEeeeEEEecceEEec------CCeEEEee-ccceEEecCc-EEEEeeccEEEee
Q 024841 38 VTNLSDDGPGSLREGCRRREPLWIVFEVSGTIHLSSYLSVS------SYKTIDGR-GQRIKLTGKG-LRLKECEHVIICN 109 (262)
Q Consensus 38 VT~l~dsg~GsLr~al~~~~pr~Ivf~vsG~I~l~~~i~i~------sn~TI~G~-g~~~~i~G~g-i~i~~a~NVIIrn 109 (262)
|+|.++ |++||+...|...|+-.+|+.+ ...|.+. .++||..+ ...+.|.|.. |.|. ++.++|++
T Consensus 1 Vss~~~-----lq~Ai~~a~pGD~I~L~~Gty~-~~~i~~~~~GT~~~PItl~Ae~~G~vvi~G~s~l~i~-G~yl~v~G 73 (425)
T PF14592_consen 1 VSSVAE-----LQSAIDNAKPGDTIVLADGTYK-DVEIVFKGSGTAAKPITLRAENPGKVVITGESNLRIS-GSYLVVSG 73 (425)
T ss_dssp E-SHHH-----HHHHHHH--TT-EEEE-SEEEE-T-EEEE-S--BTTB-EEEEESSTTSEEEEES-EEEE--SSSEEEES
T ss_pred CCCHHH-----HHHHHHhCCCCCEEEECCceee-cceEEEEecccCCCCEEEEecCCCeEEEecceeEEEE-eeeEEEeC
Confidence 566666 9999998877777777899997 3356652 46899887 5567788765 7775 78999999
Q ss_pred eEEecCCCC---------C-----CCcEEEc-----------------------CCCceEEEEeeeeecC--CCCeeEee
Q 024841 110 LEFEGGRGH---------D-----VDGIQIK-----------------------PNSRHIWIDRCSLRDY--DDGLIDIT 150 (262)
Q Consensus 110 l~i~~~~~~---------~-----~D~I~i~-----------------------~~~~nVwIDHcs~s~~--~Dg~id~~ 150 (262)
|.|+.+... . .+-.++. -.+++--||||.|..- ..-.+-+.
T Consensus 74 L~F~ng~~~~~~vi~fr~~~~~~~a~~~RlT~~vi~~fn~~~~~~~~~wv~~~~l~G~~NrvDhn~F~gK~~~G~~l~V~ 153 (425)
T PF14592_consen 74 LKFKNGYTPTGAVISFRNGGDASYANHCRLTNCVIDDFNNPDREESDNWVTIYSLYGKHNRVDHNYFQGKTNRGPTLAVR 153 (425)
T ss_dssp -EEEEE---TTT--TTS--SEEE-SSS-EEES-EEES--SS-S-SEEE---TT-----S-EEES-EEE---SSS-SEEE-
T ss_pred eEEecCCCCCCceEEeecCCCcceecceEEEeEEeeccCCcccccCceEEEEEEeeccCceEEccEeeccccCCcEEEEE
Confidence 999864210 0 0011110 0123344699999752 22233332
Q ss_pred -------eCCccEEEeccEEccC-------CceeeecCCCCCCCCcceEEEEeceeecCCCCCCCcc--ccCeEEEEcce
Q 024841 151 -------RQSTDITVSRCYFTQH-------DKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRL--RFGKVHLYNNY 214 (262)
Q Consensus 151 -------~~s~nvTIS~~~f~~h-------~~~~l~G~~d~~~~d~~~~vT~hhN~f~~~~~R~Pr~--r~G~~hv~NN~ 214 (262)
....+-+|.+|+|..+ ..++-+|.+.....+ -+.++.+|||.+|++-.=-+ +-+...+.||.
T Consensus 154 ~~~~~~~~~~~~h~IdhNyF~~rp~~g~NggEtIRiG~S~~S~~~--s~t~Ve~NlFe~cdGE~EIISvKS~~N~ir~Nt 231 (425)
T PF14592_consen 154 VILNGSQSIANYHRIDHNYFGPRPPKGGNGGETIRIGTSHSSMSD--SNTTVENNLFERCDGEVEIISVKSSDNTIRNNT 231 (425)
T ss_dssp -S--SS-------EEES-EEE-E---SSS---SEEE-SSTT-B-------EEES-EEEEE-SSSEEEEEESBT-EEES-E
T ss_pred ecccCccccccCceEEeccccccCCCCCCCceeEEEecccccccc--cceeeecchhhhcCCceeEEEeecCCceEeccE
Confidence 1245778999999843 346677766432222 36789999999999885444 34677888888
Q ss_pred EEcCcceeEEeccCceEEEEceEEecCC
Q 024841 215 TRNWGIYAVCASVESQIYSQCNIYEAGQ 242 (262)
Q Consensus 215 ~~n~~~~~~~~~~~a~v~~e~N~F~~~~ 242 (262)
|++... .+..+-|-.-.+++|||....
T Consensus 232 f~es~G-~ltlRHGn~n~V~gN~FiGng 258 (425)
T PF14592_consen 232 FRESQG-SLTLRHGNRNTVEGNVFIGNG 258 (425)
T ss_dssp EES-SS-EEEEEE-SS-EEES-EEEE-S
T ss_pred EEeccc-eEEEecCCCceEeccEEecCC
Confidence 888664 666666666667888888644
No 6
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=98.64 E-value=4.6e-06 Score=80.14 Aligned_cols=112 Identities=18% Similarity=0.200 Sum_probs=77.2
Q ss_pred hHHHHhhcCC-CeEEEEEeeeEEEecceEEecCCeEEEeeccceE---EecCc-EE-EEeeccEEEeeeEEecCCC---C
Q 024841 48 SLREGCRRRE-PLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQRIK---LTGKG-LR-LKECEHVIICNLEFEGGRG---H 118 (262)
Q Consensus 48 sLr~al~~~~-pr~Ivf~vsG~I~l~~~i~i~sn~TI~G~g~~~~---i~G~g-i~-i~~a~NVIIrnl~i~~~~~---~ 118 (262)
.|++||++.. |...|.-..|+. +..+|.+.+++||.|+.. ++ |.|.+ +. -..++||.|++|+|++... .
T Consensus 56 ALQaAIdaAa~gG~tV~Lp~G~Y-~~G~L~L~spltL~G~~g-At~~vIdG~~~lIiai~A~nVTIsGLtIdGsG~dl~~ 133 (455)
T TIGR03808 56 ALQRAIDEAARAQTPLALPPGVY-RTGPLRLPSGAQLIGVRG-ATRLVFTGGPSLLSSEGADGIGLSGLTLDGGGIPLPQ 133 (455)
T ss_pred HHHHHHHHhhcCCCEEEECCCce-ecccEEECCCcEEEecCC-cEEEEEcCCceEEEEecCCCeEEEeeEEEeCCCcccC
Confidence 4999997633 333233367777 247899999999999843 43 66554 22 2369999999999997542 2
Q ss_pred CCCcEEEcCCCceEEEEeeeeecCC-CCeeEeeeCCccEEEeccEEcc
Q 024841 119 DVDGIQIKPNSRHIWIDRCSLRDYD-DGLIDITRQSTDITVSRCYFTQ 165 (262)
Q Consensus 119 ~~D~I~i~~~~~nVwIDHcs~s~~~-Dg~id~~~~s~nvTIS~~~f~~ 165 (262)
..-+|.+. .++++-|.+|++.... .| +.+. .++ ..|++|.+.+
T Consensus 134 rdAgI~v~-~a~~v~Iedn~L~gsg~FG-I~L~-~~~-~~I~~N~I~g 177 (455)
T TIGR03808 134 RRGLIHCQ-GGRDVRITDCEITGSGGNG-IWLE-TVS-GDISGNTITQ 177 (455)
T ss_pred CCCEEEEc-cCCceEEEeeEEEcCCcce-EEEE-cCc-ceEecceEec
Confidence 34577885 8999999999999884 77 4452 344 6666665554
No 7
>PLN02218 polygalacturonase ADPG
Probab=98.50 E-value=5.4e-06 Score=80.05 Aligned_cols=103 Identities=20% Similarity=0.323 Sum_probs=75.1
Q ss_pred EEEeeccEEEeeeEEecCC-CCCCCcEEEcCCCceEEEEeeeeecCCCCeeEeeeCCccEEEeccEEccCCceeeecCCC
Q 024841 98 RLKECEHVIICNLEFEGGR-GHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADP 176 (262)
Q Consensus 98 ~i~~a~NVIIrnl~i~~~~-~~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~id~~~~s~nvTIS~~~f~~h~~~~l~G~~d 176 (262)
.+..++||+|++|+|.... ..+.|||.+. .++||.|.+|.++.++|- +.++.++.||+|++|.+. +..+.-+|+-.
T Consensus 219 ~~~~~~nV~i~~v~I~a~~~spNTDGIdi~-ss~nV~I~n~~I~tGDDc-IaIksgs~nI~I~n~~c~-~GHGisIGS~g 295 (431)
T PLN02218 219 SIEKCSNVQVSNVVVTAPADSPNTDGIHIT-NTQNIRVSNSIIGTGDDC-ISIESGSQNVQINDITCG-PGHGISIGSLG 295 (431)
T ss_pred EEEceeeEEEEEEEEeCCCCCCCCCcEeec-ccceEEEEccEEecCCce-EEecCCCceEEEEeEEEE-CCCCEEECcCC
Confidence 3345777888888777542 3568999997 899999999999999776 789889999999999985 33456688754
Q ss_pred CCC-CCcceEEEEeceeecCCCCCCCccc
Q 024841 177 SHV-GDRCIRVTIHHCLFDGTRQRHPRLR 204 (262)
Q Consensus 177 ~~~-~d~~~~vT~hhN~f~~~~~R~Pr~r 204 (262)
... .+.-.+|++.++.|.++. +-=|++
T Consensus 296 ~~~~~~~V~nV~v~n~~~~~t~-nGvRIK 323 (431)
T PLN02218 296 DDNSKAFVSGVTVDGAKLSGTD-NGVRIK 323 (431)
T ss_pred CCCCCceEEEEEEEccEEecCC-cceEEe
Confidence 322 222347899998887643 344454
No 8
>PLN02793 Probable polygalacturonase
Probab=98.46 E-value=6.1e-06 Score=79.96 Aligned_cols=103 Identities=22% Similarity=0.321 Sum_probs=72.5
Q ss_pred EEEeeccEEEeeeEEecCC-CCCCCcEEEcCCCceEEEEeeeeecCCCCeeEeeeCCccEEEeccEEccCCceeeecCCC
Q 024841 98 RLKECEHVIICNLEFEGGR-GHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADP 176 (262)
Q Consensus 98 ~i~~a~NVIIrnl~i~~~~-~~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~id~~~~s~nvTIS~~~f~~h~~~~l~G~~d 176 (262)
.+..++||.|++|+|.... ..+.|||.+. .+++|+|.+|.+..++|. +.++.++.||+|++|.+.. ..+.-+|+-.
T Consensus 204 ~~~~~~nv~i~~l~I~~p~~spNTDGIdi~-~s~nV~I~n~~I~~gDDc-Iaik~~s~nI~I~n~~c~~-GhGisIGSlg 280 (443)
T PLN02793 204 AFTNCRRVTISGLKVIAPATSPNTDGIHIS-ASRGVVIKDSIVRTGDDC-ISIVGNSSRIKIRNIACGP-GHGISIGSLG 280 (443)
T ss_pred EEEccCcEEEEEEEEECCCCCCCCCcEeee-ccceEEEEeCEEeCCCCe-EEecCCcCCEEEEEeEEeC-CccEEEeccc
Confidence 3345666667777776543 3568999997 899999999999988887 6787889999999999853 2356678742
Q ss_pred CC-CCCcceEEEEeceeecCCCCCCCccc
Q 024841 177 SH-VGDRCIRVTIHHCLFDGTRQRHPRLR 204 (262)
Q Consensus 177 ~~-~~d~~~~vT~hhN~f~~~~~R~Pr~r 204 (262)
.. ....-.+|++.++.|.+.. +-=|++
T Consensus 281 ~~~~~~~V~nV~v~n~~~~~t~-~GirIK 308 (443)
T PLN02793 281 KSNSWSEVRDITVDGAFLSNTD-NGVRIK 308 (443)
T ss_pred CcCCCCcEEEEEEEccEEeCCC-ceEEEE
Confidence 21 1122347899998887653 334443
No 9
>PLN03003 Probable polygalacturonase At3g15720
Probab=98.40 E-value=1.8e-05 Score=76.79 Aligned_cols=103 Identities=24% Similarity=0.414 Sum_probs=75.4
Q ss_pred EEEeeccEEEeeeEEecCC-CCCCCcEEEcCCCceEEEEeeeeecCCCCeeEeeeCCccEEEeccEEccCCceeeecCCC
Q 024841 98 RLKECEHVIICNLEFEGGR-GHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADP 176 (262)
Q Consensus 98 ~i~~a~NVIIrnl~i~~~~-~~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~id~~~~s~nvTIS~~~f~~h~~~~l~G~~d 176 (262)
.+..++||.|++|+|.... ..+.|||.+. .+++|+|.+|.++.++|. +.++.++.||+|++|.+.. .-+.-+|+..
T Consensus 165 ~i~~c~nV~i~~l~I~ap~~spNTDGIDi~-~S~nV~I~n~~I~tGDDC-Iaiksgs~NI~I~n~~c~~-GHGISIGSlg 241 (456)
T PLN03003 165 HISECNYVTISSLRINAPESSPNTDGIDVG-ASSNVVIQDCIIATGDDC-IAINSGTSNIHISGIDCGP-GHGISIGSLG 241 (456)
T ss_pred EEeccccEEEEEEEEeCCCCCCCCCcEeec-CcceEEEEecEEecCCCe-EEeCCCCccEEEEeeEEEC-CCCeEEeecc
Confidence 3345677777777777643 4568999997 899999999999999887 7888889999999999863 3356778654
Q ss_pred CCC-CCcceEEEEeceeecCCCCCCCccc
Q 024841 177 SHV-GDRCIRVTIHHCLFDGTRQRHPRLR 204 (262)
Q Consensus 177 ~~~-~d~~~~vT~hhN~f~~~~~R~Pr~r 204 (262)
+.. .+.-.+|++.++.|.++. +-=|++
T Consensus 242 ~~g~~~~V~NV~v~n~~~~~T~-nGvRIK 269 (456)
T PLN03003 242 KDGETATVENVCVQNCNFRGTM-NGARIK 269 (456)
T ss_pred CCCCcceEEEEEEEeeEEECCC-cEEEEE
Confidence 321 122358999999988753 333554
No 10
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=98.39 E-value=1.1e-05 Score=64.96 Aligned_cols=134 Identities=18% Similarity=0.276 Sum_probs=83.6
Q ss_pred cEEEEeeccEEEeeeEEecCCCCCCCcEEEcCCCceEEEEeeeeecCCCCeeEeeeCCccEEEeccEEccCCceeeecCC
Q 024841 96 GLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGAD 175 (262)
Q Consensus 96 gi~i~~a~NVIIrnl~i~~~~~~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~id~~~~s~nvTIS~~~f~~h~~~~l~G~~ 175 (262)
||.+....++.|++.+|+.. ..+||.+. .+..+.|++|+|.+...+ +.+. ...++++++|.|.+...+..+-..
T Consensus 2 Gi~i~~~~~~~i~~~~i~~~---~~~gi~~~-~~~~~~i~n~~i~~~~~g-i~~~-~~~~~~i~~~~~~~~~~~i~~~~~ 75 (158)
T PF13229_consen 2 GISINNGSNVTIRNCTISNN---GGDGIHVS-GSSNITIENCTISNGGYG-IYVS-GGSNVTISNNTISDNGSGIYVSGS 75 (158)
T ss_dssp CEEETTCEC-EEESEEEESS---SSECEEE--SSCESEEES-EEESSTTS-EEEE-CCES-EEES-EEES-SEEEECCS-
T ss_pred EEEEECCcCeEEeeeEEEeC---CCeEEEEE-cCCCeEEECeEEECCCcE-EEEe-cCCCeEEECeEEEEccceEEEEec
Confidence 57777777888999999875 45788886 566678889999884455 5553 457889999999877744444322
Q ss_pred CCCCCCcceEEEEeceeecCCCCCCCccc--cCeEEEEcceEEcCcceeEEeccCc--eEEEEceEEecCCc
Q 024841 176 PSHVGDRCIRVTIHHCLFDGTRQRHPRLR--FGKVHLYNNYTRNWGIYAVCASVES--QIYSQCNIYEAGQK 243 (262)
Q Consensus 176 d~~~~d~~~~vT~hhN~f~~~~~R~Pr~r--~G~~hv~NN~~~n~~~~~~~~~~~a--~v~~e~N~F~~~~~ 243 (262)
. .+++.+|.+.++..-.=.+. ...+.+.||.+.+...+++...... .+.+++|.|.....
T Consensus 76 ~--------~~~i~~~~i~~~~~~gi~~~~~~~~~~i~~n~~~~~~~~gi~~~~~~~~~~~i~~n~i~~~~~ 139 (158)
T PF13229_consen 76 S--------NITIENNRIENNGDYGIYISNSSSNVTIENNTIHNNGGSGIYLEGGSSPNVTIENNTISNNGG 139 (158)
T ss_dssp C--------S-EEES-EEECSSS-SCE-TCEECS-EEES-EEECCTTSSCEEEECC--S-EEECEEEECESS
T ss_pred C--------CceecCcEEEcCCCccEEEeccCCCEEEEeEEEEeCcceeEEEECCCCCeEEEEEEEEEeCcc
Confidence 1 47888888877755433332 2356788888887766666666555 78888888887553
No 11
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=98.38 E-value=5.3e-05 Score=65.07 Aligned_cols=174 Identities=18% Similarity=0.269 Sum_probs=99.6
Q ss_pred hHHHHh--hcCCCeEEEEEeeeEEEecceEEecCCeEEEeeccce-EEe--cC--cE-------EEEe-ecc--EEEeee
Q 024841 48 SLREGC--RRREPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQRI-KLT--GK--GL-------RLKE-CEH--VIICNL 110 (262)
Q Consensus 48 sLr~al--~~~~pr~Ivf~vsG~I~l~~~i~i~sn~TI~G~g~~~-~i~--G~--gi-------~i~~-a~N--VIIrnl 110 (262)
.|++|| .+....-+|+-..|+..++.+|.+.++++|.|.|... .+. +. .+ .+.. ..+ +.|+||
T Consensus 20 Aiq~Ai~~~~~~~g~~v~~P~G~Y~i~~~l~~~s~v~l~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~nl 99 (225)
T PF12708_consen 20 AIQAAIDAAAAAGGGVVYFPPGTYRISGTLIIPSNVTLRGAGGNSTILFLSGSGDSFSVVPGIGVFDSGNSNIGIQIRNL 99 (225)
T ss_dssp HHHHHHHHHCSTTSEEEEE-SEEEEESS-EEE-TTEEEEESSTTTEEEEECTTTSTSCCEEEEEECCSCSCCEEEEEEEE
T ss_pred HHHHhhhhcccCCCeEEEEcCcEEEEeCCeEcCCCeEEEccCCCeeEEEecCcccccccccceeeeecCCCCceEEEEee
Confidence 499999 3344444555589999999999999999999997643 343 11 11 1111 122 449999
Q ss_pred EEecCCCC---CCCcEEEcCCCceEEEEeeeeecCCCCeeEeeeCCccEEEe------ccEEccCCceeeecCCCCCCCC
Q 024841 111 EFEGGRGH---DVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVS------RCYFTQHDKTMLIGADPSHVGD 181 (262)
Q Consensus 111 ~i~~~~~~---~~D~I~i~~~~~nVwIDHcs~s~~~Dg~id~~~~s~nvTIS------~~~f~~h~~~~l~G~~d~~~~d 181 (262)
+|...... ...++.+. .++++||++|++.......+.+. ..+..++. ++.+++...
T Consensus 100 ~i~~~~~~~~~~~~~i~~~-~~~~~~i~nv~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~------------- 164 (225)
T PF12708_consen 100 TIDGNGIDPNNNNNGIRFN-SSQNVSISNVRIENSGGDGIYFN-TGTDYRIIGSTHVSGIFIDNGSN------------- 164 (225)
T ss_dssp EEEETCGCE-SCEEEEEET-TEEEEEEEEEEEES-SS-SEEEE-CCEECEEECCEEEEEEEEESCEE-------------
T ss_pred EEEcccccCCCCceEEEEE-eCCeEEEEeEEEEccCccEEEEE-ccccCcEeecccceeeeecccee-------------
Confidence 99977532 24678886 78999999999998654445543 11222221 222322110
Q ss_pred cceEEEEeceeecCCCCCCCcccc--CeEEEEcceEEcCcceeEEeccCceEEEEceEEecCC
Q 024841 182 RCIRVTIHHCLFDGTRQRHPRLRF--GKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGQ 242 (262)
Q Consensus 182 ~~~~vT~hhN~f~~~~~R~Pr~r~--G~~hv~NN~~~n~~~~~~~~~~~a~v~~e~N~F~~~~ 242 (262)
.+.....++.....- +.. -.+.+.||++.+....++....+..+.+++|.|++-.
T Consensus 165 ---~~~~~~~~~~~~~~g---~~~~~~~~~i~n~~~~~~~~~gi~i~~~~~~~i~n~~i~~~~ 221 (225)
T PF12708_consen 165 ---NVIVNNCIFNGGDNG---IILGNNNITISNNTFEGNCGNGINIEGGSNIIISNNTIENCD 221 (225)
T ss_dssp ---EEEEECEEEESSSCS---EECEEEEEEEECEEEESSSSESEEEEECSEEEEEEEEEESSS
T ss_pred ---EEEECCccccCCCce---eEeecceEEEEeEEECCccceeEEEECCeEEEEEeEEEECCc
Confidence 111122222211111 111 2456777777775556777777777888888888654
No 12
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=98.32 E-value=1.3e-05 Score=76.86 Aligned_cols=96 Identities=22% Similarity=0.381 Sum_probs=70.8
Q ss_pred EEEeeccEEEeeeEEecCC-CCCCCcEEEcCCCceEEEEeeeeecCCCCeeEeeeCCccEEEeccEEccCCceeeecCCC
Q 024841 98 RLKECEHVIICNLEFEGGR-GHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADP 176 (262)
Q Consensus 98 ~i~~a~NVIIrnl~i~~~~-~~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~id~~~~s~nvTIS~~~f~~h~~~~l~G~~d 176 (262)
.+..++||.|++|+|.... ..+.|||.+. .+++|+|.+|.++.++|. +.++.++++|+|++|.... .-++-+|+-.
T Consensus 182 ~~~~~~~v~i~~v~I~~~~~spNtDGidi~-~s~nV~I~n~~I~~GDDc-Iaiksg~~nI~I~n~~c~~-ghGisiGSlG 258 (404)
T PLN02188 182 ALVECRNFKGSGLKISAPSDSPNTDGIHIE-RSSGVYISDSRIGTGDDC-ISIGQGNSQVTITRIRCGP-GHGISVGSLG 258 (404)
T ss_pred EEEccccEEEEEEEEeCCCCCCCCCcEeee-CcccEEEEeeEEeCCCcE-EEEccCCccEEEEEEEEcC-CCcEEeCCCC
Confidence 3335677777777776543 3568999997 899999999999999886 7788889999999998853 3466778732
Q ss_pred CC-CCCcceEEEEeceeecCC
Q 024841 177 SH-VGDRCIRVTIHHCLFDGT 196 (262)
Q Consensus 177 ~~-~~d~~~~vT~hhN~f~~~ 196 (262)
.. ....-.+|++.++.|.++
T Consensus 259 ~~~~~~~V~nV~v~n~~~~~t 279 (404)
T PLN02188 259 RYPNEGDVTGLVVRDCTFTGT 279 (404)
T ss_pred CCCcCCcEEEEEEEeeEEECC
Confidence 21 112234788988888775
No 13
>PLN02155 polygalacturonase
Probab=98.31 E-value=9.9e-06 Score=77.39 Aligned_cols=96 Identities=18% Similarity=0.332 Sum_probs=71.7
Q ss_pred EEeeccEEEeeeEEecCC-CCCCCcEEEcCCCceEEEEeeeeecCCCCeeEeeeCCccEEEeccEEccCCceeeecCCCC
Q 024841 99 LKECEHVIICNLEFEGGR-GHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPS 177 (262)
Q Consensus 99 i~~a~NVIIrnl~i~~~~-~~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~id~~~~s~nvTIS~~~f~~h~~~~l~G~~d~ 177 (262)
+..++||.|++|+|.... ..+.|||.+. .+++|+|.+|.+..++|. +.++.++.||+|++|.+.. .-+.-||+...
T Consensus 173 ~~~~~nv~i~~v~I~~p~~~~NtDGidi~-~s~nV~I~~~~I~~gDDc-Iaik~gs~nI~I~n~~c~~-GhGisIGS~g~ 249 (394)
T PLN02155 173 LNGCTNVVVRNVKLVAPGNSPNTDGFHVQ-FSTGVTFTGSTVQTGDDC-VAIGPGTRNFLITKLACGP-GHGVSIGSLAK 249 (394)
T ss_pred EECeeeEEEEEEEEECCCCCCCCCccccc-cceeEEEEeeEEecCCce-EEcCCCCceEEEEEEEEEC-CceEEeccccc
Confidence 335677777777776543 3568999997 799999999999999886 7888889999999998874 33567887532
Q ss_pred C-CCCcceEEEEeceeecCCC
Q 024841 178 H-VGDRCIRVTIHHCLFDGTR 197 (262)
Q Consensus 178 ~-~~d~~~~vT~hhN~f~~~~ 197 (262)
. ....-.+|++.++.|.+..
T Consensus 250 ~~~~~~V~nV~v~n~~~~~t~ 270 (394)
T PLN02155 250 ELNEDGVENVTVSSSVFTGSQ 270 (394)
T ss_pred cCCCCcEEEEEEEeeEEeCCC
Confidence 2 1222348999999998753
No 14
>PLN02218 polygalacturonase ADPG
Probab=98.30 E-value=8.8e-05 Score=71.73 Aligned_cols=138 Identities=17% Similarity=0.171 Sum_probs=95.5
Q ss_pred EEEEeeccEEEeeeEEecCCCCCCCcEEEcCCCceEEEEeeeeec-----CCCCeeEeeeCCccEEEeccEEccCCceee
Q 024841 97 LRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRD-----YDDGLIDITRQSTDITVSRCYFTQHDKTML 171 (262)
Q Consensus 97 i~i~~a~NVIIrnl~i~~~~~~~~D~I~i~~~~~nVwIDHcs~s~-----~~Dg~id~~~~s~nvTIS~~~f~~h~~~~l 171 (262)
|.+..++|+.|++|++++...| .+.+. .+++|+|++.++.. ..|| +|+ ..+.+|+|++|.|...+-+.-
T Consensus 195 i~f~~~~nv~I~gitl~nSp~w---~i~~~-~~~nV~i~~v~I~a~~~spNTDG-Idi-~ss~nV~I~n~~I~tGDDcIa 268 (431)
T PLN02218 195 LTFYNSKSLIVKNLRVRNAQQI---QISIE-KCSNVQVSNVVVTAPADSPNTDG-IHI-TNTQNIRVSNSIIGTGDDCIS 268 (431)
T ss_pred EEEEccccEEEeCeEEEcCCCE---EEEEE-ceeeEEEEEEEEeCCCCCCCCCc-Eee-cccceEEEEccEEecCCceEE
Confidence 4566899999999999988655 36776 79999999999864 4688 788 568999999999998877777
Q ss_pred ecCCCCCCCCcceEEEEeceeecCCCC-------CCCccc-cCeEEEEcceEEcCcceeEE-----e--ccCceEEEEce
Q 024841 172 IGADPSHVGDRCIRVTIHHCLFDGTRQ-------RHPRLR-FGKVHLYNNYTRNWGIYAVC-----A--SVESQIYSQCN 236 (262)
Q Consensus 172 ~G~~d~~~~d~~~~vT~hhN~f~~~~~-------R~Pr~r-~G~~hv~NN~~~n~~~~~~~-----~--~~~a~v~~e~N 236 (262)
+.++. .+|++.++++..... +.+.-. .-.+++.|+.+.+.. .++. . +.=..|.+++.
T Consensus 269 Iksgs-------~nI~I~n~~c~~GHGisIGS~g~~~~~~~V~nV~v~n~~~~~t~-nGvRIKT~~Gg~G~v~nI~f~ni 340 (431)
T PLN02218 269 IESGS-------QNVQINDITCGPGHGISIGSLGDDNSKAFVSGVTVDGAKLSGTD-NGVRIKTYQGGSGTASNIIFQNI 340 (431)
T ss_pred ecCCC-------ceEEEEeEEEECCCCEEECcCCCCCCCceEEEEEEEccEEecCC-cceEEeecCCCCeEEEEEEEEeE
Confidence 76542 268888877743222 111000 013566777766643 2332 1 12236888999
Q ss_pred EEecCCcceeEe
Q 024841 237 IYEAGQKKRTFE 248 (262)
Q Consensus 237 ~F~~~~~~~~~~ 248 (262)
..++...|..++
T Consensus 341 ~m~~V~~pI~Id 352 (431)
T PLN02218 341 QMENVKNPIIID 352 (431)
T ss_pred EEEcccccEEEE
Confidence 999888887653
No 15
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=98.27 E-value=0.00013 Score=67.69 Aligned_cols=93 Identities=25% Similarity=0.300 Sum_probs=66.7
Q ss_pred EEe-cCCeEEEeeccceEEe---cCcEEEEeeccEEEeeeEEecCCC----CCCCcEEEcCCCceEEEEeeeeecCCCCe
Q 024841 75 LSV-SSYKTIDGRGQRIKLT---GKGLRLKECEHVIICNLEFEGGRG----HDVDGIQIKPNSRHIWIDRCSLRDYDDGL 146 (262)
Q Consensus 75 i~i-~sn~TI~G~g~~~~i~---G~gi~i~~a~NVIIrnl~i~~~~~----~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~ 146 (262)
+.+ .+++||.+. +|. +.+|.+..+++++|+++++..... ...+||.+. .++++.|.+|.++...|.-
T Consensus 58 i~v~a~~VtI~~l----tI~~~~~~GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~-~s~~v~I~~n~i~g~~d~G 132 (314)
T TIGR03805 58 LLVTSDDVTLSDL----AVENTKGDGVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPV-ESTNVLVEDSYVRGASDAG 132 (314)
T ss_pred EEEEeCCeEEEee----EEEcCCCCeEEEeCCCCEEEEeeEEEeccCccccCCcceEEEe-ccCCEEEECCEEECCCccc
Confidence 444 366777765 222 357888889999999999974421 346788887 7899999999998877644
Q ss_pred eEeeeCCccEEEeccEEccCCceeeec
Q 024841 147 IDITRQSTDITVSRCYFTQHDKTMLIG 173 (262)
Q Consensus 147 id~~~~s~nvTIS~~~f~~h~~~~l~G 173 (262)
+.+ ..+++++|++|.+.+..++..+-
T Consensus 133 Iyv-~~s~~~~v~nN~~~~n~~GI~i~ 158 (314)
T TIGR03805 133 IYV-GQSQNIVVRNNVAEENVAGIEIE 158 (314)
T ss_pred EEE-CCCCCeEEECCEEccCcceEEEE
Confidence 556 35788999999887665555443
No 16
>PLN03003 Probable polygalacturonase At3g15720
Probab=98.12 E-value=0.00033 Score=68.12 Aligned_cols=152 Identities=16% Similarity=0.247 Sum_probs=101.6
Q ss_pred CCeEEEeeccceEEecCc-------------EEEEeeccEEEeeeEEecCCCCCCCcEEEcCCCceEEEEeeeeec----
Q 024841 79 SYKTIDGRGQRIKLTGKG-------------LRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRD---- 141 (262)
Q Consensus 79 sn~TI~G~g~~~~i~G~g-------------i~i~~a~NVIIrnl~i~~~~~~~~D~I~i~~~~~nVwIDHcs~s~---- 141 (262)
.+++|.|.| +|.|.| |.+..++|+.|++|++++...|. +.+. .+++|.|++.++..
T Consensus 113 ~~i~I~G~G---tIDGqG~~wW~~~~~rP~~l~f~~~~nv~I~gitl~NSp~w~---i~i~-~c~nV~i~~l~I~ap~~s 185 (456)
T PLN03003 113 EGLVIEGDG---EINGQGSSWWEHKGSRPTALKFRSCNNLRLSGLTHLDSPMAH---IHIS-ECNYVTISSLRINAPESS 185 (456)
T ss_pred cceEEeccc---eEeCCchhhhhcccCCceEEEEEecCCcEEeCeEEecCCcEE---EEEe-ccccEEEEEEEEeCCCCC
Confidence 466776653 466533 67778999999999999876543 6666 78999999999974
Q ss_pred -CCCCeeEeeeCCccEEEeccEEccCCceeeecCCCCCCCCcceEEEEeceeecCCCC-------CCCcc-ccCeEEEEc
Q 024841 142 -YDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQ-------RHPRL-RFGKVHLYN 212 (262)
Q Consensus 142 -~~Dg~id~~~~s~nvTIS~~~f~~h~~~~l~G~~d~~~~d~~~~vT~hhN~f~~~~~-------R~Pr~-r~G~~hv~N 212 (262)
..|| +|+ ..+++|+|.+|.|...+-+.-+.++.+ +|++-++.+..... +.... ..-.+++.|
T Consensus 186 pNTDG-IDi-~~S~nV~I~n~~I~tGDDCIaiksgs~-------NI~I~n~~c~~GHGISIGSlg~~g~~~~V~NV~v~n 256 (456)
T PLN03003 186 PNTDG-IDV-GASSNVVIQDCIIATGDDCIAINSGTS-------NIHISGIDCGPGHGISIGSLGKDGETATVENVCVQN 256 (456)
T ss_pred CCCCc-Eee-cCcceEEEEecEEecCCCeEEeCCCCc-------cEEEEeeEEECCCCeEEeeccCCCCcceEEEEEEEe
Confidence 4688 788 578999999999998888877765422 56666665532211 11000 001456788
Q ss_pred ceEEcCcceeEEe-----c--cCceEEEEceEEecCCcceeE
Q 024841 213 NYTRNWGIYAVCA-----S--VESQIYSQCNIYEAGQKKRTF 247 (262)
Q Consensus 213 N~~~n~~~~~~~~-----~--~~a~v~~e~N~F~~~~~~~~~ 247 (262)
+.+.+.. .++.. + .-..|.+|+-.+++...|..+
T Consensus 257 ~~~~~T~-nGvRIKT~~Gg~G~v~nItf~nI~m~nV~~pI~I 297 (456)
T PLN03003 257 CNFRGTM-NGARIKTWQGGSGYARMITFNGITLDNVENPIII 297 (456)
T ss_pred eEEECCC-cEEEEEEeCCCCeEEEEEEEEeEEecCccceEEE
Confidence 8777643 23321 1 123577777777777777665
No 17
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=98.12 E-value=2.5e-05 Score=72.73 Aligned_cols=104 Identities=26% Similarity=0.482 Sum_probs=75.4
Q ss_pred EEEEeeccEEEeeeEEecCC-CCCCCcEEEcCCCceEEEEeeeeecCCCCeeEeeeCCccEEEeccEEccCCceeeecCC
Q 024841 97 LRLKECEHVIICNLEFEGGR-GHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGAD 175 (262)
Q Consensus 97 i~i~~a~NVIIrnl~i~~~~-~~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~id~~~~s~nvTIS~~~f~~h~~~~l~G~~ 175 (262)
+.+..++||.|++|+|+... ....|||.+. ++++|.|++|.+..++|. +.+|.++.+|+|++|.|.. ..+.-+|+.
T Consensus 118 ~~~~~~~nv~i~~i~I~~~~~~~NtDGid~~-~s~nv~I~n~~i~~gDD~-Iaiks~~~ni~v~n~~~~~-ghGisiGS~ 194 (326)
T PF00295_consen 118 IHINDCDNVTISNITINNPANSPNTDGIDID-SSKNVTIENCFIDNGDDC-IAIKSGSGNILVENCTCSG-GHGISIGSE 194 (326)
T ss_dssp EEEESEEEEEEESEEEEEGGGCTS--SEEEE-SEEEEEEESEEEESSSES-EEESSEECEEEEESEEEES-SSEEEEEEE
T ss_pred EEEEccCCeEEcceEEEecCCCCCcceEEEE-eeeEEEEEEeecccccCc-ccccccccceEEEeEEEec-cccceeeec
Confidence 56667899999999998754 3578999998 789999999999999777 6787777799999999974 344667754
Q ss_pred CCCC-CCcceEEEEeceeecCCCCCCCccc
Q 024841 176 PSHV-GDRCIRVTIHHCLFDGTRQRHPRLR 204 (262)
Q Consensus 176 d~~~-~d~~~~vT~hhN~f~~~~~R~Pr~r 204 (262)
.... ...-.+|+|.++.|.++. |--|++
T Consensus 195 ~~~~~~~~i~nV~~~n~~i~~t~-~gi~iK 223 (326)
T PF00295_consen 195 GSGGSQNDIRNVTFENCTIINTD-NGIRIK 223 (326)
T ss_dssp SSSSE--EEEEEEEEEEEEESES-EEEEEE
T ss_pred cCCccccEEEeEEEEEEEeeccc-eEEEEE
Confidence 3221 011247999999887753 444553
No 18
>PLN03010 polygalacturonase
Probab=98.11 E-value=0.00037 Score=67.01 Aligned_cols=93 Identities=24% Similarity=0.397 Sum_probs=62.3
Q ss_pred eeccEEEeeeEEecCC-CCCCCcEEEcCCCceEEEEeeeeecCCCCeeEeeeCCccEEEeccEEccCCceeeecCCCCC-
Q 024841 101 ECEHVIICNLEFEGGR-GHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSH- 178 (262)
Q Consensus 101 ~a~NVIIrnl~i~~~~-~~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~id~~~~s~nvTIS~~~f~~h~~~~l~G~~d~~- 178 (262)
.++||.|++|+|.... ..+.|||.+. .+++|+|.+|.+..++|. +.+|.++++++|.++.... .-+.-+|+..+.
T Consensus 187 ~~~nv~i~~i~I~a~~~s~NTDGiDi~-~s~nV~I~n~~I~~gDDc-Iaiksgs~ni~I~~~~C~~-gHGisIGS~g~~~ 263 (409)
T PLN03010 187 TCNYVAISKINILAPETSPNTDGIDIS-YSTNINIFDSTIQTGDDC-IAINSGSSNINITQINCGP-GHGISVGSLGADG 263 (409)
T ss_pred ccccEEEEEEEEeCCCCCCCCCceeee-ccceEEEEeeEEecCCCe-EEecCCCCcEEEEEEEeEC-cCCEEEccCCCCC
Confidence 4555555555555432 3468999997 789999999999999777 7788777777777555432 224567764322
Q ss_pred CCCcceEEEEeceeecCC
Q 024841 179 VGDRCIRVTIHHCLFDGT 196 (262)
Q Consensus 179 ~~d~~~~vT~hhN~f~~~ 196 (262)
..+.-.+|++.++.|.+.
T Consensus 264 ~~~~V~nV~v~n~~i~~t 281 (409)
T PLN03010 264 ANAKVSDVHVTHCTFNQT 281 (409)
T ss_pred CCCeeEEEEEEeeEEeCC
Confidence 112224788888888764
No 19
>PLN03010 polygalacturonase
Probab=98.06 E-value=0.00041 Score=66.68 Aligned_cols=154 Identities=20% Similarity=0.243 Sum_probs=99.7
Q ss_pred CCeEEEeeccceEEecCc------EEEEeeccEEEeeeEEecCCCCCCCcEEEcCCCceEEEEeeeeec-----CCCCee
Q 024841 79 SYKTIDGRGQRIKLTGKG------LRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRD-----YDDGLI 147 (262)
Q Consensus 79 sn~TI~G~g~~~~i~G~g------i~i~~a~NVIIrnl~i~~~~~~~~D~I~i~~~~~nVwIDHcs~s~-----~~Dg~i 147 (262)
.|++|.|.| +|.|.| |.+..++|+.|++|++++...|. +.+. .+++|.|++.++.. ..|| +
T Consensus 139 ~nv~I~G~G---~IDG~G~~ww~~l~~~~~~nv~v~gitl~nsp~~~---i~i~-~~~nv~i~~i~I~a~~~s~NTDG-i 210 (409)
T PLN03010 139 SGLMIDGSG---TIDGRGSSFWEALHISKCDNLTINGITSIDSPKNH---ISIK-TCNYVAISKINILAPETSPNTDG-I 210 (409)
T ss_pred cccEEeece---EEeCCCccccceEEEEeecCeEEeeeEEEcCCceE---EEEe-ccccEEEEEEEEeCCCCCCCCCc-e
Confidence 466777653 577755 67788999999999999876543 6676 78999999999864 5688 7
Q ss_pred EeeeCCccEEEeccEEccCCceeeecCCCCCCCCcceEEEEeceeecCC-----CCCCCc-cccCeEEEEcceEEcCcce
Q 024841 148 DITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGT-----RQRHPR-LRFGKVHLYNNYTRNWGIY 221 (262)
Q Consensus 148 d~~~~s~nvTIS~~~f~~h~~~~l~G~~d~~~~d~~~~vT~hhN~f~~~-----~~R~Pr-~r~G~~hv~NN~~~n~~~~ 221 (262)
|+ ..+++|+|++|.|...+-+.-+.++.. ..+|+.-.|...|- ..+... -..-.+++.|+.+.+.. +
T Consensus 211 Di-~~s~nV~I~n~~I~~gDDcIaiksgs~-----ni~I~~~~C~~gHGisIGS~g~~~~~~~V~nV~v~n~~i~~t~-~ 283 (409)
T PLN03010 211 DI-SYSTNINIFDSTIQTGDDCIAINSGSS-----NINITQINCGPGHGISVGSLGADGANAKVSDVHVTHCTFNQTT-N 283 (409)
T ss_pred ee-eccceEEEEeeEEecCCCeEEecCCCC-----cEEEEEEEeECcCCEEEccCCCCCCCCeeEEEEEEeeEEeCCC-c
Confidence 88 568999999999998888877765421 12333333332211 001000 00114567777777643 2
Q ss_pred eEEe----cc---CceEEEEceEEecCCcceeE
Q 024841 222 AVCA----SV---ESQIYSQCNIYEAGQKKRTF 247 (262)
Q Consensus 222 ~~~~----~~---~a~v~~e~N~F~~~~~~~~~ 247 (262)
++.. +. =..|.+|+-.+++...|..+
T Consensus 284 GirIKt~~G~~G~v~nItf~nI~m~~v~~pI~I 316 (409)
T PLN03010 284 GARIKTWQGGQGYARNISFENITLINTKNPIII 316 (409)
T ss_pred ceEEEEecCCCEEEEEeEEEeEEEecCCccEEE
Confidence 3321 11 13577788888887777665
No 20
>PLN02793 Probable polygalacturonase
Probab=98.01 E-value=0.00049 Score=66.84 Aligned_cols=137 Identities=16% Similarity=0.205 Sum_probs=92.5
Q ss_pred EEEEeeccEEEeeeEEecCCCCCCCcEEEcCCCceEEEEeeeeec-----CCCCeeEeeeCCccEEEeccEEccCCceee
Q 024841 97 LRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRD-----YDDGLIDITRQSTDITVSRCYFTQHDKTML 171 (262)
Q Consensus 97 i~i~~a~NVIIrnl~i~~~~~~~~D~I~i~~~~~nVwIDHcs~s~-----~~Dg~id~~~~s~nvTIS~~~f~~h~~~~l 171 (262)
|.+..++|+.|++|++++...|. +.+. .+++|.|++.++.. ..|| +|+ ..+++|+|++|.|...+-+..
T Consensus 180 i~f~~~~nv~v~gitl~nSp~~~---i~~~-~~~nv~i~~l~I~~p~~spNTDG-Idi-~~s~nV~I~n~~I~~gDDcIa 253 (443)
T PLN02793 180 ITFHKCKDLRVENLNVIDSQQMH---IAFT-NCRRVTISGLKVIAPATSPNTDG-IHI-SASRGVVIKDSIVRTGDDCIS 253 (443)
T ss_pred EEEEeeccEEEECeEEEcCCCeE---EEEE-ccCcEEEEEEEEECCCCCCCCCc-Eee-eccceEEEEeCEEeCCCCeEE
Confidence 56668999999999999876543 5666 78999999999964 4688 788 578999999999998888777
Q ss_pred ecCCCCCCCCcceEEEEeceeecCCCC-------CCCcc-ccCeEEEEcceEEcCcceeEEe-----c--cCceEEEEce
Q 024841 172 IGADPSHVGDRCIRVTIHHCLFDGTRQ-------RHPRL-RFGKVHLYNNYTRNWGIYAVCA-----S--VESQIYSQCN 236 (262)
Q Consensus 172 ~G~~d~~~~d~~~~vT~hhN~f~~~~~-------R~Pr~-r~G~~hv~NN~~~n~~~~~~~~-----~--~~a~v~~e~N 236 (262)
+.++. .+|++.++.+..... +.... ..-.+.+.|+.+.+.. +++.. + .=..|.+++-
T Consensus 254 ik~~s-------~nI~I~n~~c~~GhGisIGSlg~~~~~~~V~nV~v~n~~~~~t~-~GirIKt~~g~~G~v~nItf~ni 325 (443)
T PLN02793 254 IVGNS-------SRIKIRNIACGPGHGISIGSLGKSNSWSEVRDITVDGAFLSNTD-NGVRIKTWQGGSGNASKITFQNI 325 (443)
T ss_pred ecCCc-------CCEEEEEeEEeCCccEEEecccCcCCCCcEEEEEEEccEEeCCC-ceEEEEEeCCCCEEEEEEEEEeE
Confidence 75432 257777776633211 11100 0013567787777643 23321 1 1235777777
Q ss_pred EEecCCcceeE
Q 024841 237 IYEAGQKKRTF 247 (262)
Q Consensus 237 ~F~~~~~~~~~ 247 (262)
..++...|..+
T Consensus 326 ~m~nv~~pI~I 336 (443)
T PLN02793 326 FMENVSNPIII 336 (443)
T ss_pred EEecCCceEEE
Confidence 77777777665
No 21
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=98.01 E-value=0.00084 Score=63.67 Aligned_cols=184 Identities=17% Similarity=0.288 Sum_probs=133.3
Q ss_pred CeEEEcCCCCCCChhHHHHhhcCCCeEEEEEeeeEEEecceEEecCCeEEEeeccceEEecC---cEEE---------Ee
Q 024841 34 PVYFVTNLSDDGPGSLREGCRRREPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLTGK---GLRL---------KE 101 (262)
Q Consensus 34 ~v~~VT~l~dsg~GsLr~al~~~~pr~Ivf~vsG~I~l~~~i~i~sn~TI~G~g~~~~i~G~---gi~i---------~~ 101 (262)
++|.+.=.+| |.+||..-.. |..+.+-++.+.++|.|.+..+|+|+|..+.|.+. +|.+ .+
T Consensus 47 kt~~~~P~eD-----le~~I~~haK--VaL~Pg~~Y~i~~~V~I~~~cYIiGnGA~V~v~~~~~~~f~v~~~~~~P~V~g 119 (386)
T PF01696_consen 47 KTYWMEPGED-----LEEAIRQHAK--VALRPGAVYVIRKPVNIRSCCYIIGNGATVRVNGPDRVAFRVCMQSMGPGVVG 119 (386)
T ss_pred EEEEcCCCcC-----HHHHHHhcCE--EEeCCCCEEEEeeeEEecceEEEECCCEEEEEeCCCCceEEEEcCCCCCeEee
Confidence 3455555566 9999988653 46778888889999999999999999888888643 2433 24
Q ss_pred eccEEEeeeEEecCCCCCCCcEEEcCCCceEEEEeeeeecCCCCeeEeeeCCccEEEeccEEccCCceeeecCCCCCCCC
Q 024841 102 CEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGD 181 (262)
Q Consensus 102 a~NVIIrnl~i~~~~~~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~id~~~~s~nvTIS~~~f~~h~~~~l~G~~d~~~~d 181 (262)
=.+|.+.|++|.... .-.|+-+. ...++.|..|.|....--.++.+ ....|..|.|..-+++.... +
T Consensus 120 M~~VtF~ni~F~~~~--~~~g~~f~-~~t~~~~hgC~F~gf~g~cl~~~---~~~~VrGC~F~~C~~gi~~~-~------ 186 (386)
T PF01696_consen 120 MEGVTFVNIRFEGRD--TFSGVVFH-ANTNTLFHGCSFFGFHGTCLESW---AGGEVRGCTFYGCWKGIVSR-G------ 186 (386)
T ss_pred eeeeEEEEEEEecCC--ccceeEEE-ecceEEEEeeEEecCcceeEEEc---CCcEEeeeEEEEEEEEeecC-C------
Confidence 578999999999764 23455565 67899999999999887777764 46789999998887777532 2
Q ss_pred cceEEEEeceeecCCCCCCCccccCeEEEEcceEEcCcceeEEeccCceEEEEceEEecCCc
Q 024841 182 RCIRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGQK 243 (262)
Q Consensus 182 ~~~~vT~hhN~f~~~~~R~Pr~r~G~~hv~NN~~~n~~~~~~~~~~~a~v~~e~N~F~~~~~ 243 (262)
+..+++.+|.|..|.-=- +..|.+++.+|.+.+..= .+-....+ .+.+|.|....+
T Consensus 187 -~~~lsVk~C~FekC~igi--~s~G~~~i~hn~~~ec~C-f~l~~g~g--~i~~N~v~~~~~ 242 (386)
T PF01696_consen 187 -KSKLSVKKCVFEKCVIGI--VSEGPARIRHNCASECGC-FVLMKGTG--SIKHNMVCGPND 242 (386)
T ss_pred -cceEEeeheeeeheEEEE--EecCCeEEecceecccce-EEEEcccE--EEeccEEeCCCC
Confidence 236788999998875443 345888898888887642 23333333 348888886554
No 22
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=97.93 E-value=0.00021 Score=66.50 Aligned_cols=139 Identities=19% Similarity=0.324 Sum_probs=94.0
Q ss_pred EEEEeeccEEEeeeEEecCCCCCCCcEEEcCCCceEEEEeeeeec-----CCCCeeEeeeCCccEEEeccEEccCCceee
Q 024841 97 LRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRD-----YDDGLIDITRQSTDITVSRCYFTQHDKTML 171 (262)
Q Consensus 97 i~i~~a~NVIIrnl~i~~~~~~~~D~I~i~~~~~nVwIDHcs~s~-----~~Dg~id~~~~s~nvTIS~~~f~~h~~~~l 171 (262)
|.+..++|+.|++|+++....|. +.+. .+++|+|+|+++.. ..|| +|+ ..+.+|+|.+|.|...+-+.-
T Consensus 95 i~~~~~~~~~i~~i~~~nsp~w~---~~~~-~~~nv~i~~i~I~~~~~~~NtDG-id~-~~s~nv~I~n~~i~~gDD~Ia 168 (326)
T PF00295_consen 95 IRFNNCKNVTIEGITIRNSPFWH---IHIN-DCDNVTISNITINNPANSPNTDG-IDI-DSSKNVTIENCFIDNGDDCIA 168 (326)
T ss_dssp EEEEEEEEEEEESEEEES-SSES---EEEE-SEEEEEEESEEEEEGGGCTS--S-EEE-ESEEEEEEESEEEESSSESEE
T ss_pred eeeeeecceEEEeeEecCCCeeE---EEEE-ccCCeEEcceEEEecCCCCCcce-EEE-EeeeEEEEEEeecccccCccc
Confidence 78888999999999999887663 6776 78999999999964 3688 788 468999999999998777766
Q ss_pred ecCCCCCCCCcceEEEEeceeecCCCCCCCccc---cC-------eEEEEcceEEcCcceeEEe--c--cC---ceEEEE
Q 024841 172 IGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLR---FG-------KVHLYNNYTRNWGIYAVCA--S--VE---SQIYSQ 234 (262)
Q Consensus 172 ~G~~d~~~~d~~~~vT~hhN~f~~~~~R~Pr~r---~G-------~~hv~NN~~~n~~~~~~~~--~--~~---a~v~~e 234 (262)
+.+... +|++.++++.+... =.+. .+ .+.+.|+.+.+.. +++.. . .+ ..|.+|
T Consensus 169 iks~~~-------ni~v~n~~~~~ghG--isiGS~~~~~~~~~i~nV~~~n~~i~~t~-~gi~iKt~~~~~G~v~nI~f~ 238 (326)
T PF00295_consen 169 IKSGSG-------NILVENCTCSGGHG--ISIGSEGSGGSQNDIRNVTFENCTIINTD-NGIRIKTWPGGGGYVSNITFE 238 (326)
T ss_dssp ESSEEC-------EEEEESEEEESSSE--EEEEEESSSSE--EEEEEEEEEEEEESES-EEEEEEEETTTSEEEEEEEEE
T ss_pred cccccc-------ceEEEeEEEecccc--ceeeeccCCccccEEEeEEEEEEEeeccc-eEEEEEEecccceEEeceEEE
Confidence 654321 68888888866433 1111 11 3455666665532 44432 1 11 357778
Q ss_pred ceEEecCCcceeE--eeec
Q 024841 235 CNIYEAGQKKRTF--EYYT 251 (262)
Q Consensus 235 ~N~F~~~~~~~~~--~~~~ 251 (262)
+...++...|..+ .|.+
T Consensus 239 ni~~~~v~~pi~i~~~y~~ 257 (326)
T PF00295_consen 239 NITMENVKYPIFIDQDYRD 257 (326)
T ss_dssp EEEEEEESEEEEEEEEECT
T ss_pred EEEecCCceEEEEEecccc
Confidence 8877777776554 3444
No 23
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=97.91 E-value=0.00024 Score=57.14 Aligned_cols=129 Identities=18% Similarity=0.188 Sum_probs=76.5
Q ss_pred cEEEEeeccEEEeeeEEecCCCCCCCcEEEcCCCceEEEEeeeeecCCCCeeEeeeCCccEEEeccEEccCCc-eeeecC
Q 024841 96 GLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDK-TMLIGA 174 (262)
Q Consensus 96 gi~i~~a~NVIIrnl~i~~~~~~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~id~~~~s~nvTIS~~~f~~h~~-~~l~G~ 174 (262)
+|.+....++.|++-+|.. ...+|.+. ...++.++.|.|+... ..+.+ ..+..++|++|.|.+... +..+..
T Consensus 25 gi~~~~~~~~~i~n~~i~~----~~~gi~~~-~~~~~~i~~~~~~~~~-~~i~~-~~~~~~~i~~~~i~~~~~~gi~~~~ 97 (158)
T PF13229_consen 25 GIHVSGSSNITIENCTISN----GGYGIYVS-GGSNVTISNNTISDNG-SGIYV-SGSSNITIENNRIENNGDYGIYISN 97 (158)
T ss_dssp CEEE-SSCESEEES-EEES----STTSEEEE-CCES-EEES-EEES-S-EEEEC-CS-CS-EEES-EEECSSS-SCE-TC
T ss_pred EEEEEcCCCeEEECeEEEC----CCcEEEEe-cCCCeEEECeEEEEcc-ceEEE-EecCCceecCcEEEcCCCccEEEec
Confidence 5777767777888888887 45778886 5678888888888877 33445 367788888888887654 444432
Q ss_pred CCCCCCCcceEEEEeceeecCCCCCCCcccc-C--eEEEEcceEEcCcceeEEeccCce-EEEEceEE
Q 024841 175 DPSHVGDRCIRVTIHHCLFDGTRQRHPRLRF-G--KVHLYNNYTRNWGIYAVCASVESQ-IYSQCNIY 238 (262)
Q Consensus 175 ~d~~~~d~~~~vT~hhN~f~~~~~R~Pr~r~-G--~~hv~NN~~~n~~~~~~~~~~~a~-v~~e~N~F 238 (262)
....+++.+|.|.++....=.+.. . .+-+.+|.+.+...+++.....+. +.+.+|.|
T Consensus 98 -------~~~~~~i~~n~~~~~~~~gi~~~~~~~~~~~i~~n~i~~~~~~gi~~~~~~~~~~v~~n~~ 158 (158)
T PF13229_consen 98 -------SSSNVTIENNTIHNNGGSGIYLEGGSSPNVTIENNTISNNGGNGIYLISGSSNCTVTNNTF 158 (158)
T ss_dssp -------EECS-EEES-EEECCTTSSCEEEECC--S-EEECEEEECESSEEEE-TT-SS--EEES-E-
T ss_pred -------cCCCEEEEeEEEEeCcceeEEEECCCCCeEEEEEEEEEeCcceeEEEECCCCeEEEECCCC
Confidence 012478888888877744333332 2 567788888887777886665555 77888876
No 24
>PLN02155 polygalacturonase
Probab=97.89 E-value=0.00094 Score=63.96 Aligned_cols=137 Identities=12% Similarity=0.143 Sum_probs=93.1
Q ss_pred EEEEeeccEEEeeeEEecCCCCCCCcEEEcCCCceEEEEeeeeec-----CCCCeeEeeeCCccEEEeccEEccCCceee
Q 024841 97 LRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRD-----YDDGLIDITRQSTDITVSRCYFTQHDKTML 171 (262)
Q Consensus 97 i~i~~a~NVIIrnl~i~~~~~~~~D~I~i~~~~~nVwIDHcs~s~-----~~Dg~id~~~~s~nvTIS~~~f~~h~~~~l 171 (262)
|.+..++||.|++|+++....|. +.+. .+++|.|+++++.. ..|| +|+ ..+++|+|++|.|...+-+..
T Consensus 148 i~~~~~~nv~i~gitl~nSp~w~---i~~~-~~~nv~i~~v~I~~p~~~~NtDG-idi-~~s~nV~I~~~~I~~gDDcIa 221 (394)
T PLN02155 148 ISFNSAKDVIISGVKSMNSQVSH---MTLN-GCTNVVVRNVKLVAPGNSPNTDG-FHV-QFSTGVTFTGSTVQTGDDCVA 221 (394)
T ss_pred eeEEEeeeEEEECeEEEcCCCeE---EEEE-CeeeEEEEEEEEECCCCCCCCCc-ccc-ccceeEEEEeeEEecCCceEE
Confidence 56778999999999999876543 5665 78999999999964 3588 788 568999999999998887777
Q ss_pred ecCCCCCCCCcceEEEEeceeecCC-------CCCCCcc-ccCeEEEEcceEEcCcceeEEe----c-cC---ceEEEEc
Q 024841 172 IGADPSHVGDRCIRVTIHHCLFDGT-------RQRHPRL-RFGKVHLYNNYTRNWGIYAVCA----S-VE---SQIYSQC 235 (262)
Q Consensus 172 ~G~~d~~~~d~~~~vT~hhN~f~~~-------~~R~Pr~-r~G~~hv~NN~~~n~~~~~~~~----~-~~---a~v~~e~ 235 (262)
++++.+ +|++.++.+... ..+.|.. ..-.+.+.|+.+.+.. +++.. + .+ ..|.+++
T Consensus 222 ik~gs~-------nI~I~n~~c~~GhGisIGS~g~~~~~~~V~nV~v~n~~~~~t~-~GirIKT~~~~~gG~v~nI~f~n 293 (394)
T PLN02155 222 IGPGTR-------NFLITKLACGPGHGVSIGSLAKELNEDGVENVTVSSSVFTGSQ-NGVRIKSWARPSTGFVRNVFFQD 293 (394)
T ss_pred cCCCCc-------eEEEEEEEEECCceEEeccccccCCCCcEEEEEEEeeEEeCCC-cEEEEEEecCCCCEEEEEEEEEe
Confidence 765422 577776666431 1222210 1125677888887643 34432 1 11 2467777
Q ss_pred eEEecCCcceeE
Q 024841 236 NIYEAGQKKRTF 247 (262)
Q Consensus 236 N~F~~~~~~~~~ 247 (262)
-.+++...|..+
T Consensus 294 i~m~~v~~pI~i 305 (394)
T PLN02155 294 LVMKNVENPIII 305 (394)
T ss_pred EEEcCccccEEE
Confidence 777777777665
No 25
>PLN02197 pectinesterase
Probab=97.87 E-value=0.0027 Score=63.67 Aligned_cols=104 Identities=19% Similarity=0.340 Sum_probs=70.7
Q ss_pred CCCCCCh---hHHHHhhc----CCCeEEEEEeeeEEEecceEEec---CCeEEEeeccceEEe-c-------Cc------
Q 024841 41 LSDDGPG---SLREGCRR----REPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIKLT-G-------KG------ 96 (262)
Q Consensus 41 l~dsg~G---sLr~al~~----~~pr~Ivf~vsG~I~l~~~i~i~---sn~TI~G~g~~~~i~-G-------~g------ 96 (262)
.+.+|.| ++++||++ +..|+||+-..|++. +.+.|. +|+||.|.|.+-++. + .+
T Consensus 279 Va~dGsG~f~TIq~Ai~a~P~~~~~r~vI~Ik~GvY~--E~V~I~~~k~ni~l~G~g~~~TiIt~~~~~~~~~g~~T~~S 356 (588)
T PLN02197 279 VAKDGSGQFKTISQAVMACPDKNPGRCIIHIKAGIYN--EQVTIPKKKNNIFMFGDGARKTVISYNRSVKLSPGTTTSLS 356 (588)
T ss_pred EcCCCCCCcCCHHHHHHhccccCCceEEEEEeCceEE--EEEEccCCCceEEEEEcCCCCeEEEeccccccCCCCcccce
Confidence 4556665 88999965 234666666789984 667774 689999987654443 1 11
Q ss_pred --EEEEeeccEEEeeeEEecCCCC-CCCcEEEcCCCceEEEEeeeeecCCCCee
Q 024841 97 --LRLKECEHVIICNLEFEGGRGH-DVDGIQIKPNSRHIWIDRCSLRDYDDGLI 147 (262)
Q Consensus 97 --i~i~~a~NVIIrnl~i~~~~~~-~~D~I~i~~~~~nVwIDHcs~s~~~Dg~i 147 (262)
+.+ .+++++.|||+|++.... ..-|+.++-.++..-+.+|.|....|-++
T Consensus 357 aT~~v-~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~GyQDTLy 409 (588)
T PLN02197 357 GTVQV-ESEGFMAKWIGFKNTAGPMGHQAVAIRVNGDRAVIFNCRFDGYQDTLY 409 (588)
T ss_pred eEEEE-ECCcEEEEEeEEEeCCCCCCCceEEEEecCCcEEEEEeEEEecCcceE
Confidence 344 489999999999986532 22444444357899999999986655544
No 26
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=97.79 E-value=0.0018 Score=62.16 Aligned_cols=138 Identities=12% Similarity=0.138 Sum_probs=94.9
Q ss_pred EEEEeeccEEEeeeEEecCCCCCCCcEEEcCCCceEEEEeeeeec-----CCCCeeEeeeCCccEEEeccEEccCCceee
Q 024841 97 LRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRD-----YDDGLIDITRQSTDITVSRCYFTQHDKTML 171 (262)
Q Consensus 97 i~i~~a~NVIIrnl~i~~~~~~~~D~I~i~~~~~nVwIDHcs~s~-----~~Dg~id~~~~s~nvTIS~~~f~~h~~~~l 171 (262)
|.+..++||.|++|++++...|. +.+. .+++|.|++.++.. ..|| +|+ ..+++|+|.+|.|...+-+.-
T Consensus 158 i~f~~~~nv~i~gitl~nSp~w~---i~~~-~~~~v~i~~v~I~~~~~spNtDG-idi-~~s~nV~I~n~~I~~GDDcIa 231 (404)
T PLN02188 158 VKFVNMNNTVVRGITSVNSKFFH---IALV-ECRNFKGSGLKISAPSDSPNTDG-IHI-ERSSGVYISDSRIGTGDDCIS 231 (404)
T ss_pred EEEEeeeeEEEeCeEEEcCCCeE---EEEE-ccccEEEEEEEEeCCCCCCCCCc-Eee-eCcccEEEEeeEEeCCCcEEE
Confidence 45667999999999999876553 5666 78999999999874 4688 788 578999999999999888888
Q ss_pred ecCCCCCCCCcceEEEEeceeecCCCC-------CCCcc-ccCeEEEEcceEEcCcceeEEe-------c--cCceEEEE
Q 024841 172 IGADPSHVGDRCIRVTIHHCLFDGTRQ-------RHPRL-RFGKVHLYNNYTRNWGIYAVCA-------S--VESQIYSQ 234 (262)
Q Consensus 172 ~G~~d~~~~d~~~~vT~hhN~f~~~~~-------R~Pr~-r~G~~hv~NN~~~n~~~~~~~~-------~--~~a~v~~e 234 (262)
+.++.. +|++-++...+... +.+.. ....+.+.|+.+.+.. +++.. + .=..|.+|
T Consensus 232 iksg~~-------nI~I~n~~c~~ghGisiGSlG~~~~~~~V~nV~v~n~~~~~t~-~GiriKt~~g~~~~G~v~nI~f~ 303 (404)
T PLN02188 232 IGQGNS-------QVTITRIRCGPGHGISVGSLGRYPNEGDVTGLVVRDCTFTGTT-NGIRIKTWANSPGKSAATNMTFE 303 (404)
T ss_pred EccCCc-------cEEEEEEEEcCCCcEEeCCCCCCCcCCcEEEEEEEeeEEECCC-cEEEEEEecCCCCceEEEEEEEE
Confidence 864421 57776665543211 10000 0124567888887743 24432 1 11367888
Q ss_pred ceEEecCCcceeEe
Q 024841 235 CNIYEAGQKKRTFE 248 (262)
Q Consensus 235 ~N~F~~~~~~~~~~ 248 (262)
+-.+++...|..++
T Consensus 304 ni~m~~v~~pI~i~ 317 (404)
T PLN02188 304 NIVMNNVTNPIIID 317 (404)
T ss_pred eEEecCccceEEEE
Confidence 88888888887764
No 27
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=97.79 E-value=0.0016 Score=57.21 Aligned_cols=107 Identities=18% Similarity=0.168 Sum_probs=73.4
Q ss_pred cEEEEeeccEEEeeeEEecCCCCCCCcEEEcCCCceEEEEeeeeecCCCCeeEeeeCCccEEEeccEEccCCceeeecCC
Q 024841 96 GLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGAD 175 (262)
Q Consensus 96 gi~i~~a~NVIIrnl~i~~~~~~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~id~~~~s~nvTIS~~~f~~h~~~~l~G~~ 175 (262)
||.+..+++++|++-.+... ..||.+. .+.+..|..|.|+....|. .+ ..+.+.+|++|.|.+...+..+-.+
T Consensus 59 GI~~~~s~~~~i~~n~i~~n----~~Gi~l~-~s~~~~I~~N~i~~n~~GI-~l-~~s~~~~I~~N~i~~~~~GI~l~~s 131 (236)
T PF05048_consen 59 GIHLMGSSNNTIENNTISNN----GYGIYLM-GSSNNTISNNTISNNGYGI-YL-YGSSNNTISNNTISNNGYGIYLSSS 131 (236)
T ss_pred EEEEEccCCCEEEeEEEEcc----CCCEEEE-cCCCcEEECCEecCCCceE-EE-eeCCceEEECcEEeCCCEEEEEEeC
Confidence 56777777777787777754 2778886 5555688888888877764 44 3467788888888877777766543
Q ss_pred CCCCCCcceEEEEeceeecCCCCCCCc-ccc-CeEEEEcceEEc
Q 024841 176 PSHVGDRCIRVTIHHCLFDGTRQRHPR-LRF-GKVHLYNNYTRN 217 (262)
Q Consensus 176 d~~~~d~~~~vT~hhN~f~~~~~R~Pr-~r~-G~~hv~NN~~~n 217 (262)
. +.++.+|.|.++..---. +.. ....+++|.|.|
T Consensus 132 ~--------~n~I~~N~i~~n~~~Gi~~~~~s~~n~I~~N~f~N 167 (236)
T PF05048_consen 132 S--------NNTITGNTISNNTDYGIYFLSGSSGNTIYNNNFNN 167 (236)
T ss_pred C--------CCEEECeEEeCCCccceEEeccCCCCEEECCCccC
Confidence 2 468888888887443333 222 356888888844
No 28
>PLN02480 Probable pectinesterase
Probab=97.79 E-value=0.0043 Score=58.39 Aligned_cols=103 Identities=11% Similarity=0.227 Sum_probs=70.6
Q ss_pred CCCCCh---hHHHHhhcC----CCeEEEEEeeeEEEecceEEe---cCCeEEEeeccc-eEEecC----------cEEEE
Q 024841 42 SDDGPG---SLREGCRRR----EPLWIVFEVSGTIHLSSYLSV---SSYKTIDGRGQR-IKLTGK----------GLRLK 100 (262)
Q Consensus 42 ~dsg~G---sLr~al~~~----~pr~Ivf~vsG~I~l~~~i~i---~sn~TI~G~g~~-~~i~G~----------gi~i~ 100 (262)
+.+|.| ++++||++. ..+++|+-..|+.. +.+.| ++|+||.|.+.. ..|.+. .|.|.
T Consensus 53 a~~G~g~f~TIQ~AIdaap~~~~~~~~I~Ik~GvY~--E~V~I~~~kp~ItL~G~g~~~TvI~~~~~~~~~~~saTvtV~ 130 (343)
T PLN02480 53 DINGKGDFTSVQSAIDAVPVGNSEWIIVHLRKGVYR--EKVHIPENKPFIFMRGNGKGRTSIVWSQSSSDNAASATFTVE 130 (343)
T ss_pred CCCCCCCcccHHHHHhhCccCCCceEEEEEcCcEEE--EEEEECCCCceEEEEecCCCCeEEEccccccCCCCceEEEEE
Confidence 344544 899999753 23566666789984 77888 467999998743 334321 25564
Q ss_pred eeccEEEeeeEEecCCC------CCCCcEEEcCCCceEEEEeeeeecCCCCee
Q 024841 101 ECEHVIICNLEFEGGRG------HDVDGIQIKPNSRHIWIDRCSLRDYDDGLI 147 (262)
Q Consensus 101 ~a~NVIIrnl~i~~~~~------~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~i 147 (262)
+++++++||+|++... ...-|+.+.-.++++.+.+|.|....|-++
T Consensus 131 -a~~f~a~nLTf~Nta~~g~~~~~~~QAVAl~v~gDra~f~~c~f~G~QDTLy 182 (343)
T PLN02480 131 -APHFVAFGISIRNDAPTGMAFTSENQSVAAFVGADKVAFYHCAFYSTHNTLF 182 (343)
T ss_pred -CCCEEEEeeEEEecCCCCCCCCCCCceEEEEecCCcEEEEeeEEecccceeE
Confidence 8999999999998632 123456664467899999999976666554
No 29
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=97.77 E-value=0.0014 Score=57.74 Aligned_cols=130 Identities=15% Similarity=0.135 Sum_probs=96.8
Q ss_pred cCcEEEEeeccEEEeeeEEecCCCCCCCcEEEcCCCceEEEEeeeeecCCCCeeEeeeCCccEEEeccEEccCCceeeec
Q 024841 94 GKGLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIG 173 (262)
Q Consensus 94 G~gi~i~~a~NVIIrnl~i~~~~~~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~id~~~~s~nvTIS~~~f~~h~~~~l~G 173 (262)
..++.+..+.++.|++.+|... ..||.+. .++++-|..|.++....|. .+.. +.+.+|++|.|.+...+.++.
T Consensus 35 ~~gi~~~~s~~~~I~~n~i~~~----~~GI~~~-~s~~~~i~~n~i~~n~~Gi-~l~~-s~~~~I~~N~i~~n~~GI~l~ 107 (236)
T PF05048_consen 35 RDGIYVENSDNNTISNNTISNN----RYGIHLM-GSSNNTIENNTISNNGYGI-YLMG-SSNNTISNNTISNNGYGIYLY 107 (236)
T ss_pred CCEEEEEEcCCeEEEeeEEECC----CeEEEEE-ccCCCEEEeEEEEccCCCE-EEEc-CCCcEEECCEecCCCceEEEe
Confidence 3456777899999999999975 5778887 6788999999999988884 4533 445599999999887777665
Q ss_pred CCCCCCCCcceEEEEeceeecCCCCCCCcccc-CeEEEEcceEEcCcceeEE-eccCceEEEEceEEe
Q 024841 174 ADPSHVGDRCIRVTIHHCLFDGTRQRHPRLRF-GKVHLYNNYTRNWGIYAVC-ASVESQIYSQCNIYE 239 (262)
Q Consensus 174 ~~d~~~~d~~~~vT~hhN~f~~~~~R~Pr~r~-G~~hv~NN~~~n~~~~~~~-~~~~a~v~~e~N~F~ 239 (262)
.+. ..++.+|.+. ....--.+.. ....+.+|.+.+...+++. ........+.+|+|.
T Consensus 108 ~s~--------~~~I~~N~i~-~~~~GI~l~~s~~n~I~~N~i~~n~~~Gi~~~~~s~~n~I~~N~f~ 166 (236)
T PF05048_consen 108 GSS--------NNTISNNTIS-NNGYGIYLSSSSNNTITGNTISNNTDYGIYFLSGSSGNTIYNNNFN 166 (236)
T ss_pred eCC--------ceEEECcEEe-CCCEEEEEEeCCCCEEECeEEeCCCccceEEeccCCCCEEECCCcc
Confidence 433 3688888887 3333333333 4678899999887667888 555666788999993
No 30
>PLN02176 putative pectinesterase
Probab=97.67 E-value=0.0013 Score=61.81 Aligned_cols=103 Identities=12% Similarity=0.237 Sum_probs=69.6
Q ss_pred CCCCCh---hHHHHhhc----CCCeEEEEEeeeEEEecceEEec---CCeEEEeeccceEEe--cC--------cEEEEe
Q 024841 42 SDDGPG---SLREGCRR----REPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIKLT--GK--------GLRLKE 101 (262)
Q Consensus 42 ~dsg~G---sLr~al~~----~~pr~Ivf~vsG~I~l~~~i~i~---sn~TI~G~g~~~~i~--G~--------gi~i~~ 101 (262)
+.+|.| +.++||++ +..+++|+-..|+.. +.+.|. +|+||.|.|..-++. +. .+.+ .
T Consensus 44 a~dGsGdf~TIq~AIdavP~~~~~~~~I~Ik~GvY~--EkV~Ip~~k~~vtl~G~g~~~TiIt~~~~~~t~~saT~~v-~ 120 (340)
T PLN02176 44 NPNDARYFKTVQSAIDSIPLQNQNWIRILIQNGIYR--EKVTIPKEKGYIYMQGKGIEKTIIAYGDHQATDTSATFTS-Y 120 (340)
T ss_pred CCCCCCCccCHHHHHhhchhcCCceEEEEECCcEEE--EEEEECCCCccEEEEEcCCCceEEEEeCCcccccceEEEE-E
Confidence 455555 89999964 223556666789994 677773 689999997654443 11 2555 4
Q ss_pred eccEEEeeeEEecCCC-------CCCCcEEEcCCCceEEEEeeeeecCCCCee
Q 024841 102 CEHVIICNLEFEGGRG-------HDVDGIQIKPNSRHIWIDRCSLRDYDDGLI 147 (262)
Q Consensus 102 a~NVIIrnl~i~~~~~-------~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~i 147 (262)
+++++.+||+|++... ...-|+.+.-.++++-+.+|.|....|-++
T Consensus 121 a~~F~a~nlT~~Nt~~~~~~~~~~~~QAVAl~v~gDr~~f~~C~f~G~QDTLy 173 (340)
T PLN02176 121 ASNIIITGITFKNTYNIASNSSRPTKPAVAARMLGDKYAIIDSSFDGFQDTLF 173 (340)
T ss_pred CCCEEEEeeEEEeCCCccCCCCCCccceEEEEecCccEEEEccEEecccceeE
Confidence 8999999999997642 112344444357889999999976555544
No 31
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=97.66 E-value=0.0051 Score=55.33 Aligned_cols=187 Identities=17% Similarity=0.192 Sum_probs=114.1
Q ss_pred hhHHHHhhcCCCeEEEEEeeeEEEecc----eEEecCCeEEEee----cc----------ceEEecCc-------EEEEe
Q 024841 47 GSLREGCRRREPLWIVFEVSGTIHLSS----YLSVSSYKTIDGR----GQ----------RIKLTGKG-------LRLKE 101 (262)
Q Consensus 47 GsLr~al~~~~pr~Ivf~vsG~I~l~~----~i~i~sn~TI~G~----g~----------~~~i~G~g-------i~i~~ 101 (262)
-+|.+|++...|..+|.--.|++.-.. ||.+++.+||.|. |. +..|.|.+ +.|..
T Consensus 16 ~Ti~~A~~~a~~g~~i~l~~GtY~~~~ge~fPi~i~~gVtl~G~~~~kG~~~il~~g~~~~~~I~g~~~~~~~qn~tI~~ 95 (246)
T PF07602_consen 16 KTITKALQAAQPGDTIQLAPGTYSEATGETFPIIIKPGVTLIGNESNKGQIDILITGGGTGPTISGGGPDLSGQNVTIIL 95 (246)
T ss_pred HHHHHHHHhCCCCCEEEECCceeccccCCcccEEecCCeEEeecccCCCcceEEecCCceEEeEeccCccccceeEEEEe
Confidence 468889988877777766789987543 6888899999985 22 22344433 44555
Q ss_pred eccEEEeeeEEecCCCCCCCcEEEcCCCceEEEEeeeeecC-CCCeeEee----eCCccEEEeccEEccCCceeeecCCC
Q 024841 102 CEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDY-DDGLIDIT----RQSTDITVSRCYFTQHDKTMLIGADP 176 (262)
Q Consensus 102 a~NVIIrnl~i~~~~~~~~D~I~i~~~~~nVwIDHcs~s~~-~Dg~id~~----~~s~nvTIS~~~f~~h~~~~l~G~~d 176 (262)
+++..|+.++|+......+-||.++ .+ +.-|.+|+|... .+|..... ....+.+|+.|.+.....+.-+-...
T Consensus 96 ~~~~~i~GvtItN~n~~~g~Gi~Ie-ss-~~tI~Nntf~~~~~~GI~v~g~~~~~~i~~~vI~GN~~~~~~~Gi~i~~~~ 173 (246)
T PF07602_consen 96 ANNATISGVTITNPNIARGTGIWIE-SS-SPTIANNTFTNNGREGIFVTGTSANPGINGNVISGNSIYFNKTGISISDNA 173 (246)
T ss_pred cCCCEEEEEEEEcCCCCcceEEEEe-cC-CcEEEeeEEECCccccEEEEeeecCCcccceEeecceEEecCcCeEEEccc
Confidence 7888899999998754456788886 44 788899999985 46643221 12356778888776554444332111
Q ss_pred CCCCCcceEEEEeceeecCCCC------CCCccccC-eEEEEcceEEcCcceeEEec--cCceEEEEceEEec
Q 024841 177 SHVGDRCIRVTIHHCLFDGTRQ------RHPRLRFG-KVHLYNNYTRNWGIYAVCAS--VESQIYSQCNIYEA 240 (262)
Q Consensus 177 ~~~~d~~~~vT~hhN~f~~~~~------R~Pr~r~G-~~hv~NN~~~n~~~~~~~~~--~~a~v~~e~N~F~~ 240 (262)
... ...+-+|++.++.. ..|-+..+ ....-||.+.+.+.|.+... ..-.+++.+|-...
T Consensus 174 ~~~-----~n~I~NN~I~~N~~Gi~~~~~~pDlG~~s~~~~g~N~~~~N~~~Dl~~~~~~~~~l~a~gN~ld~ 241 (246)
T PF07602_consen 174 APV-----ENKIENNIIENNNIGIVAIGDAPDLGTGSEGSPGNNIFRNNGRYDLNNSATPGQTLYAVGNQLDH 241 (246)
T ss_pred CCc-----cceeeccEEEeCCcCeEeeccCCccccCCCCCCCCcEEecCcceeeEeccCCceeEEEeCCccCC
Confidence 111 12334566654332 11334332 22466788887777777652 22467777776553
No 32
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=97.46 E-value=0.015 Score=57.66 Aligned_cols=171 Identities=18% Similarity=0.373 Sum_probs=100.5
Q ss_pred CCCCCh---hHHHHhhcC-----CCeEEEEEeeeEEEecceEEe---cCCeEEEeeccceEEe-c-----Cc--------
Q 024841 42 SDDGPG---SLREGCRRR-----EPLWIVFEVSGTIHLSSYLSV---SSYKTIDGRGQRIKLT-G-----KG-------- 96 (262)
Q Consensus 42 ~dsg~G---sLr~al~~~-----~pr~Ivf~vsG~I~l~~~i~i---~sn~TI~G~g~~~~i~-G-----~g-------- 96 (262)
+.+|.| +.++||++. ..|++|+-..|+.. +.+.| .+|+||.|.|.+-|+. + .+
T Consensus 230 a~dGsG~f~TIq~AI~a~~~~~~~~r~vI~Ik~GvY~--E~V~I~~~k~nItl~G~g~~~TiIt~~~~~~~g~~T~~SaT 307 (529)
T PLN02170 230 AADGSGTHKTIGEALLSTSLESGGGRTVIYLKAGTYH--ENLNIPTKQKNVMLVGDGKGKTVIVGSRSNRGGWTTYQTAT 307 (529)
T ss_pred cCCCCCchhhHHHHHHhcccccCCceEEEEEeCCeeE--EEEecCCCCceEEEEEcCCCCeEEEeCCcCCCCCccccceE
Confidence 455655 788999732 23667776789984 66777 3799999997655543 2 11
Q ss_pred EEEEeeccEEEeeeEEecCCCC-CCCcEEEcCCCceEEEEeeeeecCCCCee-----------------EeeeCCccEEE
Q 024841 97 LRLKECEHVIICNLEFEGGRGH-DVDGIQIKPNSRHIWIDRCSLRDYDDGLI-----------------DITRQSTDITV 158 (262)
Q Consensus 97 i~i~~a~NVIIrnl~i~~~~~~-~~D~I~i~~~~~nVwIDHcs~s~~~Dg~i-----------------d~~~~s~nvTI 158 (262)
+.+ .+++++.|||+|++.... ..-|+.++-.++...+.+|.|....|-++ |.--+....-+
T Consensus 308 v~v-~~~~F~a~nitf~Ntag~~~~QAVALrv~gDr~~fy~C~f~GyQDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~avF 386 (529)
T PLN02170 308 VAA-MGDGFIARDITFVNSAGPNSEQAVALRVGSDKSVVYRCSVEGYQDSLYTHSKRQFYRETDITGTVDFIFGNSAVVF 386 (529)
T ss_pred EEE-EcCCeEEEeeEEEecCCCCCCceEEEEecCCcEEEEeeeEeccCCcceeCCCCEEEEeeEEccccceecccceEEE
Confidence 344 489999999999987532 22344444357889999999976555443 33333345566
Q ss_pred eccEEccCC----ceeeecCCCCCCCCcceEEEEeceeecCCC----CCCCccccCeEEEEcceEEc
Q 024841 159 SRCYFTQHD----KTMLIGADPSHVGDRCIRVTIHHCLFDGTR----QRHPRLRFGKVHLYNNYTRN 217 (262)
Q Consensus 159 S~~~f~~h~----~~~l~G~~d~~~~d~~~~vT~hhN~f~~~~----~R~Pr~r~G~~hv~NN~~~n 217 (262)
++|.|.... .+.+--.+.. ..+...-..||+|.+.... +| |.-.+.++-+.|.++..
T Consensus 387 q~C~I~~~~~~~~~g~ITAq~R~-~~~~~~Gfvf~~C~it~~~~~yLGR-PW~~ysrvVf~~t~l~~ 451 (529)
T PLN02170 387 QSCNIAARKPSGDRNYVTAQGRS-DPNQNTGISIHNCRITAESMTYLGR-PWKEYSRTVVMQSFIDG 451 (529)
T ss_pred eccEEEEecCCCCceEEEecCCC-CCCCCceEEEEeeEEecCCceeeeC-CCCCCceEEEEecccCC
Confidence 677665321 1222111100 0111234788888875532 22 22224566677776643
No 33
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=97.39 E-value=0.004 Score=60.24 Aligned_cols=165 Identities=18% Similarity=0.216 Sum_probs=93.4
Q ss_pred CCeEEEee-----ccceEEecCcEEEEeeccEEEeeeEEecCCCC-------------------CCCcEEEcCCCceEEE
Q 024841 79 SYKTIDGR-----GQRIKLTGKGLRLKECEHVIICNLEFEGGRGH-------------------DVDGIQIKPNSRHIWI 134 (262)
Q Consensus 79 sn~TI~G~-----g~~~~i~G~gi~i~~a~NVIIrnl~i~~~~~~-------------------~~D~I~i~~~~~nVwI 134 (262)
+++||.|. |....-...+|.++.|+++.|++.+|++...+ ...+|.+. .++++.|
T Consensus 115 ~nVTIsGLtIdGsG~dl~~rdAgI~v~~a~~v~Iedn~L~gsg~FGI~L~~~~~~I~~N~I~g~~~~~I~lw-~S~g~~V 193 (455)
T TIGR03808 115 DGIGLSGLTLDGGGIPLPQRRGLIHCQGGRDVRITDCEITGSGGNGIWLETVSGDISGNTITQIAVTAIVSF-DALGLIV 193 (455)
T ss_pred CCeEEEeeEEEeCCCcccCCCCEEEEccCCceEEEeeEEEcCCcceEEEEcCcceEecceEeccccceEEEe-ccCCCEE
Confidence 56666654 33222223357778899999999999976310 12234554 5668888
Q ss_pred EeeeeecCCCCeeEeee-----------------------------------CCccEEEeccEEccCCceeeecCCCCCC
Q 024841 135 DRCSLRDYDDGLIDITR-----------------------------------QSTDITVSRCYFTQHDKTMLIGADPSHV 179 (262)
Q Consensus 135 DHcs~s~~~Dg~id~~~-----------------------------------~s~nvTIS~~~f~~h~~~~l~G~~d~~~ 179 (262)
.+++++...|..+-+.+ .+.+++|+.|.++++.+..+.+.+.+..
T Consensus 194 ~~N~I~g~RD~gi~i~r~~~~~dg~~v~~n~i~~i~a~~gg~~~~GNGI~~~~a~~v~V~gN~I~~~r~dgI~~nsss~~ 273 (455)
T TIGR03808 194 ARNTIIGANDNGIEILRSAIGDDGTIVTDNRIEDIKAGPGGSGQYGNAINAFRAGNVIVRGNRIRNCDYSAVRGNSASNI 273 (455)
T ss_pred ECCEEEccCCCCeEEEEeeecCCcceeeccccccccccCCCcCCccccEEEEccCCeEEECCEEeccccceEEEEcccCc
Confidence 88888877764333321 2468888888888877544443322221
Q ss_pred -------CC-c--ceEE--EEeceeecCCCCCCCccc-----c---CeE-EEEcceEEcCc-----------ceeEEecc
Q 024841 180 -------GD-R--CIRV--TIHHCLFDGTRQRHPRLR-----F---GKV-HLYNNYTRNWG-----------IYAVCASV 227 (262)
Q Consensus 180 -------~d-~--~~~v--T~hhN~f~~~~~R~Pr~r-----~---G~~-hv~NN~~~n~~-----------~~~~~~~~ 227 (262)
.+ | .++. +++.+.+.+|....-... | |+. .+..|++.|.. ..+++...
T Consensus 274 ~i~~N~~~~~R~~alhymfs~~g~~i~~N~~~g~~~G~av~nf~~ggr~~~~~gn~irn~~~~~p~~~~~~~~~g~gi~~ 353 (455)
T TIGR03808 274 QITGNSVSDVREVALYSEFAFEGAVIANNTVDGAAVGVSVCNFNEGGRLAVVQGNIIRNLIPKRPIGTAPDDDAGIGIYV 353 (455)
T ss_pred EEECcEeeeeeeeEEEEEEeCCCcEEeccEEecCcceEEEEeecCCceEEEEecceeeccccCCCCCCCCCCCCceeEEE
Confidence 01 1 1121 222255555554444432 1 443 45667666521 23566666
Q ss_pred CceEEEEceEEecCCcc
Q 024841 228 ESQIYSQCNIYEAGQKK 244 (262)
Q Consensus 228 ~a~v~~e~N~F~~~~~~ 244 (262)
+|.-.+-+|+-|+.|.-
T Consensus 354 ead~~~~~n~~e~ap~~ 370 (455)
T TIGR03808 354 EADTAVTGNVVENAPSF 370 (455)
T ss_pred EecceeccceecCCcce
Confidence 77667778888877653
No 34
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=97.38 E-value=0.019 Score=57.29 Aligned_cols=170 Identities=16% Similarity=0.388 Sum_probs=101.3
Q ss_pred CCCCCh---hHHHHhhc----CCCeEEEEEeeeEEEecceEEec---CCeEEEeeccceEEe-cC-------c------E
Q 024841 42 SDDGPG---SLREGCRR----REPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIKLT-GK-------G------L 97 (262)
Q Consensus 42 ~dsg~G---sLr~al~~----~~pr~Ivf~vsG~I~l~~~i~i~---sn~TI~G~g~~~~i~-G~-------g------i 97 (262)
+.+|.| +.++||++ ...|.||+-..|+. .+.+.|. +|+||.|.|.+.++. +. + +
T Consensus 241 a~dGsG~f~TIq~Ai~a~P~~~~~r~vI~Ik~G~Y--~E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~dg~~T~~SaT~ 318 (548)
T PLN02301 241 AKDGSGKYKTVKEAVASAPDNSKTRYVIYVKKGTY--KENVEIGKKKKNLMLVGDGMDSTIITGSLNVIDGSTTFRSATV 318 (548)
T ss_pred CCCCCCCcccHHHHHHhhhhcCCceEEEEEeCcee--eEEEEecCCCceEEEEecCCCCcEEEeCCccCCCCCceeeEEE
Confidence 445665 78889964 23466777778998 4667773 689999998655543 21 1 3
Q ss_pred EEEeeccEEEeeeEEecCCCC-CCCcEEEcCCCceEEEEeeeeecCCCCe-----------------eEeeeCCccEEEe
Q 024841 98 RLKECEHVIICNLEFEGGRGH-DVDGIQIKPNSRHIWIDRCSLRDYDDGL-----------------IDITRQSTDITVS 159 (262)
Q Consensus 98 ~i~~a~NVIIrnl~i~~~~~~-~~D~I~i~~~~~nVwIDHcs~s~~~Dg~-----------------id~~~~s~nvTIS 159 (262)
.+ .+++++.|||+|++..+. ..-|+.++-.++...+.+|.|....|-+ +|+--+....-++
T Consensus 319 ~v-~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~avfq 397 (548)
T PLN02301 319 AA-VGDGFIAQDIWFQNTAGPEKHQAVALRVSADQAVINRCRIDAYQDTLYAHSLRQFYRDSYITGTVDFIFGNAAVVFQ 397 (548)
T ss_pred EE-ECCceEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeeeeccccceecCCcEEEEeeEEEeccceecccceeEEe
Confidence 33 489999999999986532 2234444435788999999997654443 3333344456667
Q ss_pred ccEEccCC-----ceeee--cCCCCCCCCcceEEEEeceeecCCCCCC------------CccccCeEEEEcceEEc
Q 024841 160 RCYFTQHD-----KTMLI--GADPSHVGDRCIRVTIHHCLFDGTRQRH------------PRLRFGKVHLYNNYTRN 217 (262)
Q Consensus 160 ~~~f~~h~-----~~~l~--G~~d~~~~d~~~~vT~hhN~f~~~~~R~------------Pr~r~G~~hv~NN~~~n 217 (262)
+|.|.... ++.+- |..+ .+...-+.||+|.+.....=. |.-.+.++-+.|.++..
T Consensus 398 ~c~i~~~~~~~~~~~~iTAqgr~~---~~~~tG~vf~~c~i~~~~~~~~~~~~~~~yLGRPW~~ysr~V~~~s~l~~ 471 (548)
T PLN02301 398 NCKIVARKPMAGQKNMVTAQGRTD---PNQNTGISIQKCDIIASSDLEPVKGSFKTYLGRPWKEYSRTVVMQSYIDD 471 (548)
T ss_pred ccEEEEecCCCCCCceEEecCCCC---CCCCCEEEEEeeEEecCccccccccccceeeecCCCCCceEEEEecccCC
Confidence 77775321 11111 1111 112235788998885433211 22234566777776643
No 35
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=97.38 E-value=0.019 Score=57.26 Aligned_cols=172 Identities=17% Similarity=0.380 Sum_probs=100.9
Q ss_pred CCCCCh---hHHHHhhc----CCCeEEEEEeeeEEEecceEEec---CCeEEEeeccceEE-ecC-----c--------E
Q 024841 42 SDDGPG---SLREGCRR----REPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIKL-TGK-----G--------L 97 (262)
Q Consensus 42 ~dsg~G---sLr~al~~----~~pr~Ivf~vsG~I~l~~~i~i~---sn~TI~G~g~~~~i-~G~-----g--------i 97 (262)
+.+|.| ++++||++ +..|+||+-..|+.. +.+.|. +|+||.|.|.+.++ .+. + +
T Consensus 235 a~dGsG~f~TIq~Ai~a~p~~~~~r~vI~Ik~GvY~--E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~saT~ 312 (541)
T PLN02416 235 AADGTGNFSTITDAINFAPNNSNDRIIIYVREGVYE--ENVEIPIYKTNIVLIGDGSDVTFITGNRSVVDGWTTFRSATL 312 (541)
T ss_pred CCCCCCCccCHHHHHHhhhhcCCceEEEEEeCceeE--EEEecCCCCccEEEEecCCCceEEeCCCccCCCCCccceEEE
Confidence 445665 78889964 345777777789984 667773 78999999865444 321 1 4
Q ss_pred EEEeeccEEEeeeEEecCCCC-CCCcEEEcCCCceEEEEeeeeecCCCCe-----------------eEeeeCCccEEEe
Q 024841 98 RLKECEHVIICNLEFEGGRGH-DVDGIQIKPNSRHIWIDRCSLRDYDDGL-----------------IDITRQSTDITVS 159 (262)
Q Consensus 98 ~i~~a~NVIIrnl~i~~~~~~-~~D~I~i~~~~~nVwIDHcs~s~~~Dg~-----------------id~~~~s~nvTIS 159 (262)
.+ .+++++.|||+|++.... ..-|+.++-.++++-+-+|.|....|-+ +|.--+....-++
T Consensus 313 ~v-~~~~F~a~nitf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~avfq 391 (541)
T PLN02416 313 AV-SGEGFLARDITIENTAGPEKHQAVALRVNADLVALYRCTINGYQDTLYVHSFRQFYRECDIYGTIDYIFGNAAVVFQ 391 (541)
T ss_pred EE-ECCCeEEEeeEEEECCCCCCCceEEEEEcCccEEEEcceEecccchhccCCCceEEEeeEEeeccceeeccceEEEe
Confidence 55 489999999999976532 2234444335788999999997544443 3333344456667
Q ss_pred ccEEccCC-----ceeeecCCCCCCCCcceEEEEeceeecCCCC----CC--------CccccCeEEEEcceEEc
Q 024841 160 RCYFTQHD-----KTMLIGADPSHVGDRCIRVTIHHCLFDGTRQ----RH--------PRLRFGKVHLYNNYTRN 217 (262)
Q Consensus 160 ~~~f~~h~-----~~~l~G~~d~~~~d~~~~vT~hhN~f~~~~~----R~--------Pr~r~G~~hv~NN~~~n 217 (262)
+|.|.... ++.+--.+.. ..+...-+.||+|.+..... +. |.-.+.++-+.|.++.+
T Consensus 392 ~c~i~~~~~~~~~~~~iTA~~r~-~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRPW~~~sr~v~~~s~i~~ 465 (541)
T PLN02416 392 ACNIVSKMPMPGQFTVITAQSRD-TPDEDTGISIQNCSILATEDLYSNSNSVKSYLGRPWRVYSRTVVLESYIDD 465 (541)
T ss_pred ccEEEEecCCCCCceEEECCCCC-CCCCCCEEEEEeeEEecCCccccccccccccccCCCCCCccEEEEecccCC
Confidence 77775432 1111111100 01122357889988854321 11 22223466777777544
No 36
>PLN02432 putative pectinesterase
Probab=97.35 E-value=0.0044 Score=57.10 Aligned_cols=98 Identities=13% Similarity=0.249 Sum_probs=67.5
Q ss_pred hhHHHHhhc----CCCeEEEEEeeeEEEecceEEe---cCCeEEEeeccceEEe----c------CcEEEEeeccEEEee
Q 024841 47 GSLREGCRR----REPLWIVFEVSGTIHLSSYLSV---SSYKTIDGRGQRIKLT----G------KGLRLKECEHVIICN 109 (262)
Q Consensus 47 GsLr~al~~----~~pr~Ivf~vsG~I~l~~~i~i---~sn~TI~G~g~~~~i~----G------~gi~i~~a~NVIIrn 109 (262)
-++++||++ ...+++|+-..|+. .+.+.| .+|+||.|.+..-++. + ..+.+ .+++++.+|
T Consensus 24 ~TIq~Aida~p~~~~~~~~I~I~~G~Y--~E~V~ip~~k~~itl~G~~~~~TvI~~~~~~~~~~saT~~v-~a~~f~a~n 100 (293)
T PLN02432 24 RKIQDAIDAVPSNNSQLVFIWVKPGIY--REKVVVPADKPFITLSGTQASNTIITWNDGGDIFESPTLSV-LASDFVGRF 100 (293)
T ss_pred cCHHHHHhhccccCCceEEEEEeCcee--EEEEEEeccCceEEEEEcCCCCeEEEecCCcccccceEEEE-ECCCeEEEe
Confidence 478889964 22345555578888 466777 3789999997544443 1 12455 489999999
Q ss_pred eEEecCCCCCCCcEEEcCCCceEEEEeeeeecCCCCee
Q 024841 110 LEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLI 147 (262)
Q Consensus 110 l~i~~~~~~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~i 147 (262)
|+|++......-|+.+.-.++++.+.+|.|....|-++
T Consensus 101 lt~~Nt~g~~~QAvAl~v~gDr~~f~~c~~~G~QDTLy 138 (293)
T PLN02432 101 LTIQNTFGSSGKAVALRVAGDRAAFYGCRILSYQDTLL 138 (293)
T ss_pred eEEEeCCCCCCceEEEEEcCCcEEEEcceEecccceeE
Confidence 99998754334455554457889999999986666654
No 37
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=97.35 E-value=0.019 Score=56.82 Aligned_cols=172 Identities=15% Similarity=0.306 Sum_probs=99.3
Q ss_pred CCCCCh---hHHHHhhc----CCCeEEEEEeeeEEEecceEEec---CCeEEEeeccceEEe-cC-----c--------E
Q 024841 42 SDDGPG---SLREGCRR----REPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIKLT-GK-----G--------L 97 (262)
Q Consensus 42 ~dsg~G---sLr~al~~----~~pr~Ivf~vsG~I~l~~~i~i~---sn~TI~G~g~~~~i~-G~-----g--------i 97 (262)
+.+|.| ++++||++ +..|++|+=..|++ .+.+.|. +|+||.|.|.+-++. +. + +
T Consensus 211 a~dGsG~f~TIq~Ai~a~P~~~~~r~vI~Ik~GvY--~E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~SAT~ 288 (520)
T PLN02201 211 AADGTGNFTTIMDAVLAAPDYSTKRYVIYIKKGVY--LENVEIKKKKWNIMMVGDGIDATVITGNRSFIDGWTTFRSATF 288 (520)
T ss_pred cCCCCCCccCHHHHHHhchhcCCCcEEEEEeCcee--EEEEEecCCCceEEEEecCCCCcEEEeCCccCCCCcccceEEE
Confidence 445655 78899964 22356666678988 4667774 689999997644433 11 1 3
Q ss_pred EEEeeccEEEeeeEEecCCCC-CCCcEEEcCCCceEEEEeeeeecCCCCee-----------------EeeeCCccEEEe
Q 024841 98 RLKECEHVIICNLEFEGGRGH-DVDGIQIKPNSRHIWIDRCSLRDYDDGLI-----------------DITRQSTDITVS 159 (262)
Q Consensus 98 ~i~~a~NVIIrnl~i~~~~~~-~~D~I~i~~~~~nVwIDHcs~s~~~Dg~i-----------------d~~~~s~nvTIS 159 (262)
.+ .+++++.+||+|++..+. ..-|+.++-.++..-+.+|.|....|-++ |.--+....-++
T Consensus 289 ~v-~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~avf~ 367 (520)
T PLN02201 289 AV-SGRGFIARDITFQNTAGPEKHQAVALRSDSDLSVFYRCAMRGYQDTLYTHTMRQFYRECRITGTVDFIFGDATAVFQ 367 (520)
T ss_pred EE-ECCCeEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeeeeccCCeeEeCCCCEEEEeeEEeecccEEecCceEEEE
Confidence 44 489999999999986532 23445454357889999999976544443 333334455667
Q ss_pred ccEEccCC-----ceeeecCCCCCCCCcceEEEEeceeecCCCCCC------------CccccCeEEEEcceEEc
Q 024841 160 RCYFTQHD-----KTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRH------------PRLRFGKVHLYNNYTRN 217 (262)
Q Consensus 160 ~~~f~~h~-----~~~l~G~~d~~~~d~~~~vT~hhN~f~~~~~R~------------Pr~r~G~~hv~NN~~~n 217 (262)
+|.|.... .+.+--.+.. ..+...-..||+|.+.....-. |.-.+.++-+.|.++.+
T Consensus 368 ~C~i~~~~~~~~~~~~iTAq~r~-~~~~~~Gfvf~~C~it~~~~~~~~~~~~~~yLGRPW~~ysrvv~~~t~l~~ 441 (520)
T PLN02201 368 NCQILAKKGLPNQKNTITAQGRK-DPNQPTGFSIQFSNISADTDLLPYLNTTATYLGRPWKLYSRTVFMQNYMSD 441 (520)
T ss_pred ccEEEEecCCCCCCceEEecCCC-CCCCCcEEEEEeeEEecCccccccccccceEeecCCCCCceEEEEecCcCC
Confidence 77776421 1121111100 0112235788998875432211 22223456667776643
No 38
>PLN02497 probable pectinesterase
Probab=97.35 E-value=0.028 Score=52.71 Aligned_cols=97 Identities=9% Similarity=0.202 Sum_probs=65.7
Q ss_pred hHHHHhhc----CCCeEEEEEeeeEEEecceEEe---cCCeEEEeeccceE-Eec---------CcEEEEeeccEEEeee
Q 024841 48 SLREGCRR----REPLWIVFEVSGTIHLSSYLSV---SSYKTIDGRGQRIK-LTG---------KGLRLKECEHVIICNL 110 (262)
Q Consensus 48 sLr~al~~----~~pr~Ivf~vsG~I~l~~~i~i---~sn~TI~G~g~~~~-i~G---------~gi~i~~a~NVIIrnl 110 (262)
++++||++ +..|++|+-..|+. .+.+.| ++++||.|+|..-+ |.. ..+.+ .+++++.+||
T Consensus 46 TIq~AIdavP~~~~~~~~I~Ik~G~Y--~EkV~Ip~~k~~itl~G~g~~~tiIt~~~~~~t~~SaT~~v-~a~~f~a~nl 122 (331)
T PLN02497 46 TIQSAIDSVPSNNKHWFCINVKAGLY--REKVKIPYDKPFIVLVGAGKRRTRIEWDDHDSTAQSPTFST-LADNTVVKSI 122 (331)
T ss_pred CHHHHHhhccccCCceEEEEEeCcEE--EEEEEecCCCCcEEEEecCCCCceEEEeccccccCceEEEE-ecCCeEEEcc
Confidence 78999964 23455556578988 466777 37899999975433 321 12555 4899999999
Q ss_pred EEecCCCC--------CCCcEEEcCCCceEEEEeeeeecCCCCee
Q 024841 111 EFEGGRGH--------DVDGIQIKPNSRHIWIDRCSLRDYDDGLI 147 (262)
Q Consensus 111 ~i~~~~~~--------~~D~I~i~~~~~nVwIDHcs~s~~~Dg~i 147 (262)
+|++.... ..-|+.+.-.++++-+.+|.|....|-++
T Consensus 123 T~~Nt~~~~~~~~~~~~~QAVAl~v~gDr~~fy~C~f~G~QDTLy 167 (331)
T PLN02497 123 TFANSYNFPSKGNKNPRVPAVAAMIGGDKSAFYSCGFAGVQDTLW 167 (331)
T ss_pred EEEeCCCCccccCCCCCcceEEEEecCCcEEEEeeEEecccccee
Confidence 99976421 12345454357889999999987666654
No 39
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=97.30 E-value=0.027 Score=57.34 Aligned_cols=170 Identities=18% Similarity=0.356 Sum_probs=102.3
Q ss_pred CCCCCh---hHHHHhhc----CCCeEEEEEeeeEEEecceEEec---CCeEEEeeccceEEe-cC-----c--------E
Q 024841 42 SDDGPG---SLREGCRR----REPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIKLT-GK-----G--------L 97 (262)
Q Consensus 42 ~dsg~G---sLr~al~~----~~pr~Ivf~vsG~I~l~~~i~i~---sn~TI~G~g~~~~i~-G~-----g--------i 97 (262)
+.+|.| ++++||++ +..|.||+-..|++ .+.+.|. .|+|+.|.|.+-++. +. | +
T Consensus 255 a~dGsG~f~TIq~Av~a~P~~~~~r~vI~Ik~GvY--~E~V~I~~~k~~i~l~Gdg~~~TiIt~~~~~~dg~~T~~SAT~ 332 (670)
T PLN02217 255 AQDGSGQYKTINEALNFVPKKKNTTFVVHIKAGIY--KEYVQVNRSMTHLVFIGDGPDKTVISGSKSYKDGITTYKTATV 332 (670)
T ss_pred CCCCCCCccCHHHHHHhccccCCceEEEEEeCCce--EEEEEEcCCCCcEEEEecCCCCeEEEcCCccCCCCCccceEEE
Confidence 455665 78899965 23466666678988 4667774 588999997655543 21 1 3
Q ss_pred EEEeeccEEEeeeEEecCCC-CCCCcEEEcCCCceEEEEeeeeecCCCC-----------------eeEeeeCCccEEEe
Q 024841 98 RLKECEHVIICNLEFEGGRG-HDVDGIQIKPNSRHIWIDRCSLRDYDDG-----------------LIDITRQSTDITVS 159 (262)
Q Consensus 98 ~i~~a~NVIIrnl~i~~~~~-~~~D~I~i~~~~~nVwIDHcs~s~~~Dg-----------------~id~~~~s~nvTIS 159 (262)
.+ .+++++.|||+|++..+ ...-|+.++-.++...+.+|.|....|- .+|+--+....-++
T Consensus 333 ~v-~g~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~avfq 411 (670)
T PLN02217 333 AI-VGDHFIAKNIGFENTAGAIKHQAVAIRVLSDESIFYNCKFDGYQDTLYAHSHRQFYRDCTISGTIDFLFGDAAAVFQ 411 (670)
T ss_pred EE-ECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeeeccchhccCCCcEEEEeCEEEEeccEEecCceEEEE
Confidence 44 48999999999998653 2234555544578899999999754333 34443444556678
Q ss_pred ccEEccCC-----ceeee--cCCCCCCCCcceEEEEeceeecCCCCCC------------CccccCeEEEEcceEEc
Q 024841 160 RCYFTQHD-----KTMLI--GADPSHVGDRCIRVTIHHCLFDGTRQRH------------PRLRFGKVHLYNNYTRN 217 (262)
Q Consensus 160 ~~~f~~h~-----~~~l~--G~~d~~~~d~~~~vT~hhN~f~~~~~R~------------Pr~r~G~~hv~NN~~~n 217 (262)
+|.|.... ++.+- |..+ .+...-+.||+|.+.....=. |.-.+.++-+.|.++.+
T Consensus 412 ~C~I~~r~~~~~~~~~ITAqgr~~---~~~~tGfvf~~C~i~~~~~~~~~~~~~~~yLGRPW~~ysrvVf~~t~l~~ 485 (670)
T PLN02217 412 NCTLLVRKPLLNQACPITAHGRKD---PRESTGFVLQGCTIVGEPDYLAVKETSKAYLGRPWKEYSRTIIMNTFIPD 485 (670)
T ss_pred ccEEEEccCCCCCceeEecCCCCC---CCCCceEEEEeeEEecCccccccccccceeeccCCCCCceEEEEecccCC
Confidence 88876421 12111 1111 112245789999886543111 22223556667776643
No 40
>PLN02665 pectinesterase family protein
Probab=97.25 E-value=0.039 Score=52.42 Aligned_cols=99 Identities=13% Similarity=0.241 Sum_probs=66.7
Q ss_pred hhHHHHhhc----CCCeEEEEEeeeEEEecceEEec---CCeEEEeeccceE-EecC------------cEEEEeeccEE
Q 024841 47 GSLREGCRR----REPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIK-LTGK------------GLRLKECEHVI 106 (262)
Q Consensus 47 GsLr~al~~----~~pr~Ivf~vsG~I~l~~~i~i~---sn~TI~G~g~~~~-i~G~------------gi~i~~a~NVI 106 (262)
-++++||++ ...|++|+-..|+.. +.+.|. +++||.|++...+ |... .+.+ .+++++
T Consensus 81 ~TIq~AIdaiP~~~~~r~vI~Ik~GvY~--EkV~Ip~~kp~Itl~G~~~~~tiIt~~~~a~~~gT~~SaTv~v-~a~~F~ 157 (366)
T PLN02665 81 KTITDAIKSIPAGNTQRVIIDIGPGEYN--EKITIDRSKPFVTLYGSPGAMPTLTFDGTAAKYGTVYSATLIV-ESDYFM 157 (366)
T ss_pred cCHHHHHhhCcccCCceEEEEEeCcEEE--EEEEecCCCCEEEEEecCCCCCEEEECCccCCCCCcceEEEEE-ECCCeE
Confidence 389999965 233666666789884 667773 7899999865433 3211 1444 489999
Q ss_pred EeeeEEecCCCC------CCCcEEEcCCCceEEEEeeeeecCCCCeeE
Q 024841 107 ICNLEFEGGRGH------DVDGIQIKPNSRHIWIDRCSLRDYDDGLID 148 (262)
Q Consensus 107 Irnl~i~~~~~~------~~D~I~i~~~~~nVwIDHcs~s~~~Dg~id 148 (262)
.+||+|++.... +.-|+.++-.++++-+.+|.|....|-+++
T Consensus 158 a~nitf~Nta~~~~~~~~g~QAVAl~v~gDka~f~~C~f~G~QDTL~~ 205 (366)
T PLN02665 158 AANIIIKNSAPRPDGKRKGAQAVAMRISGDKAAFYNCRFIGFQDTLCD 205 (366)
T ss_pred EEeeEEEeCCCCcCCCCCCcceEEEEEcCCcEEEEcceeccccceeEe
Confidence 999999986421 123444433468899999999877666654
No 41
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=97.21 E-value=0.029 Score=56.07 Aligned_cols=120 Identities=16% Similarity=0.298 Sum_probs=80.0
Q ss_pred CCCCCh---hHHHHhhcC-----CCeEEEEEeeeEEEecceEEe---cCCeEEEeeccceEEe-c------Cc-------
Q 024841 42 SDDGPG---SLREGCRRR-----EPLWIVFEVSGTIHLSSYLSV---SSYKTIDGRGQRIKLT-G------KG------- 96 (262)
Q Consensus 42 ~dsg~G---sLr~al~~~-----~pr~Ivf~vsG~I~l~~~i~i---~sn~TI~G~g~~~~i~-G------~g------- 96 (262)
+.+|.| +.++||++- ..|.||+-..|+.+ +.+.| .+|+||+|.|.+-|+. + .|
T Consensus 246 a~dGsg~f~TIq~Av~a~p~~~~~~r~vI~vk~GvY~--E~V~i~~~k~~v~l~G~g~~~TiIt~~~~~~~~g~~T~~sa 323 (553)
T PLN02708 246 CKDGNCCYKTVQEAVNAAPDNNGDRKFVIRIKEGVYE--ETVRVPLEKKNVVFLGDGMGKTVITGSLNVGQPGISTYNTA 323 (553)
T ss_pred CCCCCCCccCHHHHHHhhhhccCCccEEEEEeCceEE--eeeeecCCCccEEEEecCCCceEEEecCccCCCCcCccceE
Confidence 445554 788998642 34667776789984 66766 3789999997655543 1 12
Q ss_pred -EEEEeeccEEEeeeEEecCCCCC-CCcEEEcCCCceEEEEeeeeecCCC-----------------CeeEeeeCCccEE
Q 024841 97 -LRLKECEHVIICNLEFEGGRGHD-VDGIQIKPNSRHIWIDRCSLRDYDD-----------------GLIDITRQSTDIT 157 (262)
Q Consensus 97 -i~i~~a~NVIIrnl~i~~~~~~~-~D~I~i~~~~~nVwIDHcs~s~~~D-----------------g~id~~~~s~nvT 157 (262)
+.+ .+++++.|||+|++..+.. .-|+.++..++.+.+.+|.|....| |.+|+--+...+-
T Consensus 324 T~~v-~~~~f~a~~it~~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~~~~rq~y~~C~I~GtVDFIFG~a~av 402 (553)
T PLN02708 324 TVGV-LGDGFMARDLTIQNTAGPDAHQAVAFRSDSDLSVIENCEFLGNQDTLYAHSLRQFYKSCRIQGNVDFIFGNSAAV 402 (553)
T ss_pred EEEE-EcCCeEEEeeEEEcCCCCCCCceEEEEecCCcEEEEeeeeeeccccceeCCCceEEEeeEEeecCCEEecCceEE
Confidence 344 4899999999999875322 3455555467899999999975433 3344434445667
Q ss_pred EeccEEc
Q 024841 158 VSRCYFT 164 (262)
Q Consensus 158 IS~~~f~ 164 (262)
+++|.|.
T Consensus 403 fq~c~i~ 409 (553)
T PLN02708 403 FQDCAIL 409 (553)
T ss_pred EEccEEE
Confidence 7788776
No 42
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=97.20 E-value=0.028 Score=56.26 Aligned_cols=170 Identities=14% Similarity=0.378 Sum_probs=100.3
Q ss_pred CCCCCh---hHHHHhhcC-------CCeEEEEEeeeEEEecceEEe---cCCeEEEeeccceEEe-cC------------
Q 024841 42 SDDGPG---SLREGCRRR-------EPLWIVFEVSGTIHLSSYLSV---SSYKTIDGRGQRIKLT-GK------------ 95 (262)
Q Consensus 42 ~dsg~G---sLr~al~~~-------~pr~Ivf~vsG~I~l~~~i~i---~sn~TI~G~g~~~~i~-G~------------ 95 (262)
+.+|.| +.++||++- ..|+||+=..|++. +.+.| .+|+||.|.|.+-++. +.
T Consensus 255 a~dGsG~f~TIq~Av~a~p~~~~~~~~~~vI~Ik~G~Y~--E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~S 332 (566)
T PLN02713 255 NQNGTGNFTTINDAVAAAPNNTDGSNGYFVIYVTAGVYE--EYVSIPKNKKYLMMIGDGINQTVITGNRSVVDGWTTFNS 332 (566)
T ss_pred CCCCCCCCCCHHHHHHhhhcccCCCCceEEEEEcCcEEE--EEEEecCCCceEEEEecCCCCcEEEcCCcccCCCccccc
Confidence 455665 788899642 12556666789984 66777 3689999997644433 21
Q ss_pred -cEEEEeeccEEEeeeEEecCCCC-CCCcEEEcCCCceEEEEeeeeecCCCCe-----------------eEeeeCCccE
Q 024841 96 -GLRLKECEHVIICNLEFEGGRGH-DVDGIQIKPNSRHIWIDRCSLRDYDDGL-----------------IDITRQSTDI 156 (262)
Q Consensus 96 -gi~i~~a~NVIIrnl~i~~~~~~-~~D~I~i~~~~~nVwIDHcs~s~~~Dg~-----------------id~~~~s~nv 156 (262)
.+.+ .+++++.|||+|++..+. ..-|+.++-.++...+.+|.|....|-+ +|+--+...+
T Consensus 333 aT~~v-~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~a 411 (566)
T PLN02713 333 ATFAV-VGQNFVAVNITFRNTAGPAKHQAVALRSGADLSTFYSCSFEAYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAV 411 (566)
T ss_pred eeEEE-ECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeeccCCcceEECCCCEEEEeeEEecccceecccceE
Confidence 1445 489999999999986432 2244544445788999999997654443 3333344456
Q ss_pred EEeccEEccCC-----ceeee--cCCCCCCCCcceEEEEeceeecCCCCCC------------CccccCeEEEEcceEEc
Q 024841 157 TVSRCYFTQHD-----KTMLI--GADPSHVGDRCIRVTIHHCLFDGTRQRH------------PRLRFGKVHLYNNYTRN 217 (262)
Q Consensus 157 TIS~~~f~~h~-----~~~l~--G~~d~~~~d~~~~vT~hhN~f~~~~~R~------------Pr~r~G~~hv~NN~~~n 217 (262)
-+++|.|.... ++.+- |..+ .+...-+.||+|.+.....-. |.-.+.++-+.|.++.+
T Consensus 412 vfq~C~i~~~~~~~~~~~~iTAq~r~~---~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRPW~~ysr~V~~~s~~~~ 488 (566)
T PLN02713 412 VFQNCNLYPRLPMQGQFNTITAQGRTD---PNQNTGTSIQNCTIKAADDLASSNYTVKTYLGRPWKEYSRTVVMQSYIDG 488 (566)
T ss_pred EEeccEEEEecCCCCCcceeeecCCCC---CCCCCEEEEEcCEEecCCcccccccccceeeecCCCCcceEEEEecccCC
Confidence 67777775321 11111 1111 112245789999886433211 22223556677776653
No 43
>smart00656 Amb_all Amb_all domain.
Probab=97.17 E-value=0.012 Score=50.72 Aligned_cols=132 Identities=19% Similarity=0.183 Sum_probs=81.8
Q ss_pred CCeEEEeeccceEEecCcEEEEeeccEEEeeeEEecCCC-----CCCCc-EEEcCCCceEEEEeeeeecCCCCeeEeeeC
Q 024841 79 SYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRG-----HDVDG-IQIKPNSRHIWIDRCSLRDYDDGLIDITRQ 152 (262)
Q Consensus 79 sn~TI~G~g~~~~i~G~gi~i~~a~NVIIrnl~i~~~~~-----~~~D~-I~i~~~~~nVwIDHcs~s~~~Dg~id~~~~ 152 (262)
.|++|.+..+.....+.+|.+..++||.|.|.+|..+.. ...|+ +.+..++.+|-|-.|.|....-+++-...+
T Consensus 45 rnl~i~~~~~~~~~~~D~i~~~~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f~~h~~~~liG~~d 124 (190)
T smart00656 45 RNLTIHDPKPVYGSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYFHNHWKVMLLGHSD 124 (190)
T ss_pred eCCEEECCccCCCCCCCEEEEeCCCeEEEEccEeEcceeccCCCCCCCccEEECcccccEEEECceEecCCEEEEEccCC
Confidence 366666643321223567888889999999999997621 11344 455546788888888887544444422211
Q ss_pred C------ccEEEeccEEccCCceeeecCCCCCCCCcceEEEEeceeecCCCCCCCcccc-CeEEEEcceEEcC
Q 024841 153 S------TDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLRF-GKVHLYNNYTRNW 218 (262)
Q Consensus 153 s------~nvTIS~~~f~~h~~~~l~G~~d~~~~d~~~~vT~hhN~f~~~~~R~Pr~r~-G~~hv~NN~~~n~ 218 (262)
. -+||+.+|+|.+.. +..+ .. +...+=+.+|+|.+.....--.+. +.+.+.||||++.
T Consensus 125 ~~~~~~~~~vT~h~N~~~~~~-----~R~P-~~--r~g~~hv~NN~~~n~~~~~~~~~~~~~v~~E~N~F~~~ 189 (190)
T smart00656 125 SDTDDGKMRVTIAHNYFGNLR-----QRAP-RV--RFGYVHVYNNYYTGWTSYAIGGRMGATILSEGNYFEAP 189 (190)
T ss_pred CccccccceEEEECcEEcCcc-----cCCC-cc--cCCEEEEEeeEEeCcccEeEecCCCcEEEEECeEEECC
Confidence 1 26999999998532 1111 11 111567788999887644333332 5789999999874
No 44
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=97.17 E-value=0.049 Score=54.67 Aligned_cols=151 Identities=17% Similarity=0.374 Sum_probs=91.8
Q ss_pred CCCCCh---hHHHHhhcC----CCeEEEEEeeeEEEecceEEec---CCeEEEeeccceEEe-cC-----c---------
Q 024841 42 SDDGPG---SLREGCRRR----EPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIKLT-GK-----G--------- 96 (262)
Q Consensus 42 ~dsg~G---sLr~al~~~----~pr~Ivf~vsG~I~l~~~i~i~---sn~TI~G~g~~~~i~-G~-----g--------- 96 (262)
+.+|.| +.++||++- ..|.+|+-..|++. +.+.|. +|+||.|.|.+-++. +. +
T Consensus 264 a~dGsG~f~TIq~Av~a~p~~~~~r~vI~Ik~GvY~--E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~~T~~saT 341 (572)
T PLN02990 264 AQDGSGQYKTINEALNAVPKANQKPFVIYIKQGVYN--EKVDVTKKMTHVTFIGDGPTKTKITGSLNFYIGKVKTYLTAT 341 (572)
T ss_pred CCCCCCCCcCHHHHHhhCcccCCceEEEEEeCceeE--EEEEecCCCCcEEEEecCCCceEEEeccccCCCCccceeeeE
Confidence 455666 889999652 23566666789884 667774 789999997644433 11 1
Q ss_pred EEEEeeccEEEeeeEEecCCCC-CCCcEEEcCCCceEEEEeeeeecCCCC-----------------eeEeeeCCccEEE
Q 024841 97 LRLKECEHVIICNLEFEGGRGH-DVDGIQIKPNSRHIWIDRCSLRDYDDG-----------------LIDITRQSTDITV 158 (262)
Q Consensus 97 i~i~~a~NVIIrnl~i~~~~~~-~~D~I~i~~~~~nVwIDHcs~s~~~Dg-----------------~id~~~~s~nvTI 158 (262)
+.+ .+++++.|||+|++..+. ..-|+.++-.++...+.+|.|....|- .+|+--+....-+
T Consensus 342 ~~v-~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~avf 420 (572)
T PLN02990 342 VAI-NGDHFTAKNIGFENTAGPEGHQAVALRVSADYAVFYNCQIDGYQDTLYVHSHRQFFRDCTVSGTVDFIFGDAKVVL 420 (572)
T ss_pred EEE-EcCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEecccchhccCCCcEEEEeeEEecccceEccCceEEE
Confidence 344 489999999999986532 234555544578899999999754433 3343334445667
Q ss_pred eccEEccCC-----ceeeecCCCCCCCCcceEEEEeceeecCC
Q 024841 159 SRCYFTQHD-----KTMLIGADPSHVGDRCIRVTIHHCLFDGT 196 (262)
Q Consensus 159 S~~~f~~h~-----~~~l~G~~d~~~~d~~~~vT~hhN~f~~~ 196 (262)
++|.|.... ++.+--.+... .....-+.||+|.+...
T Consensus 421 ~~C~i~~~~~~~~~~~~iTAq~r~~-~~~~~G~vf~~C~it~~ 462 (572)
T PLN02990 421 QNCNIVVRKPMKGQSCMITAQGRSD-VRESTGLVLQNCHITGE 462 (572)
T ss_pred EccEEEEecCCCCCceEEEeCCCCC-CCCCceEEEEeeEEecC
Confidence 888876421 12222111000 11223578899988654
No 45
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=97.14 E-value=0.062 Score=53.36 Aligned_cols=173 Identities=15% Similarity=0.301 Sum_probs=100.6
Q ss_pred CCCCCCh---hHHHHhhc----CCCeEEEEEeeeEEEecceEEec---CCeEEEeeccceEEe-cC-------------c
Q 024841 41 LSDDGPG---SLREGCRR----REPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIKLT-GK-------------G 96 (262)
Q Consensus 41 l~dsg~G---sLr~al~~----~~pr~Ivf~vsG~I~l~~~i~i~---sn~TI~G~g~~~~i~-G~-------------g 96 (262)
.+.+|.| +.++||++ +..|++|+=..|+.. +.+.|. +|+||.|.|.+-++. +. .
T Consensus 222 Va~dGsG~f~TIq~Ai~a~P~~~~~r~vI~Ik~GvY~--E~V~I~~~k~~itl~G~g~~~TiIt~~~~~~dg~~T~~SaT 299 (530)
T PLN02933 222 VAIDGTGNFTTINEAVSAAPNSSETRFIIYIKGGEYF--ENVELPKKKTMIMFIGDGIGKTVIKANRSRIDGWSTFQTAT 299 (530)
T ss_pred ECCCCCCCccCHHHHHHhchhcCCCcEEEEEcCceEE--EEEEecCCCceEEEEEcCCCCcEEEeCCccCCCCccccceE
Confidence 3455665 78889965 233566666789985 667773 689999997654433 11 1
Q ss_pred EEEEeeccEEEeeeEEecCCCC-CCCcEEEcCCCceEEEEeeeeecCCCCe-----------------eEeeeCCccEEE
Q 024841 97 LRLKECEHVIICNLEFEGGRGH-DVDGIQIKPNSRHIWIDRCSLRDYDDGL-----------------IDITRQSTDITV 158 (262)
Q Consensus 97 i~i~~a~NVIIrnl~i~~~~~~-~~D~I~i~~~~~nVwIDHcs~s~~~Dg~-----------------id~~~~s~nvTI 158 (262)
+.+ .+++++.|||+|++..+. ..-|+.++-.++.+-+.+|.|...-|-+ +|+--+....-+
T Consensus 300 ~~v-~a~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~~Rqyy~~C~IeGtVDFIFG~a~avF 378 (530)
T PLN02933 300 VGV-KGKGFIAKDISFVNYAGPAKHQAVALRSGSDHSAFYRCEFDGYQDTLYVHSAKQFYRECDIYGTIDFIFGNAAVVF 378 (530)
T ss_pred EEE-ECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEEeEEEecccccccCCCceEEEeeEEecccceeccCceEEE
Confidence 444 489999999999986532 2344555445789999999997654443 333333344556
Q ss_pred eccEEccCC-----ceeeecCCCCCCCCcceEEEEeceeecCCCCCC------------CccccCeEEEEcceEEc
Q 024841 159 SRCYFTQHD-----KTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRH------------PRLRFGKVHLYNNYTRN 217 (262)
Q Consensus 159 S~~~f~~h~-----~~~l~G~~d~~~~d~~~~vT~hhN~f~~~~~R~------------Pr~r~G~~hv~NN~~~n 217 (262)
++|.|.... ++.+--.+.. ..+...-+.||+|.+.....-. |.-.+.++-+.+.++.+
T Consensus 379 q~C~i~~~~~~~~~~~~iTAq~r~-~~~~~tGfvf~~C~it~~~~~~~~~~~~~~yLGRPW~~ysrvVf~~s~l~~ 453 (530)
T PLN02933 379 QNCSLYARKPNPNHKIAFTAQSRN-QSDQPTGISIISSRILAAPDLIPVKENFKAYLGRPWRKYSRTVIIKSFIDD 453 (530)
T ss_pred eccEEEEeccCCCCceEEEecCCC-CCCCCceEEEEeeEEecCCcccccccccceEeccCCCCCceEEEEecccCC
Confidence 677765321 1222111110 0112235788998875432211 22224566777776653
No 46
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=97.09 E-value=0.051 Score=54.14 Aligned_cols=168 Identities=15% Similarity=0.353 Sum_probs=101.6
Q ss_pred CCCCh---hHHHHhhcC---C----CeEEEEEeeeEEEecceEEe---cCCeEEEeeccceEEe-cC-------------
Q 024841 43 DDGPG---SLREGCRRR---E----PLWIVFEVSGTIHLSSYLSV---SSYKTIDGRGQRIKLT-GK------------- 95 (262)
Q Consensus 43 dsg~G---sLr~al~~~---~----pr~Ivf~vsG~I~l~~~i~i---~sn~TI~G~g~~~~i~-G~------------- 95 (262)
.+|.| ++++||.+- . .|.||+-..|++. +.+.| .+|+||.|.|.+-+|. +.
T Consensus 229 ~dGsG~f~TI~~Av~a~p~~~~~~~~r~vI~vk~G~Y~--E~V~i~~~k~~i~l~G~g~~~tiIt~~~~~~dg~~T~~sa 306 (538)
T PLN03043 229 PYGTDNFTTITDAIAAAPNNSKPEDGYFVIYAREGYYE--EYVVVPKNKKNIMLIGDGINKTIITGNHSVVDGWTTFNSS 306 (538)
T ss_pred CCCCCCCcCHHHHHHhccccCCCCcceEEEEEcCeeeE--EEEEeCCCCCcEEEEecCCCCeEEEeCCccCCCCccccce
Confidence 34544 788899641 1 2566666789984 66777 3799999997654443 21
Q ss_pred cEEEEeeccEEEeeeEEecCCC-CCCCcEEEcCCCceEEEEeeeeecCCCC-----------------eeEeeeCCccEE
Q 024841 96 GLRLKECEHVIICNLEFEGGRG-HDVDGIQIKPNSRHIWIDRCSLRDYDDG-----------------LIDITRQSTDIT 157 (262)
Q Consensus 96 gi~i~~a~NVIIrnl~i~~~~~-~~~D~I~i~~~~~nVwIDHcs~s~~~Dg-----------------~id~~~~s~nvT 157 (262)
.+.+ .+++++.|||+|++..+ ...-|+.++..++..-+.+|.|....|- .+|+--+...+-
T Consensus 307 T~~v-~~~~F~a~~it~~Ntag~~~~QAvAlrv~~D~~~f~~C~~~gyQDTLy~~~~rq~y~~c~I~GtVDFIFG~a~av 385 (538)
T PLN03043 307 TFAV-SGERFVAVDVTFRNTAGPEKHQAVALRNNADLSTFYRCSFEGYQDTLYVHSLRQFYRECDIYGTVDFIFGNAAAI 385 (538)
T ss_pred EEEE-ECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeccCcccccCCCcEEEEeeEEeeccceEeecceee
Confidence 1444 48999999999998653 2234555544578899999999754443 334333445667
Q ss_pred EeccEEccCC-----ceeee--cCCCCCCCCcceEEEEeceeecCCC-------------CCCCccccCeEEEEcceEEc
Q 024841 158 VSRCYFTQHD-----KTMLI--GADPSHVGDRCIRVTIHHCLFDGTR-------------QRHPRLRFGKVHLYNNYTRN 217 (262)
Q Consensus 158 IS~~~f~~h~-----~~~l~--G~~d~~~~d~~~~vT~hhN~f~~~~-------------~R~Pr~r~G~~hv~NN~~~n 217 (262)
+++|.|.... ++.+- |..+ .+...-+.||+|.+.... +| |.-.+.++-+.+.++.+
T Consensus 386 fq~c~i~~r~~~~~~~~~iTA~~r~~---~~~~tG~~~~~c~i~~~~~~~~~~~~~~~yLGR-pW~~ysr~v~~~s~i~~ 461 (538)
T PLN03043 386 FQNCNLYARKPMANQKNAFTAQGRTD---PNQNTGISIINCTIEAAPDLAMDPNSTMNFLGR-PWKPYSRTVYMQSYIGD 461 (538)
T ss_pred eeccEEEEecCCCCCCceEEecCCCC---CCCCceEEEEecEEecCCcccccccccceeccC-CCCCCceEEEEecccCC
Confidence 7888886421 12221 1111 112235789999875432 22 22234567777777654
No 47
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=97.05 E-value=0.0092 Score=59.23 Aligned_cols=115 Identities=20% Similarity=0.493 Sum_probs=75.1
Q ss_pred CCeEEEeeccceEEecC---cEEEEeeccEEEeeeEEecCCCCCCCcEEEcCCCceEEEEeeeeecCCCCeeEeee----
Q 024841 79 SYKTIDGRGQRIKLTGK---GLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITR---- 151 (262)
Q Consensus 79 sn~TI~G~g~~~~i~G~---gi~i~~a~NVIIrnl~i~~~~~~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~id~~~---- 151 (262)
.|+++.|. +|... ++....++|+.++||+|..-...+.|||.+. +|+||.|+.|.|+.+.|-. -++.
T Consensus 247 ~NV~~~g~----~i~ns~~~~~h~~~~~nl~~~nl~I~~~~~~NtDG~d~~-sc~NvlI~~~~fdtgDD~I-~iksg~~~ 320 (542)
T COG5434 247 RNVLLEGL----NIKNSPLWTVHPVDCDNLTFRNLTIDANRFDNTDGFDPG-SCSNVLIEGCRFDTGDDCI-AIKSGAGL 320 (542)
T ss_pred ceEEEeee----EecCCCcEEEeeecccCceecceEEECCCCCCCCccccc-cceeEEEeccEEecCCceE-EeecccCC
Confidence 45666554 33322 3455679999999999987654478999997 8999999999999876653 3322
Q ss_pred -------CCccEEEeccEEccCCceeeecCCCCCCCCcceEEEEeceeecCCCCCCCcc
Q 024841 152 -------QSTDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRL 203 (262)
Q Consensus 152 -------~s~nvTIS~~~f~~h~~~~l~G~~d~~~~d~~~~vT~hhN~f~~~~~R~Pr~ 203 (262)
.+.+++|++|+|..-.-+..+|+.-. .+-.+|++-.|.|.+ ..|-=|+
T Consensus 321 ~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gse~~---ggv~ni~ved~~~~~-~d~GLRi 375 (542)
T COG5434 321 DGKKGYGPSRNIVIRNCYFSSGHGGLVLGSEMG---GGVQNITVEDCVMDN-TDRGLRI 375 (542)
T ss_pred cccccccccccEEEecceecccccceEeeeecC---CceeEEEEEeeeecc-Ccceeee
Confidence 23579999999985444444554321 111356666666665 4444444
No 48
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=97.05 E-value=0.064 Score=54.08 Aligned_cols=152 Identities=16% Similarity=0.309 Sum_probs=90.8
Q ss_pred CCCCCh---hHHHHhhc----CCCeEEEEEeeeEEEecceEEec---CCeEEEeeccceEEe-cC-----c--------E
Q 024841 42 SDDGPG---SLREGCRR----REPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIKLT-GK-----G--------L 97 (262)
Q Consensus 42 ~dsg~G---sLr~al~~----~~pr~Ivf~vsG~I~l~~~i~i~---sn~TI~G~g~~~~i~-G~-----g--------i 97 (262)
+.+|.| ++++||++ ...|++|+=..|++. +.+.|. +|+||.|.|.+-|+. +. + +
T Consensus 290 a~dGsG~f~TIq~Ai~a~P~~~~~r~vI~Ik~GvY~--E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~saT~ 367 (596)
T PLN02745 290 AKDGSGNFTTISDALAAMPAKYEGRYVIYVKQGIYD--ETVTVDKKMVNVTMYGDGSQKTIVTGNKNFADGVRTFRTATF 367 (596)
T ss_pred CCCCCCCcccHHHHHHhccccCCceEEEEEeCCeeE--EEEEEcCCCceEEEEecCCCceEEEECCcccCCCcceeeEEE
Confidence 445655 88999965 234566666789884 667774 689999997654433 21 1 3
Q ss_pred EEEeeccEEEeeeEEecCCCC-CCCcEEEcCCCceEEEEeeeeecCCCCe-----------------eEeeeCCccEEEe
Q 024841 98 RLKECEHVIICNLEFEGGRGH-DVDGIQIKPNSRHIWIDRCSLRDYDDGL-----------------IDITRQSTDITVS 159 (262)
Q Consensus 98 ~i~~a~NVIIrnl~i~~~~~~-~~D~I~i~~~~~nVwIDHcs~s~~~Dg~-----------------id~~~~s~nvTIS 159 (262)
.+ .+++++.+||+|++..+. ..-|+.++-.++...+.+|.|....|-+ +|+--+....-++
T Consensus 368 ~v-~~~~F~a~nitf~Ntag~~~~QAVAl~v~~Dr~~f~~c~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~avf~ 446 (596)
T PLN02745 368 VA-LGEGFMAKSMGFRNTAGPEKHQAVAIRVQSDRSIFLNCRFEGYQDTLYAQTHRQFYRSCVITGTIDFIFGDAAAIFQ 446 (596)
T ss_pred EE-EcCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeecccccccCCCcEEEEeeEEEeeccEEecceeEEEE
Confidence 44 489999999999986432 2234444435788999999997554443 3433344456667
Q ss_pred ccEEccCC-----ceeeecCCCCCCCCcceEEEEeceeecCCC
Q 024841 160 RCYFTQHD-----KTMLIGADPSHVGDRCIRVTIHHCLFDGTR 197 (262)
Q Consensus 160 ~~~f~~h~-----~~~l~G~~d~~~~d~~~~vT~hhN~f~~~~ 197 (262)
+|.|.... .+.+--.+.. ..+...-+.||+|.+....
T Consensus 447 ~C~i~~~~~~~~~~~~iTAq~r~-~~~~~~Gfvf~~c~i~~~~ 488 (596)
T PLN02745 447 NCLIFVRKPLPNQQNTVTAQGRV-DKFETTGIVLQNCRIAPDE 488 (596)
T ss_pred ecEEEEecCCCCCCceEEecCCC-CCCCCceEEEEeeEEecCc
Confidence 77775321 1111111100 0112235788999886543
No 49
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=97.03 E-value=0.053 Score=54.01 Aligned_cols=166 Identities=17% Similarity=0.331 Sum_probs=97.6
Q ss_pred hhHHHHhhc----CCCeEEEEEeeeEEEecceEEec---CCeEEEeeccceEE-ecC-----c--------EEEEeeccE
Q 024841 47 GSLREGCRR----REPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIKL-TGK-----G--------LRLKECEHV 105 (262)
Q Consensus 47 GsLr~al~~----~~pr~Ivf~vsG~I~l~~~i~i~---sn~TI~G~g~~~~i-~G~-----g--------i~i~~a~NV 105 (262)
-++++||++ +..|.||+=..|+. .+.+.|. +|+||.|.|.+-++ .+. + +.+ .++++
T Consensus 245 ~TIq~Av~a~p~~~~~r~vI~Vk~GvY--~E~V~I~~~k~~i~l~G~g~~~tiIt~~~~~~~g~~T~~saT~~v-~~~~F 321 (537)
T PLN02506 245 RTITEAINEAPNHSNRRYIIYVKKGVY--KENIDMKKKKTNIMLVGDGIGQTVVTGNRNFMQGWTTFRTATVAV-SGRGF 321 (537)
T ss_pred cCHHHHHHhchhcCCCcEEEEEeCCee--eEEEeccCCCceEEEEEcCCCCeEEEeCccccCCCCcccceEEEE-EcCCe
Confidence 478889964 23466777778988 4567763 78999999765444 321 1 333 48999
Q ss_pred EEeeeEEecCCCC-CCCcEEEcCCCceEEEEeeeeecCCCCe-----------------eEeeeCCccEEEeccEEccCC
Q 024841 106 IICNLEFEGGRGH-DVDGIQIKPNSRHIWIDRCSLRDYDDGL-----------------IDITRQSTDITVSRCYFTQHD 167 (262)
Q Consensus 106 IIrnl~i~~~~~~-~~D~I~i~~~~~nVwIDHcs~s~~~Dg~-----------------id~~~~s~nvTIS~~~f~~h~ 167 (262)
+.+||+|++.... ..-++.++-.++++-+.+|.|....|-+ +|+--+....-+++|.|....
T Consensus 322 ~a~nit~~Ntag~~~~QAVAl~v~~D~~~fy~C~~~G~QDTLy~~~~rqyy~~C~I~GtVDFIFG~a~avfq~C~i~~r~ 401 (537)
T PLN02506 322 IARDITFRNTAGPQNHQAVALRVDSDQSAFYRCSMEGYQDTLYAHSLRQFYRECEIYGTIDFIFGNGAAVLQNCKIYTRV 401 (537)
T ss_pred EEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeecccccceecCCceEEEeeEEecccceEccCceeEEeccEEEEcc
Confidence 9999999976532 2334444435789999999997554443 333334445667777776431
Q ss_pred -----ceeeecCCCCCCCCcceEEEEeceeecCCC----CCCCccccCeEEEEcceEEc
Q 024841 168 -----KTMLIGADPSHVGDRCIRVTIHHCLFDGTR----QRHPRLRFGKVHLYNNYTRN 217 (262)
Q Consensus 168 -----~~~l~G~~d~~~~d~~~~vT~hhN~f~~~~----~R~Pr~r~G~~hv~NN~~~n 217 (262)
++.+--++.. ..+...-+.||+|.+.... +| |.-.+.++-+.|.++..
T Consensus 402 ~~~~~~~~iTA~~r~-~~~~~~G~vf~~c~i~~~~~~yLGR-PW~~~sr~v~~~t~l~~ 458 (537)
T PLN02506 402 PLPLQKVTITAQGRK-SPHQSTGFSIQDSYVLATQPTYLGR-PWKQYSRTVFMNTYMSQ 458 (537)
T ss_pred CCCCCCceEEccCCC-CCCCCcEEEEEcCEEccCCceEEec-CCCCCceEEEEecCCCC
Confidence 1222111100 0112234778888775421 11 33234566777777653
No 50
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=97.02 E-value=0.066 Score=52.78 Aligned_cols=172 Identities=15% Similarity=0.345 Sum_probs=101.8
Q ss_pred CCCCCh---hHHHHhhc----CCCeEEEEEeeeEEEecceEEec---CCeEEEeeccceEEe-cC-----c--------E
Q 024841 42 SDDGPG---SLREGCRR----REPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIKLT-GK-----G--------L 97 (262)
Q Consensus 42 ~dsg~G---sLr~al~~----~~pr~Ivf~vsG~I~l~~~i~i~---sn~TI~G~g~~~~i~-G~-----g--------i 97 (262)
+.+|.| +.++||++ +..|.+|+=..|+.. +.+.|. +|+||.|.|.+-++. +. + +
T Consensus 202 a~dGsG~f~TIq~AI~a~P~~~~~r~vI~Ik~GvY~--E~V~I~~~k~nItliGdg~~~TiIt~n~~~~~g~~T~~SATv 279 (509)
T PLN02488 202 AKDGSGKYNTVNAAIAAAPEHSRKRFVIYIKTGVYD--EIVRIGSTKPNLTLIGDGQDSTIITGNLSASNGKRTFYTATV 279 (509)
T ss_pred CCCCCCCccCHHHHHHhchhcCCCcEEEEEeCCeeE--EEEEecCCCccEEEEecCCCceEEEEcccccCCCCceeeEEE
Confidence 345655 78889964 233566666789884 667773 789999998655543 21 1 3
Q ss_pred EEEeeccEEEeeeEEecCCCC-CCCcEEEcCCCceEEEEeeeeecCCCCe-----------------eEeeeCCccEEEe
Q 024841 98 RLKECEHVIICNLEFEGGRGH-DVDGIQIKPNSRHIWIDRCSLRDYDDGL-----------------IDITRQSTDITVS 159 (262)
Q Consensus 98 ~i~~a~NVIIrnl~i~~~~~~-~~D~I~i~~~~~nVwIDHcs~s~~~Dg~-----------------id~~~~s~nvTIS 159 (262)
.+ .+++++.+||+|++..+. ..-|+.++-.++...+.+|.|....|-+ +|+--+...+-++
T Consensus 280 ~v-~g~gF~A~nitf~Ntag~~~~QAVALrv~~Dra~Fy~C~f~GyQDTLy~~~~RqyyrdC~I~GtVDFIFG~a~avFq 358 (509)
T PLN02488 280 AS-NGDGFIGIDMCFRNTAGPAKGPAVALRVSGDMSVIYRCRIEGYQDALYPHRDRQFYRECFITGTVDFICGNAAAVFQ 358 (509)
T ss_pred EE-EcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeeccCcceeeCCCCEEEEeeEEeeccceEecceEEEEE
Confidence 33 478999999999976532 2345555546789999999997654443 3333344456677
Q ss_pred ccEEccCC-----ceeeecCCCCCCCCcceEEEEeceeecCCCCCCC------------ccccCeEEEEcceEEc
Q 024841 160 RCYFTQHD-----KTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHP------------RLRFGKVHLYNNYTRN 217 (262)
Q Consensus 160 ~~~f~~h~-----~~~l~G~~d~~~~d~~~~vT~hhN~f~~~~~R~P------------r~r~G~~hv~NN~~~n 217 (262)
+|.|.... ++.+--.+.. ......-+.||+|.+.....-.| .-.+.++-+.+.++.+
T Consensus 359 ~C~I~sr~~~~~~~~~ITAq~R~-~~~~~tGfvf~~C~it~~~~~~~~~~~~~~YLGRPW~~ySrvVf~~s~i~~ 432 (509)
T PLN02488 359 FCQIVARQPMMGQSNVITAQSRE-SKDDNSGFSIQKCNITASSDLDPVKATVKTYLGRPWRKYSTVAVLQSFIGD 432 (509)
T ss_pred ccEEEEecCCCCCCEEEEeCCCC-CCCCCcEEEEEeeEEecCCcccccccccceeecCCCCCCccEEEEeccCCC
Confidence 88776431 1222111100 01122357899998866443222 1123456666666643
No 51
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=97.02 E-value=0.055 Score=54.22 Aligned_cols=168 Identities=14% Similarity=0.300 Sum_probs=99.6
Q ss_pred CCCCh---hHHHHhhc----CCCeEEEEEeeeEEEecceEEec---CCeEEEeeccceEEe--------cC------cEE
Q 024841 43 DDGPG---SLREGCRR----REPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIKLT--------GK------GLR 98 (262)
Q Consensus 43 dsg~G---sLr~al~~----~~pr~Ivf~vsG~I~l~~~i~i~---sn~TI~G~g~~~~i~--------G~------gi~ 98 (262)
.+|.| +.++||++ +..|.||+-..|++. +.+.|. +|+||.|.|.+-++. |. .+.
T Consensus 264 ~dGsg~f~tI~~Av~a~p~~~~~~~vI~ik~GvY~--E~V~i~~~k~~i~~~G~g~~~tiIt~~~~~~dg~~t~~saT~~ 341 (565)
T PLN02468 264 KDGSGKYKTISEALKDVPEKSEKRTIIYVKKGVYF--ENVRVEKKKWNVVMVGDGMSKTIVSGSLNFVDGTPTFSTATFA 341 (565)
T ss_pred CCCCCCccCHHHHHHhchhcCCCcEEEEEeCCceE--EEEEecCCCCeEEEEecCCCCCEEEeCCccCCCCCccceeeee
Confidence 34655 78888864 234666666789984 667773 689999997654443 11 134
Q ss_pred EEeeccEEEeeeEEecCCCC-CCCcEEEcCCCceEEEEeeeeecCCCC-----------------eeEeeeCCccEEEec
Q 024841 99 LKECEHVIICNLEFEGGRGH-DVDGIQIKPNSRHIWIDRCSLRDYDDG-----------------LIDITRQSTDITVSR 160 (262)
Q Consensus 99 i~~a~NVIIrnl~i~~~~~~-~~D~I~i~~~~~nVwIDHcs~s~~~Dg-----------------~id~~~~s~nvTIS~ 160 (262)
+ .+++++.|||+|++..+. ..-|+.++-.++...+.+|.|....|- .+|+--+...+-+++
T Consensus 342 v-~~~~f~a~~itf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~~~~rq~y~~C~I~GtvDFIFG~a~avfq~ 420 (565)
T PLN02468 342 V-FGKGFMARDMGFRNTAGPIKHQAVALMSSADLSVFYRCTMDAFQDTLYAHAQRQFYRECNIYGTVDFIFGNSAVVFQN 420 (565)
T ss_pred E-ECCCeEEEEEEEEeCCCCCCCceEEEEEcCCcEEEEEeEEEeccchhccCCCceEEEeeEEecccceeeccceEEEec
Confidence 4 378999999999976532 224444444578899999999754333 344434445667778
Q ss_pred cEEccCC-----ceeee--cCCCCCCCCcceEEEEeceeecCCC---------CCCCccccCeEEEEcceEEc
Q 024841 161 CYFTQHD-----KTMLI--GADPSHVGDRCIRVTIHHCLFDGTR---------QRHPRLRFGKVHLYNNYTRN 217 (262)
Q Consensus 161 ~~f~~h~-----~~~l~--G~~d~~~~d~~~~vT~hhN~f~~~~---------~R~Pr~r~G~~hv~NN~~~n 217 (262)
|.|.... ++.+- |..+ .+...-+.||+|.+.... +| |.-.+.++-+.|.++..
T Consensus 421 c~i~~~~~~~~~~~~iTA~~r~~---~~~~~G~vf~~c~i~~~~~~~~~~~yLGR-PW~~~sr~v~~~s~~~~ 489 (565)
T PLN02468 421 CNILPRRPMKGQQNTITAQGRTD---PNQNTGISIQNCTILPLGDLTSVKTFLGR-PWKNYSTTVIMHSMMGS 489 (565)
T ss_pred cEEEEecCCCCCCceEEecCCCC---CCCCceEEEEccEEecCCCccccceeeec-CCCCCceEEEEecccCC
Confidence 8775321 11111 1111 112235788998876432 12 22233456667776643
No 52
>PLN02682 pectinesterase family protein
Probab=97.02 E-value=0.013 Score=55.54 Aligned_cols=165 Identities=14% Similarity=0.193 Sum_probs=92.8
Q ss_pred hHHHHhhcC----CCeEEEEEeeeEEEecceEEe---cCCeEEEeeccceEEe------------cC--------cEEEE
Q 024841 48 SLREGCRRR----EPLWIVFEVSGTIHLSSYLSV---SSYKTIDGRGQRIKLT------------GK--------GLRLK 100 (262)
Q Consensus 48 sLr~al~~~----~pr~Ivf~vsG~I~l~~~i~i---~sn~TI~G~g~~~~i~------------G~--------gi~i~ 100 (262)
+.++||++- ..|++|+=..|+. .+.+.| .+++||.|.|..-++. |. .+.+
T Consensus 84 TIQ~AIdavP~~~~~r~vI~Ik~G~Y--~EkV~Ip~~k~~Itl~G~g~~~TiIt~~~~a~~~~~~g~~~gT~~SAT~~v- 160 (369)
T PLN02682 84 TIQAAIDSLPVINLVRVVIKVNAGTY--REKVNIPPLKAYITLEGAGADKTIIQWGDTADTPGPGGRPLGTYGSATFAV- 160 (369)
T ss_pred CHHHHHhhccccCCceEEEEEeCcee--eEEEEEeccCceEEEEecCCCccEEEeccccCccCCCCCccccccceEEEE-
Confidence 789999652 2355555567988 466777 4789999997544432 10 1444
Q ss_pred eeccEEEeeeEEecCCCC------CCCcEEEcCCCceEEEEeeeeecCCCCeeE-----------------eeeCCccEE
Q 024841 101 ECEHVIICNLEFEGGRGH------DVDGIQIKPNSRHIWIDRCSLRDYDDGLID-----------------ITRQSTDIT 157 (262)
Q Consensus 101 ~a~NVIIrnl~i~~~~~~------~~D~I~i~~~~~nVwIDHcs~s~~~Dg~id-----------------~~~~s~nvT 157 (262)
.+++++.+||+|++.... ..-|+.+.-.++++-+.+|.|....|-+++ .--+....-
T Consensus 161 ~a~~F~a~nlTf~Nt~~~~~~g~~g~QAVAL~v~gDr~~fy~C~f~G~QDTLy~~~gRqyf~~C~IeG~VDFIFG~g~a~ 240 (369)
T PLN02682 161 NSPYFIAKNITFKNTAPVPPPGALGKQAVALRISADTAAFYGCKFLGAQDTLYDHLGRHYFKDCYIEGSVDFIFGNGLSL 240 (369)
T ss_pred ECCCeEEEeeEEEcccccCCCCCCcccEEEEEecCCcEEEEcceEeccccceEECCCCEEEEeeEEcccccEEecCceEE
Confidence 488999999999986421 122444433578899999999766555543 222333444
Q ss_pred EeccEEccC--CceeeecCCCCCCCCcceEEEEeceeecCCC----CCCCccccCeEEEEcceEEc
Q 024841 158 VSRCYFTQH--DKTMLIGADPSHVGDRCIRVTIHHCLFDGTR----QRHPRLRFGKVHLYNNYTRN 217 (262)
Q Consensus 158 IS~~~f~~h--~~~~l~G~~d~~~~d~~~~vT~hhN~f~~~~----~R~Pr~r~G~~hv~NN~~~n 217 (262)
+++|.|... ..+.+--.+.. ......-..|++|.+.... .| |.-.+.++-+.|.++.+
T Consensus 241 Fe~C~I~s~~~~~G~ITA~~r~-~~~~~~GfvF~~C~itg~g~~yLGR-pW~~yarvVf~~t~m~~ 304 (369)
T PLN02682 241 YEGCHLHAIARNFGALTAQKRQ-SVLEDTGFSFVNCKVTGSGALYLGR-AWGTFSRVVFAYTYMDN 304 (369)
T ss_pred EEccEEEEecCCCeEEecCCCC-CCCCCceEEEEeeEecCCCceEeec-CCCCcceEEEEeccCCC
Confidence 555655431 11222111100 0011234677777775421 22 22223566777777654
No 53
>PLN02773 pectinesterase
Probab=96.96 E-value=0.018 Score=53.62 Aligned_cols=166 Identities=15% Similarity=0.249 Sum_probs=93.7
Q ss_pred hhHHHHhhc----CCCeEEEEEeeeEEEecceEEec---CCeEEEeeccceEE-e-----------------cC------
Q 024841 47 GSLREGCRR----REPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIKL-T-----------------GK------ 95 (262)
Q Consensus 47 GsLr~al~~----~~pr~Ivf~vsG~I~l~~~i~i~---sn~TI~G~g~~~~i-~-----------------G~------ 95 (262)
-++++||++ ...+++|+=..|+.. +.|.|. +++||.|++..-++ . |.
T Consensus 18 ~TIq~Aida~P~~~~~~~~I~Ik~G~Y~--E~V~I~~~k~~itl~G~~~~~TiI~~~~~a~~~~~~~~~~~~g~gT~~Sa 95 (317)
T PLN02773 18 CTVQDAIDAVPLCNRCRTVIRVAPGVYR--QPVYVPKTKNLITLAGLSPEATVLTWNNTATKIDHHQASRVIGTGTFGCG 95 (317)
T ss_pred cCHHHHHhhchhcCCceEEEEEeCceEE--EEEEECcCCccEEEEeCCCCceEEEccCccccccccccccccCcCccCce
Confidence 478899864 223555665789884 667773 57999998654333 2 00
Q ss_pred cEEEEeeccEEEeeeEEecCCCC-CCCcEEEcCCCceEEEEeeeeecCCCCeeE-----------------eeeCCccEE
Q 024841 96 GLRLKECEHVIICNLEFEGGRGH-DVDGIQIKPNSRHIWIDRCSLRDYDDGLID-----------------ITRQSTDIT 157 (262)
Q Consensus 96 gi~i~~a~NVIIrnl~i~~~~~~-~~D~I~i~~~~~nVwIDHcs~s~~~Dg~id-----------------~~~~s~nvT 157 (262)
.+.+ .+++++.+||+|++.... ..-|+.+.-.++++-+.+|.|....|-+++ .--+....-
T Consensus 96 Tv~v-~a~~f~a~nlT~~Nt~~~~~gQAvAl~v~gDr~~f~~c~~~G~QDTL~~~~gr~yf~~c~IeG~VDFIFG~g~a~ 174 (317)
T PLN02773 96 TVIV-EGEDFIAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLRDCYIEGSVDFIFGNSTAL 174 (317)
T ss_pred EEEE-ECCCeEEEeeEEEeCCCCCCCcEEEEEecCccEEEEccEeecccceeEeCCCCEEEEeeEEeecccEEeeccEEE
Confidence 1334 489999999999986432 233444443568899999998765555443 222333344
Q ss_pred EeccEEccCCceeeecCCCCCCCCcceEEEEeceeecCCC-------CCCCccccCeEEEEcceEEc
Q 024841 158 VSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTR-------QRHPRLRFGKVHLYNNYTRN 217 (262)
Q Consensus 158 IS~~~f~~h~~~~l~G~~d~~~~d~~~~vT~hhN~f~~~~-------~R~Pr~r~G~~hv~NN~~~n 217 (262)
+.+|.|.....+.+--.+-. ......-..|++|.+.... .| |.-.++++-+.|.++..
T Consensus 175 Fe~c~i~s~~~g~ITA~~r~-~~~~~~GfvF~~c~it~~~~~~~~yLGR-pW~~~a~vVf~~t~l~~ 239 (317)
T PLN02773 175 LEHCHIHCKSAGFITAQSRK-SSQESTGYVFLRCVITGNGGSGYMYLGR-PWGPFGRVVFAYTYMDA 239 (317)
T ss_pred EEeeEEEEccCcEEECCCCC-CCCCCceEEEEccEEecCCCCcceeecC-CCCCCceEEEEecccCC
Confidence 55665553322222111100 0111234678888776532 12 32234566777776653
No 54
>PLN02304 probable pectinesterase
Probab=96.89 E-value=0.019 Score=54.62 Aligned_cols=104 Identities=14% Similarity=0.171 Sum_probs=69.9
Q ss_pred CCCCCh---hHHHHhhc----CCCeEEEEEeeeEEEecceEEe---cCCeEEEeeccceEE-ec-------------CcE
Q 024841 42 SDDGPG---SLREGCRR----REPLWIVFEVSGTIHLSSYLSV---SSYKTIDGRGQRIKL-TG-------------KGL 97 (262)
Q Consensus 42 ~dsg~G---sLr~al~~----~~pr~Ivf~vsG~I~l~~~i~i---~sn~TI~G~g~~~~i-~G-------------~gi 97 (262)
+.+|.| ++++||++ +..|++|+=..|+.. +.+.| ++|+||.|+|..-++ .. ..+
T Consensus 80 a~dGsGdf~TIQ~AIdavP~~~~~r~vI~Ik~GvY~--EkV~Ip~~K~~Itl~G~g~~~TiIt~~~~a~~~~gT~~SaTv 157 (379)
T PLN02304 80 DPNGCCNFTTVQSAVDAVGNFSQKRNVIWINSGIYY--EKVTVPKTKPNITFQGQGFDSTAIAWNDTAKSANGTFYSASV 157 (379)
T ss_pred CCCCCCCccCHHHHHhhCcccCCCcEEEEEeCeEeE--EEEEECCCCCcEEEEecCCCCcEEEccCcccCCCCccceEEE
Confidence 344554 89999965 233566666789884 67777 478999999765443 21 113
Q ss_pred EEEeeccEEEeeeEEecCCCC------CCCcEEEcCCCceEEEEeeeeecCCCCeeE
Q 024841 98 RLKECEHVIICNLEFEGGRGH------DVDGIQIKPNSRHIWIDRCSLRDYDDGLID 148 (262)
Q Consensus 98 ~i~~a~NVIIrnl~i~~~~~~------~~D~I~i~~~~~nVwIDHcs~s~~~Dg~id 148 (262)
.+ .+++++.+||+|++.... ..-|+.+.-.++.+-+.+|.|....|-+++
T Consensus 158 ~v-~a~~F~a~nITf~Nta~~~~~g~~~~QAVAL~v~gDra~fy~C~f~G~QDTLy~ 213 (379)
T PLN02304 158 QV-FASNFIAKNISFMNVAPIPKPGDVGAQAVAIRIAGDQAAFWGCGFFGAQDTLHD 213 (379)
T ss_pred EE-ECCCeEEEeeEEEecCCCCCCCCCCccEEEEEecCCcEEEEeceEecccceeEe
Confidence 44 489999999999976421 123444443578899999999876666553
No 55
>PLN02916 pectinesterase family protein
Probab=96.89 E-value=0.1 Score=51.50 Aligned_cols=145 Identities=14% Similarity=0.250 Sum_probs=86.5
Q ss_pred hhHHHHhhcC-------CCeEEEEEeeeEEEecceEEec---CCeEEEeeccceEEe-c-------C------cEEEEee
Q 024841 47 GSLREGCRRR-------EPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIKLT-G-------K------GLRLKEC 102 (262)
Q Consensus 47 GsLr~al~~~-------~pr~Ivf~vsG~I~l~~~i~i~---sn~TI~G~g~~~~i~-G-------~------gi~i~~a 102 (262)
-++++||++- ..|++|+=..|+.. +.+.|. +|+||.|.|.+-++. + . .+.+ .+
T Consensus 200 ~TIq~AI~a~P~~~~~~~~r~vI~Ik~GvY~--E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~SAT~~v-~~ 276 (502)
T PLN02916 200 RTINQALAALSRMGKSRTNRVIIYVKAGVYN--EKVEIDRHMKNVMFVGDGMDKTIITNNRNVPDGSTTYSSATFGV-SG 276 (502)
T ss_pred cCHHHHHHhcccccCCCCceEEEEEeCceee--EEEEecCCCceEEEEecCCCCcEEEeCCccCCCCcceeeEEEEE-EC
Confidence 4788999642 23666666789884 667773 689999997654443 2 1 1344 48
Q ss_pred ccEEEeeeEEecCCCC-CCCcEEEcCCCceEEEEeeeeecCCCCe-----------------eEeeeCCccEEEeccEEc
Q 024841 103 EHVIICNLEFEGGRGH-DVDGIQIKPNSRHIWIDRCSLRDYDDGL-----------------IDITRQSTDITVSRCYFT 164 (262)
Q Consensus 103 ~NVIIrnl~i~~~~~~-~~D~I~i~~~~~nVwIDHcs~s~~~Dg~-----------------id~~~~s~nvTIS~~~f~ 164 (262)
++++.|||+|++..+. ..-|+.++-.++..-+.+|.|....|-+ +|.--+....-+++|.|.
T Consensus 277 ~~F~A~nitf~Ntag~~~~QAVALrv~~D~a~fy~C~f~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~avFq~C~I~ 356 (502)
T PLN02916 277 DGFWARDITFENTAGPHKHQAVALRVSSDLSVFYRCSFKGYQDTLFVHSLRQFYRDCHIYGTIDFIFGDAAVVFQNCDIF 356 (502)
T ss_pred CCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEeccCceeEeCCCCEEEEecEEecccceeccCceEEEecCEEE
Confidence 8999999999976532 2234444435788999999997654444 333334445566777765
Q ss_pred cCC-----ceeeecCCCCCCCCcceEEEEeceeecC
Q 024841 165 QHD-----KTMLIGADPSHVGDRCIRVTIHHCLFDG 195 (262)
Q Consensus 165 ~h~-----~~~l~G~~d~~~~d~~~~vT~hhN~f~~ 195 (262)
... .+.+--.+.. ......-+.||+|.+..
T Consensus 357 ~~~~~~~~~g~ITAq~r~-~~~~~tGfvf~~C~it~ 391 (502)
T PLN02916 357 VRRPMDHQGNMITAQGRD-DPHENTGISIQHSRVRA 391 (502)
T ss_pred EecCCCCCcceEEecCCC-CCCCCcEEEEEeeEEec
Confidence 321 1222211110 01112357888887754
No 56
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=96.84 E-value=0.11 Score=52.29 Aligned_cols=150 Identities=19% Similarity=0.366 Sum_probs=90.1
Q ss_pred CCCCCh---hHHHHhhc----CCCeEEEEEeeeEEEecc-eEEec---CCeEEEeeccceEEe-cC-------------c
Q 024841 42 SDDGPG---SLREGCRR----REPLWIVFEVSGTIHLSS-YLSVS---SYKTIDGRGQRIKLT-GK-------------G 96 (262)
Q Consensus 42 ~dsg~G---sLr~al~~----~~pr~Ivf~vsG~I~l~~-~i~i~---sn~TI~G~g~~~~i~-G~-------------g 96 (262)
+.+|.| ++++||++ +..|+||+-..|++. + .+.|. +|+||.|.|.+-+|. +. .
T Consensus 277 a~dGsG~f~TIq~Ai~a~P~~~~~r~vI~Ik~G~Y~--E~~v~i~~~k~ni~l~G~g~~~TiIt~~~~~~~~~~t~~saT 354 (587)
T PLN02484 277 SKDGNGTFKTISEAIKKAPEHSSRRTIIYVKAGRYE--ENNLKVGRKKTNLMFIGDGKGKTVITGGKSIFDNLTTFHTAS 354 (587)
T ss_pred CCCCCCCcccHHHHHHhccccCCCcEEEEEeCCEEE--EEEEEECCCCceEEEEecCCCCeEEecCCcccCCCcccceEE
Confidence 444543 78889965 234667776789984 4 37774 689999997655543 21 1
Q ss_pred EEEEeeccEEEeeeEEecCCCC-CCCcEEEcCCCceEEEEeeeeecCCCCe-----------------eEeeeCCccEEE
Q 024841 97 LRLKECEHVIICNLEFEGGRGH-DVDGIQIKPNSRHIWIDRCSLRDYDDGL-----------------IDITRQSTDITV 158 (262)
Q Consensus 97 i~i~~a~NVIIrnl~i~~~~~~-~~D~I~i~~~~~nVwIDHcs~s~~~Dg~-----------------id~~~~s~nvTI 158 (262)
+.+ .+++++.|||+|++..+. ..-|+.++-.+++..+.+|.|....|-+ +|+--+....-+
T Consensus 355 ~~v-~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~avf 433 (587)
T PLN02484 355 FAA-TGAGFIARDMTFENWAGPAKHQAVALRVGADHAVVYRCNIIGYQDTLYVHSNRQFFRECDIYGTVDFIFGNAAVVL 433 (587)
T ss_pred EEE-EcCCEEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeEeccCcccccCCCcEEEEecEEEeccceecccceeEE
Confidence 334 489999999999986532 2244444435788999999997554443 333334445666
Q ss_pred eccEEccCC-----ceeeecCCCCCCCCcceEEEEeceeecC
Q 024841 159 SRCYFTQHD-----KTMLIGADPSHVGDRCIRVTIHHCLFDG 195 (262)
Q Consensus 159 S~~~f~~h~-----~~~l~G~~d~~~~d~~~~vT~hhN~f~~ 195 (262)
++|.|.... ++.+--.+.. ..+...-+.||+|.+..
T Consensus 434 q~C~i~~~~~~~~~~~~ITAq~r~-~~~~~~G~vf~~c~i~~ 474 (587)
T PLN02484 434 QNCSIYARKPMAQQKNTITAQNRK-DPNQNTGISIHACRILA 474 (587)
T ss_pred eccEEEEecCCCCCceEEEecCCC-CCCCCcEEEEEeeEEec
Confidence 777776421 1222211110 01122357899998854
No 57
>PLN02634 probable pectinesterase
Probab=96.82 E-value=0.034 Score=52.63 Aligned_cols=97 Identities=13% Similarity=0.223 Sum_probs=64.8
Q ss_pred hHHHHhhcC----CCeEEEEEeeeEEEecceEEe---cCCeEEEeeccceEEe------------cC--------cEEEE
Q 024841 48 SLREGCRRR----EPLWIVFEVSGTIHLSSYLSV---SSYKTIDGRGQRIKLT------------GK--------GLRLK 100 (262)
Q Consensus 48 sLr~al~~~----~pr~Ivf~vsG~I~l~~~i~i---~sn~TI~G~g~~~~i~------------G~--------gi~i~ 100 (262)
|+++||++- ..+++|+-..|+. .+.+.| ++++||.|.|...++. |. .+.+
T Consensus 70 TIQaAIda~P~~~~~r~vI~Ik~GvY--~EkV~Ip~~k~~ItL~G~g~~~TiIt~~~~a~~~~~~g~~~~T~~SaTv~V- 146 (359)
T PLN02634 70 SVQDAVDSVPKNNTMSVTIKINAGFY--REKVVVPATKPYITFQGAGRDVTAIEWHDRASDRGANGQQLRTYQTASVTV- 146 (359)
T ss_pred CHHHHHhhCcccCCccEEEEEeCceE--EEEEEEcCCCCeEEEEecCCCceEEEecccccccCCCCcccccccceEEEE-
Confidence 789999652 2355555578998 466777 3789999997655543 10 1344
Q ss_pred eeccEEEeeeEEecCCC------CCCCcEEEcCCCceEEEEeeeeecCCCCee
Q 024841 101 ECEHVIICNLEFEGGRG------HDVDGIQIKPNSRHIWIDRCSLRDYDDGLI 147 (262)
Q Consensus 101 ~a~NVIIrnl~i~~~~~------~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~i 147 (262)
.+++++.+||+|++... ...-|+.+.-.++++-+.+|.|....|-++
T Consensus 147 ~a~~F~a~niTf~Nta~~~~~g~~~~QAVAl~v~gDra~f~~C~f~G~QDTL~ 199 (359)
T PLN02634 147 YANYFTARNISFKNTAPAPMPGMQGWQAVAFRISGDKAFFFGCGFYGAQDTLC 199 (359)
T ss_pred ECCCeEEEeCeEEeCCccCCCCCCCCceEEEEecCCcEEEEEeEEecccceee
Confidence 48899999999997642 122344443346789999999976655554
No 58
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=96.82 E-value=0.17 Score=47.51 Aligned_cols=93 Identities=18% Similarity=0.262 Sum_probs=64.2
Q ss_pred eeEEEecceEEecCCeEEEeeccceEEecCc----EEEEeeccEEEeeeEEecCCC---CCCCcEEEcCCCceEEEEeee
Q 024841 66 SGTIHLSSYLSVSSYKTIDGRGQRIKLTGKG----LRLKECEHVIICNLEFEGGRG---HDVDGIQIKPNSRHIWIDRCS 138 (262)
Q Consensus 66 sG~I~l~~~i~i~sn~TI~G~g~~~~i~G~g----i~i~~a~NVIIrnl~i~~~~~---~~~D~I~i~~~~~nVwIDHcs 138 (262)
+|.. ..++.|+.-+|+.|. .++++.|.+ +++. +.++|||.|++++... .-.-+|.+...++.-.|.||+
T Consensus 40 ~g~~--~g~~vInr~l~l~ge-~ga~l~g~g~G~~vtv~-aP~~~v~Gl~vr~sg~~lp~m~agI~v~~~at~A~Vr~N~ 115 (408)
T COG3420 40 SGRY--AGNFVINRALTLRGE-NGAVLDGGGKGSYVTVA-APDVIVEGLTVRGSGRSLPAMDAGIFVGRTATGAVVRHND 115 (408)
T ss_pred eeee--cccEEEccceeeccc-cccEEecCCcccEEEEe-CCCceeeeEEEecCCCCcccccceEEeccCcccceEEccc
Confidence 3555 467888888999887 456777653 6665 9999999999996542 224456665567777888888
Q ss_pred eecCCCCeeEeeeCCccEEEeccEEc
Q 024841 139 LRDYDDGLIDITRQSTDITVSRCYFT 164 (262)
Q Consensus 139 ~s~~~Dg~id~~~~s~nvTIS~~~f~ 164 (262)
+....-|.+ + .++..+-|--|.+.
T Consensus 116 l~~n~~Gi~-l-~~s~d~~i~~n~i~ 139 (408)
T COG3420 116 LIGNSFGIY-L-HGSADVRIEGNTIQ 139 (408)
T ss_pred ccccceEEE-E-eccCceEEEeeEEe
Confidence 877776643 3 34566666666554
No 59
>PLN02314 pectinesterase
Probab=96.80 E-value=0.017 Score=58.10 Aligned_cols=172 Identities=15% Similarity=0.314 Sum_probs=101.6
Q ss_pred CCCCCh---hHHHHhhc----CCCeEEEEEeeeEEEecceEEec---CCeEEEeeccceEE-ec-------C------cE
Q 024841 42 SDDGPG---SLREGCRR----REPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIKL-TG-------K------GL 97 (262)
Q Consensus 42 ~dsg~G---sLr~al~~----~~pr~Ivf~vsG~I~l~~~i~i~---sn~TI~G~g~~~~i-~G-------~------gi 97 (262)
+.+|.| ++++||++ +..|+||+-..|++. +.+.|. +|+|+.|.|.+-+| .+ . .+
T Consensus 283 a~dGsg~f~TI~~Av~a~p~~~~~r~vI~ik~G~Y~--E~V~i~~~k~~i~l~G~g~~~tiIt~~~~~~~g~~t~~saT~ 360 (586)
T PLN02314 283 AKDGSGDVKTINEAVASIPKKSKSRFVIYVKEGTYV--ENVLLDKSKWNVMIYGDGKDKTIISGSLNFVDGTPTFSTATF 360 (586)
T ss_pred CCCCCCCccCHHHHHhhccccCCceEEEEEcCceEE--EEEEecCCCceEEEEecCCCCcEEEecCCcCCCCCccceEEE
Confidence 344554 78899964 234667776789984 667773 68999999765444 32 1 13
Q ss_pred EEEeeccEEEeeeEEecCCCC-CCCcEEEcCCCceEEEEeeeeecCCCCe-----------------eEeeeCCccEEEe
Q 024841 98 RLKECEHVIICNLEFEGGRGH-DVDGIQIKPNSRHIWIDRCSLRDYDDGL-----------------IDITRQSTDITVS 159 (262)
Q Consensus 98 ~i~~a~NVIIrnl~i~~~~~~-~~D~I~i~~~~~nVwIDHcs~s~~~Dg~-----------------id~~~~s~nvTIS 159 (262)
.+ .+++++.|||+|++..+. ..-|+.++-+++...+.+|.|....|-+ +|+--+....-++
T Consensus 361 ~v-~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~f~~c~~~G~QDTLy~~~~rq~y~~C~I~GtvDFIFG~a~avf~ 439 (586)
T PLN02314 361 AA-AGKGFIAKDMGFINTAGAAKHQAVAFRSGSDMSVFYQCSFDAFQDTLYAHSNRQFYRDCDITGTIDFIFGNAAVVFQ 439 (586)
T ss_pred EE-EcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeEEEeccchheeCCCCEEEEeeEEEeccceeccCceeeee
Confidence 44 489999999999987532 2245555445788999999997554443 3333344456677
Q ss_pred ccEEccCC-----ceeeecCCCCCCCCcceEEEEeceeecCCCC-CC------CccccCeEEEEcceEEc
Q 024841 160 RCYFTQHD-----KTMLIGADPSHVGDRCIRVTIHHCLFDGTRQ-RH------PRLRFGKVHLYNNYTRN 217 (262)
Q Consensus 160 ~~~f~~h~-----~~~l~G~~d~~~~d~~~~vT~hhN~f~~~~~-R~------Pr~r~G~~hv~NN~~~n 217 (262)
+|.|.... ++.+--.+.. ..+...-+.||+|.+..... .. |.-.+.++-+.|.++.+
T Consensus 440 ~c~i~~~~~~~~~~~~iTA~~r~-~~~~~~G~vf~~c~i~~~~~~~~~~yLGRpW~~ysr~v~~~s~i~~ 508 (586)
T PLN02314 440 NCNIQPRQPLPNQFNTITAQGKK-DPNQNTGISIQRCTISAFGNLTAPTYLGRPWKDFSTTVIMQSYIGS 508 (586)
T ss_pred ccEEEEecCCCCCCceEecCCCC-CCCCCCEEEEEeeEEecCCcccccccccCCCCCCceEEEEecccCC
Confidence 88776321 1111111100 01122357889998865432 11 22223466677777654
No 60
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=96.74 E-value=0.024 Score=56.44 Aligned_cols=103 Identities=20% Similarity=0.412 Sum_probs=69.7
Q ss_pred CCCCCh---hHHHHhhcC------CCeEEEEEeeeEEEecceEEec---CCeEEEeeccceEEe-cC-----c-------
Q 024841 42 SDDGPG---SLREGCRRR------EPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIKLT-GK-----G------- 96 (262)
Q Consensus 42 ~dsg~G---sLr~al~~~------~pr~Ivf~vsG~I~l~~~i~i~---sn~TI~G~g~~~~i~-G~-----g------- 96 (262)
+.+|.| +.++||++. ..|++|+=..|++. +.+.|. +|+|+.|.|.+-|+. +. +
T Consensus 228 a~dGsG~f~TIq~Ai~a~p~~~~~~~r~vI~Ik~G~Y~--E~V~i~~~k~~i~l~G~g~~~TvIt~~~~~~~~~~T~~Sa 305 (539)
T PLN02995 228 AKDGSGHFNTVQAAIDVAGRRKVTSGRFVIYVKRGIYQ--ENINVRLNNDDIMLVGDGMRSTIITGGRSVKGGYTTYNSA 305 (539)
T ss_pred CCCCCCCccCHHHHHHhcccccCCCceEEEEEeCCEeE--EEEEecCCCCcEEEEEcCCCCeEEEeCCccCCCCcccceE
Confidence 445666 889999742 23566665689984 567773 799999998654543 21 1
Q ss_pred -EEEEeeccEEEeeeEEecCCCC-CCCcEEEcCCCceEEEEeeeeecCCCCee
Q 024841 97 -LRLKECEHVIICNLEFEGGRGH-DVDGIQIKPNSRHIWIDRCSLRDYDDGLI 147 (262)
Q Consensus 97 -i~i~~a~NVIIrnl~i~~~~~~-~~D~I~i~~~~~nVwIDHcs~s~~~Dg~i 147 (262)
+.+ .+++++.|||+|++..+. ..-|+.++-.++...+.+|.|....|-++
T Consensus 306 T~~v-~~~~F~a~nitf~Ntag~~~~QAVAlrv~~Dr~~f~~c~~~G~QDTLy 357 (539)
T PLN02995 306 TAGI-EGLHFIAKGITFRNTAGPAKGQAVALRSSSDLSIFYKCSIEGYQDTLM 357 (539)
T ss_pred EEEE-ECCCeEEEeeEEEeCCCCCCCceEEEEEcCCceeEEcceEecccchhc
Confidence 344 489999999999986532 23455554457899999999976554443
No 61
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=96.61 E-value=0.026 Score=52.18 Aligned_cols=110 Identities=16% Similarity=0.345 Sum_probs=63.8
Q ss_pred hhHHHHhhc----CCCeEEEEEeeeEEEecceEEec---CCeEEEeeccceE-EecC-------------cEEEEeeccE
Q 024841 47 GSLREGCRR----REPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIK-LTGK-------------GLRLKECEHV 105 (262)
Q Consensus 47 GsLr~al~~----~~pr~Ivf~vsG~I~l~~~i~i~---sn~TI~G~g~~~~-i~G~-------------gi~i~~a~NV 105 (262)
-++++||+. ...+++|+-..|+.+ +.+.|. +++||.|.+..-+ |.+. .+.+. ++++
T Consensus 13 ~TIq~Aida~p~~~~~~~~I~I~~G~Y~--E~V~i~~~k~~v~l~G~~~~~tiI~~~~~~~~~~~t~~saT~~v~-a~~f 89 (298)
T PF01095_consen 13 TTIQAAIDAAPDNNTSRYTIFIKPGTYR--EKVTIPRSKPNVTLIGEGRDKTIITGNDNAADGGGTFRSATFSVN-ADDF 89 (298)
T ss_dssp SSHHHHHHHS-SSSSS-EEEEE-SEEEE----EEE-STSTTEEEEES-TTTEEEEE---TTTB-HCGGC-SEEE--STT-
T ss_pred cCHHHHHHhchhcCCceEEEEEeCeeEc--cccEeccccceEEEEecCCCceEEEEecccccccccccccccccc-ccce
Confidence 358888864 234566666789995 667774 6899999976434 3331 15564 8999
Q ss_pred EEeeeEEecCCC---CCCCcEEEcCCCceEEEEeeeeecCCCCeeEeeeCCccEEEeccEEc
Q 024841 106 IICNLEFEGGRG---HDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFT 164 (262)
Q Consensus 106 IIrnl~i~~~~~---~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~id~~~~s~nvTIS~~~f~ 164 (262)
+++||+|++... ...-|+.+. ++++.+.+|.|....|-++.- ....-+.+|+|.
T Consensus 90 ~~~nit~~Nt~g~~~~qAvAl~~~--~d~~~f~~c~~~g~QDTL~~~---~~r~y~~~c~Ie 146 (298)
T PF01095_consen 90 TAENITFENTAGPSGGQAVALRVS--GDRAAFYNCRFLGYQDTLYAN---GGRQYFKNCYIE 146 (298)
T ss_dssp EEEEEEEEEHCSGSG----SEEET---TSEEEEEEEEE-STT-EEE----SSEEEEES-EEE
T ss_pred eeeeeEEecCCCCcccceeeeeec--CCcEEEEEeEEccccceeeec---cceeEEEeeEEE
Confidence 999999997532 223566664 678999999998777765532 223444555554
No 62
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=96.54 E-value=0.038 Score=55.58 Aligned_cols=170 Identities=15% Similarity=0.346 Sum_probs=101.7
Q ss_pred CCCCCh---hHHHHhhc----CCCeEEEEEeeeEEEecceEEec---CCeEEEeeccceEEe-cC-------------cE
Q 024841 42 SDDGPG---SLREGCRR----REPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIKLT-GK-------------GL 97 (262)
Q Consensus 42 ~dsg~G---sLr~al~~----~~pr~Ivf~vsG~I~l~~~i~i~---sn~TI~G~g~~~~i~-G~-------------gi 97 (262)
+.+|.| ++++||++ +..|.||+-..|++. +.+.|. +|++|+|.|.+-||. +. .+
T Consensus 280 a~dGsG~f~TI~~Av~a~p~~~~~r~vI~ik~GvY~--E~V~i~~~k~ni~l~Gdg~~~TiIt~~~~~~~g~~t~~sat~ 357 (587)
T PLN02313 280 AADGSGDFTTVAAAVAAAPEKSNKRFVIHIKAGVYR--ENVEVTKKKKNIMFLGDGRGKTIITGSRNVVDGSTTFHSATV 357 (587)
T ss_pred CCCCCCCCccHHHHHHhccccCCceEEEEEeCceeE--EEEEeCCCCCeEEEEecCCCccEEEeCCcccCCCCceeeEEE
Confidence 344554 78889964 234666666789884 667774 689999997654443 21 13
Q ss_pred EEEeeccEEEeeeEEecCCCC-CCCcEEEcCCCceEEEEeeeeecCCC-----------------CeeEeeeCCccEEEe
Q 024841 98 RLKECEHVIICNLEFEGGRGH-DVDGIQIKPNSRHIWIDRCSLRDYDD-----------------GLIDITRQSTDITVS 159 (262)
Q Consensus 98 ~i~~a~NVIIrnl~i~~~~~~-~~D~I~i~~~~~nVwIDHcs~s~~~D-----------------g~id~~~~s~nvTIS 159 (262)
.+ .+++++.|||+|++..+. ..-|+.++-.++...+-+|.|....| |.+|.--+...+-++
T Consensus 358 ~v-~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~g~QDTLy~~~~rq~y~~c~I~GtvDFIFG~a~avfq 436 (587)
T PLN02313 358 AA-VGERFLARDITFQNTAGPSKHQAVALRVGSDFSAFYQCDMFAYQDTLYVHSNRQFFVKCHITGTVDFIFGNAAAVLQ 436 (587)
T ss_pred EE-ECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeEecccchhccCCCcEEEEeeEEeeccceeccceeEEEE
Confidence 33 478999999999986532 22344444357889999999975433 334443444566788
Q ss_pred ccEEccCC-----ceeee--cCCCCCCCCcceEEEEeceeecCCCC------CC------CccccCeEEEEcceEEc
Q 024841 160 RCYFTQHD-----KTMLI--GADPSHVGDRCIRVTIHHCLFDGTRQ------RH------PRLRFGKVHLYNNYTRN 217 (262)
Q Consensus 160 ~~~f~~h~-----~~~l~--G~~d~~~~d~~~~vT~hhN~f~~~~~------R~------Pr~r~G~~hv~NN~~~n 217 (262)
+|.|.... ++.+- |..+. +...-+.||+|.+..... .. |.-.+.++-+.+.++.+
T Consensus 437 ~c~i~~r~~~~~~~~~iTAqgr~~~---~~~tG~v~~~c~i~~~~~~~~~~~~~~~yLGRPW~~ysr~v~~~s~i~~ 510 (587)
T PLN02313 437 DCDINARRPNSGQKNMVTAQGRSDP---NQNTGIVIQNCRIGGTSDLLAVKGTFPTYLGRPWKEYSRTVIMQSDISD 510 (587)
T ss_pred ccEEEEecCCCCCcceEEecCCCCC---CCCceEEEEecEEecCCccccccccchhhccCCCCCCccEEEEecccCC
Confidence 88887431 12221 22121 122357899998854322 11 22234556677776653
No 63
>PLN02671 pectinesterase
Probab=96.31 E-value=0.1 Score=49.50 Aligned_cols=98 Identities=10% Similarity=0.193 Sum_probs=64.0
Q ss_pred hHHHHhhcC----CCeEEEEEeeeEEEecceEEe---cCCeEEEeecc---ceEEec-----------C--------cEE
Q 024841 48 SLREGCRRR----EPLWIVFEVSGTIHLSSYLSV---SSYKTIDGRGQ---RIKLTG-----------K--------GLR 98 (262)
Q Consensus 48 sLr~al~~~----~pr~Ivf~vsG~I~l~~~i~i---~sn~TI~G~g~---~~~i~G-----------~--------gi~ 98 (262)
+.++||++- ..+++|+=..|+. .+.+.| .+++||.|.|. ...|.. . .+.
T Consensus 73 TIQ~AIdavP~~~~~~~~I~Ik~GvY--~EkV~I~~~k~~Itl~G~g~~~~~TvIt~~~~a~~~~~~g~~~gT~~SaTv~ 150 (359)
T PLN02671 73 TVQGAVDMVPDYNSQRVKIYILPGIY--REKVLVPKSKPYISFIGNESRAGDTVISWNDKASDLDSNGFELGTYRTASVT 150 (359)
T ss_pred CHHHHHHhchhcCCccEEEEEeCceE--EEEEEECCCCCeEEEEecCCCCCCEEEEcCCcccccccCCccccceeeEEEE
Confidence 788999642 2355555578888 466777 37899999863 333441 0 133
Q ss_pred EEeeccEEEeeeEEecCCC-----CCCCcEEEcCCCceEEEEeeeeecCCCCeeE
Q 024841 99 LKECEHVIICNLEFEGGRG-----HDVDGIQIKPNSRHIWIDRCSLRDYDDGLID 148 (262)
Q Consensus 99 i~~a~NVIIrnl~i~~~~~-----~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~id 148 (262)
+ .+++++.+||+|++... ...-|+.+.-.++++-+.+|.|....|-+++
T Consensus 151 v-~a~~F~a~nitfeNt~~~~~g~~~~QAVALrv~gDra~f~~c~f~G~QDTLy~ 204 (359)
T PLN02671 151 I-ESDYFCATGITFENTVVAEPGGQGMQAVALRISGDKAFFYKVRVLGAQDTLLD 204 (359)
T ss_pred E-ECCceEEEeeEEEcCCCCCCCCCCccEEEEEEcCccEEEEcceEeccccccEe
Confidence 4 47899999999997631 1123444433468899999999876666653
No 64
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=96.27 E-value=0.042 Score=47.80 Aligned_cols=114 Identities=18% Similarity=0.206 Sum_probs=70.1
Q ss_pred ecCcEEEEeeccEEEeeeEEecCCC----CCCC-cEEEcCCCceEEEEeeeeecCCCCeeEe------eeCCccEEEecc
Q 024841 93 TGKGLRLKECEHVIICNLEFEGGRG----HDVD-GIQIKPNSRHIWIDRCSLRDYDDGLIDI------TRQSTDITVSRC 161 (262)
Q Consensus 93 ~G~gi~i~~a~NVIIrnl~i~~~~~----~~~D-~I~i~~~~~nVwIDHcs~s~~~Dg~id~------~~~s~nvTIS~~ 161 (262)
.++.|.+.+++||+|.|.+|..+.. ...| .+.+..++++|-|-+|-|......++.- ......||+-+|
T Consensus 74 ~~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~vTiS~n~f~~~~k~~l~G~~d~~~~~~~~~vT~hhN 153 (200)
T PF00544_consen 74 DGDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNVTISNNIFDNHNKTMLIGSSDSNSTDRGLRVTFHHN 153 (200)
T ss_dssp S--SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEEEEES-EEEEEEETCEESSCTTCGGGTTEEEEEES-
T ss_pred CCCeEEEEecccEEEeccEEeccccccccccCCceEEEEeCCceEEEEchhccccccccccCCCCCccccCCceEEEEeE
Confidence 4567999999999999999998721 1134 4577657889999999987643322211 112358999999
Q ss_pred EEccCC-ceeeecCCCCCCCCcceEEEEeceeecCCCCCCCcccc-CeEEEEcceE
Q 024841 162 YFTQHD-KTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLRF-GKVHLYNNYT 215 (262)
Q Consensus 162 ~f~~h~-~~~l~G~~d~~~~d~~~~vT~hhN~f~~~~~R~Pr~r~-G~~hv~NN~~ 215 (262)
+|.+.. +.=++. .-.+-+.+|+|.+.....=.++. +++-+.||||
T Consensus 154 ~f~~~~~R~P~~r---------~G~~Hv~NN~~~~~~~y~i~~~~~a~v~~E~N~F 200 (200)
T PF00544_consen 154 YFANTNSRNPRVR---------FGYVHVYNNYYYNWSGYAIGARSGAQVLVENNYF 200 (200)
T ss_dssp EEEEEEE-TTEEC---------SCEEEEES-EEEEECSESEEEETTEEEEEES-EE
T ss_pred EECchhhCCCccc---------ccEEEEEEeeeECCCCEEEEccCCeEEEEECcCC
Confidence 997532 111111 12578889999877766655554 4678999987
No 65
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=96.14 E-value=0.031 Score=47.75 Aligned_cols=102 Identities=25% Similarity=0.427 Sum_probs=56.7
Q ss_pred CeEEEeeccceEEe--cCcEEEEeeccEEEeeeEEecCCCCCCCcEE-------------------EcCCCceEEEEeee
Q 024841 80 YKTIDGRGQRIKLT--GKGLRLKECEHVIICNLEFEGGRGHDVDGIQ-------------------IKPNSRHIWIDRCS 138 (262)
Q Consensus 80 n~TI~G~g~~~~i~--G~gi~i~~a~NVIIrnl~i~~~~~~~~D~I~-------------------i~~~~~nVwIDHcs 138 (262)
+++|.|... ... ..++.+..+.++.|+|++++... .+++. ++.+..+++++.|.
T Consensus 98 nl~i~~~~~--~~~~~~~~i~~~~~~~~~i~nv~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (225)
T PF12708_consen 98 NLTIDGNGI--DPNNNNNGIRFNSSQNVSISNVRIENSG---GDGIYFNTGTDYRIIGSTHVSGIFIDNGSNNVIVNNCI 172 (225)
T ss_dssp EEEEEETCG--CE-SCEEEEEETTEEEEEEEEEEEES-S---S-SEEEECCEECEEECCEEEEEEEEESCEEEEEEECEE
T ss_pred eeEEEcccc--cCCCCceEEEEEeCCeEEEEeEEEEccC---ccEEEEEccccCcEeecccceeeeeccceeEEEECCcc
Confidence 467776532 221 34577777899999999999753 22222 22112233345555
Q ss_pred eecCCCCeeEeeeCCccEEEeccEEcc-CCceeeecCCCCCCCCcceEEEEeceeecCCC
Q 024841 139 LRDYDDGLIDITRQSTDITVSRCYFTQ-HDKTMLIGADPSHVGDRCIRVTIHHCLFDGTR 197 (262)
Q Consensus 139 ~s~~~Dg~id~~~~s~nvTIS~~~f~~-h~~~~l~G~~d~~~~d~~~~vT~hhN~f~~~~ 197 (262)
+..+.++ + ..+.++++++||.|.. ...+..+-... ++++.+|.|.+|.
T Consensus 173 ~~~~~~g-~--~~~~~~~~i~n~~~~~~~~~gi~i~~~~--------~~~i~n~~i~~~~ 221 (225)
T PF12708_consen 173 FNGGDNG-I--ILGNNNITISNNTFEGNCGNGINIEGGS--------NIIISNNTIENCD 221 (225)
T ss_dssp EESSSCS-E--ECEEEEEEEECEEEESSSSESEEEEECS--------EEEEEEEEEESSS
T ss_pred ccCCCce-e--EeecceEEEEeEEECCccceeEEEECCe--------EEEEEeEEEECCc
Confidence 5556666 2 1223678888888876 44444442221 4666777777664
No 66
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=96.14 E-value=0.13 Score=49.67 Aligned_cols=99 Identities=14% Similarity=0.238 Sum_probs=66.1
Q ss_pred hhHHHHhhcC-----CCeEEEEEeeeEEEecceEEe---cCCeEEEeecc---ceEEecC--------------------
Q 024841 47 GSLREGCRRR-----EPLWIVFEVSGTIHLSSYLSV---SSYKTIDGRGQ---RIKLTGK-------------------- 95 (262)
Q Consensus 47 GsLr~al~~~-----~pr~Ivf~vsG~I~l~~~i~i---~sn~TI~G~g~---~~~i~G~-------------------- 95 (262)
-+.++||++. ..|++|+=..|+.+ +.+.| .+++||.|.|. ...|...
T Consensus 95 ~TIQaAIdAa~~~~~~~r~~I~Ik~GvY~--EkV~Ip~~kp~ItL~G~G~~~~~TvIt~~~~~~~~~~~~~~~~~~~g~~ 172 (422)
T PRK10531 95 TTVQAAVDAAIAKRTNKRQYIAVMPGTYQ--GTVYVPAAAPPITLYGTGEKPIDVKIGLALDGEMSPADWRANVNPRGKY 172 (422)
T ss_pred cCHHHHHhhccccCCCceEEEEEeCceeE--EEEEeCCCCceEEEEecCCCCCceEEEecCccccccccccccccccccc
Confidence 3789999742 23566665679884 66777 47899999753 2334321
Q ss_pred ---------------------c------EEEEeeccEEEeeeEEecCCCC-----CCCcEEEcCCCceEEEEeeeeecCC
Q 024841 96 ---------------------G------LRLKECEHVIICNLEFEGGRGH-----DVDGIQIKPNSRHIWIDRCSLRDYD 143 (262)
Q Consensus 96 ---------------------g------i~i~~a~NVIIrnl~i~~~~~~-----~~D~I~i~~~~~nVwIDHcs~s~~~ 143 (262)
+ +.+ .+++++.+||+|++.... ..-|+.+.-.++.+.+.+|.|....
T Consensus 173 ~~~~p~~y~~d~~~~~~~~~~gT~~SATv~v-~ad~F~a~NLTf~Ntag~~~~~~~~QAVALrv~GDra~fy~C~flG~Q 251 (422)
T PRK10531 173 MPGKPAWYMYDSCQSKRAATIGTLCSAVFWS-QNNGLQLQNLTIENTLGDSVDAGNHPAVALRTDGDKVQIENVNILGRQ 251 (422)
T ss_pred cccccccccccccccccCCCcCceeeEEEEE-ECCCEEEEeeEEEeCCCCCCCCCcceeEEEEEcCCcEEEEeeEEeccc
Confidence 0 233 479999999999986431 1234444335788999999998777
Q ss_pred CCeeE
Q 024841 144 DGLID 148 (262)
Q Consensus 144 Dg~id 148 (262)
|-++.
T Consensus 252 DTLy~ 256 (422)
T PRK10531 252 DTFFV 256 (422)
T ss_pred ceeee
Confidence 77664
No 67
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=95.84 E-value=0.14 Score=47.29 Aligned_cols=137 Identities=17% Similarity=0.159 Sum_probs=87.9
Q ss_pred EEEEeeccEEEeeeEEecCCC---CCCCcEEEcCCCceEEEEeeeeecCC-----CCeeEeeeCCccEEEeccEEccCCc
Q 024841 97 LRLKECEHVIICNLEFEGGRG---HDVDGIQIKPNSRHIWIDRCSLRDYD-----DGLIDITRQSTDITVSRCYFTQHDK 168 (262)
Q Consensus 97 i~i~~a~NVIIrnl~i~~~~~---~~~D~I~i~~~~~nVwIDHcs~s~~~-----Dg~id~~~~s~nvTIS~~~f~~h~~ 168 (262)
+.|+.++|+.| .+... --+-++.|+ .+.||+|.+.+|.... +..|.+..++.+|=|-+|.|..+.+
T Consensus 95 ~~iki~sNkTi-----vG~g~~a~~~g~gl~i~-~a~NVIirNltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~s~ 168 (345)
T COG3866 95 ITIKIGSNKTI-----VGSGADATLVGGGLKIR-DAGNVIIRNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSGGSY 168 (345)
T ss_pred EEEeeccccEE-----EeeccccEEEeceEEEE-eCCcEEEEeeEEEeeccCCCCCCcEEeccCCeEEEEEeeEeccccc
Confidence 66665555544 43321 124678887 6899999999998654 3347777778899999999998665
Q ss_pred eeeecCCCCCC--CCcceEEEEeceeecCCCCC---------CCccccC--eEEEEcceEEcCcceeEEeccCceEEEEc
Q 024841 169 TMLIGADPSHV--GDRCIRVTIHHCLFDGTRQR---------HPRLRFG--KVHLYNNYTRNWGIYAVCASVESQIYSQC 235 (262)
Q Consensus 169 ~~l~G~~d~~~--~d~~~~vT~hhN~f~~~~~R---------~Pr~r~G--~~hv~NN~~~n~~~~~~~~~~~a~v~~e~ 235 (262)
..---+.|... ......||+-.|+|++...- ++. .| ++.+-+|||.|.-..+=..+ -..+.+-+
T Consensus 169 ~~~~~h~DGl~Dik~~AnyITiS~n~fhdh~Kssl~G~sD~~~~~--~~~~kvT~hhNyFkn~~qR~PriR-fG~vHvyN 245 (345)
T COG3866 169 NASGSHGDGLVDIKKDANYITISYNKFHDHDKSSLLGSSDSSNYD--DGKYKVTIHHNYFKNLYQRGPRIR-FGMVHVYN 245 (345)
T ss_pred cccccCCCccEEeccCCcEEEEEeeeeecCCeeeeeccCCccccc--CCceeEEEeccccccccccCCceE-eeEEEEec
Confidence 42211222221 22335899999999764332 222 23 36788999998654433333 34677899
Q ss_pred eEEecCC
Q 024841 236 NIYEAGQ 242 (262)
Q Consensus 236 N~F~~~~ 242 (262)
|||+.-+
T Consensus 246 NYy~~~~ 252 (345)
T COG3866 246 NYYEGNP 252 (345)
T ss_pred cccccCc
Confidence 9999544
No 68
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=94.06 E-value=0.3 Score=48.73 Aligned_cols=134 Identities=22% Similarity=0.299 Sum_probs=84.9
Q ss_pred CCCeEEEEEeeeEEEec------ce---EEe--cCCeEEEeeccceEE----ecCcEEEEeeccEEEeeeEEecCCCCCC
Q 024841 56 REPLWIVFEVSGTIHLS------SY---LSV--SSYKTIDGRGQRIKL----TGKGLRLKECEHVIICNLEFEGGRGHDV 120 (262)
Q Consensus 56 ~~pr~Ivf~vsG~I~l~------~~---i~i--~sn~TI~G~g~~~~i----~G~gi~i~~a~NVIIrnl~i~~~~~~~~ 120 (262)
..|+.+.|.-...+.+. ++ +.+ .+++|+.+. .+.. --.||.+..++||.|.+.+|..+ .
T Consensus 236 ~rp~~~~l~~c~NV~~~g~~i~ns~~~~~h~~~~~nl~~~nl--~I~~~~~~NtDG~d~~sc~NvlI~~~~fdtg----D 309 (542)
T COG5434 236 VRPRTVVLKGCRNVLLEGLNIKNSPLWTVHPVDCDNLTFRNL--TIDANRFDNTDGFDPGSCSNVLIEGCRFDTG----D 309 (542)
T ss_pred cCCceEEEeccceEEEeeeEecCCCcEEEeeecccCceecce--EEECCCCCCCCccccccceeEEEeccEEecC----C
Confidence 46788887654444332 11 111 245666554 1111 22478999999999999999975 3
Q ss_pred CcEEEc-----------CCCceEEEEeeeeecCCCCeeEee---eCCccEEEeccEEccCCceeeecCCCCCCCCcceEE
Q 024841 121 DGIQIK-----------PNSRHIWIDRCSLRDYDDGLIDIT---RQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCIRV 186 (262)
Q Consensus 121 D~I~i~-----------~~~~nVwIDHcs~s~~~Dg~id~~---~~s~nvTIS~~~f~~h~~~~l~G~~d~~~~d~~~~v 186 (262)
|+|.+. .-+++|||-||-|+.+.-+...-. .+-.+|++.+|.|.+...+.-|.+.+... ...-+|
T Consensus 310 D~I~iksg~~~~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gse~~ggv~ni~ved~~~~~~d~GLRikt~~~~g-G~v~nI 388 (542)
T COG5434 310 DCIAIKSGAGLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSEMGGGVQNITVEDCVMDNTDRGLRIKTNDGRG-GGVRNI 388 (542)
T ss_pred ceEEeecccCCcccccccccccEEEecceecccccceEeeeecCCceeEEEEEeeeeccCcceeeeeeecccc-eeEEEE
Confidence 555553 125789999999998887765432 23579999999999877666555443221 112367
Q ss_pred EEeceeecCC
Q 024841 187 TIHHCLFDGT 196 (262)
Q Consensus 187 T~hhN~f~~~ 196 (262)
+|+.+...+.
T Consensus 389 ~~~~~~~~nv 398 (542)
T COG5434 389 VFEDNKMRNV 398 (542)
T ss_pred EEecccccCc
Confidence 7776666554
No 69
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=93.38 E-value=0.19 Score=48.52 Aligned_cols=57 Identities=18% Similarity=0.244 Sum_probs=27.8
Q ss_pred EEEeceeecCCCCC--CCcccc-CeE-EEEcceEEcCccee----EE---ecc---------CceEEEEceEEecCC
Q 024841 186 VTIHHCLFDGTRQR--HPRLRF-GKV-HLYNNYTRNWGIYA----VC---ASV---------ESQIYSQCNIYEAGQ 242 (262)
Q Consensus 186 vT~hhN~f~~~~~R--~Pr~r~-G~~-hv~NN~~~n~~~~~----~~---~~~---------~a~v~~e~N~F~~~~ 242 (262)
-++..|+|-.+..+ .+-+|. |.- .|+|||+++..... +. ... --.+.+++|-|.+..
T Consensus 247 n~V~gN~FiGng~~~~tGGIRIi~~~H~I~nNY~~gl~g~~~~~~~~v~ng~p~s~ln~y~qv~nv~I~~NT~In~~ 323 (425)
T PF14592_consen 247 NTVEGNVFIGNGVKEGTGGIRIIGEGHTIYNNYFEGLTGTRFRGALAVMNGVPNSPLNRYDQVKNVLIANNTFINCK 323 (425)
T ss_dssp -EEES-EEEE-SSSS-B--EEE-SBS-EEES-EEEESSB-TTTTSEE-EEE--BSTTSTT---BSEEEES-EEES-S
T ss_pred ceEeccEEecCCCcCCCCceEEecCCcEEEcceeeccccceeecceeeccCCCCCCcccccccceeEEecceEEccC
Confidence 46677788665543 466664 554 47899998754321 11 100 124677888888766
No 70
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=90.52 E-value=2.7 Score=38.24 Aligned_cols=64 Identities=22% Similarity=0.414 Sum_probs=48.2
Q ss_pred eeccEEEeeeEEecCCCCCCCcEEEcCCCceEEEEeeeeecCCCCeeEeeeCCccEEEeccEEccCCceeeecCCC
Q 024841 101 ECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADP 176 (262)
Q Consensus 101 ~a~NVIIrnl~i~~~~~~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~id~~~~s~nvTIS~~~f~~h~~~~l~G~~d 176 (262)
+++|..|.|.+|..|.. + +. .++||-+++|.|.|-+ -.++ ++++.|.+|.|..-.++.+|.+.+
T Consensus 17 ~~~d~~l~~~~f~dGES----~--LK-es~nI~~~~~~F~~KY----P~Wh-~~~~~i~~~~f~~~aRa~iWYs~~ 80 (277)
T PF12541_consen 17 GSHDLRLENCTFADGES----P--LK-ESRNIELKNCIFKWKY----PLWH-SDNIKIENCYFTEMARAAIWYSNN 80 (277)
T ss_pred ccCCCEEEeeEEeCCCc----c--cc-cccceEEECCEEeeEC----ceEE-ECCeEEEeeEEeecceeeeeEeCC
Confidence 48899999999996642 2 43 6889999999998743 1222 467888999999888888887653
No 71
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=90.12 E-value=2.4 Score=36.66 Aligned_cols=89 Identities=21% Similarity=0.130 Sum_probs=52.2
Q ss_pred ccEEEeccEEccCCc--eeeecCCCCCCCCcceEEEEeceeecCCC-CCCCccccC-------eEEEEcceEEcCcceeE
Q 024841 154 TDITVSRCYFTQHDK--TMLIGADPSHVGDRCIRVTIHHCLFDGTR-QRHPRLRFG-------KVHLYNNYTRNWGIYAV 223 (262)
Q Consensus 154 ~nvTIS~~~f~~h~~--~~l~G~~d~~~~d~~~~vT~hhN~f~~~~-~R~Pr~r~G-------~~hv~NN~~~n~~~~~~ 223 (262)
++|.|=+|.+.+-.- .-|+|...+...+...+|-+|||.|-.+. .+++....| ..-+.||+|+.....++
T Consensus 2 ~dIEIYnN~I~~T~g~GIWl~gy~~~ysk~~a~nVhIhhN~fY~tGtn~~~~wvGGIv~sGF~ntlIENNVfDG~y~aai 81 (198)
T PF08480_consen 2 DDIEIYNNTIYNTYGPGIWLFGYDGSYSKDSAKNVHIHHNIFYDTGTNPNIDWVGGIVTSGFYNTLIENNVFDGVYHAAI 81 (198)
T ss_pred CceEEecceeecccCceEEEEecCCCCCccccccEEEECcEeecCCcCCCCceeeeEEeccccccEEEeeeecccccceE
Confidence 467777888876543 34667765555555568899999886543 223333323 23688888887543333
Q ss_pred E----------eccCceEEEEceEEecCC
Q 024841 224 C----------ASVESQIYSQCNIYEAGQ 242 (262)
Q Consensus 224 ~----------~~~~a~v~~e~N~F~~~~ 242 (262)
- .+.+-...+.+|.+.+..
T Consensus 82 ~~~y~~~~~sp~gsgyttivRNNII~NT~ 110 (198)
T PF08480_consen 82 AQMYPDYDLSPKGSGYTTIVRNNIIVNTR 110 (198)
T ss_pred EEEecccccCCCCCceEEEEEcceEeeee
Confidence 2 112334556677776643
No 72
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=90.10 E-value=1.9 Score=40.70 Aligned_cols=93 Identities=17% Similarity=0.111 Sum_probs=68.3
Q ss_pred eEEecCCeEEEeeccceEEecC--cEEEEeeccEEEeeeEEecCCC----CCCCcEEEcCCCceEEEEeeeeecCCCCee
Q 024841 74 YLSVSSYKTIDGRGQRIKLTGK--GLRLKECEHVIICNLEFEGGRG----HDVDGIQIKPNSRHIWIDRCSLRDYDDGLI 147 (262)
Q Consensus 74 ~i~i~sn~TI~G~g~~~~i~G~--gi~i~~a~NVIIrnl~i~~~~~----~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~i 147 (262)
.|-+.+..|-++.-. ..|.|. ||.+.++.++.|+.-+|.+... ..++||.+. +++.+-|--+.++.+.|+++
T Consensus 99 gI~v~~~at~A~Vr~-N~l~~n~~Gi~l~~s~d~~i~~n~i~G~~~~r~~~rGnGI~vy-Na~~a~V~~ndisy~rDgIy 176 (408)
T COG3420 99 GIFVGRTATGAVVRH-NDLIGNSFGIYLHGSADVRIEGNTIQGLADLRVAERGNGIYVY-NAPGALVVGNDISYGRDGIY 176 (408)
T ss_pred eEEeccCcccceEEc-ccccccceEEEEeccCceEEEeeEEeeccccchhhccCceEEE-cCCCcEEEcCccccccceEE
Confidence 355555555555422 134443 5788899999999999987642 358999998 88999999999999999966
Q ss_pred EeeeCCccEEEeccEEccCCcee
Q 024841 148 DITRQSTDITVSRCYFTQHDKTM 170 (262)
Q Consensus 148 d~~~~s~nvTIS~~~f~~h~~~~ 170 (262)
. .-+..-+++.|.|++..++.
T Consensus 177 ~--~~S~~~~~~gnr~~~~Rygv 197 (408)
T COG3420 177 S--DTSQHNVFKGNRFRDLRYGV 197 (408)
T ss_pred E--cccccceecccchhheeeeE
Confidence 3 34677888999888765543
No 73
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism]
Probab=89.75 E-value=6 Score=37.25 Aligned_cols=145 Identities=11% Similarity=0.176 Sum_probs=90.9
Q ss_pred hhHHHHhhc-----CCCeEEEEEeeeEEEecceEEec-CC--eEEEeeccc--eEEe-----c---C--cE---------
Q 024841 47 GSLREGCRR-----REPLWIVFEVSGTIHLSSYLSVS-SY--KTIDGRGQR--IKLT-----G---K--GL--------- 97 (262)
Q Consensus 47 GsLr~al~~-----~~pr~Ivf~vsG~I~l~~~i~i~-sn--~TI~G~g~~--~~i~-----G---~--gi--------- 97 (262)
-|.++|+++ ...|.+++-+.|+. ++.+.|. ++ +|+.|.+.. -+.. + . +.
T Consensus 95 ~TIQaAvdaA~~~~~~kr~yI~vk~GvY--~e~v~Vp~~~~~ITLyGed~~~~~tvIg~n~aagp~np~~~m~n~c~ss~ 172 (405)
T COG4677 95 TTIQAAVDAAIIKRTNKRQYIAVKAGVY--QETVYVPAAPGGITLYGEDEKPIDTVIGLNLAAGPGNPAGYMYNSCQSSR 172 (405)
T ss_pred HHHHHHHhhhcccCCCceEEEEEcccee--ceeEEecCCCCceeEEecCCCCcceEEEEecCCCCCCccceeecccccch
Confidence 467888864 23577777778888 4667775 44 899998553 1221 1 1 11
Q ss_pred ------------EEEeeccEEEeeeEEecCCCC-----CCCcEEEcCCCceEEEEeeeeecCCCCeeEeeeCCc------
Q 024841 98 ------------RLKECEHVIICNLEFEGGRGH-----DVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQST------ 154 (262)
Q Consensus 98 ------------~i~~a~NVIIrnl~i~~~~~~-----~~D~I~i~~~~~nVwIDHcs~s~~~Dg~id~~~~s~------ 154 (262)
.+ ..++.+.+||+|+..... .--++.+...++.+.+..|.+-...|-++.-..+..
T Consensus 173 ~~tigt~~Sat~~v-~~ndf~~~nlT~en~~gd~~lagn~~AVaL~~dgDka~frnv~llg~QdTlFv~~~~~~~~~~tn 251 (405)
T COG4677 173 SATIGTLCSATFWV-QNNDFQLQNLTIENTLGDGVLAGNHPAVALATDGDKAIFRNVNLLGNQDTLFVGNSGVQNRLETN 251 (405)
T ss_pred hhhhhhhhhhhhee-ecCCcccccceeecccCCccccCCceeEEEEecCCceeeeeeeEeeccceEEecCCCCccccccC
Confidence 11 257788999999864321 123555655678999999999888887664432211
Q ss_pred ---cEEEeccEEccCCceeeecCCCCCCCCcceEEEEeceeecCCCCCCCccc
Q 024841 155 ---DITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLR 204 (262)
Q Consensus 155 ---nvTIS~~~f~~h~~~~l~G~~d~~~~d~~~~vT~hhN~f~~~~~R~Pr~r 204 (262)
.--+.||+|..+ --+++|+. .+-||+|-|.-+..|.|...
T Consensus 252 ~~~R~yftNsyI~Gd-vDfIfGsg---------taVFd~c~i~~~d~r~~~~g 294 (405)
T COG4677 252 RQPRTYFTNSYIEGD-VDFIFGSG---------TAVFDNCEIQVVDSRTQQEG 294 (405)
T ss_pred cchhhheecceeccc-ceEEeccc---------eEEeccceEEEeccCCCcce
Confidence 222346666644 23455654 46778888888888876654
No 74
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=86.62 E-value=12 Score=34.28 Aligned_cols=30 Identities=23% Similarity=0.370 Sum_probs=20.2
Q ss_pred EEEEeceeecCCCCCCCccccCeEEEEcceEEc
Q 024841 185 RVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRN 217 (262)
Q Consensus 185 ~vT~hhN~f~~~~~R~Pr~r~G~~hv~NN~~~n 217 (262)
++||-+|..... .|++-.-.+.+.|+-+.+
T Consensus 195 NltliNC~I~g~---QpLCY~~~L~l~nC~~~~ 224 (277)
T PF12541_consen 195 NLTLINCTIEGT---QPLCYCDNLVLENCTMID 224 (277)
T ss_pred CeEEEEeEEecc---CccEeecceEEeCcEeec
Confidence 678877776543 466655567788887765
No 75
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=78.61 E-value=28 Score=30.84 Aligned_cols=91 Identities=18% Similarity=0.199 Sum_probs=42.3
Q ss_pred eeEEEecceEEecCCeEEEeeccce-----EEec--------CcEEEEeeccEEEeeeEEecCCCCCCCcEEEcCCCceE
Q 024841 66 SGTIHLSSYLSVSSYKTIDGRGQRI-----KLTG--------KGLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHI 132 (262)
Q Consensus 66 sG~I~l~~~i~i~sn~TI~G~g~~~-----~i~G--------~gi~i~~a~NVIIrnl~i~~~~~~~~D~I~i~~~~~nV 132 (262)
.|+..+++++.|.+.-|.+|.+... .+.+ .-|.|. +-..|+|+.|-.. ..|||... + ..
T Consensus 13 ~~~~~~~~~i~V~aG~~fDG~~k~~~~~~~~~~~~~q~e~q~~vF~le--~GatlkNvIiG~~---~~dGIHC~-G--~C 84 (215)
T PF03211_consen 13 TGTVTVSSTIVVKAGEVFDGGMKRYDRGPSACGDGGQSEDQDPVFILE--DGATLKNVIIGAN---QADGIHCK-G--SC 84 (215)
T ss_dssp T-EEEESS-EEE-TTEEEEEEEEEEEECCCTT--SSSGSC---SEEEE--TTEEEEEEEETSS----TT-EEEE-S--CE
T ss_pred CCceEcccCeEECCCceEeCCeeEEccCCCccCCCCcCCccceEEEec--CCCEEEEEEEcCC---CcCceEEc-C--CE
Confidence 4555666677776666666642210 0110 015553 3345566555321 34666665 2 34
Q ss_pred EEEeeeeecCCCCeeEeeeCCccEEEeccEEc
Q 024841 133 WIDRCSLRDYDDGLIDITRQSTDITVSRCYFT 164 (262)
Q Consensus 133 wIDHcs~s~~~Dg~id~~~~s~nvTIS~~~f~ 164 (262)
.|+++-+.+-.+..+.++..+..++|..+-+.
T Consensus 85 tl~NVwwedVcEDA~T~kg~~~~~~I~ggga~ 116 (215)
T PF03211_consen 85 TLENVWWEDVCEDAATFKGDGGTVTIIGGGAR 116 (215)
T ss_dssp EEEEEEESS-SSESEEEESSEEEEEEESTEEE
T ss_pred EEEEEEecccceeeeEEcCCCceEEEeCCccc
Confidence 55555555555555666544446666666544
No 76
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=72.74 E-value=8.7 Score=24.51 Aligned_cols=39 Identities=21% Similarity=0.225 Sum_probs=19.7
Q ss_pred EEEcCCCceEEEEeeeeecCCCCeeEeeeCCccEEEeccEEc
Q 024841 123 IQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFT 164 (262)
Q Consensus 123 I~i~~~~~nVwIDHcs~s~~~Dg~id~~~~s~nvTIS~~~f~ 164 (262)
|.+. .+++..|..|.++...|| +.+. .+.+-+|..|.|.
T Consensus 2 I~l~-~s~~~~i~~N~i~~~~~G-I~~~-~s~~n~i~~N~~~ 40 (44)
T TIGR03804 2 IYLE-SSSNNTLENNTASNNSYG-IYLT-DSSNNTLSNNTAS 40 (44)
T ss_pred EEEE-ecCCCEEECcEEeCCCCE-EEEE-eCCCCEeECCEEE
Confidence 4444 344445666666666664 3332 2345555555554
No 77
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=72.20 E-value=27 Score=34.74 Aligned_cols=120 Identities=17% Similarity=0.362 Sum_probs=65.9
Q ss_pred cEEEEeeccEEEeeeEEecCCCC-CCCcEEEcCCCceEEEEeeeeecCCCCe-----------------eEeeeCCccEE
Q 024841 96 GLRLKECEHVIICNLEFEGGRGH-DVDGIQIKPNSRHIWIDRCSLRDYDDGL-----------------IDITRQSTDIT 157 (262)
Q Consensus 96 gi~i~~a~NVIIrnl~i~~~~~~-~~D~I~i~~~~~nVwIDHcs~s~~~Dg~-----------------id~~~~s~nvT 157 (262)
.+.+. +++++.|||+|++.... ..-|+.++-.+.++-+.+|.|...-|-+ +|+--+....-
T Consensus 264 T~~v~-~~~F~a~nitf~Ntag~~~~QAvAl~v~~D~~~fy~c~~~G~QDTLy~~~~rqyy~~C~I~G~vDFIFG~a~av 342 (497)
T PLN02698 264 TFTIT-GDGFIARDIGFKNAAGPKGEQAIALSITSDHSVLYRCSIAGYQDTLYAAALRQFYRECDIYGTIDFIFGNAAAV 342 (497)
T ss_pred eEEEE-CCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeecccchheeCCCcEEEEeeEEEeccceEeccccee
Confidence 46664 89999999999976532 2234444435788999999987544443 33333344556
Q ss_pred EeccEEccCC-----ceeeecCCCCCCCCcceEEEEeceeecCCCCCC------------CccccCeEEEEcceEEc
Q 024841 158 VSRCYFTQHD-----KTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRH------------PRLRFGKVHLYNNYTRN 217 (262)
Q Consensus 158 IS~~~f~~h~-----~~~l~G~~d~~~~d~~~~vT~hhN~f~~~~~R~------------Pr~r~G~~hv~NN~~~n 217 (262)
+++|.|.... ++.+.-.+.. ..+...-+.||+|.+.....=. |.-.+.++-+.|.++..
T Consensus 343 f~~C~i~~~~~~~~~~~~iTAq~r~-~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRPW~~ysr~vf~~s~l~~ 418 (497)
T PLN02698 343 FQNCYLFLRRPHGKSYNVILANGRS-DPGQNTGFSLQSCRIRTSSDFSPVKHSYSSYLGRPWKKYSRAIVMESYIDD 418 (497)
T ss_pred ecccEEEEecCCCCCceEEEecCCC-CCCCCceEEEEeeEEecCCcccccccccceeccCCCCCCceEEEEecccCC
Confidence 6777775321 1111111100 0112235788999886543211 22223466677777543
No 78
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=67.75 E-value=42 Score=29.15 Aligned_cols=73 Identities=12% Similarity=0.104 Sum_probs=45.4
Q ss_pred CCceEEEEeeeeecCC-CCeeEe-----eeCCccEEEeccEEccCCceeeec-CCCC-CCC-CcceEEEEeceeecCCCC
Q 024841 128 NSRHIWIDRCSLRDYD-DGLIDI-----TRQSTDITVSRCYFTQHDKTMLIG-ADPS-HVG-DRCIRVTIHHCLFDGTRQ 198 (262)
Q Consensus 128 ~~~nVwIDHcs~s~~~-Dg~id~-----~~~s~nvTIS~~~f~~h~~~~l~G-~~d~-~~~-d~~~~vT~hhN~f~~~~~ 198 (262)
.+++|+|.|+.|.... ...++. ..+-.+.-|.||.|+....+.+.- ..+. ... ..+...++.+|.+.++..
T Consensus 32 ~a~nVhIhhN~fY~tGtn~~~~wvGGIv~sGF~ntlIENNVfDG~y~aai~~~y~~~~~sp~gsgyttivRNNII~NT~~ 111 (198)
T PF08480_consen 32 SAKNVHIHHNIFYDTGTNPNIDWVGGIVTSGFYNTLIENNVFDGVYHAAIAQMYPDYDLSPKGSGYTTIVRNNIIVNTRK 111 (198)
T ss_pred ccccEEEECcEeecCCcCCCCceeeeEEeccccccEEEeeeecccccceEEEEecccccCCCCCceEEEEEcceEeeeee
Confidence 4679999999997632 222221 233457889999999866554432 1111 122 224566778899999997
Q ss_pred CC
Q 024841 199 RH 200 (262)
Q Consensus 199 R~ 200 (262)
|.
T Consensus 112 r~ 113 (198)
T PF08480_consen 112 RK 113 (198)
T ss_pred cc
Confidence 74
No 79
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=56.95 E-value=38 Score=32.56 Aligned_cols=30 Identities=10% Similarity=0.000 Sum_probs=13.2
Q ss_pred EEEEcceEEcCcceeEEeccCceEEEEceEEec
Q 024841 208 VHLYNNYTRNWGIYAVCASVESQIYSQCNIYEA 240 (262)
Q Consensus 208 ~hv~NN~~~n~~~~~~~~~~~a~v~~e~N~F~~ 240 (262)
+.|-++.|+.... ++ -.++...+-+|.|.+
T Consensus 190 lsVk~C~FekC~i-gi--~s~G~~~i~hn~~~e 219 (386)
T PF01696_consen 190 LSVKKCVFEKCVI-GI--VSEGPARIRHNCASE 219 (386)
T ss_pred EEeeheeeeheEE-EE--EecCCeEEecceecc
Confidence 3445555554321 33 223344445565554
No 80
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=52.48 E-value=1e+02 Score=31.11 Aligned_cols=65 Identities=23% Similarity=0.332 Sum_probs=36.6
Q ss_pred cEEEEeec----cEEEeeeEEecCCCCCCCcEEEcCCCceEEEEeeeeecCCCCeeEeeeCCccEEEeccEEccC
Q 024841 96 GLRLKECE----HVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQH 166 (262)
Q Consensus 96 gi~i~~a~----NVIIrnl~i~~~~~~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~id~~~~s~nvTIS~~~f~~h 166 (262)
.+.+.+.. +..|+|++.-+...+..|||.+. ..+ .|++|-|.-.+|. |-+. -++++|++|.+...
T Consensus 345 Sm~l~g~~~~~~~~~i~nyKqVGaW~~qtDGi~ly-~nS--~i~dcF~h~nDD~-iKlY--hS~v~v~~~ViWk~ 413 (582)
T PF03718_consen 345 SMDLYGNENDKFSMNISNYKQVGAWYFQTDGIELY-PNS--TIRDCFIHVNDDA-IKLY--HSNVSVSNTVIWKN 413 (582)
T ss_dssp SEEEESSSGGGEEEEEEEEEEE---CTT----B---TT---EEEEEEEEESS-S-EE----STTEEEEEEEEEE-
T ss_pred eEEecCCccccccceeeceeeeeeEEeccCCcccc-CCC--eeeeeEEEecCch-hhee--ecCcceeeeEEEec
Confidence 46666444 37899999998888889999997 333 4577777767776 4343 36899999988753
No 81
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=42.76 E-value=68 Score=20.20 Aligned_cols=41 Identities=15% Similarity=0.168 Sum_probs=28.1
Q ss_pred cEEEEeeccEEEeeeEEecCCCCCCCcEEEcCCCceEEEEeeeeec
Q 024841 96 GLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRD 141 (262)
Q Consensus 96 gi~i~~a~NVIIrnl~i~~~~~~~~D~I~i~~~~~nVwIDHcs~s~ 141 (262)
||.+..+++..|++=+|... .+||.+. .+++-.|..+.++.
T Consensus 1 GI~l~~s~~~~i~~N~i~~~----~~GI~~~-~s~~n~i~~N~~~~ 41 (44)
T TIGR03804 1 GIYLESSSNNTLENNTASNN----SYGIYLT-DSSNNTLSNNTASS 41 (44)
T ss_pred CEEEEecCCCEEECcEEeCC----CCEEEEE-eCCCCEeECCEEEc
Confidence 46676677777777777753 4689887 56666677776654
No 82
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=36.08 E-value=3.3e+02 Score=24.57 Aligned_cols=73 Identities=18% Similarity=0.289 Sum_probs=46.2
Q ss_pred cCcEEEEeeccEEEeeeEEecCCCCCCCcEEEc-----CCCceEEEEeeeeecCCCCeeEeee--CCccEEEeccEEccC
Q 024841 94 GKGLRLKECEHVIICNLEFEGGRGHDVDGIQIK-----PNSRHIWIDRCSLRDYDDGLIDITR--QSTDITVSRCYFTQH 166 (262)
Q Consensus 94 G~gi~i~~a~NVIIrnl~i~~~~~~~~D~I~i~-----~~~~nVwIDHcs~s~~~Dg~id~~~--~s~nvTIS~~~f~~h 166 (262)
|.+++|.. .+..|+|-+|.+.. .+||.+. +...+..|.-+++.....| +.+.. .+....|.||+|.+.
T Consensus 114 g~Gi~Ies-s~~tI~Nntf~~~~---~~GI~v~g~~~~~~i~~~vI~GN~~~~~~~G-i~i~~~~~~~~n~I~NN~I~~N 188 (246)
T PF07602_consen 114 GTGIWIES-SSPTIANNTFTNNG---REGIFVTGTSANPGINGNVISGNSIYFNKTG-ISISDNAAPVENKIENNIIENN 188 (246)
T ss_pred ceEEEEec-CCcEEEeeEEECCc---cccEEEEeeecCCcccceEeecceEEecCcC-eEEEcccCCccceeeccEEEeC
Confidence 44689974 49999999999853 3566553 1234556666676665555 33321 222357899999987
Q ss_pred Cceee
Q 024841 167 DKTML 171 (262)
Q Consensus 167 ~~~~l 171 (262)
..++.
T Consensus 189 ~~Gi~ 193 (246)
T PF07602_consen 189 NIGIV 193 (246)
T ss_pred CcCeE
Confidence 66654
No 83
>smart00710 PbH1 Parallel beta-helix repeats. The tertiary structures of pectate lyases and rhamnogalacturonase A show a stack of parallel beta strands that are coiled into a large helix. Each coil of the helix represents a structural repeat that, in some homologues, can be recognised from sequence information alone. Conservation of asparagines might be connected with asparagine-ladders that contribute to the stability of the fold. Proteins containing these repeats most often are enzymes with polysaccharide substrates.
Probab=32.32 E-value=68 Score=16.79 Aligned_cols=13 Identities=15% Similarity=0.409 Sum_probs=5.8
Q ss_pred eEEEEeeeeecCC
Q 024841 131 HIWIDRCSLRDYD 143 (262)
Q Consensus 131 nVwIDHcs~s~~~ 143 (262)
+++|.+|.|....
T Consensus 3 ~~~i~~n~i~~~~ 15 (26)
T smart00710 3 NVTIENNTIRNNG 15 (26)
T ss_pred CEEEECCEEEeCC
Confidence 3444444444433
No 84
>PRK03174 sspH acid-soluble spore protein H; Provisional
Probab=26.28 E-value=60 Score=22.84 Aligned_cols=19 Identities=21% Similarity=0.240 Sum_probs=13.0
Q ss_pred CcEEEcCCCceEEEEeeee
Q 024841 121 DGIQIKPNSRHIWIDRCSL 139 (262)
Q Consensus 121 D~I~i~~~~~nVwIDHcs~ 139 (262)
+-+.+.-...-|||+||.=
T Consensus 14 ~~i~VtY~G~pV~Ie~vde 32 (59)
T PRK03174 14 DMANVTYNGVPIYIQHVDE 32 (59)
T ss_pred cceEEEECCEEEEEEEEcC
Confidence 3444433578899999973
No 85
>cd06401 PB1_TFG The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domains of TFG represent a type I/II PB1 domain. The physiological function of TFG remains unknown.
Probab=23.37 E-value=79 Score=23.68 Aligned_cols=26 Identities=19% Similarity=0.164 Sum_probs=21.4
Q ss_pred CCCeEEEcCCCCCCChhHHHHhhcCCCeEEE
Q 024841 32 HGPVYFVTNLSDDGPGSLREGCRRREPLWIV 62 (262)
Q Consensus 32 gg~v~~VT~l~dsg~GsLr~al~~~~pr~Iv 62 (262)
-|..++||+-+| |+.|+..+.++.+-
T Consensus 52 dGDlVTIts~~d-----L~~A~~~~~~~~l~ 77 (81)
T cd06401 52 DGDLITIFDSSD-----LSFAIQCSRILKLT 77 (81)
T ss_pred CCCEEEeccHHH-----HHHHHhcCcceEEE
Confidence 468999999988 99999888776543
No 86
>PRK01625 sspH acid-soluble spore protein H; Provisional
Probab=23.07 E-value=75 Score=22.34 Aligned_cols=19 Identities=21% Similarity=0.627 Sum_probs=13.0
Q ss_pred CcEEEcCCCceEEEEeeee
Q 024841 121 DGIQIKPNSRHIWIDRCSL 139 (262)
Q Consensus 121 D~I~i~~~~~nVwIDHcs~ 139 (262)
+-|.+.-...-|||+|++=
T Consensus 14 ~~i~V~Y~G~pV~Iq~vde 32 (59)
T PRK01625 14 SRIDVTYEGVPVWIESCDE 32 (59)
T ss_pred cceEEEECCEEEEEEEEcC
Confidence 3344433578899999973
No 87
>TIGR02861 SASP_H small acid-soluble spore protein, H-type. This model is derived from pfam08141 but has been expanded to include in the seed corresponding proteins from three species of Clostridium. Members of this family should occur only in endospore-forming bacteria, typically with two members per genome, but may be absent from the genomes of some endospore-forming bacteria. SspH (previously designated YfjU) was shown to be expressed specifically in spores of Bacillus subtilis.
Probab=21.91 E-value=81 Score=22.07 Aligned_cols=17 Identities=12% Similarity=0.284 Sum_probs=12.1
Q ss_pred cEEEcCCCceEEEEeee
Q 024841 122 GIQIKPNSRHIWIDRCS 138 (262)
Q Consensus 122 ~I~i~~~~~nVwIDHcs 138 (262)
-+.+.-.+.-|||+||.
T Consensus 15 ~i~V~Y~G~pV~Ie~vd 31 (58)
T TIGR02861 15 MINVTYKGVPVYIEHVD 31 (58)
T ss_pred ceEEEECCEEEEEEEEc
Confidence 34443357889999997
No 88
>PF06355 Aegerolysin: Aegerolysin; InterPro: IPR009413 This family consists of several bacterial and eukaryotic Aegerolysin-like proteins. Aegerolysin and ostreolysin are expressed during formation of primordia and fruiting bodies, and these haemolysins may play an important role in initial phase of fungal fruiting. The bacterial members of this family are expressed during sporulation []. Ostreolysin was found cytolytic to various erythrocytes and tumour cells []. It forms transmembrane pores 4 nm in diameter. Its activity is inhibited by total membrane lipids, and modulated by lysophosphatides.; GO: 0019836 hemolysis by symbiont of host erythrocytes, 0030582 fruiting body development
Probab=20.94 E-value=4.5e+02 Score=21.23 Aligned_cols=57 Identities=28% Similarity=0.356 Sum_probs=37.3
Q ss_pred ccEEEeeeEEecCCC------------CCCCcEEEcCCCceEEEEeeeeec---CCCCeeEeeeCCccE-EEec
Q 024841 103 EHVIICNLEFEGGRG------------HDVDGIQIKPNSRHIWIDRCSLRD---YDDGLIDITRQSTDI-TVSR 160 (262)
Q Consensus 103 ~NVIIrnl~i~~~~~------------~~~D~I~i~~~~~nVwIDHcs~s~---~~Dg~id~~~~s~nv-TIS~ 160 (262)
.++.|||..++.|.- .+.+++.|.+ ....+|--|.=++ +..|.||+..+...| ||.|
T Consensus 15 ~~l~i~Na~L~~GKfy~~~~kd~eis~~~v~~~~i~~-~~~~~i~scGr~~~~sGTEGsfdl~dg~~kI~~lyW 87 (131)
T PF06355_consen 15 GDLKIKNAQLSWGKFYRDGNKDDEISPDDVNGIVIPP-GGSYSICSCGREGSPSGTEGSFDLYDGDTKICTLYW 87 (131)
T ss_pred ccEEEEccEeccCccccCCCcCCEeCccccCceEecC-CCeEEEEEecCCCCCcCceEEEEEEeCCEEEEEEEE
Confidence 467888888887651 2346677753 4566888887654 568888887654445 5554
Done!