Citrus Sinensis ID: 024842

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260--
Protein Sequence
MGCSLSGLNALYDSVNGGGDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKFALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMFGR
Secondary Structure (PSIPRED)
cccccccccccccccccccEEEEccEEEEEEEEEcccccEEEEEEEEEccccccccccccccccccccccccccEEEEEEEEcccHHHHHHHHHHHHHHHccccccccEEEccccHHHHccccccccEEEEEEEEEcccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccccEEEccccccEEEcccccccccEEEEEccccccccccccccccHHHHccccccccccccccccHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHcccccEEEEccEEEEEEEEEcccccEEEEEEEcccccccccccccccccccccccccccccEEEEEEEcccHHHHHHHHHHHHHHHHcccccEEEEEEHHHccccccccccccEEEEEEEcccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccccccccccHcHEEEEccccccccEEEEEccccccccEEEcccHHHHHHHcccccEEEEccHHHHHHHEEHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mgcslsglNALYDsvngggdvwinENRYRILRQLGEGGFAYVYLVKETvttdasaasgglankvkdpshlsddgtYAMKKVLIQNNEQLEMVREEIRVSSLfshrnllplLDHAIIAVKanqegswkheayllfpvhldgtlLDHAKVMQtkkeffstSDVLQIFYQICAGLkhmhsleppyahndvkpgnilitcrkgqpplAILMdfgsarpaqskfalgqrryscRNGLLSIVLHLSELLSCGTVRVIQILMRELMFGR
Flexible Loop (DISEMBL)
MGCSLSGLNALYDSVNGGGDVWINENRYRILRQLGEGGFAYVYLVKETVTTDasaasgglankvkdpshlsDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKFALGQRRYSCRNGLLSIVLHLsellscgtvRVIQILMRELMFGR
Low Complexity Region (SEG)
MGCSLSGLNALYDSVNGGGDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKFALGQRRYSCRNGllsivlhlsellsCGTVRVIQILMRELMFGR
Disordered region (IsUnstruct)
******GLNALYDSVNGGGDVWINENRYRILRQLGEGGFAYVYLVKETVTTD**********************TYAMKKVLIQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKFALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMF**
Disordered Region (DISOPRED)
*************SVNGGGDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQS*FA*****YSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMFGR
Disordered Region (DISEMBL)
MGCSLSGLNALYDSVNGGGDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKFALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMFGR
Disordered Region (DISPRO)
*GCSLSGLNALYDSVNGGGDVWINENRYRILRQLGEGGFAYVYLVKETV*********************SDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKFALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMFGR
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGCSLSGLNALYDSVNGGGDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKFALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMFGR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	262	2.2.26 [Sep-21-2011]
Q54ET3	369	Probable serine/threonine	yes	no	0.553	0.392	0.337	8e-21
O75716	305	Serine/threonine-protein	yes	no	0.622	0.534	0.335	8e-20
P57760	305	Serine/threonine-protein	yes	no	0.622	0.534	0.329	2e-19
O88697	305	Serine/threonine-protein	yes	no	0.622	0.534	0.324	1e-18
Q54VV7	1126	Probable serine/threonine	no	no	0.633	0.147	0.282	4e-15
O14976	1311	Cyclin-G-associated kinas	no	no	0.683	0.136	0.295	1e-12
Q86HW6	798	Probable serine/threonine	no	no	0.645	0.211	0.283	3e-12
Q99KY4	1305	Cyclin-G-associated kinas	no	no	0.629	0.126	0.285	4e-12
P97874	1305	Cyclin-G-associated kinas	no	no	0.629	0.126	0.280	7e-12
O43066	953	Serine/threonine-protein	yes	no	0.641	0.176	0.254	2e-10

>sp|Q54ET3|Y6373_DICDI Probable serine/threonine-protein kinase DDB_G0291350 OS=Dictyostelium discoideum GN=DDB_G0291350 PE=3 SV=1

 Score =  100 bits (250), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 60/178 (33%), Positives = 90/178 (50%), Gaps = 33/178 (18%)

Query: 23  INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVL 82
           IN  +Y + R LGEGGF++VYLVK+                       S+   YA+K ++
Sbjct: 17  INGVKYTVNRILGEGGFSFVYLVKDN----------------------SNSKKYALKVMI 54

Query: 83  IQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTL 142
            Q  E +   + EI     F+H N++ L+DH+I    +N     K E  LL P + DGTL
Sbjct: 55  CQTQESINTAKREINAFQTFNHENIMKLIDHSI----SNHSQDTK-EYRLLLPYYKDGTL 109

Query: 143 ---LDHAKVM---QTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILI 194
              +D+ + +    TKK  F     LQ F ++C  ++  H+  PP AH D+KPGNI++
Sbjct: 110 QDLIDNQRTIYGKDTKKPLFKEKKCLQFFLKVCEAIQVFHNHSPPLAHRDIKPGNIVL 167

Dictyostelium discoideum (taxid: 44689)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|O75716|STK16_HUMAN Serine/threonine-protein kinase 16 OS=Homo sapiens GN=STK16 PE=1 SV=4

 Score = 97.4 bits (241), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 66/197 (33%), Positives = 99/197 (50%), Gaps = 34/197 (17%)

Query: 19  GDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAM 78
           G V I+  RY  +++LGEGGF+YV LV+                       L D   YA+
Sbjct: 11  GTVIIDNKRYLFIQKLGEGGFSYVDLVEG----------------------LHDGHFYAL 48

Query: 79  KKVLIQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHL 138
           K++L    +  E  + E  +  LF+H N+L L+ + +      +E   KHEA+LL P   
Sbjct: 49  KRILCHEQQDREEAQREADMHRLFNHPNILRLVAYCL------RERGAKHEAWLLLPFFK 102

Query: 139 DGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRK 198
            GTL +  + ++ K  F +   +L +   IC GL+ +H+    YAH D+KP NIL+   +
Sbjct: 103 RGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAIHA--KGYAHRDLKPTNILLG-DE 159

Query: 199 GQPPLAILMDFGSARPA 215
           GQP   +LMD GS   A
Sbjct: 160 GQP---VLMDLGSMNQA 173

Membrane-associated protein kinase that phosphorylates on serine and threonine residues. In vitro substrates include DRG1, ENO1 and EIF4EBP1. Also autophosphorylates. May be involved in secretory vesicle trafficking or intracellular signaling. May have a role in regulating stromal-epithelial interactions that occur during ductal morphogenesis in the mammary gland. May be involved in TGF-beta signaling. Able to autophosphorylate on Tyr residue; it is however unclear whether it has tyrosine-protein kinase toward other proteins.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 0

EC: .

EC: 2

>sp|P57760|STK16_RAT Serine/threonine-protein kinase 16 OS=Rattus norvegicus GN=Stk16 PE=2 SV=2

 Score = 96.7 bits (239), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 65/197 (32%), Positives = 99/197 (50%), Gaps = 34/197 (17%)

Query: 19  GDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAM 78
           G V I+  RY  +++LGEGGF+YV LV+                       L D   YA+
Sbjct: 11  GTVIIDNKRYLFVQKLGEGGFSYVDLVEG----------------------LHDGHFYAL 48

Query: 79  KKVLIQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHL 138
           K++L    +  E  + E  +  LF H N+L L+ +++      +E   KHEA+LL P   
Sbjct: 49  KRILCHEQQDQEEAQREADMHRLFQHPNILRLMAYSL------KERGAKHEAWLLLPFFK 102

Query: 139 DGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRK 198
            GTL +  + ++ +  F +   +L +   IC GL+ +H+    YAH D+KP NIL+   +
Sbjct: 103 RGTLWNEIERLKDQGNFLTEDQILPLLLGICRGLEAIHA--KGYAHRDLKPTNILLG-DE 159

Query: 199 GQPPLAILMDFGSARPA 215
           GQP   +LMD GS   A
Sbjct: 160 GQP---VLMDLGSMNQA 173

Membrane-associated protein kinase that phosphorylates on serine and threonine residues. In vitro substrates include DRG1, ENO1 and EIF4EBP1. Also autophosphorylates (By similarity). May be involved in secretory vesicle trafficking or intracellular signaling. May have a role in regulating stromal-epithelial interactions that occur during ductal morphogenesis in the mammary gland. May be involved in TGF-beta signaling. Able to autophosphorylate on Tyr residue; it is however unclear whether it has tyrosine-protein kinase toward other proteins.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 0

EC: .

EC: 2

>sp|O88697|STK16_MOUSE Serine/threonine-protein kinase 16 OS=Mus musculus GN=Stk16 PE=1 SV=3

 Score = 94.0 bits (232), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 64/197 (32%), Positives = 98/197 (49%), Gaps = 34/197 (17%)

Query: 19  GDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAM 78
           G V I+  RY  +++LGEGGF+YV LV+                       L D   YA+
Sbjct: 11  GTVIIDNKRYLFVQKLGEGGFSYVDLVEG----------------------LHDGHFYAL 48

Query: 79  KKVLIQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHL 138
           K++L    +  E  + E  +  LF H N+L L+ +++      +E   KHEA+LL P   
Sbjct: 49  KRILCHEQQDQEEAQREAEMHRLFQHPNILRLMAYSL------KERGAKHEAWLLLPFFK 102

Query: 139 DGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRK 198
            GTL +  + ++ +  F +   +L +   I  GL+ +H+    YAH D+KP NIL+   +
Sbjct: 103 KGTLWNEIERLKDQGSFLTEDQILPLLLGISRGLEAIHA--KGYAHRDLKPTNILLG-DE 159

Query: 199 GQPPLAILMDFGSARPA 215
           GQP   +LMD GS   A
Sbjct: 160 GQP---VLMDLGSMNQA 173

Membrane-associated protein kinase that phosphorylates on serine and threonine residues. In vitro substrates include DRG1, ENO1 and EIF4EBP1. Also autophosphorylates (By similarity). May be involved in secretory vesicle trafficking or intracellular signaling. May have a role in regulating stromal-epithelial interactions that occur during ductal morphogenesis in the mammary gland. May be involved in TGF-beta signaling. Able to autophosphorylate on Tyr residue; it is however unclear whether it has tyrosine-protein kinase toward other proteins.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 0

EC: .

EC: 2

>sp|Q54VV7|Y0111_DICDI Probable serine/threonine-protein kinase DDB_G0280111 OS=Dictyostelium discoideum GN=DDB_G0280111 PE=3 SV=1

 Score = 82.0 bits (201), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 56/198 (28%), Positives = 99/198 (50%), Gaps = 32/198 (16%)

Query: 16  NGGGDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGT 75
           N G  + I       ++Q+ EGGF+YV+LVK++ T+                        
Sbjct: 4   NQGKTLKIGSYHLNFVKQIAEGGFSYVFLVKDSNTSKH---------------------- 41

Query: 76  YAMKKVLIQNNEQLEMVREEIRV-SSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLF 134
           YA+K++LI++ ++L+ V+ EI +   L  H+N++ +LD+  ++ K N E       ++L 
Sbjct: 42  YALKRILIRDEDELKGVKHEISIMKRLTKHKNIVKILDYHKVSDKNNTE------MFILM 95

Query: 135 PVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILI 194
                G L++  +   +    F+  ++L+IF  IC  + +MHS +P   H D+K  N+L+
Sbjct: 96  EYCSGGHLVEIMQKRLSSGSKFTDQEILKIFQDICESVAYMHSQQPLIIHRDLKVENVLL 155

Query: 195 TCRKGQPPLAILMDFGSA 212
               G   +  L DFGSA
Sbjct: 156 DEESG---IYKLCDFGSA 170

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O14976|GAK_HUMAN Cyclin-G-associated kinase OS=Homo sapiens GN=GAK PE=1 SV=2

 Score = 73.9 bits (180), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 95/210 (45%), Gaps = 31/210 (14%)

Query: 4   SLSGLNALYDSVNGGGDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANK 63
           SL G +    S   G  V + E R R+ R L EGGFA+VY  ++         SG     
Sbjct: 16  SLGGASGRDQSDFVGQTVELGELRLRVRRVLAEGGFAFVYEAQDV-------GSGR---- 64

Query: 64  VKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEI-RVSSLFSHRNLLPLLDHAIIAVKANQ 122
                       YA+K++L    E+   + +E+  +  L  H N++     A I  + + 
Sbjct: 65  -----------EYALKRLLSNEEEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKEESD 113

Query: 123 EGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPY 182
            G      +LL      G L++  K M+++    S   VL+IFYQ C  ++HMH  +PP 
Sbjct: 114 TG---QAEFLLLTELCKGQLVEFLKKMESRGPL-SCDTVLKIFYQTCRAVQHMHRQKPPI 169

Query: 183 AHNDVKPGNILITCRKGQPPLAILMDFGSA 212
            H D+K  N+L++ +        L DFGSA
Sbjct: 170 IHRDLKVENLLLSNQG----TIKLCDFGSA 195

Associates with cyclin G and CDK5. Seems to act as an auxilin homolog that is involved in the uncoating of clathrin-coated vesicles by Hsc70 in non-neuronal cells. Expression oscillates slightly during the cell cycle, peaking at G1.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q86HW6|Y6461_DICDI Probable serine/threonine-protein kinase DDB_G0276461 OS=Dictyostelium discoideum GN=DDB_G0276461 PE=3 SV=1

 Score = 72.4 bits (176), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 59/208 (28%), Positives = 97/208 (46%), Gaps = 39/208 (18%)

Query: 11  LYDSVNGG--GDVW-INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDP 67
           ++ ++ GG  G V+ IN  R   ++ + EGGF +VYLV++                    
Sbjct: 34  VWGNITGGRVGQVYDINGRRVTEVKLVAEGGFGFVYLVRDDY------------------ 75

Query: 68  SHLSDDGTYAMKKVLIQNNEQLEMVREEIRV-SSLFSHRNLLPLLDHAIIAVKANQEGSW 126
                +  YA+K++ IQ  E+LE ++ EI V   L ++ N++ L    I   +  +E   
Sbjct: 76  -----NNMYALKRMFIQERERLEAMKNEIDVMQKLRNNPNIVKLEGFKINENRNTRET-- 128

Query: 127 KHEAYLLFPVHLDGTLLDHAKVMQTKKEF--FSTSDVLQIFYQICAGLKHMHSLEPPYAH 184
             E  +L      G++LD   +M  + EF      ++L IF  +C G+  MH  +PP AH
Sbjct: 129 --EVLMLMEYCSGGSVLD---IMNARGEFTRLEEREILAIFSDVCNGVLAMHQQQPPIAH 183

Query: 185 NDVKPGNILITCRKGQPPLAILMDFGSA 212
            D+K  N+L      +  L    DFGS+
Sbjct: 184 RDLKIENVLYCEHSNRYKLC---DFGSS 208

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q99KY4|GAK_MOUSE Cyclin-G-associated kinase OS=Mus musculus GN=Gak PE=1 SV=2

 Score = 72.0 bits (175), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 56/196 (28%), Positives = 88/196 (44%), Gaps = 31/196 (15%)

Query: 18  GGDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYA 77
           G  V + E R R+ R L EGGFA+VY  ++                      L     YA
Sbjct: 30  GQTVELGELRLRVRRVLAEGGFAFVYEAQD----------------------LGSGREYA 67

Query: 78  MKKVLIQNNEQLEMVREEI-RVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPV 136
           +K++L    E+   + +E+  +  L  H N++     A I  + +  G      +LL   
Sbjct: 68  LKRLLSNEEEKNRAIIQEVCFLKKLSGHPNIVQFCSAASIGKEESDTG---QAEFLLLTE 124

Query: 137 HLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITC 196
              G L++  K ++ K    S   +L+IFYQ C  ++HMH  +PP  H D+K  N+L++ 
Sbjct: 125 LCKGQLVEFLKRVECKGPL-SCDSILKIFYQTCRAVQHMHRQKPPIIHRDLKVENLLLSN 183

Query: 197 RKGQPPLAILMDFGSA 212
           +        L DFGSA
Sbjct: 184 QG----TIKLCDFGSA 195

Associates with cyclin G and CDK5. Seems to act as an auxilin homolog that is involved in the uncoating of clathrin-coated vesicles by Hsc70 in non-neuronal cells. Expression oscillates slightly during the cell cycle, peaking at G1.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|P97874|GAK_RAT Cyclin-G-associated kinase OS=Rattus norvegicus GN=Gak PE=2 SV=1

 Score = 71.2 bits (173), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 55/196 (28%), Positives = 88/196 (44%), Gaps = 31/196 (15%)

Query: 18  GGDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYA 77
           G  V + E R R+ R L EGGFA+VY  ++                      L     YA
Sbjct: 30  GQTVELGELRLRVRRVLAEGGFAFVYEAQD----------------------LGSGREYA 67

Query: 78  MKKVLIQNNEQLEMVREEI-RVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPV 136
           +K++L    E+   + +E+  +  L  H N++     A I  + +  G      +LL   
Sbjct: 68  LKRLLSNEEEKNRAIIQEVCFLKKLSGHPNIVQFCSAASIGKEESDTG---QAEFLLLTE 124

Query: 137 HLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITC 196
              G L++  + ++ K    S   +L+IFYQ C  ++HMH  +PP  H D+K  N+L++ 
Sbjct: 125 LCKGQLVEFLRRVECKGPL-SCDSILKIFYQTCRAVQHMHRQKPPIIHRDLKVENLLLSN 183

Query: 197 RKGQPPLAILMDFGSA 212
           +        L DFGSA
Sbjct: 184 QG----TIKLCDFGSA 195

Associates with cyclin G and CDK5. Seems to act as an auxilin homolog that is involved in the uncoating of clathrin-coated vesicles by Hsc70 in non-neuronal cells. Expression oscillates slightly during the cell cycle, peaking at G1.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O43066|PPK30_SCHPO Serine/threonine-protein kinase ppk30 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ppk30 PE=1 SV=1

 Score = 66.6 bits (161), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 93/204 (45%), Gaps = 36/204 (17%)

Query: 11  LYDSVNGGGDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHL 70
           L+  +  G  + +  +   I R L EGGF++VYL                       + L
Sbjct: 40  LFSKIPAGTKIQVGSHSVIIQRYLSEGGFSHVYL-----------------------ALL 76

Query: 71  SDDGTYAMKKVLIQNNEQLEMVREEIR-VSSLFSHRNLLPLLDHAIIAVKANQEGSWKHE 129
            ++  + +K++ + +   L++V  EI  +  L  HR+++  +D + +  K+      ++E
Sbjct: 77  ENEKPFVLKRIYVPDKTALQLVHGEIETMKRLKGHRHIVNYIDSSALYSKSEN----RYE 132

Query: 130 AYLLFPVHLDGTLLDHAKVMQTK-KEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVK 188
            YLL      G L+D    M T+ +   +  ++L+I   +C  +  MH L+PP  H D+K
Sbjct: 133 VYLLMEFCAGGGLID---FMNTRLQHRLTEGEILKILADVCDAVAAMHYLDPPLIHRDLK 189

Query: 189 PGNILITCRKGQPPLAILMDFGSA 212
             N+L+      P    L DFGSA
Sbjct: 190 IENVLLVA----PNSYKLCDFGSA 209

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	262
255541908	347	serine/threonine protein kinase, putativ	0.835	0.631	0.850	1e-107
357477799	342	Serine/threonine protein kinase [Medicag	0.828	0.634	0.827	1e-104
317106659	350	JHL10I11.9 [Jatropha curcas]	0.832	0.622	0.826	1e-103
255637819	230	unknown [Glycine max]	0.832	0.947	0.809	1e-102
356562660	343	PREDICTED: probable serine/threonine-pro	0.839	0.641	0.803	1e-102
356511575	342	PREDICTED: probable serine/threonine-pro	0.828	0.634	0.818	1e-101
15241535	347	serine/threonine protein kinase 3 [Arabi	0.832	0.628	0.803	1e-100
224118834	352	predicted protein [Populus trichocarpa]	0.835	0.622	0.783	1e-100
71727712	345	serine/threonine protein kinase [Gossypi	0.832	0.631	0.784	1e-100
21593866	347	serine/threonine protein kinase [Arabido	0.832	0.628	0.799	1e-100

>gi|255541908|ref|XP_002512018.1| serine/threonine protein kinase, putative [Ricinus communis] gi|223549198|gb|EEF50687.1| serine/threonine protein kinase, putative [Ricinus communis]

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 188/221 (85%), Positives = 204/221 (92%), Gaps = 2/221 (0%)

Query: 1   MGCSLSGLNALYDSVNGGGDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGG- 59
           MGC+ SGLNALYD+VNGGGDVWINENR+RI+RQLGEGGFAYVYLVKE + TD SA +GG 
Sbjct: 1   MGCTFSGLNALYDAVNGGGDVWINENRFRIVRQLGEGGFAYVYLVKEVLVTDTSAIAGGG 60

Query: 60  -LANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAV 118
            LA KVKD SHLSDDGTYAMKKVLIQNNEQLE+VREEIRVSSLFSH NLLPLLDHAII+V
Sbjct: 61  GLAKKVKDTSHLSDDGTYAMKKVLIQNNEQLELVREEIRVSSLFSHPNLLPLLDHAIISV 120

Query: 119 KANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSL 178
           KANQEGSW HEAYLLFPVHLDGTLLD++K M+ KKEFFSTSDVLQIF Q+CAGLKHMHSL
Sbjct: 121 KANQEGSWNHEAYLLFPVHLDGTLLDNSKAMKAKKEFFSTSDVLQIFRQLCAGLKHMHSL 180

Query: 179 EPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF 219
           +PPYAHNDVKPGNIL+T RKGQPPLAILMDFGSARPA+ + 
Sbjct: 181 DPPYAHNDVKPGNILLTRRKGQPPLAILMDFGSARPARKQI 221

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357477799|ref|XP_003609185.1| Serine/threonine protein kinase [Medicago truncatula] gi|355510240|gb|AES91382.1| Serine/threonine protein kinase [Medicago truncatula]

 Score =  383 bits (983), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 182/220 (82%), Positives = 199/220 (90%), Gaps = 3/220 (1%)

Query: 1   MGCSLSGLNALYDSVNGGGDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGL 60
           MGCS SGLNALYDSVNGGGDVWINENR+RILRQLGEGGFAYVYLVKE       +A+GGL
Sbjct: 1   MGCSFSGLNALYDSVNGGGDVWINENRFRILRQLGEGGFAYVYLVKEAPN---DSATGGL 57

Query: 61  ANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKA 120
           ANK+KD SHL+DDG+YAMKKVLIQNNEQLE+VREEIRVSSLFSH NLLPLLDHAII+VK 
Sbjct: 58  ANKLKDSSHLADDGSYAMKKVLIQNNEQLELVREEIRVSSLFSHPNLLPLLDHAIISVKP 117

Query: 121 NQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEP 180
            QE SW HEAYLLFPVHLDGTLLD+AK M+ KKE +STSDVLQIF Q+CAGLKHMH+L+P
Sbjct: 118 TQETSWSHEAYLLFPVHLDGTLLDNAKTMKAKKEHYSTSDVLQIFRQLCAGLKHMHNLDP 177

Query: 181 PYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKFA 220
           PYAHNDVKPGN+LIT RKGQPPLAILMDFGSARPA+ K +
Sbjct: 178 PYAHNDVKPGNVLITHRKGQPPLAILMDFGSARPARKKIS 217

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|317106659|dbj|BAJ53163.1| JHL10I11.9 [Jatropha curcas]

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 186/225 (82%), Positives = 203/225 (90%), Gaps = 7/225 (3%)

Query: 1   MGCSLSGLNALYDSVNGGGDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGG- 59
           MGC+ SGLNALYD+VNGGGDVWINENR+RI+RQLGEGGFAYVYLVKE VT D+SA++GG 
Sbjct: 1   MGCTFSGLNALYDAVNGGGDVWINENRFRIVRQLGEGGFAYVYLVKEVVT-DSSASTGGG 59

Query: 60  -----LANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSHRNLLPLLDHA 114
                LA KVKD SHLSDDGTYAMKKVLIQNNEQLE+VREEIRVSSLFSH NLLPLLDHA
Sbjct: 60  VAGGGLAKKVKDTSHLSDDGTYAMKKVLIQNNEQLELVREEIRVSSLFSHPNLLPLLDHA 119

Query: 115 IIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKH 174
           IIAVK NQEGSW HEAYLLFPVHLDGTLLD++K M+ KKEFFSTSD+LQIF Q+CAGLKH
Sbjct: 120 IIAVKNNQEGSWNHEAYLLFPVHLDGTLLDNSKAMKAKKEFFSTSDILQIFRQLCAGLKH 179

Query: 175 MHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF 219
           MHSL PPYAHNDVKPGN+L+T RKGQ PLAILMDFGSARPA+ + 
Sbjct: 180 MHSLNPPYAHNDVKPGNVLLTHRKGQSPLAILMDFGSARPARKQI 224

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255637819|gb|ACU19230.1| unknown [Glycine max]

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 178/220 (80%), Positives = 198/220 (90%), Gaps = 2/220 (0%)

Query: 1   MGCSLSGLNALYDSVNGGGDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGL 60
           MGCS SGLNALYDSVNGGGDVWINENR+RI+RQLGEGGFAYVYLVKET   + SA + GL
Sbjct: 1   MGCSFSGLNALYDSVNGGGDVWINENRFRIVRQLGEGGFAYVYLVKET--PNDSAVAAGL 58

Query: 61  ANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKA 120
           + K+K  SHLSDDGTYAMKKVLIQNNEQLE+VREEIRVSSLF+H NLLPLL+HAII+VK 
Sbjct: 59  SKKLKGSSHLSDDGTYAMKKVLIQNNEQLELVREEIRVSSLFNHPNLLPLLEHAIISVKP 118

Query: 121 NQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEP 180
            QE SW HEAYLLFPVHLDGTLLD+AK+M+ KKEF+STSDVLQIF Q+CAGLKHMHS +P
Sbjct: 119 TQETSWNHEAYLLFPVHLDGTLLDNAKIMKAKKEFYSTSDVLQIFRQLCAGLKHMHSFDP 178

Query: 181 PYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKFA 220
           P+AHNDVKPGN+LIT RKGQPPLAILMDFGSARPA+ +  
Sbjct: 179 PHAHNDVKPGNVLITHRKGQPPLAILMDFGSARPARKQIG 218

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356562660|ref|XP_003549587.1| PREDICTED: probable serine/threonine-protein kinase DDB_G0291350-like [Glycine max]

 Score =  375 bits (964), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 180/224 (80%), Positives = 201/224 (89%), Gaps = 4/224 (1%)

Query: 1   MGCSLSGLNALYDSVNGGGDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGL 60
           MGCS SGLNALYDSVNGGGDVWINENR+RI+RQLGEGGFAYVYLVKET   + SA + GL
Sbjct: 1   MGCSFSGLNALYDSVNGGGDVWINENRFRIVRQLGEGGFAYVYLVKET--PNDSAVAAGL 58

Query: 61  ANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKA 120
           + K+K  SHLSDDGTYAMKKVLIQNNEQLE+VREEIRVSSLF+H NLLPLL+HAII+VK 
Sbjct: 59  SKKLKGSSHLSDDGTYAMKKVLIQNNEQLELVREEIRVSSLFNHPNLLPLLEHAIISVKP 118

Query: 121 NQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEP 180
            QE SW HEAYLLFPVHLDGTLLD+AK+M+ KKEF+STSDVLQIF Q+CAGLKHMHS +P
Sbjct: 119 TQETSWNHEAYLLFPVHLDGTLLDNAKIMKAKKEFYSTSDVLQIFRQLCAGLKHMHSFDP 178

Query: 181 PYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKFALGQR 224
           P+AHNDVKPGN+LIT RKGQPPLAILMDFGSARPA+ +  +G R
Sbjct: 179 PHAHNDVKPGNVLITHRKGQPPLAILMDFGSARPARKQ--IGSR 220

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356511575|ref|XP_003524500.1| PREDICTED: probable serine/threonine-protein kinase DDB_G0291350-like [Glycine max]

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 180/220 (81%), Positives = 198/220 (90%), Gaps = 3/220 (1%)

Query: 1   MGCSLSGLNALYDSVNGGGDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGL 60
           MGCS SGLNALYDSVNGGGDVWINENR+RI+RQLGEGGFAYVYLVKE    D SAA+G L
Sbjct: 1   MGCSFSGLNALYDSVNGGGDVWINENRFRIVRQLGEGGFAYVYLVKEA--PDDSAAAG-L 57

Query: 61  ANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKA 120
           A K+K  SHLSDDGTYAMKKVLIQNNEQLE+VREEIRVSSLF+H NLLPLL+HAII+VK 
Sbjct: 58  AKKLKGSSHLSDDGTYAMKKVLIQNNEQLELVREEIRVSSLFNHPNLLPLLEHAIISVKP 117

Query: 121 NQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEP 180
             E SW HEAYLLFPVHLDGTLLD+AK+M+ KKEF+STSDVLQIF Q+CAGLKHMHS +P
Sbjct: 118 THETSWNHEAYLLFPVHLDGTLLDNAKIMKAKKEFYSTSDVLQIFRQLCAGLKHMHSFDP 177

Query: 181 PYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKFA 220
           PYAHNDVKPGN+LIT RKGQPPLAILMDFGSARPA+ + +
Sbjct: 178 PYAHNDVKPGNVLITHRKGQPPLAILMDFGSARPARKQIS 217

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15241535|ref|NP_196433.1| serine/threonine protein kinase 3 [Arabidopsis thaliana] gi|11762274|gb|AAG40409.1|AF325057_1 AT5g08160 [Arabidopsis thaliana] gi|2109293|gb|AAB69123.1| serine/threonine protein kinase [Arabidopsis thaliana] gi|8346553|emb|CAB93717.1| serine/threonine protein kinase [Arabidopsis thaliana] gi|24417498|gb|AAN60359.1| unknown [Arabidopsis thaliana] gi|94442405|gb|ABF18990.1| At5g08160 [Arabidopsis thaliana] gi|332003876|gb|AED91259.1| serine/threonine protein kinase 3 [Arabidopsis thaliana]

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 176/219 (80%), Positives = 198/219 (90%), Gaps = 1/219 (0%)

Query: 1   MGCSLSGLNALYDSVNGGGDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGG- 59
           MGCS SGLNALYD+VNGGGDVWINENR+RI+RQLGEGGFA+V+LVKE V   +SAASGG 
Sbjct: 1   MGCSFSGLNALYDAVNGGGDVWINENRFRIVRQLGEGGFAFVFLVKEIVADASSAASGGG 60

Query: 60  LANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVK 119
           LA KVKDP+HLS DGTYAMKKVLIQN EQLE+VREEIRVSSLF+H NLLPLLDHAII+VK
Sbjct: 61  LAKKVKDPAHLSADGTYAMKKVLIQNKEQLELVREEIRVSSLFNHPNLLPLLDHAIISVK 120

Query: 120 ANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLE 179
             QEG+WKHEA+LLFPVHLDGTLLD+  +M+ KKE FST+DVL IF Q+C GLKHMHSLE
Sbjct: 121 DGQEGAWKHEAFLLFPVHLDGTLLDNFTLMKAKKETFSTTDVLHIFRQLCDGLKHMHSLE 180

Query: 180 PPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSK 218
           PPYAHNDVKPGN+L+T RKGQPPLAILMDFGSARP++ +
Sbjct: 181 PPYAHNDVKPGNVLLTRRKGQPPLAILMDFGSARPSRKQ 219

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224118834|ref|XP_002317918.1| predicted protein [Populus trichocarpa] gi|222858591|gb|EEE96138.1| predicted protein [Populus trichocarpa]

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 177/226 (78%), Positives = 199/226 (88%), Gaps = 7/226 (3%)

Query: 1   MGCSLSGLNALYDSVNGGGDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGG- 59
           MGCS SGLNALYD+VNGGGDVWINENR+RI+RQLGEGGFAYVYLVKE V   + A+SGG 
Sbjct: 1   MGCSFSGLNALYDAVNGGGDVWINENRFRIVRQLGEGGFAYVYLVKEVVNVSSPASSGGR 60

Query: 60  ------LANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSHRNLLPLLDH 113
                 L+ KVKD SHLS DGTYAMKKVLIQNNEQLE+VREEIRVSSLF+H NLLPLLDH
Sbjct: 61  AAVGGGLSKKVKDKSHLSVDGTYAMKKVLIQNNEQLELVREEIRVSSLFNHSNLLPLLDH 120

Query: 114 AIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLK 173
           AII+VKA QEGSW HEAYLLFPVHLDGTLLD++  M++KKEFFST+DVLQIF Q+CAGLK
Sbjct: 121 AIISVKATQEGSWNHEAYLLFPVHLDGTLLDNSAAMKSKKEFFSTTDVLQIFRQLCAGLK 180

Query: 174 HMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF 219
           +MH+L+PPYAHNDVKPGN+L+T RKG  PLAILMDFGSARPA+ + 
Sbjct: 181 NMHNLDPPYAHNDVKPGNVLLTHRKGHSPLAILMDFGSARPARKQI 226

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|71727712|gb|AAZ39949.1| serine/threonine protein kinase [Gossypium hirsutum]

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 171/218 (78%), Positives = 194/218 (88%)

Query: 1   MGCSLSGLNALYDSVNGGGDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGL 60
           MGC+ SG NA+YD+ NG GD+WIN+ R++I+RQLGEGGFAYVYLVKE  +  +S ++GGL
Sbjct: 1   MGCTFSGFNAMYDAANGEGDIWINDIRFKIVRQLGEGGFAYVYLVKEVTSDSSSISAGGL 60

Query: 61  ANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKA 120
           A KVKDPSHLSDDGTYAMKKVLIQNNEQLE+VREEIRVSSLFSHRNLLPLLDHAII+VK 
Sbjct: 61  AKKVKDPSHLSDDGTYAMKKVLIQNNEQLELVREEIRVSSLFSHRNLLPLLDHAIISVKP 120

Query: 121 NQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEP 180
            QEGSW HEAYLLFPVHLDGTLLD+ K M  K +FFSTSDV QIF Q+CAGL+HMHSLEP
Sbjct: 121 TQEGSWNHEAYLLFPVHLDGTLLDNFKAMSAKNDFFSTSDVPQIFRQLCAGLEHMHSLEP 180

Query: 181 PYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSK 218
           PYAHNDVKPGN+L+T RKG+ PLAILMDFGSARPA+ +
Sbjct: 181 PYAHNDVKPGNVLLTHRKGESPLAILMDFGSARPARRQ 218

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21593866|gb|AAM65833.1| serine/threonine protein kinase [Arabidopsis thaliana]

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 175/219 (79%), Positives = 198/219 (90%), Gaps = 1/219 (0%)

Query: 1   MGCSLSGLNALYDSVNGGGDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGG- 59
           MGCS SGLNALYD+VNGGGDVWINENR+RI+RQLGEGGFA+V+LVKE V   +SAASGG 
Sbjct: 1   MGCSFSGLNALYDAVNGGGDVWINENRFRIVRQLGEGGFAFVFLVKEIVADASSAASGGG 60

Query: 60  LANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVK 119
           LA KVKDP+HLS DGTYAMKKVLIQN EQLE+VREEIRVSSLF+H NLLPLLDHAII+VK
Sbjct: 61  LAKKVKDPAHLSADGTYAMKKVLIQNKEQLELVREEIRVSSLFNHPNLLPLLDHAIISVK 120

Query: 120 ANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLE 179
             QEG+WKHEA+LLFPVHLDGTLLD+  +M+ KKE FST+DVL IF Q+C GLKHMHSLE
Sbjct: 121 DGQEGAWKHEAFLLFPVHLDGTLLDNFTLMKAKKETFSTTDVLHIFRQLCDGLKHMHSLE 180

Query: 180 PPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSK 218
           PPYAH+DVKPGN+L+T RKGQPPLAILMDFGSARP++ +
Sbjct: 181 PPYAHDDVKPGNVLLTRRKGQPPLAILMDFGSARPSRKQ 219

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	262
TAIR|locus:2181489	347	PK3 "serine/threonine protein	0.832	0.628	0.803	4.3e-93
UNIPROTKB|E2RC53	305	STK16 "Uncharacterized protein	0.511	0.439	0.356	2.1e-23
UNIPROTKB|F1SR81	305	STK16 "Uncharacterized protein	0.511	0.439	0.349	4.3e-23
UNIPROTKB|B8ZZI5	273	STK16 "Serine/threonine-protei	0.511	0.490	0.349	6.9e-23
UNIPROTKB|O75716	305	STK16 "Serine/threonine-protei	0.511	0.439	0.349	6.9e-23
RGD|629474	305	Stk16 "serine/threonine kinase	0.511	0.439	0.342	1.4e-22
UNIPROTKB|E1BYG3	305	STK16 "Uncharacterized protein	0.564	0.485	0.347	1.8e-22
UNIPROTKB|Q2KI50	305	STK16 "Uncharacterized protein	0.511	0.439	0.342	2.3e-22
MGI|MGI:1313271	305	Stk16 "serine/threonine kinase	0.511	0.439	0.335	1.2e-21
DICTYBASE|DDB_G0291350	369	DDB_G0291350 "NAK family prote	0.541	0.384	0.333	6.6e-20

TAIR|locus:2181489 PK3 "serine/threonine protein kinase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 927 (331.4 bits), Expect = 4.3e-93, P = 4.3e-93
 Identities = 176/219 (80%), Positives = 198/219 (90%)

Query:     1 MGCSLSGLNALYDSVNGGGDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGG- 59
             MGCS SGLNALYD+VNGGGDVWINENR+RI+RQLGEGGFA+V+LVKE V   +SAASGG 
Sbjct:     1 MGCSFSGLNALYDAVNGGGDVWINENRFRIVRQLGEGGFAFVFLVKEIVADASSAASGGG 60

Query:    60 LANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVK 119
             LA KVKDP+HLS DGTYAMKKVLIQN EQLE+VREEIRVSSLF+H NLLPLLDHAII+VK
Sbjct:    61 LAKKVKDPAHLSADGTYAMKKVLIQNKEQLELVREEIRVSSLFNHPNLLPLLDHAIISVK 120

Query:   120 ANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLE 179
               QEG+WKHEA+LLFPVHLDGTLLD+  +M+ KKE FST+DVL IF Q+C GLKHMHSLE
Sbjct:   121 DGQEGAWKHEAFLLFPVHLDGTLLDNFTLMKAKKETFSTTDVLHIFRQLCDGLKHMHSLE 180

Query:   180 PPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSK 218
             PPYAHNDVKPGN+L+T RKGQPPLAILMDFGSARP++ +
Sbjct:   181 PPYAHNDVKPGNVLLTRRKGQPPLAILMDFGSARPSRKQ 219

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0045727 "positive regulation of translation" evidence=RCA

UNIPROTKB|E2RC53 STK16 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 207 (77.9 bits), Expect = 2.1e-23, Sum P(2) = 2.1e-23
 Identities = 52/146 (35%), Positives = 78/146 (53%)

Query:    70 LSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHE 129
             L D   YA+K++L    +  E  + E  +  LF H N+L L+ + +      +E   KHE
Sbjct:    40 LHDGHFYALKRILCHEQQDREEAQREADMHRLFHHPNILRLVAYCL------RERGTKHE 93

Query:   130 AYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKP 189
             A+LL P    GTL +  + ++ K  F +   +LQ+   IC GL+ +H+    YAH D+KP
Sbjct:    94 AWLLLPFFKRGTLWNEIERLKDKGNFLTEDQILQLLLGICRGLEAIHARG--YAHRDLKP 151

Query:   190 GNILITCRKGQPPLAILMDFGSARPA 215
              NIL+   +GQP   +LMD GS   A
Sbjct:   152 TNILLG-DEGQP---VLMDLGSMNQA 173

GO:0046777 "protein autophosphorylation" evidence=IEA

GO:0005798 "Golgi-associated vesicle" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|F1SR81 STK16 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 205 (77.2 bits), Expect = 4.3e-23, Sum P(2) = 4.3e-23
 Identities = 51/146 (34%), Positives = 78/146 (53%)

Query:    70 LSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHE 129
             L D   YA+K++L    +  E  + E  +  LF H N+L L+ + +      +E   KHE
Sbjct:    40 LRDGQFYALKRILCHEQQDREEAQREADMHRLFHHPNILRLVAYCL------RERGTKHE 93

Query:   130 AYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKP 189
             A+LL P    GTL +  + ++ K  F +   +L++   IC GL+ +H+    YAH D+KP
Sbjct:    94 AWLLLPFFKRGTLWNEIEKLKDKGNFLTEEQILRLLLGICRGLEAIHA--KGYAHRDLKP 151

Query:   190 GNILITCRKGQPPLAILMDFGSARPA 215
              NIL+   +GQP   +LMD GS   A
Sbjct:   152 TNILLG-DEGQP---VLMDLGSMNQA 173

GO:0046777 "protein autophosphorylation" evidence=IEA

GO:0005798 "Golgi-associated vesicle" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|B8ZZI5 STK16 "Serine/threonine-protein kinase 16" [Homo sapiens (taxid:9606)]

 Score = 203 (76.5 bits), Expect = 6.9e-23, Sum P(2) = 6.9e-23
 Identities = 51/146 (34%), Positives = 79/146 (54%)

Query:    70 LSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHE 129
             L D   YA+K++L    +  E  + E  +  LF+H N+L L+ + +      + G+ KHE
Sbjct:    40 LHDGHFYALKRILCHEQQDREEAQREADMHRLFNHPNILRLVAYCL-----RERGA-KHE 93

Query:   130 AYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKP 189
             A+LL P    GTL +  + ++ K  F +   +L +   IC GL+ +H+    YAH D+KP
Sbjct:    94 AWLLLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAIHA--KGYAHRDLKP 151

Query:   190 GNILITCRKGQPPLAILMDFGSARPA 215
              NIL+   +GQP   +LMD GS   A
Sbjct:   152 TNILLG-DEGQP---VLMDLGSMNQA 173

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|O75716 STK16 "Serine/threonine-protein kinase 16" [Homo sapiens (taxid:9606)]

 Score = 203 (76.5 bits), Expect = 6.9e-23, Sum P(2) = 6.9e-23
 Identities = 51/146 (34%), Positives = 79/146 (54%)

Query:    70 LSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHE 129
             L D   YA+K++L    +  E  + E  +  LF+H N+L L+ + +      + G+ KHE
Sbjct:    40 LHDGHFYALKRILCHEQQDREEAQREADMHRLFNHPNILRLVAYCL-----RERGA-KHE 93

Query:   130 AYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKP 189
             A+LL P    GTL +  + ++ K  F +   +L +   IC GL+ +H+    YAH D+KP
Sbjct:    94 AWLLLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAIHA--KGYAHRDLKP 151

Query:   190 GNILITCRKGQPPLAILMDFGSARPA 215
              NIL+   +GQP   +LMD GS   A
Sbjct:   152 TNILLG-DEGQP---VLMDLGSMNQA 173

GO:0005524 "ATP binding" evidence=IEA

GO:0004715 "non-membrane spanning protein tyrosine kinase activity" evidence=IEA

GO:0001077 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005798 "Golgi-associated vesicle" evidence=IEA

GO:0071560 "cellular response to transforming growth factor beta stimulus" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0046777 "protein autophosphorylation" evidence=IDA

RGD|629474 Stk16 "serine/threonine kinase 16" [Rattus norvegicus (taxid:10116)]

 Score = 201 (75.8 bits), Expect = 1.4e-22, Sum P(2) = 1.4e-22
 Identities = 50/146 (34%), Positives = 79/146 (54%)

Query:    70 LSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHE 129
             L D   YA+K++L    +  E  + E  +  LF H N+L L+ +++      + G+ KHE
Sbjct:    40 LHDGHFYALKRILCHEQQDQEEAQREADMHRLFQHPNILRLMAYSL-----KERGA-KHE 93

Query:   130 AYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKP 189
             A+LL P    GTL +  + ++ +  F +   +L +   IC GL+ +H+    YAH D+KP
Sbjct:    94 AWLLLPFFKRGTLWNEIERLKDQGNFLTEDQILPLLLGICRGLEAIHA--KGYAHRDLKP 151

Query:   190 GNILITCRKGQPPLAILMDFGSARPA 215
              NIL+   +GQP   +LMD GS   A
Sbjct:   152 TNILLG-DEGQP---VLMDLGSMNQA 173

GO:0001077 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription" evidence=IDA

GO:0004672 "protein kinase activity" evidence=IDA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISO

GO:0004715 "non-membrane spanning protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005798 "Golgi-associated vesicle" evidence=IEA;ISO

GO:0006468 "protein phosphorylation" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0046777 "protein autophosphorylation" evidence=ISO;IDA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0071560 "cellular response to transforming growth factor beta stimulus" evidence=IDA

UNIPROTKB|E1BYG3 STK16 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 208 (78.3 bits), Expect = 1.8e-22, Sum P(2) = 1.8e-22
 Identities = 56/161 (34%), Positives = 83/161 (51%)

Query:    56 ASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAI 115
             A GG +  V     L D   YA+K++L  + E  +    E+ + +LF H N+L L  H +
Sbjct:    27 AEGGFSY-VDLVEGLRDGRFYALKRILCHDKEDRQAALREVEMHNLFQHPNILRLEAHCM 85

Query:   116 IAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHM 175
             +     ++G+ KHEA+LL P    GTL    + ++ K  F     +L I   IC+GL+ +
Sbjct:    86 V-----EKGA-KHEAWLLLPYVKGGTLWSEVEALREKGTFMPEQRILLILRGICSGLQAI 139

Query:   176 HSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQ 216
             H     YAH D+KP N+L+     QP   ILMD GS   A+
Sbjct:   140 HG--KGYAHRDLKPTNVLLD-EDDQP---ILMDLGSMNRAR 174

GO:0005524 "ATP binding" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005798 "Golgi-associated vesicle" evidence=IEA

GO:0046777 "protein autophosphorylation" evidence=IEA

UNIPROTKB|Q2KI50 STK16 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 205 (77.2 bits), Expect = 2.3e-22, Sum P(2) = 2.3e-22
 Identities = 50/146 (34%), Positives = 78/146 (53%)

Query:    70 LSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHE 129
             L D   YA+K++L    +  E  + E  +  LF H N+L L+ + +      +E   KHE
Sbjct:    40 LHDGQFYALKRILCHEQQDQEEAQREADMHRLFHHPNILRLVAYCL------RERGTKHE 93

Query:   130 AYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKP 189
             A+LL P    GTL +  + ++ K  F +   ++++   IC GL+ +H+    YAH D+KP
Sbjct:    94 AWLLLPFFKRGTLWNEIEKLKDKGNFLTEEQIIRLLLGICRGLEAIHA--KGYAHRDLKP 151

Query:   190 GNILITCRKGQPPLAILMDFGSARPA 215
              NIL+   +GQP   +LMD GS   A
Sbjct:   152 TNILLG-NEGQP---VLMDLGSMNQA 173

GO:0046777 "protein autophosphorylation" evidence=IEA

GO:0005798 "Golgi-associated vesicle" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

MGI|MGI:1313271 Stk16 "serine/threonine kinase 16" [Mus musculus (taxid:10090)]

 Score = 194 (73.4 bits), Expect = 1.2e-21, Sum P(2) = 1.2e-21
 Identities = 49/146 (33%), Positives = 78/146 (53%)

Query:    70 LSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHE 129
             L D   YA+K++L    +  E  + E  +  LF H N+L L+ +++      + G+ KHE
Sbjct:    40 LHDGHFYALKRILCHEQQDQEEAQREAEMHRLFQHPNILRLMAYSL-----KERGA-KHE 93

Query:   130 AYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKP 189
             A+LL P    GTL +  + ++ +  F +   +L +   I  GL+ +H+    YAH D+KP
Sbjct:    94 AWLLLPFFKKGTLWNEIERLKDQGSFLTEDQILPLLLGISRGLEAIHA--KGYAHRDLKP 151

Query:   190 GNILITCRKGQPPLAILMDFGSARPA 215
              NIL+   +GQP   +LMD GS   A
Sbjct:   152 TNILLG-DEGQP---VLMDLGSMNQA 173

GO:0000166 "nucleotide binding" evidence=IEA

GO:0001077 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription" evidence=ISO

GO:0004672 "protein kinase activity" evidence=ISO

GO:0004674 "protein serine/threonine kinase activity" evidence=IDA

GO:0004715 "non-membrane spanning protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005798 "Golgi-associated vesicle" evidence=IDA

GO:0006468 "protein phosphorylation" evidence=IEA;IDA

GO:0016020 "membrane" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0046777 "protein autophosphorylation" evidence=ISO;IDA

GO:0071560 "cellular response to transforming growth factor beta stimulus" evidence=ISO

DICTYBASE|DDB_G0291350 DDB_G0291350 "NAK family protein kinase DDB_G0291350" [Dictyostelium discoideum (taxid:44689)]

 Score = 210 (79.0 bits), Expect = 6.6e-20, Sum P(2) = 6.6e-20
 Identities = 52/156 (33%), Positives = 77/156 (49%)

Query:    45 VKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSH 104
             VK TV              VKD S+      YA+K ++ Q  E +   + EI     F+H
Sbjct:    20 VKYTVNRILGEGGFSFVYLVKDNSNSKK---YALKVMICQTQESINTAKREINAFQTFNH 76

Query:   105 RNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTL---LDHAKVM---QTKKEFFST 158
              N++ L+DH+I    +N     K E  LL P + DGTL   +D+ + +    TKK  F  
Sbjct:    77 ENIMKLIDHSI----SNHSQDTK-EYRLLLPYYKDGTLQDLIDNQRTIYGKDTKKPLFKE 131

Query:   159 SDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILI 194
                LQ F ++C  ++  H+  PP AH D+KPGNI++
Sbjct:   132 KKCLQFFLKVCEAIQVFHNHSPPLAHRDIKPGNIVL 167

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0016740 "transferase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.7.11.1	LOW CONFIDENCE prediction!
3rd Layer	2.7.11	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	ATPK3	ATPK3; ATP binding / kinase/ protein kinase/ protein serine/threonine kinase; Encodes a serine/threonine protein kinase. (347 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	HAG1	GCN5; DNA binding / H3 histone acetyltransferase/ histone acetyltransferase; Encodes a histone [...] (568 aa)							•		0.827
	SOS3	SOS3 (SALT OVERLY SENSITIVE 3); calcium ion binding / calcium-dependent protein serine/threonin [...] (222 aa)							•		0.657
	CAM3	CAM3 (CALMODULIN 3); calcium ion binding; encodes a calmodulin ; Calmodulin mediates the contro [...] (149 aa)				•			•		0.617
	CAM5	CAM5 (CALMODULIN 5); calcium ion binding; encodes a calmodulin that has higher affinity to kine [...] (181 aa)							•		0.599
	AT5G10840	endomembrane protein 70, putative; endomembrane protein 70, putative; LOCATED IN- integral to m [...] (648 aa)				•					0.587
	RGP1	RGP1 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 1); cellulose synthase (UDP-forming); reversibly glyc [...] (357 aa)				•					0.577
	AT5G16510	reversibly glycosylated polypeptide, putative; reversibly glycosylated polypeptide, putative; F [...] (348 aa)				•					0.567
	AT1G14670	endomembrane protein 70, putative; endomembrane protein 70, putative; INVOLVED IN- transport; L [...] (592 aa)				•					0.536
	AT2G21160	translocon-associated protein alpha (TRAP alpha) family protein; translocon-associated protein [...] (258 aa)				•					0.524
	AT1G30630	coatomer protein epsilon subunit family protein / COPE family protein; coatomer protein epsilon [...] (292 aa)				•					0.521

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	262
cd00180	215	cd00180, PKc, Catalytic domain of Protein Kinases	3e-22
smart00220	254	smart00220, S_TKc, Serine/Threonine protein kinase	2e-19
cd08215	258	cd08215, STKc_Nek, Catalytic domain of the Protein	3e-19
pfam00069	260	pfam00069, Pkinase, Protein kinase domain	3e-19
COG0515	384	COG0515, SPS1, Serine/threonine protein kinase [Ge	2e-16
cd07866	311	cd07866, STKc_BUR1, Catalytic domain of the Serine	1e-12
cd07840	287	cd07840, STKc_CDK9_like, Catalytic domain of Cycli	3e-12
cd05118	283	cd05118, STKc_CMGC, Catalytic domain of CMGC famil	5e-12
cd08219	255	cd08219, STKc_Nek3, Catalytic domain of the Protei	7e-12
cd07831	282	cd07831, STKc_MOK, Catalytic domain of the Serine/	2e-11
cd07830	283	cd07830, STKc_MAK_like, Catalytic domain of Male g	2e-11
cd08530	256	cd08530, STKc_CNK2-like, Catalytic domain of the P	3e-11
cd07834	330	cd07834, STKc_MAPK, Catalytic domain of the Serine	4e-11
cd07829	282	cd07829, STKc_CDK_like, Catalytic domain of Cyclin	6e-11
cd07838	287	cd07838, STKc_CDK4_6_like, Catalytic domain of Cyc	1e-10
cd07865	310	cd07865, STKc_CDK9, Catalytic domain of the Serine	2e-10
cd07851	343	cd07851, STKc_p38, Catalytic domain of the Serine/	5e-10
cd07841	298	cd07841, STKc_CDK7, Catalytic domain of the Serine	6e-10
cd07832	286	cd07832, STKc_CCRK, Catalytic domain of the Serine	2e-09
cd05122	253	cd05122, PKc_STE, Catalytic domain of STE family P	2e-09
cd06606	260	cd06606, STKc_MAPKKK, Catalytic domain of the Prot	6e-09
cd08528	269	cd08528, STKc_Nek10, Catalytic domain of the Prote	7e-09
smart00219	257	smart00219, TyrKc, Tyrosine kinase, catalytic doma	3e-08
cd07835	283	cd07835, STKc_CDK1_like, Catalytic domain of Cycli	6e-08
smart00221	258	smart00221, STYKc, Protein kinase; unclassified sp	8e-08
cd07880	343	cd07880, STKc_p38gamma_MAPK12, Catalytic domain of	9e-08
cd07833	288	cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dep	9e-08
cd07864	302	cd07864, STKc_CDK12, Catalytic domain of the Serin	1e-07
cd05123	250	cd05123, STKc_AGC, Catalytic domain of AGC family	1e-07
cd05581	280	cd05581, STKc_PDK1, Catalytic domain of the Protei	2e-07
cd06611	280	cd06611, STKc_SLK_like, Catalytic domain of Ste20-	2e-07
cd08224	267	cd08224, STKc_Nek6_Nek7, Catalytic domain of the P	3e-07
cd07843	293	cd07843, STKc_CDC2L1, Catalytic domain of the Seri	4e-07
cd08218	256	cd08218, STKc_Nek1, Catalytic domain of the Protei	4e-07
cd06607	307	cd06607, STKc_TAO, Catalytic domain of the Protein	4e-07
cd07853	372	cd07853, STKc_NLK, Catalytic domain of the Serine/	6e-07
PLN00009	294	PLN00009, PLN00009, cyclin-dependent kinase A; Pro	6e-07
cd07863	288	cd07863, STKc_CDK4, Catalytic domain of the Serine	1e-06
cd05601	330	cd05601, STKc_CRIK, Catalytic domain of the Protei	2e-06
pfam07714	258	pfam07714, Pkinase_Tyr, Protein tyrosine kinase	2e-06
cd05580	290	cd05580, STKc_PKA, Catalytic domain of the Protein	4e-06
cd05573	350	cd05573, STKc_ROCK_NDR_like, Catalytic domain of R	4e-06
cd07862	290	cd07862, STKc_CDK6, Catalytic domain of the Serine	5e-06
cd07855	334	cd07855, STKc_ERK5, Catalytic domain of the Serine	8e-06
cd07879	342	cd07879, STKc_p38delta_MAPK13, Catalytic domain of	2e-05
cd00192	262	cd00192, PTKc, Catalytic domain of Protein Tyrosin	2e-05
cd07874	355	cd07874, STKc_JNK3, Catalytic domain of the Serine	2e-05
cd06612	256	cd06612, STKc_MST1_2, Catalytic domain of the Prot	2e-05
cd06638	286	cd06638, STKc_myosinIIIA, Catalytic domain of the	4e-05
cd07856	328	cd07856, STKc_Sty1_Hog1, Catalytic domain of the S	4e-05
cd08228	267	cd08228, STKc_Nek6, Catalytic domain of the Protei	4e-05
cd07849	336	cd07849, STKc_ERK1_2_like, Catalytic domain of Ext	5e-05
cd06634	308	cd06634, STKc_TAO2, Catalytic domain of the Protei	9e-05
cd06635	317	cd06635, STKc_TAO1, Catalytic domain of the Protei	1e-04
cd05572	262	cd05572, STKc_cGK_PKG, Catalytic domain of the Pro	1e-04
cd07875	364	cd07875, STKc_JNK1, Catalytic domain of the Serine	1e-04
cd08223	257	cd08223, STKc_Nek4, Catalytic domain of the Protei	1e-04
cd05051	296	cd05051, PTKc_DDR, Catalytic domain of the Protein	1e-04
cd08221	256	cd08221, STKc_Nek9, Catalytic domain of the Protei	1e-04
cd07876	359	cd07876, STKc_JNK2, Catalytic domain of the Serine	1e-04
cd07857	332	cd07857, STKc_MPK1, Catalytic domain of the Serine	1e-04
cd08220	256	cd08220, STKc_Nek8, Catalytic domain of the Protei	2e-04
cd05582	318	cd05582, STKc_RSK_N, N-terminal catalytic domain o	2e-04
cd07850	353	cd07850, STKc_JNK, Catalytic domain of the Serine/	2e-04
cd08225	257	cd08225, STKc_Nek5, Catalytic domain of the Protei	2e-04
cd08217	265	cd08217, STKc_Nek2, Catalytic domain of the Protei	3e-04
cd06627	254	cd06627, STKc_Cdc7_like, Catalytic domain of Cell	3e-04
cd08229	267	cd08229, STKc_Nek7, Catalytic domain of the Protei	4e-04
cd07845	309	cd07845, STKc_CDK10, Catalytic domain of the Serin	4e-04
cd06624	268	cd06624, STKc_ASK, Catalytic domain of the Protein	4e-04
cd08529	256	cd08529, STKc_FA2-like, Catalytic domain of the Pr	4e-04
cd06610	267	cd06610, STKc_OSR1_SPAK, Catalytic domain of the P	4e-04
cd07858	337	cd07858, STKc_TEY_MAPK_plant, Catalytic domain of	5e-04
cd07846	286	cd07846, STKc_CDKL2_3, Catalytic domain of the Ser	5e-04
cd06623	264	cd06623, PKc_MAPKK_plant_like, Catalytic domain of	5e-04
cd07837	295	cd07837, STKc_CdkB_plant, Catalytic domain of the	8e-04
cd05579	265	cd05579, STKc_MAST_like, Catalytic domain of Micro	8e-04
cd06632	258	cd06632, STKc_MEKK1_plant, Catalytic domain of the	8e-04
cd07852	337	cd07852, STKc_MAPK15, Catalytic domain of the Seri	0.001
cd05612	291	cd05612, STKc_PRKX_like, Catalytic domain of PRKX-	0.001
cd06626	264	cd06626, STKc_MEKK4, Catalytic domain of the Prote	0.001
cd07877	345	cd07877, STKc_p38alpha_MAPK14, Catalytic domain of	0.001
cd05584	323	cd05584, STKc_p70S6K, Catalytic domain of the Prot	0.002
cd05120	155	cd05120, APH_ChoK_like, Aminoglycoside 3'-phosphot	0.002
cd06633	313	cd06633, STKc_TAO3, Catalytic domain of the Protei	0.002
cd07847	286	cd07847, STKc_CDKL1_4, Catalytic domain of the Ser	0.002
cd06630	268	cd06630, STKc_MEKK1, Catalytic domain of the Prote	0.002
cd07839	284	cd07839, STKc_CDK5, Catalytic domain of the Serine	0.003
cd06605	265	cd06605, PKc_MAPKK, Catalytic domain of the dual-s	0.003
cd07878	343	cd07878, STKc_p38beta_MAPK11, Catalytic domain of	0.004

>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases

 Score = 91.1 bits (227), Expect = 3e-22
 Identities = 45/186 (24%), Positives = 75/186 (40%), Gaps = 41/186 (22%)

Query: 34  LGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN-NEQLEMV 92
           LGEGGF  VYL +                              A+K +  ++ +  LE +
Sbjct: 1   LGEGGFGTVYLAR----------------------DKKTGKKVAIKIIKKEDSSSLLEEL 38

Query: 93  REEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTK 152
             EI +    +H N++ L                ++  YL+      G+L D   +++  
Sbjct: 39  LREIEILKKLNHPNIVKLYGV----------FEDENHLYLVMEYCEGGSLKD---LLKEN 85

Query: 153 KEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSA 212
           +   S  ++L+I  QI  GL+++HS      H D+KP NIL+    G+     L DFG +
Sbjct: 86  EGKLSEDEILRILLQILEGLEYLHSN--GIIHRDLKPENILLDSDNGK---VKLADFGLS 140

Query: 213 RPAQSK 218
           +   S 
Sbjct: 141 KLLTSD 146

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. Length = 215

>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain

 Score = 84.1 bits (209), Expect = 2e-19
 Identities = 47/188 (25%), Positives = 73/188 (38%), Gaps = 45/188 (23%)

Query: 28  YRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKV-LIQNN 86
           Y IL +LGEG F  VYL +                              A+K +   +  
Sbjct: 1   YEILEKLGEGSFGKVYLAR----------------------DKKTGKLVAIKVIKKKKIK 38

Query: 87  EQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLD-GTLLDH 145
           +  E +  EI++     H N++ L D         ++   + + YL+   + + G L D 
Sbjct: 39  KDRERILREIKILKKLKHPNIVRLYD-------VFED---EDKLYLVME-YCEGGDLFDL 87

Query: 146 AKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAI 205
            K    K+   S  +      QI + L+++HS      H D+KP NIL+    G      
Sbjct: 88  LK----KRGRLSEDEARFYLRQILSALEYLHSKG--IVHRDLKPENILLD-EDGH---VK 137

Query: 206 LMDFGSAR 213
           L DFG AR
Sbjct: 138 LADFGLAR 145

Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254

>gnl|CDD|173755 cd08215, STKc_Nek, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

 Score = 83.7 bits (208), Expect = 3e-19
 Identities = 51/205 (24%), Positives = 83/205 (40%), Gaps = 52/205 (25%)

Query: 27  RYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLI--Q 84
           +Y I++Q+G+G F  VYLV+                        SD   Y +K++ +   
Sbjct: 1   KYEIIKQIGKGSFGKVYLVR----------------------RKSDGKLYVLKEIDLSNM 38

Query: 85  NNEQLEMVREEIRVSSLFSHRNLLPLLDH-AIIAVKANQEGSWKHEAYLLFPVHL--DGT 141
           + ++ E    E+          +L  L+H  II        S++ +  L   +     G 
Sbjct: 39  SEKEREDALNEV---------KILKKLNHPNIIKYYE----SFEEKGKLCIVMEYADGGD 85

Query: 142 LLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHS---LEPPYAHNDVKPGNILITCRK 198
           L    K  + + + F    +L  F Q+C  LK++HS   L     H D+KP NI +T   
Sbjct: 86  LSQKIKKQKKEGKPFPEEQILDWFVQLCLALKYLHSRKIL-----HRDIKPQNIFLT-SN 139

Query: 199 GQPPLAILMDFGSARPAQSKFALGQ 223
           G   L  L DFG ++   S   L +
Sbjct: 140 G---LVKLGDFGISKVLSSTVDLAK 161

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Length = 258

>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain

 Score = 83.8 bits (208), Expect = 3e-19
 Identities = 48/188 (25%), Positives = 75/188 (39%), Gaps = 44/188 (23%)

Query: 28  YRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNN- 86
           Y +LR+LG G F  VY  K                      H       A+K +  ++  
Sbjct: 1   YELLRKLGSGSFGTVYKAK----------------------HKGTGKIVAVKILKKRSEK 38

Query: 87  -EQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDH 145
            ++ +  R EIR+    SH N++ L+D       A ++       YL+   + +G  L  
Sbjct: 39  SKKDQTARREIRILRRLSHPNIVRLID-------AFEDKD---HLYLVME-YCEGGDLFD 87

Query: 146 AKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAI 205
                      S  +  +I  QI  GL+++HS      H D+KP NIL+    G   +A 
Sbjct: 88  YLSRGGP---LSEDEAKKIALQILRGLEYLHSN--GIIHRDLKPENILL-DENGVVKIA- 140

Query: 206 LMDFGSAR 213
             DFG A+
Sbjct: 141 --DFGLAK 146

Length = 260

>gnl|CDD|223589 COG0515, SPS1, Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

 Score = 77.5 bits (189), Expect = 2e-16
 Identities = 54/192 (28%), Positives = 79/192 (41%), Gaps = 39/192 (20%)

Query: 28  YRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNE 87
           YRILR+LGEG F  VYL ++             A KV             + K L   ++
Sbjct: 2   YRILRKLGEGSFGEVYLARDRKLV---------ALKV-------------LAKKLESKSK 39

Query: 88  QLEMVREEIRV-SSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHA 146
           ++E    EI++ +SL    N++ L D              +   YL+      G+L D  
Sbjct: 40  EVERFLREIQILASLNHPPNIVKLYDF----------FQDEGSLYLVMEYVDGGSLEDLL 89

Query: 147 KVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAIL 206
           K +  K    S S+ L I  QI + L+++HS      H D+KP NIL+        L   
Sbjct: 90  KKIGRKG-PLSESEALFILAQILSALEYLHSK--GIIHRDIKPENILLDRDGRVVKLI-- 144

Query: 207 MDFGSARPAQSK 218
            DFG A+     
Sbjct: 145 -DFGLAKLLPDP 155

Length = 384

>gnl|CDD|143371 cd07866, STKc_BUR1, Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

 Score = 65.8 bits (161), Expect = 1e-12
 Identities = 51/194 (26%), Positives = 82/194 (42%), Gaps = 42/194 (21%)

Query: 26  NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN 85
             Y IL +LGEG F  VY  +                       +      A+KK+L+ N
Sbjct: 8   RDYEILGKLGEGTFGEVYKAR----------------------QIKTGRVVALKKILMHN 45

Query: 86  NEQLEMVR--EEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFP--VH-LDG 140
            +    +    EI++     H N++PL+D A+   + ++    +   Y++ P   H L G
Sbjct: 46  EKDGFPITALREIKILKKLKHPNVVPLIDMAV--ERPDKSKRKRGSVYMVTPYMDHDLSG 103

Query: 141 TLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQ 200
            LL++  V        + S +     Q+  G+ ++H  E    H D+K  NILI   +G 
Sbjct: 104 -LLENPSVK------LTESQIKCYMLQLLEGINYLH--ENHILHRDIKAANILID-NQGI 153

Query: 201 PPLAILMDFGSARP 214
             +A   DFG ARP
Sbjct: 154 LKIA---DFGLARP 164

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic screen as factors involved in general transcription. The BUR1/BUR2 complex phosphorylates the C-terminal domain of RNA polymerase II. In addition, this complex regulates histone modification by phosporylating Rad6 and mediating the association of the Paf1 complex with chromatin. Length = 311

>gnl|CDD|143345 cd07840, STKc_CDK9_like, Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

 Score = 64.9 bits (159), Expect = 3e-12
 Identities = 53/193 (27%), Positives = 83/193 (43%), Gaps = 50/193 (25%)

Query: 28  YRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNE 87
           Y  + Q+GEG +  VY  +   T +                        A+KK+ ++N +
Sbjct: 1   YEKIAQIGEGTYGQVYKARNKKTGE----------------------LVALKKIRMENEK 38

Query: 88  Q---LEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPV--H-LDGT 141
           +   +  +R EI++     H N++ L +     V +  +GS     Y++F    H L G 
Sbjct: 39  EGFPITAIR-EIKLLQKLRHPNIVRLKE----IVTSKGKGS----IYMVFEYMDHDLTG- 88

Query: 142 LLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQP 201
           LLD  +V       F+ S +     Q+  GL+++HS      H D+K  NILI    G  
Sbjct: 89  LLDSPEVK------FTESQIKCYMKQLLEGLQYLHSNG--ILHRDIKGSNILINND-GVL 139

Query: 202 PLAILMDFGSARP 214
            LA   DFG ARP
Sbjct: 140 KLA---DFGLARP 149

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA polymerase II and participate in regulating mutliple steps of gene expression including transcription elongation and RNA processing. CDK9 and CdkC associate with T-type cyclins while BUR1 associates with the cyclin BUR2. CDK12 is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 interacts with cyclins L1 and L2, and participates in regulating transcription and alternative splicing. Length = 287

>gnl|CDD|143333 cd05118, STKc_CMGC, Catalytic domain of CMGC family Serine/Threonine Kinases

 Score = 64.3 bits (157), Expect = 5e-12
 Identities = 43/196 (21%), Positives = 72/196 (36%), Gaps = 48/196 (24%)

Query: 28  YRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNE 87
           Y+ L ++GEG +  VY  +                              A+KK+ ++   
Sbjct: 1   YQKLGKIGEGTYGVVYKAR----------------------DKLTGEIVAIKKIKLRFES 38

Query: 88  QLEMVR--EEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDH 145
           +        EI++    +H N++ LLD      +   +       YL+F        +D 
Sbjct: 39  EGIPKTALREIKLLKELNHPNIIKLLD----VFRHKGD------LYLVF------EFMDT 82

Query: 146 --AKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPL 203
              K+++ ++     S +    YQ+  GL   HS      H D+KP N+LI        +
Sbjct: 83  DLYKLIKDRQRGLPESLIKSYLYQLLQGLAFCHSHG--ILHRDLKPENLLIN----TEGV 136

Query: 204 AILMDFGSARPAQSKF 219
             L DFG AR   S  
Sbjct: 137 LKLADFGLARSFGSPV 152

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Length = 283

>gnl|CDD|173759 cd08219, STKc_Nek3, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

 Score = 63.5 bits (154), Expect = 7e-12
 Identities = 53/188 (28%), Positives = 83/188 (44%), Gaps = 41/188 (21%)

Query: 27  RYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKV-LIQN 85
           +Y +LR +GEG F    LV+                      H++ D  YAMK++ L ++
Sbjct: 1   QYNVLRVVGEGSFGRALLVQ----------------------HVNSDQKYAMKEIRLPKS 38

Query: 86  NEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDH 145
           +  +E  R+E  + +   H N        I+A K + E       Y++      G L+  
Sbjct: 39  SSAVEDSRKEAVLLAKMKHPN--------IVAFKESFEA--DGHLYIVMEYCDGGDLMQ- 87

Query: 146 AKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAI 205
            K+   + + F    +LQ F Q+C G++H+H  E    H D+K  NI +T    Q     
Sbjct: 88  -KIKLQRGKLFPEDTILQWFVQMCLGVQHIH--EKRVLHRDIKSKNIFLT----QNGKVK 140

Query: 206 LMDFGSAR 213
           L DFGSAR
Sbjct: 141 LGDFGSAR 148

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activation of Vav2 and contributes to prolactin-mediated motility of breast cancer cells. Length = 255

>gnl|CDD|173735 cd07831, STKc_MOK, Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

 Score = 62.3 bits (152), Expect = 2e-11
 Identities = 50/195 (25%), Positives = 73/195 (37%), Gaps = 47/195 (24%)

Query: 28  YRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNE 87
           Y+IL ++GEG F+ V   +                             YA+K  + ++ +
Sbjct: 1   YKILGKIGEGTFSEVLKAQ----------------------SRKTGKYYAIKC-MKKHFK 37

Query: 88  QLEMV---REEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHL-DGTLL 143
            LE V   RE   +  L  H N+L L++     +   + G       L     L D  L 
Sbjct: 38  SLEQVNNLREIQALRRLSPHPNILRLIEV----LFDRKTGR------LALVFELMDMNLY 87

Query: 144 DHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPL 203
           +    ++ +K       V    YQ+   L HMH       H D+KP NILI     +   
Sbjct: 88  EL---IKGRKRPLPEKRVKSYMYQLLKSLDHMHR--NGIFHRDIKPENILIKDDILK--- 139

Query: 204 AILMDFGSARPAQSK 218
             L DFGS R   SK
Sbjct: 140 --LADFGSCRGIYSK 152

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation. Length = 282

>gnl|CDD|173734 cd07830, STKc_MAK_like, Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

 Score = 62.2 bits (152), Expect = 2e-11
 Identities = 52/191 (27%), Positives = 83/191 (43%), Gaps = 39/191 (20%)

Query: 28  YRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNE 87
           Y++++QLG+G F  VYL +   T +  A        +K            MKK      E
Sbjct: 1   YKVIKQLGDGTFGSVYLARNKETGELVA--------IK-----------KMKKKFYSWEE 41

Query: 88  QLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAK 147
            + + RE   +  L  H N++ L +                E Y +F  +++G L     
Sbjct: 42  CMNL-REVKSLRKLNEHPNIVKLKE-VFRE---------NDELYFVFE-YMEGNLYQ--L 87

Query: 148 VMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILM 207
           +   K + FS S +  I YQI  GL H+H     + H D+KP N+L++     P +  + 
Sbjct: 88  MKDRKGKPFSESVIRSIIYQILQGLAHIHKHG--FFHRDLKPENLLVS----GPEVVKIA 141

Query: 208 DFGSARPAQSK 218
           DFG AR  +S+
Sbjct: 142 DFGLAREIRSR 152

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertility. It functions as a coactivator of the androgen receptor in prostate cells. MRK, also called Intestinal Cell Kinase (ICK), is expressed ubiquitously, with highest expression in the ovary and uterus. A missense mutation in MRK causes endocrine-cerebro-osteodysplasia (ECO), suggesting that this protein plays an important role in the development of many organs. MAK and MRK may be involved in regulating cell cycle and cell fate. Ime2p is a meiosis-specific kinase that is important during meiotic initiation and during the later stages of meiosis. Mde3 functions downstream of the transcription factor Mei-4 which is essential for meiotic prophase I. Length = 283

>gnl|CDD|173772 cd08530, STKc_CNK2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

 Score = 61.7 bits (150), Expect = 3e-11
 Identities = 47/204 (23%), Positives = 80/204 (39%), Gaps = 50/204 (24%)

Query: 27  RYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNN 86
            +++L++LG+G +  VY VK                       LSD+  YA+K+V + + 
Sbjct: 1   DFKVLKKLGKGSYGSVYKVKR----------------------LSDNQFYALKEVDLGSM 38

Query: 87  EQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYL----LFPVH---LD 139
            Q E      R  ++   R L  +    II+           EA+L    L  V      
Sbjct: 39  SQKE------REDAVNEIRILASVNHPNIISY---------KEAFLDGNKLCIVMEYAPF 83

Query: 140 GTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKG 199
           G L       + K++     ++ +IF Q+  GL+ +H  +    H D+K  NIL+     
Sbjct: 84  GDLSKAISKRKKKRKLIPEQEIWRIFIQLLRGLQALHEQK--ILHRDLKSANILLV---- 137

Query: 200 QPPLAILMDFGSARPAQSKFALGQ 223
              L  + D G ++  +   A  Q
Sbjct: 138 ANDLVKIGDLGISKVLKKNMAKTQ 161

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, and it regulates cell size, through influencing the size threshold at which cells commit to mitosis. Length = 256

>gnl|CDD|173737 cd07834, STKc_MAPK, Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

 Score = 61.8 bits (151), Expect = 4e-11
 Identities = 56/195 (28%), Positives = 89/195 (45%), Gaps = 52/195 (26%)

Query: 27  RYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNN 86
           RY +L+ +G G +  V    +  T    A        +K  S++ DD   A K++L    
Sbjct: 1   RYELLKPIGSGAYGVVCSAVDKRTGRKVA--------IKKISNVFDDLIDA-KRIL---- 47

Query: 87  EQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDH- 145
                 RE I++     H N++ LLD  I+   + ++    ++ Y++        L++  
Sbjct: 48  ------RE-IKLLRHLRHENIIGLLD--ILRPPSPED---FNDVYIVTE------LMETD 89

Query: 146 -AKVMQTKKEFFSTSDVLQIF-YQICAGLKHMHSLEPPYA---HNDVKPGNILI--TCRK 198
             KV+++ +    T D +Q F YQI  GLK++HS     A   H D+KP NIL+   C  
Sbjct: 90  LHKVIKSPQPL--TDDHIQYFLYQILRGLKYLHS-----ANVIHRDLKPSNILVNSNCD- 141

Query: 199 GQPPLAILMDFGSAR 213
               L I  DFG AR
Sbjct: 142 ----LKIC-DFGLAR 151

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPK kinase (MAP2K or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAP3K or MKKK). Each cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. There are three main typical MAPK subfamilies: Extracellular signal-Regulated Kinase (ERK), c-Jun N-terminal Kinase (JNK), and p38. Some MAPKs are atypical in that they are not regulated by MAP2Ks. These include MAPK4, MAPK6, NLK, and ERK7. Length = 330

>gnl|CDD|173733 cd07829, STKc_CDK_like, Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

 Score = 61.0 bits (149), Expect = 6e-11
 Identities = 54/194 (27%), Positives = 77/194 (39%), Gaps = 56/194 (28%)

Query: 28  YRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNE 87
           Y  L +LGEG +  VY  ++  T                          A+KK+ + N E
Sbjct: 1   YEKLEKLGEGTYGVVYKARDKKT----------------------GEIVALKKIRLDNEE 38

Query: 88  QLEMVREEIRVSSL--------FSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLD 139
                 E I  ++L          H N++ LLD  +I  +           YL+F  + D
Sbjct: 39  ------EGIPSTALREISLLKELKHPNIVKLLD--VIHTERKL--------YLVFE-YCD 81

Query: 140 GTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKG 199
              +D  K +  +    S + +  I YQ+  GL + HS      H D+KP NILI  R G
Sbjct: 82  ---MDLKKYLDKRPGPLSPNLIKSIMYQLLRGLAYCHSHR--ILHRDLKPQNILIN-RDG 135

Query: 200 QPPLAILMDFGSAR 213
              LA   DFG AR
Sbjct: 136 VLKLA---DFGLAR 146

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the early G1 phase by CDK4 or CDK6, the G1/S phase transition by CDK2, or the entry of mitosis by CDK1. They also exhibit overlapping cyclin specificity and functions in certain conditions. Knockout mice with a single CDK deleted remain viable with specific phenotypes, showing that some CDKs can compensate for each other. For example, CDK4 can compensate for the loss of CDK6, however, double knockout mice with both CDK4 and CDK6 deleted die in utero. CDK8 and CDK9 are mainly involved in transcription while CDK5 is implicated in neuronal function. CDK7 plays essential roles in both the cell cycle as a CDK-Activating Kinase (CAK) and in transcription as a component of the general transcription factor TFIIH. Length = 282

>gnl|CDD|173739 cd07838, STKc_CDK4_6_like, Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

 Score = 60.3 bits (147), Expect = 1e-10
 Identities = 53/197 (26%), Positives = 79/197 (40%), Gaps = 53/197 (26%)

Query: 28  YRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNE 87
           Y  L ++GEG +  VY                   K +D   L+     A+KKV +  +E
Sbjct: 1   YEELAEIGEGAYGTVY-------------------KARD---LNTGRFVALKKVRVPLSE 38

Query: 88  Q---LEMVREEIRVSSL-----FSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLD 139
           +   L  +RE   ++ L     F H N++ LLD     V        + +  L+F  H+D
Sbjct: 39  EGIPLSTLRE---IALLKQLESFEHPNIVRLLD-----VCHGPRTDRELKLTLVFE-HVD 89

Query: 140 ---GTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITC 196
               T L         K       +  +  Q+  G+  +HS      H D+KP NIL+T 
Sbjct: 90  QDLATYLSKCP-----KPGLPPETIKDLMRQLLRGVDFLHSHR--IVHRDLKPQNILVTS 142

Query: 197 RKGQPPLAILMDFGSAR 213
             GQ  +A   DFG AR
Sbjct: 143 D-GQVKIA---DFGLAR 155

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both expressed ubiquitously, associate with all three D cyclins (D1, D2 and D3), and phosphorylate the retinoblastoma (pRb) protein. They are also regulated by the INK4 family of inhibitors which associate with either the CDK alone or the CDK/cyclin complex. CDK4 and CDK6 show differences in subcellular localization, sensitivity to some inhibitors, timing in activation, tumor selectivity, and possibly substrate profiles. Although CDK4 and CDK6 seem to show some redundancy, they also have discrete, nonoverlapping functions. CDK6 plays an important role in cell differentiation. Length = 287

>gnl|CDD|173754 cd07865, STKc_CDK9, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

 Score = 59.7 bits (145), Expect = 2e-10
 Identities = 54/209 (25%), Positives = 91/209 (43%), Gaps = 42/209 (20%)

Query: 26  NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN 85
           ++Y  L ++G+G F  V+  +   T                          A+KKVL++N
Sbjct: 12  SKYEKLAKIGQGTFGEVFKARHKKTKQ----------------------IVALKKVLMEN 49

Query: 86  NEQ---LEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTL 142
            ++   +  +RE I++  L  H N++ L++  I   KA     +K   YL+F        
Sbjct: 50  EKEGFPITALRE-IKILQLLKHENVVNLIE--ICRTKATPYNRYKGSFYLVF------EF 100

Query: 143 LDH--AKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQ 200
            +H  A ++  K   F+ S++ ++   +  GL ++H  +    H D+K  NILIT + G 
Sbjct: 101 CEHDLAGLLSNKNVKFTLSEIKKVMKMLLNGLYYIHRNK--ILHRDMKAANILIT-KDGI 157

Query: 201 PPLAILMDFGSARPAQSKFALGQRRYSCR 229
             LA   DFG AR           RY+ R
Sbjct: 158 LKLA---DFGLARAFSLSKNSKPNRYTNR 183

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multiple steps of gene expression including transcription elongation, mRNA synthesis, processing, export, and translation. It also plays a role in mediating cytokine induced transcription networks such as IL6-induced STAT3 signaling. In addition, the CDK9/cyclin T2a complex promotes muscle differentiation and enhances the function of some myogenic regulatory factors. Length = 310

>gnl|CDD|143356 cd07851, STKc_p38, Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

 Score = 58.8 bits (143), Expect = 5e-10
 Identities = 55/205 (26%), Positives = 80/205 (39%), Gaps = 50/205 (24%)

Query: 21  VWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKK 80
           VW   +RY+ L  +G G +  V           SA       KV            A+KK
Sbjct: 10  VWEVPDRYQNLSPVGSGAYGQV----------CSAFDTKTGRKV------------AIKK 47

Query: 81  VL--IQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHL 138
           +    Q+    +    E+R+     H N++ LLD                + YL+   HL
Sbjct: 48  LSRPFQSAIHAKRTYRELRLLKHMDHENVIGLLD----VFTPASSLEDFQDVYLV--THL 101

Query: 139 DGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYA---HNDVKPGNILIT 195
            G   D   +++ +K   S   +  + YQI  GLK++HS     A   H D+KP NI + 
Sbjct: 102 MGA--DLNNIVKCQK--LSDDHIQFLVYQILRGLKYIHS-----AGIIHRDLKPSNIAVN 152

Query: 196 --CRKGQPPLAILMDFGSARPAQSK 218
             C      L IL DFG AR    +
Sbjct: 153 EDCE-----LKIL-DFGLARHTDDE 171

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. p38 substrates include other protein kinases and factors that regulate transcription, nuclear export, mRNA stability and translation. p38 kinases are drug targets for the inflammatory diseases psoriasis, rheumatoid arthritis, and chronic pulmonary disease. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta, which show varying substrate specificity and expression patterns. p38alpha and p38beta are ubiquitously expressed, p38gamma is predominantly found in skeletal muscle, and p38delta is found in the heart, lung, testis, pancreas, and small intestine. Length = 343

>gnl|CDD|143346 cd07841, STKc_CDK7, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

 Score = 58.4 bits (142), Expect = 6e-10
 Identities = 52/211 (24%), Positives = 84/211 (39%), Gaps = 57/211 (27%)

Query: 27  RYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNN 86
           RY   ++LGEG +A VY  ++  T                          A+KK  I+  
Sbjct: 1   RYEKGKKLGEGTYAVVYKARDKET----------------------GRIVAIKK--IKLG 36

Query: 87  EQLEMVREEIRVSSL--------FSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHL 138
           E  +  ++ I  ++L          H N++ LLD  +   K+N          L+F   +
Sbjct: 37  E-RKEAKDGINFTALREIKLLQELKHPNIIGLLD--VFGHKSN--------INLVFE-FM 84

Query: 139 DGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRK 198
           +  L    KV++ K    + +D+         GL+++HS      H D+KP N+LI    
Sbjct: 85  ETDL---EKVIKDKSIVLTPADIKSYMLMTLRGLEYLHSNW--ILHRDLKPNNLLIA-SD 138

Query: 199 GQPPLAILMDFGSARPAQSKFALGQRRYSCR 229
           G   LA   DFG AR     F    R+ + +
Sbjct: 139 GVLKLA---DFGLAR----SFGSPNRKMTHQ 162

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is also a component of the general transcription factor TFIIH, which phosphorylates the C-terminal domain (CTD) of RNA polymerase II when it is bound with unphosphorylated DNA, as present in the pre-initiation complex. Following phosphorylation, the CTD dissociates from the DNA which allows transcription initiation. Length = 298

>gnl|CDD|173736 cd07832, STKc_CCRK, Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

 Score = 56.5 bits (137), Expect = 2e-09
 Identities = 44/200 (22%), Positives = 72/200 (36%), Gaps = 64/200 (32%)

Query: 27  RYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNN 86
           RY+IL ++GEG    V+  K                            T A+KKV ++  
Sbjct: 1   RYKILGRIGEGAHGIVFKAK----------------------DRETGETVALKKVALRRL 38

Query: 87  E---QLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLL 143
           E     + +RE I+      H  ++ LLD                       V   G+  
Sbjct: 39  EGGIPNQALRE-IKALQACQHPYVVKLLD-----------------------VFPHGSGF 74

Query: 144 ---------DHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILI 194
                    D ++V++ ++     + V      +  G+ +MH+      H D+KP N+LI
Sbjct: 75  VLVMEYMPSDLSEVLRDEERPLPEAQVKSYMRMLLKGVAYMHANG--IMHRDLKPANLLI 132

Query: 195 TCRKGQPPLAILMDFGSARP 214
           +   G   +A   DFG AR 
Sbjct: 133 S-ADGVLKIA---DFGLARL 148

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of heart failure. Length = 286

>gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases

 Score = 56.1 bits (136), Expect = 2e-09
 Identities = 41/187 (21%), Positives = 79/187 (42%), Gaps = 45/187 (24%)

Query: 28  YRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNE 87
           + IL ++G+GGF  VY  +                      H       A+K + +++ E
Sbjct: 2   FEILEKIGKGGFGEVYKAR----------------------HKRTGKEVAIKVIKLESKE 39

Query: 88  QLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSW--KHEAYLLFPVHLDGTLLDH 145
           + E +  EI++     H N++               GS+  K E +++      G+L D 
Sbjct: 40  KKEKIINEIQILKKCKHPNIVKYY------------GSYLKKDELWIVMEFCSGGSLKD- 86

Query: 146 AKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAI 205
             ++++  +  + S +  +  ++  GL+++HS      H D+K  NIL+T   G+  L  
Sbjct: 87  --LLKSTNQTLTESQIAYVCKELLKGLEYLHSNG--IIHRDIKAANILLT-SDGEVKLI- 140

Query: 206 LMDFGSA 212
             DFG +
Sbjct: 141 --DFGLS 145

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPKK, which itself is phosphorylated and activated by a MAPKKK. Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAPKKK to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. Other STE family members include p21-activated kinases (PAKs) and class III myosins, among others. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain, which can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, as well as autophosphorylate the C-terminal motor domain. They play an important role in maintaining the structural integrity of photoreceptor cell microvilli. Length = 253

>gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

 Score = 54.9 bits (133), Expect = 6e-09
 Identities = 46/193 (23%), Positives = 68/193 (35%), Gaps = 50/193 (25%)

Query: 27  RYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNN 86
            +     LG G F  VYL  +  T +                        A+K V +  +
Sbjct: 1   EWTRGELLGRGSFGSVYLALDKDTGE----------------------LMAVKSVELSGD 38

Query: 87  --EQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLD----G 140
             E+LE +  EIR+ S   H N++              E   +     +F   L+    G
Sbjct: 39  SEEELEALEREIRILSSLQHPNIVRYYGS---------ERDEEKNTLNIF---LEYVSGG 86

Query: 141 TLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQ 200
           +L    K    K        + +   QI  GL ++HS      H D+K  NIL+    G 
Sbjct: 87  SLSSLLK----KFGKLPEPVIRKYTRQILEGLAYLHSNG--IVHRDIKGANILVDS-DGV 139

Query: 201 PPLAILMDFGSAR 213
             LA   DFG A+
Sbjct: 140 VKLA---DFGCAK 149

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant and fungal MAPKKKs. Also included in this subfamily are the cell division control proteins Schizosaccharomyces pombe Cdc7 and Saccharomyces cerevisiae Cdc15. Length = 260

>gnl|CDD|173770 cd08528, STKc_Nek10, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

 Score = 54.8 bits (132), Expect = 7e-09
 Identities = 47/208 (22%), Positives = 85/208 (40%), Gaps = 35/208 (16%)

Query: 28  YRILRQLGEGGFAYVYLVKETVTTDASAASGG--LANKVKDPSHLSDDGTYAMKKVLIQN 85
           Y +L  LG G F  VY V++         +G   LA K  +  + +       +   I +
Sbjct: 2   YAVLEHLGSGAFGCVYKVRKK-------NNGQNLLALKEINVHNPAFGKDKRERDKSIGD 54

Query: 86  N-EQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLD 144
              ++ +++E++R      H N++          K   E       Y++  +     L +
Sbjct: 55  IVSEVTIIKEQLR------HPNIVRYY-------KTFLEN---DRLYIVMDLIEGAPLGE 98

Query: 145 HAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLA 204
           H   ++ KK+ F+   +  IF Q+   L+++H  E    H D+ P NI++    G+    
Sbjct: 99  HFNSLKEKKQRFTEERIWNIFVQMVLALRYLHK-EKRIVHRDLTPNNIML----GEDDKV 153

Query: 205 ILMDFGSARPAQS----KFALGQRRYSC 228
            + DFG A+  Q        +G   YSC
Sbjct: 154 TITDFGLAKQKQPESKLTSVVGTILYSC 181

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24. Length = 269

>gnl|CDD|197581 smart00219, TyrKc, Tyrosine kinase, catalytic domain

 Score = 52.9 bits (128), Expect = 3e-08
 Identities = 39/186 (20%), Positives = 70/186 (37%), Gaps = 38/186 (20%)

Query: 29  RILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVL-IQNNE 87
            + ++LGEG F  VY               G          +      A+K +    + +
Sbjct: 2   TLGKKLGEGAFGEVYK--------------GKLKGKGGKKKV----EVAVKTLKEDASEQ 43

Query: 88  QLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAK 147
           Q+E    E R+     H N++ L     + V   +E       Y++      G LL +  
Sbjct: 44  QIEEFLREARIMRKLDHPNVVKL-----LGVCTEEEPL-----YIVMEYMEGGDLLSY-- 91

Query: 148 VMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILM 207
            ++  +   S SD+L    QI  G++++ S    + H D+   N L+        +  + 
Sbjct: 92  -LRKNRPKLSLSDLLSFALQIARGMEYLESK--NFIHRDLAARNCLVGENL----VVKIS 144

Query: 208 DFGSAR 213
           DFG +R
Sbjct: 145 DFGLSR 150

Phosphotransferases. Tyrosine-specific kinase subfamily. Length = 257

>gnl|CDD|173738 cd07835, STKc_CDK1_like, Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

 Score = 51.9 bits (125), Expect = 6e-08
 Identities = 54/197 (27%), Positives = 82/197 (41%), Gaps = 61/197 (30%)

Query: 28  YRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNE 87
           Y+ + ++GEG +  VY                   K +D          A+KK+      
Sbjct: 1   YQKVEKIGEGTYGVVY-------------------KARD---KLTGEIVALKKI------ 32

Query: 88  QLEMVRE-----EIRVSSLF---SHRNLLPLLD--HAIIAVKANQEGSWKHEAYLLFPVH 137
           +LE   E      IR  SL    +H N++ LLD  H+            +++ YL+F   
Sbjct: 33  RLETEDEGVPSTAIREISLLKELNHPNIVRLLDVVHS------------ENKLYLVFE-F 79

Query: 138 LDGTLLDHAKVMQTKKEFFSTSDVLQIF-YQICAGLKHMHSLEPPYAHNDVKPGNILITC 196
           LD   LD  K M +         +++ + YQ+  G+ + HS      H D+KP N+LI  
Sbjct: 80  LD---LDLKKYMDSSPLTGLDPPLIKSYLYQLLQGIAYCHSHR--VLHRDLKPQNLLID- 133

Query: 197 RKGQPPLAILMDFGSAR 213
           R+G   LA   DFG AR
Sbjct: 134 REGALKLA---DFGLAR 147

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 phase entry and progression while the CDK1/cyclin B complex is critical for G2 to M phase transition. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. Studies in knockout mice revealed that CDK1 can compensate for the loss of the cdk2 gene as it can also bind cyclin E and drive G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 283

>gnl|CDD|214568 smart00221, STYKc, Protein kinase; unclassified specificity

 Score = 51.8 bits (125), Expect = 8e-08
 Identities = 39/191 (20%), Positives = 71/191 (37%), Gaps = 47/191 (24%)

Query: 29  RILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVL-IQNNE 87
            + ++LGEG F  VY               G      D   +      A+K +    + +
Sbjct: 2   TLGKKLGEGAFGEVYK--------------GTLKGKGDGKEV----EVAVKTLKEDASEQ 43

Query: 88  QLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLD-GTLLDHA 146
           Q+E    E R+     H N++ LL               +    ++   ++  G LLD+ 
Sbjct: 44  QIEEFLREARIMRKLDHPNIVKLL-GVCTE---------EEPLMIVME-YMPGGDLLDY- 91

Query: 147 KVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILI----TCRKGQPP 202
            + + + +  S SD+L    QI  G++++ S    + H D+   N L+      +     
Sbjct: 92  -LRKNRPKELSLSDLLSFALQIARGMEYLESK--NFIHRDLAARNCLVGENLVVKIS--- 145

Query: 203 LAILMDFGSAR 213
                DFG +R
Sbjct: 146 -----DFGLSR 151

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. Length = 258

>gnl|CDD|143385 cd07880, STKc_p38gamma_MAPK12, Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

 Score = 51.9 bits (124), Expect = 9e-08
 Identities = 59/202 (29%), Positives = 85/202 (42%), Gaps = 44/202 (21%)

Query: 21  VWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKK 80
           +W   +RYR L+Q+G G +  V           SA       KV            A+KK
Sbjct: 10  IWEVPDRYRDLKQVGSGAYGTV----------CSALDRRTGAKV------------AIKK 47

Query: 81  VLIQNNEQLEMVR--EEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHL 138
           +      +L   R   E+R+     H N++ LLD        +      H+ YL+ P   
Sbjct: 48  LYRPFQSELFAKRAYRELRLLKHMKHENVIGLLD----VFTPDLSLDRFHDFYLVMPFM- 102

Query: 139 DGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILIT--C 196
            GT  D  K+M  K E  S   +  + YQ+  GLK++H+      H D+KPGN+ +   C
Sbjct: 103 -GT--DLGKLM--KHEKLSEDRIQFLVYQMLKGLKYIHA--AGIIHRDLKPGNLAVNEDC 155

Query: 197 RKGQPPLAILMDFGSARPAQSK 218
                 L IL DFG AR   S+
Sbjct: 156 E-----LKIL-DFGLARQTDSE 171

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12, is predominantly expressed in skeletal muscle. Unlike p38alpha and p38beta, p38gamma is insensitive to pyridinylimidazoles. It displays an antagonizing function compared to p38alpha. p38gamma inhibits, while p38alpha stimulates, c-Jun phosphorylation and AP-1 mediated transcription. p38gamma also plays a role in the signaling between Ras and the estrogen receptor and has been implicated to increase cell invasion and breast cancer progression. In Xenopus, p38gamma is critical in the meiotic maturation of oocytes. Length = 343

>gnl|CDD|143338 cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

 Score = 51.6 bits (124), Expect = 9e-08
 Identities = 45/193 (23%), Positives = 79/193 (40%), Gaps = 40/193 (20%)

Query: 26  NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN 85
           N+Y +L  +GEG +  V   +   T +  A       K K+    S+D     K  L   
Sbjct: 1   NKYEVLGVVGEGAYGVVLKCRNKATGEIVA-----IKKFKE----SEDDEDVKKTAL--- 48

Query: 86  NEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDH 145
                    E++V     H N++ L +    A +       K   YL+F  +++ TLL+ 
Sbjct: 49  --------REVKVLRQLRHENIVNLKE----AFR------RKGRLYLVFE-YVERTLLE- 88

Query: 146 AKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAI 205
             +++          V    +Q+   + + HS      H D+KP NIL++    +  +  
Sbjct: 89  --LLEASPGGLPPDAVRSYIWQLLQAIAYCHSHN--IIHRDIKPENILVS----ESGVLK 140

Query: 206 LMDFGSARPAQSK 218
           L DFG AR  +++
Sbjct: 141 LCDFGFARALRAR 153

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning and memory. Length = 288

>gnl|CDD|173753 cd07864, STKc_CDK12, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

 Score = 51.3 bits (123), Expect = 1e-07
 Identities = 49/189 (25%), Positives = 83/189 (43%), Gaps = 36/189 (19%)

Query: 28  YRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNE 87
           + I+ Q+GEG +  VY  ++  T +                        A+KKV + N +
Sbjct: 9   FDIIGQIGEGTYGQVYKARDKDTGE----------------------LVALKKVRLDNEK 46

Query: 88  Q---LEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLD 144
           +   +  +R EI++    +HRN++ L +       A      K   YL+F  ++D  L+ 
Sbjct: 47  EGFPITAIR-EIKILRQLNHRNIVNLKEIVTDKQDALDFKKDKGAFYLVFE-YMDHDLMG 104

Query: 145 HAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLA 204
              ++++    FS   +     Q+  GL + H  +  + H D+K  NIL+   KGQ  LA
Sbjct: 105 ---LLESGLVHFSEDHIKSFMKQLLEGLNYCH--KKNFLHRDIKCSNILLN-NKGQIKLA 158

Query: 205 ILMDFGSAR 213
              DFG AR
Sbjct: 159 ---DFGLAR 164

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely expressed in tissues. It interacts with cyclins L1 and L2, and plays roles in regulating transcription and alternative splicing. Length = 302

>gnl|CDD|173660 cd05123, STKc_AGC, Catalytic domain of AGC family Protein Serine/Threonine Kinases

 Score = 51.0 bits (123), Expect = 1e-07
 Identities = 52/190 (27%), Positives = 72/190 (37%), Gaps = 57/190 (30%)

Query: 34  LGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAM----KKVLIQNNEQL 89
           LG+G F  V LV+                             YAM    KK +I+  E  
Sbjct: 1   LGKGSFGKVLLVR----------------------KKDTGKLYAMKVLKKKKIIKRKEV- 37

Query: 90  EMVREEIRVSSLFSHRNLLPLLDHAIIAVK---ANQEGSWKHEAYLLFPVHLDGTLLDHA 146
           E    E         RN+L  ++H  I VK   A Q    + + YL+      G L  H 
Sbjct: 38  EHTLTE---------RNILSRINHPFI-VKLHYAFQT---EEKLYLVLEYAPGGELFSH- 83

Query: 147 KVMQTKKEFFSTSDVLQIFY--QICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLA 204
             +  K+  FS       FY  +I   L+++HSL     + D+KP NIL+    G     
Sbjct: 84  --LS-KEGRFSEERAR--FYAAEIVLALEYLHSLG--IIYRDLKPENILL-DADGH---I 132

Query: 205 ILMDFGSARP 214
            L DFG A+ 
Sbjct: 133 KLTDFGLAKE 142

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the turn motif. Phosphorylation at the A-loop is required of most AGC kinases, which results in a disorder-to-order transition of the A-loop. The ordered conformation results in the access of substrates and ATP to the active site. A subset of AGC kinases with C-terminal extensions containing the HM also requires phosphorylation at this site. Phosphorylation at the HM allows the C-terminal extension to form an ordered structure that packs into the hydrophobic pocket of the catalytic domain, which then reconfigures the kinase into an active bi-lobed state. In addition, growth factor-activated AGC kinases such as PKB, p70S6K, RSK, MSK, PKC, and SGK, require phosphorylation at the turn motif (also called tail or zipper site), located N-terminal to the HM at the C-terminal extension. AGC kinases regulate many cellular processes including division, growth, survival, metabolism, motility, and differentiation. Many are implicated in the development of various human diseases. Length = 250

>gnl|CDD|173672 cd05581, STKc_PDK1, Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

 Score = 50.7 bits (122), Expect = 2e-07
 Identities = 41/192 (21%), Positives = 73/192 (38%), Gaps = 46/192 (23%)

Query: 26  NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMK----KV 81
           + ++  + +GEG F+ V L KE  T           NK            YA+K    + 
Sbjct: 1   DDFKFGKIIGEGSFSTVVLAKEKET-----------NK-----------EYAIKILDKRQ 38

Query: 82  LIQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGT 141
           LI+  +   +  E+  ++ L  H  ++ L          ++E       Y +     +G 
Sbjct: 39  LIKEKKVKYVKIEKEVLTRLNGHPGIIKLYYTF-----QDEE-----NLYFVLEYAPNGE 88

Query: 142 LLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQP 201
           LL + +    K              +I   L+++HS      H D+KP NIL+  +    
Sbjct: 89  LLQYIR----KYGSLDEKCTRFYAAEILLALEYLHSKG--IIHRDLKPENILLD-KDMH- 140

Query: 202 PLAILMDFGSAR 213
               + DFG+A+
Sbjct: 141 --IKITDFGTAK 150

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to autophosphorylate and is constitutively active in mammalian cells. PDK1 is essential for normal embryo development and is important in regulating cell volume. Length = 280

>gnl|CDD|132942 cd06611, STKc_SLK_like, Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

 Score = 50.5 bits (121), Expect = 2e-07
 Identities = 52/210 (24%), Positives = 84/210 (40%), Gaps = 54/210 (25%)

Query: 20  DVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMK 79
           D+W       I+ +LG+G F  VY  +    T   AA+                     K
Sbjct: 5   DIW------EIIGELGDGAFGKVYKAQHK-ETGLFAAA---------------------K 36

Query: 80  KVLIQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHL- 138
            + I++ E+LE    EI + S   H N++ L +            ++ +E  L   +   
Sbjct: 37  IIQIESEEELEDFMVEIDILSECKHPNIVGLYE------------AYFYENKLWILIEFC 84

Query: 139 DGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRK 198
           DG  LD   +M   +   +   +  +  Q+   L  +HS +    H D+K GNIL+T   
Sbjct: 85  DGGALD--SIMLELERGLTEPQIRYVCRQMLEALNFLHSHK--VIHRDLKAGNILLT-LD 139

Query: 199 GQPPLAILMDFG-SARPAQSKFALGQRRYS 227
           G   LA   DFG SA+   +     Q+R +
Sbjct: 140 GDVKLA---DFGVSAKNKSTL----QKRDT 162

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. SmSLK is capable of activating the MAPK Jun N-terminal kinase (JNK) pathway in human embryonic kidney (HEK) cells as well as in Xenopus oocytes. It may participate in regulating MAPK cascades during host-parasite interactions. Length = 280

>gnl|CDD|173764 cd08224, STKc_Nek6_Nek7, Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

 Score = 49.7 bits (119), Expect = 3e-07
 Identities = 42/170 (24%), Positives = 69/170 (40%), Gaps = 31/170 (18%)

Query: 26  NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN 85
             ++I +++G+G F+ VY     +                      D    A+KKV I  
Sbjct: 2   GNFKIEKKIGKGQFSVVYKAICLL----------------------DGRVVALKKVQI-- 37

Query: 86  NEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDH 145
               EM+  + R   L    +LL  LDH  + +K        +E  ++  +   G L   
Sbjct: 38  ---FEMMDAKARQDCL-KEIDLLKQLDHPNV-IKYLASFIENNELNIVLELADAGDLSRM 92

Query: 146 AKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILIT 195
            K  + +K       + + F Q+C+ L+HMHS      H D+KP N+ IT
Sbjct: 93  IKHFKKQKRLIPERTIWKYFVQLCSALEHMHSKR--IMHRDIKPANVFIT 140

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may also be regulators of the p70 ribosomal S6 kinase. Length = 267

>gnl|CDD|173741 cd07843, STKc_CDC2L1, Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

 Score = 49.9 bits (120), Expect = 4e-07
 Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 6/70 (8%)

Query: 148 VMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILM 207
           +M+T K+ F  S+V  +  Q+ +G+ H+H       H D+K  N+L+   +G   +    
Sbjct: 95  LMETMKQPFLQSEVKCLMLQLLSGVAHLHDNW--ILHRDLKTSNLLLN-NRGILKIC--- 148

Query: 208 DFGSARPAQS 217
           DFG AR   S
Sbjct: 149 DFGLAREYGS 158

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the major isoform, associates with cyclin L and is expressed throughout the cell cycle. It is involved in RNA processing and the regulation of transcription. CDK11(p58) associates with cyclin D3 and is expressed during the G2/M phase of the cell cycle. It plays roles in spindle morphogenesis, centrosome maturation, sister chromatid cohesion, and the completion of mitosis. CDK11(p46) is formed from the larger isoforms by caspases during TNFalpha- and Fas-induced apoptosis. It functions as a downstream effector kinase in apoptotic signaling pathways and interacts with eukaryotic initiation factor 3f (eIF3f), p21-activated kinase (PAK1), and Ran-binding protein (RanBPM). Length = 293

>gnl|CDD|173758 cd08218, STKc_Nek1, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

 Score = 49.4 bits (118), Expect = 4e-07
 Identities = 52/201 (25%), Positives = 81/201 (40%), Gaps = 46/201 (22%)

Query: 27  RYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLI--Q 84
           +Y  ++++GEG F    LVK                         D   Y +K++ I   
Sbjct: 1   KYVKVKKIGEGSFGKAILVK----------------------SKEDGKQYVIKEINISKM 38

Query: 85  NNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPV--HLDGTL 142
           + ++ E  R+E+ V S   H N        I+  + + E     E   L+ V  + +G  
Sbjct: 39  SPKEREESRKEVAVLSNMKHPN--------IVQYQESFE-----ENGNLYIVMDYCEGGD 85

Query: 143 LDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPP 202
           L + K+   +   F    +L  F QIC  LKH+H  +    H D+K  NI +T + G   
Sbjct: 86  L-YKKINAQRGVLFPEDQILDWFVQICLALKHVH--DRKILHRDIKSQNIFLT-KDGTIK 141

Query: 203 LAILMDFGSARPAQSKFALGQ 223
           L    DFG AR   S   L +
Sbjct: 142 LG---DFGIARVLNSTVELAR 159

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycystic kidney disease, which is characterized by benign polycystic tumors formed by abnormal overgrowth of renal epithelial cells. It appears also to be involved in DNA damage response, and may be important for both correct DNA damage checkpoint activation and DNA repair. Length = 256

>gnl|CDD|132938 cd06607, STKc_TAO, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

 Score = 49.8 bits (119), Expect = 4e-07
 Identities = 54/202 (26%), Positives = 80/202 (39%), Gaps = 54/202 (26%)

Query: 25  ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLI- 83
           E  +  LR++G G F  VY  ++  T +                        A+KK+   
Sbjct: 14  EKLFTDLREIGHGSFGAVYFARDVRTNE----------------------VVAIKKMSYS 51

Query: 84  --QNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGT 141
             Q+NE+ + + +E+R      H N         I  K       +H A+L+    L   
Sbjct: 52  GKQSNEKWQDIIKEVRFLQQLRHPN--------TIEYKGCYLR--EHTAWLVMEYCLGSA 101

Query: 142 --LLD-HAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRK 198
             +L+ H K +Q  +        LQ       GL ++HS E    H D+K GNIL+T   
Sbjct: 102 SDILEVHKKPLQEVEIAAICHGALQ-------GLAYLHSHE--RIHRDIKAGNILLT--- 149

Query: 199 GQPPLAILMDFGSAR---PAQS 217
            +P    L DFGSA    PA S
Sbjct: 150 -EPGTVKLADFGSASLVSPANS 170

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily members, named TAO1, TAO2, and TAO3. Length = 307

>gnl|CDD|173748 cd07853, STKc_NLK, Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

 Score = 49.4 bits (118), Expect = 6e-07
 Identities = 62/214 (28%), Positives = 89/214 (41%), Gaps = 65/214 (30%)

Query: 64  VKDPSHLSDDGTYAMKKV--LIQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKAN 121
           V DP    D    A+KK+  + QN    + V  E+++   F H N+L  LD         
Sbjct: 19  VTDPR---DGKRVALKKMPNVFQNLVSCKRVFRELKMLCFFKHDNVLSALD--------- 66

Query: 122 QEGSWKHEAYLLFPVHLDGTLLDHAKV----MQTK--KEFFS----TSDVLQIF-YQICA 170
                     +L P H+D    +   V    MQ+   K   S    +SD +++F YQI  
Sbjct: 67  ----------ILQPPHID--PFEEIYVVTELMQSDLHKIIVSPQPLSSDHVKVFLYQILR 114

Query: 171 GLKHMHSLEPPYAHNDVKPGNILIT--CRKGQPPLAILMDFGSAR---PAQSKFA----- 220
           GLK++HS      H D+KPGN+L+   C      L I  DFG AR   P +SK       
Sbjct: 115 GLKYLHSAG--ILHRDIKPGNLLVNSNCV-----LKIC-DFGLARVEEPDESKHMTQEVV 166

Query: 221 ----------LGQRRYSCRNGLLSIVLHLSELLS 244
                     +G R Y+    + S+    +ELL 
Sbjct: 167 TQYYRAPEILMGSRHYTSAVDIWSVGCIFAELLG 200

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription factors from the TCF/LEF family, inhibiting their ability to activate the transcription of target genes. In prostate cancer cells, NLK is involved in regulating androgen receptor-mediated transcription and its expression is altered during cancer progression. Length = 372

>gnl|CDD|177649 PLN00009, PLN00009, cyclin-dependent kinase A; Provisional

 Score = 49.0 bits (117), Expect = 6e-07
 Identities = 53/193 (27%), Positives = 83/193 (43%), Gaps = 48/193 (24%)

Query: 26  NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKV-LIQ 84
           ++Y  + ++GEG +  VY  ++ VT +                      T A+KK+ L Q
Sbjct: 2   DQYEKVEKIGEGTYGVVYKARDRVTNE----------------------TIALKKIRLEQ 39

Query: 85  NNEQL-EMVREEIRVSSLFSHRNLLPLLD--HAIIAVKANQEGSWKHEAYLLFPVHLDGT 141
            +E +      EI +     H N++ L D  H+            +   YL+F  +LD  
Sbjct: 40  EDEGVPSTAIREISLLKEMQHGNIVRLQDVVHS------------EKRLYLVFE-YLD-- 84

Query: 142 LLDHAKVMQTKKEFFSTSDVLQIF-YQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQ 200
            LD  K M +  +F     +++ + YQI  G+ + HS      H D+KP N+LI  R   
Sbjct: 85  -LDLKKHMDSSPDFAKNPRLIKTYLYQILRGIAYCHSHR--VLHRDLKPQNLLIDRRTNA 141

Query: 201 PPLAILMDFGSAR 213
             LA   DFG AR
Sbjct: 142 LKLA---DFGLAR 151

Length = 294

>gnl|CDD|143368 cd07863, STKc_CDK4, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

 Score = 48.4 bits (115), Expect = 1e-06
 Identities = 62/220 (28%), Positives = 91/220 (41%), Gaps = 56/220 (25%)

Query: 27  RYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTY-AMKKVLIQN 85
           +Y  + ++G G +  VY                   K +DP      G + A+K V +Q 
Sbjct: 1   QYEPVAEIGVGAYGTVY-------------------KARDP----HSGHFVALKSVRVQT 37

Query: 86  NEQ---LEMVREEIRVSSL--FSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDG 140
           NE    L  VRE   +  L  F H N++ L+D     V A      + +  L+F  H+D 
Sbjct: 38  NEDGLPLSTVREVALLKRLEAFDHPNIVRLMD-----VCATSRTDRETKVTLVFE-HVDQ 91

Query: 141 TLLDH-AKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKG 199
            L  +  KV        +  D+++   Q   GL  +H+      H D+KP NIL+T   G
Sbjct: 92  DLRTYLDKVPPPGLPAETIKDLMR---QFLRGLDFLHA--NCIVHRDLKPENILVTSG-G 145

Query: 200 QPPLAILMDFGSARPAQSKFALGQRRYSCRNGLLSIVLHL 239
           Q  LA   DFG AR            YSC+  L  +V+ L
Sbjct: 146 QVKLA---DFGLARI-----------YSCQMALTPVVVTL 171

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the nucleus. CDK4 also shows kinase activity towards Smad3, a signal transducer of transforming growth factor (TGF)-beta signaling which modulates transcription and plays a role in cell proliferation and apoptosis. CDK4 is inhibited by the p21 inhibitor and is specifically mutated in human melanoma. Length = 288

>gnl|CDD|173692 cd05601, STKc_CRIK, Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

 Score = 47.9 bits (114), Expect = 2e-06
 Identities = 50/181 (27%), Positives = 75/181 (41%), Gaps = 42/181 (23%)

Query: 34  LGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVR 93
           +G G F  V +V+E  T D  A       KV             MKK ++   E +    
Sbjct: 9   VGRGHFGEVQVVREKATGDIYAM------KV-------------MKKSVLLAQETVSFFE 49

Query: 94  EEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKK 153
           EE  + S+ S+   +P L +A       Q+   K   YL+      G LL    ++   +
Sbjct: 50  EERDILSI-SNSPWIPQLQYAF------QD---KDNLYLVMEYQPGGDLL---SLLNRYE 96

Query: 154 EFFSTSDVLQIFY--QICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGS 211
           + F     +  FY  ++   +  +H +   Y H D+KP N+LI  R G   LA   DFGS
Sbjct: 97  DQFDED--MAQFYLAELVLAIHSVHQMG--YVHRDIKPENVLID-RTGHIKLA---DFGS 148

Query: 212 A 212
           A
Sbjct: 149 A 149

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnormal cytokinesis and massive apoptosis in neuronal precursors. A Down syndrome critical region protein TTC3 interacts with CRIK and inhibits CRIK-dependent neuronal differentiation and neurite extension. Length = 330

>gnl|CDD|219530 pfam07714, Pkinase_Tyr, Protein tyrosine kinase

 Score = 47.1 bits (113), Expect = 2e-06
 Identities = 41/186 (22%), Positives = 69/186 (37%), Gaps = 38/186 (20%)

Query: 29  RILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN-NE 87
            + ++LGEG F  VY               G      +      +   A+K +      E
Sbjct: 2   ELGKKLGEGAFGEVYK--------------GTLKGDGE----GTETKVAVKTLKEGASEE 43

Query: 88  QLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAK 147
           + E   EE  +    SH N++ LL                   Y++      G LLD   
Sbjct: 44  EREEFLEEASIMKKLSHPNIVRLL-GVCTQ---------GEPLYIVTEYMPGGDLLDF-- 91

Query: 148 VMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILM 207
            ++   E  +  D+LQ+  QI  G++++ S    + H D+   N L+T       +  + 
Sbjct: 92  -LRKHGEKLTLKDLLQMALQIAKGMEYLESK--NFVHRDLAARNCLVTE----NLVVKIS 144

Query: 208 DFGSAR 213
           DFG +R
Sbjct: 145 DFGLSR 150

Length = 258

>gnl|CDD|173671 cd05580, STKc_PKA, Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

 Score = 46.8 bits (112), Expect = 4e-06
 Identities = 49/193 (25%), Positives = 75/193 (38%), Gaps = 53/193 (27%)

Query: 28  YRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMK---KVLIQ 84
           +  ++ LG G F  V LV+                      H      YA+K   K  I 
Sbjct: 3   FEFIKTLGTGSFGRVMLVR----------------------HKGSGKYYALKILSKAKIV 40

Query: 85  NNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEA--YLLFPVHLDGTL 142
             +Q+E V  E R+     H    P L         N  GS++ ++  YL+      G L
Sbjct: 41  KLKQVEHVLNEKRILQSIRH----PFL--------VNLYGSFQDDSNLYLVMEYVPGGEL 88

Query: 143 LDHAKVMQTKKEFFSTSDVLQIFY--QICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQ 200
             H +    K   F    V + FY  Q+   L+++HSL+    + D+KP N+L+    G 
Sbjct: 89  FSHLR----KSGRFP-EPVAR-FYAAQVVLALEYLHSLD--IVYRDLKPENLLL-DSDGY 139

Query: 201 PPLAILMDFGSAR 213
             +    DFG A+
Sbjct: 140 IKIT---DFGFAK 149

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubiquitously in cells and interacts with many different downstream targets. It plays a role in the regulation of diverse processes such as growth, development, memory, metabolism, gene expression, immunity, and lipolysis. Length = 290

>gnl|CDD|173664 cd05573, STKc_ROCK_NDR_like, Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

 Score = 46.9 bits (112), Expect = 4e-06
 Identities = 52/225 (23%), Positives = 79/225 (35%), Gaps = 79/225 (35%)

Query: 26  NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMK---KVL 82
           + + +++ +G G F  V+LV++                 KD   +     YAMK   K  
Sbjct: 1   DDFEVIKVIGRGAFGEVWLVRD-----------------KDTGQV-----YAMKVLRKSD 38

Query: 83  IQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTL 142
           +    Q+  VR E         R++L   D   I VK     S++ E +L          
Sbjct: 39  MIKRNQIAHVRAE---------RDILADADSPWI-VKLYY--SFQDEEHLYL-------- 78

Query: 143 LDHAKVMQTKKEFFSTSDVLQI-------------FY--QICAGLKHMHSLEPPYAHNDV 187
                VM    E+    D++ +             FY  ++   L  +H L   + H D+
Sbjct: 79  -----VM----EYMPGGDLMNLLIRKDVFPEETARFYIAELVLALDSVHKLG--FIHRDI 127

Query: 188 KPGNILITCRKGQPPLAILMDFGSARPAQSKFALGQRRYSCRNGL 232
           KP NILI    G   LA   DFG       K    + R    N  
Sbjct: 128 KPDNILID-ADGHIKLA---DFGLC----KKMNKAKDREYYLNDS 164

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Proteins in this subfamily are involved in regulating many cellular functions including contraction, motility, division, proliferation, apoptosis, morphogenesis, and cytokinesis. Length = 350

>gnl|CDD|143367 cd07862, STKc_CDK6, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

 Score = 46.2 bits (109), Expect = 5e-06
 Identities = 52/193 (26%), Positives = 87/193 (45%), Gaps = 42/193 (21%)

Query: 27  RYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTY-AMKKVLIQN 85
           +Y  + ++GEG +  V+                   K +D   L + G + A+K+V +Q 
Sbjct: 2   QYECVAEIGEGAYGKVF-------------------KARD---LKNGGRFVALKRVRVQT 39

Query: 86  NEQ---LEMVREE--IRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDG 140
            E+   L  +RE   +R    F H N++ L D   ++ + ++E     +  L+F  H+D 
Sbjct: 40  GEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVS-RTDRET----KLTLVFE-HVDQ 93

Query: 141 TLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQ 200
            L  +    +  +    T  +  + +Q+  GL  +HS      H D+KP NIL+T   GQ
Sbjct: 94  DLTTYLD--KVPEPGVPTETIKDMMFQLLRGLDFLHSHR--VVHRDLKPQNILVT-SSGQ 148

Query: 201 PPLAILMDFGSAR 213
             LA   DFG AR
Sbjct: 149 IKLA---DFGLAR 158

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytoplasm. It is also present in the ruffling edge of spreading fibroblasts and may play a role in cell spreading. It binds to the p21 inhibitor without any effect on its own activity and it is overexpressed in squamous cell carcinomas and neuroblastomas. CDK6 has also been shown to inhibit cell differentiation in many cell types. Length = 290

>gnl|CDD|173749 cd07855, STKc_ERK5, Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

 Score = 46.2 bits (110), Expect = 8e-06
 Identities = 47/204 (23%), Positives = 77/204 (37%), Gaps = 57/204 (27%)

Query: 25  ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ 84
            +RY+ +  +G G +  V    +T +    A        +K   H  D  T A K+ L  
Sbjct: 4   GSRYKPIENIGSGAYGVVCSAIDTRSGKKVA--------IKKIPHAFDVPTLA-KRTL-- 52

Query: 85  NNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFP--------- 135
                     E+++   F H N++ + D  I+      +     + Y++           
Sbjct: 53  ---------RELKILRHFKHDNIIAIRD--ILRPPGA-DFK---DVYVVMDLMESDLHHI 97

Query: 136 VHLDGTL-LDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILI 194
           +H D  L  +H +       +F         YQ+  GLK++HS      H D+KP N+L+
Sbjct: 98  IHSDQPLTEEHIR-------YF--------LYQLLRGLKYIHSAN--VIHRDLKPSNLLV 140

Query: 195 TCRKGQPPLAILMDFGSARPAQSK 218
                   L I  DFG AR   S 
Sbjct: 141 N---EDCELRI-GDFGMARGLSSS 160

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the MAP2K MEK5, which in turn is regulated by the MAP3Ks MEKK2 and MEKK3. Activated ERK5 phosphorylates its targets including myocyte enhancer factor 2 (MEF2), Sap1a, c-Myc, and RSK. It plays a role in EGF-induced cell proliferation during the G1/S phase transition. Studies on knockout mice revealed that ERK5 is essential for cardiovascular development and plays an important role in angiogenesis. It is also critical for neural differentiation and survival. The ERK5 pathway has been implicated in the pathogenesis of many diseases including cancer, cardiac hypertrophy, and atherosclerosis. Length = 334

>gnl|CDD|143384 cd07879, STKc_p38delta_MAPK13, Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

 Score = 45.3 bits (107), Expect = 2e-05
 Identities = 39/126 (30%), Positives = 57/126 (45%), Gaps = 21/126 (16%)

Query: 95  EIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKE 154
           E+ +     H N++ LLD    AV  ++      + YL+ P        D  K+M     
Sbjct: 64  ELTLLKHMQHENVIGLLDVFTSAVSGDE----FQDFYLVMPY----MQTDLQKIMGHP-- 113

Query: 155 FFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILIT--CRKGQPPLAILMDFGSA 212
             S   V  + YQ+  GLK++HS      H D+KPGN+ +   C      L IL DFG A
Sbjct: 114 -LSEDKVQYLVYQMLCGLKYIHS--AGIIHRDLKPGNLAVNEDCE-----LKIL-DFGLA 164

Query: 213 RPAQSK 218
           R A ++
Sbjct: 165 RHADAE 170

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13, is found in skeletal muscle, heart, lung, testis, pancreas, and small intestine. It regulates microtubule function by phosphorylating Tau. It activates the c-jun promoter and plays a role in G2 cell cycle arrest. It also controls the degration of c-Myb, which is associated with myeloid leukemia and poor prognosis in colorectal cancer. p38delta is the main isoform involved in regulating the differentiation and apoptosis of keratinocytes. Length = 342

>gnl|CDD|173624 cd00192, PTKc, Catalytic domain of Protein Tyrosine Kinases

 Score = 44.8 bits (107), Expect = 2e-05
 Identities = 41/188 (21%), Positives = 67/188 (35%), Gaps = 41/188 (21%)

Query: 32  RQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKV-LIQNNEQLE 90
           ++LGEG F  VY               G        +        A+K +    + E+ +
Sbjct: 1   KKLGEGAFGEVYK--------------GKLKGKDGKTTEV-----AVKTLKEDASEEERK 41

Query: 91  MVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDH----- 145
              +E RV     H N++ LL          +E       YL+      G LLD+     
Sbjct: 42  DFLKEARVMKKLGHPNVVRLL-GVCT-----EEEPL----YLVLEYMEGGDLLDYLRKSR 91

Query: 146 AKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAI 205
                 +K   S  D+L    QI  G++++ S    + H D+   N L+        ++ 
Sbjct: 92  PVFPSPEKSTLSLKDLLSFAIQIAKGMEYLASK--KFVHRDLAARNCLVG-EDLVVKIS- 147

Query: 206 LMDFGSAR 213
             DFG +R
Sbjct: 148 --DFGLSR 153

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers. Length = 262

>gnl|CDD|143379 cd07874, STKc_JNK3, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

 Score = 44.7 bits (105), Expect = 2e-05
 Identities = 45/151 (29%), Positives = 74/151 (49%), Gaps = 19/151 (12%)

Query: 73  DGTYAMKKVL--IQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEA 130
           D   A+KK+    QN    +    E+ +    +H+N++ LL+      K+ +E     + 
Sbjct: 42  DRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLN-VFTPQKSLEE---FQDV 97

Query: 131 YLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPG 190
           YL+  + +D  L    +V+Q + +    S +L   YQ+  G+KH+HS      H D+KP 
Sbjct: 98  YLVMEL-MDANL---CQVIQMELDHERMSYLL---YQMLCGIKHLHS--AGIIHRDLKPS 148

Query: 191 NILITCRKGQPPLAILMDFGSARPAQSKFAL 221
           NI++   K    L IL DFG AR A + F +
Sbjct: 149 NIVV---KSDCTLKIL-DFGLARTAGTSFMM 175

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, stroke, sciatic axotomy neural death, and neuronal death due to NGF deprivation, oxidative stress, or exposure to beta-amyloid peptide. This suggests that JNK3 may play roles in the pathogenesis of these diseases. Length = 355

>gnl|CDD|132943 cd06612, STKc_MST1_2, Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 45/199 (22%), Positives = 75/199 (37%), Gaps = 69/199 (34%)

Query: 25  ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ 84
           E  + IL +LGEG +  VY  K                      H       A+K V + 
Sbjct: 2   EEVFDILEKLGEGSYGSVY--KAI--------------------HKETGQVVAIKVVPV- 38

Query: 85  NNEQLEMVREEIRV-------------SSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAY 131
             E L+ + +EI +              S F + +L  ++++                  
Sbjct: 39  -EEDLQEIIKEISILKQCDSPYIVKYYGSYFKNTDLWIVMEYCGA--------------- 82

Query: 132 LLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGN 191
                   G++ D   +M+   +  +  ++  I YQ   GL+++HS +    H D+K GN
Sbjct: 83  --------GSVSD---IMKITNKTLTEEEIAAILYQTLKGLEYLHSNK--KIHRDIKAGN 129

Query: 192 ILITCRKGQPPLAILMDFG 210
           IL+   +GQ  LA   DFG
Sbjct: 130 ILLN-EEGQAKLA---DFG 144

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a MAPK kinase) and MEKK1 (a MAPK kinase kinase) by acting as a MAPK kinase kinase kinase (MAPKKKK). Activation of JNK by MST1 leads to caspase activation and apoptosis. MST1 has also been implicated in cell proliferation and differentiation. Krs1 may regulate cell growth arrest and apoptosis in response to cellular stress. Length = 256

>gnl|CDD|132969 cd06638, STKc_myosinIIIA, Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

 Score = 43.8 bits (103), Expect = 4e-05
 Identities = 50/206 (24%), Positives = 77/206 (37%), Gaps = 39/206 (18%)

Query: 5   LSGLNALYDSVNGGGDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKV 64
           LSG   ++DS     D W       I+  +G+G +  V+ V      + S A    A K+
Sbjct: 3   LSGKTIIFDSFPDPSDTW------EIIETIGKGTYGKVFKVLNKK--NGSKA----AVKI 50

Query: 65  KDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEG 124
            DP H  D+   A   +L                 +L  H N++            N + 
Sbjct: 51  LDPIHDIDEEIEAEYNIL----------------KALSDHPNVVKFYGMYYKKDVKNGDQ 94

Query: 125 SWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAH 184
            W     L+  +   G++ D  K    + E      +  I ++   GL+H+H       H
Sbjct: 95  LW-----LVLELCNGGSVTDLVKGFLKRGERMEEPIIAYILHEALMGLQHLH--VNKTIH 147

Query: 185 NDVKPGNILITCRKGQPPLAILMDFG 210
            DVK  NIL+T   G      L+DFG
Sbjct: 148 RDVKGNNILLTTEGG----VKLVDFG 169

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear hair cells. It is localized to the distal ends of actin-bundled structures. Mutations in human myosin IIIA are responsible for progressive nonsyndromic hearing loss. Human myosin IIIA possesses ATPase and kinase activities, and the ability to move actin filaments in a motility assay. It may function as a cellular transporter capable of moving along actin bundles in sensory cells. Length = 286

>gnl|CDD|143361 cd07856, STKc_Sty1_Hog1, Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

 Score = 44.0 bits (104), Expect = 4e-05
 Identities = 57/206 (27%), Positives = 83/206 (40%), Gaps = 53/206 (25%)

Query: 19  GDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAM 78
           G V+   NRY  L+ +G G F  V   ++ +T    A       K+  P       T  +
Sbjct: 3   GTVFEITNRYVDLQPVGMGAFGLVCSARDQLTGQNVAI-----KKIMKPF-----STPVL 52

Query: 79  KKVLIQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHL 138
            K            RE +++     H N++ L D  I         S   + Y +    L
Sbjct: 53  AK---------RTYRE-LKLLKHLRHENIISLSDIFI---------SPLEDIYFV--TEL 91

Query: 139 DGTLLDHAKVMQTK---KEFFSTSDVLQIF-YQICAGLKHMHSLEPPYAHNDVKPGNILI 194
            GT  D  +++ ++   K+F      +Q F YQI  GLK++HS      H D+KP NILI
Sbjct: 92  LGT--DLHRLLTSRPLEKQF------IQYFLYQILRGLKYVHS--AGVVHRDLKPSNILI 141

Query: 195 --TCRKGQPPLAILMDFGSARPAQSK 218
              C      L I  DFG AR    +
Sbjct: 142 NENC-----DLKIC-DFGLARIQDPQ 161

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and UV radiation. Sty1 is regulated by the MAP2K Wis1, which is activated by the MAP3Ks Wis4 and Win1, which receive signals of the stress condition from membrane-spanning histidine kinases Mak1-3. Activated Sty1 stabilizes the Atf1 transcription factor and induces transcription of Atf1-dependent genes of the core environmetal stress response (CESR). Hog1 is the key element in the high osmolarity glycerol (HOG) pathway and is activated upon hyperosmotic stress. Activated Hog1 accumulates in the nucleus and regulates stress-induced transcription. The HOG pathway is mediated by two transmembrane osmosensors, Sln1 and Sho1. Length = 328

>gnl|CDD|173768 cd08228, STKc_Nek6, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

 Score = 43.5 bits (102), Expect = 4e-05
 Identities = 40/171 (23%), Positives = 69/171 (40%), Gaps = 37/171 (21%)

Query: 28  YRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLI---Q 84
           ++I +++G G F+ VY                     +    L D    A+KKV I    
Sbjct: 4   FQIEKKIGRGQFSEVY---------------------RATCLL-DRKPVALKKVQIFEMM 41

Query: 85  NNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLD 144
           + +  +   +EI +    +H N++  LD  I            +E  ++  +   G L  
Sbjct: 42  DAKARQDCVKEIDLLKQLNHPNVIKYLDSFIE----------DNELNIVLELADAGDLSQ 91

Query: 145 HAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILIT 195
             K  + +K       V + F Q+C+ ++HMHS      H D+KP N+ IT
Sbjct: 92  MIKYFKKQKRLIPERTVWKYFVQLCSAVEHMHSRR--VMHRDIKPANVFIT 140

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase and anaphase, and to the midbody during cytokinesis. Length = 267

>gnl|CDD|143354 cd07849, STKc_ERK1_2_like, Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

 Score = 43.4 bits (103), Expect = 5e-05
 Identities = 57/198 (28%), Positives = 83/198 (41%), Gaps = 56/198 (28%)

Query: 27  RYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNN 86
           RY+ L  +GEG +  V       T            KV            A+KK  I   
Sbjct: 6   RYQNLSYIGEGAYGMVCSATHKPTGV----------KV------------AIKK--ISPF 41

Query: 87  E-QLEMVR--EEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYL---LFPVHLDG 140
           E Q    R   EI++   F H N++ +LD  II   + +     ++ Y+   L       
Sbjct: 42  EHQTFCQRTLREIKILRRFKHENIIGILD--IIRPPSFES---FNDVYIVQELMET---- 92

Query: 141 TLLDHAKVMQTKKEFFSTSDVLQIF-YQICAGLKHMHSLEPPYAHNDVKPGNILI--TCR 197
              D  K+++T+     ++D +Q F YQI  GLK++HS      H D+KP N+L+   C 
Sbjct: 93  ---DLYKLIKTQH---LSNDHIQYFLYQILRGLKYIHSAN--VLHRDLKPSNLLLNTNC- 143

Query: 198 KGQPPLAILMDFGSARPA 215
                L I  DFG AR A
Sbjct: 144 ----DLKIC-DFGLARIA 156

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase kinase from the Raf family. ERK1/2 have numerous substrates, many of which are nuclear and participate in transcriptional regulation of many cellular processes. They regulate cell growth, cell proliferation, and cell cycle progression from G1 to S phase. Although the distinct roles of ERK1 and ERK2 have not been fully determined, it is known that ERK2 can maintain most functions in the absence of ERK1, and that the deletion of ERK2 is embryonically lethal. The MAPK, Fus3, regulates yeast mating processes including mating-specific gene expression, G1 arrest, mating projection, and cell fusion. Length = 336

>gnl|CDD|132965 cd06634, STKc_TAO2, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

 Score = 42.7 bits (100), Expect = 9e-05
 Identities = 48/198 (24%), Positives = 84/198 (42%), Gaps = 46/198 (23%)

Query: 25  ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ 84
           E  +  LR++G G F  VY  ++   ++  A        +K  S       Y+ K    Q
Sbjct: 14  EKLFSDLREIGHGSFGAVYFARDVRNSEVVA--------IKKMS-------YSGK----Q 54

Query: 85  NNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSW--KHEAYLLFPVHLDGTL 142
           +NE+ + + +E+R      H N +               G +  +H A+L+    ++  L
Sbjct: 55  SNEKWQDIIKEVRFLQKLRHPNTI------------QYRGCYLREHTAWLV----MEYCL 98

Query: 143 LDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPP 202
              + +++  K+     ++  + +    GL ++HS      H DVK GNIL++    +P 
Sbjct: 99  GSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHSHN--MIHRDVKAGNILLS----EPG 152

Query: 203 LAILMDFGSAR---PAQS 217
           L  L DFGSA    PA  
Sbjct: 153 LVKLGDFGSASIMAPANX 170

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. TAO2 contains a long C-terminal extension with autoinhibitory segments. It is activated by the release of this inhibition and the phosphorylation of its activation loop serine. TAO2 functions as a regulator of actin cytoskeletal and microtubule organization. In addition, it regulates the transforming growth factor-activated kinase 1 (TAK1), which is a MAPKKK that plays an essential role in the signaling pathways of tumor necrosis factor (TNF), interleukin 1 (IL-1), and Toll-like receptor (TLR). Length = 308

>gnl|CDD|132966 cd06635, STKc_TAO1, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

 Score = 42.8 bits (100), Expect = 1e-04
 Identities = 49/198 (24%), Positives = 85/198 (42%), Gaps = 46/198 (23%)

Query: 25  ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ 84
           E  +  LR++G G F  VY  ++  T +  A        +K  S       Y+ K    Q
Sbjct: 24  EKLFTDLREIGHGSFGAVYFARDVRTNEVVA--------IKKMS-------YSGK----Q 64

Query: 85  NNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSW--KHEAYLLFPVHLDGTL 142
           +NE+ + + +E++      H N +              +G +  +H A+L+    ++  L
Sbjct: 65  SNEKWQDIIKEVKFLQRIKHPNSI------------EYKGCYLREHTAWLV----MEYCL 108

Query: 143 LDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPP 202
              + +++  K+     ++  I +    GL ++HS      H D+K GNIL+T    +P 
Sbjct: 109 GSASDLLEVHKKPLQEVEIAAITHGALQGLAYLHSHN--MIHRDIKAGNILLT----EPG 162

Query: 203 LAILMDFGSA---RPAQS 217
              L DFGSA    PA S
Sbjct: 163 QVKLADFGSASIASPANS 180

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuronal apoptosis. TAO1 interacts with the checkpoint proteins BubR1 and Mad2, and plays an important role in regulating mitotic progression, which is required for both chromosome congression and checkpoint-induced anaphase delay. TAO1 may play a role in protecting genomic stability. Length = 317

>gnl|CDD|173663 cd05572, STKc_cGK_PKG, Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

 Score = 42.2 bits (100), Expect = 1e-04
 Identities = 46/201 (22%), Positives = 76/201 (37%), Gaps = 57/201 (28%)

Query: 34  LGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKV---LIQNNEQLE 90
           LG GGF  V LVK                        S + T+A+K V    I    Q E
Sbjct: 1   LGVGGFGRVELVK----------------------VKSKNRTFALKCVKKRHIVETGQQE 38

Query: 91  MVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEA--YLLFPVHLDGTLLDHAKV 148
            +  E         + +L   +H  I        ++K +   Y+L    L G L     +
Sbjct: 39  HIFSE---------KEILEECNHPFI---VKLYRTFKDKKYIYMLMEYCLGGELWT---I 83

Query: 149 MQTKKEFFSTSDVLQIFY--QICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAIL 206
           ++ +  F    +    FY   +    +++H+    Y   D+KP N+L+    G      L
Sbjct: 84  LRDRGLF---DEYTARFYIACVVLAFEYLHNRGIIY--RDLKPENLLLD-SNGYVK---L 134

Query: 207 MDFGSARPAQSKFALGQRRYS 227
           +DFG A+  +S    GQ+ ++
Sbjct: 135 VDFGFAKKLKS----GQKTWT 151

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowing autophosphorylation and activation of the kinase. cGKI is a soluble protein expressed in all smooth muscles, platelets, cerebellum, and kidney. It is also expressed at lower concentrations in other tissues. cGKII is a membrane-bound protein that is most abundantly expressed in the intestine. It is also present in the brain nuclei, adrenal cortex, kidney, lung, and prostate. cGKI is involved in the regulation of smooth muscle tone, smooth cell proliferation, and platelet activation. cGKII plays a role in the regulation of secretion, such as renin secretion by the kidney and aldosterone secretion by the adrenal. It also regulates bone growth and the circadian rhythm. Length = 262

>gnl|CDD|143380 cd07875, STKc_JNK1, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

 Score = 42.3 bits (99), Expect = 1e-04
 Identities = 43/147 (29%), Positives = 73/147 (49%), Gaps = 19/147 (12%)

Query: 77  AMKKVL--IQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLF 134
           A+KK+    QN    +    E+ +    +H+N++ LL+      K+ +E     + Y++ 
Sbjct: 53  AIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLN-VFTPQKSLEE---FQDVYIVM 108

Query: 135 PVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILI 194
            + +D  L    +V+Q + +    S +L   YQ+  G+KH+HS      H D+KP NI++
Sbjct: 109 EL-MDANL---CQVIQMELDHERMSYLL---YQMLCGIKHLHS--AGIIHRDLKPSNIVV 159

Query: 195 TCRKGQPPLAILMDFGSARPAQSKFAL 221
              K    L IL DFG AR A + F +
Sbjct: 160 ---KSDCTLKIL-DFGLARTAGTSFMM 182

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jnk1 or Jnk2) could survive but disruption of both genes resulted in lethality. However, recent studies have shown that JNK1 and JNK2 perform distinct functions through specific binding partners and substrates. JNK1 specifically binds with JAMP (JNK1-associated membrane protein), which regulates the duration of JNK1 activity in response to stimuli. Specific JNK1 substrates include Itch and SG10, which are implicated in Th2 responses and airway inflammation, and microtubule dynamics and axodendritic length, respectively. Mice deficient in Jnk1 are protected against arthritis, obesity, type 2 diabetes, cardiac cell death, and non-alcoholic liver disease, suggesting that JNK1 may play roles in the pathogenesis of these diseases. Length = 364

>gnl|CDD|173763 cd08223, STKc_Nek4, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

 Score = 42.3 bits (99), Expect = 1e-04
 Identities = 43/172 (25%), Positives = 74/172 (43%), Gaps = 41/172 (23%)

Query: 28  YRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNE 87
           Y  +R +G+G +  V LV+                      H +D   Y +KK+ ++N  
Sbjct: 2   YCFVRVVGKGSYGEVSLVR----------------------HRTDGKQYVIKKLNLRNAS 39

Query: 88  QLE--MVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPV--HLDGTLL 143
           + E     +E ++ S   H N        I+A +     SW+ E  LL+ V    +G  L
Sbjct: 40  RRERKAAEQEAQLLSQLKHPN--------IVAYRE----SWEGEDGLLYIVMGFCEGGDL 87

Query: 144 DHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILIT 195
            H K+ + K +    + V++ F QI   L+++H  E    H D+K  N+ +T
Sbjct: 88  YH-KLKEQKGKLLPENQVVEWFVQIAMALQYLH--EKHILHRDLKTQNVFLT 136

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown. Length = 257

>gnl|CDD|173632 cd05051, PTKc_DDR, Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 37/181 (20%), Positives = 67/181 (37%), Gaps = 24/181 (13%)

Query: 23  INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVL 82
                   + +LGEG F  V+L  E       +      N   D   L      A+K + 
Sbjct: 2   FPRQPLNFVEKLGEGQFGEVHL-CEADGLQDFSEKAFAENDNADAPVL-----VAVKVLR 55

Query: 83  I-QNNEQLEMVREEIRVSSLFSHRNLLPLL------DHAIIAVKANQEGSWKHEAYLLFP 135
              ++   E   +E+++ S  S  N+  LL          + ++  + G      +L   
Sbjct: 56  PDASDNAREDFLKEVKILSRLSDPNIARLLGVCTVDPPLCMIMEYMENGDLNQ--FLQKH 113

Query: 136 VHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILIT 195
           V     L  ++K         S S +L +  QI +G++++ SL   + H D+   N L+ 
Sbjct: 114 VAETSGLACNSK-------SLSFSTLLYMATQIASGMRYLESLN--FVHRDLATRNCLVG 164

Query: 196 C 196
            
Sbjct: 165 K 165

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including breast, colon, ovarian, brain, and lung. There is no evidence showing that DDRs act as transforming oncogenes. They are more likely to play a role in the regulation of tumor growth and metastasis. Length = 296

>gnl|CDD|173761 cd08221, STKc_Nek9, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 34/131 (25%), Positives = 60/131 (45%), Gaps = 22/131 (16%)

Query: 95  EIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHL--DGTLLDHAKVMQTK 152
           EI + SL  H N++   +H +             +  LL  +     GTL D  K+++ K
Sbjct: 49  EIVILSLLQHPNIIAYYNHFM------------DDNTLLIEMEYANGGTLYD--KIVRQK 94

Query: 153 KEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSA 212
            + F    VL   +QI + + ++H       H D+K  NI +T + G   L  L DFG +
Sbjct: 95  GQLFEEEMVLWYLFQIVSAVSYIHKAG--ILHRDIKTLNIFLT-KAG---LIKLGDFGIS 148

Query: 213 RPAQSKFALGQ 223
           +   S++++ +
Sbjct: 149 KILGSEYSMAE 159

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associates with FACT (FAcilitates Chromatin Transcription) and modulates interphase progression. It also interacts with Nek6, and Nek7, during mitosis, resulting in their activation. Length = 256

>gnl|CDD|143381 cd07876, STKc_JNK2, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

 Score = 42.3 bits (99), Expect = 1e-04
 Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 6/58 (10%)

Query: 164 IFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKFAL 221
           + YQ+  G+KH+HS      H D+KP NI++   K    L IL DFG AR A + F +
Sbjct: 128 LLYQMLCGIKHLHS--AGIIHRDLKPSNIVV---KSDCTLKIL-DFGLARTACTNFMM 179

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jnk1 or Jnk2) could survive but disruption of both genes resulted in lethality. However, recent studies have shown that JNK1 and JNK2 perform distinct functions through specific binding partners and substrates. JNK2 is specifically translocated to the mitochondria during dopaminergic cell death. Specific substrates include the microtubule-associated proteins DCX and Tau, as well as TIF-IA which is involved in ribosomal RNA synthesis regulation. Mice deficient in Jnk2 show protection against arthritis, type 1 diabetes, atherosclerosis, abdominal aortic aneurysm, cardiac cell death, TNF-induced liver damage, and tumor growth, indicating that JNK2 may play roles in the pathogenesis of these diseases. Length = 359

>gnl|CDD|173750 cd07857, STKc_MPK1, Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 50/200 (25%), Positives = 84/200 (42%), Gaps = 60/200 (30%)

Query: 27  RYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNN 86
           RY ++++LG+G +  V   +   T                    S++ T A+KK+    +
Sbjct: 1   RYELIKELGQGAYGIVCSARNAET--------------------SEEETVAIKKITNVFS 40

Query: 87  EQLEMVR--EEIRVSSLF-SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLL 143
           +++   R   E+++   F  H+N+  L D  I+                 FP + +   L
Sbjct: 41  KKILAKRALRELKLLRHFRGHKNITCLYDMDIV-----------------FPGNFNELYL 83

Query: 144 -------DHAKVMQTKKEFFSTSDVLQIF-YQICAGLKHMHSLEPPYAHNDVKPGNILIT 195
                  D  +++++ +    T    Q F YQI  GLK++HS      H D+KPGN+L+ 
Sbjct: 84  YEELMEADLHQIIRSGQPL--TDAHFQSFIYQILCGLKYIHSAN--VLHRDLKPGNLLVN 139

Query: 196 --CRKGQPPLAILMDFGSAR 213
             C      L I  DFG AR
Sbjct: 140 ADCE-----LKIC-DFGLAR 153

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall construction, morphogenesis, and ion homeostasis. MPK1 is activated in response to cell wall stress including heat stimulation, osmotic shock, UV irradiation, and any agents that interfere with cell wall biogenesis such as chitin antagonists, caffeine, or zymolase. MPK1 is regulated by the MAP2Ks Mkk1/2, which are regulated by the MAP3K Bck1. Pmk1 is also activated by multiple stresses including elevated temperatures, hyper- or hypotonic stress, glucose deprivation, exposure to cell-wall damaging compounds, and oxidative stress. It is regulated by the MAP2K Pek1, which is regulated by the MAP3K Mkh1. Length = 332

>gnl|CDD|173760 cd08220, STKc_Nek8, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

 Score = 41.8 bits (98), Expect = 2e-04
 Identities = 44/204 (21%), Positives = 72/204 (35%), Gaps = 61/204 (29%)

Query: 27  RYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNN 86
           +Y  +R +G G F  V+L +                                K V+I+  
Sbjct: 1   KYEKIRVVGRGAFGIVHLCR---------------------------RKADQKLVIIKQI 33

Query: 87  EQLEMVREE-------IRVSSLFSHRNLLP-----LLDHAIIAVKANQEGSWKHEAYLLF 134
              +M ++E        +V  L SH N++      L D A++ V     G          
Sbjct: 34  PVEQMTKDERLAAQNECQVLKLLSHPNIIEYYENFLEDKALMIVMEYAPG---------- 83

Query: 135 PVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILI 194
                GTL ++  + +          +L  F QI   L H+H+      H D+K  NIL+
Sbjct: 84  -----GTLAEY--IQKRCNSLLDEDTILHFFVQILLALHHVHTKL--ILHRDLKTQNILL 134

Query: 195 TCRKGQPPLAILMDFGSARPAQSK 218
              K    +  + DFG ++   SK
Sbjct: 135 DKHKM---VVKIGDFGISKILSSK 155

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with a rare form of juvenile renal cystic disease, nephronophthisis type 9. It has been suggested that a defect in the ciliary localization of Nek8 contributes to the development of cysts manifested by these diseases. Length = 256

>gnl|CDD|173673 cd05582, STKc_RSK_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 47/164 (28%), Positives = 72/164 (43%), Gaps = 33/164 (20%)

Query: 31  LRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLE 90
           L+ LG+G F  V+LV++    DA    G L               YAM KVL +   +  
Sbjct: 1   LKVLGQGSFGKVFLVRKITGPDA----GQL---------------YAM-KVLKKATLK-- 38

Query: 91  MVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQ 150
            VR+ +R       R++L  ++H  I VK +     + + YL+      G L        
Sbjct: 39  -VRDRVRTK---MERDILAEVNHPFI-VKLHYAFQTEGKLYLILDFLRGGDLFTRL---- 89

Query: 151 TKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILI 194
           +K+  F+  DV     ++   L H+HSL   Y   D+KP NIL+
Sbjct: 90  SKEVMFTEEDVKFYLAELALALDHLHSLGIIY--RDLKPENILL 131

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylates all known RSK substrates. RSKs act as downstream effectors of mitogen-activated protein kinase (MAPK) and play key roles in mitogen-activated cell growth, differentiation, and survival. Mammals possess four RSK isoforms (RSK1-4) from distinct genes. RSK proteins are also referred to as MAP kinase-activated protein kinases (MAPKAPKs), p90-RSKs, or p90S6Ks. Length = 318

>gnl|CDD|173746 cd07850, STKc_JNK, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 24/54 (44%), Positives = 31/54 (57%), Gaps = 6/54 (11%)

Query: 166 YQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF 219
           YQ+  G+KH+HS      H D+KP NI++   K    L IL DFG AR A + F
Sbjct: 125 YQMLCGIKHLHS--AGIIHRDLKPSNIVV---KSDCTLKIL-DFGLARTAGTSF 172

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3) that are alternatively spliced to produce at least 10 isoforms. JNKs are specifically activated by the MAPK kinases MKK4 and MKK7, which are in turn activated by upstream MAPK kinase kinases as a result of different stimuli including stresses such as ultraviolet (UV) irradiation, hyperosmolarity, heat shock, or cytokines. JNKs activate a large number of different substrates based on specific stimulus, cell type, and cellular condition, and may be implicated in seemingly contradictory functions. Length = 353

>gnl|CDD|173765 cd08225, STKc_Nek5, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

 Score = 41.1 bits (96), Expect = 2e-04
 Identities = 46/198 (23%), Positives = 82/198 (41%), Gaps = 39/198 (19%)

Query: 27  RYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNN 86
           RY I++++GEG F  +YL K    ++           +K+           + K+ ++  
Sbjct: 1   RYEIIKKIGEGSFGKIYLAKAKSDSEHCV--------IKEID---------LTKMPVKEK 43

Query: 87  EQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPV-HLDGTLLDH 145
           E     ++E+ + +   H N++                S++    L   + + DG  L  
Sbjct: 44  EA---SKKEVILLAKMKHPNIVTFFA------------SFQENGRLFIVMEYCDGGDL-M 87

Query: 146 AKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAI 205
            ++ + +   FS   +L  F QI  GLKH+H  +    H D+K  NI ++ + G   +A 
Sbjct: 88  KRINRQRGVLFSEDQILSWFVQISLGLKHIH--DRKILHRDIKSQNIFLS-KNGM--VAK 142

Query: 206 LMDFGSARPAQSKFALGQ 223
           L DFG AR       L  
Sbjct: 143 LGDFGIARQLNDSMELAY 160

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown. Length = 257

>gnl|CDD|173757 cd08217, STKc_Nek2, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

 Score = 40.7 bits (96), Expect = 3e-04
 Identities = 40/197 (20%), Positives = 71/197 (36%), Gaps = 49/197 (24%)

Query: 28  YRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKV--LIQN 85
           Y +L  +G+G F  V  V+                        SD      K++      
Sbjct: 2   YEVLETIGKGSFGTVRKVR----------------------RKSDGKILVWKEIDYGNMT 39

Query: 86  NEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPV--HLDGTLL 143
            ++ + +  E+ +     H N++   D   I  ++NQ          L+ V  + +G   
Sbjct: 40  EKEKQQLVSEVNILRELKHPNIVRYYDR--IIDRSNQ---------TLYIVMEYCEGG-- 86

Query: 144 DHAKVMQTKKE---FFSTSDVLQIFYQICAGLKHMHSLEPP---YAHNDVKPGNILITCR 197
           D A+++Q  K+   +     + +I  Q+   L   H+   P     H D+KP NI +   
Sbjct: 87  DLAQLIQKCKKERKYIEEEFIWRILTQLLLALYECHNRSDPGNTVLHRDLKPANIFLDAN 146

Query: 198 KGQPPLAILMDFGSARP 214
                   L DFG A+ 
Sbjct: 147 N----NVKLGDFGLAKI 159

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exit. NIMA is involved in nuclear membrane fission. Vertebrate Nek2 is a cell cycle-regulated STK, localized in centrosomes and kinetochores, that regulates centrosome splitting at the G2/M phase. It also interacts with other mitotic kinases such as Polo-like kinase 1 and may play a role in spindle checkpoint. An increase in the expression of the human NEK2 gene is strongly associated with the progression of non-Hodgkin lymphoma. Length = 265

>gnl|CDD|173731 cd06627, STKc_Cdc7_like, Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

 Score = 40.7 bits (96), Expect = 3e-04
 Identities = 52/190 (27%), Positives = 74/190 (38%), Gaps = 48/190 (25%)

Query: 27  RYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN- 85
            Y++   +G G F  VY               GL        +L      A+K++ ++  
Sbjct: 1   NYQLGDLIGRGAFGVVY--------------KGL--------NLETGDFVAIKQISLEKI 38

Query: 86  -NEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHL--DGTL 142
             E L+ + +EI         +LL  L H  I VK    GS +    L   +    +G+L
Sbjct: 39  KEEALKSIMQEI---------DLLKNLKHPNI-VK--YIGSIETSDSLYIILEYAENGSL 86

Query: 143 LDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPP 202
               K    K   F  S V    YQ+  GL ++H  E    H D+K  NIL T + G   
Sbjct: 87  RQIIK----KFGPFPESLVAVYVYQVLQGLAYLH--EQGVIHRDIKAANILTT-KDGVVK 139

Query: 203 LAILMDFGSA 212
           LA   DFG A
Sbjct: 140 LA---DFGVA 146

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Cdc7 is essential for cell division by playing a key role in the initiation of septum formation and cytokinesis. Budding yeast Cdc15 functions to coordinate mitotic exit with cytokinesis. Arabidopsis MAPKKK epsilon is required for pollen development in the plasma membrane. Length = 254

>gnl|CDD|173769 cd08229, STKc_Nek7, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

 Score = 40.8 bits (95), Expect = 4e-04
 Identities = 41/168 (24%), Positives = 69/168 (41%), Gaps = 31/168 (18%)

Query: 28  YRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNE 87
           +RI +++G G F+ VY                        + L D    A+KKV I    
Sbjct: 4   FRIEKKIGRGQFSEVYRA----------------------TCLLDGVPVALKKVQI---- 37

Query: 88  QLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAK 147
             +++  + R   +    +LL  L+H  + +K        +E  ++  +   G L    K
Sbjct: 38  -FDLMDAKARADCI-KEIDLLKQLNHPNV-IKYYASFIEDNELNIVLELADAGDLSRMIK 94

Query: 148 VMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILIT 195
             + +K       V + F Q+C+ L+HMHS      H D+KP N+ IT
Sbjct: 95  HFKKQKRLIPEKTVWKYFVQLCSALEHMHSRR--VMHRDIKPANVFIT 140

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase. Length = 267

>gnl|CDD|173742 cd07845, STKc_CDK10, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 51/191 (26%), Positives = 77/191 (40%), Gaps = 52/191 (27%)

Query: 31  LRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLE 90
           L ++GEG +  VY  ++T + +                        A+KKV      +++
Sbjct: 12  LNRIGEGTYGIVYRARDTTSGE----------------------IVALKKV------RMD 43

Query: 91  MVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLL------- 143
             R+ I +SSL     LL L    I+ +K    G            HLD   L       
Sbjct: 44  NERDGIPISSLREITLLLNLRHPNIVELKEVVVGK-----------HLDSIFLVMEYCEQ 92

Query: 144 DHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPL 203
           D A ++      FS S V  +  Q+  GL+++H  E    H D+K  N+L+T  KG   +
Sbjct: 93  DLASLLDNMPTPFSESQVKCLMLQLLRGLQYLH--ENFIIHRDLKVSNLLLT-DKGCLKI 149

Query: 204 AILMDFGSARP 214
           A   DFG AR 
Sbjct: 150 A---DFGLART 157

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing increases the transcription of c-RAF and the activation of the p42/p44 MAPK pathway, which leads to antiestrogen resistance. Patients who express low levels of CDK10 relapse early on tamoxifen. Length = 309

>gnl|CDD|173730 cd06624, STKc_ASK, Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

 Score = 40.6 bits (95), Expect = 4e-04
 Identities = 45/193 (23%), Positives = 86/193 (44%), Gaps = 46/193 (23%)

Query: 24  NENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLI 83
           +EN  R++  LG+G +  VY            A+  L+ +V            A+K++  
Sbjct: 8   DENGERVV--LGKGTYGIVY------------AARDLSTQV----------RIAIKEIPE 43

Query: 84  QNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAY-LLFPVHLDGTL 142
           +++  ++ + EEI + S   HRN++  L            GS     +  +F   + G  
Sbjct: 44  RDSRYVQPLHEEIALHSYLKHRNIVQYL------------GSDSENGFFKIFMEQVPGGS 91

Query: 143 LDHAKVMQTKKEFFSTSDVLQIFY--QICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQ 200
           L  + ++++K      ++   IFY  QI  GLK++H  +    H D+K  N+L+    G 
Sbjct: 92  L--SALLRSKWGPLKDNEQTIIFYTKQILEGLKYLHDNQ--IVHRDIKGDNVLVNTYSG- 146

Query: 201 PPLAILMDFGSAR 213
             +  + DFG+++
Sbjct: 147 --VVKISDFGTSK 157

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. It plays important roles in cytokine and stress responses, as well as in reactive oxygen species (ROS)-mediated cellular responses. ASK1 is implicated in various diseases mediated by oxidative stress including inschemic heart disease, hypertension, vessel injury, brain ischemia, Fanconi anemia, asthma, and pulmonary edema, among others. ASK2 (also called MAPKKK6) functions only in a heteromeric complex with ASK1, and can activate ASK1 by direct phosphorylation. The function of MAPKKK15 is still unknown. Length = 268

>gnl|CDD|173771 cd08529, STKc_FA2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

 Score = 40.2 bits (94), Expect = 4e-04
 Identities = 42/196 (21%), Positives = 74/196 (37%), Gaps = 42/196 (21%)

Query: 28  YRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNE 87
           + IL ++G+G F  V+ V                         +D   YAMK++ +    
Sbjct: 2   FEILNKIGKGSFGVVFKVVRK----------------------ADKRVYAMKQIDLSKMN 39

Query: 88  QLEMVREE-IRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHA 146
           + E  REE I  + + +       LD + I ++  +    K +  ++     +G L  H 
Sbjct: 40  RRE--REEAIDEARVLAK------LDSSYI-IRYYESFLDKGKLNIVMEYAENGDL--HK 88

Query: 147 KVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAIL 206
            +   +        V + F QI  GL H+HS +    H D+K  N+ +           +
Sbjct: 89  LLKMQRGRPLPEDQVWRFFIQILLGLAHLHSKK--ILHRDIKSLNLFLDAYDN----VKI 142

Query: 207 MDFGSAR--PAQSKFA 220
            D G A+     + FA
Sbjct: 143 GDLGVAKLLSDNTNFA 158

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cycle progression. No cellular function has yet been ascribed to CNK4. Length = 256

>gnl|CDD|173726 cd06610, STKc_OSR1_SPAK, Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

 Score = 40.4 bits (95), Expect = 4e-04
 Identities = 40/158 (25%), Positives = 70/158 (44%), Gaps = 27/158 (17%)

Query: 77  AMKKV-LIQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFP 135
           A+K++ L +    ++ +R+E++  S  +H N+          VK         E +L+ P
Sbjct: 30  AIKRIDLEKCQTSVDELRKEVQAMSQCNHPNV----------VKYYTSFVVGDELWLVMP 79

Query: 136 VHLDGTLLDHAKVMQTK--KEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNIL 193
               G+LLD   +M++   +     + +  +  ++  GL+++HS      H D+K GNIL
Sbjct: 80  YLSGGSLLD---IMKSSYPRGGLDEAIIATVLKEVLKGLEYLHSNG--QIHRDIKAGNIL 134

Query: 194 ITCRKGQPPLAILMDFG-SARPAQSKFALGQRRYSCRN 230
           +    G   +A   DFG SA  A      G R    R 
Sbjct: 135 L-GEDGSVKIA---DFGVSASLADG----GDRTRKVRK 164

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1 and SPAK contain a conserved C-terminal (CCT) domain, which recognizes a unique motif ([RK]FX[VI]) present in their activating kinases (WNK1/WNK4) and their substrates. Length = 267

>gnl|CDD|143363 cd07858, STKc_TEY_MAPK_plant, Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

 Score = 40.4 bits (95), Expect = 5e-04
 Identities = 35/127 (27%), Positives = 57/127 (44%), Gaps = 22/127 (17%)

Query: 95  EIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKE 154
           EI++     H N++ + D     +      ++  + Y+++ + +D  L    +  QT   
Sbjct: 54  EIKLLRHLDHENVIAIKD----IMPPPHREAFN-DVYIVYEL-MDTDLHQIIRSSQT--- 104

Query: 155 FFSTSDVLQIF-YQICAGLKHMHSLEPPYAHNDVKPGNILIT--CRKGQPPLAILMDFGS 211
              + D  Q F YQ+  GLK++HS      H D+KP N+L+   C      L I  DFG 
Sbjct: 105 --LSDDHCQYFLYQLLRGLKYIHSAN--VLHRDLKPSNLLLNANCD-----LKIC-DFGL 154

Query: 212 ARPAQSK 218
           AR    K
Sbjct: 155 ARTTSEK 161

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activation loop, TEY and TDY. This subfamily represents the TEY subtype and is further subdivided into three groups (A, B, and C). Group A is represented by AtMPK3, AtMPK6, Nicotiana tabacum BTF4 (NtNTF4), among others. They are mostly involved in environmental and hormonal responses. AtMPK3 and AtMPK6 are also key regulators for stomatal development and patterning. Group B is represented by AtMPK4, AtMPK13, and NtNTF6, among others. They may be involved in both cell division and environmental stress response. AtMPK4 also participates in regulating innate immunity. Group C is represented by AtMPK1, AtMPK2, NtNTF3, Oryza sativa MAPK4 (OsMAPK4), among others. They may also be involved in stress responses. AtMPK1 and AtMPK2 are activated following mechanical injury and in the presence of stress chemicals such as jasmonic acid, hydrogen peroxide and abscisic acid. OsMAPK4 is also called OsMSRMK3 for Multiple Stress-Responsive MAPK3. Length = 337

>gnl|CDD|173743 cd07846, STKc_CDKL2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

 Score = 40.5 bits (95), Expect = 5e-04
 Identities = 43/141 (30%), Positives = 67/141 (47%), Gaps = 26/141 (18%)

Query: 77  AMKKVLIQNNEQLEMVRE----EIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYL 132
           A+KK L   +E  +MV++    EIR+     H NL+ L++   +  +       K   YL
Sbjct: 30  AIKKFL--ESEDDKMVKKIAMREIRMLKQLRHENLVNLIE---VFRR-------KKRLYL 77

Query: 133 LFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNI 192
           +F   +D T+LD    ++        S V +  +QI  G++  HS      H D+KP NI
Sbjct: 78  VFE-FVDHTVLDD---LEKYPNGLDESRVRKYLFQILRGIEFCHSHN--IIHRDIKPENI 131

Query: 193 LITCRKGQPPLAILMDFGSAR 213
           L++    Q  +  L DFG AR
Sbjct: 132 LVS----QSGVVKLCDFGFAR 148

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKIAMRE (NKIATRE in rat), by translocation is associated with mild mental retardation. It has been reported that CDKL3 is lost in leukemic cells having a chromosome arm 5q deletion, and may contribute to the transformed phenotype. Length = 286

>gnl|CDD|132954 cd06623, PKc_MAPKK_plant_like, Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

 Score = 40.3 bits (95), Expect = 5e-04
 Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 9/71 (12%)

Query: 140 GTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKG 199
           G+L D  K    K        +  I  QI  GL ++H+ +    H D+KP N+LI   KG
Sbjct: 84  GSLADLLK----KVGKIPEPVLAYIARQILKGLDYLHT-KRHIIHRDIKPSNLLIN-SKG 137

Query: 200 QPPLAILMDFG 210
           +  +A   DFG
Sbjct: 138 EVKIA---DFG 145

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include MAPKKs from plants, kinetoplastids, alveolates, and mycetozoa. The MAPKK, LmxPK4, from Leishmania mexicana, is important in differentiation and virulence. Dictyostelium discoideum MEK1 is required for proper chemotaxis. MEK1 null mutants display severe defects in cell polarization and directional movement. Plants contain multiple MAPKKs like other eukaryotes. The Arabidopsis genome encodes for 10 MAPKKs while poplar and rice contain 13 MAPKKs each. The functions of these proteins have not been fully elucidated. There is evidence to suggest that MAPK cascades are involved in plant stress responses. In Arabidopsis, MKK3 plays a role in pathogen signaling, MKK2 is involved in cold and salt stress signaling, MKK4/MKK5 participates in innate immunity, and MKK7 regulates basal and systemic acquired resistance. Length = 264

>gnl|CDD|143342 cd07837, STKc_CdkB_plant, Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

 Score = 39.8 bits (93), Expect = 8e-04
 Identities = 51/195 (26%), Positives = 77/195 (39%), Gaps = 47/195 (24%)

Query: 28  YRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNE 87
           Y  L ++GEG +  VY  ++  T       G L                A+KK       
Sbjct: 3   YEKLEKIGEGTYGKVYKARDKNT-------GKLV---------------ALKKTR----- 35

Query: 88  QLEMVREEIRVSSLFSHRNLLPLLDHAI-----IAVKANQEGSWKHEAYLLFPVHLDGTL 142
            LEM  E I  ++L    +LL +L  +I     + V+  +E + K   YL+F  +LD   
Sbjct: 36  -LEMDEEGIPPTAL-REISLLQMLSESIYIVRLLDVEHVEEKNGKPSLYLVFE-YLDS-- 90

Query: 143 LDHAKVMQTKKEFFS----TSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRK 198
            D  K M +             +    YQ+  G+ H H       H D+KP N+L+  +K
Sbjct: 91  -DLKKFMDSNGRGPGRPLPAKTIKSFMYQLLKGVAHCHKHG--VMHRDLKPQNLLVDKQK 147

Query: 199 GQPPLAILMDFGSAR 213
           G   +A   D G  R
Sbjct: 148 GLLKIA---DLGLGR 159

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developmental pathways, such as stomata and leaf development. CdkB has been shown to associate with both cyclin B, which controls G2/M transition, and cyclin D, which acts as a mediator in linking extracellular signals to the cell cycle. Length = 295

>gnl|CDD|173670 cd05579, STKc_MAST_like, Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

 Score = 39.5 bits (93), Expect = 8e-04
 Identities = 37/179 (20%), Positives = 64/179 (35%), Gaps = 49/179 (27%)

Query: 37  GGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEI 96
           G +  V+L K+  T D                       YA+K +   +      +  + 
Sbjct: 4   GAYGRVFLAKKKSTGD----------------------IYAIKVIKKAD------MIRKN 35

Query: 97  RVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPV-HLDG----TLLDHAKVMQT 151
           +V  + + R++L       + VK     S++ +  L   + +L G    +LL++      
Sbjct: 36  QVDQVLTERDILSQAQSPYV-VKLYY--SFQGKKNLYLVMEYLPGGDLASLLENVGS--- 89

Query: 152 KKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFG 210
                          +I   L+++HS      H D+KP NILI    G   L    DFG
Sbjct: 90  ----LDEDVARIYIAEIVLALEYLHSNG--IIHRDLKPDNILID-SNGHLKLT---DFG 138

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert relative to other kinases. The fungal kinases in this subfamily harbor other domains in addition to a central catalytic domain, which also contains an insert relative to MAST kinases like MASTL. Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. MAST kinases are cytoskeletal associated kinases of unknown function that are also expressed at neuromuscular junctions and postsynaptic densities. The fungal proteins Rim15 and cek1 are involved in the regulation of meiosis and mitosis, respectively. Length = 265

>gnl|CDD|132963 cd06632, STKc_MEKK1_plant, Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

 Score = 39.7 bits (93), Expect = 8e-04
 Identities = 52/197 (26%), Positives = 82/197 (41%), Gaps = 57/197 (28%)

Query: 27  RYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTY-AMKKVLIQN 85
           R+R    LG G F  VY               GL           DDG + A+K+V + +
Sbjct: 1   RWRKGELLGSGSFGSVYE--------------GLNL---------DDGDFFAVKEVSLAD 37

Query: 86  NEQL--EMVRE---EIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEA--YLLFPVHL 138
           + Q   E V++   EI + S   H N++  L            G+ + E   Y+   +  
Sbjct: 38  DGQTGQEAVKQLEQEIALLSKLQHPNIVQYL------------GTEREEDNLYIFLELVP 85

Query: 139 DGTLLDHAKVMQTKKEFFSTSDVLQIFY--QICAGLKHMHSLEPPYAHNDVKPGNILITC 196
            G+L   AK+++   ++ S  + +   Y  QI  GL+++H       H D+K  NIL+  
Sbjct: 86  GGSL---AKLLK---KYGSFPEPVIRLYTRQILLGLEYLHDRN--TVHRDIKGANILVD- 136

Query: 197 RKGQPPLAILMDFGSAR 213
             G   LA   DFG A+
Sbjct: 137 TNGVVKLA---DFGMAK 150

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidopsis thaliana MEKK1 activates MPK4, a MAPK that regulates systemic acquired resistance. MEKK1 also participates in the regulation of temperature-sensitive and tissue-specific cell death. Length = 258

>gnl|CDD|173747 cd07852, STKc_MAPK15, Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

 Score = 39.5 bits (93), Expect = 0.001
 Identities = 23/53 (43%), Positives = 28/53 (52%), Gaps = 12/53 (22%)

Query: 164 IFYQICAGLKHMHSLEPPYAHNDVKPGNILIT--CR-KGQPPLAILMDFGSAR 213
           I YQ+   LK++HS      H D+KP NIL+   CR K       L DFG AR
Sbjct: 112 IMYQLLKALKYIHSGN--VIHRDLKPSNILLNSDCRVK-------LADFGLAR 155

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimuli whereas ERK8 shows low basal activity and is activated by DNA-damaging agents. ERK7 and ERK8 also have different substrate profiles. Genome analysis shows that they are orthologs with similar gene structures. ERK7 and ERK 8 may be involved in the signaling of some nuclear receptor transcription factors. ERK7 regulates hormone-dependent degradation of estrogen receptor alpha while ERK8 down-regulates the transcriptional co-activation androgen and glucocorticoid receptors. Length = 337

>gnl|CDD|173703 cd05612, STKc_PRKX_like, Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

 Score = 39.3 bits (92), Expect = 0.001
 Identities = 43/190 (22%), Positives = 77/190 (40%), Gaps = 47/190 (24%)

Query: 28  YRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNE 87
              ++ +G G F  V+LV++ ++                      +  YA+K + I   E
Sbjct: 3   LERIKTVGTGTFGRVHLVRDRIS----------------------EHYYALKVMAIP--E 38

Query: 88  QLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEA--YLLFPVHLDGTLLDH 145
            + + +E+     + + + +L  + H  I        +   +   Y+L      G L  +
Sbjct: 39  VIRLKQEQ----HVHNEKRVLKEVSHPFI---IRLFWTEHDQRFLYMLMEYVPGGELFSY 91

Query: 146 AKVMQTKKEFFSTSDVLQIFY--QICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPL 203
            +        FS S  L  FY  +I   L+++HS E  Y   D+KP NIL+  ++G   L
Sbjct: 92  LRNSGR----FSNSTGL--FYASEIVCALEYLHSKEIVY--RDLKPENILLD-KEGHIKL 142

Query: 204 AILMDFGSAR 213
               DFG A+
Sbjct: 143 T---DFGFAK 149

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyte/macrophage lineage differentiation, renal cell epithelial migration, and tubular morphogenesis in the developing kidney. Length = 291

>gnl|CDD|132957 cd06626, STKc_MEKK4, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

 Score = 38.9 bits (91), Expect = 0.001
 Identities = 44/197 (22%), Positives = 79/197 (40%), Gaps = 62/197 (31%)

Query: 27  RYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNN 86
           R++   ++G G F  VY     V  D    +G L                A+K++ IQ+N
Sbjct: 1   RWQRGNKIGGGTFGKVYTA---VNLD----TGEL---------------MAVKEIRIQDN 38

Query: 87  EQ--LEMVREEIRVSSLFSHRNLLPLL------DHAIIAVKANQEGSWKHEAYLLFPVHL 138
           +   ++ + +E++V  L  H NL+         +   I ++    G+            L
Sbjct: 39  DPKTIKEIADEMKVLELLKHPNLVKYYGVEVHREKVYIFMEYCSGGT------------L 86

Query: 139 DGTLLDHAKVMQTKKEFFSTSDVLQIF-YQICAGLK--HMHSLEPPYAHNDVKPGNILIT 195
           +  LL+H +++           V++++  Q+  GL   H H +     H D+KP NI + 
Sbjct: 87  EE-LLEHGRILDEH--------VIRVYTLQLLEGLAYLHSHGIV----HRDIKPANIFLD 133

Query: 196 CRKGQPPLAILMDFGSA 212
                  +  L DFG A
Sbjct: 134 HNG----VIKLGDFGCA 146

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. MEKK4 also plays roles in the re-polarization of the actin cytoskeleton in response to osmotic stress, in the proper closure of the neural tube, in cardiovascular development, and in immune responses. Length = 264

>gnl|CDD|143382 cd07877, STKc_p38alpha_MAPK14, Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

 Score = 39.3 bits (91), Expect = 0.001
 Identities = 51/173 (29%), Positives = 85/173 (49%), Gaps = 28/173 (16%)

Query: 95  EIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKE 154
           E+R+     H N++ LLD      ++ +E +   + YL+   HL G  L++  +++ +K 
Sbjct: 66  ELRLLKHMKHENVIGLLD-VFTPARSLEEFN---DVYLV--THLMGADLNN--IVKCQK- 116

Query: 155 FFSTSDVLQ-IFYQICAGLKHMHSLEPPYAHNDVKPGNILIT--CRKGQPPLAILMDFGS 211
              T D +Q + YQI  GLK++HS +    H D+KP N+ +   C      L IL DFG 
Sbjct: 117 --LTDDHVQFLIYQILRGLKYIHSAD--IIHRDLKPSNLAVNEDCE-----LKIL-DFGL 166

Query: 212 ARPAQSKFA--LGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMFGR 262
           AR    +    +  R Y     +L+  +H ++ +   +V  I   M EL+ GR
Sbjct: 167 ARHTDDEMTGYVATRWYRAPEIMLNW-MHYNQTVDIWSVGCI---MAELLTGR 215

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14, is expressed in most tissues and is the major isoform involved in the immune and inflammatory response. It is the central p38 MAPK involved in myogenesis. It plays a role in regulating cell cycle check-point transition and promoting cell differentiation. p38alpha also regulates cell proliferation and death through crosstalk with the JNK pathway. Its substrates include MAPK activated protein kinase 2 (MK2), MK5, and the transcription factors ATF2 and Mitf. Length = 345

>gnl|CDD|173675 cd05584, STKc_p70S6K, Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

 Score = 39.0 bits (91), Expect = 0.002
 Identities = 48/184 (26%), Positives = 74/184 (40%), Gaps = 43/184 (23%)

Query: 31  LRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLE 90
           L+ LG+GG+  V+ V++    D                       +AM KVL    ++  
Sbjct: 1   LKVLGKGGYGKVFQVRKVTGADTGK-------------------IFAM-KVL----KKAT 36

Query: 91  MVREEIRVSSLFSHRNLLPLLDHAIIA--VKANQEGSWKHEAYLLFPVHLDGTLLDHAKV 148
           +VR +   +   + RN+L  + H  I   + A Q G    + YL+      G L      
Sbjct: 37  IVRNQKDTAHTKAERNILEAVKHPFIVDLIYAFQTGG---KLYLILEYLSGGELF----- 88

Query: 149 MQTKKEFFSTSDVLQIFY--QICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAIL 206
           M  ++E     D    FY  +I   L+H+H     Y   D+KP NIL+   +G      L
Sbjct: 89  MHLEREGIFMEDT-ACFYLSEISLALEHLHQQGIIY--RDLKPENILLDA-QGH---VKL 141

Query: 207 MDFG 210
            DFG
Sbjct: 142 TDFG 145

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the insulin receptor substrate IRS-1, among others. Mammals contain two isoforms of p70S6K, named S6K1 and S6K2 (or S6K-beta). Length = 323

>gnl|CDD|240159 cd05120, APH_ChoK_like, Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family

 Score = 37.8 bits (88), Expect = 0.002
 Identities = 40/161 (24%), Positives = 62/161 (38%), Gaps = 34/161 (21%)

Query: 57  SGGLANKVKDPSHLSD-DGTYAMKKVLIQNNEQLEMVREEIRVSSLFSHRNLL-PLLDHA 114
            GGL N+V     L   D  Y +K  +  + E+      E+ +  L + + L  P     
Sbjct: 7   KGGLTNRV---YLLGTKDEDYVLK--INPSREKGADREREVAILQLLARKGLPVP----K 57

Query: 115 IIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKH 174
           ++A   +   S+     LL    ++G  LD            S  +   I  Q+   L  
Sbjct: 58  VLASGESDGWSY-----LLME-WIEGETLDEV----------SEEEKEDIAEQLAELLAK 101

Query: 175 MHSLEPPYA--HNDVKPGNILITCRKGQPPLAILMDFGSAR 213
           +H L P     H D+ PGNIL+   K    L I+ D+  A 
Sbjct: 102 LHQL-PLLVLCHGDLHPGNILVDDGKI---LGII-DWEYAG 137

The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves as precursors to the synthesis of important biological compounds, such as the major phospholipids, phosphatidylcholine and phosphatidylethanolamine and the amino acids, threonine, methionine, and isoleucine. Length = 155

>gnl|CDD|132964 cd06633, STKc_TAO3, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

 Score = 38.9 bits (90), Expect = 0.002
 Identities = 48/192 (25%), Positives = 80/192 (41%), Gaps = 46/192 (23%)

Query: 31  LRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLE 90
           L ++G G F  VY    + T +  A        VK  S       Y+ K    Q NE+ +
Sbjct: 26  LHEIGHGSFGAVYFATNSHTNEVVA--------VKKMS-------YSGK----QTNEKWQ 66

Query: 91  MVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSW--KHEAYLLFPVHLDGTLLDHAKV 148
            + +E++      H N +              +G +  +H A+L+    ++  L   + +
Sbjct: 67  DIIKEVKFLQQLKHPNTI------------EYKGCYLKEHTAWLV----MEYCLGSASDL 110

Query: 149 MQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMD 208
           ++  K+     ++  I +    GL ++HS      H D+K GNIL+T    +P    L D
Sbjct: 111 LEVHKKPLQEVEIAAITHGALQGLAYLHS--HNMIHRDIKAGNILLT----EPGQVKLAD 164

Query: 209 FGSA---RPAQS 217
           FGSA    PA S
Sbjct: 165 FGSASKSSPANS 176

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a component of the RAM (regulation of Ace2p activity and cellular morphogenesis) signaling pathway. TAO3 is upregulated in retinal ganglion cells after axotomy, and may play a role in apoptosis. Length = 313

>gnl|CDD|173744 cd07847, STKc_CDKL1_4, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

 Score = 38.5 bits (90), Expect = 0.002
 Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 6/53 (11%)

Query: 161 VLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSAR 213
           + +I +Q    +   H       H DVKP NILIT ++GQ  L    DFG AR
Sbjct: 102 IKKIIWQTLQAVNFCHKHN--CIHRDVKPENILIT-KQGQIKLC---DFGFAR 148

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The function of CDKL4 is unknown. Length = 286

>gnl|CDD|132961 cd06630, STKc_MEKK1, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

 Score = 38.3 bits (89), Expect = 0.002
 Identities = 36/143 (25%), Positives = 66/143 (46%), Gaps = 27/143 (18%)

Query: 77  AMKKVLIQNN------EQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEA 130
           A+K+V    N      E +E +R+EIR+ +  +H +++ +L            G+   ++
Sbjct: 29  AVKQVTYVRNTSSEQEEVVEALRKEIRLMARLNHPHIIRML------------GATCEDS 76

Query: 131 -YLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKP 189
            + LF   + G  + H   + +K   F  + ++    Q+  GL ++H  E    H DVK 
Sbjct: 77  HFNLFVEWMAGGSVSH---LLSKYGAFKEAVIINYTEQLLRGLSYLH--ENQIIHRDVKG 131

Query: 190 GNILITCRKGQPPLAILMDFGSA 212
            N+LI     +  +A   DFG+A
Sbjct: 132 ANLLIDSTGQRLRIA---DFGAA 151

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their respective MAPKKs, MEK1/2 and MKK4/MKK7, respectively. MEKK1 is important in regulating cell survival and apoptosis. MEKK1 also plays a role in cell migration, tissue maintenance and homeostasis, and wound healing. Length = 268

>gnl|CDD|143344 cd07839, STKc_CDK5, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

 Score = 38.2 bits (89), Expect = 0.003
 Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 17/85 (20%)

Query: 150 QTKKEFFST------SDVLQIF-YQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPP 202
           Q  K++F +       ++++ F +Q+  GL   HS      H D+KP N+LI  + G+  
Sbjct: 83  QDLKKYFDSCNGDIDPEIVKSFMFQLLKGLAFCHSHN--VLHRDLKPQNLLIN-KNGELK 139

Query: 203 LAILMDFGSARPAQSKFALGQRRYS 227
           LA   DFG AR     F +  R YS
Sbjct: 140 LA---DFGLARA----FGIPVRCYS 157

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also important in synaptic plasticity and learning. CDK5 also participates in protecting against cell death and promoting angiogenesis. Impaired CDK5 activity is implicated in Alzheimer's disease, amyotrophic lateral sclerosis, Parkinson's disease, Huntington's disease and acute neuronal injury. Length = 284

>gnl|CDD|173723 cd06605, PKc_MAPKK, Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

 Score = 37.7 bits (88), Expect = 0.003
 Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 7/74 (9%)

Query: 137 HLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITC 196
           ++DG  LD  K+++  +       + +I   +  GL ++H  +    H DVKP NIL+  
Sbjct: 80  YMDGGSLD--KILKEVQGRIPERILGKIAVAVLKGLTYLHE-KHKIIHRDVKPSNILVN- 135

Query: 197 RKGQPPLAILMDFG 210
            +GQ  L    DFG
Sbjct: 136 SRGQIKLC---DFG 146

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity PKs that phosphorylate their downstream targets, MAPKs, at specific threonine and tyrosine residues. There are three MAPK subfamilies: extracellular signal-regulated kinase (ERK), c-Jun N-terminal kinase (JNK), and p38. In mammalian cells, there are seven MAPKKs (named MKK1-7) and 20 MAPKKKs. Each MAPK subfamily can be activated by at least two cognate MAPKKs and by multiple MAPKKKs. Length = 265

>gnl|CDD|143383 cd07878, STKc_p38beta_MAPK11, Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

 Score = 37.7 bits (87), Expect = 0.004
 Identities = 66/248 (26%), Positives = 102/248 (41%), Gaps = 50/248 (20%)

Query: 21  VWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKK 80
           VW    RY+ L  +G G +  V           SA    L  KV            A+KK
Sbjct: 10  VWEVPERYQNLTPVGSGAYGSV----------CSAYDTRLRQKV------------AVKK 47

Query: 81  VL--IQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHL 138
           +    Q+         E+R+     H N++ LLD  +     + E    +E YL+   +L
Sbjct: 48  LSRPFQSLIHARRTYRELRLLKHMKHENVIGLLD--VFTPATSIENF--NEVYLV--TNL 101

Query: 139 DGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILIT--C 196
            G  L++      K +  S   V  + YQ+  GLK++HS      H D+KP N+ +   C
Sbjct: 102 MGADLNNI----VKCQKLSDEHVQFLIYQLLRGLKYIHS--AGIIHRDLKPSNVAVNEDC 155

Query: 197 RKGQPPLAILMDFGSARPAQSKFA--LGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQIL 254
                 L IL DFG AR A  +    +  R Y     +L+  +H ++ +   +V  I   
Sbjct: 156 E-----LRIL-DFGLARQADDEMTGYVATRWYRAPEIMLNW-MHYNQTVDIWSVGCI--- 205

Query: 255 MRELMFGR 262
           M EL+ G+
Sbjct: 206 MAELLKGK 213

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is widely expressed in tissues and shows more similarity with p38alpha than with the other isoforms. Both are sensitive to pyridinylimidazoles and share some common substrates such as MAPK activated protein kinase 2 (MK2) and the transcription factors ATF2, c-Fos and, ELK-1. p38beta is involved in regulating the activation of the cyclooxygenase-2 promoter and the expression of TGFbeta-induced alpha-smooth muscle cell actin. Length = 343

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	262
KOG0595	429	consensus Serine/threonine-protein kinase involved	100.0
KOG0598	357	consensus Ribosomal protein S6 kinase and related	100.0
KOG0591	375	consensus NIMA (never in mitosis)-related G2-speci	100.0
KOG0575	592	consensus Polo-like serine/threonine protein kinas	100.0
KOG0615	475	consensus Serine/threonine protein kinase Chk2 and	100.0
KOG2345	302	consensus Serine/threonine protein kinase/TGF-beta	100.0
KOG0581	364	consensus Mitogen-activated protein kinase kinase	100.0
KOG0593	396	consensus Predicted protein kinase KKIAMRE [Genera	100.0
KOG0616	355	consensus cAMP-dependent protein kinase catalytic	100.0
KOG0661	538	consensus MAPK related serine/threonine protein ki	100.0
KOG0600	560	consensus Cdc2-related protein kinase [Cell cycle	100.0
KOG0583	370	consensus Serine/threonine protein kinase [Signal	100.0
KOG0659	318	consensus Cdk activating kinase (CAK)/RNA polymera	100.0
KOG0198	313	consensus MEKK and related serine/threonine protei	100.0
KOG0605	550	consensus NDR and related serine/threonine kinases	100.0
KOG0592	604	consensus 3-phosphoinositide-dependent protein kin	100.0
KOG1187	361	consensus Serine/threonine protein kinase [Signal	100.0
KOG0663	419	consensus Protein kinase PITSLRE and related kinas	100.0
KOG0597	808	consensus Serine-threonine protein kinase FUSED [G	100.0
KOG0192	362	consensus Tyrosine kinase specific for activated (	100.0
KOG0611	668	consensus Predicted serine/threonine protein kinas	100.0
KOG0197	468	consensus Tyrosine kinases [Signal transduction me	100.0
KOG1989	738	consensus ARK protein kinase family [Signal transd	100.0
cd05628	363	STKc_NDR1 Catalytic domain of the Protein Serine/T	100.0
KOG0588	786	consensus Serine/threonine protein kinase [Cell cy	100.0
cd05612	291	STKc_PRKX_like Catalytic domain of PRKX-like Prote	100.0
KOG0582	516	consensus Ste20-like serine/threonine protein kina	100.0
KOG0578	550	consensus p21-activated serine/threonine protein k	100.0
PTZ00263	329	protein kinase A catalytic subunit; Provisional	100.0
KOG0660	359	consensus Mitogen-activated protein kinase [Signal	100.0
cd05629	377	STKc_NDR_like_fungal Catalytic domain of Fungal Nu	100.0
KOG0585	576	consensus Ca2+/calmodulin-dependent protein kinase	100.0
cd05598	376	STKc_LATS Catalytic domain of the Protein Serine/T	100.0
cd05599	364	STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel	100.0
cd05600	333	STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p-	100.0
KOG0694	694	consensus Serine/threonine protein kinase [Signal	100.0
PTZ00426	340	cAMP-dependent protein kinase catalytic subunit; P	100.0
cd05626	381	STKc_LATS2 Catalytic domain of the Protein Serine/	100.0
cd05625	382	STKc_LATS1 Catalytic domain of the Protein Serine/	100.0
cd05573	350	STKc_ROCK_NDR_like Catalytic domain of ROCK- and N	100.0
cd05621	370	STKc_ROCK2 Catalytic domain of the Protein Serine/	100.0
cd05624	331	STKc_MRCK_beta Catalytic domain of the Protein Ser	100.0
cd05627	360	STKc_NDR2 Catalytic domain of the Protein Serine/T	100.0
cd05622	371	STKc_ROCK1 Catalytic domain of the Protein Serine/	100.0
KOG0658	364	consensus Glycogen synthase kinase-3 [Carbohydrate	100.0
cd05597	331	STKc_DMPK_like Catalytic domain of Myotonic Dystro	100.0
cd05601	330	STKc_CRIK Catalytic domain of the Protein Serine/T	100.0
KOG0580	281	consensus Serine/threonine protein kinase [Cell cy	100.0
cd05571	323	STKc_PKB Catalytic domain of the Protein Serine/Th	100.0
cd05596	370	STKc_ROCK Catalytic domain of the Protein Serine/T	100.0
cd05614	332	STKc_MSK2_N N-terminal catalytic domain of the Pro	100.0
KOG0594	323	consensus Protein kinase PCTAIRE and related kinas	100.0
PTZ00267	478	NIMA-related protein kinase; Provisional	100.0
KOG0666	438	consensus Cyclin C-dependent kinase CDK8 [Transcri	100.0
cd05623	332	STKc_MRCK_alpha Catalytic domain of the Protein Se	100.0
KOG0584	632	consensus Serine/threonine protein kinase [General	100.0
cd07848	287	STKc_CDKL5 Catalytic domain of the Serine/Threonin	99.98
cd05631	285	STKc_GRK4 Catalytic domain of the Protein Serine/T	99.98
KOG0667	586	consensus Dual-specificity tyrosine-phosphorylatio	99.98
cd07859	338	STKc_TDY_MAPK_plant Catalytic domain of the Serine	99.98
cd06649	331	PKc_MEK2 Catalytic domain of the dual-specificity	99.98
cd07871	288	STKc_PCTAIRE3 Catalytic domain of the Serine/Threo	99.98
cd05584	323	STKc_p70S6K Catalytic domain of the Protein Serine	99.98
KOG4250	732	consensus TANK binding protein kinase TBK1 [Signal	99.98
cd05595	323	STKc_PKB_beta Catalytic domain of the Protein Seri	99.98
cd05593	328	STKc_PKB_gamma Catalytic domain of the Protein Ser	99.98
KOG0032	382	consensus Ca2+/calmodulin-dependent protein kinase	99.98
cd05102	338	PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi	99.98
cd05582	318	STKc_RSK_N N-terminal catalytic domain of the Prot	99.98
cd05585	312	STKc_YPK1_like Catalytic domain of Yeast Protein K	99.98
cd07869	303	STKc_PFTAIRE1 Catalytic domain of the Serine/Threo	99.98
KOG0610	459	consensus Putative serine/threonine protein kinase	99.98
KOG0589	426	consensus Serine/threonine protein kinase [General	99.98
KOG0193	678	consensus Serine/threonine protein kinase RAF [Sig	99.98
cd05096	304	PTKc_DDR1 Catalytic domain of the Protein Tyrosine	99.97
PHA03212	391	serine/threonine kinase US3; Provisional	99.97
PLN00034	353	mitogen-activated protein kinase kinase; Provision	99.97
cd05587	324	STKc_cPKC Catalytic domain of the Protein Serine/T	99.97
PTZ00266	1021	NIMA-related protein kinase; Provisional	99.97
PTZ00036	440	glycogen synthase kinase; Provisional	99.97
KOG0033	355	consensus Ca2+/calmodulin-dependent protein kinase	99.97
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	99.97
cd05594	325	STKc_PKB_alpha Catalytic domain of the Protein Ser	99.97
KOG0586	596	consensus Serine/threonine protein kinase [General	99.97
PTZ00283	496	serine/threonine protein kinase; Provisional	99.97
cd06650	333	PKc_MEK1 Catalytic domain of the dual-specificity	99.97
cd05615	323	STKc_cPKC_alpha Catalytic domain of the Protein Se	99.97
cd07853	372	STKc_NLK Catalytic domain of the Serine/Threonine	99.97
cd05603	321	STKc_SGK2 Catalytic domain of the Protein Serine/T	99.97
cd05604	325	STKc_SGK3 Catalytic domain of the Protein Serine/T	99.97
cd05589	324	STKc_PKN Catalytic domain of the Protein Serine/Th	99.97
cd05616	323	STKc_cPKC_beta Catalytic domain of the Protein Ser	99.97
cd05605	285	STKc_GRK4_like Catalytic domain of G protein-coupl	99.97
cd05108	316	PTKc_EGFR Catalytic domain of the Protein Tyrosine	99.97
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	99.97
cd05592	316	STKc_nPKC_theta_delta Catalytic domain of the Prot	99.97
cd05608	280	STKc_GRK1 Catalytic domain of the Protein Serine/T	99.97
cd05617	327	STKc_aPKC_zeta Catalytic domain of the Protein Ser	99.97
cd06644	292	STKc_STK10_LOK Catalytic domain of the Protein Ser	99.97
cd05618	329	STKc_aPKC_iota Catalytic domain of the Protein Ser	99.97
cd05588	329	STKc_aPKC Catalytic domain of the Protein Serine/T	99.97
KOG0194	474	consensus Protein tyrosine kinase [Signal transduc	99.97
cd05064	266	PTKc_EphR_A10 Catalytic domain of the Protein Tyro	99.97
cd07872	309	STKc_PCTAIRE2 Catalytic domain of the Serine/Threo	99.97
cd07878	343	STKc_p38beta_MAPK11 Catalytic domain of the Serine	99.97
cd05575	323	STKc_SGK Catalytic domain of the Protein Serine/Th	99.97
cd05591	321	STKc_nPKC_epsilon Catalytic domain of the Protein	99.97
cd08228	267	STKc_Nek6 Catalytic domain of the Protein Serine/T	99.97
cd05106	374	PTKc_CSF-1R Catalytic domain of the Protein Tyrosi	99.97
cd05586	330	STKc_Sck1_like Catalytic domain of Suppressor of l	99.97
KOG0607	463	consensus MAP kinase-interacting kinase and relate	99.97
cd07876	359	STKc_JNK2 Catalytic domain of the Serine/Threonine	99.97
cd05602	325	STKc_SGK1 Catalytic domain of the Protein Serine/T	99.97
cd05054	337	PTKc_VEGFR Catalytic domain of the Protein Tyrosin	99.97
cd05620	316	STKc_nPKC_delta Catalytic domain of the Protein Se	99.97
cd06646	267	STKc_MAP4K5 Catalytic domain of the Protein Serine	99.97
KOG0201	467	consensus Serine/threonine protein kinase [Signal	99.97
cd05619	316	STKc_nPKC_theta Catalytic domain of the Protein Se	99.97
cd06625	263	STKc_MEKK3_like Catalytic domain of MAP/ERK kinase	99.97
cd05590	320	STKc_nPKC_eta Catalytic domain of the Protein Seri	99.97
cd07862	290	STKc_CDK6 Catalytic domain of the Serine/Threonine	99.97
KOG4279	1226	consensus Serine/threonine protein kinase [Signal	99.97
cd07875	364	STKc_JNK1 Catalytic domain of the Serine/Threonine	99.97
cd07868	317	STKc_CDK8 Catalytic domain of the Serine/Threonine	99.97
cd05580	290	STKc_PKA Catalytic domain of the Protein Serine/Th	99.97
cd05033	266	PTKc_EphR Catalytic domain of Ephrin Receptor Prot	99.97
PHA03207	392	serine/threonine kinase US3; Provisional	99.97
cd06611	280	STKc_SLK_like Catalytic domain of Ste20-like kinas	99.97
KOG0574	502	consensus STE20-like serine/threonine kinase MST [	99.97
cd05607	277	STKc_GRK7 Catalytic domain of the Protein Serine/T	99.97
PTZ00284	467	protein kinase; Provisional	99.97
KOG1026	774	consensus Nerve growth factor receptor TRKA and re	99.97
PF00069	260	Pkinase: Protein kinase domain Protein kinase; unc	99.97
cd06615	308	PKc_MEK Catalytic domain of the dual-specificity P	99.97
cd05109	279	PTKc_HER2 Catalytic domain of the Protein Tyrosine	99.97
cd05111	279	PTK_HER3 Pseudokinase domain of the Protein Tyrosi	99.97
cd05578	258	STKc_Yank1 Catalytic domain of the Protein Serine/	99.97
cd06613	262	STKc_MAP4K3_like Catalytic domain of Mitogen-activ	99.97
cd08224	267	STKc_Nek6_Nek7 Catalytic domain of the Protein Ser	99.97
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	99.97
cd06622	286	PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS	99.97
cd07874	355	STKc_JNK3 Catalytic domain of the Serine/Threonine	99.97
cd08219	255	STKc_Nek3 Catalytic domain of the Protein Serine/T	99.97
cd06638	286	STKc_myosinIIIA Catalytic domain of the Protein Se	99.97
cd05105	400	PTKc_PDGFR_alpha Catalytic domain of the Protein T	99.97
cd05080	283	PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the	99.97
KOG0596	677	consensus Dual specificity; serine/threonine and t	99.97
cd08529	256	STKc_FA2-like Catalytic domain of the Protein Seri	99.97
cd06645	267	STKc_MAP4K3 Catalytic domain of the Protein Serine	99.97
cd07873	301	STKc_PCTAIRE1 Catalytic domain of the Serine/Threo	99.97
cd06619	279	PKc_MKK5 Catalytic domain of the dual-specificity	99.97
cd06643	282	STKc_SLK Catalytic domain of the Protein Serine/Th	99.97
cd05630	285	STKc_GRK6 Catalytic domain of the Protein Serine/T	99.97
KOG0577	948	consensus Serine/threonine protein kinase [Signal	99.97
cd05079	284	PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the	99.96
cd07867	317	STKc_CDC2L6 Catalytic domain of Serine/Threonine K	99.96
cd05094	291	PTKc_TrkC Catalytic domain of the Protein Tyrosine	99.96
cd06639	291	STKc_myosinIIIB Catalytic domain of the Protein Se	99.96
cd05570	318	STKc_PKC Catalytic domain of the Protein Serine/Th	99.96
cd06652	265	STKc_MEKK2 Catalytic domain of the Protein Serine/	99.96
cd07846	286	STKc_CDKL2_3 Catalytic domain of the Serine/Threon	99.96
cd05052	263	PTKc_Abl Catalytic domain of the Protein Tyrosine	99.96
cd08229	267	STKc_Nek7 Catalytic domain of the Protein Serine/T	99.96
cd05632	285	STKc_GRK5 Catalytic domain of the Protein Serine/T	99.96
cd05098	307	PTKc_FGFR1 Catalytic domain of the Protein Tyrosin	99.96
KOG2052	513	consensus Activin A type IB receptor, serine/threo	99.96
PHA02988	283	hypothetical protein; Provisional	99.96
cd05114	256	PTKc_Tec_Rlk Catalytic domain of the Protein Tyros	99.96
cd06655	296	STKc_PAK2 Catalytic domain of the Protein Serine/T	99.96
cd05053	293	PTKc_FGFR Catalytic domain of the Protein Tyrosine	99.96
cd07863	288	STKc_CDK4 Catalytic domain of the Serine/Threonine	99.96
cd05068	261	PTKc_Frk_like Catalytic domain of Fyn-related kina	99.96
cd05072	261	PTKc_Lyn Catalytic domain of the Protein Tyrosine	99.96
cd06608	275	STKc_myosinIII_like Catalytic domain of Class III	99.96
cd06617	283	PKc_MKK3_6 Catalytic domain of the dual-specificit	99.96
cd07847	286	STKc_CDKL1_4 Catalytic domain of the Serine/Threon	99.96
cd08221	256	STKc_Nek9 Catalytic domain of the Protein Serine/T	99.96
cd07841	298	STKc_CDK7 Catalytic domain of the Serine/Threonine	99.96
cd05574	316	STKc_phototropin_like Catalytic domain of Phototro	99.96
cd05032	277	PTKc_InsR_like Catalytic domain of Insulin Recepto	99.96
cd06630	268	STKc_MEKK1 Catalytic domain of the Protein Serine/	99.96
cd08217	265	STKc_Nek2 Catalytic domain of the Protein Serine/T	99.96
cd05081	284	PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of	99.96
cd07832	286	STKc_CCRK Catalytic domain of the Serine/Threonine	99.96
cd05092	280	PTKc_TrkA Catalytic domain of the Protein Tyrosine	99.96
cd06654	296	STKc_PAK1 Catalytic domain of the Protein Serine/T	99.96
KOG0690	516	consensus Serine/threonine protein kinase [Signal	99.96
cd05113	256	PTKc_Btk_Bmx Catalytic domain of the Protein Tyros	99.96
cd05055	302	PTKc_PDGFR Catalytic domain of the Protein Tyrosin	99.96
cd05093	288	PTKc_TrkB Catalytic domain of the Protein Tyrosine	99.96
PHA03211	461	serine/threonine kinase US3; Provisional	99.96
KOG4236	888	consensus Serine/threonine protein kinase PKC mu/P	99.96
cd07839	284	STKc_CDK5 Catalytic domain of the Serine/Threonine	99.96
cd05088	303	PTKc_Tie2 Catalytic domain of the Protein Tyrosine	99.96
cd05045	290	PTKc_RET Catalytic domain of the Protein Tyrosine	99.96
cd07861	285	STKc_CDK1_euk Catalytic domain of the Serine/Threo	99.96
KOG4721	904	consensus Serine/threonine protein kinase, contain	99.96
cd06656	297	STKc_PAK3 Catalytic domain of the Protein Serine/T	99.96
cd05107	401	PTKc_PDGFR_beta Catalytic domain of the Protein Ty	99.96
cd06609	274	STKc_MST3_like Catalytic domain of Mammalian Ste20	99.96
KOG4717	864	consensus Serine/threonine protein kinase [Signal	99.96
cd05089	297	PTKc_Tie1 Catalytic domain of the Protein Tyrosine	99.96
cd07842	316	STKc_CDK8_like Catalytic domain of Cyclin-Dependen	99.96
cd05057	279	PTKc_EGFR_like Catalytic domain of Epidermal Growt	99.96
PF07714	259	Pkinase_Tyr: Protein tyrosine kinase Protein kinas	99.96
cd05051	296	PTKc_DDR Catalytic domain of the Protein Tyrosine	99.96
cd05067	260	PTKc_Lck_Blk Catalytic domain of the Protein Tyros	99.96
cd05071	262	PTKc_Src Catalytic domain of the Protein Tyrosine	99.96
KOG0599	411	consensus Phosphorylase kinase gamma subunit [Carb	99.96
cd05039	256	PTKc_Csk_like Catalytic domain of C-terminal Src k	99.96
cd05066	267	PTKc_EphR_A Catalytic domain of the Protein Tyrosi	99.96
KOG0662	292	consensus Cyclin-dependent kinase CDK5 [Intracellu	99.96
cd05090	283	PTKc_Ror1 Catalytic domain of the Protein Tyrosine	99.96
cd06621	287	PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek	99.96
PHA03210	501	serine/threonine kinase US3; Provisional	99.96
cd05042	269	PTKc_Aatyk Catalytic domain of the Protein Tyrosin	99.96
cd07844	291	STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like	99.96
cd05038	284	PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P	99.96
cd06658	292	STKc_PAK5 Catalytic domain of the Protein Serine/T	99.96
PHA03209	357	serine/threonine kinase US3; Provisional	99.96
cd06612	256	STKc_MST1_2 Catalytic domain of the Protein Serine	99.96
cd05065	269	PTKc_EphR_B Catalytic domain of the Protein Tyrosi	99.96
cd05095	296	PTKc_DDR2 Catalytic domain of the Protein Tyrosine	99.96
cd05609	305	STKc_MAST Catalytic domain of the Protein Serine/T	99.96
cd05076	274	PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th	99.96
cd06628	267	STKc_MAPKKK_Byr2_like Catalytic domain of fungal B	99.96
cd05101	304	PTKc_FGFR2 Catalytic domain of the Protein Tyrosin	99.96
cd06637	272	STKc_TNIK Catalytic domain of the Protein Serine/T	99.96
cd05043	280	PTK_Ryk Pseudokinase domain of Ryk (Receptor relat	99.96
cd05097	295	PTKc_DDR_like Catalytic domain of Discoidin Domain	99.96
cd06624	268	STKc_ASK Catalytic domain of the Protein Serine/Th	99.96
cd07855	334	STKc_ERK5 Catalytic domain of the Serine/Threonine	99.96
KOG0608	1034	consensus Warts/lats-like serine threonine kinases	99.96
cd05046	275	PTK_CCK4 Pseudokinase domain of the Protein Tyrosi	99.96
cd06651	266	STKc_MEKK3 Catalytic domain of the Protein Serine/	99.96
cd05075	272	PTKc_Axl Catalytic domain of the Protein Tyrosine	99.96
cd08223	257	STKc_Nek4 Catalytic domain of the Protein Serine/T	99.96
KOG0669	376	consensus Cyclin T-dependent kinase CDK9 [Cell cyc	99.96
cd06653	264	STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina	99.96
cd07870	291	STKc_PFTAIRE2 Catalytic domain of the Serine/Threo	99.96
cd06626	264	STKc_MEKK4 Catalytic domain of the Protein Serine/	99.96
KOG0579	1187	consensus Ste20-like serine/threonine protein kina	99.96
cd07833	288	STKc_CDKL Catalytic domain of Cyclin-Dependent pro	99.96
cd07849	336	STKc_ERK1_2_like Catalytic domain of Extracellular	99.96
cd06623	264	PKc_MAPKK_plant_like Catalytic domain of Plant dua	99.96
cd05613	290	STKc_MSK1_N N-terminal catalytic domain of the Pro	99.96
cd06632	258	STKc_MEKK1_plant Catalytic domain of the Protein S	99.96
cd05059	256	PTKc_Tec_like Catalytic domain of Tec-like Protein	99.96
cd05103	343	PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi	99.96
cd05078	258	PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain	99.96
KOG1095	1025	consensus Protein tyrosine kinase [Signal transduc	99.96
KOG0196	996	consensus Tyrosine kinase, EPH (ephrin) receptor f	99.96
cd05034	261	PTKc_Src_like Catalytic domain of Src kinase-like	99.96
cd08220	256	STKc_Nek8 Catalytic domain of the Protein Serine/T	99.96
cd05069	260	PTKc_Yes Catalytic domain of the Protein Tyrosine	99.96
cd00192	262	PTKc Catalytic domain of Protein Tyrosine Kinases.	99.96
cd05062	277	PTKc_IGF-1R Catalytic domain of the Protein Tyrosi	99.96
cd05091	283	PTKc_Ror2 Catalytic domain of the Protein Tyrosine	99.96
cd06629	272	STKc_MAPKKK_Bck1_like Catalytic domain of fungal B	99.96
cd05048	283	PTKc_Ror Catalytic Domain of the Protein Tyrosine	99.96
cd06631	265	STKc_YSK4 Catalytic domain of the Protein Serine/T	99.96
cd06610	267	STKc_OSR1_SPAK Catalytic domain of the Protein Ser	99.96
cd05086	268	PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi	99.96
KOG0604	400	consensus MAP kinase-activated protein kinase 2 [S	99.96
cd05049	280	PTKc_Trk Catalytic domain of the Protein Tyrosine	99.96
cd08227	327	PK_STRAD_alpha Pseudokinase domain of STE20-relate	99.96
cd05148	261	PTKc_Srm_Brk Catalytic domain of the Protein Tyros	99.96
cd05084	252	PTKc_Fes Catalytic domain of the Protein Tyrosine	99.96
cd05087	269	PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein	99.96
cd05035	273	PTKc_Axl_like Catalytic Domain of Axl-like Protein	99.96
cd05040	257	PTKc_Ack_like Catalytic domain of the Protein Tyro	99.96
cd05037	259	PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the	99.96
cd07837	295	STKc_CdkB_plant Catalytic domain of the Serine/Thr	99.96
cd07854	342	STKc_MAPK4_6 Catalytic domain of the Serine/Threon	99.96
cd05056	270	PTKc_FAK Catalytic domain of the Protein Tyrosine	99.96
cd08215	258	STKc_Nek Catalytic domain of the Protein Serine/Th	99.96
cd06636	282	STKc_MAP4K4_6 Catalytic domain of the Protein Seri	99.96
KOG3653	534	consensus Transforming growth factor beta/activin	99.96
cd06659	297	STKc_PAK6 Catalytic domain of the Protein Serine/T	99.96
cd05581	280	STKc_PDK1 Catalytic domain of the Protein Serine/T	99.96
cd07860	284	STKc_CDK2_3 Catalytic domain of the Serine/Threoni	99.96
cd06647	293	STKc_PAK_I Catalytic domain of the Protein Serine/	99.96
cd06620	284	PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr	99.96
cd07850	353	STKc_JNK Catalytic domain of the Serine/Threonine	99.96
cd05063	268	PTKc_EphR_A2 Catalytic domain of the Protein Tyros	99.96
cd05061	288	PTKc_InsR Catalytic domain of the Protein Tyrosine	99.96
cd07858	337	STKc_TEY_MAPK_plant Catalytic domain of the Serine	99.96
cd06642	277	STKc_STK25-YSK1 Catalytic domain of the Protein Se	99.96
cd05116	257	PTKc_Syk Catalytic domain of the Protein Tyrosine	99.96
cd05070	260	PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros	99.96
cd05077	262	PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th	99.96
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	99.96
cd06605	265	PKc_MAPKK Catalytic domain of the dual-specificity	99.96
KOG4645	1509	consensus MAPKKK (MAP kinase kinase kinase) SSK2 a	99.96
cd08218	256	STKc_Nek1 Catalytic domain of the Protein Serine/T	99.96
cd05036	277	PTKc_ALK_LTK Catalytic domain of the Protein Tyros	99.96
cd07877	345	STKc_p38alpha_MAPK14 Catalytic domain of the Serin	99.96
cd06627	254	STKc_Cdc7_like Catalytic domain of Cell division c	99.96
cd05073	260	PTKc_Hck Catalytic domain of the Protein Tyrosine	99.96
cd07880	343	STKc_p38gamma_MAPK12 Catalytic domain of the Serin	99.96
cd05110	303	PTKc_HER4 Catalytic domain of the Protein Tyrosine	99.96
cd05058	262	PTKc_Met_Ron Catalytic domain of the Protein Tyros	99.96
cd05579	265	STKc_MAST_like Catalytic domain of Microtubule-ass	99.95
cd05099	314	PTKc_FGFR4 Catalytic domain of the Protein Tyrosin	99.95
cd06917	277	STKc_NAK1_like Catalytic domain of Fungal Nak1-lik	99.95
KOG0984	282	consensus Mitogen-activated protein kinase (MAPK)	99.95
cd05100	334	PTKc_FGFR3 Catalytic domain of the Protein Tyrosin	99.95
cd05060	257	PTKc_Syk_like Catalytic domain of Spleen Tyrosine	99.95
cd07834	330	STKc_MAPK Catalytic domain of the Serine/Threonine	99.95
cd06607	307	STKc_TAO Catalytic domain of the Protein Serine/Th	99.95
cd07845	309	STKc_CDK10 Catalytic domain of the Serine/Threonin	99.95
cd05082	256	PTKc_Csk Catalytic domain of the Protein Tyrosine	99.95
cd07836	284	STKc_Pho85 Catalytic domain of the Serine/Threonin	99.95
cd08530	256	STKc_CNK2-like Catalytic domain of the Protein Ser	99.95
KOG1151	775	consensus Tousled-like protein kinase [Signal tran	99.95
cd07856	328	STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre	99.95
cd05112	256	PTKc_Itk Catalytic domain of the Protein Tyrosine	99.95
cd07843	293	STKc_CDC2L1 Catalytic domain of the Serine/Threoni	99.95
PLN00009	294	cyclin-dependent kinase A; Provisional	99.95
cd05122	253	PKc_STE Catalytic domain of STE family Protein Kin	99.95
cd08528	269	STKc_Nek10 Catalytic domain of the Protein Serine/	99.95
cd05050	288	PTKc_Musk Catalytic domain of the Protein Tyrosine	99.95
cd06640	277	STKc_MST4 Catalytic domain of the Protein Serine/T	99.95
cd06606	260	STKc_MAPKKK Catalytic domain of the Protein Serine	99.95
KOG0986	591	consensus G protein-coupled receptor kinase [Signa	99.95
cd06641	277	STKc_MST3 Catalytic domain of the Protein Serine/T	99.95
cd05583	288	STKc_MSK_N N-terminal catalytic domain of the Prot	99.95
cd05115	257	PTKc_Zap-70 Catalytic domain of the Protein Tyrosi	99.95
cd07830	283	STKc_MAK_like Catalytic domain of Male germ cell-A	99.95
smart00219	258	TyrKc Tyrosine kinase, catalytic domain. Phosphotr	99.95
cd05572	262	STKc_cGK_PKG Catalytic domain of the Protein Serin	99.95
cd07851	343	STKc_p38 Catalytic domain of the Serine/Threonine	99.95
cd08222	260	STKc_Nek11 Catalytic domain of the Protein Serine/	99.95
cd07852	337	STKc_MAPK15 Catalytic domain of the Serine/Threoni	99.95
cd08225	257	STKc_Nek5 Catalytic domain of the Protein Serine/T	99.95
cd07864	302	STKc_CDK12 Catalytic domain of the Serine/Threonin	99.95
KOG0614	732	consensus cGMP-dependent protein kinase [Signal tr	99.95
cd07865	310	STKc_CDK9 Catalytic domain of the Serine/Threonine	99.95
cd07840	287	STKc_CDK9_like Catalytic domain of Cyclin-Dependen	99.95
cd05118	283	STKc_CMGC Catalytic domain of CMGC family Serine/T	99.95
KOG1094	807	consensus Discoidin domain receptor DDR1 [Signal t	99.95
cd05633	279	STKc_GRK3 Catalytic domain of the Protein Serine/T	99.95
cd05577	277	STKc_GRK Catalytic domain of the Protein Serine/Th	99.95
cd07835	283	STKc_CDK1_like Catalytic domain of Cyclin-Dependen	99.95
KOG1006	361	consensus Mitogen-activated protein kinase (MAPK)	99.95
cd05083	254	PTKc_Chk Catalytic domain of the Protein Tyrosine	99.95
cd05606	278	STKc_beta_ARK Catalytic domain of the Protein Seri	99.95
cd05085	250	PTKc_Fer Catalytic domain of the Protein Tyrosine	99.95
cd05047	270	PTKc_Tie Catalytic domain of Tie Protein Tyrosine	99.95
KOG4257	974	consensus Focal adhesion tyrosine kinase FAK, cont	99.95
cd07866	311	STKc_BUR1 Catalytic domain of the Serine/Threonine	99.95
KOG0587	953	consensus Traf2- and Nck-interacting kinase and re	99.95
cd07831	282	STKc_MOK Catalytic domain of the Serine/Threonine	99.95
cd05044	269	PTKc_c-ros Catalytic domain of the Protein Tyrosin	99.95
cd05611	260	STKc_Rim15_like Catalytic domain of fungal Rim15-l	99.95
cd06616	288	PKc_MKK4 Catalytic domain of the dual-specificity	99.95
cd06648	285	STKc_PAK_II Catalytic domain of the Protein Serine	99.95
PTZ00024	335	cyclin-dependent protein kinase; Provisional	99.95
cd05074	273	PTKc_Tyro3 Catalytic domain of the Protein Tyrosin	99.95
KOG1152	772	consensus Signal transduction serine/threonine kin	99.95
cd07857	332	STKc_MPK1 Catalytic domain of the Serine/Threonine	99.95
PHA02882	294	putative serine/threonine kinase; Provisional	99.95
PHA03390	267	pk1 serine/threonine-protein kinase 1; Provisional	99.95
KOG0983	391	consensus Mitogen-activated protein kinase (MAPK)	99.95
cd06635	317	STKc_TAO1 Catalytic domain of the Protein Serine/T	99.95
cd06657	292	STKc_PAK4 Catalytic domain of the Protein Serine/T	99.95
KOG0696	683	consensus Serine/threonine protein kinase [Signal	99.95
cd07879	342	STKc_p38delta_MAPK13 Catalytic domain of the Serin	99.95
cd06614	286	STKc_PAK Catalytic domain of the Protein Serine/Th	99.94
cd06618	296	PKc_MKK7 Catalytic domain of the dual-specificity	99.94
cd05123	250	STKc_AGC Catalytic domain of AGC family Protein Se	99.94
KOG0199	1039	consensus ACK and related non-receptor tyrosine ki	99.94
KOG0664	449	consensus Nemo-like MAPK-related serine/threonine	99.94
PLN03224	507	probable serine/threonine protein kinase; Provisio	99.94
cd07829	282	STKc_CDK_like Catalytic domain of Cyclin-Dependent	99.94
cd06634	308	STKc_TAO2 Catalytic domain of the Protein Serine/T	99.94
KOG0671	415	consensus LAMMER dual specificity kinases [Signal	99.94
KOG4278	1157	consensus Protein tyrosine kinase [Signal transduc	99.94
cd06633	313	STKc_TAO3 Catalytic domain of the Protein Serine/T	99.94
cd05041	251	PTKc_Fes_like Catalytic domain of Fes-like Protein	99.94
KOG1345	378	consensus Serine/threonine kinase [Signal transduc	99.94
cd08226	328	PK_STRAD_beta Pseudokinase domain of STE20-related	99.94
cd07838	287	STKc_CDK4_6_like Catalytic domain of Cyclin-Depend	99.94
cd08216	314	PK_STRAD Pseudokinase domain of STE20-related kina	99.94
KOG0695	593	consensus Serine/threonine protein kinase [Signal	99.94
KOG0668	338	consensus Casein kinase II, alpha subunit [Signal	99.94
cd05576	237	STKc_RPK118_like Catalytic domain of the Protein S	99.94
KOG1025	1177	consensus Epidermal growth factor receptor EGFR an	99.94
KOG0670	752	consensus U4/U6-associated splicing factor PRP4 [R	99.93
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	99.93
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	99.93
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	99.93
smart00221	225	STYKc Protein kinase; unclassified specificity. Ph	99.92
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.91
PRK09188	365	serine/threonine protein kinase; Provisional	99.91
KOG1165	449	consensus Casein kinase (serine/threonine/tyrosine	99.91
smart00220	244	S_TKc Serine/Threonine protein kinases, catalytic	99.9
KOG0200	609	consensus Fibroblast/platelet-derived growth facto	99.9
KOG1290	590	consensus Serine/threonine protein kinase [Signal	99.9
KOG1163	341	consensus Casein kinase (serine/threonine/tyrosine	99.89
KOG0576	829	consensus Mitogen-activated protein kinase kinase	99.88
cd00180	215	PKc Catalytic domain of Protein Kinases. Protein K	99.88
cd05147	190	RIO1_euk RIO kinase family; eukaryotic RIO1, catal	99.88
cd05145	190	RIO1_like RIO kinase family; RIO1, RIO3 and simila	99.87
KOG0665	369	consensus Jun-N-terminal kinase (JNK) [Signal tran	99.87
PRK10359	232	lipopolysaccharide core biosynthesis protein; Prov	99.86
KOG1027	903	consensus Serine/threonine protein kinase and endo	99.86
PRK10345	210	hypothetical protein; Provisional	99.86
KOG1167	418	consensus Serine/threonine protein kinase of the C	99.85
KOG1164	322	consensus Casein kinase (serine/threonine/tyrosine	99.85
KOG1024	563	consensus Receptor-like protein tyrosine kinase RY	99.83
KOG4158	598	consensus BRPK/PTEN-induced protein kinase [Signal	99.81
smart00090	237	RIO RIO-like kinase.	99.78
KOG1166	974	consensus Mitotic checkpoint serine/threonine prot	99.76
PRK14879	211	serine/threonine protein kinase; Provisional	99.76
PRK12274	218	serine/threonine protein kinase; Provisional	99.75
PLN00181	793	protein SPA1-RELATED; Provisional	99.75
PRK09605	535	bifunctional UGMP family protein/serine/threonine	99.74
COG0515	384	SPS1 Serine/threonine protein kinase [General func	99.74
cd05144	198	RIO2_C RIO kinase family; RIO2, C-terminal catalyt	99.74
TIGR03724	199	arch_bud32 Kae1-associated kinase Bud32. Members o	99.72
KOG0590	601	consensus Checkpoint kinase and related serine/thr	99.71
PF14531	288	Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_	99.69
cd05119	187	RIO RIO kinase family, catalytic domain. The RIO k	99.67
PRK01723	239	3-deoxy-D-manno-octulosonic-acid kinase; Reviewed	99.64
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.63
cd05120	155	APH_ChoK_like Aminoglycoside 3'-phosphotransferase	99.63
smart00750	176	KIND kinase non-catalytic C-lobe domain. It is an	99.62
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	99.61
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.53
TIGR01982	437	UbiB 2-polyprenylphenol 6-hydroxylase. This model	99.44
PRK04750	537	ubiB putative ubiquinone biosynthesis protein UbiB	99.4
cd05151	170	ChoK Choline Kinase (ChoK). The ChoK subfamily is	99.37
KOG3087	229	consensus Serine/threonine protein kinase [General	99.34
cd05146	197	RIO3_euk RIO kinase family; eukaryotic RIO3, catal	99.34
KOG0606	1205	consensus Microtubule-associated serine/threonine	99.3
KOG0590	601	consensus Checkpoint kinase and related serine/thr	99.29
KOG1033	516	consensus eIF-2alpha kinase PEK/EIF2AK3 [Translati	99.28
KOG1023	484	consensus Natriuretic peptide receptor, guanylate	99.26
COG3642	204	Mn2+-dependent serine/threonine protein kinase [Si	99.17
KOG1243	690	consensus Protein kinase [General function predict	99.17
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	99.11
cd05154	223	ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 an	99.06
PRK15123	268	lipopolysaccharide core heptose(I) kinase RfaP; Pr	98.99
KOG1266	458	consensus Protein kinase [Signal transduction mech	98.95
KOG3741	655	consensus Poly(A) ribonuclease subunit [RNA proces	98.9
PF01163	188	RIO1: RIO1 family; InterPro: IPR018934 Protein pho	98.88
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	98.87
PF06293	206	Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family;	98.77
PF06176	229	WaaY: Lipopolysaccharide core biosynthesis protein	98.76
COG0478	304	RIO-like serine/threonine protein kinase fused to	98.68
KOG1235	538	consensus Predicted unusual protein kinase [Genera	98.58
PRK09902	216	hypothetical protein; Provisional	98.51
TIGR02172	226	Fb_sc_TIGR02172 Fibrobacter succinogenes paralogou	98.41
COG0661	517	AarF Predicted unusual protein kinase [General fun	98.33
COG1718	268	RIO1 Serine/threonine protein kinase involved in c	98.28
PF01636	239	APH: Phosphotransferase enzyme family This family	98.21
cd05150	244	APH Aminoglycoside 3'-phosphotransferase (APH). Th	98.04
PF10707	199	YrbL-PhoP_reg: PhoP regulatory network protein Yrb	98.02
PLN02876	822	acyl-CoA dehydrogenase	97.99
COG2112	201	Predicted Ser/Thr protein kinase [Signal transduct	97.95
cd05155	235	APH_ChoK_like_1 Uncharacterized bacterial proteins	97.89
COG4248	637	Uncharacterized protein with protein kinase and he	97.85
PF12260	188	PIP49_C: Protein-kinase domain of FAM69; InterPro:	97.78
KOG0606	1205	consensus Microtubule-associated serine/threonine	97.75
PRK09550	401	mtnK methylthioribose kinase; Reviewed	97.72
PRK10593	297	hypothetical protein; Provisional	97.64
TIGR02721	256	ycfN_thiK thiamine kinase. Members of this family	97.57
PF13095	207	FTA2: Kinetochore Sim4 complex subunit FTA2	97.4
KOG2137	700	consensus Protein kinase [Signal transduction mech	97.33
PRK05231	319	homoserine kinase; Provisional	97.32
TIGR01767	370	MTRK 5-methylthioribose kinase. This enzyme is inv	97.27
cd05157	235	ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes.	97.25
cd05153	296	HomoserineK_II Homoserine Kinase, type II. Homoser	97.2
PLN02756	418	S-methyl-5-thioribose kinase	97.14
TIGR00938	307	thrB_alt homoserine kinase, Neisseria type. Homose	97.0
PRK12396	409	5-methylribose kinase; Reviewed	96.86
KOG2268	465	consensus Serine/threonine protein kinase [Signal	96.75
cd05152	276	MPH2' Macrolide 2'-Phosphotransferase (MPH2'). MPH	96.58
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	96.57
PF07387	308	Seadorna_VP7: Seadornavirus VP7; InterPro: IPR0099	96.57
COG3173	321	Predicted aminoglycoside phosphotransferase [Gener	96.52
KOG2270	520	consensus Serine/threonine protein kinase involved	96.28
PF03881	288	Fructosamin_kin: Fructosamine kinase; InterPro: IP	96.01
KOG0576	829	consensus Mitogen-activated protein kinase kinase	95.86
COG5072	488	ALK1 Serine/threonine kinase of the haspin family	95.76
cd05156	302	ChoK_euk Choline Kinase (ChoK) in eukaryotes. The	95.72
PRK10271	188	thiK thiamine kinase; Provisional	95.56
PTZ00384	383	choline kinase; Provisional	95.45
TIGR02906	313	spore_CotS spore coat protein, CotS family. Member	95.38
COG3001	286	Uncharacterized protein conserved in bacteria [Fun	95.22
PHA03111	444	Ser/Thr kinase; Provisional	95.09
COG0510	269	ycfN Thiamine kinase and related kinases [Coenzyme	94.98
KOG0667	586	consensus Dual-specificity tyrosine-phosphorylatio	94.61
PF01633	211	Choline_kinase: Choline/ethanolamine kinase; Inter	94.54
PF05445	434	Pox_ser-thr_kin: Poxvirus serine/threonine protein	94.51
smart00587	196	CHK ZnF_C4 abd HLH domain containing kinases domai	94.28
PLN02236	344	choline kinase	93.9
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	93.77
COG2334	331	Putative homoserine kinase type II (protein kinase	93.5

>KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=100.00  E-value=8e-43  Score=280.51  Aligned_cols=195  Identities=24%  Similarity=0.376  Sum_probs=165.6

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc--chHHHHHHHHHHHHhhhC
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ--NNEQLEMVREEIRVSSLF  102 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~--~~~~~~~~~~E~~~l~~l  102 (262)
                      ..+|.+.+.||.|+||+||+|++..++.                      .||||.+...  .....+-+..|+.+|+.+
T Consensus         9 ~~~y~~~~~iG~GsfavVykg~h~~~~~----------------------~VAIK~i~~~~l~~k~~e~L~~Ei~iLkel   66 (429)
T KOG0595|consen    9 VGDYELSREIGSGSFAVVYKGRHKKSGT----------------------EVAIKCIAKKKLNKKLVELLLSEIKILKEL   66 (429)
T ss_pred             cccceehhhccCcceEEEEEeEeccCCc----------------------eEEeeeehhhccCHHHHHHHHHHHHHHHhc
Confidence            3579999999999999999999988765                      6777776655  555667788999999999


Q ss_pred             CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCe
Q 024842          103 SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPY  182 (262)
Q Consensus       103 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~i  182 (262)
                      +||||+.++++.          ...+.+|+|||||.+|+|.+++.    +.+.+++.+++.++.||+.||++||+++  |
T Consensus        67 ~H~nIV~l~d~~----------~~~~~i~lVMEyC~gGDLs~yi~----~~~~l~e~t~r~Fm~QLA~alq~L~~~~--I  130 (429)
T KOG0595|consen   67 KHPNIVRLLDCI----------EDDDFIYLVMEYCNGGDLSDYIR----RRGRLPEATARHFMQQLASALQFLHENN--I  130 (429)
T ss_pred             CCcceeeEEEEE----------ecCCeEEEEEEeCCCCCHHHHHH----HcCCCCHHHHHHHHHHHHHHHHHHHHCC--e
Confidence            999999999987          45778999999999999999997    5557999999999999999999999999  9


Q ss_pred             eecCCCCCcEEEecCCCC--CCceEEeeccceeeccccC----ccCcccCCcccchhhhhhhhhhhhhcCcccchheehe
Q 024842          183 AHNDVKPGNILITCRKGQ--PPLAILMDFGSARPAQSKF----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMR  256 (262)
Q Consensus       183 vH~dikp~Nill~~~~~~--~~~~kl~Dfg~a~~~~~~~----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~  256 (262)
                      +||||||+|||++.....  .+.+||+|||+|+...+..    ..|++.|++||-+-..     .+-++.|+||.|+++|
T Consensus       131 iHRDLKPQNiLLs~~~~~~~~~~LKIADFGfAR~L~~~~~a~tlcGSplYMAPEV~~~~-----~YdAKADLWSiG~Ily  205 (429)
T KOG0595|consen  131 IHRDLKPQNILLSTTARNDTSPVLKIADFGFARFLQPGSMAETLCGSPLYMAPEVIMSQ-----QYDAKADLWSIGTILY  205 (429)
T ss_pred             eeccCCcceEEeccCCCCCCCceEEecccchhhhCCchhHHHHhhCCccccCHHHHHhc-----cccchhhHHHHHHHHH
Confidence            999999999999876222  2689999999999887654    4689999998866322     3335678888888888


Q ss_pred             ecccCC
Q 024842          257 ELMFGR  262 (262)
Q Consensus       257 ~l~~G~  262 (262)
                      +|++|+
T Consensus       206 q~l~g~  211 (429)
T KOG0595|consen  206 QCLTGK  211 (429)
T ss_pred             HHHhCC
Confidence            888885

>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]

Probab=100.00  E-value=2e-39  Score=258.40  Aligned_cols=194  Identities=23%  Similarity=0.339  Sum_probs=165.9

Q ss_pred             eecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc---chHHHHHHHHHHHH
Q 024842           22 WINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ---NNEQLEMVREEIRV   98 (262)
Q Consensus        22 ~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~---~~~~~~~~~~E~~~   98 (262)
                      .+..++|++.+.||+|+||.|++++...+++                      .||+|.+...   ..........|..+
T Consensus        21 ~~~~~dF~~lkviGkG~fGkV~~Vrk~dt~k----------------------iYAmKvl~K~~iv~~~e~~~~~~Er~I   78 (357)
T KOG0598|consen   21 MVGPDDFEILKVIGKGSFGKVFQVRKKDTGK----------------------IYAMKVLKKKKIVEKKEVRHTKAERNI   78 (357)
T ss_pred             cCChhheeeeeeeeccCCceEEEEEEcccCc----------------------eeehhhhhhhHhhhhhhHHHHHHHHHH
Confidence            3447899999999999999999999987766                      5677665543   34456788899999


Q ss_pred             hhhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcC
Q 024842           99 SSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSL  178 (262)
Q Consensus        99 l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~  178 (262)
                      |..++||.|+++.-.|          ++.+.+|+|++|+.||.|...++    +...+++..+..++..|+.||.|||+.
T Consensus        79 L~~v~hPFiv~l~ysF----------Qt~~kLylVld~~~GGeLf~hL~----~eg~F~E~~arfYlaEi~lAL~~LH~~  144 (357)
T KOG0598|consen   79 LSKIKHPFIVKLIYSF----------QTEEKLYLVLDYLNGGELFYHLQ----REGRFSEDRARFYLAEIVLALGYLHSK  144 (357)
T ss_pred             HHhCCCCcEeeeEEec----------ccCCeEEEEEeccCCccHHHHHH----hcCCcchhHHHHHHHHHHHHHHHHHhC
Confidence            9999999999999888          66889999999999999998886    677799999999999999999999999


Q ss_pred             CCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccc-----cCccCcccCCcccchhhhhhhhhhhhhcCcccchhe
Q 024842          179 EPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQS-----KFALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQI  253 (262)
Q Consensus       179 ~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~-----~~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~  253 (262)
                      +  |+||||||+|||++.++    .++|+|||+|+....     ....||+.|++||-+..-|+...     -|.||+|+
T Consensus       145 g--IiyRDlKPENILLd~~G----Hi~LtDFgL~k~~~~~~~~t~tfcGT~eYmAPEil~~~gy~~~-----vDWWsLGi  213 (357)
T KOG0598|consen  145 G--IIYRDLKPENILLDEQG----HIKLTDFGLCKEDLKDGDATRTFCGTPEYMAPEILLGKGYDKA-----VDWWSLGI  213 (357)
T ss_pred             C--eeeccCCHHHeeecCCC----cEEEeccccchhcccCCCccccccCCccccChHHHhcCCCCcc-----cchHhHHH
Confidence            9  99999999999999888    799999999995432     22468899999998766654433     58999999


Q ss_pred             eheecccCC
Q 024842          254 LMRELMFGR  262 (262)
Q Consensus       254 ~~~~l~~G~  262 (262)
                      ++|||++|.
T Consensus       214 llYeML~G~  222 (357)
T KOG0598|consen  214 LLYEMLTGK  222 (357)
T ss_pred             HHHHHhhCC
Confidence            999999884

>KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=1e-40  Score=256.78  Aligned_cols=187  Identities=27%  Similarity=0.411  Sum_probs=157.4

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc--chHHHHHHHHHHHHhhhC
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ--NNEQLEMVREEIRVSSLF  102 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~--~~~~~~~~~~E~~~l~~l  102 (262)
                      -.+|++.++||+|.||+||++.+..+++                      .+|.|.+...  +....+.+..|+.+|++|
T Consensus        18 l~~y~Il~~IG~GsFg~vykv~~~~~g~----------------------l~a~K~i~f~~md~k~rq~~v~Ei~lLkQL   75 (375)
T KOG0591|consen   18 LADYQILKKIGRGSFGEVYKVQCLLDGK----------------------LVALKKIQFGMMDAKARQDCVKEISLLKQL   75 (375)
T ss_pred             HHHHHHHHHHcCCcchheEEeeeccCcc----------------------hhhhhhcchhhccHHHHHHHHHHHHHHHhc
Confidence            3579999999999999999999987765                      6777777644  455568899999999999


Q ss_pred             CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCC--
Q 024842          103 SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEP--  180 (262)
Q Consensus       103 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~--  180 (262)
                      +||||++++++.+.        ....-++++||+|..|+|.+.++...+....+++.++|.++.|++.||.++|..-+  
T Consensus        76 ~HpNIVqYy~~~f~--------~~~evlnivmE~c~~GDLsqmIk~~K~qkr~ipE~~Vwk~f~QL~~AL~~cH~~~~r~  147 (375)
T KOG0591|consen   76 NHPNIVQYYAHSFI--------EDNEVLNIVMELCDAGDLSQMIKHFKKQKRLIPEKTVWKYFVQLCRALYHCHSKIPRG  147 (375)
T ss_pred             CCchHHHHHHHhhh--------ccchhhHHHHHhhcccCHHHHHHHHHhccccCchHHHHHHHHHHHHHHHHHhcccccc
Confidence            99999999996542        33444899999999999999999999888999999999999999999999999433  


Q ss_pred             CeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccCc-----cCcccCCccc-----------chhhhhhhhhhhhh
Q 024842          181 PYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKFA-----LGQRRYSCRN-----------GLLSIVLHLSELLS  244 (262)
Q Consensus       181 ~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~~-----~~~~~~~~~~-----------d~~s~g~~~~e~~~  244 (262)
                      .|+||||||.||+++.++    .+||+|||+++...+...     .|+|-|++||           |+||+||.++||++
T Consensus       148 ~VmHRDIKPaNIFl~~~g----vvKLGDfGL~r~l~s~~tfA~S~VGTPyYMSPE~i~~~~Y~~kSDiWslGCllyEMca  223 (375)
T KOG0591|consen  148 TVMHRDIKPANIFLTANG----VVKLGDFGLGRFLSSKTTFAHSLVGTPYYMSPERIHESGYNFKSDIWSLGCLLYEMCA  223 (375)
T ss_pred             ceeeccCcchheEEcCCC----ceeeccchhHhHhcchhHHHHhhcCCCcccCHHHHhcCCCCcchhHHHHHHHHHHHHh
Confidence            499999999999999877    799999999998876653     5777777765           66777777777665


Q ss_pred             c
Q 024842          245 C  245 (262)
Q Consensus       245 ~  245 (262)
                      .
T Consensus       224 L  224 (375)
T KOG0591|consen  224 L  224 (375)
T ss_pred             c
Confidence            4

>KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=1.3e-38  Score=267.58  Aligned_cols=190  Identities=26%  Similarity=0.372  Sum_probs=165.1

Q ss_pred             CceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhc---cchHHHHHHHHHHHHhhhC
Q 024842           26 NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLI---QNNEQLEMVREEIRVSSLF  102 (262)
Q Consensus        26 ~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~---~~~~~~~~~~~E~~~l~~l  102 (262)
                      .+|+..+.||+|+|+.||.+++..+++.                      ||+|.+..   .+....+...+|+++.+.|
T Consensus        18 ~~Y~~g~~LGkGgFA~cYe~~~~~tge~----------------------~A~KvVpk~~l~k~~~reKv~~EIeIHr~L   75 (592)
T KOG0575|consen   18 KRYKRGRFLGKGGFARCYEARDLDTGEV----------------------VAVKVVPKKLLKKPKQREKVLNEIEIHRSL   75 (592)
T ss_pred             ceeeeeeeeccCcceEEEEEEEcCCCcE----------------------EEEEEeehHHhcCcchHHHHHHHHHHHHhc
Confidence            5799999999999999999999888775                      45554433   2445568889999999999


Q ss_pred             CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCe
Q 024842          103 SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPY  182 (262)
Q Consensus       103 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~i  182 (262)
                      +|||||+++++|          ++....|+++|+|..++|..+++    ++.+++|.++..+++||+.||.|||+.+  |
T Consensus        76 ~HpnIV~f~~~F----------EDs~nVYivLELC~~~sL~el~K----rrk~ltEpEary~l~QIv~GlkYLH~~~--I  139 (592)
T KOG0575|consen   76 KHPNIVQFYHFF----------EDSNNVYIVLELCHRGSLMELLK----RRKPLTEPEARYFLRQIVEGLKYLHSLG--I  139 (592)
T ss_pred             CCCcEEeeeeEe----------ecCCceEEEEEecCCccHHHHHH----hcCCCCcHHHHHHHHHHHHHHHHHHhcC--c
Confidence            999999999999          66788999999999999999987    6777999999999999999999999999  9


Q ss_pred             eecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-----ccCcccCCcccchhhhhhhhhhhhhcCcccchheehee
Q 024842          183 AHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRE  257 (262)
Q Consensus       183 vH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~  257 (262)
                      +|||||..|+|++.+.    .+||+|||+|.....+.     ..|||.|-+||-+..-|.-+-     .||||+|++||-
T Consensus       140 iHRDLKLGNlfL~~~~----~VKIgDFGLAt~le~~~Erk~TlCGTPNYIAPEVl~k~gHsfE-----vDiWSlGcvmYt  210 (592)
T KOG0575|consen  140 IHRDLKLGNLFLNENM----NVKIGDFGLATQLEYDGERKKTLCGTPNYIAPEVLNKSGHSFE-----VDIWSLGCVMYT  210 (592)
T ss_pred             eecccchhheeecCcC----cEEecccceeeeecCcccccceecCCCcccChhHhccCCCCCc-----hhhhhhhhHHHh
Confidence            9999999999998776    69999999999987552     469999999998876655432     589999999999


Q ss_pred             cccCC
Q 024842          258 LMFGR  262 (262)
Q Consensus       258 l~~G~  262 (262)
                      |++||
T Consensus       211 LL~G~  215 (592)
T KOG0575|consen  211 LLVGR  215 (592)
T ss_pred             hhhCC
Confidence            99986

>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=1.4e-38  Score=256.20  Aligned_cols=205  Identities=23%  Similarity=0.268  Sum_probs=165.5

Q ss_pred             cCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCC
Q 024842           24 NENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFS  103 (262)
Q Consensus        24 ~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~  103 (262)
                      ..+.|.+.+.||+|+||.|-+|....+++.+|+|...+++...-+               ..........+|+++|++|+
T Consensus       170 ~~d~yii~~~LGsGafg~Vkla~e~~tgk~vAiKIi~krk~~~~s---------------~~~~~~~~v~~EieILkkL~  234 (475)
T KOG0615|consen  170 FNDYYIISKTLGSGAFGLVKLAYEKKTGKQVAIKIINKRKSTGCS---------------RAIAKTRDVQNEIEILKKLS  234 (475)
T ss_pred             hcceeEeeeeecCCceeEEEEEEEcccCcEEEeeeeehhhccccc---------------ccccchhhhHHHHHHHHhcC
Confidence            367899999999999999999999998885554422222111000               00112234679999999999


Q ss_pred             CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCee
Q 024842          104 HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYA  183 (262)
Q Consensus       104 h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~iv  183 (262)
                      ||||+++.++|          ...+..|+||||+.||+|.+.+-    .++.+.+..-+.++.||+.|+.|||++|  |+
T Consensus       235 HP~IV~~~d~f----------~~~ds~YmVlE~v~GGeLfd~vv----~nk~l~ed~~K~~f~Qll~avkYLH~~G--I~  298 (475)
T KOG0615|consen  235 HPNIVRIKDFF----------EVPDSSYMVLEYVEGGELFDKVV----ANKYLREDLGKLLFKQLLTAVKYLHSQG--II  298 (475)
T ss_pred             CCCEEEEeeee----------ecCCceEEEEEEecCccHHHHHH----hccccccchhHHHHHHHHHHHHHHHHcC--cc
Confidence            99999999998          44677799999999999999886    6777999999999999999999999999  99


Q ss_pred             ecCCCCCcEEEecCCCCCCceEEeeccceeeccccC----ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecc
Q 024842          184 HNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELM  259 (262)
Q Consensus       184 H~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~  259 (262)
                      ||||||+|||++.+. ....+||+|||+|+......    ..|++.|.+||-+-+-|+..+-  +.-|+||+|+++|-++
T Consensus       299 HRDiKPeNILl~~~~-e~~llKItDFGlAK~~g~~sfm~TlCGTpsYvAPEVl~~kg~~~~~--~kVDiWSlGcvLfvcL  375 (475)
T KOG0615|consen  299 HRDIKPENILLSNDA-EDCLLKITDFGLAKVSGEGSFMKTLCGTPSYVAPEVLASKGVEYYP--SKVDIWSLGCVLFVCL  375 (475)
T ss_pred             cccCCcceEEeccCC-cceEEEecccchhhccccceehhhhcCCccccChhheecCCeeccc--chheeeeccceEEEEe
Confidence            999999999998764 33479999999999875432    4699999999999888776544  4569999999999999


Q ss_pred             cCC
Q 024842          260 FGR  262 (262)
Q Consensus       260 ~G~  262 (262)
                      +|.
T Consensus       376 sG~  378 (475)
T KOG0615|consen  376 SGY  378 (475)
T ss_pred             ccC
Confidence            983

>KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms]

Probab=100.00  E-value=1.9e-37  Score=234.63  Aligned_cols=210  Identities=39%  Similarity=0.613  Sum_probs=177.1

Q ss_pred             CCceeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHH
Q 024842           18 GGDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIR   97 (262)
Q Consensus        18 ~~~~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~   97 (262)
                      .++++|++++|++.+.+|.|||+.||++....+                      ++.||+|++...+.++.+...+|+.
T Consensus        13 ~~tv~In~~Ryri~~~LgeGGfsfv~LV~~~s~----------------------~~~YAlKkI~c~~~~~~e~~~rEid   70 (302)
T KOG2345|consen   13 RGTVIINNKRYRIQRLLGEGGFSFVDLVKGLST----------------------GHLYALKKILCHSQEDIEEALREID   70 (302)
T ss_pred             CCcEEEcCceEEEeeeecCCCceeeeeecccCc----------------------ccchhhheeeccchHHHHHHHHHHH
Confidence            789999999999999999999999999996654                      4489999999999888899999999


Q ss_pred             HhhhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHc
Q 024842           98 VSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHS  177 (262)
Q Consensus        98 ~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~  177 (262)
                      ..++++|||+++++++.+...     ..+....|++++|...|+|.+.+..+...+..+++.+++.++.++++||++||+
T Consensus        71 ~~rkf~s~~vl~l~dh~l~~~-----~D~~~~~yll~Pyy~~Gsl~d~i~~~k~kg~~~sE~~iL~if~gic~gL~~lH~  145 (302)
T KOG2345|consen   71 NHRKFNSPNVLRLVDHQLREE-----KDGKHEAYLLLPYYKRGSLLDEIERLKIKGNFVSEAQILWIFLGICRGLEALHE  145 (302)
T ss_pred             HHHhhCCcchHHHHHHHHHhh-----ccCceeEEEEeehhccccHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999886432     235678999999999999999999888888889999999999999999999999


Q ss_pred             CCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC--------------ccCcccCCcccchh-hhhhhhhhh
Q 024842          178 LEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF--------------ALGQRRYSCRNGLL-SIVLHLSEL  242 (262)
Q Consensus       178 ~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~--------------~~~~~~~~~~~d~~-s~g~~~~e~  242 (262)
                      ..++++||||||.|||+++++    .++|.|||.+....-..              ..-+..|.+||-.- ..++...  
T Consensus       146 ~~~~yAH~DiKP~NILls~~~----~~vl~D~GS~~~a~i~i~~~~~a~~lQe~a~e~Ct~pyRAPELf~vk~~~ti~--  219 (302)
T KOG2345|consen  146 KEPPYAHRDIKPANILLSDSG----LPVLMDLGSATQAPIQIEGSRQALRLQEWAEERCTIPYRAPELFNVKSHCTIT--  219 (302)
T ss_pred             cCCcccccCCCcceeEecCCC----ceEEEeccCccccceEeechHHHHHHHHHHHHhCCCcccCchheecccCcccc--
Confidence            988999999999999998765    69999999998654111              24556677766331 2233333  


Q ss_pred             hhcCcccchheeheecccC
Q 024842          243 LSCGTVRVIQILMRELMFG  261 (262)
Q Consensus       243 ~~~~~v~~~g~~~~~l~~G  261 (262)
                       ++.||||+|+++|.|++|
T Consensus       220 -ertDIWSLGCtLYa~mf~  237 (302)
T KOG2345|consen  220 -ERTDIWSLGCTLYAMMFG  237 (302)
T ss_pred             -cccchhhhhHHHHHHHHc
Confidence             367888888888888877

>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]

Probab=100.00  E-value=4.8e-38  Score=250.60  Aligned_cols=193  Identities=20%  Similarity=0.273  Sum_probs=165.0

Q ss_pred             ecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc-chHHHHHHHHHHHHhhh
Q 024842           23 INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ-NNEQLEMVREEIRVSSL  101 (262)
Q Consensus        23 ~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~-~~~~~~~~~~E~~~l~~  101 (262)
                      +..++.+.++.||+|+.|+||+++++.+++                      .+|+|.+... +....+++.+|+++++.
T Consensus        76 i~~~dle~~~~lG~G~gG~V~kv~Hk~t~~----------------------i~AlK~I~~~~~~~~~~Qi~rEl~il~~  133 (364)
T KOG0581|consen   76 ISLSDLERLGVLGSGNGGTVYKVRHKPTGK----------------------IYALKVILLNIDPALQKQILRELEILRS  133 (364)
T ss_pred             cCHHHhhhhhhcccCCCcEEEEEEEcCCCe----------------------EEEEEeecccCCHHHHHHHHHHHHHHhh
Confidence            344588899999999999999999998866                      7888888544 55667899999999999


Q ss_pred             CCCCCccchhhhhHHHhhhccCCCCcc-eeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHc-CC
Q 024842          102 FSHRNLLPLLDHAIIAVKANQEGSWKH-EAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHS-LE  179 (262)
Q Consensus       102 l~h~~i~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~-~~  179 (262)
                      .+||+|++++++|..          .+ ...++||||.+|+|.+++.    ..++++|..+-.++.++++||.|||. .+
T Consensus       134 ~~spyIV~~ygaF~~----------~~~~isI~mEYMDgGSLd~~~k----~~g~i~E~~L~~ia~~VL~GL~YLh~~~~  199 (364)
T KOG0581|consen  134 CQSPYIVGFYGAFYS----------NGEEISICMEYMDGGSLDDILK----RVGRIPEPVLGKIARAVLRGLSYLHEERK  199 (364)
T ss_pred             CCCCCeeeEeEEEEe----------CCceEEeehhhcCCCCHHHHHh----hcCCCCHHHHHHHHHHHHHHHHHHhhccC
Confidence            999999999999953          33 6999999999999999887    44669999999999999999999996 66


Q ss_pred             CCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC---ccCcccCCcccchhhhhhhhhhhhhcCcccchheehe
Q 024842          180 PPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF---ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMR  256 (262)
Q Consensus       180 ~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~---~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~  256 (262)
                        |+||||||.|||+...+    .+||+|||.+.......   ..||..|++||.+-+-.+..     .+||||+|+.++
T Consensus       200 --IIHRDIKPsNlLvNskG----eVKicDFGVS~~lvnS~a~tfvGT~~YMsPERi~g~~Ys~-----~sDIWSLGLsll  268 (364)
T KOG0581|consen  200 --IIHRDIKPSNLLVNSKG----EVKICDFGVSGILVNSIANTFVGTSAYMSPERISGESYSV-----KSDIWSLGLSLL  268 (364)
T ss_pred             --eeeccCCHHHeeeccCC----CEEeccccccHHhhhhhcccccccccccChhhhcCCcCCc-----ccceecccHHHH
Confidence              99999999999997766    79999999998765443   46899999999885542221     389999999999


Q ss_pred             ecccCC
Q 024842          257 ELMFGR  262 (262)
Q Consensus       257 ~l~~G~  262 (262)
                      |+..||
T Consensus       269 E~a~Gr  274 (364)
T KOG0581|consen  269 ELAIGR  274 (364)
T ss_pred             HHhhCC
Confidence            999997

>KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only]

Probab=100.00  E-value=4.6e-37  Score=238.82  Aligned_cols=184  Identities=25%  Similarity=0.325  Sum_probs=154.4

Q ss_pred             CceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccch--HHHHHHHHHHHHhhhCC
Q 024842           26 NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNN--EQLEMVREEIRVSSLFS  103 (262)
Q Consensus        26 ~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~--~~~~~~~~E~~~l~~l~  103 (262)
                      +.|+.+.++|+|+||.|++|+++.|++                      .||||++..++.  ...+-..+|+++|++++
T Consensus         2 ekYE~LgkvGEGSYGvV~KCrnk~Tgq----------------------IVAIKkF~Esedd~~VkKIAlREIrmLKqLk   59 (396)
T KOG0593|consen    2 EKYEKLGKVGEGSYGVVMKCRNKDTGQ----------------------IVAIKKFVESEDDPVVKKIALREIRMLKQLK   59 (396)
T ss_pred             cHHhhhhccccCcceEEEEeccCCccc----------------------EEEEEeeccCCccHHHHHHHHHHHHHHHhcc
Confidence            468889999999999999999998876                      788888876643  33455689999999999


Q ss_pred             CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCee
Q 024842          104 HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYA  183 (262)
Q Consensus       104 h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~iv  183 (262)
                      |+|++.++++|          .....+++|+|||...-|..+-    .....++...+..++.|++.|+.|+|+++  ++
T Consensus        60 H~NLVnLiEVF----------rrkrklhLVFE~~dhTvL~eLe----~~p~G~~~~~vk~~l~Q~l~ai~~cHk~n--~I  123 (396)
T KOG0593|consen   60 HENLVNLIEVF----------RRKRKLHLVFEYCDHTVLHELE----RYPNGVPSELVKKYLYQLLKAIHFCHKNN--CI  123 (396)
T ss_pred             cchHHHHHHHH----------HhcceeEEEeeecchHHHHHHH----hccCCCCHHHHHHHHHHHHHHhhhhhhcC--ee
Confidence            99999999999          4478899999999875444432    25556999999999999999999999999  99


Q ss_pred             ecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-----------------ccCcccCCcccchhhhhhhhhhhhhcC
Q 024842          184 HNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-----------------ALGQRRYSCRNGLLSIVLHLSELLSCG  246 (262)
Q Consensus       184 H~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-----------------~~~~~~~~~~~d~~s~g~~~~e~~~~~  246 (262)
                      ||||||+|||++..+    .+||+|||+|+....+.                 ..+...|..|.|+|++||+..|+++. 
T Consensus       124 HRDIKPENILit~~g----vvKLCDFGFAR~L~~pgd~YTDYVATRWYRaPELLvGDtqYG~pVDiWAiGCv~aEl~~G-  198 (396)
T KOG0593|consen  124 HRDIKPENILITQNG----VVKLCDFGFARTLSAPGDNYTDYVATRWYRAPELLVGDTQYGKPVDIWAIGCVFAELLTG-  198 (396)
T ss_pred             cccCChhheEEecCC----cEEeccchhhHhhcCCcchhhhhhhhhhccChhhhcccCcCCCcccchhhhHHHHHHhcC-
Confidence            999999999999888    89999999999766221                 25777899999999999999999874 


Q ss_pred             cccchh
Q 024842          247 TVRVIQ  252 (262)
Q Consensus       247 ~v~~~g  252 (262)
                      ...+.|
T Consensus       199 ~pL~PG  204 (396)
T KOG0593|consen  199 EPLWPG  204 (396)
T ss_pred             CcCCCC
Confidence            443333

>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]

Probab=100.00  E-value=6.7e-37  Score=237.08  Aligned_cols=193  Identities=25%  Similarity=0.318  Sum_probs=167.2

Q ss_pred             ecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc---chHHHHHHHHHHHHh
Q 024842           23 INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ---NNEQLEMVREEIRVS   99 (262)
Q Consensus        23 ~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~---~~~~~~~~~~E~~~l   99 (262)
                      ..-++|+..+.||.|+||.|.+++...++.                      -||+|.+...   .-.+.++..+|..+|
T Consensus        41 ~~l~dfe~~~tlGtGSFGrV~LVr~k~~g~----------------------yYAmKvL~k~~vVklKQveH~~nEk~vL   98 (355)
T KOG0616|consen   41 YSLQDFERLKTLGTGSFGRVHLVREKHSGN----------------------YYAMKVLDKQKVVKLKQVEHTHNEKRVL   98 (355)
T ss_pred             cchhhhhheeeeccCccceEEEEEEccCCc----------------------eeehhhcCHHHHHHHHHHHHHhhHHHHH
Confidence            456789999999999999999999988765                      5677766554   334457788999999


Q ss_pred             hhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCC
Q 024842          100 SLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLE  179 (262)
Q Consensus       100 ~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~  179 (262)
                      +.+.||+++++.+.+          .+....|++|+|..+|.|..++.    +..++++..++.++.|++.||+|||+++
T Consensus        99 ~~v~~PFlv~l~~t~----------~d~~~lymvmeyv~GGElFS~Lr----k~~rF~e~~arFYAAeivlAleylH~~~  164 (355)
T KOG0616|consen   99 KAVSHPFLVKLYGTF----------KDNSNLYMVMEYVPGGELFSYLR----KSGRFSEPHARFYAAEIVLALEYLHSLD  164 (355)
T ss_pred             hhccCceeEEEEEee----------ccCCeEEEEEeccCCccHHHHHH----hcCCCCchhHHHHHHHHHHHHHHHHhcC
Confidence            999999999999888          44788999999999999999987    5566999999999999999999999999


Q ss_pred             CCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC--ccCcccCCcccchhhhhhhhhhhhhcCcccchheehee
Q 024842          180 PPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF--ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRE  257 (262)
Q Consensus       180 ~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~--~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~  257 (262)
                        |++|||||+|||+++++    .+||+|||+|+......  ..|++.|.+||-+-+-|+...     -|.|++|+++||
T Consensus       165 --iiYRDLKPENiLlD~~G----~iKitDFGFAK~v~~rT~TlCGTPeYLAPEii~sk~ynka-----vDWWalGVLIYE  233 (355)
T KOG0616|consen  165 --IIYRDLKPENLLLDQNG----HIKITDFGFAKRVSGRTWTLCGTPEYLAPEIIQSKGYNKA-----VDWWALGVLIYE  233 (355)
T ss_pred             --eeeccCChHHeeeccCC----cEEEEeccceEEecCcEEEecCCccccChHHhhcCCCCcc-----hhHHHHHHHHHH
Confidence              99999999999999888    79999999999887664  469999999998877776644     478889999999


Q ss_pred             cccCC
Q 024842          258 LMFGR  262 (262)
Q Consensus       258 l~~G~  262 (262)
                      |+.|.
T Consensus       234 MlaG~  238 (355)
T KOG0616|consen  234 MLAGY  238 (355)
T ss_pred             HHcCC
Confidence            88884

>KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.1e-36  Score=249.24  Aligned_cols=186  Identities=31%  Similarity=0.437  Sum_probs=154.8

Q ss_pred             eecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHH-HHHHHHHHHHhh
Q 024842           22 WINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQ-LEMVREEIRVSS  100 (262)
Q Consensus        22 ~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~-~~~~~~E~~~l~  100 (262)
                      .+..++|.+.++||.|.||.||+|+...+++                      .||||+++..-..+ .-.-.+|+..|+
T Consensus         6 ~~~m~RY~~i~klGDGTfGsV~la~~~~~~~----------------------~VAIK~MK~Kf~s~ee~~nLREvksL~   63 (538)
T KOG0661|consen    6 VIFMDRYTVIRKLGDGTFGSVYLAKSKETGE----------------------LVAIKKMKKKFYSWEECMNLREVKSLR   63 (538)
T ss_pred             hhHHHHHHHHHHhcCCcceeEEEeeecCCCc----------------------eeeHHHHHhhhccHHHHHHHHHHHHHH
Confidence            3456899999999999999999999887765                      68999887763332 223468999999


Q ss_pred             hCC-CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCC
Q 024842          101 LFS-HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLE  179 (262)
Q Consensus       101 ~l~-h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~  179 (262)
                      +++ ||||+++.+++.+        . ...+|+||||+. ..|+++++.   ++..|++..+..|+.||+.||+|+|.+|
T Consensus        64 kln~hpniikL~Evi~d--------~-~~~L~fVfE~Md-~NLYqLmK~---R~r~fse~~irnim~QilqGL~hiHk~G  130 (538)
T KOG0661|consen   64 KLNPHPNIIKLKEVIRD--------N-DRILYFVFEFMD-CNLYQLMKD---RNRLFSESDIRNIMYQILQGLAHIHKHG  130 (538)
T ss_pred             hcCCCCcchhhHHHhhc--------c-CceEeeeHHhhh-hhHHHHHhh---cCCcCCHHHHHHHHHHHHHHHHHHHhcC
Confidence            998 9999999999852        2 228999999875 588888874   4677999999999999999999999999


Q ss_pred             CCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC----------------ccCcccCCcccchhhhhhhhhhhh
Q 024842          180 PPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF----------------ALGQRRYSCRNGLLSIVLHLSELL  243 (262)
Q Consensus       180 ~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~----------------~~~~~~~~~~~d~~s~g~~~~e~~  243 (262)
                        +.|||+||+|||+....    .+||+|||+|+...+..                .+.+..|+.|.|+|++||++.|++
T Consensus       131 --fFHRDlKPENiLi~~~~----~iKiaDFGLARev~SkpPYTeYVSTRWYRAPEvLLrs~~Ys~pvD~wA~GcI~aEl~  204 (538)
T KOG0661|consen  131 --FFHRDLKPENILISGND----VIKIADFGLAREVRSKPPYTEYVSTRWYRAPEVLLRSGYYSSPVDMWAVGCIMAELY  204 (538)
T ss_pred             --cccccCChhheEecccc----eeEecccccccccccCCCcchhhhcccccchHHhhhccccCCchHHHHHHHHHHHHH
Confidence              99999999999998544    69999999999876543                245667888889999999999998


Q ss_pred             hcCcc
Q 024842          244 SCGTV  248 (262)
Q Consensus       244 ~~~~v  248 (262)
                      +...+
T Consensus       205 sLrPL  209 (538)
T KOG0661|consen  205 SLRPL  209 (538)
T ss_pred             Hhccc
Confidence            86544

>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=1.5e-36  Score=250.10  Aligned_cols=184  Identities=25%  Similarity=0.320  Sum_probs=154.9

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc--hHHHHHHHHHHHHhhhC
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN--NEQLEMVREEIRVSSLF  102 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~--~~~~~~~~~E~~~l~~l  102 (262)
                      .+.|+.+++||+|.||.||+|++..+++                      .||+|++....  ........+||.+|++|
T Consensus       116 ~~~feki~kIGeGTyg~VYkAr~~~tgk----------------------ivALKKvr~d~~~~~~~~t~~REI~ILr~l  173 (560)
T KOG0600|consen  116 ADSFEKIEKIGEGTYGQVYKARDLETGK----------------------IVALKKVRFDNEKEGFPITAIREIKILRRL  173 (560)
T ss_pred             hHHHHHHHHhcCcchhheeEeeecccCc----------------------EEEEEEeecccCCCcchHHHHHHHHHHHhc
Confidence            5789999999999999999999998866                      68888877664  44455667999999999


Q ss_pred             CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCe
Q 024842          103 SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPY  182 (262)
Q Consensus       103 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~i  182 (262)
                      .||||+++.+...+        ...+.+|+|+||+.. +|.-++.   +..-.|++.+++.++.||+.||+|||.++  |
T Consensus       174 ~HpNIikL~eivt~--------~~~~siYlVFeYMdh-DL~GLl~---~p~vkft~~qIKc~mkQLl~Gl~~cH~~g--v  239 (560)
T KOG0600|consen  174 DHPNIIKLEEIVTS--------KLSGSIYLVFEYMDH-DLSGLLS---SPGVKFTEPQIKCYMKQLLEGLEYCHSRG--V  239 (560)
T ss_pred             CCCcccceeeEEEe--------cCCceEEEEEecccc-hhhhhhc---CCCcccChHHHHHHHHHHHHHHHHHhhcC--e
Confidence            99999999998753        235789999999875 5555553   34556999999999999999999999999  9


Q ss_pred             eecCCCCCcEEEecCCCCCCceEEeeccceeeccccC------------------ccCcccCCcccchhhhhhhhhhhhh
Q 024842          183 AHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF------------------ALGQRRYSCRNGLLSIVLHLSELLS  244 (262)
Q Consensus       183 vH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~------------------~~~~~~~~~~~d~~s~g~~~~e~~~  244 (262)
                      +|||||..||||+.++    .+||+|||+|..+....                  .+|...|+...|+||.||++.|++.
T Consensus       240 lHRDIK~SNiLidn~G----~LKiaDFGLAr~y~~~~~~~~T~rVvTLWYRpPELLLG~t~Yg~aVDlWS~GCIl~El~~  315 (560)
T KOG0600|consen  240 LHRDIKGSNILIDNNG----VLKIADFGLARFYTPSGSAPYTSRVVTLWYRPPELLLGATSYGTAVDLWSVGCILAELFL  315 (560)
T ss_pred             eeccccccceEEcCCC----CEEeccccceeeccCCCCcccccceEEeeccChHHhcCCcccccceeehhhhHHHHHHHc
Confidence            9999999999998887    79999999999765432                  3678889999999999999999987


Q ss_pred             cCcc
Q 024842          245 CGTV  248 (262)
Q Consensus       245 ~~~v  248 (262)
                      ...|
T Consensus       316 gkPI  319 (560)
T KOG0600|consen  316 GKPI  319 (560)
T ss_pred             CCCC
Confidence            5433

>KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=4.2e-36  Score=251.02  Aligned_cols=194  Identities=24%  Similarity=0.351  Sum_probs=161.2

Q ss_pred             ecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc----ch-HHHHHHHHHHH
Q 024842           23 INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ----NN-EQLEMVREEIR   97 (262)
Q Consensus        23 ~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~----~~-~~~~~~~~E~~   97 (262)
                      ...+.|.+.+.||+|+||.|++|++..+++.+                      |+|.+...    .. ...+.+.+|+.
T Consensus        14 ~~~g~y~~~~~lG~GsfgkV~~a~~~~t~~~v----------------------AiKii~~~~~~~~~~~~~~~i~rEi~   71 (370)
T KOG0583|consen   14 LSIGKYELGRTLGSGSFGKVKLAKHRLTGEKV----------------------AIKIIDRKKVSSKSQKLDELIKREIS   71 (370)
T ss_pred             cccCceeeeeeecCCCCeeEEEeeeccCCCeE----------------------EEEEechhcccccccccchhhHHHHH
Confidence            44679999999999999999999999887654                      44432221    11 23355668999


Q ss_pred             HhhhCC-CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHH
Q 024842           98 VSSLFS-HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMH  176 (262)
Q Consensus        98 ~l~~l~-h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH  176 (262)
                      +++.+. ||||+++++++          ......|++|||+.+|+|.+++.    ..++++|..+..+++|+++|++|||
T Consensus        72 ~~~~~~~HpnI~~l~ev~----------~t~~~~~ivmEy~~gGdL~~~i~----~~g~l~E~~ar~~F~Qlisav~y~H  137 (370)
T KOG0583|consen   72 ILRRLRSHPNIIRLLEVF----------ATPTKIYIVMEYCSGGDLFDYIV----NKGRLKEDEARKYFRQLISAVAYCH  137 (370)
T ss_pred             HHHHhccCCCEeEEEEEE----------ecCCeEEEEEEecCCccHHHHHH----HcCCCChHHHHHHHHHHHHHHHHHH
Confidence            999999 99999999998          44666999999999999999987    4667999999999999999999999


Q ss_pred             cCCCCeeecCCCCCcEEEecC-CCCCCceEEeeccceeecc-c----cCccCcccCCcccchhhhh-hhhhhhhhcCccc
Q 024842          177 SLEPPYAHNDVKPGNILITCR-KGQPPLAILMDFGSARPAQ-S----KFALGQRRYSCRNGLLSIV-LHLSELLSCGTVR  249 (262)
Q Consensus       177 ~~~~~ivH~dikp~Nill~~~-~~~~~~~kl~Dfg~a~~~~-~----~~~~~~~~~~~~~d~~s~g-~~~~e~~~~~~v~  249 (262)
                      +.|  |+||||||+|||++.+ +    .+||+|||++.... .    ....|++.|++||-+-.-+ +.-    ...|||
T Consensus       138 ~~g--i~HRDLK~ENilld~~~~----~~Kl~DFG~s~~~~~~~~~l~t~cGsp~Y~aPEvl~~~~~Y~g----~~aDvW  207 (370)
T KOG0583|consen  138 SRG--IVHRDLKPENILLDGNEG----NLKLSDFGLSAISPGEDGLLKTFCGSPAYAAPEVLSGKGTYSG----KAADVW  207 (370)
T ss_pred             hCC--EeeCCCCHHHEEecCCCC----CEEEeccccccccCCCCCcccCCCCCcccCCHHHhCCCCCcCC----chhhhh
Confidence            999  9999999999999877 5    69999999999873 2    2347999999999886655 332    237999


Q ss_pred             chheeheecccCC
Q 024842          250 VIQILMRELMFGR  262 (262)
Q Consensus       250 ~~g~~~~~l~~G~  262 (262)
                      |+|+++|.|++|+
T Consensus       208 S~GViLy~ml~G~  220 (370)
T KOG0583|consen  208 SLGVILYVLLCGR  220 (370)
T ss_pred             hhHHHHHHHHhCC
Confidence            9999999999996

>KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair]

Probab=100.00  E-value=1.1e-35  Score=227.21  Aligned_cols=184  Identities=28%  Similarity=0.355  Sum_probs=154.4

Q ss_pred             CceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchH--HHHHHHHHHHHhhhCC
Q 024842           26 NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNE--QLEMVREEIRVSSLFS  103 (262)
Q Consensus        26 ~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~--~~~~~~~E~~~l~~l~  103 (262)
                      .+|...+.||+|.||.||+|++..+++                      .||+|++...+..  ..-...+|+..|+.++
T Consensus         2 ~rY~~~~~lGEG~~gvVyka~d~~t~~----------------------~VAIKKIkl~~~kdGi~~talREIK~Lqel~   59 (318)
T KOG0659|consen    2 DRYEKLEKLGEGTYGVVYKARDTETGK----------------------RVAIKKIKLGNAKDGINRTALREIKLLQELK   59 (318)
T ss_pred             chhhhhhhhcCcceEEEEEEEecCCCc----------------------EEEEEEeeccccccCccHHHHHHHHHHHHcc
Confidence            478889999999999999999998877                      5777777655322  2345678999999999


Q ss_pred             CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCee
Q 024842          104 HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYA  183 (262)
Q Consensus       104 h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~iv  183 (262)
                      |+||+.++++|          ...+...+|+||++ .+|...++.   +...++...++.++.+++.||+|||++.  |+
T Consensus        60 h~nIi~LiD~F----------~~~~~l~lVfEfm~-tdLe~vIkd---~~i~l~pa~iK~y~~m~LkGl~y~H~~~--Il  123 (318)
T KOG0659|consen   60 HPNIIELIDVF----------PHKSNLSLVFEFMP-TDLEVVIKD---KNIILSPADIKSYMLMTLKGLAYCHSKW--IL  123 (318)
T ss_pred             Ccchhhhhhhc----------cCCCceEEEEEecc-ccHHHHhcc---cccccCHHHHHHHHHHHHHHHHHHHhhh--hh
Confidence            99999999999          45677899999876 478877763   5567999999999999999999999999  99


Q ss_pred             ecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-----------------ccCcccCCcccchhhhhhhhhhhhhcC
Q 024842          184 HNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-----------------ALGQRRYSCRNGLLSIVLHLSELLSCG  246 (262)
Q Consensus       184 H~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-----------------~~~~~~~~~~~d~~s~g~~~~e~~~~~  246 (262)
                      ||||||.|+|++.++    .+||+|||+|+.+.++.                 ..|...|....|+||.||++.|++- +
T Consensus       124 HRDlKPnNLLis~~g----~lKiADFGLAr~f~~p~~~~~~~V~TRWYRAPELLfGsr~Yg~~VDmWavGCI~AELll-r  198 (318)
T KOG0659|consen  124 HRDLKPNNLLISSDG----QLKIADFGLARFFGSPNRIQTHQVVTRWYRAPELLFGSRQYGTGVDMWAVGCIFAELLL-R  198 (318)
T ss_pred             cccCCccceEEcCCC----cEEeecccchhccCCCCcccccceeeeeccChHHhccchhcCCcchhhhHHHHHHHHHc-c
Confidence            999999999999888    79999999999887543                 2477788888899999999999975 3


Q ss_pred             cccchh
Q 024842          247 TVRVIQ  252 (262)
Q Consensus       247 ~v~~~g  252 (262)
                      ..+..|
T Consensus       199 ~P~fpG  204 (318)
T KOG0659|consen  199 VPFFPG  204 (318)
T ss_pred             CCCCCC
Confidence            444444

>KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=2.1e-35  Score=238.23  Aligned_cols=195  Identities=24%  Similarity=0.291  Sum_probs=159.5

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCCC
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSH  104 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~h  104 (262)
                      ..+|...+.||+|+||.||++.+..+++                      ..|+|..........+.+.+|+.+|+.++|
T Consensus        16 ~~~~~~~~~lG~Gs~G~V~l~~~~~~g~----------------------~~AvK~v~~~~~~~~~~l~~Ei~iL~~l~~   73 (313)
T KOG0198|consen   16 ISNWSKGKLLGRGSFGSVYLATNKKTGE----------------------LMAVKSVELEDSPTSESLEREIRILSRLNH   73 (313)
T ss_pred             cchhhhhccccCccceEEEEEEecCCCc----------------------ceeeeeeecccchhHHHHHHHHHHHHhCCC
Confidence            4578999999999999999999886544                      567777665543336778999999999999


Q ss_pred             CCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeee
Q 024842          105 RNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAH  184 (262)
Q Consensus       105 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH  184 (262)
                      ||||+.++....        .....++++|||+.+|+|.+++...   +..++++.++.+++|++.||+|||+++  ++|
T Consensus        74 p~IV~~~G~~~~--------~~~~~~~i~mEy~~~GsL~~~~~~~---g~~l~E~~v~~ytr~iL~GL~ylHs~g--~vH  140 (313)
T KOG0198|consen   74 PNIVQYYGSSSS--------RENDEYNIFMEYAPGGSLSDLIKRY---GGKLPEPLVRRYTRQILEGLAYLHSKG--IVH  140 (313)
T ss_pred             CCEEeeCCcccc--------ccCeeeEeeeeccCCCcHHHHHHHc---CCCCCHHHHHHHHHHHHHHHHHHHhCC--Eec
Confidence            999999996421        1113689999999999999998732   226999999999999999999999999  999


Q ss_pred             cCCCCCcEEEec-CCCCCCceEEeeccceeeccc--------cCccCcccCCcccchhhhhhhhhhhhhcCcccchheeh
Q 024842          185 NDVKPGNILITC-RKGQPPLAILMDFGSARPAQS--------KFALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILM  255 (262)
Q Consensus       185 ~dikp~Nill~~-~~~~~~~~kl~Dfg~a~~~~~--------~~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~  255 (262)
                      |||||+|||++. ++    .+||+|||++.....        ....+++.|++||-+.. |....   ...||||+|+++
T Consensus       141 ~DiK~~NiLl~~~~~----~~KlaDFG~a~~~~~~~~~~~~~~~~~Gtp~~maPEvi~~-g~~~~---~~sDiWSlGCtV  212 (313)
T KOG0198|consen  141 CDIKPANILLDPSNG----DVKLADFGLAKKLESKGTKSDSELSVQGTPNYMAPEVIRN-GEVAR---RESDIWSLGCTV  212 (313)
T ss_pred             cCcccceEEEeCCCC----eEEeccCccccccccccccccccccccCCccccCchhhcC-CCcCC---ccchhhhcCCEE
Confidence            999999999987 34    699999999987662        23478899999998865 32211   247999999999


Q ss_pred             eecccCC
Q 024842          256 RELMFGR  262 (262)
Q Consensus       256 ~~l~~G~  262 (262)
                      .||+||+
T Consensus       213 vEM~Tg~  219 (313)
T KOG0198|consen  213 VEMLTGK  219 (313)
T ss_pred             EeccCCC
Confidence            9999984

>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]

Probab=100.00  E-value=5.9e-36  Score=248.26  Aligned_cols=192  Identities=23%  Similarity=0.335  Sum_probs=161.2

Q ss_pred             ecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc---chHHHHHHHHHHHHh
Q 024842           23 INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ---NNEQLEMVREEIRVS   99 (262)
Q Consensus        23 ~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~---~~~~~~~~~~E~~~l   99 (262)
                      +..++|++++.||+|+||.||+|+.+.|++                      .+|+|+++..   ...+......|-.+|
T Consensus       138 ~~~~DFe~Lk~IgkGAfGeVrLarKk~Tg~----------------------iyAmK~LkKS~M~~~~Qv~hV~aERdiL  195 (550)
T KOG0605|consen  138 LSLDDFELLKVIGKGAFGEVRLARKKDTGE----------------------IYAMKILKKSEMLKKNQVEHVRAERDIL  195 (550)
T ss_pred             CCcccchhheeeccccceeEEEEEEccCCc----------------------EEeeecccHHHHHhhhhHHHHHHHHHHh
Confidence            456899999999999999999999998877                      5777766554   445567788899999


Q ss_pred             hhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCC
Q 024842          100 SLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLE  179 (262)
Q Consensus       100 ~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~  179 (262)
                      ....+|.||+++-.|          ++...+|++|||++||++..++.    +...+++..++.++.+++.|+.-+|+.|
T Consensus       196 ~~~ds~~vVKLyYsF----------QD~~~LYLiMEylPGGD~mTLL~----~~~~L~e~~arfYiaE~vlAI~~iH~~g  261 (550)
T KOG0605|consen  196 AEVDSPWVVKLYYSF----------QDKEYLYLIMEYLPGGDMMTLLM----RKDTLTEDWARFYIAETVLAIESIHQLG  261 (550)
T ss_pred             hhcCCCcEEEEEEEe----------cCCCeeEEEEEecCCccHHHHHH----hcCcCchHHHHHHHHHHHHHHHHHHHcC
Confidence            999999999999988          56889999999999999999987    6777999999999999999999999999


Q ss_pred             CCeeecCCCCCcEEEecCCCCCCceEEeeccceeecccc------------------------------C----------
Q 024842          180 PPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSK------------------------------F----------  219 (262)
Q Consensus       180 ~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~------------------------------~----------  219 (262)
                        ++||||||+|+||+..|    .+||+|||+|.-+...                              .          
T Consensus       262 --yIHRDIKPdNlLiD~~G----HiKLSDFGLs~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (550)
T KOG0605|consen  262 --YIHRDIKPDNLLIDAKG----HIKLSDFGLSTGLDKKHRIESYRLDEQMQINLSEAKPSDFPKFNTPRSTMSRREQLQ  335 (550)
T ss_pred             --cccccCChhheeecCCC----CEeeccccccchhhhhhhhhhhcchhhhhhhhccCCCccccccccccchhhHHHHHH
Confidence              99999999999999888    7999999999732210                              0          


Q ss_pred             ------------ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecccC
Q 024842          220 ------------ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMFG  261 (262)
Q Consensus       220 ------------~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~G  261 (262)
                                  ..|+|.|.+||-+..-|+...     .|.||+|++||||+.|
T Consensus       336 ~w~~nrr~~a~StVGTPDYiAPEVll~kgY~~~-----cDwWSLG~ImyEmLvG  384 (550)
T KOG0605|consen  336 TWKRNRRQLAYSTVGTPDYIAPEVLLGKGYGKE-----CDWWSLGCIMYEMLVG  384 (550)
T ss_pred             HHHhhhhhhhhcccCCccccchHHHhcCCCCcc-----ccHHHHHHHHHHHHhC
Confidence                        146666666666655554322     5899999999999988

>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]

Probab=100.00  E-value=3.5e-36  Score=249.78  Aligned_cols=192  Identities=23%  Similarity=0.323  Sum_probs=150.7

Q ss_pred             cCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc---chHHHHHHHHHHHHhh
Q 024842           24 NENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ---NNEQLEMVREEIRVSS  100 (262)
Q Consensus        24 ~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~---~~~~~~~~~~E~~~l~  100 (262)
                      ...+|++++.||.|+|++|++|++..+++                      .||+|+....   .....+-...|-.+|.
T Consensus        71 ~~~DF~Fg~~lGeGSYStV~~A~~~~t~k----------------------eYAiKVl~K~~Iike~KvkYV~~Ek~~l~  128 (604)
T KOG0592|consen   71 TPNDFKFGKILGEGSYSTVVLAREKATGK----------------------EYAIKVLDKRYIIKEKKVKYVTREKEALT  128 (604)
T ss_pred             ChhhcchhheeccccceeEEEeeecCCCc----------------------eeeHhhhhHHHHHhhcccchhhHHHHHHH
Confidence            35789999999999999999999988766                      5666655322   1222344567788888


Q ss_pred             hC-CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCC
Q 024842          101 LF-SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLE  179 (262)
Q Consensus       101 ~l-~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~  179 (262)
                      +| .||.|++++..|          .+...+|++++|.++|+|.+++.    +-+.+++...+.++.+|+.||+|||++|
T Consensus       129 ~L~~hPgivkLy~TF----------QD~~sLYFvLe~A~nGdll~~i~----K~Gsfde~caR~YAAeIldAleylH~~G  194 (604)
T KOG0592|consen  129 QLSGHPGIVKLYFTF----------QDEESLYFVLEYAPNGDLLDLIK----KYGSFDETCARFYAAEILDALEYLHSNG  194 (604)
T ss_pred             HhhCCCCeEEEEEEe----------ecccceEEEEEecCCCcHHHHHH----HhCcchHHHHHHHHHHHHHHHHHHHhcC
Confidence            88 799999999998          55788999999999999999998    5566999999999999999999999999


Q ss_pred             CCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccCc------------------cCcccCCcccchhhhhhhhhh
Q 024842          180 PPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKFA------------------LGQRRYSCRNGLLSIVLHLSE  241 (262)
Q Consensus       180 ~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~~------------------~~~~~~~~~~d~~s~g~~~~e  241 (262)
                        ||||||||+|||++.++    .++|+|||.|+.+++...                  .|+..|-+||-+-     -..
T Consensus       195 --IIHRDlKPENILLd~dm----hikITDFGsAK~l~~~~~~~~~~~~~~~a~s~~~SFVGTAeYVSPElL~-----~~~  263 (604)
T KOG0592|consen  195 --IIHRDLKPENILLDKDG----HIKITDFGSAKILSPSQKSQENPVDPNQASSRRSSFVGTAEYVSPELLN-----DSP  263 (604)
T ss_pred             --ceeccCChhheeEcCCC----cEEEeeccccccCChhhccccCccCcccccCcccceeeeecccCHHHhc-----CCC
Confidence              99999999999999988    799999999998764432                  2333444433221     111


Q ss_pred             hhhcCcccchheeheecccCC
Q 024842          242 LLSCGTVRVIQILMRELMFGR  262 (262)
Q Consensus       242 ~~~~~~v~~~g~~~~~l~~G~  262 (262)
                      +....|+|+||+++|+|+.|.
T Consensus       264 ~~~~sDiWAlGCilyQmlaG~  284 (604)
T KOG0592|consen  264 AGPSSDLWALGCILYQMLAGQ  284 (604)
T ss_pred             CCcccchHHHHHHHHHHhcCC
Confidence            122467888888888888774

>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1e-35  Score=248.14  Aligned_cols=194  Identities=25%  Similarity=0.326  Sum_probs=158.6

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCCC
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSH  104 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~h  104 (262)
                      .++|.-...||+|+||.||+|....+                       ..+|+|+..........+|.+|+.++..++|
T Consensus        74 T~~Fs~~~~ig~Ggfg~VYkG~l~~~-----------------------~~vAVK~~~~~~~~~~~eF~~Ei~~ls~l~H  130 (361)
T KOG1187|consen   74 TNNFSESNLIGEGGFGTVYKGVLSDG-----------------------TVVAVKRLSSNSGQGEREFLNEVEILSRLRH  130 (361)
T ss_pred             HhCCchhcceecCCCeEEEEEEECCC-----------------------CEEEEEEecCCCCcchhHHHHHHHHHhcCCC
Confidence            47888889999999999999997643                       4789997766544313559999999999999


Q ss_pred             CCccchhhhhHHHhhhccCCCCcc-eeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcC-CCCe
Q 024842          105 RNLLPLLDHAIIAVKANQEGSWKH-EAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSL-EPPY  182 (262)
Q Consensus       105 ~~i~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~-~~~i  182 (262)
                      ||+++++++|.          +.+ ...+|+||+..|+|.+.+......  +++|.....|+.+++.||+|||+. .++|
T Consensus       131 ~Nlv~LlGyC~----------e~~~~~~LVYEym~nGsL~d~L~~~~~~--~L~W~~R~kIa~g~A~gL~yLH~~~~~~i  198 (361)
T KOG1187|consen  131 PNLVKLLGYCL----------EGGEHRLLVYEYMPNGSLEDHLHGKKGE--PLDWETRLKIALGAARGLAYLHEGCPPPI  198 (361)
T ss_pred             cCcccEEEEEe----------cCCceEEEEEEccCCCCHHHHhCCCCCC--CCCHHHHHHHHHHHHHHHHHHccCCCCCE
Confidence            99999999984          244 599999999999999988632211  789999999999999999999994 3489


Q ss_pred             eecCCCCCcEEEecCCCCCCceEEeeccceeeccc-cCc-----cCcccCCcccchhhhhhhhhhhhhcCcccchheehe
Q 024842          183 AHNDVKPGNILITCRKGQPPLAILMDFGSARPAQS-KFA-----LGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMR  256 (262)
Q Consensus       183 vH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~-~~~-----~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~  256 (262)
                      +||||||.|||++.+-    .+||+|||+|...+. ...     .++..|.+||.+..     ..+....||||||+++.
T Consensus       199 iHrDiKssNILLD~~~----~aKlsDFGLa~~~~~~~~~~~~~~~gt~gY~~PEy~~~-----g~lt~KsDVySFGVvll  269 (361)
T KOG1187|consen  199 IHRDIKSSNILLDEDF----NAKLSDFGLAKLGPEGDTSVSTTVMGTFGYLAPEYAST-----GKLTEKSDVYSFGVVLL  269 (361)
T ss_pred             ecCCCCHHHeeECCCC----CEEccCccCcccCCccccceeeecCCCCccCChhhhcc-----CCcCcccccccchHHHH
Confidence            9999999999998776    699999999976654 222     56677888777644     23344789999999999


Q ss_pred             ecccCC
Q 024842          257 ELMFGR  262 (262)
Q Consensus       257 ~l~~G~  262 (262)
                      |+++||
T Consensus       270 Elitgr  275 (361)
T KOG1187|consen  270 ELITGR  275 (361)
T ss_pred             HHHhCC
Confidence            999997

>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]

Probab=100.00  E-value=6.4e-36  Score=235.20  Aligned_cols=184  Identities=24%  Similarity=0.377  Sum_probs=156.6

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchH--HHHHHHHHHHHhhhC
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNE--QLEMVREEIRVSSLF  102 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~--~~~~~~~E~~~l~~l  102 (262)
                      -++|+.+..|++|.||.||+|++..+++                      .||+|+++.....  ..-...+|+.+|..+
T Consensus        75 v~efe~lnrI~EGtyGiVYRakdk~t~e----------------------IVALKr~kmekek~GFPItsLREIniLl~~  132 (419)
T KOG0663|consen   75 VEEFEKLNRIEEGTYGVVYRAKDKKTDE----------------------IVALKRLKMEKEKEGFPITSLREINILLKA  132 (419)
T ss_pred             HHHHHHHhhcccCcceeEEEeccCCcce----------------------eEEeeecccccccCCCcchhHHHHHHHHhc
Confidence            4689999999999999999999998877                      6788887765322  223456899999999


Q ss_pred             CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCe
Q 024842          103 SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPY  182 (262)
Q Consensus       103 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~i  182 (262)
                      +||||+.+-.+.+        +..-+..|++|+|+.. +|..++..   -..+|...+++.++.|++.|++|||.+.  |
T Consensus       133 ~H~NIV~vkEVVv--------G~~~d~iy~VMe~~Eh-DLksl~d~---m~q~F~~~evK~L~~QlL~glk~lH~~w--i  198 (419)
T KOG0663|consen  133 RHPNIVEVKEVVV--------GSNMDKIYIVMEYVEH-DLKSLMET---MKQPFLPGEVKTLMLQLLRGLKHLHDNW--I  198 (419)
T ss_pred             CCCCeeeeEEEEe--------ccccceeeeeHHHHHh-hHHHHHHh---ccCCCchHHHHHHHHHHHHHHHHHhhce--e
Confidence            9999999988875        4667889999998875 67777663   3457999999999999999999999999  9


Q ss_pred             eecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-----------------ccCcccCCcccchhhhhhhhhhhhhc
Q 024842          183 AHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-----------------ALGQRRYSCRNGLLSIVLHLSELLSC  245 (262)
Q Consensus       183 vH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-----------------~~~~~~~~~~~d~~s~g~~~~e~~~~  245 (262)
                      +||||||+|+|++..+    .+||+|||+|+.+.++.                 ..+.+.|+.+.||||+||++.|++..
T Consensus       199 lHRDLK~SNLLm~~~G----~lKiaDFGLAR~ygsp~k~~T~lVVTLWYRaPELLLG~~tyst~iDMWSvGCI~aE~l~~  274 (419)
T KOG0663|consen  199 LHRDLKTSNLLLSHKG----ILKIADFGLAREYGSPLKPYTPLVVTLWYRAPELLLGAKTYSTAVDMWSVGCIFAELLTQ  274 (419)
T ss_pred             EecccchhheeeccCC----cEEecccchhhhhcCCcccCcceEEEeeecCHHHhcCCcccCcchhhhhHHHHHHHHHhc
Confidence            9999999999998777    79999999999888763                 36888999999999999999999875


Q ss_pred             Ccc
Q 024842          246 GTV  248 (262)
Q Consensus       246 ~~v  248 (262)
                      ..+
T Consensus       275 kPl  277 (419)
T KOG0663|consen  275 KPL  277 (419)
T ss_pred             CCC
Confidence            443

>KOG0597 consensus Serine-threonine protein kinase FUSED [General function prediction only]

Probab=100.00  E-value=1.4e-35  Score=247.44  Aligned_cols=184  Identities=25%  Similarity=0.365  Sum_probs=153.6

Q ss_pred             CceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc--chHHHHHHHHHHHHhhhCC
Q 024842           26 NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ--NNEQLEMVREEIRVSSLFS  103 (262)
Q Consensus        26 ~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~--~~~~~~~~~~E~~~l~~l~  103 (262)
                      ++|.+.+.||+|+||.||+|+...+.+                      .||+|.+...  ...+.+.+.+|+++++.++
T Consensus         2 e~yhv~e~iG~Gsfg~VYKgrrK~t~~----------------------~vAik~i~K~gr~~k~l~~l~~ev~i~r~lk   59 (808)
T KOG0597|consen    2 EQYHVYEMIGEGSFGRVYKGRRKYTIQ----------------------VVAIKFIDKSGRNEKELKNLRQEVRILRSLK   59 (808)
T ss_pred             cchhHHHHhcCCccceeeeccccccee----------------------EEEEEEehhcCCchHHHHHHHHHHHHHHhcC
Confidence            579999999999999999999988866                      5666655443  3445678899999999999


Q ss_pred             CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCee
Q 024842          104 HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYA  183 (262)
Q Consensus       104 h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~iv  183 (262)
                      ||||+.++++|          +...+.|+|+||+.+ +|..++.    ..+.++|+.+..++.++++||.|||+++  |+
T Consensus        60 Hpniv~m~esf----------Et~~~~~vVte~a~g-~L~~il~----~d~~lpEe~v~~~a~~LVsaL~yLhs~r--il  122 (808)
T KOG0597|consen   60 HPNIVEMLESF----------ETSAHLWVVTEYAVG-DLFTILE----QDGKLPEEQVRAIAYDLVSALYYLHSNR--IL  122 (808)
T ss_pred             CcchhhHHHhh----------cccceEEEEehhhhh-hHHHHHH----hccCCCHHHHHHHHHHHHHHHHHHHhcC--cc
Confidence            99999999999          567889999999887 9998887    5666999999999999999999999998  99


Q ss_pred             ecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-----ccCcccCCccc-----------chhhhhhhhhhhhhcCc
Q 024842          184 HNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-----ALGQRRYSCRN-----------GLLSIVLHLSELLSCGT  247 (262)
Q Consensus       184 H~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~~~~~~~~-----------d~~s~g~~~~e~~~~~~  247 (262)
                      |||+||.|||++..+    .+|++|||+|+-+..+.     ..|++.|++||           |+||+||+++|+++ |.
T Consensus       123 hrd~kPqniLl~~~~----~~KlcdFg~Ar~m~~~t~vltsikGtPlYmAPElv~e~pyd~~sDlWslGcilYE~~~-G~  197 (808)
T KOG0597|consen  123 HRDMKPQNILLEKGG----TLKLCDFGLARAMSTNTSVLTSIKGTPLYMAPELVEEQPYDHTSDLWSLGCILYELYV-GQ  197 (808)
T ss_pred             cccCCcceeeecCCC----ceeechhhhhhhcccCceeeeeccCcccccCHHHHcCCCccchhhHHHHHHHHHHHhc-CC
Confidence            999999999998777    79999999999877654     36888898887           56666666666665 34


Q ss_pred             ccchhe
Q 024842          248 VRVIQI  253 (262)
Q Consensus       248 v~~~g~  253 (262)
                      .+++.-
T Consensus       198 PPF~a~  203 (808)
T KOG0597|consen  198 PPFYAR  203 (808)
T ss_pred             CCchHH
Confidence            444333

>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]

Probab=100.00  E-value=3.4e-35  Score=243.60  Aligned_cols=203  Identities=23%  Similarity=0.244  Sum_probs=163.5

Q ss_pred             CceeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccch--HHHHHHHHHH
Q 024842           19 GDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNN--EQLEMVREEI   96 (262)
Q Consensus        19 ~~~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~--~~~~~~~~E~   96 (262)
                      ....++.....+.+.||.|+||+||+|.+..+                       ..+|+|++.....  ...+.|.+|+
T Consensus        34 ~~~~i~~~~l~~~~~iG~G~~g~V~~~~~~g~-----------------------~~vavK~~~~~~~~~~~~~~f~~E~   90 (362)
T KOG0192|consen   34 PEEEIDPDELPIEEVLGSGSFGTVYKGKWRGT-----------------------DVVAVKIISDPDFDDESRKAFRREA   90 (362)
T ss_pred             cceecChHHhhhhhhcccCCceeEEEEEeCCc-----------------------eeEEEEEecchhcChHHHHHHHHHH
Confidence            45566777888889999999999999999754                       1278887765432  2256899999


Q ss_pred             HHhhhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHH
Q 024842           97 RVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMH  176 (262)
Q Consensus        97 ~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH  176 (262)
                      .++..++||||+++++++..         ......+||||+++|+|.+++...  ....++...+..++.+|+.|+.|||
T Consensus        91 ~il~~l~HpNIV~f~G~~~~---------~~~~~~iVtEy~~~GsL~~~l~~~--~~~~l~~~~~l~~aldiArGm~YLH  159 (362)
T KOG0192|consen   91 SLLSRLRHPNIVQFYGACTS---------PPGSLCIVTEYMPGGSLSVLLHKK--RKRKLPLKVRLRIALDIARGMEYLH  159 (362)
T ss_pred             HHHHhCCCCCeeeEEEEEcC---------CCCceEEEEEeCCCCcHHHHHhhc--ccCCCCHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999841         122689999999999999998743  3566999999999999999999999


Q ss_pred             cCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeecccc-----CccCcccCCcccchhhhhhhhhhhhhcCcccch
Q 024842          177 SLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSK-----FALGQRRYSCRNGLLSIVLHLSELLSCGTVRVI  251 (262)
Q Consensus       177 ~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~-----~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~  251 (262)
                      ++++ ||||||||+|||++.+.   ..+||+|||+++.....     ...|++.|++||-+-..   ...+..+.|||||
T Consensus       160 ~~~~-iIHrDLK~~NiLv~~~~---~~~KI~DFGlsr~~~~~~~~~~~~~GT~~wMAPEv~~~~---~~~~~~K~DvySF  232 (362)
T KOG0192|consen  160 SEGP-IIHRDLKSDNILVDLKG---KTLKIADFGLSREKVISKTSMTSVAGTYRWMAPEVLRGE---KSPYTEKSDVYSF  232 (362)
T ss_pred             cCCC-eeecccChhhEEEcCCC---CEEEECCCccceeeccccccccCCCCCccccChhhhcCC---CCcCCccchhhhH
Confidence            9765 89999999999998664   26999999999865532     14688889998877533   1223346899999


Q ss_pred             heeheecccCC
Q 024842          252 QILMRELMFGR  262 (262)
Q Consensus       252 g~~~~~l~~G~  262 (262)
                      |+++|||+||+
T Consensus       233 gIvlWEl~t~~  243 (362)
T KOG0192|consen  233 GIVLWELLTGE  243 (362)
T ss_pred             HHHHHHHHHCC
Confidence            99999999985

>KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=8.5e-36  Score=240.27  Aligned_cols=191  Identities=22%  Similarity=0.324  Sum_probs=165.1

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhc---cchHHHHHHHHHHHHhhh
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLI---QNNEQLEMVREEIRVSSL  101 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~---~~~~~~~~~~~E~~~l~~  101 (262)
                      ..+|++.+.||+|.||.|-+|.....++                      .||+|.+..   ...++.-.+.+|++++..
T Consensus        52 kHRyE~~etLGkGTYGKVk~A~e~~sgR----------------------~VAiKsIrKdkIkdeqDlvhIRREIeIMSs  109 (668)
T KOG0611|consen   52 KHRYEITETLGKGTYGKVKLAYEHKSGR----------------------EVAIKSIRKDKIKDEQDLVHIRREIEIMSS  109 (668)
T ss_pred             hhHHHHHHHhcCCcccceeehhhccCCc----------------------EeehhhhhhhhcccHHHHHHHHHHHHHHhh
Confidence            3589999999999999999999876655                      567766544   456667788999999999


Q ss_pred             CCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCC
Q 024842          102 FSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPP  181 (262)
Q Consensus       102 l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~  181 (262)
                      |+||||+.++.+|          +..+...++|||..+|.|++++.    ....+++.++..+++||++|+.|+|.++  
T Consensus       110 LNHPhII~IyEVF----------ENkdKIvivMEYaS~GeLYDYiS----er~~LsErEaRhfFRQIvSAVhYCHknr--  173 (668)
T KOG0611|consen  110 LNHPHIIQIYEVF----------ENKDKIVIVMEYASGGELYDYIS----ERGSLSEREARHFFRQIVSAVHYCHKNR--  173 (668)
T ss_pred             cCCCceeehhhhh----------cCCceEEEEEEecCCccHHHHHH----HhccccHHHHHHHHHHHHHHHHHHhhcc--
Confidence            9999999999999          66889999999999999999998    4455999999999999999999999998  


Q ss_pred             eeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC----ccCcccCCcccchhhhhhhhhhhhhcCcccchheehee
Q 024842          182 YAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRE  257 (262)
Q Consensus       182 ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~  257 (262)
                      ++|||||.+|||+++++    .+||+|||++-.+....    ..|++.|++|+-+.+-.+.-+|    -|-|++|+++|-
T Consensus       174 VvHRDLKLENILLD~N~----NiKIADFGLSNly~~~kfLqTFCGSPLYASPEIvNG~PY~GPE----VDsWsLGvLLYt  245 (668)
T KOG0611|consen  174 VVHRDLKLENILLDQNN----NIKIADFGLSNLYADKKFLQTFCGSPLYASPEIVNGTPYKGPE----VDSWSLGVLLYT  245 (668)
T ss_pred             ceecccchhheeecCCC----CeeeeccchhhhhccccHHHHhcCCcccCCccccCCCCCCCCc----cchhhHHHHHHH
Confidence            99999999999999888    59999999998876543    3688899999888777776666    467888888888


Q ss_pred             cccC
Q 024842          258 LMFG  261 (262)
Q Consensus       258 l~~G  261 (262)
                      |++|
T Consensus       246 LVyG  249 (668)
T KOG0611|consen  246 LVYG  249 (668)
T ss_pred             Hhhc
Confidence            8776

>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=3.7e-35  Score=243.94  Aligned_cols=199  Identities=24%  Similarity=0.319  Sum_probs=160.9

Q ss_pred             CCceeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHH
Q 024842           18 GGDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIR   97 (262)
Q Consensus        18 ~~~~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~   97 (262)
                      .....++.+.+++++.||+|.||.||+|++....                       .+++|.++...- ..+.|.+|++
T Consensus       198 ~d~wei~r~~l~l~~~LG~G~FG~V~~g~~~~~~-----------------------~vavk~ik~~~m-~~~~f~~Ea~  253 (468)
T KOG0197|consen  198 RDPWEIPREELKLIRELGSGQFGEVWLGKWNGST-----------------------KVAVKTIKEGSM-SPEAFLREAQ  253 (468)
T ss_pred             cCCeeecHHHHHHHHHhcCCccceEEEEEEcCCC-----------------------cccceEEecccc-ChhHHHHHHH
Confidence            3344566778899999999999999999997643                       467776665422 2367889999


Q ss_pred             HhhhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHc
Q 024842           98 VSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHS  177 (262)
Q Consensus        98 ~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~  177 (262)
                      ++++|+|+||+++++++.          ..+.+|+||||+..|+|.+++..  ..+..+.....+.++.||+.|++||++
T Consensus       254 iMk~L~H~~lV~l~gV~~----------~~~piyIVtE~m~~GsLl~yLr~--~~~~~l~~~~Ll~~a~qIaeGM~YLes  321 (468)
T KOG0197|consen  254 IMKKLRHEKLVKLYGVCT----------KQEPIYIVTEYMPKGSLLDYLRT--REGGLLNLPQLLDFAAQIAEGMAYLES  321 (468)
T ss_pred             HHHhCcccCeEEEEEEEe----------cCCceEEEEEecccCcHHHHhhh--cCCCccchHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999983          34579999999999999999874  235669999999999999999999999


Q ss_pred             CCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccCc-----------------cCcccCCcccchhhhhhhhh
Q 024842          178 LEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKFA-----------------LGQRRYSCRNGLLSIVLHLS  240 (262)
Q Consensus       178 ~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~~-----------------~~~~~~~~~~d~~s~g~~~~  240 (262)
                      ++  +|||||.+.|||++.+.    .+||+|||+|+...++..                 .....|+..+|+||+|+.++
T Consensus       322 ~~--~IHRDLAARNiLV~~~~----~vKIsDFGLAr~~~d~~Y~~~~~~kfPIkWtAPEa~~~~~FS~kSDVWSFGVlL~  395 (468)
T KOG0197|consen  322 KN--YIHRDLAARNILVDEDL----VVKISDFGLARLIGDDEYTASEGGKFPIKWTAPEALNYGKFSSKSDVWSFGVLLW  395 (468)
T ss_pred             CC--ccchhhhhhheeeccCc----eEEEcccccccccCCCceeecCCCCCCceecCHHHHhhCCcccccceeehhhhHH
Confidence            99  99999999999998777    899999999996544332                 23334566668888888888


Q ss_pred             hhhhcCcccchheeheec
Q 024842          241 ELLSCGTVRVIQILMREL  258 (262)
Q Consensus       241 e~~~~~~v~~~g~~~~~l  258 (262)
                      |+++.|.++.-|....+.
T Consensus       396 E~fT~G~~py~~msn~ev  413 (468)
T KOG0197|consen  396 ELFTYGRVPYPGMSNEEV  413 (468)
T ss_pred             HHhccCCCCCCCCCHHHH
Confidence            888888877777766553

>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]

Probab=100.00  E-value=1.6e-33  Score=246.00  Aligned_cols=212  Identities=27%  Similarity=0.459  Sum_probs=165.6

Q ss_pred             ccCCCCCceeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHH
Q 024842           13 DSVNGGGDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMV   92 (262)
Q Consensus        13 ~~~~~~~~~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~   92 (262)
                      +...-|..+.+...++++.+.|.+|||+.||+|++...+                      ..||+|++...+....+.+
T Consensus        24 ~~~~~G~~~~Vg~~~v~V~~vLAEGGFa~VYla~~~~~~----------------------~~~AlKrm~~~de~~L~~v   81 (738)
T KOG1989|consen   24 ENYFVGQTFTVGSHRVTVEKVLAEGGFAQVYLAQDVKGG----------------------KKYALKRMYVNDEEALNAV   81 (738)
T ss_pred             ccCCCceEEEECCEEEEEEEEEccCCcEEEEEEEecCCC----------------------ceeeeeeeecCCHHHHHHH
Confidence            344556677888999999999999999999999987653                      3799999999888889999


Q ss_pred             HHHHHHhhhCC-CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHH
Q 024842           93 REEIRVSSLFS-HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAG  171 (262)
Q Consensus        93 ~~E~~~l~~l~-h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~  171 (262)
                      .+|+.+++.|+ |+|||.+++....   ........-+.++.||||.+|.|-+++..+.+.+  +++.++++|+.+++.|
T Consensus        82 ~~EI~~MK~L~gh~nIV~yidss~~---~~~~~~~~~EvllLmEyC~gg~Lvd~mn~Rlq~~--lte~eVLkIf~dv~~A  156 (738)
T KOG1989|consen   82 KREIDIMKLLSGHKNIVSYIDSSAI---NRSSNNGVWEVLLLMEYCKGGSLVDFMNTRLQTR--LTEDEVLKIFYDVCEA  156 (738)
T ss_pred             HHHHHHHHHhcCCCceeeEeccccc---cccCCCceeEEEeehhhccCCcHHHHHHHHHhcc--CChHHHHHHHHHHHHH
Confidence            99999999997 9999999994211   1111122456889999999999999998776655  9999999999999999


Q ss_pred             HHHHHcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC--------------ccCcccCCcccc--hhhh
Q 024842          172 LKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF--------------ALGQRRYSCRNG--LLSI  235 (262)
Q Consensus       172 l~~lH~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~--------------~~~~~~~~~~~d--~~s~  235 (262)
                      +.+||...+||||||||.+||||+.++    ..||||||.|.......              ...++.|.+||-  +|+-
T Consensus       157 Va~mH~~~pPiIHRDLKiENvLls~~g----~~KLCDFGSatt~~~~~~~~~e~~~ve~eI~k~TTp~YRsPEMIDlysg  232 (738)
T KOG1989|consen  157 VAAMHYLKPPIIHRDLKIENVLLSADG----NYKLCDFGSATTKILSPTSAQEVNYVEEEIEKYTTPQYRSPEMIDLYSG  232 (738)
T ss_pred             HHHHhcCCCccchhhhhhhheEEcCCC----CEEeCcccccccccCCCccHHHHHHHHHHHHhhCCccccChHHHhhhcC
Confidence            999999999999999999999999888    69999999988532111              257777877762  2221


Q ss_pred             hhhhhhhhhcCcccchheeheecc
Q 024842          236 VLHLSELLSCGTVRVIQILMRELM  259 (262)
Q Consensus       236 g~~~~e~~~~~~v~~~g~~~~~l~  259 (262)
                      -    .+-.+.|||++|+++|.|.
T Consensus       233 ~----pI~eKsDIWALGclLYkLC  252 (738)
T KOG1989|consen  233 L----PIGEKSDIWALGCLLYKLC  252 (738)
T ss_pred             C----CCcchhHHHHHHHHHHHHH
Confidence            1    1122355555555555543

>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

Probab=100.00  E-value=3.5e-34  Score=241.92  Aligned_cols=190  Identities=21%  Similarity=0.321  Sum_probs=152.6

Q ss_pred             CceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc---chHHHHHHHHHHHHhhhC
Q 024842           26 NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ---NNEQLEMVREEIRVSSLF  102 (262)
Q Consensus        26 ~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~---~~~~~~~~~~E~~~l~~l  102 (262)
                      ++|++.+.||+|+||.||+|++..+++                      .+|+|.+...   .......+..|+.++..+
T Consensus         1 ~~y~~~~~LG~G~~g~V~~~~~~~~~~----------------------~~aiK~~~~~~~~~~~~~~~~~~E~~il~~~   58 (363)
T cd05628           1 EDFESLKVIGRGAFGEVRLVQKKDTGH----------------------VYAMKILRKADMLEKEQVGHIRAERDILVEA   58 (363)
T ss_pred             CCceEeEEEEeCCCEEEEEEEECCCCC----------------------EEEEEEEEHHHHHHhhHHHHHHHHHHHHHhC
Confidence            479999999999999999999877655                      5777766432   233345678899999999


Q ss_pred             CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCe
Q 024842          103 SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPY  182 (262)
Q Consensus       103 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~i  182 (262)
                      +|+||+++++.+          ......|++|||+.+++|.+++.    ....+++..+..++.|++.||+|||+++  |
T Consensus        59 ~~~~iv~~~~~~----------~~~~~~~lv~E~~~gg~L~~~l~----~~~~l~~~~~~~~~~qi~~aL~~lH~~g--i  122 (363)
T cd05628          59 DSLWVVKMFYSF----------QDKLNLYLIMEFLPGGDMMTLLM----KKDTLTEEETQFYIAETVLAIDSIHQLG--F  122 (363)
T ss_pred             CCCCcceEEEEE----------ecCCeEEEEEcCCCCCcHHHHHH----hcCCCCHHHHHHHHHHHHHHHHHHHhCC--e
Confidence            999999999887          34667999999999999999886    4556999999999999999999999998  9


Q ss_pred             eecCCCCCcEEEecCCCCCCceEEeeccceeecccc----------------------------------------CccC
Q 024842          183 AHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSK----------------------------------------FALG  222 (262)
Q Consensus       183 vH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~----------------------------------------~~~~  222 (262)
                      +||||||+|||++.++    .+||+|||++......                                        ...+
T Consensus       123 vHrDlKp~NILi~~~~----~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G  198 (363)
T cd05628         123 IHRDIKPDNLLLDSKG----HVKLSDFGLCTGLKKAHRTEFYRNLNHSLPSDFTFQNMNSKRKAETWKRNRRQLAFSTVG  198 (363)
T ss_pred             EecCCCHHHeEECCCC----CEEEeeccCcccccccccccccccccccccccccccccccccccchhhhccccccccccC
Confidence            9999999999998776    6999999998754321                                        1235


Q ss_pred             cccCCcccchhhhhhhhhhhhhcCcccchheeheecccCC
Q 024842          223 QRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMFGR  262 (262)
Q Consensus       223 ~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~G~  262 (262)
                      ++.|.+||.+..-++     ....|+||+|+++|||++|+
T Consensus       199 t~~Y~aPE~~~~~~~-----~~~~DvwSlGvil~ell~G~  233 (363)
T cd05628         199 TPDYIAPEVFMQTGY-----NKLCDWWSLGVIMYEMLIGY  233 (363)
T ss_pred             CccccCHHHHcCCCC-----CCchhhhhhHHHHHHHHhCC
Confidence            666777765533221     23468999999999998885

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus

>KOG0588 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=5.3e-35  Score=247.76  Aligned_cols=191  Identities=24%  Similarity=0.337  Sum_probs=164.1

Q ss_pred             CceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc---chHHHHHHHHHHHHhhhC
Q 024842           26 NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ---NNEQLEMVREEIRVSSLF  102 (262)
Q Consensus        26 ~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~---~~~~~~~~~~E~~~l~~l  102 (262)
                      .-|++++.||.|+.|.|-+|++..||+..                      |||++...   .......+++|+.+++.+
T Consensus        12 GpwkLgkTLG~Gstg~vrlakh~~TGqla----------------------aiKii~k~~~~s~s~~~~IerEIviMkLi   69 (786)
T KOG0588|consen   12 GPWKLGKTLGKGSTGCVRLAKHAETGQLA----------------------AIKIIPKRSELSSSQPAGIEREIVIMKLI   69 (786)
T ss_pred             cceeccccccCCCCceehhhhccccccee----------------------EEEeeccccccccccccchhhhhHHHHHh
Confidence            35899999999999999999999998854                      44444332   233456788999999999


Q ss_pred             CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCe
Q 024842          103 SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPY  182 (262)
Q Consensus       103 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~i  182 (262)
                      .|||++++++.|          +....+|+++||+.+|.|++++-    ..+++++.++.++++||+.|+.|+|..+  |
T Consensus        70 ~HpnVl~LydVw----------e~~~~lylvlEyv~gGELFdylv----~kG~l~e~eaa~ff~QIi~gv~yCH~~~--i  133 (786)
T KOG0588|consen   70 EHPNVLRLYDVW----------ENKQHLYLVLEYVPGGELFDYLV----RKGPLPEREAAHFFRQILDGVSYCHAFN--I  133 (786)
T ss_pred             cCCCeeeeeeee----------ccCceEEEEEEecCCchhHHHHH----hhCCCCCHHHHHHHHHHHHHHHHHhhhc--c
Confidence            999999999998          66888999999999999999987    6778999999999999999999999988  9


Q ss_pred             eecCCCCCcEEEecCCCCCCceEEeeccceeeccccC----ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheec
Q 024842          183 AHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMREL  258 (262)
Q Consensus       183 vH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l  258 (262)
                      +|||+||+|+|++..+    .+||+|||.|....+..    ..|.++|++||-+.+..+--.    ..||||.|+++|.|
T Consensus       134 cHRDLKpENlLLd~~~----nIKIADFGMAsLe~~gklLeTSCGSPHYA~PEIV~G~pYdG~----~sDVWSCGVILfAL  205 (786)
T KOG0588|consen  134 CHRDLKPENLLLDVKN----NIKIADFGMASLEVPGKLLETSCGSPHYAAPEIVSGRPYDGR----PSDVWSCGVILFAL  205 (786)
T ss_pred             eeccCCchhhhhhccc----CEeeeccceeecccCCccccccCCCcccCCchhhcCCCCCCC----ccccchhHHHHHHH
Confidence            9999999999998776    59999999999766543    369999999998866654322    37999999999999


Q ss_pred             ccCC
Q 024842          259 MFGR  262 (262)
Q Consensus       259 ~~G~  262 (262)
                      ++|+
T Consensus       206 LtG~  209 (786)
T KOG0588|consen  206 LTGK  209 (786)
T ss_pred             HhCC
Confidence            9996

>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=6.5e-34  Score=233.35  Aligned_cols=190  Identities=26%  Similarity=0.316  Sum_probs=153.1

Q ss_pred             CceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc---chHHHHHHHHHHHHhhhC
Q 024842           26 NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ---NNEQLEMVREEIRVSSLF  102 (262)
Q Consensus        26 ~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~---~~~~~~~~~~E~~~l~~l  102 (262)
                      ++|++.+.||+|+||.||+|.+..+++                      .+|+|.+...   .....+.+.+|+.+++.+
T Consensus         1 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~----------------------~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l   58 (291)
T cd05612           1 DDLERIKTVGTGTFGRVHLVRDRISEH----------------------YYALKVMAIPEVIRLKQEQHVHNEKRVLKEV   58 (291)
T ss_pred             CCceeeeeeecCCCeEEEEEEEcCCCC----------------------EEEEEEEEHHHHhhhHHHHHHHHHHHHHHhC
Confidence            479999999999999999999887655                      5777766433   223456688899999999


Q ss_pred             CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCe
Q 024842          103 SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPY  182 (262)
Q Consensus       103 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~i  182 (262)
                      +||||+++++.+          ......+++|||+.+++|.+++.    ....+++..++.++.|++.||+|||+++  +
T Consensus        59 ~hp~iv~~~~~~----------~~~~~~~lv~e~~~~~~L~~~~~----~~~~~~~~~~~~~~~qi~~~l~~lH~~~--i  122 (291)
T cd05612          59 SHPFIIRLFWTE----------HDQRFLYMLMEYVPGGELFSYLR----NSGRFSNSTGLFYASEIVCALEYLHSKE--I  122 (291)
T ss_pred             CCCcHhhhHhhh----------ccCCeEEEEEeCCCCCCHHHHHH----HcCCCCHHHHHHHHHHHHHHHHHHHHCC--e
Confidence            999999999877          33567999999999999999886    4456899999999999999999999999  9


Q ss_pred             eecCCCCCcEEEecCCCCCCceEEeeccceeeccccC--ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheeccc
Q 024842          183 AHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF--ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMF  260 (262)
Q Consensus       183 vH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~--~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~  260 (262)
                      +||||||+||+++.++    .+||+|||++.......  ..+++.|.+||.+...+.     ....|+||+|+++|+|++
T Consensus       123 ~H~dlkp~NIli~~~~----~~kl~Dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-----~~~~DiwSlG~il~~l~~  193 (291)
T cd05612         123 VYRDLKPENILLDKEG----HIKLTDFGFAKKLRDRTWTLCGTPEYLAPEVIQSKGH-----NKAVDWWALGILIYEMLV  193 (291)
T ss_pred             eecCCCHHHeEECCCC----CEEEEecCcchhccCCcccccCChhhcCHHHHcCCCC-----CchhhHHHHHHHHHHHHh
Confidence            9999999999998766    69999999998664432  246677888875533221     234688888888888887


Q ss_pred             CC
Q 024842          261 GR  262 (262)
Q Consensus       261 G~  262 (262)
                      |+
T Consensus       194 g~  195 (291)
T cd05612         194 GY  195 (291)
T ss_pred             CC
Confidence            74

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt

>KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=6.8e-34  Score=231.30  Aligned_cols=201  Identities=23%  Similarity=0.353  Sum_probs=166.8

Q ss_pred             CCceeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccch-HHHHHHHHHH
Q 024842           18 GGDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNN-EQLEMVREEI   96 (262)
Q Consensus        18 ~~~~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~-~~~~~~~~E~   96 (262)
                      .....++.++|++...||.|..+.||+|+...+++                      .||||++..... ...+.+.+|+
T Consensus        18 ~~~~p~n~~~YeL~e~IG~G~sa~V~~A~c~p~~e----------------------~VAIK~inLEkc~~~ld~l~kE~   75 (516)
T KOG0582|consen   18 EKEFPLNAKDYELQEVIGVGASAVVYLARCIPTNE----------------------VVAIKIINLEKCNNDLDALRKEV   75 (516)
T ss_pred             cccCCCCccceeEEEEEeccceeEeeeeeecccCC----------------------EEEEEEeehhhhhhhHHHHHHHH
Confidence            33445678899999999999999999999987765                      688888876643 3368899999


Q ss_pred             HHhhhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHH
Q 024842           97 RVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMH  176 (262)
Q Consensus        97 ~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH  176 (262)
                      ..++.++||||++.+..|+.          ...+|+||+++.+|++.++++.....+  ++|..+..++++++.||.|||
T Consensus        76 ~~msl~~HPNIv~~~~sFvv----------~~~LWvVmpfMa~GS~ldIik~~~~~G--l~E~~Ia~iLre~LkaL~YLH  143 (516)
T KOG0582|consen   76 QTMSLIDHPNIVTYHCSFVV----------DSELWVVMPFMAGGSLLDIIKTYYPDG--LEEASIATILREVLKALDYLH  143 (516)
T ss_pred             HHhhhcCCCCcceEEEEEEe----------cceeEEeehhhcCCcHHHHHHHHcccc--ccHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999853          678999999999999999998765444  999999999999999999999


Q ss_pred             cCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccc---------cCccCcccCCcccch-hhhhhhhhhhhhcC
Q 024842          177 SLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQS---------KFALGQRRYSCRNGL-LSIVLHLSELLSCG  246 (262)
Q Consensus       177 ~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~---------~~~~~~~~~~~~~d~-~s~g~~~~e~~~~~  246 (262)
                      ++|  .||||||+.||||+.+|    .+||+|||.+..+..         ....+++.|++||.. -.+    .-+-.+.
T Consensus       144 ~~G--~IHRdvKAgnILi~~dG----~VkLadFgvsa~l~~~G~R~~~rf~tfvgtp~wmAPEvl~q~~----~GYdfKa  213 (516)
T KOG0582|consen  144 QNG--HIHRDVKAGNILIDSDG----TVKLADFGVSASLFDSGDRQVTRFNTFVGTPCWMAPEVLMQQL----HGYDFKA  213 (516)
T ss_pred             hcC--ceecccccccEEEcCCC----cEEEcCceeeeeecccCceeeEeeccccCcccccChHHhhhcc----cCccchh
Confidence            999  99999999999999998    699999998775432         223577788888873 222    1122457


Q ss_pred             cccchheeheecccCC
Q 024842          247 TVRVIQILMRELMFGR  262 (262)
Q Consensus       247 ~v~~~g~~~~~l~~G~  262 (262)
                      ||||+|++..||.+|+
T Consensus       214 DIwSfGITA~ELA~G~  229 (516)
T KOG0582|consen  214 DIWSFGITACELAHGH  229 (516)
T ss_pred             hhhhhhHHHHHHhcCC
Confidence            9999999999999885

>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2.3e-34  Score=240.26  Aligned_cols=188  Identities=22%  Similarity=0.355  Sum_probs=161.1

Q ss_pred             CceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCCCC
Q 024842           26 NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSHR  105 (262)
Q Consensus        26 ~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~h~  105 (262)
                      ..|...++||+|..|.||.|+...+++                      .||+|++........+-+.+|+.+++..+|+
T Consensus       273 ~~y~~~~kigqgaSG~vy~A~~~~~~~----------------------~VaiK~m~l~~Q~~keLilnEi~Vm~~~~H~  330 (550)
T KOG0578|consen  273 SKYTDFKKIGQGATGGVYVARKISTKQ----------------------EVAIKRMDLRKQPKKELLLNEILVMRDLHHP  330 (550)
T ss_pred             hhhcchhhhccccccceeeeeeccCCc----------------------eEEEEEEEeccCCchhhhHHHHHHHHhccch
Confidence            578899999999999999999887755                      6888888877777677889999999999999


Q ss_pred             CccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeeec
Q 024842          106 NLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHN  185 (262)
Q Consensus       106 ~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~  185 (262)
                      ||+.+++.|+.          .+.+|++|||+.+|+|.+.+.     ...++|.++..++++++.||+|||.++  |+||
T Consensus       331 NiVnfl~Sylv----------~deLWVVMEym~ggsLTDvVt-----~~~~~E~qIA~Icre~l~aL~fLH~~g--IiHr  393 (550)
T KOG0578|consen  331 NIVNFLDSYLV----------GDELWVVMEYMEGGSLTDVVT-----KTRMTEGQIAAICREILQGLKFLHARG--IIHR  393 (550)
T ss_pred             HHHHHHHHhcc----------cceeEEEEeecCCCchhhhhh-----cccccHHHHHHHHHHHHHHHHHHHhcc--eeee
Confidence            99999999963          478999999999999999885     445999999999999999999999999  9999


Q ss_pred             CCCCCcEEEecCCCCCCceEEeeccceeeccccC-----ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheeccc
Q 024842          186 DVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMF  260 (262)
Q Consensus       186 dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~  260 (262)
                      |||.+|||++.++    .+||+|||+|..+....     ..|++-|++||-+-.-     .+-...||||+|++++||+.
T Consensus       394 DIKSDnILL~~~g----~vKltDFGFcaqi~~~~~KR~TmVGTPYWMAPEVvtrk-----~YG~KVDIWSLGIMaIEMve  464 (550)
T KOG0578|consen  394 DIKSDNILLTMDG----SVKLTDFGFCAQISEEQSKRSTMVGTPYWMAPEVVTRK-----PYGPKVDIWSLGIMAIEMVE  464 (550)
T ss_pred             ccccceeEeccCC----cEEEeeeeeeeccccccCccccccCCCCccchhhhhhc-----ccCccccchhhhhHHHHHhc
Confidence            9999999999888    69999999999887654     3688888888866322     22234678888888888877


Q ss_pred             C
Q 024842          261 G  261 (262)
Q Consensus       261 G  261 (262)
                      |
T Consensus       465 G  465 (550)
T KOG0578|consen  465 G  465 (550)
T ss_pred             C
Confidence            6

>PTZ00263 protein kinase A catalytic subunit; Provisional

Probab=100.00  E-value=8.1e-34  Score=236.63  Aligned_cols=191  Identities=20%  Similarity=0.287  Sum_probs=155.6

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc---chHHHHHHHHHHHHhhh
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ---NNEQLEMVREEIRVSSL  101 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~---~~~~~~~~~~E~~~l~~  101 (262)
                      .++|++.+.||+|+||.||+|++..+++                      .+|+|.+...   .....+.+.+|+.+++.
T Consensus        17 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~----------------------~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~   74 (329)
T PTZ00263         17 LSDFEMGETLGTGSFGRVRIAKHKGTGE----------------------YYAIKCLKKREILKMKQVQHVAQEKSILME   74 (329)
T ss_pred             chheEEEEEEEecCCeEEEEEEECCCCC----------------------EEEEEEEEHHHHhhhhhHHHHHHHHHHHHh
Confidence            4789999999999999999999887655                      5677765432   22334678899999999


Q ss_pred             CCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCC
Q 024842          102 FSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPP  181 (262)
Q Consensus       102 l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~  181 (262)
                      ++||||+++++.+          ...+..+++|||+.+++|.+++.    ....+++..++.++.|++.||.|||+++  
T Consensus        75 l~hp~iv~~~~~~----------~~~~~~~lv~e~~~~~~L~~~l~----~~~~~~~~~~~~~~~qi~~aL~~LH~~~--  138 (329)
T PTZ00263         75 LSHPFIVNMMCSF----------QDENRVYFLLEFVVGGELFTHLR----KAGRFPNDVAKFYHAELVLAFEYLHSKD--  138 (329)
T ss_pred             CCCCCCCcEEEEE----------EcCCEEEEEEcCCCCChHHHHHH----HcCCCCHHHHHHHHHHHHHHHHHHHHCC--
Confidence            9999999999887          34678999999999999998886    4456899999999999999999999999  


Q ss_pred             eeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC--ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecc
Q 024842          182 YAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF--ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELM  259 (262)
Q Consensus       182 ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~--~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~  259 (262)
                      |+||||||+|||++.++    .+||+|||++.......  ..+++.|.+||.+-.-+.     ....|+|++|+++|+|+
T Consensus       139 ivH~dlkp~NIll~~~~----~~kl~Dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-----~~~~DiwslG~il~ell  209 (329)
T PTZ00263        139 IIYRDLKPENLLLDNKG----HVKVTDFGFAKKVPDRTFTLCGTPEYLAPEVIQSKGH-----GKAVDWWTMGVLLYEFI  209 (329)
T ss_pred             eeecCCCHHHEEECCCC----CEEEeeccCceEcCCCcceecCChhhcCHHHHcCCCC-----CCcceeechHHHHHHHH
Confidence            99999999999998776    69999999998765432  346677887776533321     23478888888888888


Q ss_pred             cCC
Q 024842          260 FGR  262 (262)
Q Consensus       260 ~G~  262 (262)
                      +|+
T Consensus       210 tg~  212 (329)
T PTZ00263        210 AGY  212 (329)
T ss_pred             cCC
Confidence            875

>KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=3.1e-34  Score=228.05  Aligned_cols=188  Identities=25%  Similarity=0.391  Sum_probs=152.6

Q ss_pred             ceeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhh--ccchHHHHHHHHHHH
Q 024842           20 DVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVL--IQNNEQLEMVREEIR   97 (262)
Q Consensus        20 ~~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~--~~~~~~~~~~~~E~~   97 (262)
                      ..+-....|...+.||+|+||.|..+.+..+++                      .||+|++.  ......+++..+|+.
T Consensus        16 ~~~~i~~~y~~~~~iG~GAyGvVcsA~~~~t~~----------------------~VAIKKi~~~F~~~~~akRtlRElk   73 (359)
T KOG0660|consen   16 ELFEIPRYYVLIEPIGRGAYGVVCSAKDKRTGE----------------------KVAIKKILNPFENQIDAKRTLRELK   73 (359)
T ss_pred             eEEeccceecccccccCcceeeEEEEEEcCCCC----------------------EeehhhhhhhhhchHHHHHHHHHHH
Confidence            555566788889999999999999999998765                      68999887  557777899999999


Q ss_pred             HhhhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHc
Q 024842           98 VSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHS  177 (262)
Q Consensus        98 ~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~  177 (262)
                      +++.++|+||+.+.+++.-     ...+.....|+++|++ +.+|.+.++    .+..++++.+..++.|++.||+|+|+
T Consensus        74 lLr~~~HeNIi~l~di~~p-----~~~~~f~DvYiV~elM-etDL~~iik----~~~~L~d~H~q~f~YQiLrgLKyiHS  143 (359)
T KOG0660|consen   74 LLRHLRHENIIGLLDIFRP-----PSRDKFNDVYLVFELM-ETDLHQIIK----SQQDLTDDHAQYFLYQILRGLKYIHS  143 (359)
T ss_pred             HHHHhcCCCcceEEeeccc-----ccccccceeEEehhHH-hhHHHHHHH----cCccccHHHHHHHHHHHHHhcchhhc
Confidence            9999999999999998742     1224456799999987 678888886    55569999999999999999999999


Q ss_pred             CCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccc----cC---ccCc------------ccCCcccchhhhhhh
Q 024842          178 LEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQS----KF---ALGQ------------RRYSCRNGLLSIVLH  238 (262)
Q Consensus       178 ~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~----~~---~~~~------------~~~~~~~d~~s~g~~  238 (262)
                      .+  |+||||||.|++++.+.    .+||+|||+|+...+    ..   ...|            ..|+...|+||.||+
T Consensus       144 An--ViHRDLKPsNll~n~~c----~lKI~DFGLAR~~~~~~~~~~mTeYVaTRWYRAPElll~~~~Yt~aiDiWSvGCI  217 (359)
T KOG0660|consen  144 AN--VIHRDLKPSNLLLNADC----DLKICDFGLARYLDKFFEDGFMTEYVATRWYRAPELLLNSSEYTKAIDIWSVGCI  217 (359)
T ss_pred             cc--ccccccchhheeeccCC----CEEeccccceeeccccCcccchhcceeeeeecCHHHHhccccccchhhhhhhhHH
Confidence            99  99999999999998777    699999999998853    11   1233            345555566666666


Q ss_pred             hhhhhhc
Q 024842          239 LSELLSC  245 (262)
Q Consensus       239 ~~e~~~~  245 (262)
                      +.|+++.
T Consensus       218 ~AEmL~g  224 (359)
T KOG0660|consen  218 LAEMLTG  224 (359)
T ss_pred             HHHHHcC
Confidence            6666654

>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.1e-33  Score=240.04  Aligned_cols=190  Identities=24%  Similarity=0.296  Sum_probs=151.4

Q ss_pred             CceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc---chHHHHHHHHHHHHhhhC
Q 024842           26 NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ---NNEQLEMVREEIRVSSLF  102 (262)
Q Consensus        26 ~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~---~~~~~~~~~~E~~~l~~l  102 (262)
                      ++|++.+.||+|+||.||++.+..+++                      .+|+|++...   .....+.+.+|+.+++.+
T Consensus         1 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~----------------------~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l   58 (377)
T cd05629           1 EDFHTVKVIGKGAFGEVRLVQKKDTGK----------------------IYAMKTLLKSEMFKKDQLAHVKAERDVLAES   58 (377)
T ss_pred             CCceEeEEEeecCCEEEEEEEECCCCC----------------------EEEEEEEEHHHHHHhHHHHHHHHHHHHHHhC
Confidence            479999999999999999999887655                      5677765432   233456788899999999


Q ss_pred             CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCe
Q 024842          103 SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPY  182 (262)
Q Consensus       103 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~i  182 (262)
                      +||||+++++.+          ......|++|||+.+++|.+++.    ....+++..++.++.|++.||+|||+.+  |
T Consensus        59 ~hp~iv~~~~~~----------~~~~~~~lv~E~~~gg~L~~~l~----~~~~~~~~~~~~~~~ql~~aL~~LH~~g--i  122 (377)
T cd05629          59 DSPWVVSLYYSF----------QDAQYLYLIMEFLPGGDLMTMLI----KYDTFSEDVTRFYMAECVLAIEAVHKLG--F  122 (377)
T ss_pred             CCCCcceEEEEE----------EcCCeeEEEEeCCCCCcHHHHHH----hcCCCCHHHHHHHHHHHHHHHHHHHhCC--e
Confidence            999999999887          34667999999999999999886    4456899999999999999999999999  9


Q ss_pred             eecCCCCCcEEEecCCCCCCceEEeeccceeecccc--------------------------------------------
Q 024842          183 AHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSK--------------------------------------------  218 (262)
Q Consensus       183 vH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~--------------------------------------------  218 (262)
                      +||||||+|||++.++    .++|+|||++..+...                                            
T Consensus       123 vHrDlkp~NIll~~~~----~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (377)
T cd05629         123 IHRDIKPDNILIDRGG----HIKLSDFGLSTGFHKQHDSAYYQKLLQGKSNKNRIDNRNSVAVDSINLTMSSKDQIATWK  198 (377)
T ss_pred             eccCCCHHHEEECCCC----CEEEeecccccccccccccccccccccccccccccccccccccccccccccchhhhhhhh
Confidence            9999999999998766    6999999998633210                                            


Q ss_pred             --------CccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecccCC
Q 024842          219 --------FALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMFGR  262 (262)
Q Consensus       219 --------~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~G~  262 (262)
                              ...++..|.+||.+..-.     .-...|+||+|+++|||++|+
T Consensus       199 ~~~~~~~~~~~gt~~y~aPE~~~~~~-----~~~~~DiwSlGvil~elltG~  245 (377)
T cd05629         199 KNRRLMAYSTVGTPDYIAPEIFLQQG-----YGQECDWWSLGAIMFECLIGW  245 (377)
T ss_pred             hcccccccccCCCccccCHHHHccCC-----CCCceeeEecchhhhhhhcCC
Confidence                    012455566666542221     123479999999999999985

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of

>KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=4.1e-34  Score=234.16  Aligned_cols=210  Identities=19%  Similarity=0.256  Sum_probs=158.0

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCCC
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSH  104 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~h  104 (262)
                      -++|++.+.||+|.||.|-+|++..+++.+|+|.....+...... . ....+.      .....+...+|+.+++++.|
T Consensus        96 lNqy~l~~eiG~G~yGkVkLar~~~~~~l~AiKil~K~~~~~~~~-~-~~~~a~------~~~~~ekv~~EIailKkl~H  167 (576)
T KOG0585|consen   96 LNQYELIKEIGSGQYGKVKLARDEVDGKLYAIKILPKKELRRQYG-F-PRQPAM------KLMPIEKVRREIAILKKLHH  167 (576)
T ss_pred             hhheehhhhhcCCccceEEEEeecCCCcEEEEEeechhhhhhhcc-c-cccccc------ccCcHHHHHHHHHHHHhcCC
Confidence            478999999999999999999999887765554222111110000 0 000011      11123678899999999999


Q ss_pred             CCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCC-CCHHHHHHHHHHHHHHHHHHHcCCCCee
Q 024842          105 RNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEF-FSTSDVLQIFYQICAGLKHMHSLEPPYA  183 (262)
Q Consensus       105 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~-~~~~~~~~i~~ql~~~l~~lH~~~~~iv  183 (262)
                      ||||+++++.        ++...+.+|+|+|||..|.+...=     ...+ +++.+++.++++++.||+|||.++  |+
T Consensus       168 ~nVV~LiEvL--------DDP~s~~~YlVley~s~G~v~w~p-----~d~~els~~~Ar~ylrDvv~GLEYLH~Qg--ii  232 (576)
T KOG0585|consen  168 PNVVKLIEVL--------DDPESDKLYLVLEYCSKGEVKWCP-----PDKPELSEQQARKYLRDVVLGLEYLHYQG--II  232 (576)
T ss_pred             cCeeEEEEee--------cCcccCceEEEEEeccCCccccCC-----CCcccccHHHHHHHHHHHHHHHHHHHhcC--ee
Confidence            9999999987        456678899999999988885421     3444 899999999999999999999999  99


Q ss_pred             ecCCCCCcEEEecCCCCCCceEEeeccceeecccc----------CccCcccCCcccchhhhhhhhhhhhhcCcccchhe
Q 024842          184 HNDVKPGNILITCRKGQPPLAILMDFGSARPAQSK----------FALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQI  253 (262)
Q Consensus       184 H~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~----------~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~  253 (262)
                      ||||||+|+|++.++    .+||+|||.+......          ...|++.|.+||-.+.-.- ....-..-|||++|+
T Consensus       233 HRDIKPsNLLl~~~g----~VKIsDFGVs~~~~~~~~~~~d~~L~~tvGTPAF~APE~c~~~~~-~~~~g~a~DiWalGV  307 (576)
T KOG0585|consen  233 HRDIKPSNLLLSSDG----TVKISDFGVSNEFPQGSDEGSDDQLSRTVGTPAFFAPELCSGGNS-FSYSGFALDIWALGV  307 (576)
T ss_pred             ccccchhheEEcCCC----cEEeeccceeeecccCCccccHHHHhhcCCCccccchHhhcCCCC-ccccchhhhhhhhhh
Confidence            999999999999887    7999999999876321          1468999999987765211 111222368999999


Q ss_pred             eheecccCC
Q 024842          254 LMRELMFGR  262 (262)
Q Consensus       254 ~~~~l~~G~  262 (262)
                      ++|-|++|+
T Consensus       308 TLYCllfG~  316 (576)
T KOG0585|consen  308 TLYCLLFGQ  316 (576)
T ss_pred             hHHHhhhcc
Confidence            999999885

>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

Probab=100.00  E-value=1.7e-33  Score=238.90  Aligned_cols=190  Identities=20%  Similarity=0.289  Sum_probs=151.7

Q ss_pred             CceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc---chHHHHHHHHHHHHhhhC
Q 024842           26 NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ---NNEQLEMVREEIRVSSLF  102 (262)
Q Consensus        26 ~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~---~~~~~~~~~~E~~~l~~l  102 (262)
                      ++|++.+.||+|+||.||+|++..+++                      .+|+|.+...   .....+.+.+|+.+++.+
T Consensus         1 ~~y~~~~~lG~G~~g~V~~a~~~~~~~----------------------~~avK~~~~~~~~~~~~~~~~~~E~~il~~l   58 (376)
T cd05598           1 SMFVKIKTIGIGAFGEVCLVRKVDTNA----------------------LYAMKTLRKADVLMRNQAAHVKAERDILAEA   58 (376)
T ss_pred             CCceEEEEEEeCCCeEEEEEEECCCCC----------------------EEEEEEEcHHHHHhhhhHHHHHHHHHHHHhC
Confidence            479999999999999999999887655                      5777765432   222345678899999999


Q ss_pred             CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCe
Q 024842          103 SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPY  182 (262)
Q Consensus       103 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~i  182 (262)
                      +|+||++++..+          ...+..+++|||+.+++|.+++.    ....+++..++.++.||+.||+|||+.+  |
T Consensus        59 ~h~~iv~~~~~~----------~~~~~~~lv~E~~~~g~L~~~i~----~~~~~~~~~~~~~~~qi~~al~~lH~~~--i  122 (376)
T cd05598          59 DNEWVVKLYYSF----------QDKDNLYFVMDYIPGGDMMSLLI----RLGIFEEDLARFYIAELTCAIESVHKMG--F  122 (376)
T ss_pred             CCCCcceEEEEE----------EcCCEEEEEEeCCCCCcHHHHHH----hcCCCCHHHHHHHHHHHHHHHHHHHHCC--e
Confidence            999999999887          34678999999999999999886    4456899999999999999999999998  9


Q ss_pred             eecCCCCCcEEEecCCCCCCceEEeeccceeeccc---------------------------------------------
Q 024842          183 AHNDVKPGNILITCRKGQPPLAILMDFGSARPAQS---------------------------------------------  217 (262)
Q Consensus       183 vH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~---------------------------------------------  217 (262)
                      +||||||+|||++.++    .++|+|||+|..+..                                             
T Consensus       123 vHrDlkp~Nill~~~~----~ikL~DFG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (376)
T cd05598         123 IHRDIKPDNILIDRDG----HIKLTDFGLCTGFRWTHDSKYYQKGDHHRQDSMEPSEEWSEIDRCRLKPLERRRKRQHQR  198 (376)
T ss_pred             EeCCCCHHHEEECCCC----CEEEEeCCCCccccccccccccccccccccccccccccccccccccccchhhhhhhhccc
Confidence            9999999999998776    699999999753210                                             


Q ss_pred             ---cCccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecccCC
Q 024842          218 ---KFALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMFGR  262 (262)
Q Consensus       218 ---~~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~G~  262 (262)
                         ....+++.|.+||.+...++     ....|+||+|+++|+|++|+
T Consensus       199 ~~~~~~~gt~~y~aPE~~~~~~~-----~~~~DiwSlGvilyell~G~  241 (376)
T cd05598         199 CLAHSLVGTPNYIAPEVLLRTGY-----TQLCDWWSVGVILYEMLVGQ  241 (376)
T ss_pred             ccccccCCCccccCHHHHcCCCC-----CcceeeeeccceeeehhhCC
Confidence               01135556666665533221     12479999999999999985

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.

>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.3e-33  Score=238.63  Aligned_cols=190  Identities=23%  Similarity=0.345  Sum_probs=152.7

Q ss_pred             CceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc---chHHHHHHHHHHHHhhhC
Q 024842           26 NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ---NNEQLEMVREEIRVSSLF  102 (262)
Q Consensus        26 ~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~---~~~~~~~~~~E~~~l~~l  102 (262)
                      ++|++.+.||+|+||.||+|++..+++                      .+|+|++...   .......+.+|+.+++.+
T Consensus         1 ~~y~~~~~lG~G~~g~V~~~~~~~~~~----------------------~vaiK~~~~~~~~~~~~~~~~~~E~~il~~l   58 (364)
T cd05599           1 DDFESIKVIGRGAFGEVRLVQKKDTGH----------------------IYAMKKLRKSEMLEKEQVAHVRAERDILAEA   58 (364)
T ss_pred             CCceEEEEEEecCCEEEEEEEECCCCC----------------------EEEEEEEEHHHhhhhhHHHHHHHHHHHHHhC
Confidence            479999999999999999999987655                      5777766533   233445678899999999


Q ss_pred             CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCe
Q 024842          103 SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPY  182 (262)
Q Consensus       103 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~i  182 (262)
                      +||||+++++.+          ......+++|||+.+++|.+++.    ....+++..++.++.|++.||+|||+.+  |
T Consensus        59 ~h~~iv~~~~~~----------~~~~~~~lv~E~~~~g~L~~~l~----~~~~l~~~~~~~~~~qi~~aL~~lH~~~--i  122 (364)
T cd05599          59 DNPWVVKLYYSF----------QDENYLYLIMEYLPGGDMMTLLM----KKDTFTEEETRFYIAETILAIDSIHKLG--Y  122 (364)
T ss_pred             CCCCCcceEEEE----------EcCCeEEEEECCCCCcHHHHHHH----HcCCCCHHHHHHHHHHHHHHHHHHHHCC--e
Confidence            999999999887          44678999999999999999886    4456999999999999999999999998  9


Q ss_pred             eecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-------------------------------------------
Q 024842          183 AHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-------------------------------------------  219 (262)
Q Consensus       183 vH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-------------------------------------------  219 (262)
                      +||||||+|||++.++    .++|+|||++.......                                           
T Consensus       123 vH~Dlkp~NIl~~~~~----~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (364)
T cd05599         123 IHRDIKPDNLLLDAKG----HIKLSDFGLCTGLKKSHRTEFYRILSHALPSNFLDFISKPMSSKRKAETWKRNRRALAYS  198 (364)
T ss_pred             EeccCCHHHeEECCCC----CEEEeecccceeccccccccccccccccccccccccccccccccccccchhhcccccccc
Confidence            9999999999998777    69999999987543211                                           


Q ss_pred             ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecccCC
Q 024842          220 ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMFGR  262 (262)
Q Consensus       220 ~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~G~  262 (262)
                      ..+++.|++||.+...+     .....|+||+|+++|+|++|+
T Consensus       199 ~~gt~~y~aPE~~~~~~-----~~~~~DiwSlG~il~el~~G~  236 (364)
T cd05599         199 TVGTPDYIAPEVFLQTG-----YNKECDWWSLGVIMYEMLVGY  236 (364)
T ss_pred             cccCccccCHHHHcCCC-----CCCeeeeecchhHHHHhhcCC
Confidence            12555666666442221     123478999999999998885

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica

>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=2e-33  Score=234.66  Aligned_cols=190  Identities=21%  Similarity=0.280  Sum_probs=156.4

Q ss_pred             CceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc---chHHHHHHHHHHHHhhhC
Q 024842           26 NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ---NNEQLEMVREEIRVSSLF  102 (262)
Q Consensus        26 ~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~---~~~~~~~~~~E~~~l~~l  102 (262)
                      ++|++.+.||+|+||.||+|++..+++                      .+|+|++...   .......+..|+.+++.+
T Consensus         1 ~~y~~~~~ig~G~~g~Vy~~~~~~~~~----------------------~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~   58 (333)
T cd05600           1 KDFQILTQVGQGGYGQVFLAKKKDTGE----------------------IVALKRMKKSLLFKLNEVRHVLTERDILTTT   58 (333)
T ss_pred             CCcEEEEEEeecCCeEEEEEEECCCCC----------------------EEEEEEEEHHHHhhhhHHHHHHHHHHHHHhC
Confidence            479999999999999999999887655                      5677765433   223346688899999999


Q ss_pred             CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCe
Q 024842          103 SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPY  182 (262)
Q Consensus       103 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~i  182 (262)
                      +||||+++++.+          ......|++|||+.+++|.+++.    ....+++..++.++.|++.||.|||+.+  +
T Consensus        59 ~h~~iv~~~~~~----------~~~~~~~lv~e~~~g~~L~~~l~----~~~~l~~~~~~~~~~qi~~~l~~lH~~~--i  122 (333)
T cd05600          59 KSEWLVKLLYAF----------QDDEYLYLAMEYVPGGDFRTLLN----NLGVLSEDHARFYMAEMFEAVDALHELG--Y  122 (333)
T ss_pred             CCCCCccEEEEE----------EcCCEEEEEEeCCCCCCHHHHHH----HcCCCCHHHHHHHHHHHHHHHHHHHHCC--c
Confidence            999999999887          34667999999999999999886    4456899999999999999999999999  9


Q ss_pred             eecCCCCCcEEEecCCCCCCceEEeeccceeeccc--cCccCcccCCcccchhhhhhhhhhhhhcCcccchheeheeccc
Q 024842          183 AHNDVKPGNILITCRKGQPPLAILMDFGSARPAQS--KFALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMF  260 (262)
Q Consensus       183 vH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~--~~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~  260 (262)
                      +||||||+||+++.++    .+||+|||++.....  ....++..|.+||.+..-.     .....|+|++|+++|+|++
T Consensus       123 vH~dlkp~Nil~~~~~----~~kL~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~~~-----~~~~~DvwslG~il~ell~  193 (333)
T cd05600         123 IHRDLKPENFLIDASG----HIKLTDFGLSKGIVTYANSVVGSPDYMAPEVLRGKG-----YDFTVDYWSLGCMLYEFLC  193 (333)
T ss_pred             cccCCCHHHEEECCCC----CEEEEeCcCCcccccccCCcccCccccChhHhcCCC-----CCCccceecchHHHhhhhh
Confidence            9999999999998776    699999999986543  2345778888888764332     2234799999999999998


Q ss_pred             CC
Q 024842          261 GR  262 (262)
Q Consensus       261 G~  262 (262)
                      |+
T Consensus       194 g~  195 (333)
T cd05600         194 GF  195 (333)
T ss_pred             CC
Confidence            85

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.

>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=8.5e-34  Score=241.54  Aligned_cols=195  Identities=21%  Similarity=0.288  Sum_probs=158.6

Q ss_pred             eecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhh
Q 024842           22 WINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSL  101 (262)
Q Consensus        22 ~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~  101 (262)
                      .+..++|.+.++||+|+||.|+++....+++..|+|                   ++|+-..-...+.+....|.+++..
T Consensus       364 ~~~l~~F~~l~vLGkGsFGkV~lae~k~~~e~yAIK-------------------~LKK~~Il~~d~Ve~~~~EkrI~~l  424 (694)
T KOG0694|consen  364 PLTLDDFRLLAVLGRGSFGKVLLAELKGTNEYYAIK-------------------VLKKGDILQRDEVESLMCEKRIFEL  424 (694)
T ss_pred             cccccceEEEEEeccCcCceEEEEEEcCCCcEEEEE-------------------EeeccceeccccHHHHHHHHHHHHH
Confidence            455689999999999999999999999887754433                   3333333345566778889888887


Q ss_pred             CC-CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCC
Q 024842          102 FS-HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEP  180 (262)
Q Consensus       102 l~-h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~  180 (262)
                      .. ||.++.++.+|          ++..++|++|||..||++..++     ....+++..+..++..++.||+|||+++ 
T Consensus       425 a~~HPFL~~L~~~f----------QT~~~l~fvmey~~Ggdm~~~~-----~~~~F~e~rarfyaAev~l~L~fLH~~~-  488 (694)
T KOG0694|consen  425 ANRHPFLVNLFSCF----------QTKEHLFFVMEYVAGGDLMHHI-----HTDVFSEPRARFYAAEVVLGLQFLHENG-  488 (694)
T ss_pred             hccCCeEeeccccc----------ccCCeEEEEEEecCCCcEEEEE-----ecccccHHHHHHHHHHHHHHHHHHHhcC-
Confidence            75 99999999999          6689999999999999966554     4456999999999999999999999999 


Q ss_pred             CeeecCCCCCcEEEecCCCCCCceEEeeccceeecc-----ccCccCcccCCcccchhhhhhhhhhhhhcCcccchheeh
Q 024842          181 PYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQ-----SKFALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILM  255 (262)
Q Consensus       181 ~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~-----~~~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~  255 (262)
                       ||+||||.+|||++.+|    .+||+|||+|+.-.     .....||+.|.+||-+-...+..+     =|.|++|++|
T Consensus       489 -IIYRDlKLdNiLLD~eG----h~kiADFGlcKe~m~~g~~TsTfCGTpey~aPEil~e~~Yt~a-----VDWW~lGVLl  558 (694)
T KOG0694|consen  489 -IIYRDLKLDNLLLDTEG----HVKIADFGLCKEGMGQGDRTSTFCGTPEFLAPEVLTEQSYTRA-----VDWWGLGVLL  558 (694)
T ss_pred             -ceeeecchhheEEcccC----cEEecccccccccCCCCCccccccCChhhcChhhhccCcccch-----hhHHHHHHHH
Confidence             99999999999999988    79999999999743     222368888888876655444433     3788888889


Q ss_pred             eecccC
Q 024842          256 RELMFG  261 (262)
Q Consensus       256 ~~l~~G  261 (262)
                      |||+.|
T Consensus       559 yeML~G  564 (694)
T KOG0694|consen  559 YEMLVG  564 (694)
T ss_pred             HHHHcC
Confidence            988887

>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional

Probab=100.00  E-value=2e-33  Score=235.00  Aligned_cols=195  Identities=19%  Similarity=0.269  Sum_probs=157.6

Q ss_pred             eecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc---chHHHHHHHHHHHH
Q 024842           22 WINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ---NNEQLEMVREEIRV   98 (262)
Q Consensus        22 ~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~---~~~~~~~~~~E~~~   98 (262)
                      .+..++|++.+.||+|+||.||+|.+..++                     ...+++|.+...   .....+.+.+|+.+
T Consensus        26 ~~~~~~y~~~~~ig~G~~g~Vy~a~~~~~~---------------------~~~vavK~~~~~~~~~~~~~~~~~~E~~~   84 (340)
T PTZ00426         26 KMKYEDFNFIRTLGTGSFGRVILATYKNED---------------------FPPVAIKRFEKSKIIKQKQVDHVFSERKI   84 (340)
T ss_pred             CCChhhcEEEEEEeecCCeEEEEEEEECCC---------------------CeEEEEEEEEHHHhhhhhhHHHHHHHHHH
Confidence            345678999999999999999999876542                     125777766432   23345677889999


Q ss_pred             hhhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcC
Q 024842           99 SSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSL  178 (262)
Q Consensus        99 l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~  178 (262)
                      ++.++||||+++++++          ......+++|||+.+++|.+++.    ....+++..++.++.|++.||.|||+.
T Consensus        85 l~~l~hp~Iv~~~~~~----------~~~~~~~lv~Ey~~~g~L~~~i~----~~~~~~~~~~~~~~~qi~~aL~~LH~~  150 (340)
T PTZ00426         85 LNYINHPFCVNLYGSF----------KDESYLYLVLEFVIGGEFFTFLR----RNKRFPNDVGCFYAAQIVLIFEYLQSL  150 (340)
T ss_pred             HHhCCCCCCcceEEEE----------EeCCEEEEEEeCCCCCcHHHHHH----HcCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            9999999999999987          34667999999999999999886    445699999999999999999999999


Q ss_pred             CCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC--ccCcccCCcccchhhhhhhhhhhhhcCcccchheehe
Q 024842          179 EPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF--ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMR  256 (262)
Q Consensus       179 ~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~--~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~  256 (262)
                      +  |+||||||+|||++.++    .++|+|||++.......  ..+++.|++||.+...++     ....|+||+|+++|
T Consensus       151 ~--ivHrDLkp~NILl~~~~----~ikL~DFG~a~~~~~~~~~~~gt~~y~aPE~~~~~~~-----~~~~DiwSlGvil~  219 (340)
T PTZ00426        151 N--IVYRDLKPENLLLDKDG----FIKMTDFGFAKVVDTRTYTLCGTPEYIAPEILLNVGH-----GKAADWWTLGIFIY  219 (340)
T ss_pred             C--eEccCCCHHHEEECCCC----CEEEecCCCCeecCCCcceecCChhhcCHHHHhCCCC-----CccccccchhhHHH
Confidence            8  99999999999998766    69999999998765432  356777888886643221     23478999999999


Q ss_pred             ecccCC
Q 024842          257 ELMFGR  262 (262)
Q Consensus       257 ~l~~G~  262 (262)
                      +|++|+
T Consensus       220 ell~G~  225 (340)
T PTZ00426        220 EILVGC  225 (340)
T ss_pred             HHhcCC
Confidence            999885

>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

Probab=100.00  E-value=2.3e-33  Score=238.39  Aligned_cols=189  Identities=21%  Similarity=0.291  Sum_probs=151.7

Q ss_pred             ceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc---chHHHHHHHHHHHHhhhCC
Q 024842           27 RYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ---NNEQLEMVREEIRVSSLFS  103 (262)
Q Consensus        27 ~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~---~~~~~~~~~~E~~~l~~l~  103 (262)
                      .|++++.||+|+||.||+|++..+++                      .+|+|++...   .....+.+..|+.+++.++
T Consensus         2 ~f~~~~~LG~G~~g~Vy~~~~~~~~~----------------------~~aiK~i~~~~~~~~~~~~~~~~E~~il~~l~   59 (381)
T cd05626           2 MFVKIKTLGIGAFGEVCLACKVDTHA----------------------LYAMKTLRKKDVLNRNQVAHVKAERDILAEAD   59 (381)
T ss_pred             CceEEEEEeecCCEEEEEEEECCCCC----------------------EEEEEEEEHHHhhhhHHHHHHHHHHHHHHhcC
Confidence            68999999999999999999877655                      6777776543   2344567889999999999


Q ss_pred             CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCee
Q 024842          104 HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYA  183 (262)
Q Consensus       104 h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~iv  183 (262)
                      ||||+++++.+          ......+++|||+.+++|.+++.    ....+++..++.++.|++.||.|||+.+  |+
T Consensus        60 h~~iv~l~~~~----------~~~~~~~lv~E~~~gg~L~~~l~----~~~~~~e~~~~~~~~qi~~aL~~LH~~g--iv  123 (381)
T cd05626          60 NEWVVKLYYSF----------QDKDNLYFVMDYIPGGDMMSLLI----RMEVFPEVLARFYIAELTLAIESVHKMG--FI  123 (381)
T ss_pred             CCCeeeeEEEE----------ecCCEEEEEEecCCCCcHHHHHH----hcCCCCHHHHHHHHHHHHHHHHHHHhCC--ee
Confidence            99999999887          34677999999999999999886    4456899999999999999999999988  99


Q ss_pred             ecCCCCCcEEEecCCCCCCceEEeeccceeeccc----------------------------------------------
Q 024842          184 HNDVKPGNILITCRKGQPPLAILMDFGSARPAQS----------------------------------------------  217 (262)
Q Consensus       184 H~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~----------------------------------------------  217 (262)
                      ||||||+|||++.++    .++|+|||++.....                                              
T Consensus       124 HrDlKp~Nili~~~~----~~kL~DFGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (381)
T cd05626         124 HRDIKPDNILIDLDG----HIKLTDFGLCTGFRWTHNSKYYQKGSHIRQDSMEPSDLWDDVSNCRCGDRLKTLEQRATKQ  199 (381)
T ss_pred             ecCCcHHHEEECCCC----CEEEeeCcCCcccccccccccccccccccccccCcccccccccccccccccchhhcccccc
Confidence            999999999998766    699999998753210                                              


Q ss_pred             ------cCccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecccCC
Q 024842          218 ------KFALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMFGR  262 (262)
Q Consensus       218 ------~~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~G~  262 (262)
                            ....++..|.+||.+..-++     ....|+||+|+++|||++|+
T Consensus       200 ~~~~~~~~~~gt~~Y~aPE~~~~~~~-----~~~~DiwSlG~il~elltG~  245 (381)
T cd05626         200 HQRCLAHSLVGTPNYIAPEVLLRKGY-----TQLCDWWSVGVILFEMLVGQ  245 (381)
T ss_pred             ccccccccccCCccccCHHHHcCCCC-----CCccceeehhhHHHHHHhCC
Confidence                  01135566677665533221     22479999999999999985

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po

>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

Probab=100.00  E-value=2.2e-33  Score=238.60  Aligned_cols=189  Identities=20%  Similarity=0.290  Sum_probs=151.1

Q ss_pred             ceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc---chHHHHHHHHHHHHhhhCC
Q 024842           27 RYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ---NNEQLEMVREEIRVSSLFS  103 (262)
Q Consensus        27 ~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~---~~~~~~~~~~E~~~l~~l~  103 (262)
                      +|++++.||+|+||.||+|++..+++                      .+|+|++...   .....+.+.+|+.+++.++
T Consensus         2 ~f~~~~~LG~G~~g~Vy~a~~~~~~~----------------------~~aiK~i~~~~~~~~~~~~~~~~E~~il~~~~   59 (382)
T cd05625           2 MFVKIKTLGIGAFGEVCLARKVDTKA----------------------LYAMKTLRKKDVLLRNQVAHVKAERDILAEAD   59 (382)
T ss_pred             CcEEEEEEEeCCCEEEEEEEECCCCC----------------------EEEEEEEeHHHhhhHHHHHHHHHHHHHHHhCC
Confidence            68999999999999999999887655                      5677766433   2334567888999999999


Q ss_pred             CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCee
Q 024842          104 HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYA  183 (262)
Q Consensus       104 h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~iv  183 (262)
                      ||||++++..+          ......|++|||+.+++|.+++.    ....+++..+..++.|++.||+|||+++  |+
T Consensus        60 h~~iv~~~~~~----------~~~~~~~lv~E~~~gg~L~~~l~----~~~~~~e~~~~~~~~qi~~al~~lH~~~--iv  123 (382)
T cd05625          60 NEWVVRLYYSF----------QDKDNLYFVMDYIPGGDMMSLLI----RMGIFPEDLARFYIAELTCAVESVHKMG--FI  123 (382)
T ss_pred             CCcCCeEEEEE----------EeCCEEEEEEeCCCCCcHHHHHH----hcCCCCHHHHHHHHHHHHHHHHHHHhCC--ee
Confidence            99999999887          34667999999999999998876    3456899999999999999999999998  99


Q ss_pred             ecCCCCCcEEEecCCCCCCceEEeeccceeeccc----------------------------------------------
Q 024842          184 HNDVKPGNILITCRKGQPPLAILMDFGSARPAQS----------------------------------------------  217 (262)
Q Consensus       184 H~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~----------------------------------------------  217 (262)
                      ||||||+|||++.++    .+||+|||+|.....                                              
T Consensus       124 HrDlKp~NILl~~~g----~~kL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (382)
T cd05625         124 HRDIKPDNILIDRDG----HIKLTDFGLCTGFRWTHDSKYYQSGDHVRQDSMDFSNEWGDPANCRCGDRLKPLERRAARQ  199 (382)
T ss_pred             cCCCCHHHEEECCCC----CEEEeECCCCccccccccccccccccccccccccccccccccccccccccccchhhhhccc
Confidence            999999999998776    699999999753210                                              


Q ss_pred             ------cCccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecccCC
Q 024842          218 ------KFALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMFGR  262 (262)
Q Consensus       218 ------~~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~G~  262 (262)
                            ....++..|.+||.+..-++     ....|+||+|+++|||++|+
T Consensus       200 ~~~~~~~~~~gt~~Y~aPE~~~~~~~-----~~~~DiwSlGvil~elltG~  245 (382)
T cd05625         200 HQRCLAHSLVGTPNYIAPEVLLRTGY-----TQLCDWWSVGVILYEMLVGQ  245 (382)
T ss_pred             cccccccccccCcccCCHHHhcCCCC-----CCeeeEEechHHHHHHHhCC
Confidence                  01135566777775543322     22479999999999999985

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an

>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=3.9e-33  Score=234.47  Aligned_cols=190  Identities=22%  Similarity=0.359  Sum_probs=155.1

Q ss_pred             CceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc---chHHHHHHHHHHHHhhhC
Q 024842           26 NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ---NNEQLEMVREEIRVSSLF  102 (262)
Q Consensus        26 ~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~---~~~~~~~~~~E~~~l~~l  102 (262)
                      ++|++.+.||+|+||.||+|++..+++                      .||+|++...   .......+..|+.+++.+
T Consensus         1 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~----------------------~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~   58 (350)
T cd05573           1 DDFEVIKVIGRGAFGEVWLVRDKDTGQ----------------------VYAMKVLRKSDMIKRNQIAHVRAERDILADA   58 (350)
T ss_pred             CCceEEEEEEeCCcEEEEEEEECCCCC----------------------EEEEEEEEHHHHhhccHHHHHHHHHHHHHhc
Confidence            479999999999999999999887655                      5677766433   223446788899999999


Q ss_pred             CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCe
Q 024842          103 SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPY  182 (262)
Q Consensus       103 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~i  182 (262)
                      +||||++++..+          ......+++|||+.+++|.+++.    ....+++..++.++.|++.||.|||+.+  +
T Consensus        59 ~~~~i~~~~~~~----------~~~~~~~lv~e~~~~~~L~~~l~----~~~~l~~~~~~~i~~qi~~aL~~LH~~g--i  122 (350)
T cd05573          59 DSPWIVKLYYSF----------QDEEHLYLVMEYMPGGDLMNLLI----RKDVFPEETARFYIAELVLALDSVHKLG--F  122 (350)
T ss_pred             CCCCccchhhhe----------ecCCeEEEEEcCCCCCCHHHHHH----HcCCCCHHHHHHHHHHHHHHHHHHHHCC--e
Confidence            999999999887          34667999999999999999886    3356999999999999999999999988  9


Q ss_pred             eecCCCCCcEEEecCCCCCCceEEeeccceeeccccC----------------------------------ccCcccCCc
Q 024842          183 AHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF----------------------------------ALGQRRYSC  228 (262)
Q Consensus       183 vH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~----------------------------------~~~~~~~~~  228 (262)
                      +||||||+||+++.++    .++|+|||++.......                                  ..++..|.+
T Consensus       123 iH~Dlkp~NIll~~~~----~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~a  198 (350)
T cd05573         123 IHRDIKPDNILIDADG----HIKLADFGLCKKMNKAKDREYYLNDSHNLLFRDNVLVRRRDHKQRRVRANSTVGTPDYIA  198 (350)
T ss_pred             eccCCCHHHeEECCCC----CEEeecCCCCccCcccCcccccccccccccccccccccccccccccccccccccCccccC
Confidence            9999999999998776    69999999998654332                                  245667777


Q ss_pred             ccchhhhhhhhhhhhhcCcccchheeheecccCC
Q 024842          229 RNGLLSIVLHLSELLSCGTVRVIQILMRELMFGR  262 (262)
Q Consensus       229 ~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~G~  262 (262)
                      ||.+..-     ......|+||+|+++|+|++|+
T Consensus       199 PE~~~~~-----~~~~~~DiwSlG~il~ell~g~  227 (350)
T cd05573         199 PEVLRGT-----PYGLECDWWSLGVILYEMLYGF  227 (350)
T ss_pred             HHHHcCC-----CCCCceeeEecchhhhhhccCC
Confidence            7755333     2223579999999999999985

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the

>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

Probab=100.00  E-value=2.3e-33  Score=237.21  Aligned_cols=198  Identities=19%  Similarity=0.235  Sum_probs=157.7

Q ss_pred             eeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhc---cchHHHHHHHHHHH
Q 024842           21 VWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLI---QNNEQLEMVREEIR   97 (262)
Q Consensus        21 ~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~---~~~~~~~~~~~E~~   97 (262)
                      ..+..++|++.+.||+|+||.||++++..+++                      .+|+|.+..   ......+.+.+|+.
T Consensus        38 ~~~~~~~y~~~~~lG~G~fg~Vy~~~~~~~~~----------------------~~aiK~~~~~~~~~~~~~~~~~~e~~   95 (370)
T cd05621          38 LQMKAEDYDVVKVIGRGAFGEVQLVRHKSSQK----------------------VYAMKLLSKFEMIKRSDSAFFWEERD   95 (370)
T ss_pred             cCCCHHHCeEEEEEEecCCeEEEEEEECCCCC----------------------EEEEEEEEHHHhhhhhhHHHHHHHHH
Confidence            34456899999999999999999999987655                      566665532   12233456778999


Q ss_pred             HhhhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHc
Q 024842           98 VSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHS  177 (262)
Q Consensus        98 ~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~  177 (262)
                      +++.++||||+++++.+          ......|++|||+.+++|.+++.     ...+++..+..++.|++.||+|||+
T Consensus        96 i~~~~~hp~iv~~~~~~----------~~~~~~~lv~Ey~~gg~L~~~l~-----~~~~~~~~~~~~~~qil~aL~~LH~  160 (370)
T cd05621          96 IMAFANSPWVVQLFCAF----------QDDKYLYMVMEYMPGGDLVNLMS-----NYDVPEKWAKFYTAEVVLALDAIHS  160 (370)
T ss_pred             HHHhCCCCCEeeEEEEE----------EcCCEEEEEEcCCCCCcHHHHHH-----hcCCCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999887          34677999999999999999875     2348999999999999999999999


Q ss_pred             CCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeecccc------CccCcccCCcccchhhhhhhhhhhhhcCcccch
Q 024842          178 LEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSK------FALGQRRYSCRNGLLSIVLHLSELLSCGTVRVI  251 (262)
Q Consensus       178 ~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~------~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~  251 (262)
                      .+  |+||||||+|||++.++    .+||+|||+|......      ...++..|.+||.+...+... ......|+||+
T Consensus       161 ~~--IvHrDLKp~NILl~~~~----~~kL~DFG~a~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~-~~~~~~DiwSl  233 (370)
T cd05621         161 MG--LIHRDVKPDNMLLDKHG----HLKLADFGTCMKMDETGMVRCDTAVGTPDYISPEVLKSQGGDG-YYGRECDWWSV  233 (370)
T ss_pred             CC--eEecCCCHHHEEECCCC----CEEEEecccceecccCCceecccCCCCcccCCHHHHhccCCCC-CCCcccCEEee
Confidence            98  99999999999998776    6999999999876432      234777888888764332110 01235799999


Q ss_pred             heeheecccCC
Q 024842          252 QILMRELMFGR  262 (262)
Q Consensus       252 g~~~~~l~~G~  262 (262)
                      |+++|+|++|+
T Consensus       234 G~ilyell~G~  244 (370)
T cd05621         234 GVFLFEMLVGD  244 (370)
T ss_pred             hHHHHHHHhCC
Confidence            99999999985

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found

>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

Probab=100.00  E-value=4.8e-33  Score=232.18  Aligned_cols=196  Identities=22%  Similarity=0.278  Sum_probs=155.2

Q ss_pred             CceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc---chHHHHHHHHHHHHhhhC
Q 024842           26 NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ---NNEQLEMVREEIRVSSLF  102 (262)
Q Consensus        26 ~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~---~~~~~~~~~~E~~~l~~l  102 (262)
                      ++|++.+.||+|+||.||++++..+++                      .+|+|.+...   .......+.+|..++..+
T Consensus         1 d~y~i~~~lG~G~fg~V~~~~~~~~~~----------------------~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~   58 (331)
T cd05624           1 DDFEIIKVIGRGAFGEVAVVKMKHTER----------------------IYAMKILNKWEMLKRAETACFREERNVLVNG   58 (331)
T ss_pred             CCceEEEEEeeCCCeEEEEEEECCCCC----------------------EEEEEEEeHHHHHhhHHHHHHHHHHHHHHhC
Confidence            579999999999999999999887655                      5677665432   233345677899999999


Q ss_pred             CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCe
Q 024842          103 SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPY  182 (262)
Q Consensus       103 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~i  182 (262)
                      +|++|++++..+          ......|++|||+.+++|.+++..   ....+++..+..++.|++.||+|||+.+  |
T Consensus        59 ~~~~i~~l~~~~----------~~~~~~~lv~Ey~~gg~L~~~l~~---~~~~l~~~~~~~~~~qi~~~L~~lH~~~--i  123 (331)
T cd05624          59 DCQWITTLHYAF----------QDENYLYLVMDYYVGGDLLTLLSK---FEDRLPEDMARFYIAEMVLAIHSIHQLH--Y  123 (331)
T ss_pred             CCCCEeeEEEEE----------EcCCEEEEEEeCCCCCcHHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHHHHCC--e
Confidence            999999999887          346779999999999999998863   2345899999999999999999999988  9


Q ss_pred             eecCCCCCcEEEecCCCCCCceEEeeccceeeccccC------ccCcccCCcccchhhhhhhhhhhhhcCcccchheehe
Q 024842          183 AHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF------ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMR  256 (262)
Q Consensus       183 vH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~------~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~  256 (262)
                      +||||||+|||++.++    .+||+|||++.......      ..++..|.+||.+-.............|+||+|+++|
T Consensus       124 iHrDlkp~Nill~~~~----~~kl~DfG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwSlGvil~  199 (331)
T cd05624         124 VHRDIKPDNVLLDMNG----HIRLADFGSCLKMNQDGTVQSSVAVGTPDYISPEILQAMEDGMGKYGPECDWWSLGVCMY  199 (331)
T ss_pred             eeccCchHHEEEcCCC----CEEEEeccceeeccCCCceeeccccCCcccCCHHHHhccccCCCCCCCcccEEeeehhhh
Confidence            9999999999998766    69999999998764332      2467778888865332111111223579999999999


Q ss_pred             ecccCC
Q 024842          257 ELMFGR  262 (262)
Q Consensus       257 ~l~~G~  262 (262)
                      +|++|+
T Consensus       200 ell~g~  205 (331)
T cd05624         200 EMLYGE  205 (331)
T ss_pred             hhhhCC
Confidence            999985

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.

>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

Probab=100.00  E-value=4.6e-33  Score=234.91  Aligned_cols=190  Identities=21%  Similarity=0.324  Sum_probs=153.3

Q ss_pred             CceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc---chHHHHHHHHHHHHhhhC
Q 024842           26 NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ---NNEQLEMVREEIRVSSLF  102 (262)
Q Consensus        26 ~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~---~~~~~~~~~~E~~~l~~l  102 (262)
                      ++|++.+.||+|+||.||++++..+++                      .+|+|.+...   .......+..|+.++..+
T Consensus         1 ~~f~~~~~lG~G~~g~V~~~~~~~~~~----------------------~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l   58 (360)
T cd05627           1 DDFESLKVIGRGAFGEVRLVQKKDTGH----------------------IYAMKILRKADMLEKEQVAHIRAERDILVEA   58 (360)
T ss_pred             CCceEEEEEeeCCCEEEEEEEECCCCC----------------------EEEEEEEEHHHHhhhhhHHHHHHHHHHHHhC
Confidence            479999999999999999999887655                      5677765432   233456778899999999


Q ss_pred             CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCe
Q 024842          103 SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPY  182 (262)
Q Consensus       103 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~i  182 (262)
                      +||+|++++..+          ......|++|||+.+++|.+++.    ....+++..++.++.|++.||.|||+.+  |
T Consensus        59 ~~~~iv~~~~~~----------~~~~~~~lv~E~~~gg~L~~~l~----~~~~l~~~~~~~~~~qi~~~L~~lH~~g--i  122 (360)
T cd05627          59 DGAWVVKMFYSF----------QDKRNLYLIMEFLPGGDMMTLLM----KKDTLSEEATQFYIAETVLAIDAIHQLG--F  122 (360)
T ss_pred             CCCCEeeEEEEE----------EcCCEEEEEEeCCCCccHHHHHH----hcCCCCHHHHHHHHHHHHHHHHHHHHCC--e
Confidence            999999999887          34677999999999999999886    4456999999999999999999999998  9


Q ss_pred             eecCCCCCcEEEecCCCCCCceEEeeccceeecccc----------------------------------------CccC
Q 024842          183 AHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSK----------------------------------------FALG  222 (262)
Q Consensus       183 vH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~----------------------------------------~~~~  222 (262)
                      +||||||+|||++.++    .++|+|||++......                                        ...+
T Consensus       123 vHrDLkp~NIli~~~~----~vkL~DfG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  198 (360)
T cd05627         123 IHRDIKPDNLLLDAKG----HVKLSDFGLCTGLKKAHRTEFYRNLTHNPPSDFSFQNMNSKRKAETWKKNRRQLAYSTVG  198 (360)
T ss_pred             EccCCCHHHEEECCCC----CEEEeeccCCcccccccccccccccccCCcccccccccccccccccccccccccccccCC
Confidence            9999999999998766    6999999998744211                                        1135


Q ss_pred             cccCCcccchhhhhhhhhhhhhcCcccchheeheecccCC
Q 024842          223 QRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMFGR  262 (262)
Q Consensus       223 ~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~G~  262 (262)
                      +..|.+||.+..-++     ....|+||+|+++|||++|+
T Consensus       199 t~~Y~APE~~~~~~~-----~~~~DiwSlGvilyel~tG~  233 (360)
T cd05627         199 TPDYIAPEVFMQTGY-----NKLCDWWSLGVIMYEMLIGY  233 (360)
T ss_pred             CccccCHHHHcCCCC-----CCcceeccccceeeecccCC
Confidence            566677665533221     23479999999999999985

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul

>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

Probab=100.00  E-value=2.3e-33  Score=237.29  Aligned_cols=209  Identities=20%  Similarity=0.258  Sum_probs=163.6

Q ss_pred             hhhccCCCCCceeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc---ch
Q 024842           10 ALYDSVNGGGDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ---NN   86 (262)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~---~~   86 (262)
                      ...+..+......+..++|++.+.||+|+||.||+|++..+++                      .+|+|.+...   ..
T Consensus        27 ~~~~~~~~~~~~~~~~~~y~i~~~lG~G~fg~Vy~~~~~~~~~----------------------~~aiK~i~~~~~~~~   84 (371)
T cd05622          27 RYKDTINKIRDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRK----------------------VYAMKLLSKFEMIKR   84 (371)
T ss_pred             HhhhHhhHHhhcCcchhhcEEEEEEeecCCeEEEEEEECCCCc----------------------EEEEEEEEHHHhhhh
Confidence            3344445555667778999999999999999999999987765                      5666655322   22


Q ss_pred             HHHHHHHHHHHHhhhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHH
Q 024842           87 EQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFY  166 (262)
Q Consensus        87 ~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~  166 (262)
                      ...+.+.+|+.+++.++||||+++++.+          ......+++|||+.+++|.+++.     ...+++..+..++.
T Consensus        85 ~~~~~~~~e~~i~~~~~hp~iv~~~~~~----------~~~~~~~lv~Ey~~gg~L~~~~~-----~~~~~~~~~~~~~~  149 (371)
T cd05622          85 SDSAFFWEERDIMAFANSPWVVQLFYAF----------QDDRYLYMVMEYMPGGDLVNLMS-----NYDVPEKWARFYTA  149 (371)
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCeEEEEE----------EcCCEEEEEEcCCCCCcHHHHHH-----hcCCCHHHHHHHHH
Confidence            3345677899999999999999999887          33677999999999999998875     23489999999999


Q ss_pred             HHHHHHHHHHcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeecccc------CccCcccCCcccchhhhhhhhh
Q 024842          167 QICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSK------FALGQRRYSCRNGLLSIVLHLS  240 (262)
Q Consensus       167 ql~~~l~~lH~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~------~~~~~~~~~~~~d~~s~g~~~~  240 (262)
                      |++.||.|||+++  |+||||||+|||++.++    .+||+|||++......      ...+++.|++||.+...+.. .
T Consensus       150 qi~~aL~~LH~~~--ivHrDLkp~NIll~~~~----~ikL~DfG~a~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~-~  222 (371)
T cd05622         150 EVVLALDAIHSMG--FIHRDVKPDNMLLDKSG----HLKLADFGTCMKMNKEGMVRCDTAVGTPDYISPEVLKSQGGD-G  222 (371)
T ss_pred             HHHHHHHHHHHCC--EEeCCCCHHHEEECCCC----CEEEEeCCceeEcCcCCcccccCcccCccccCHHHHhccCCC-c
Confidence            9999999999999  99999999999998776    6999999999876432      23467788888866432211 0


Q ss_pred             hhhhcCcccchheeheecccCC
Q 024842          241 ELLSCGTVRVIQILMRELMFGR  262 (262)
Q Consensus       241 e~~~~~~v~~~g~~~~~l~~G~  262 (262)
                      ......|+||+|+++|+|++|+
T Consensus       223 ~~~~~~DiwSlGvilyell~G~  244 (371)
T cd05622         223 YYGRECDWWSVGVFLYEMLVGD  244 (371)
T ss_pred             cCCCccceeehhHHHHHHHhCC
Confidence            1223579999999999999885

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an

>KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism]

Probab=100.00  E-value=5.2e-34  Score=227.14  Aligned_cols=185  Identities=25%  Similarity=0.339  Sum_probs=147.2

Q ss_pred             ceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCCCCC
Q 024842           27 RYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSHRN  106 (262)
Q Consensus        27 ~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~h~~  106 (262)
                      .|.-.+.+|.|+||.||+|....+++                      .+|||+...+...    --.|+++++.++|||
T Consensus        25 ~~~~~~liG~GsFg~Vyq~~~~e~~~----------------------~vAIKKv~~d~r~----knrEl~im~~l~HpN   78 (364)
T KOG0658|consen   25 SYEAVRLIGSGSFGVVYQAKLRETEE----------------------EVAIKKVLQDKRY----KNRELQIMRKLDHPN   78 (364)
T ss_pred             EEEeeEEEeecccceEEEEEEcCCCc----------------------eeEEEEecCCCCc----CcHHHHHHHhcCCcC
Confidence            48889999999999999999887644                      7888887765432    236899999999999


Q ss_pred             ccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeeecC
Q 024842          107 LLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHND  186 (262)
Q Consensus       107 i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~d  186 (262)
                      |+++.-+|....     ..+.-...+||||++ .+|.+.++..-..+..++.-.++.+++||++||.|||+.+  |+|||
T Consensus        79 IV~L~~~f~~~~-----~~d~~~lnlVleymP-~tL~~~~r~~~~~~~~mp~~~iKLYt~Qlfrgl~yLh~~~--IcHRD  150 (364)
T KOG0658|consen   79 IVRLLYFFSSST-----ESDEVYLNLVLEYMP-ETLYRVIRHYTRANQRMPLLEIKLYTYQLFRGLAYLHSHG--ICHRD  150 (364)
T ss_pred             eeeEEEEEEecC-----CCchhHHHHHHHhch-HHHHHHHHHHhhcCCCCceeeeHHHHHHHHHHHHHHHhcC--cccCC
Confidence            999988774311     111234567999876 4888888765555677999999999999999999999988  99999


Q ss_pred             CCCCcEEEecCCCCCCceEEeeccceeeccccC----------------ccCcccCCcccchhhhhhhhhhhhhcCcc
Q 024842          187 VKPGNILITCRKGQPPLAILMDFGSARPAQSKF----------------ALGQRRYSCRNGLLSIVLHLSELLSCGTV  248 (262)
Q Consensus       187 ikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~----------------~~~~~~~~~~~d~~s~g~~~~e~~~~~~v  248 (262)
                      |||.|+|++.+..   .+||+|||.|+.....+                ..+...|++..|+||.||.+.|++-.+.+
T Consensus       151 IKPqNlLvD~~tg---~LKicDFGSAK~L~~~epniSYicSRyYRaPELifga~~Yt~~IDiWSaGCV~aELl~g~pl  225 (364)
T KOG0658|consen  151 IKPQNLLVDPDTG---VLKICDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTSIDIWSAGCVMAELLKGQPL  225 (364)
T ss_pred             CChheEEEcCCCC---eEEeccCCcceeeccCCCceeEEEeccccCHHHHcCccccCceeEEhhhhHHHHHHhcCCcc
Confidence            9999999986643   79999999999765433                25777888888999999999998864333

>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=7e-33  Score=231.18  Aligned_cols=196  Identities=23%  Similarity=0.274  Sum_probs=154.5

Q ss_pred             CceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc---chHHHHHHHHHHHHhhhC
Q 024842           26 NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ---NNEQLEMVREEIRVSSLF  102 (262)
Q Consensus        26 ~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~---~~~~~~~~~~E~~~l~~l  102 (262)
                      ++|++.+.||+|+||.||++++..+++                      .+|+|.+...   .....+.+.+|..+++.+
T Consensus         1 ~~y~~~~~lG~G~~g~V~~~~~~~~~~----------------------~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~   58 (331)
T cd05597           1 DDFEILKVIGRGAFGEVAVVKMKNTGQ----------------------VYAMKILNKWEMLKRAETACFREERDVLVNG   58 (331)
T ss_pred             CCceEEEEEEecCCeEEEEEEECCCCC----------------------EEEEEEEEHHHHhhhhhHHHHHHHHHHHHhC
Confidence            479999999999999999999887655                      5777765432   233345678899999999


Q ss_pred             CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCe
Q 024842          103 SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPY  182 (262)
Q Consensus       103 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~i  182 (262)
                      +|+||++++..+          ......|++|||+.+++|.+++..   ....+++..++.++.|++.||+|||+++  |
T Consensus        59 ~~~~i~~~~~~~----------~~~~~~~lv~e~~~g~~L~~~l~~---~~~~~~~~~~~~~~~qi~~~l~~lH~~~--i  123 (331)
T cd05597          59 DRRWITNLHYAF----------QDENNLYLVMDYYVGGDLLTLLSK---FEDRLPEDMARFYLAEMVLAIDSVHQLG--Y  123 (331)
T ss_pred             CCCCCCceEEEE----------ecCCeEEEEEecCCCCcHHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHHHhCC--e
Confidence            999999999887          346789999999999999998852   2345899999999999999999999998  9


Q ss_pred             eecCCCCCcEEEecCCCCCCceEEeeccceeeccccC------ccCcccCCcccchhhhhhhhhhhhhcCcccchheehe
Q 024842          183 AHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF------ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMR  256 (262)
Q Consensus       183 vH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~------~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~  256 (262)
                      +||||||+|||++.++    .++|+|||++.......      ..++..|.+||.+..............|+|++|+++|
T Consensus       124 vH~dlkp~Nill~~~~----~~kl~Dfg~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~~l~  199 (331)
T cd05597         124 VHRDIKPDNVLLDKNG----HIRLADFGSCLRLLADGTVQSNVAVGTPDYISPEILQAMEDGKGRYGPECDWWSLGVCMY  199 (331)
T ss_pred             EECCCCHHHEEECCCC----CEEEEECCceeecCCCCCccccceeccccccCHHHHhhccccccCCCCcceeehhhhHHH
Confidence            9999999999998776    69999999987654322      2467778888766432111111222468999999999


Q ss_pred             ecccCC
Q 024842          257 ELMFGR  262 (262)
Q Consensus       257 ~l~~G~  262 (262)
                      +|++|+
T Consensus       200 el~~g~  205 (331)
T cd05597         200 EMLYGE  205 (331)
T ss_pred             HHhhCC
Confidence            999885

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,

>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

Probab=100.00  E-value=9.3e-33  Score=230.41  Aligned_cols=196  Identities=23%  Similarity=0.320  Sum_probs=156.5

Q ss_pred             CceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc---chHHHHHHHHHHHHhhhC
Q 024842           26 NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ---NNEQLEMVREEIRVSSLF  102 (262)
Q Consensus        26 ~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~---~~~~~~~~~~E~~~l~~l  102 (262)
                      ++|++.+.||+|+||.||++.+..+++                      .+|+|.+...   .....+.+.+|+.+++.+
T Consensus         1 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~----------------------~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~   58 (330)
T cd05601           1 KDFDVKSLVGRGHFGEVQVVREKATGD----------------------IYAMKVMKKSVLLAQETVSFFEEERDILSIS   58 (330)
T ss_pred             CCceEEEEEEeccCEEEEEEEECCCCC----------------------EEEEEEEEHHHhhhhhHHHHHHHHHHHHHhC
Confidence            479999999999999999999887655                      5677766543   223446678899999999


Q ss_pred             CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCe
Q 024842          103 SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPY  182 (262)
Q Consensus       103 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~i  182 (262)
                      +|+||++++..+          ......+++|||+.+++|.+++..   ....+++..++.++.|++.||.|||+.+  |
T Consensus        59 ~~~~i~~~~~~~----------~~~~~~~lv~e~~~~~~L~~~l~~---~~~~l~~~~~~~~~~qi~~aL~~lH~~~--i  123 (330)
T cd05601          59 NSPWIPQLQYAF----------QDKDNLYLVMEYQPGGDLLSLLNR---YEDQFDEDMAQFYLAELVLAIHSVHQMG--Y  123 (330)
T ss_pred             CCCCCcceeeEE----------ecCCeEEEEECCCCCCCHHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHHHHCC--e
Confidence            999999998877          335679999999999999998863   2246999999999999999999999998  9


Q ss_pred             eecCCCCCcEEEecCCCCCCceEEeeccceeeccccC------ccCcccCCcccchhhhhhh-hhhhhhcCcccchheeh
Q 024842          183 AHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF------ALGQRRYSCRNGLLSIVLH-LSELLSCGTVRVIQILM  255 (262)
Q Consensus       183 vH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~------~~~~~~~~~~~d~~s~g~~-~~e~~~~~~v~~~g~~~  255 (262)
                      +||||||+||+++.++    .+||+|||++.......      ..++..|.+||.+...... ........|+|++|+++
T Consensus       124 ~H~Dlkp~NIll~~~~----~~kL~Dfg~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il  199 (330)
T cd05601         124 VHRDIKPENVLIDRTG----HIKLADFGSAARLTANKMVNSKLPVGTPDYIAPEVLTTMNGDGKGTYGVECDWWSLGVIA  199 (330)
T ss_pred             EcccCchHheEECCCC----CEEeccCCCCeECCCCCceeeecccCCccccCHHHhccccccccCCCCCcceeeccccee
Confidence            9999999999998776    69999999998765332      2466778888866432211 11122347999999999


Q ss_pred             eecccCC
Q 024842          256 RELMFGR  262 (262)
Q Consensus       256 ~~l~~G~  262 (262)
                      |+|++|+
T Consensus       200 ~el~~g~  206 (330)
T cd05601         200 YEMIYGR  206 (330)
T ss_pred             eeeccCC
Confidence            9999985

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor

>KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=3.8e-34  Score=215.71  Aligned_cols=193  Identities=23%  Similarity=0.277  Sum_probs=158.8

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc---chHHHHHHHHHHHHhhh
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ---NNEQLEMVREEIRVSSL  101 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~---~~~~~~~~~~E~~~l~~  101 (262)
                      -++|++++.||+|.||.||+|+...+.-                      .+|+|++...   .....+++.+|+++.+.
T Consensus        21 l~dfeigr~LgkgkFG~vYlarekks~~----------------------IvalKVlfKsqi~~~~v~~qlrREiEIqs~   78 (281)
T KOG0580|consen   21 LDDFEIGRPLGKGKFGNVYLAREKKSLF----------------------IVALKVLFKSQILKTQVEHQLRREIEIQSH   78 (281)
T ss_pred             hhhccccccccCCccccEeEeeeccCCc----------------------EEEEeeeeHHHHHHhcchhhhhheeEeecc
Confidence            5689999999999999999999876644                      5666655433   23335778999999999


Q ss_pred             CCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCC
Q 024842          102 FSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPP  181 (262)
Q Consensus       102 l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~  181 (262)
                      |+||||++++++|..          ..+.|+++||...|++++.+..  .....+++...+.++.|++.||.|+|.++  
T Consensus        79 L~hpnilrlY~~fhd----------~~riyLilEya~~gel~k~L~~--~~~~~f~e~~~a~Yi~q~A~Al~y~h~k~--  144 (281)
T KOG0580|consen   79 LRHPNILRLYGYFHD----------SKRIYLILEYAPRGELYKDLQE--GRMKRFDEQRAATYIKQLANALLYCHLKR--  144 (281)
T ss_pred             cCCccHHhhhhheec----------cceeEEEEEecCCchHHHHHHh--cccccccccchhHHHHHHHHHHHHhccCC--
Confidence            999999999999953          6789999999999999987752  23456999999999999999999999988  


Q ss_pred             eeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC---ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheec
Q 024842          182 YAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF---ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMREL  258 (262)
Q Consensus       182 ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~---~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l  258 (262)
                      |+||||||+|+|++..+    .+||+|||.+...+++.   ..++..|.+||.+-+.+....     -|+|++|++.||+
T Consensus       145 VIhRdiKpenlLlg~~~----~lkiAdfGwsV~~p~~kR~tlcgt~dyl~pEmv~~~~hd~~-----Vd~w~lgvl~yef  215 (281)
T KOG0580|consen  145 VIHRDIKPENLLLGSAG----ELKIADFGWSVHAPSNKRKTLCGTLDYLPPEMVEGRGHDKF-----VDLWSLGVLCYEF  215 (281)
T ss_pred             cccCCCCHHHhccCCCC----CeeccCCCceeecCCCCceeeecccccCCHhhcCCCCccch-----hhHHHHHHHHHHH
Confidence            99999999999999887    69999999998876433   468888888887766655433     3788888888887


Q ss_pred             ccCC
Q 024842          259 MFGR  262 (262)
Q Consensus       259 ~~G~  262 (262)
                      +.|.
T Consensus       216 lvg~  219 (281)
T KOG0580|consen  216 LVGL  219 (281)
T ss_pred             HhcC
Confidence            7763

>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

Probab=100.00  E-value=1.2e-32  Score=229.09  Aligned_cols=184  Identities=23%  Similarity=0.250  Sum_probs=148.8

Q ss_pred             EEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc---chHHHHHHHHHHHHhhhCCCCCcc
Q 024842           32 RQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ---NNEQLEMVREEIRVSSLFSHRNLL  108 (262)
Q Consensus        32 ~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~---~~~~~~~~~~E~~~l~~l~h~~i~  108 (262)
                      +.||+|+||.||+|++..+++                      .+|+|++...   .......+.+|+.+++.++||||+
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~----------------------~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~i~   58 (323)
T cd05571           1 KLLGKGTFGKVILVREKATGK----------------------YYAMKILKKEVIIAKDEVAHTLTESRVLQNTRHPFLT   58 (323)
T ss_pred             CeeeeCCCeEEEEEEECCCCC----------------------EEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCC
Confidence            369999999999999887655                      5677765432   233345677899999999999999


Q ss_pred             chhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeeecCCC
Q 024842          109 PLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVK  188 (262)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~dik  188 (262)
                      +++..+          ......+++|||+.+++|.+++.    ....+++..++.++.|++.||+|||+.+  |+|||||
T Consensus        59 ~~~~~~----------~~~~~~~lv~e~~~~~~L~~~l~----~~~~~~~~~~~~~~~qi~~~L~~lH~~~--ivHrDlk  122 (323)
T cd05571          59 ALKYSF----------QTHDRLCFVMEYANGGELFFHLS----RERVFSEDRARFYGAEIVSALGYLHSCD--VVYRDLK  122 (323)
T ss_pred             CEEEEE----------EcCCEEEEEEeCCCCCcHHHHHH----HcCCCCHHHHHHHHHHHHHHHHHHHhCC--eEeCCCC
Confidence            998877          34678999999999999988876    4456899999999999999999999999  9999999


Q ss_pred             CCcEEEecCCCCCCceEEeeccceeecccc-----CccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecccCC
Q 024842          189 PGNILITCRKGQPPLAILMDFGSARPAQSK-----FALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMFGR  262 (262)
Q Consensus       189 p~Nill~~~~~~~~~~kl~Dfg~a~~~~~~-----~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~G~  262 (262)
                      |+||+++.++    .+||+|||++......     ...++..|.+||.+..-.     .....|+||+|+++|||++|+
T Consensus       123 p~NIll~~~~----~~kl~DfG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-----~~~~~DiwSlG~il~elltg~  192 (323)
T cd05571         123 LENLMLDKDG----HIKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLEDND-----YGRAVDWWGLGVVMYEMMCGR  192 (323)
T ss_pred             HHHEEECCCC----CEEEeeCCCCcccccCCCcccceecCccccChhhhcCCC-----CCccccCcccchhhhhhhcCC
Confidence            9999998776    6999999998753221     134677888888664322     223579999999999999985

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be

>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

Probab=100.00  E-value=8.7e-33  Score=233.78  Aligned_cols=199  Identities=19%  Similarity=0.247  Sum_probs=156.4

Q ss_pred             ceeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc---chHHHHHHHHHH
Q 024842           20 DVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ---NNEQLEMVREEI   96 (262)
Q Consensus        20 ~~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~---~~~~~~~~~~E~   96 (262)
                      ...+..++|++.+.||+|+||.||++++..+++                      .+|+|.+...   .......+.+|+
T Consensus        37 ~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~----------------------~~aiK~~~~~~~~~~~~~~~~~~e~   94 (370)
T cd05596          37 KLRMKAEDFDVIKVIGRGAFGEVQLVRHKSSKQ----------------------VYAMKLLSKFEMIKRSDSAFFWEER   94 (370)
T ss_pred             cCCCCHHHcEEEEEEeeCCCEEEEEEEECCCCC----------------------EEEEEEEEHHHhhhhhhHHHHHHHH
Confidence            444567899999999999999999999887655                      5777766432   223345577899


Q ss_pred             HHhhhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHH
Q 024842           97 RVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMH  176 (262)
Q Consensus        97 ~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH  176 (262)
                      .+++.++||||+++++.+          ......+++|||+.+++|.+++.     ...+++..+..++.|++.||.|||
T Consensus        95 ~il~~~~h~~iv~~~~~~----------~~~~~~~lv~Ey~~gg~L~~~l~-----~~~l~~~~~~~~~~qi~~aL~~LH  159 (370)
T cd05596          95 DIMAHANSEWIVQLHYAF----------QDDKYLYMVMEYMPGGDLVNLMS-----NYDIPEKWARFYTAEVVLALDAIH  159 (370)
T ss_pred             HHHHhCCCCCcceEEEEE----------ecCCEEEEEEcCCCCCcHHHHHH-----hcCCCHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999877          34667999999999999998875     234889999999999999999999


Q ss_pred             cCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeecccc------CccCcccCCcccchhhhhhhhhhhhhcCcccc
Q 024842          177 SLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSK------FALGQRRYSCRNGLLSIVLHLSELLSCGTVRV  250 (262)
Q Consensus       177 ~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~------~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~  250 (262)
                      +.+  |+||||||+|||++.++    .+||+|||++......      ...+++.|.+||-+...... .......|+||
T Consensus       160 ~~~--ivHrDLkp~NILl~~~~----~~kL~DfG~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~-~~~~~~~DiwS  232 (370)
T cd05596         160 SMG--FIHRDVKPDNMLLDKSG----HLKLADFGTCMKMDANGMVRCDTAVGTPDYISPEVLKSQGGD-GYYGRECDWWS  232 (370)
T ss_pred             HCC--eeccCCCHHHEEEcCCC----CEEEEeccceeeccCCCcccCCCCCCCcCeECHHHhccCCCC-CCCCCceeeee
Confidence            988  99999999999998776    6999999999876432      23467777777765332110 11223478999


Q ss_pred             hheeheecccCC
Q 024842          251 IQILMRELMFGR  262 (262)
Q Consensus       251 ~g~~~~~l~~G~  262 (262)
                      +|+++|+|++|+
T Consensus       233 lGvilyelltG~  244 (370)
T cd05596         233 VGVFLYEMLVGD  244 (370)
T ss_pred             hhHHHHHHHhCC
Confidence            999999988885

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in

>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

Probab=100.00  E-value=2.1e-32  Score=228.45  Aligned_cols=193  Identities=24%  Similarity=0.298  Sum_probs=152.0

Q ss_pred             ceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc----chHHHHHHHHHHHHhhhC
Q 024842           27 RYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ----NNEQLEMVREEIRVSSLF  102 (262)
Q Consensus        27 ~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~----~~~~~~~~~~E~~~l~~l  102 (262)
                      +|++.+.||+|+||.||++++.....                   .+..+|+|.+...    .....+.+..|+.+++.+
T Consensus         1 ~y~~~~~lg~G~~g~Vy~~~~~~~~~-------------------~~~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l   61 (332)
T cd05614           1 NFELLKVLGTGAYGKVFLVRKVTGHD-------------------TGKLYAMKVLQKAALVQKAKTVEHTRTERNVLEHV   61 (332)
T ss_pred             CceEEEEEeecCCEEEEEEEEcccCC-------------------CCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHHhc
Confidence            58999999999999999998754221                   2346788766432    223345678899999999


Q ss_pred             -CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCC
Q 024842          103 -SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPP  181 (262)
Q Consensus       103 -~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~  181 (262)
                       .|++|++++..+          ......+++|||+.+++|.+++.    ....+++..++.++.|++.||.|||+.+  
T Consensus        62 ~~~~~i~~~~~~~----------~~~~~~~lv~e~~~~g~L~~~l~----~~~~~~~~~~~~~~~qi~~~l~~lH~~~--  125 (332)
T cd05614          62 RQSPFLVTLHYAF----------QTEAKLHLILDYVSGGEMFTHLY----QRDNFSEDEVRFYSGEIILALEHLHKLG--  125 (332)
T ss_pred             cCCCCcccEEEEE----------ecCCEEEEEEeCCCCCcHHHHHH----HcCCCCHHHHHHHHHHHHHHHHHHHHCC--
Confidence             489999998877          34667899999999999998876    4456999999999999999999999998  


Q ss_pred             eeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC------ccCcccCCcccchhhhhhhhhhhhhcCcccchheeh
Q 024842          182 YAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF------ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILM  255 (262)
Q Consensus       182 ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~------~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~  255 (262)
                      |+||||||+|||++.++    .+||+|||++.......      ..++..|++||.+....    ......|+||+|+++
T Consensus       126 ivHrDlkp~Nili~~~~----~~kl~DfG~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~----~~~~~~DiwslG~il  197 (332)
T cd05614         126 IVYRDIKLENILLDSEG----HVVLTDFGLSKEFLSEEKERTYSFCGTIEYMAPEIIRGKG----GHGKAVDWWSLGILI  197 (332)
T ss_pred             cEecCCCHHHeEECCCC----CEEEeeCcCCccccccCCCccccccCCccccCHHHhcCCC----CCCCccccccchhhh
Confidence            99999999999998776    69999999987643221      24677788887653211    112347999999999


Q ss_pred             eecccCC
Q 024842          256 RELMFGR  262 (262)
Q Consensus       256 ~~l~~G~  262 (262)
                      |+|++|+
T Consensus       198 ~elltg~  204 (332)
T cd05614         198 FELLTGA  204 (332)
T ss_pred             hhhhcCC
Confidence            9999985

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only]

Probab=100.00  E-value=3e-33  Score=222.68  Aligned_cols=190  Identities=26%  Similarity=0.341  Sum_probs=151.5

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchH--HHHHHHHHHHHhhhC
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNE--QLEMVREEIRVSSLF  102 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~--~~~~~~~E~~~l~~l  102 (262)
                      ...|..+++||+|.||.||+|+...+++                      .||+|++......  ......+|+.+++.+
T Consensus        10 ~~~~~~~eklGeGtyg~Vykar~~~~g~----------------------~VALKkirl~~~~EG~P~taiREisllk~L   67 (323)
T KOG0594|consen   10 MFDYEKVEKLGEGTYGVVYKARSKRTGK----------------------FVALKKIRLEFEEEGVPSTAIREISLLKRL   67 (323)
T ss_pred             HHHHHHHHHhCCCCceEEEEEEEecCCC----------------------EEEEEEEeccccccCCCchhhHHHHHHHHh
Confidence            4468888899999999999999998765                      6888887665432  345567899999999


Q ss_pred             CCCC-ccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCC
Q 024842          103 SHRN-LLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPP  181 (262)
Q Consensus       103 ~h~~-i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~  181 (262)
                      +|+| |+.+++.+....    ..+....+++++||. ..+|.++++........++...++.+++||+.||+|||+++  
T Consensus        68 ~~~~~iv~L~dv~~~~~----~~~~~~~l~lvfe~~-d~DL~~ymd~~~~~~~g~~~~~ik~~m~Qll~gl~~~H~~~--  140 (323)
T KOG0594|consen   68 SHANHIVRLHDVIHTSN----NHRGIGKLYLVFEFL-DRDLKKYMDSLPKKPQGLPPRLIKSFMRQLLRGLAFLHSHG--  140 (323)
T ss_pred             CCCcceEEEEeeeeecc----cccccceEEEEEEee-cccHHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHhCC--
Confidence            9999 999999875211    122345789999975 46888888754432245788999999999999999999999  


Q ss_pred             eeecCCCCCcEEEecCCCCCCceEEeeccceeeccc-----------------cCccCcccCCcccchhhhhhhhhhhhh
Q 024842          182 YAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQS-----------------KFALGQRRYSCRNGLLSIVLHLSELLS  244 (262)
Q Consensus       182 ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~-----------------~~~~~~~~~~~~~d~~s~g~~~~e~~~  244 (262)
                      |+||||||.|||++..+    .+||+|||+|+-+.-                 +...+...|+.+.|+||+||++.||++
T Consensus       141 IlHRDLKPQNlLi~~~G----~lKlaDFGlAra~~ip~~~yt~evvTlWYRaPEvLlGs~~Ys~~vDiWs~GcIfaEm~~  216 (323)
T KOG0594|consen  141 ILHRDLKPQNLLISSSG----VLKLADFGLARAFSIPMRTYTPEVVTLWYRAPEVLLGSTSYSTSVDIWSLGCIFAEMFT  216 (323)
T ss_pred             eecccCCcceEEECCCC----cEeeeccchHHHhcCCcccccccEEEeeccCHHHhcCCCcCCCCcchHhHHHHHHHHHh
Confidence            99999999999998866    799999999985431                 113577789999999999999999988


Q ss_pred             cCc
Q 024842          245 CGT  247 (262)
Q Consensus       245 ~~~  247 (262)
                      ...
T Consensus       217 ~~~  219 (323)
T KOG0594|consen  217 RRP  219 (323)
T ss_pred             CCC
Confidence            543

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=100.00  E-value=2.8e-32  Score=237.66  Aligned_cols=195  Identities=18%  Similarity=0.234  Sum_probs=154.8

Q ss_pred             CceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCCCC
Q 024842           26 NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSHR  105 (262)
Q Consensus        26 ~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~h~  105 (262)
                      ..|.+.+.||+|++|.||+|.+..+.                     +..+++|............+..|+.+++.++||
T Consensus        67 ~~y~~~~~lg~G~~g~vy~a~~~~~~---------------------~~~vv~K~~~~~~~~~~~~~~~E~~~l~~l~Hp  125 (478)
T PTZ00267         67 HMYVLTTLVGRNPTTAAFVATRGSDP---------------------KEKVVAKFVMLNDERQAAYARSELHCLAACDHF  125 (478)
T ss_pred             eeEEEEEEEEeCCCcEEEEEEEcCCC---------------------CeEEEEEEcccCCHHHHHHHHHHHHHHHhCCCC
Confidence            35999999999999999999976652                     225677766555555556778899999999999


Q ss_pred             CccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeeec
Q 024842          106 NLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHN  185 (262)
Q Consensus       106 ~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~  185 (262)
                      ||+++++.+          ...+..|++|||+.+++|.+++........++++..+..++.|++.||.|||+.+  |+||
T Consensus       126 niv~~~~~~----------~~~~~~~lv~E~~~gg~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH~~~--ivHr  193 (478)
T PTZ00267        126 GIVKHFDDF----------KSDDKLLLIMEYGSGGDLNKQIKQRLKEHLPFQEYEVGLLFYQIVLALDEVHSRK--MMHR  193 (478)
T ss_pred             CEeEEEEEE----------EECCEEEEEEECCCCCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCC--EEEC
Confidence            999999987          3467899999999999999988655445567999999999999999999999988  9999


Q ss_pred             CCCCCcEEEecCCCCCCceEEeeccceeeccccC-------ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheec
Q 024842          186 DVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-------ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMREL  258 (262)
Q Consensus       186 dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-------~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l  258 (262)
                      ||||+|||++.++    .+||+|||++.......       ..+++.|.+||.+....     .....|+||+|+++|+|
T Consensus       194 Dlkp~NIll~~~~----~~kL~DFgla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-----~~~~~Dv~slG~~l~el  264 (478)
T PTZ00267        194 DLKSANIFLMPTG----IIKLGDFGFSKQYSDSVSLDVASSFCGTPYYLAPELWERKR-----YSKKADMWSLGVILYEL  264 (478)
T ss_pred             CcCHHhEEECCCC----cEEEEeCcCceecCCccccccccccCCCccccCHhHhCCCC-----CCcHHhHHHHHHHHHHH
Confidence            9999999998766    69999999998764321       23677788877443221     11235777777777777


Q ss_pred             ccCC
Q 024842          259 MFGR  262 (262)
Q Consensus       259 ~~G~  262 (262)
                      ++|+
T Consensus       265 ~tg~  268 (478)
T PTZ00267        265 LTLH  268 (478)
T ss_pred             HhCC
Confidence            7764

>KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription]

Probab=100.00  E-value=1e-32  Score=215.44  Aligned_cols=195  Identities=25%  Similarity=0.319  Sum_probs=161.3

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccch--HHHHHHHHHHHHhhhC
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNN--EQLEMVREEIRVSSLF  102 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~--~~~~~~~~E~~~l~~l  102 (262)
                      -..|+....||+|.+|.||+|....++..                  -.+.+|+|+++..+.  .......+|+.+++.+
T Consensus        23 l~~ye~ig~Ig~GTYG~VykA~~~~~n~k------------------r~k~yAiKkfk~~kd~tGiS~SAcREiaL~REl   84 (438)
T KOG0666|consen   23 LFEYEGIGKIGRGTYGKVYKAVRKNTNDK------------------RTKEYAIKKFKGEKDGTGISMSACREIALLREL   84 (438)
T ss_pred             HHHhhccceecccccceeeEeeeccCCcc------------------cchhhHHHHHhccCCCCCcCHHHHHHHHHHHHh
Confidence            45799999999999999999966554331                  134899999986632  2235567899999999


Q ss_pred             CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhc-CCCCCHHHHHHHHHHHHHHHHHHHcCCCC
Q 024842          103 SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTK-KEFFSTSDVLQIFYQICAGLKHMHSLEPP  181 (262)
Q Consensus       103 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~-~~~~~~~~~~~i~~ql~~~l~~lH~~~~~  181 (262)
                      +|||++.+..+|+         +.....+++++|.+ -+|.+.+...... ...++...++.+++||+.|+.|||++.  
T Consensus        85 ~h~nvi~Lv~Vfl---------~~d~~v~l~fdYAE-hDL~~II~fHr~~~~~~lp~~mvKsilwQil~Gv~YLH~NW--  152 (438)
T KOG0666|consen   85 KHPNVISLVKVFL---------SHDKKVWLLFDYAE-HDLWHIIKFHRASKAKQLPRSMVKSILWQILDGVHYLHSNW--  152 (438)
T ss_pred             cCCcchhHHHHHh---------ccCceEEEEehhhh-hhHHHHHHHhccchhccCCHHHHHHHHHHHHhhhHHHhhhh--
Confidence            9999999999997         33677899999755 5888888765432 356899999999999999999999999  


Q ss_pred             eeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC--------------------ccCcccCCcccchhhhhhhhhh
Q 024842          182 YAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF--------------------ALGQRRYSCRNGLLSIVLHLSE  241 (262)
Q Consensus       182 ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~--------------------~~~~~~~~~~~d~~s~g~~~~e  241 (262)
                      |+||||||.|||+..++++...+||+|||+++.+.++.                    ..|...|+++.|+|++||++.|
T Consensus       153 vlHRDLKPaNIlvmgdgperG~VKIaDlGlaR~~~~plkpl~s~d~VVVTiWYRAPELLLGa~hYT~AiDvWAiGCIfaE  232 (438)
T KOG0666|consen  153 VLHRDLKPANILVMGDGPERGRVKIADLGLARLFNNPLKPLASLDPVVVTIWYRAPELLLGARHYTKAIDVWAIGCIFAE  232 (438)
T ss_pred             eeeccCCcceEEEeccCCccCeeEeecccHHHHhhccccccccCCceEEEEEecChHHhcccccccchhhhHHHHHHHHH
Confidence            99999999999999998777899999999999776543                    3688899999999999999999


Q ss_pred             hhhcCccc
Q 024842          242 LLSCGTVR  249 (262)
Q Consensus       242 ~~~~~~v~  249 (262)
                      +++...+|
T Consensus       233 lLtl~PlF  240 (438)
T KOG0666|consen  233 LLTLEPLF  240 (438)
T ss_pred             HHccCccc
Confidence            99865553

>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

Probab=100.00  E-value=2.8e-32  Score=227.69  Aligned_cols=196  Identities=22%  Similarity=0.280  Sum_probs=153.1

Q ss_pred             CceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhc---cchHHHHHHHHHHHHhhhC
Q 024842           26 NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLI---QNNEQLEMVREEIRVSSLF  102 (262)
Q Consensus        26 ~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~---~~~~~~~~~~~E~~~l~~l  102 (262)
                      ++|++.+.||+|+||.||++++..+++                      .+++|.+..   ........+.+|+.++..+
T Consensus         1 ~~y~~~~~lG~G~fg~V~~~~~~~~~~----------------------~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~   58 (332)
T cd05623           1 EDFEILKVIGRGAFGEVAVVKLKNADK----------------------VFAMKILNKWEMLKRAETACFREERDVLVNG   58 (332)
T ss_pred             CCceEEEEEEeCCCeEEEEEEECCCCC----------------------EEEEEEEeHHHHHHhhHHHHHHHHHHHHhhC
Confidence            479999999999999999999877655                      566665532   1223345578899999999


Q ss_pred             CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCe
Q 024842          103 SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPY  182 (262)
Q Consensus       103 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~i  182 (262)
                      +|++|++++..+          ......+++|||+.+++|.+++..   ....+++..++.++.|++.||.|||+.+  |
T Consensus        59 ~~~~i~~~~~~~----------~~~~~~~lv~ey~~~g~L~~~l~~---~~~~l~~~~~~~~~~qi~~al~~lH~~~--i  123 (332)
T cd05623          59 DNQWITTLHYAF----------QDENNLYLVMDYYVGGDLLTLLSK---FEDRLPEDMARFYLAEMVIAIDSVHQLH--Y  123 (332)
T ss_pred             CCCCEeeEEEEE----------ecCCEEEEEEeccCCCcHHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHHHHCC--e
Confidence            999999999887          346779999999999999998862   2345899999999999999999999998  9


Q ss_pred             eecCCCCCcEEEecCCCCCCceEEeeccceeecccc------CccCcccCCcccchhhhhhhhhhhhhcCcccchheehe
Q 024842          183 AHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSK------FALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMR  256 (262)
Q Consensus       183 vH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~------~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~  256 (262)
                      +||||||+|||++.++    .++|+|||++......      ...++..|.+||.+.+...-........|+||+|+++|
T Consensus       124 iHrDlkp~Nili~~~~----~~kL~DfG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DvwSlGvil~  199 (332)
T cd05623         124 VHRDIKPDNILMDMNG----HIRLADFGSCLKLMEDGTVQSSVAVGTPDYISPEILQAMEDGKGKYGPECDWWSLGVCMY  199 (332)
T ss_pred             EecCCCHHHEEECCCC----CEEEeecchheecccCCcceecccccCccccCHHHHhccccCCCCCCCcCCEEeeHHHHH
Confidence            9999999999998766    6999999998764322      13467778888765432110111223479999999999


Q ss_pred             ecccCC
Q 024842          257 ELMFGR  262 (262)
Q Consensus       257 ~l~~G~  262 (262)
                      ||++|+
T Consensus       200 ell~g~  205 (332)
T cd05623         200 EMLYGE  205 (332)
T ss_pred             HHhcCC
Confidence            999885

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw

>KOG0584 consensus Serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=5.3e-33  Score=234.58  Aligned_cols=196  Identities=23%  Similarity=0.282  Sum_probs=159.2

Q ss_pred             Cce-EEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhc-cchHHHHHHHHHHHHhhhCC
Q 024842           26 NRY-RILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLI-QNNEQLEMVREEIRVSSLFS  103 (262)
Q Consensus        26 ~~y-~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~-~~~~~~~~~~~E~~~l~~l~  103 (262)
                      .+| +....||+|.|-+||+|.|..++..+|-                   -.+|.-.. ......+++..|+.+|+.|+
T Consensus        39 gRy~k~~evLGrGafKtVYka~De~~giEVAW-------------------nqvk~~d~~q~~~~leR~~~Ev~lLKsL~   99 (632)
T KOG0584|consen   39 GRYLKFDEVLGRGAFKTVYKAFDEEEGIEVAW-------------------NQVKIRDVTQSPEELERLYSEVHLLKSLK   99 (632)
T ss_pred             CceeehhhhcccccceeeeeccccccchhhHH-------------------HHHhHHHhhcChHHHHHHHHHHHHHccCC
Confidence            444 6677899999999999999888775542                   23332222 24555789999999999999


Q ss_pred             CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCee
Q 024842          104 HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYA  183 (262)
Q Consensus       104 h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~iv  183 (262)
                      ||||++++..|+.        .......+++|.+..|+|..+.+    +-...+...++.|++||+.||.|||++.|||+
T Consensus       100 H~NIirfy~SW~d--------~~n~~in~iTEL~TSGtLr~Y~k----k~~~vn~kaik~W~RQILkGL~yLHs~~PPII  167 (632)
T KOG0584|consen  100 HPNIIRFYDSWVD--------TDNKTINFITELFTSGTLREYRK----KHRRVNIKAIKSWCRQILKGLVYLHSQDPPII  167 (632)
T ss_pred             CCceeeeeeheec--------CCCceeeeeeecccCCcHHHHHH----HhccCCHHHHHHHHHHHHHHhhhhhcCCCCcc
Confidence            9999999999963        33466889999999999999987    44448889999999999999999999999999


Q ss_pred             ecCCCCCcEEEecCCCCCCceEEeeccceeeccccC---ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheeccc
Q 024842          184 HNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF---ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMF  260 (262)
Q Consensus       184 H~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~---~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~  260 (262)
                      |||||.+||+|+.+.+   .+||+|+|+|.......   +.|||.|++||-.- ..+.  |   .-|||+||++|+||+|
T Consensus       168 HRDLKCDNIFinG~~G---~VKIGDLGLAtl~r~s~aksvIGTPEFMAPEmYE-E~Yn--E---~VDVYaFGMCmLEMvT  238 (632)
T KOG0584|consen  168 HRDLKCDNIFVNGNLG---EVKIGDLGLATLLRKSHAKSVIGTPEFMAPEMYE-ENYN--E---LVDVYAFGMCMLEMVT  238 (632)
T ss_pred             ccccccceEEEcCCcC---ceeecchhHHHHhhccccceeccCccccChHHHh-hhcc--h---hhhhhhhhHHHHHHHh
Confidence            9999999999986543   69999999999776543   57999999988553 3322  2   3589999999999988


Q ss_pred             C
Q 024842          261 G  261 (262)
Q Consensus       261 G  261 (262)
                      +
T Consensus       239 ~  239 (632)
T KOG0584|consen  239 S  239 (632)
T ss_pred             c
Confidence            6

>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

Probab=99.98  E-value=3.3e-32  Score=222.69  Aligned_cols=190  Identities=23%  Similarity=0.322  Sum_probs=150.6

Q ss_pred             CceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc--chHHHHHHHHHHHHhhhCC
Q 024842           26 NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ--NNEQLEMVREEIRVSSLFS  103 (262)
Q Consensus        26 ~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~--~~~~~~~~~~E~~~l~~l~  103 (262)
                      ++|++.+.||+|+||.||+|++..+++                      .+++|++...  .....+.+.+|+.+++.++
T Consensus         1 ~~y~~~~~lg~g~~~~v~~~~~~~~~~----------------------~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~   58 (287)
T cd07848           1 NKFEVLGVVGEGAYGVVLKCRHKETKE----------------------IVAIKKFKDSEENEEVKETTLRELKMLRTLK   58 (287)
T ss_pred             CCceEEEEecccCCEEEEEEEECCCCc----------------------EEEEEEEecccccccchhhHHHHHHHHHhCC
Confidence            479999999999999999999987655                      5677765433  2233466788999999999


Q ss_pred             CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCee
Q 024842          104 HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYA  183 (262)
Q Consensus       104 h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~iv  183 (262)
                      ||||+++++.+          ...+..+++|||+.++.+..+..    ....+++..++.++.|++.||.|||+.+  ++
T Consensus        59 h~~iv~~~~~~----------~~~~~~~lv~e~~~~~~l~~~~~----~~~~~~~~~~~~~~~qi~~~L~~lH~~~--i~  122 (287)
T cd07848          59 QENIVELKEAF----------RRRGKLYLVFEYVEKNMLELLEE----MPNGVPPEKVRSYIYQLIKAIHWCHKND--IV  122 (287)
T ss_pred             CccccchhhhE----------ecCCEEEEEEecCCCCHHHHHHh----cCCCCCHHHHHHHHHHHHHHHHHHHHCC--ee
Confidence            99999999887          34678999999999876654432    3456899999999999999999999988  99


Q ss_pred             ecCCCCCcEEEecCCCCCCceEEeeccceeeccccC------ccCcccCCcccchhhhhhhhhhhhhcCcccchheehee
Q 024842          184 HNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF------ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRE  257 (262)
Q Consensus       184 H~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~------~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~  257 (262)
                      ||||||+||+++.++    .+||+|||++.......      ..++..|.+||.+..-.     .....|+||+|+++|+
T Consensus       123 H~dlkp~Nill~~~~----~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-----~~~~~DiwslGvil~e  193 (287)
T cd07848         123 HRDIKPENLLISHND----VLKLCDFGFARNLSEGSNANYTEYVATRWYRSPELLLGAP-----YGKAVDMWSVGCILGE  193 (287)
T ss_pred             cCCCCHHHEEEcCCC----cEEEeeccCcccccccccccccccccccccCCcHHHcCCC-----CCCchhHHhHHHHHHH
Confidence            999999999998776    69999999998754321      24566788887654322     1234788888888888


Q ss_pred             cccCC
Q 024842          258 LMFGR  262 (262)
Q Consensus       258 l~~G~  262 (262)
                      |++|+
T Consensus       194 l~~g~  198 (287)
T cd07848         194 LSDGQ  198 (287)
T ss_pred             HHhCC
Confidence            88885

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes

>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

Probab=99.98  E-value=5.3e-32  Score=221.38  Aligned_cols=191  Identities=23%  Similarity=0.264  Sum_probs=149.5

Q ss_pred             ceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc---hHHHHHHHHHHHHhhhCC
Q 024842           27 RYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN---NEQLEMVREEIRVSSLFS  103 (262)
Q Consensus        27 ~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~---~~~~~~~~~E~~~l~~l~  103 (262)
                      .|+..+.||+|+||.||+|.+..+++                      .+|+|.+....   ......+.+|+.+++.++
T Consensus         1 ~f~~~~~lg~G~~g~V~~~~~~~~~~----------------------~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~   58 (285)
T cd05631           1 TFRHYRVLGKGGFGEVCACQVRATGK----------------------MYACKKLEKKRIKKRKGEAMALNEKRILEKVN   58 (285)
T ss_pred             CceEEEEEecCCCEEEEEEEEecCCc----------------------eEEEEEeeHhhhhhhhhHHHHHHHHHHHHhcC
Confidence            48899999999999999999887655                      57777654332   222345778999999999


Q ss_pred             CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCee
Q 024842          104 HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYA  183 (262)
Q Consensus       104 h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~iv  183 (262)
                      |+++++++..+          ......+++|||+.+++|.+.+...  ....+++..++.++.|++.||+|||+.+  ++
T Consensus        59 ~~~iv~~~~~~----------~~~~~~~lv~e~~~~g~L~~~~~~~--~~~~~~~~~~~~~~~qi~~~l~~lH~~~--ii  124 (285)
T cd05631          59 SRFVVSLAYAY----------ETKDALCLVLTIMNGGDLKFHIYNM--GNPGFDEQRAIFYAAELCCGLEDLQRER--IV  124 (285)
T ss_pred             CCcEEEEEEEE----------ccCCeEEEEEEecCCCcHHHHHHhh--CCCCCCHHHHHHHHHHHHHHHHHHHhCC--EE
Confidence            99999999887          3356799999999999998776532  2335899999999999999999999998  99


Q ss_pred             ecCCCCCcEEEecCCCCCCceEEeeccceeeccccC----ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecc
Q 024842          184 HNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELM  259 (262)
Q Consensus       184 H~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~  259 (262)
                      ||||||+|||++.++    .++|+|||++.......    ..++..|++||.+....     .....|+||+|+++|+|+
T Consensus       125 H~dikp~Nill~~~~----~~kl~Dfg~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~-----~~~~~DvwslGvil~el~  195 (285)
T cd05631         125 YRDLKPENILLDDRG----HIRISDLGLAVQIPEGETVRGRVGTVGYMAPEVINNEK-----YTFSPDWWGLGCLIYEMI  195 (285)
T ss_pred             eCCCCHHHEEECCCC----CEEEeeCCCcEEcCCCCeecCCCCCCCccCHhhhcCCC-----CCcccCchhHHHHHHHHH
Confidence            999999999998766    69999999998754322    24667777777553221     122468888888888888


Q ss_pred             cCC
Q 024842          260 FGR  262 (262)
Q Consensus       260 ~G~  262 (262)
                      +|+
T Consensus       196 ~g~  198 (285)
T cd05631         196 QGQ  198 (285)
T ss_pred             hCC
Confidence            774

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i

>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]

Probab=99.98  E-value=2.1e-32  Score=232.43  Aligned_cols=185  Identities=26%  Similarity=0.323  Sum_probs=147.1

Q ss_pred             ceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCC-C-
Q 024842           27 RYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFS-H-  104 (262)
Q Consensus        27 ~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~-h-  104 (262)
                      +|.+.+.||+|.||.|.+|.+..+++                      .||||+++....- ..+...|+.+|..++ | 
T Consensus       187 rY~V~e~LGkGtFGQVvk~~d~~T~e----------------------~VAIKIiKN~k~f-~~Q~~~Ei~iL~~ln~~d  243 (586)
T KOG0667|consen  187 RYEVLEVLGKGSFGQVVKAYDHKTGE----------------------IVAIKIIKNKKRF-LRQAQIEIRILELLNKHD  243 (586)
T ss_pred             EEEEEEEecccccceeEEEEecCCCc----------------------EEEEEeeccChHH-HHHHHHHHHHHHHHhccC
Confidence            89999999999999999999999877                      6788877655443 456678999999886 3 


Q ss_pred             ----CCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCC
Q 024842          105 ----RNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEP  180 (262)
Q Consensus       105 ----~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~  180 (262)
                          -|+++++++|.+          ..+.++|+| +...+|+++++....  ..++...++.++.||+.||.+||+.+ 
T Consensus       244 ~~~~~n~Vrm~d~F~f----------r~HlciVfE-LL~~NLYellK~n~f--~Glsl~~ir~~~~Qil~~L~~L~~l~-  309 (586)
T KOG0667|consen  244 PDDKYNIVRMLDYFYF----------RNHLCIVFE-LLSTNLYELLKNNKF--RGLSLPLVRKFAQQILTALLFLHELG-  309 (586)
T ss_pred             CCCCeeEEEeeecccc----------ccceeeeeh-hhhhhHHHHHHhcCC--CCCCHHHHHHHHHHHHHHHHHHHhCC-
Confidence                489999999954          788999999 566799999985433  45999999999999999999999988 


Q ss_pred             CeeecCCCCCcEEEecCCCCCCceEEeeccceeeccc-------------cCccCcccCCcccchhhhhhhhhhhhhcCc
Q 024842          181 PYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQS-------------KFALGQRRYSCRNGLLSIVLHLSELLSCGT  247 (262)
Q Consensus       181 ~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~-------------~~~~~~~~~~~~~d~~s~g~~~~e~~~~~~  247 (262)
                       |||+||||+|||+...+.  ..+||+|||+|.....             ++..-...|..+.||||+||+++|+++ |-
T Consensus       310 -IIHcDLKPENILL~~~~r--~~vKVIDFGSSc~~~q~vytYiQSRfYRAPEVILGlpY~~~IDmWSLGCIlAEL~t-G~  385 (586)
T KOG0667|consen  310 -IIHCDLKPENILLKDPKR--SRIKVIDFGSSCFESQRVYTYIQSRFYRAPEVILGLPYDTAIDMWSLGCILAELFT-GE  385 (586)
T ss_pred             -eeeccCChhheeeccCCc--CceeEEecccccccCCcceeeeeccccccchhhccCCCCCccceeehhhhHHhHhc-Cc
Confidence             999999999999976543  3799999999985543             334444556666677777777777765 34


Q ss_pred             ccchh
Q 024842          248 VRVIQ  252 (262)
Q Consensus       248 v~~~g  252 (262)
                      ..+.|
T Consensus       386 PLfpG  390 (586)
T KOG0667|consen  386 PLFPG  390 (586)
T ss_pred             cccCC
Confidence            44444

>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

Probab=99.98  E-value=3.7e-32  Score=227.39  Aligned_cols=195  Identities=23%  Similarity=0.310  Sum_probs=149.5

Q ss_pred             ceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc--chHHHHHHHHHHHHhhhCCC
Q 024842           27 RYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ--NNEQLEMVREEIRVSSLFSH  104 (262)
Q Consensus        27 ~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~--~~~~~~~~~~E~~~l~~l~h  104 (262)
                      +|++.+.||+|+||.||+|.+..+++                      .|++|++...  .......+.+|+.+++.++|
T Consensus         1 ry~i~~~lg~G~~g~V~~~~~~~~~~----------------------~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h   58 (338)
T cd07859           1 RYKIQEVIGKGSYGVVCSAIDTHTGE----------------------KVAIKKINDVFEHVSDATRILREIKLLRLLRH   58 (338)
T ss_pred             CeEEEEEEeecCCeEEEEEEECCCCC----------------------EEEEEEechhhccchhHHHHHHHHHHHHhCCC
Confidence            59999999999999999999877655                      5777765432  22334567899999999999


Q ss_pred             CCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeee
Q 024842          105 RNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAH  184 (262)
Q Consensus       105 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH  184 (262)
                      |||+++++++...     ........|++|||+. ++|.+++.    ....+++..++.++.|++.||.|||+++  |+|
T Consensus        59 pniv~~~~~~~~~-----~~~~~~~~~lv~e~~~-~~L~~~l~----~~~~~~~~~~~~i~~qi~~aL~~LH~~~--ivH  126 (338)
T cd07859          59 PDIVEIKHIMLPP-----SRREFKDIYVVFELME-SDLHQVIK----ANDDLTPEHHQFFLYQLLRALKYIHTAN--VFH  126 (338)
T ss_pred             CCEeeecceEecc-----CCCCCceEEEEEecCC-CCHHHHHH----hcccCCHHHHHHHHHHHHHHHHHHHHCC--eec
Confidence            9999999876421     1122345899999985 68888775    4456999999999999999999999999  999


Q ss_pred             cCCCCCcEEEecCCCCCCceEEeeccceeecccc--------CccCcccCCcccchhhhhhhhhhhhhcCcccchheehe
Q 024842          185 NDVKPGNILITCRKGQPPLAILMDFGSARPAQSK--------FALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMR  256 (262)
Q Consensus       185 ~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~--------~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~  256 (262)
                      |||||+|||++.++    .+||+|||++......        ...++..|.+||.+....   .......|+||+|+++|
T Consensus       127 ~dlkp~NIll~~~~----~~kL~Dfg~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~---~~~~~~~DvwSlGvvl~  199 (338)
T cd07859         127 RDLKPKNILANADC----KLKICDFGLARVAFNDTPTAIFWTDYVATRWYRAPELCGSFF---SKYTPAIDIWSIGCIFA  199 (338)
T ss_pred             CCCCHHHeEECCCC----cEEEccCccccccccccCccccccCCCCCCCcCCHHHHhccc---cccCchhHHHHHHHHHH
Confidence            99999999998776    6999999999754321        124666777877543211   11223478999999999


Q ss_pred             ecccCC
Q 024842          257 ELMFGR  262 (262)
Q Consensus       257 ~l~~G~  262 (262)
                      +|++|+
T Consensus       200 el~tg~  205 (338)
T cd07859         200 EVLTGK  205 (338)
T ss_pred             HHHcCC
Confidence            988885

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos

>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

Probab=99.98  E-value=5.1e-32  Score=226.01  Aligned_cols=193  Identities=19%  Similarity=0.234  Sum_probs=154.3

Q ss_pred             ecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc-chHHHHHHHHHHHHhhh
Q 024842           23 INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ-NNEQLEMVREEIRVSSL  101 (262)
Q Consensus        23 ~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~-~~~~~~~~~~E~~~l~~  101 (262)
                      +..++|++.+.||+|+||.||++++..++.                      .+++|.+... .....+.+.+|+.+++.
T Consensus         2 l~~~~y~~~~~lg~G~~g~V~~~~~~~~~~----------------------~~a~k~~~~~~~~~~~~~~~~E~~~l~~   59 (331)
T cd06649           2 LKDDDFERISELGAGNGGVVTKVQHKPSGL----------------------IMARKLIHLEIKPAIRNQIIRELQVLHE   59 (331)
T ss_pred             CCcccceEEEeecCCCCEEEEEEEECCCCc----------------------EEEEEEeecccCHHHHHHHHHHHHHHHH
Confidence            346899999999999999999999887655                      5666666544 23345678999999999


Q ss_pred             CCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcC-CC
Q 024842          102 FSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSL-EP  180 (262)
Q Consensus       102 l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~-~~  180 (262)
                      ++||||+++++.+.          ..+..+++|||+.+++|.+++.    ....+++..++.++.|++.||.|||+. + 
T Consensus        60 l~h~~iv~~~~~~~----------~~~~~~lv~e~~~~~~L~~~l~----~~~~~~~~~~~~~~~~i~~~l~~lH~~~~-  124 (331)
T cd06649          60 CNSPYIVGFYGAFY----------SDGEISICMEHMDGGSLDQVLK----EAKRIPEEILGKVSIAVLRGLAYLREKHQ-  124 (331)
T ss_pred             CCCCCCCeEEEEEE----------ECCEEEEEeecCCCCcHHHHHH----HcCCCCHHHHHHHHHHHHHHHHHHhhcCC-
Confidence            99999999999873          3567999999999999999886    344589999999999999999999974 5 


Q ss_pred             CeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC---ccCcccCCcccchhhhhhhhhhhhhcCcccchheehee
Q 024842          181 PYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF---ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRE  257 (262)
Q Consensus       181 ~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~---~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~  257 (262)
                       ++||||||+||+++.++    .++|+|||++.......   ..++..|.+||.+....     .....|+||+|+++|+
T Consensus       125 -ivH~dlkp~Nil~~~~~----~~kl~Dfg~~~~~~~~~~~~~~g~~~y~aPE~~~~~~-----~~~~~DiwslG~il~e  194 (331)
T cd06649         125 -IMHRDVKPSNILVNSRG----EIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTH-----YSVQSDIWSMGLSLVE  194 (331)
T ss_pred             -EEcCCCChhhEEEcCCC----cEEEccCcccccccccccccCCCCcCcCCHhHhcCCC-----CCchHhHHHHHHHHHH
Confidence             99999999999998776    69999999987654322   34667777777553221     1224688888888888


Q ss_pred             cccCC
Q 024842          258 LMFGR  262 (262)
Q Consensus       258 l~~G~  262 (262)
                      |++|+
T Consensus       195 l~tg~  199 (331)
T cd06649         195 LAIGR  199 (331)
T ss_pred             HHhCC
Confidence            88875

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst

>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

Probab=99.98  E-value=2.2e-32  Score=223.99  Aligned_cols=192  Identities=23%  Similarity=0.285  Sum_probs=146.6

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc-hHHHHHHHHHHHHhhhCC
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN-NEQLEMVREEIRVSSLFS  103 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~-~~~~~~~~~E~~~l~~l~  103 (262)
                      .++|++.+.||.|+||.||+|++..+++                      .+|+|.+.... ......+.+|+.+++.++
T Consensus         4 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~----------------------~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~   61 (288)
T cd07871           4 LETYVKLDKLGEGTYATVFKGRSKLTEN----------------------LVALKEIRLEHEEGAPCTAIREVSLLKNLK   61 (288)
T ss_pred             cccceEeeEEecCCCEEEEEEEECCCCC----------------------EEEEEEecccccCCcchhHHHHHHHHHhCC
Confidence            4679999999999999999999887655                      56777654332 222345678999999999


Q ss_pred             CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCee
Q 024842          104 HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYA  183 (262)
Q Consensus       104 h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~iv  183 (262)
                      ||||+++++.+          ......+++||++.+ +|.+++..   ....+++..+..++.|++.||+|||+++  |+
T Consensus        62 h~niv~~~~~~----------~~~~~~~lv~e~~~~-~l~~~l~~---~~~~~~~~~~~~~~~qi~~aL~~LH~~~--iv  125 (288)
T cd07871          62 HANIVTLHDII----------HTERCLTLVFEYLDS-DLKQYLDN---CGNLMSMHNVKIFMFQLLRGLSYCHKRK--IL  125 (288)
T ss_pred             CCCEeeEEEEE----------cCCCeEEEEEeCCCc-CHHHHHHh---cCCCCCHHHHHHHHHHHHHHHHHHHhCC--cc
Confidence            99999999887          335678999999874 88877652   3345789999999999999999999998  99


Q ss_pred             ecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-----ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheec
Q 024842          184 HNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMREL  258 (262)
Q Consensus       184 H~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l  258 (262)
                      ||||||+|||++.++    .+||+|||++.......     ..++..|.+||.+.+-.    ......|+||+|+++|+|
T Consensus       126 H~dlkp~Nil~~~~~----~~kl~DfG~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~----~~~~~~DiwslG~~l~~l  197 (288)
T cd07871         126 HRDLKPQNLLINEKG----ELKLADFGLARAKSVPTKTYSNEVVTLWYRPPDVLLGST----EYSTPIDMWGVGCILYEM  197 (288)
T ss_pred             cCCCCHHHEEECCCC----CEEECcCcceeeccCCCccccCceecccccChHHhcCCc----ccCcHHHHHHHHHHHHHH
Confidence            999999999998776    69999999987643221     23455677777553211    111235788888888888


Q ss_pred             ccCC
Q 024842          259 MFGR  262 (262)
Q Consensus       259 ~~G~  262 (262)
                      ++|+
T Consensus       198 ~~g~  201 (288)
T cd07871         198 ATGR  201 (288)
T ss_pred             HhCC
Confidence            7774

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament

>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

Probab=99.98  E-value=3.7e-32  Score=226.14  Aligned_cols=187  Identities=21%  Similarity=0.316  Sum_probs=148.6

Q ss_pred             EEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc----chHHHHHHHHHHHHhhhCCCCCc
Q 024842           32 RQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ----NNEQLEMVREEIRVSSLFSHRNL  107 (262)
Q Consensus        32 ~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~----~~~~~~~~~~E~~~l~~l~h~~i  107 (262)
                      +.||+|+||.||++++.....                   .+..+|+|.+...    .......+..|+.+++.++||||
T Consensus         2 ~~lg~G~~g~V~~~~~~~~~~-------------------~~~~~avK~~~~~~~~~~~~~~~~~~~E~~il~~l~hp~i   62 (323)
T cd05584           2 KVLGKGGYGKVFQVRKVTGAD-------------------TGKIFAMKVLKKATIVRNQKDTAHTKAERNILEAVKHPFI   62 (323)
T ss_pred             ceeeecCCeEEEEEEEcccCC-------------------CCCEEEEEEEEHHHHHhhhhhHHHHHHHHHHHHhCCCCch
Confidence            679999999999998754321                   2447888876542    22334567789999999999999


Q ss_pred             cchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeeecCC
Q 024842          108 LPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDV  187 (262)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~di  187 (262)
                      +++++.+          ...+..|++|||+.+++|.+++.    ....+++..++.++.|++.||.|||+++  |+||||
T Consensus        63 v~~~~~~----------~~~~~~~lv~e~~~~~~L~~~~~----~~~~~~~~~~~~~~~qi~~~l~~lH~~~--ivH~dl  126 (323)
T cd05584          63 VDLIYAF----------QTGGKLYLILEYLSGGELFMHLE----REGIFMEDTACFYLSEISLALEHLHQQG--IIYRDL  126 (323)
T ss_pred             hceeeEE----------ecCCeEEEEEeCCCCchHHHHHH----HcCCCCHHHHHHHHHHHHHHHHHHHHCC--eecCCC
Confidence            9999887          33567999999999999998876    4556899999999999999999999999  999999


Q ss_pred             CCCcEEEecCCCCCCceEEeeccceeecccc-----CccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecccCC
Q 024842          188 KPGNILITCRKGQPPLAILMDFGSARPAQSK-----FALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMFGR  262 (262)
Q Consensus       188 kp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~-----~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~G~  262 (262)
                      ||+|||++.++    .+||+|||++......     ...++..|.+||.+.....     ....|+||+|+++|+|++|+
T Consensus       127 kp~Nil~~~~~----~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-----~~~~DiwslG~il~ell~G~  197 (323)
T cd05584         127 KPENILLDAQG----HVKLTDFGLCKESIHEGTVTHTFCGTIEYMAPEILMRSGH-----GKAVDWWSLGALMYDMLTGA  197 (323)
T ss_pred             CHHHeEECCCC----CEEEeeCcCCeecccCCCcccccCCCccccChhhccCCCC-----CCcceecccHHHHHHHhcCC
Confidence            99999998776    6999999998754221     1246778888886643321     23579999999999999985

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in

>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]

Probab=99.98  E-value=2.3e-32  Score=233.57  Aligned_cols=190  Identities=23%  Similarity=0.300  Sum_probs=145.5

Q ss_pred             CceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc-chHHHHHHHHHHHHhhhCCC
Q 024842           26 NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ-NNEQLEMVREEIRVSSLFSH  104 (262)
Q Consensus        26 ~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~-~~~~~~~~~~E~~~l~~l~h  104 (262)
                      ..|...+.||+|+||.||+|+++.+|+                      .||+|.+... .....+..-+|++++++++|
T Consensus        13 y~W~~~e~LG~Ga~g~V~rgrnketG~----------------------~vAvK~~~~~~~~r~~e~~~~EieilkKLnh   70 (732)
T KOG4250|consen   13 YLWEMDERLGKGAFGNVYRGRNKETGR----------------------LVAVKTFNKESSLRPRERWCREIEILKKLNH   70 (732)
T ss_pred             cceeehhhhcCCccceeeeeccccccc----------------------chhHHhhhhhcccchHHHHHHHHHHHHHcCc
Confidence            346677889999999999999998877                      5777766543 33445677889999999999


Q ss_pred             CCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeee
Q 024842          105 RNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAH  184 (262)
Q Consensus       105 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH  184 (262)
                      +|||+++++-...    ....-.....++||||.+|+|...+..-.+. ..+++.+++.+...+..||.|||+++  |+|
T Consensus        71 ~NIVk~f~iee~~----~~~~~~~~~vlvmEyC~gGsL~~~L~~PEN~-~GLpE~e~l~lL~d~~~al~~LrEn~--IvH  143 (732)
T KOG4250|consen   71 PNIVKLFDIEETK----FLGLVTRLPVLVMEYCSGGSLRKVLNSPENA-YGLPESEFLDLLSDLVSALRHLRENG--IVH  143 (732)
T ss_pred             hhhhhhcccCCcc----ccCcccccceEEEeecCCCcHHHHhcCcccc-cCCCHHHHHHHHHHHHHHHHHHHHcC--cee
Confidence            9999999864110    0011255678999999999999998744433 45999999999999999999999999  999


Q ss_pred             cCCCCCcEEEecCCCCCCceEEeeccceeeccccCc----cCcccCCcc------------cchhhhhhhhhhhhh
Q 024842          185 NDVKPGNILITCRKGQPPLAILMDFGSARPAQSKFA----LGQRRYSCR------------NGLLSIVLHLSELLS  244 (262)
Q Consensus       185 ~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~~----~~~~~~~~~------------~d~~s~g~~~~e~~~  244 (262)
                      |||||.||++-...+.....||+|||.|+..+....    .|+..|..|            .|+||+|++++++.+
T Consensus       144 RDlKP~NIvl~~Gedgq~IyKLtDfG~Arel~d~s~~~S~vGT~~YLhPel~E~q~~y~~tVDLWS~GvtlY~caT  219 (732)
T KOG4250|consen  144 RDLKPGNIVLQIGEDGQSIYKLTDFGAARELDDNSLFTSLVGTEEYLHPELYERQKKYTATVDLWSFGVTLYECAT  219 (732)
T ss_pred             ccCCCCcEEEeecCCCceEEeeecccccccCCCCCeeeeecCchhhcChHHHhhccCcCceeehhhhhhHHHHHhc
Confidence            999999999976655555789999999998876542    455555444            455555555555544

>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

Probab=99.98  E-value=4.1e-32  Score=225.85  Aligned_cols=184  Identities=23%  Similarity=0.251  Sum_probs=146.0

Q ss_pred             EEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc---chHHHHHHHHHHHHhhhCCCCCcc
Q 024842           32 RQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ---NNEQLEMVREEIRVSSLFSHRNLL  108 (262)
Q Consensus        32 ~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~---~~~~~~~~~~E~~~l~~l~h~~i~  108 (262)
                      +.||+|+||.||++++..+++                      .||+|.+...   .......+.+|+.+++.++||||+
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~----------------------~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~i~   58 (323)
T cd05595           1 KLLGKGTFGKVILVREKATGR----------------------YYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLT   58 (323)
T ss_pred             CeeeeCCCEEEEEEEECCCCC----------------------EEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCc
Confidence            368999999999999876655                      5677766433   233445677899999999999999


Q ss_pred             chhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeeecCCC
Q 024842          109 PLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVK  188 (262)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~dik  188 (262)
                      ++++.+          ...+..+++|||+.+++|..++.    ....+++..++.++.|++.||.|||+.+  ++|||||
T Consensus        59 ~~~~~~----------~~~~~~~lv~E~~~~~~L~~~l~----~~~~~~~~~~~~~~~qi~~aL~~LH~~~--ivH~Dlk  122 (323)
T cd05595          59 ALKYAF----------QTHDRLCFVMEYANGGELFFHLS----RERVFTEERARFYGAEIVSALEYLHSRD--VVYRDIK  122 (323)
T ss_pred             ceeeEE----------ecCCEEEEEEeCCCCCcHHHHHH----HcCCCCHHHHHHHHHHHHHHHHHHHHCC--eEecCCC
Confidence            999887          33668999999999999988775    4456899999999999999999999998  9999999


Q ss_pred             CCcEEEecCCCCCCceEEeeccceeecccc-----CccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecccCC
Q 024842          189 PGNILITCRKGQPPLAILMDFGSARPAQSK-----FALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMFGR  262 (262)
Q Consensus       189 p~Nill~~~~~~~~~~kl~Dfg~a~~~~~~-----~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~G~  262 (262)
                      |+|||++.++    .+||+|||++......     ...++..|.+||.+..-.     .....|+||+|+++|+|++|+
T Consensus       123 p~NIll~~~~----~~kL~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-----~~~~~DiwSlGvil~ell~g~  192 (323)
T cd05595         123 LENLMLDKDG----HIKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLEDND-----YGRAVDWWGLGVVMYEMMCGR  192 (323)
T ss_pred             HHHEEEcCCC----CEEecccHHhccccCCCCccccccCCcCcCCcccccCCC-----CCchhchhhhHHHHHHHHhCC
Confidence            9999998776    6999999998753221     124677788888653221     123468888888888888875

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in

>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

Probab=99.98  E-value=5.1e-32  Score=225.70  Aligned_cols=184  Identities=23%  Similarity=0.245  Sum_probs=147.1

Q ss_pred             EEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc---chHHHHHHHHHHHHhhhCCCCCcc
Q 024842           32 RQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ---NNEQLEMVREEIRVSSLFSHRNLL  108 (262)
Q Consensus        32 ~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~---~~~~~~~~~~E~~~l~~l~h~~i~  108 (262)
                      +.||+|+||.||++++..+++                      .+|+|.+...   .......+.+|+.+++.++||||+
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~----------------------~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv   58 (328)
T cd05593           1 KLLGKGTFGKVILVREKASGK----------------------YYAMKILKKEVIIAKDEVAHTLTESRVLKNTRHPFLT   58 (328)
T ss_pred             CeeeeCCCEEEEEEEECCCCC----------------------EEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCc
Confidence            368999999999999887655                      5666665432   233456778899999999999999


Q ss_pred             chhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeeecCCC
Q 024842          109 PLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVK  188 (262)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~dik  188 (262)
                      ++...+          ...+..+++|||+.+++|.+.+.    ....+++..++.++.||+.||+|||+++  |+|||||
T Consensus        59 ~~~~~~----------~~~~~~~lv~Ey~~~g~L~~~l~----~~~~l~~~~~~~~~~qi~~aL~~LH~~~--ivHrDik  122 (328)
T cd05593          59 SLKYSF----------QTKDRLCFVMEYVNGGELFFHLS----RERVFSEDRTRFYGAEIVSALDYLHSGK--IVYRDLK  122 (328)
T ss_pred             ceEEEE----------EcCCEEEEEEeCCCCCCHHHHHH----hcCCCCHHHHHHHHHHHHHHHHHHHhCC--eEecccC
Confidence            998877          34678999999999999988775    4456999999999999999999999998  9999999


Q ss_pred             CCcEEEecCCCCCCceEEeeccceeecccc-----CccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecccCC
Q 024842          189 PGNILITCRKGQPPLAILMDFGSARPAQSK-----FALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMFGR  262 (262)
Q Consensus       189 p~Nill~~~~~~~~~~kl~Dfg~a~~~~~~-----~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~G~  262 (262)
                      |+|||++.++    .+||+|||++......     ...++..|.+||.+..-.     .....|+||+|+++|+|++|+
T Consensus       123 p~NIll~~~~----~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-----~~~~~DiwslGvil~elltG~  192 (328)
T cd05593         123 LENLMLDKDG----HIKITDFGLCKEGITDAATMKTFCGTPEYLAPEVLEDND-----YGRAVDWWGLGVVMYEMMCGR  192 (328)
T ss_pred             HHHeEECCCC----cEEEecCcCCccCCCcccccccccCCcCccChhhhcCCC-----CCccCCccccchHHHHHhhCC
Confidence            9999998766    6999999998753221     124677788887653321     123578999999999998885

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate

>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=99.98  E-value=3.7e-32  Score=227.32  Aligned_cols=194  Identities=28%  Similarity=0.392  Sum_probs=160.7

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc---chHHHHHHHHHHHHhhh
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ---NNEQLEMVREEIRVSSL  101 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~---~~~~~~~~~~E~~~l~~  101 (262)
                      ...|++.+.||+|.||.||+|+...+++                      .+|+|.+...   .....+...+|+.+++.
T Consensus        34 ~~~Y~l~~~lG~G~Fg~v~~~~~~~tg~----------------------~~A~K~i~k~~~~~~~~~~~v~~Ev~il~~   91 (382)
T KOG0032|consen   34 KEKYELGRELGRGQFGVVYLCREKSTGK----------------------EVACKVIPKRKLRGKEDREDVRREVAILQQ   91 (382)
T ss_pred             cccEEehhhhCCCCceEEEEEEecCCCc----------------------eeEEEEeehhhccccccHHHHHHHHHHHHh
Confidence            5689999999999999999999998866                      5666655443   22345788999999999


Q ss_pred             CC-CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCC
Q 024842          102 FS-HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEP  180 (262)
Q Consensus       102 l~-h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~  180 (262)
                      ++ ||||+.+.+.|          +.....+++||++.+|.|.+.+...     .+++..+..+++|++.++.|||+.| 
T Consensus        92 l~~hpniv~l~~~~----------e~~~~~~lvmEL~~GGeLfd~i~~~-----~~sE~da~~~~~~il~av~~lH~~g-  155 (382)
T KOG0032|consen   92 LSGHPNIVQLKDAF----------EDPDSVYLVMELCEGGELFDRIVKK-----HYSERDAAGIIRQILEAVKYLHSLG-  155 (382)
T ss_pred             ccCCCCEEEEEEEE----------EcCCeEEEEEEecCCchHHHHHHHc-----cCCHHHHHHHHHHHHHHHHHHHhCC-
Confidence            98 99999999998          5567899999999999999988743     2999999999999999999999999 


Q ss_pred             CeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC----ccCcccCCcccchhhhhhhhhhhhhcCcccchheehe
Q 024842          181 PYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMR  256 (262)
Q Consensus       181 ~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~  256 (262)
                       ++||||||+|+|+.........+|++|||++.......    ..|++.|.+||-+...++.     ...|+||.|+++|
T Consensus       156 -vvHrDlKpEN~L~~~~~~~~~~ik~~DFGla~~~~~~~~~~~~~Gtp~y~APEvl~~~~y~-----~~~DiWS~Gvi~y  229 (382)
T KOG0032|consen  156 -VVHRDLKPENLLLASKDEGSGRIKLIDFGLAKFIKPGERLHTIVGTPEYVAPEVLGGRPYG-----DEVDVWSIGVILY  229 (382)
T ss_pred             -ceeccCCHHHeeeccccCCCCcEEEeeCCCceEccCCceEeeecCCccccCchhhcCCCCC-----cccchhHHHHHHH
Confidence             99999999999998665434479999999999887632    3688888888877554333     2358888888888


Q ss_pred             ecccCC
Q 024842          257 ELMFGR  262 (262)
Q Consensus       257 ~l~~G~  262 (262)
                      .|++|.
T Consensus       230 iLL~G~  235 (382)
T KOG0032|consen  230 ILLSGV  235 (382)
T ss_pred             HHhhCC
Confidence            888773

>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

Probab=99.98  E-value=1.4e-31  Score=224.01  Aligned_cols=162  Identities=20%  Similarity=0.274  Sum_probs=129.1

Q ss_pred             eecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc-hHHHHHHHHHHHHhh
Q 024842           22 WINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN-NEQLEMVREEIRVSS  100 (262)
Q Consensus        22 ~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~-~~~~~~~~~E~~~l~  100 (262)
                      .+..++|++.+.||+|+||.||+|.+....+.                 ..+..||+|++.... ....+.+.+|+.+++
T Consensus         3 ~~~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~-----------------~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~   65 (338)
T cd05102           3 EFPRDRLRLGKVLGHGAFGKVVEASAFGIDKK-----------------SSCNTVAVKMLKEGATASEHKALMSELKILI   65 (338)
T ss_pred             ccchhHceeeeEeccCCcceEEEEEEeccCCc-----------------ccchhhheeccccccchHHHHHHHHHHHHHH
Confidence            35678999999999999999999986432211                 123468888876442 333467889999999


Q ss_pred             hC-CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhc---------------------------
Q 024842          101 LF-SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTK---------------------------  152 (262)
Q Consensus       101 ~l-~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~---------------------------  152 (262)
                      .+ +||||+++++.+.         ......+++|||+.+|+|.+++......                           
T Consensus        66 ~l~~h~niv~~~~~~~---------~~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (338)
T cd05102          66 HIGNHLNVVNLLGACT---------KPNGPLMVIVEFCKYGNLSNFLRAKREFFSPYREKSPKQRGRFRAMVEQSRVDRR  136 (338)
T ss_pred             HhccCcceeeEEeEec---------CCCCceEEEEecCCCCcHHHHHHhcchhcccccccchhhhhhhhhhhhhhccccc
Confidence            99 8999999998763         2244689999999999999988642210                           


Q ss_pred             -------------------------------CCCCCHHHHHHHHHHHHHHHHHHHcCCCCeeecCCCCCcEEEecCCCCC
Q 024842          153 -------------------------------KEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQP  201 (262)
Q Consensus       153 -------------------------------~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~dikp~Nill~~~~~~~  201 (262)
                                                     ..++++..+..++.|++.||+|||+++  |+||||||+|||++.++   
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~--ivHrDiKp~Nil~~~~~---  211 (338)
T cd05102         137 IEAGQASVLFSRFQPSTSGSTNPPQETDDLWKSPLTMEDLICYSFQVARGMEFLASRK--CIHRDLAARNILLSENN---  211 (338)
T ss_pred             cccccCCccccccccccCcccccchhccccccCCCCHHHHHHHHHHHHHHHHHHHHCC--EECCCCccceEEEcCCC---
Confidence                                           134788899999999999999999988  99999999999998766   


Q ss_pred             CceEEeeccceeec
Q 024842          202 PLAILMDFGSARPA  215 (262)
Q Consensus       202 ~~~kl~Dfg~a~~~  215 (262)
                       .+||+|||++...
T Consensus       212 -~~kl~DfG~a~~~  224 (338)
T cd05102         212 -VVKICDFGLARDI  224 (338)
T ss_pred             -cEEEeeccccccc
Confidence             6999999999764

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V

>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

Probab=99.98  E-value=5.1e-32  Score=224.85  Aligned_cols=187  Identities=24%  Similarity=0.311  Sum_probs=148.9

Q ss_pred             EEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc--hHHHHHHHHHHHHhhhCCCCCccc
Q 024842           32 RQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN--NEQLEMVREEIRVSSLFSHRNLLP  109 (262)
Q Consensus        32 ~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~--~~~~~~~~~E~~~l~~l~h~~i~~  109 (262)
                      +.||+|+||.||++++.....                   .+..+++|++....  ......+..|+.+++.++||||++
T Consensus         2 ~~lg~G~~g~Vy~~~~~~~~~-------------------~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~   62 (318)
T cd05582           2 KVLGQGSFGKVFLVRKITGPD-------------------AGQLYAMKVLKKATLKVRDRVRTKMERDILAEVNHPFIVK   62 (318)
T ss_pred             ceeeeCCCEEEEEEEEeccCC-------------------CCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhCCCCCccc
Confidence            579999999999998753221                   24478888765432  223345678999999999999999


Q ss_pred             hhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeeecCCCC
Q 024842          110 LLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKP  189 (262)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~dikp  189 (262)
                      +++.+          ...+..|++|||+.+++|.+++.    ....+++..++.++.|++.||.|||+.+  ++||||||
T Consensus        63 ~~~~~----------~~~~~~~lv~e~~~~~~L~~~l~----~~~~l~~~~~~~~~~qi~~~l~~lH~~~--i~H~dlkp  126 (318)
T cd05582          63 LHYAF----------QTEGKLYLILDFLRGGDLFTRLS----KEVMFTEEDVKFYLAELALALDHLHSLG--IIYRDLKP  126 (318)
T ss_pred             EEEEE----------EcCCEEEEEEcCCCCCcHHHHHH----HcCCCCHHHHHHHHHHHHHHHHHHHHCC--EecCCCCH
Confidence            99887          34678999999999999998875    4456899999999999999999999998  99999999


Q ss_pred             CcEEEecCCCCCCceEEeeccceeecccc-----CccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecccCC
Q 024842          190 GNILITCRKGQPPLAILMDFGSARPAQSK-----FALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMFGR  262 (262)
Q Consensus       190 ~Nill~~~~~~~~~~kl~Dfg~a~~~~~~-----~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~G~  262 (262)
                      +||+++.++    .++|+|||++......     ...++..|.+||.+..-+     .....|+|++|+++|+|++|+
T Consensus       127 ~Nil~~~~~----~~kL~Dfg~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~-----~~~~~DiwslG~il~el~tg~  195 (318)
T cd05582         127 ENILLDEEG----HIKLTDFGLSKESIDHEKKAYSFCGTVEYMAPEVVNRRG-----HTQSADWWSFGVLMFEMLTGS  195 (318)
T ss_pred             HHeEECCCC----cEEEeeccCCcccCCCCCceecccCChhhcCHHHHcCCC-----CCCccceeccceEeeeeccCC
Confidence            999998776    6999999998765433     124667788887654322     123589999999999999985

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate

>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

Probab=99.98  E-value=4e-32  Score=224.88  Aligned_cols=182  Identities=21%  Similarity=0.294  Sum_probs=146.6

Q ss_pred             eecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc---chHHHHHHHHHHHHhhhCCCCCccch
Q 024842           34 LGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ---NNEQLEMVREEIRVSSLFSHRNLLPL  110 (262)
Q Consensus        34 ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~---~~~~~~~~~~E~~~l~~l~h~~i~~~  110 (262)
                      ||+|+||.||+|++..+++                      .+|+|.+...   .......+..|+.+++.++||||+++
T Consensus         1 lg~G~~g~Vy~~~~~~~~~----------------------~~aiK~i~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~   58 (312)
T cd05585           1 IGKGSFGKVMQVRKRDTQR----------------------IYALKTIRKAHIVSRSEVTHTLAERTVLAQVNCPFIVPL   58 (312)
T ss_pred             CCcCCCeEEEEEEECCCCC----------------------EEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCcEece
Confidence            6999999999999887655                      5677765432   23345667889999999999999999


Q ss_pred             hhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeeecCCCCC
Q 024842          111 LDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPG  190 (262)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~dikp~  190 (262)
                      +..+          ......+++|||+.+++|.+++.    ....+++..+..++.|++.||.|||+.+  |+||||||+
T Consensus        59 ~~~~----------~~~~~~~lv~e~~~~g~L~~~l~----~~~~~~~~~~~~~~~qi~~~l~~lH~~~--i~HrDlkp~  122 (312)
T cd05585          59 KFSF----------QSPEKLYLVLAFINGGELFHHLQ----REGRFDLSRARFYTAELLCALENLHKFN--VIYRDLKPE  122 (312)
T ss_pred             eeEE----------ecCCeEEEEEcCCCCCcHHHHHH----hcCCCCHHHHHHHHHHHHHHHHHHHhCC--eEeCCCCHH
Confidence            8877          34677999999999999998886    4456899999999999999999999998  999999999


Q ss_pred             cEEEecCCCCCCceEEeeccceeecccc-----CccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecccCC
Q 024842          191 NILITCRKGQPPLAILMDFGSARPAQSK-----FALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMFGR  262 (262)
Q Consensus       191 Nill~~~~~~~~~~kl~Dfg~a~~~~~~-----~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~G~  262 (262)
                      ||+++.++    .++|+|||++......     ...++..|.+||.+....     .....|+|++|+++|+|++|+
T Consensus       123 Nili~~~~----~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-----~~~~~DvwslGvil~el~tg~  190 (312)
T cd05585         123 NILLDYQG----HIALCDFGLCKLNMKDDDKTNTFCGTPEYLAPELLLGHG-----YTKAVDWWTLGVLLYEMLTGL  190 (312)
T ss_pred             HeEECCCC----cEEEEECcccccCccCCCccccccCCcccCCHHHHcCCC-----CCCccceechhHHHHHHHhCC
Confidence            99998776    6999999998754221     124677888888664322     223479999999999999885

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl

>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

Probab=99.98  E-value=3.6e-32  Score=224.25  Aligned_cols=192  Identities=25%  Similarity=0.295  Sum_probs=146.3

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccch-HHHHHHHHHHHHhhhCC
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNN-EQLEMVREEIRVSSLFS  103 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~-~~~~~~~~E~~~l~~l~  103 (262)
                      .++|++.+.||+|+||.||+|++..+++                      .+|+|.+..... .....+.+|+.+++.++
T Consensus         4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~----------------------~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~   61 (303)
T cd07869           4 ADSYEKLEKLGEGSYATVYKGKSKVNGK----------------------LVALKVIRLQEEEGTPFTAIREASLLKGLK   61 (303)
T ss_pred             cccceEeeeEEecCCEEEEEEEECCCCC----------------------EEEEEEeccccccccchhHHHHHHHHhhCC
Confidence            4689999999999999999999876654                      577776654322 22345678999999999


Q ss_pred             CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCee
Q 024842          104 HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYA  183 (262)
Q Consensus       104 h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~iv  183 (262)
                      ||||+++++++          ......+++|||+. ++|.+++..   ....+++..++.++.|++.||.|||+.+  |+
T Consensus        62 h~niv~~~~~~----------~~~~~~~lv~e~~~-~~l~~~~~~---~~~~~~~~~~~~~~~qi~~al~~lH~~~--iv  125 (303)
T cd07869          62 HANIVLLHDII----------HTKETLTLVFEYVH-TDLCQYMDK---HPGGLHPENVKLFLFQLLRGLSYIHQRY--IL  125 (303)
T ss_pred             CCCcCeEEEEE----------ecCCeEEEEEECCC-cCHHHHHHh---CCCCCCHHHHHHHHHHHHHHHHHHHHCC--ee
Confidence            99999999887          33567899999985 577766542   3455899999999999999999999998  99


Q ss_pred             ecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-----ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheec
Q 024842          184 HNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMREL  258 (262)
Q Consensus       184 H~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l  258 (262)
                      ||||||+||+++.++    .+||+|||++.......     ..++..|.+||.+..-.    ......|+||+|+++|+|
T Consensus       126 H~dlkp~Nill~~~~----~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~----~~~~~~DiwslG~il~~l  197 (303)
T cd07869         126 HRDLKPQNLLISDTG----ELKLADFGLARAKSVPSHTYSNEVVTLWYRPPDVLLGST----EYSTCLDMWGVGCIFVEM  197 (303)
T ss_pred             cCCCCHHHEEECCCC----CEEECCCCcceeccCCCccCCCCcccCCCCChHHHcCCC----CCCcHHHHHHHHHHHHHH
Confidence            999999999998766    69999999987543221     23455677776542211    112235788888888888


Q ss_pred             ccCC
Q 024842          259 MFGR  262 (262)
Q Consensus       259 ~~G~  262 (262)
                      ++|+
T Consensus       198 ~~g~  201 (303)
T cd07869         198 IQGV  201 (303)
T ss_pred             HhCC
Confidence            8774

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an

>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]

Probab=99.98  E-value=2.5e-32  Score=220.34  Aligned_cols=158  Identities=25%  Similarity=0.291  Sum_probs=134.5

Q ss_pred             CCceeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc---chHHHHHHHH
Q 024842           18 GGDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ---NNEQLEMVRE   94 (262)
Q Consensus        18 ~~~~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~---~~~~~~~~~~   94 (262)
                      .....+.-+.|++++.||+|.-|.||+++...++.                      .+|+|++...   ......+...
T Consensus        69 ~~~~~l~l~~f~llk~LG~GdiG~VyL~~l~~t~~----------------------~fAmKVmdK~~l~~rkKl~Ra~t  126 (459)
T KOG0610|consen   69 SKDGSLGLRHFRLLKRLGCGDIGTVYLVELRGTNC----------------------LFAMKVMDKESLASRKKLKRAQT  126 (459)
T ss_pred             cCCCccCHHHHHHHHHcCCCCceeEEEEEecCCCc----------------------eEEEEEecHHHHhhhhHHHHHHH
Confidence            34555667899999999999999999999988765                      5666665543   2333466778


Q ss_pred             HHHHhhhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHH
Q 024842           95 EIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKH  174 (262)
Q Consensus        95 E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~  174 (262)
                      |-++|+.++||.++.++..|          +.....+++||||.||+|..+.+  .+....+++..++.++..++.||+|
T Consensus       127 E~eIL~~lDHPFlPTLYa~f----------et~~~~cl~meyCpGGdL~~Lrq--kQp~~~fse~~aRFYaAEvl~ALEY  194 (459)
T KOG0610|consen  127 EREILSLLDHPFLPTLYASF----------ETDKYSCLVMEYCPGGDLHSLRQ--KQPGKRFSESAARFYAAEVLLALEY  194 (459)
T ss_pred             HHHHHHhcCCCccchhhhee----------eccceeEEEEecCCCccHHHHHh--hCCCCccchhhHHHHHHHHHHHHHH
Confidence            99999999999999999998          55788999999999999988765  3345779999999999999999999


Q ss_pred             HHcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeec
Q 024842          175 MHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPA  215 (262)
Q Consensus       175 lH~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~  215 (262)
                      ||-.|  ||+|||||+||||.++|    .+-|+||.++...
T Consensus       195 LHmlG--ivYRDLKPENILvredG----HIMLsDFDLS~~~  229 (459)
T KOG0610|consen  195 LHMLG--IVYRDLKPENILVREDG----HIMLSDFDLSLRC  229 (459)
T ss_pred             HHhhc--eeeccCCcceeEEecCC----cEEeeeccccccC
Confidence            99999  99999999999999988    7999999988743

>KOG0589 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.98  E-value=1.4e-32  Score=227.72  Aligned_cols=182  Identities=24%  Similarity=0.351  Sum_probs=151.6

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc--hHHHHHHHHHHHHhhhC
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN--NEQLEMVREEIRVSSLF  102 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~--~~~~~~~~~E~~~l~~l  102 (262)
                      .++|..++++|+|+||.++++++....+                      .+++|++....  ....+....|+.+++++
T Consensus         3 m~~Ye~~~~iG~GafG~a~lvrhk~~~~----------------------~~vlK~I~l~~~t~~~r~~A~~E~~lis~~   60 (426)
T KOG0589|consen    3 MDNYEVLRQVGRGAFGSALLVRHKSDDK----------------------LYVLKKINLEKLTEPERRSAIQEMDLLSKL   60 (426)
T ss_pred             cchhhhhhhcCccccchhhhhhhccCCc----------------------eEEEEEEeccccCchhhHHHHHHHHHHHhc
Confidence            4689999999999999999999886544                      68888776553  23334678899999999


Q ss_pred             CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCe
Q 024842          103 SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPY  182 (262)
Q Consensus       103 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~i  182 (262)
                      +||||+.+.+.|+         ......+++|+|+.||++.+.+...+  +..++++.++.++.|++.|+.|||++.  |
T Consensus        61 ~hP~iv~y~ds~~---------~~~~~l~Ivm~Y~eGg~l~~~i~~~k--~~~f~E~~i~~~~~Q~~~av~ylH~~~--i  127 (426)
T KOG0589|consen   61 LHPNIVEYKDSFE---------EDGQLLCIVMEYCEGGDLAQLIKEQK--GVLFPEERILKWFVQILLAVNYLHENR--V  127 (426)
T ss_pred             cCCCeeeeccchh---------cCCceEEEEEeecCCCCHHHHHHHHh--hccccHHHHHHHHHHHHHHHHHHHhhh--h
Confidence            9999999999996         33444999999999999999887443  466999999999999999999999988  9


Q ss_pred             eecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-----ccCcccCCccc-----------chhhhhhhhhhhhhc
Q 024842          183 AHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-----ALGQRRYSCRN-----------GLLSIVLHLSELLSC  245 (262)
Q Consensus       183 vH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~~~~~~~~-----------d~~s~g~~~~e~~~~  245 (262)
                      +|||||+.||+++.++    .++|+|||+|+.+.++.     ..|++.|.+||           |+|++||+++|++..
T Consensus       128 LHRDlK~~Nifltk~~----~VkLgDfGlaK~l~~~~~~a~tvvGTp~YmcPEil~d~pYn~KSDiWsLGC~~yEm~~l  202 (426)
T KOG0589|consen  128 LHRDLKCANIFLTKDK----KVKLGDFGLAKILNPEDSLASTVVGTPYYMCPEILSDIPYNEKSDIWSLGCCLYEMCTL  202 (426)
T ss_pred             hcccchhhhhhccccC----ceeecchhhhhhcCCchhhhheecCCCcccCHHHhCCCCCCccCcchhhcchHHHHHhc
Confidence            9999999999999887    68999999999988776     57888888876           556666666665543

>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]

Probab=99.98  E-value=8.7e-33  Score=232.32  Aligned_cols=196  Identities=20%  Similarity=0.245  Sum_probs=158.1

Q ss_pred             CceeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc--chHHHHHHHHHH
Q 024842           19 GDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ--NNEQLEMVREEI   96 (262)
Q Consensus        19 ~~~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~--~~~~~~~~~~E~   96 (262)
                      .+..|..++..+.+.||+|+||+||+|+|..                         .||||.+...  ..+..+.|++|+
T Consensus       385 ~~WeIp~~ev~l~~rIGsGsFGtV~Rg~whG-------------------------dVAVK~Lnv~~pt~~qlqaFKnEV  439 (678)
T KOG0193|consen  385 EEWEIPPEEVLLGERIGSGSFGTVYRGRWHG-------------------------DVAVKLLNVDDPTPEQLQAFKNEV  439 (678)
T ss_pred             cccccCHHHhhccceeccccccceeeccccc-------------------------ceEEEEEecCCCCHHHHHHHHHHH
Confidence            4555777888999999999999999999974                         6899987654  556789999999


Q ss_pred             HHhhhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHH
Q 024842           97 RVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMH  176 (262)
Q Consensus        97 ~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH  176 (262)
                      .++++-+|.||+-+.+++.           .....+++.+|.+-+|+.++...+   ..|.......|++|++.|+.|||
T Consensus       440 a~lkkTRH~NIlLFMG~~~-----------~p~~AIiTqwCeGsSLY~hlHv~e---tkfdm~~~idIAqQiaqGM~YLH  505 (678)
T KOG0193|consen  440 AVLKKTRHENILLFMGACM-----------NPPLAIITQWCEGSSLYTHLHVQE---TKFDMNTTIDIAQQIAQGMDYLH  505 (678)
T ss_pred             HHHhhcchhhheeeehhhc-----------CCceeeeehhccCchhhhhccchh---hhhhHHHHHHHHHHHHHhhhhhh
Confidence            9999999999999999985           344588999999999999987544   44899999999999999999999


Q ss_pred             cCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeecc---cc----CccCcccCCcccchhhhhhhhhhhhhcCccc
Q 024842          177 SLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQ---SK----FALGQRRYSCRNGLLSIVLHLSELLSCGTVR  249 (262)
Q Consensus       177 ~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~---~~----~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~  249 (262)
                      .++  |||+|||..||++..++    .|||+|||++.--.   ..    ...+...|++||-+.--...  .+....|||
T Consensus       506 AK~--IIHrDLKSnNIFl~~~~----kVkIgDFGLatvk~~w~g~~q~~qp~gsilwmAPEvIRmqd~n--PfS~qSDVY  577 (678)
T KOG0193|consen  506 AKN--IIHRDLKSNNIFLHEDL----KVKIGDFGLATVKTRWSGEQQLEQPHGSLLWMAPEVIRMQDDN--PFSFQSDVY  577 (678)
T ss_pred             hhh--hhhhhccccceEEccCC----cEEEecccceeeeeeeccccccCCCccchhhhcHHHHhhcccC--CCCcccchh
Confidence            999  99999999999998776    79999999987432   11    12344567777766422111  112247899


Q ss_pred             chheeheecccC
Q 024842          250 VIQILMRELMFG  261 (262)
Q Consensus       250 ~~g~~~~~l~~G  261 (262)
                      +||+++|||++|
T Consensus       578 aFGiV~YELltg  589 (678)
T KOG0193|consen  578 AFGIVWYELLTG  589 (678)
T ss_pred             hhhHHHHHHHhC
Confidence            999999999887

>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

Probab=99.97  E-value=7.7e-32  Score=222.38  Aligned_cols=211  Identities=18%  Similarity=0.200  Sum_probs=150.9

Q ss_pred             ecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc-hHHHHHHHHHHHHhhh
Q 024842           23 INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN-NEQLEMVREEIRVSSL  101 (262)
Q Consensus        23 ~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~-~~~~~~~~~E~~~l~~  101 (262)
                      +..++|++.+.||+|+||.||+|.+.......+.+..      .......+..+|+|.+.... ......+.+|+.+++.
T Consensus         2 ~~~~~~~~~~~lg~G~fg~V~~~~~~~~~~~~~~~~~------~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~   75 (304)
T cd05096           2 FPRGHLLFKEKLGEGQFGEVHLCEVVNPQDLPTLQFP------FNVRKGRPLLVAVKILRPDANKNARNDFLKEVKILSR   75 (304)
T ss_pred             CchhhCeeeeEecccCCeEEEEEEeccCccccccccc------ccccCCcceEEEEEEecCCCCHHHHHHHHHHHHHHhh
Confidence            4567899999999999999999998655432222111      11111234478999876543 3345678899999999


Q ss_pred             CCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhh---------------cCCCCCHHHHHHHHH
Q 024842          102 FSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQT---------------KKEFFSTSDVLQIFY  166 (262)
Q Consensus       102 l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~---------------~~~~~~~~~~~~i~~  166 (262)
                      ++||||+++++.+.          .....+++|||+.+++|.+++.....               ....+++..++.++.
T Consensus        76 l~h~niv~~~~~~~----------~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  145 (304)
T cd05096          76 LKDPNIIRLLGVCV----------DEDPLCMITEYMENGDLNQFLSSHHLDDKEENGNDAVPPAHCLPAISYSSLLHVAL  145 (304)
T ss_pred             cCCCCeeEEEEEEe----------cCCceEEEEecCCCCcHHHHHHhccccccccccccccccccccccccHHHHHHHHH
Confidence            99999999999873          24568999999999999998864321               112467888999999


Q ss_pred             HHHHHHHHHHcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-------ccCcccCCcccchhhhhhhh
Q 024842          167 QICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-------ALGQRRYSCRNGLLSIVLHL  239 (262)
Q Consensus       167 ql~~~l~~lH~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-------~~~~~~~~~~~d~~s~g~~~  239 (262)
                      |++.||.|||+.+  ++||||||+|||++.++    .+||+|||++.......       ..++..|.+||.+..-    
T Consensus       146 ~i~~al~~lH~~~--ivH~dlkp~Nill~~~~----~~kl~DfG~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~----  215 (304)
T cd05096         146 QIASGMKYLSSLN--FVHRDLATRNCLVGENL----TIKIADFGMSRNLYAGDYYRIQGRAVLPIRWMAWECILMG----  215 (304)
T ss_pred             HHHHHHHHHHHCC--ccccCcchhheEEcCCc----cEEECCCccceecccCceeEecCcCCCCccccCHHHHhcC----
Confidence            9999999999998  99999999999998766    69999999997653321       1223456666533211    


Q ss_pred             hhhhhcCcccchheeheeccc
Q 024842          240 SELLSCGTVRVIQILMRELMF  260 (262)
Q Consensus       240 ~e~~~~~~v~~~g~~~~~l~~  260 (262)
                       ......|+||+|+++|+|++
T Consensus       216 -~~~~~~Dv~slG~~l~el~~  235 (304)
T cd05096         216 -KFTTASDVWAFGVTLWEILM  235 (304)
T ss_pred             -CCCchhhhHHHHHHHHHHHH
Confidence             11223566666666666554

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k

>PHA03212 serine/threonine kinase US3; Provisional

Probab=99.97  E-value=7.3e-32  Score=229.34  Aligned_cols=186  Identities=17%  Similarity=0.170  Sum_probs=143.8

Q ss_pred             ecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhC
Q 024842           23 INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLF  102 (262)
Q Consensus        23 ~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l  102 (262)
                      +...+|++.+.||+|+||.||+|.+..+++                      .+|+|...      .+.+.+|+.+++.+
T Consensus        89 ~~~~~y~~~~~lg~G~~g~V~~~~d~~~~~----------------------~vaiK~~~------~~~~~~E~~il~~l  140 (391)
T PHA03212         89 IEKAGFSILETFTPGAEGFAFACIDNKTCE----------------------HVVIKAGQ------RGGTATEAHILRAI  140 (391)
T ss_pred             cccCCcEEEEEEcCCCCeEEEEEEECCCCC----------------------EEEEechh------hhhhHHHHHHHHhC
Confidence            345689999999999999999999987765                      56666432      23467899999999


Q ss_pred             CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCe
Q 024842          103 SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPY  182 (262)
Q Consensus       103 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~i  182 (262)
                      +||||+++++.+          ......+++|+++. ++|..++.    ....+++..++.++.|++.||.|||+.+  |
T Consensus       141 ~HpnIv~~~~~~----------~~~~~~~lv~e~~~-~~L~~~l~----~~~~l~~~~~~~i~~qi~~aL~ylH~~~--I  203 (391)
T PHA03212        141 NHPSIIQLKGTF----------TYNKFTCLILPRYK-TDLYCYLA----AKRNIAICDILAIERSVLRAIQYLHENR--I  203 (391)
T ss_pred             CCCCCCCEeEEE----------EECCeeEEEEecCC-CCHHHHHH----hcCCCCHHHHHHHHHHHHHHHHHHHhCC--c
Confidence            999999999887          33566889999764 67877765    3445899999999999999999999998  9


Q ss_pred             eecCCCCCcEEEecCCCCCCceEEeeccceeecccc------CccCcccCCcccchhhhhhhhhhhhhcCcccchheehe
Q 024842          183 AHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSK------FALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMR  256 (262)
Q Consensus       183 vH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~------~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~  256 (262)
                      +||||||+|||++.++    .++|+|||+|......      ...++..|.+||.+..-.     .....|+||+|+++|
T Consensus       204 vHrDiKP~NIll~~~~----~vkL~DFG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-----~~~~~DiwSlGvil~  274 (391)
T PHA03212        204 IHRDIKAENIFINHPG----DVCLGDFGAACFPVDINANKYYGWAGTIATNAPELLARDP-----YGPAVDIWSAGIVLF  274 (391)
T ss_pred             ccCCCChHhEEEcCCC----CEEEEeCCcccccccccccccccccCccCCCChhhhcCCC-----CCcHHHHHHHHHHHH
Confidence            9999999999998766    6999999998653221      124667777777543221     112357777777777


Q ss_pred             ecccCC
Q 024842          257 ELMFGR  262 (262)
Q Consensus       257 ~l~~G~  262 (262)
                      ||++|+
T Consensus       275 elltg~  280 (391)
T PHA03212        275 EMATCH  280 (391)
T ss_pred             HHHHCC
Confidence            777763

>PLN00034 mitogen-activated protein kinase kinase; Provisional

Probab=99.97  E-value=3.2e-32  Score=229.17  Aligned_cols=193  Identities=21%  Similarity=0.275  Sum_probs=149.3

Q ss_pred             cCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc-chHHHHHHHHHHHHhhhC
Q 024842           24 NENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ-NNEQLEMVREEIRVSSLF  102 (262)
Q Consensus        24 ~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~-~~~~~~~~~~E~~~l~~l  102 (262)
                      ..++|+..+.||+|+||.||+|++..+++                      .|++|.+... .......+.+|+.+++.+
T Consensus        72 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~----------------------~vaiK~~~~~~~~~~~~~~~~E~~~l~~l  129 (353)
T PLN00034         72 SLSELERVNRIGSGAGGTVYKVIHRPTGR----------------------LYALKVIYGNHEDTVRRQICREIEILRDV  129 (353)
T ss_pred             CHHHHhhhhhccCCCCeEEEEEEECCCCC----------------------EEEEEEEecCCcHHHHHHHHHHHHHHHhC
Confidence            34689999999999999999999876544                      6777776543 233456788999999999


Q ss_pred             CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCe
Q 024842          103 SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPY  182 (262)
Q Consensus       103 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~i  182 (262)
                      +|+||+++++.+          ...+..+++|||+.+++|.+..        ..++..++.++.||+.||.|||+++  +
T Consensus       130 ~h~~iv~~~~~~----------~~~~~~~lv~e~~~~~~L~~~~--------~~~~~~~~~i~~qi~~aL~~LH~~~--i  189 (353)
T PLN00034        130 NHPNVVKCHDMF----------DHNGEIQVLLEFMDGGSLEGTH--------IADEQFLADVARQILSGIAYLHRRH--I  189 (353)
T ss_pred             CCCCcceeeeEe----------ccCCeEEEEEecCCCCcccccc--------cCCHHHHHHHHHHHHHHHHHHHHCC--E
Confidence            999999999987          3466789999999999986532        2567888999999999999999998  9


Q ss_pred             eecCCCCCcEEEecCCCCCCceEEeeccceeecccc-----CccCcccCCcccchhhhhhhhhhhhhcCcccchheehee
Q 024842          183 AHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSK-----FALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRE  257 (262)
Q Consensus       183 vH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~-----~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~  257 (262)
                      +||||||+|||++.++    .+||+|||++......     ...++..|.+||.+..-...-...-...|||++|+++||
T Consensus       190 vHrDlkp~NIll~~~~----~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DvwslGvil~e  265 (353)
T PLN00034        190 VHRDIKPSNLLINSAK----NVKIADFGVSRILAQTMDPCNSSVGTIAYMSPERINTDLNHGAYDGYAGDIWSLGVSILE  265 (353)
T ss_pred             eecCCCHHHEEEcCCC----CEEEcccccceecccccccccccccCccccCccccccccccCcCCCcchhHHHHHHHHHH
Confidence            9999999999998776    6999999999865432     234667788887542210000000114688888888888


Q ss_pred             cccCC
Q 024842          258 LMFGR  262 (262)
Q Consensus       258 l~~G~  262 (262)
                      |++|+
T Consensus       266 l~~g~  270 (353)
T PLN00034        266 FYLGR  270 (353)
T ss_pred             HHhCC
Confidence            88875

>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

Probab=99.97  E-value=1.3e-31  Score=222.93  Aligned_cols=189  Identities=21%  Similarity=0.257  Sum_probs=147.2

Q ss_pred             ceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc---chHHHHHHHHHHHHhhhCC
Q 024842           27 RYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ---NNEQLEMVREEIRVSSLFS  103 (262)
Q Consensus        27 ~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~---~~~~~~~~~~E~~~l~~l~  103 (262)
                      +|++.+.||+|+||.||+|.+..+++                      .+|+|.+...   .....+.+..|..++..+.
T Consensus         1 ~y~~~~~lg~G~~g~Vy~~~~~~~~~----------------------~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~   58 (324)
T cd05587           1 DFNFLMVLGKGSFGKVMLAERKGTDE----------------------LYAIKILKKDVIIQDDDVECTMVEKRVLALPG   58 (324)
T ss_pred             CceEEEEEeeccCeEEEEEEECCCCC----------------------EEEEEEEEHHHhhhhhHHHHHHHHHHHHHhcC
Confidence            58999999999999999999876654                      5777765432   2334466778888999887


Q ss_pred             CC-CccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCe
Q 024842          104 HR-NLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPY  182 (262)
Q Consensus       104 h~-~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~i  182 (262)
                      |+ +|++++..+          ...+..|++|||+.+++|.+++.    ....+++..++.++.|++.||.|||+.+  |
T Consensus        59 ~~~~i~~~~~~~----------~~~~~~~lv~E~~~~g~L~~~~~----~~~~~~~~~~~~~~~qi~~al~~lH~~~--i  122 (324)
T cd05587          59 KPPFLTQLHSCF----------QTMDRLYFVMEYVNGGDLMYHIQ----QVGKFKEPHAVFYAAEIAIGLFFLHSKG--I  122 (324)
T ss_pred             CCCceeeeEEEE----------EcCCEEEEEEcCCCCCcHHHHHH----HcCCCCHHHHHHHHHHHHHHHHHHHHCC--e
Confidence            65 577777776          33567999999999999998876    4455899999999999999999999998  9


Q ss_pred             eecCCCCCcEEEecCCCCCCceEEeeccceeeccc-----cCccCcccCCcccchhhhhhhhhhhhhcCcccchheehee
Q 024842          183 AHNDVKPGNILITCRKGQPPLAILMDFGSARPAQS-----KFALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRE  257 (262)
Q Consensus       183 vH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~-----~~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~  257 (262)
                      +||||||+|||++.++    .++|+|||++.....     ....++..|.+||.+..-.     .....|+||+|+++|+
T Consensus       123 vH~dlkp~Nill~~~~----~~kL~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-----~~~~~DiwslGvil~e  193 (324)
T cd05587         123 IYRDLKLDNVMLDAEG----HIKIADFGMCKENIFGGKTTRTFCGTPDYIAPEIIAYQP-----YGKSVDWWAFGVLLYE  193 (324)
T ss_pred             EecCCCHHHeEEcCCC----CEEEeecCcceecCCCCCceeeecCCccccChhhhcCCC-----CCcccchhhhHHHHHH
Confidence            9999999999998776    699999999875321     1124677788887653221     1234688888888888


Q ss_pred             cccCC
Q 024842          258 LMFGR  262 (262)
Q Consensus       258 l~~G~  262 (262)
                      |++|+
T Consensus       194 lltG~  198 (324)
T cd05587         194 MLAGQ  198 (324)
T ss_pred             HHhCC
Confidence            88875

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=99.97  E-value=1.2e-31  Score=243.24  Aligned_cols=205  Identities=21%  Similarity=0.326  Sum_probs=155.8

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc--chHHHHHHHHHHHHhhhC
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ--NNEQLEMVREEIRVSSLF  102 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~--~~~~~~~~~~E~~~l~~l  102 (262)
                      .++|.+.+.||+|+||.||+|++..+++                      .+++|.+...  .......+..|+.+++.+
T Consensus        12 l~~YeIl~kLG~GgFGtVYLAkdk~tg~----------------------~vAlKvIk~~~l~e~~~~~~~~EI~IL~~L   69 (1021)
T PTZ00266         12 LNEYEVIKKIGNGRFGEVFLVKHKRTQE----------------------FFCWKAISYRGLKEREKSQLVIEVNVMREL   69 (1021)
T ss_pred             cCCEEEEEEEecCCCeEEEEEEECCCCe----------------------EEEEEEEeccccCHHHHHHHHHHHHHHHHc
Confidence            5689999999999999999999887654                      5666655432  233456788999999999


Q ss_pred             CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCC---
Q 024842          103 SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLE---  179 (262)
Q Consensus       103 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~---  179 (262)
                      +||||++++++|..        .....+|++|||+.+++|.+++.........+++..++.++.||+.||.|||+.+   
T Consensus        70 ~HPNIVrl~d~f~d--------e~~~~lyIVMEY~~gGSL~~lL~k~~~~~g~L~E~~Il~Ia~QIL~ALaYLHs~g~~~  141 (1021)
T PTZ00266         70 KHKNIVRYIDRFLN--------KANQKLYILMEFCDAGDLSRNIQKCYKMFGKIEEHAIVDITRQLLHALAYCHNLKDGP  141 (1021)
T ss_pred             CCCCcCeEEEEEEe--------cCCCEEEEEEeCCCCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhccccc
Confidence            99999999998742        3345789999999999999998765444567999999999999999999999843   


Q ss_pred             --CCeeecCCCCCcEEEecCC-------------CCCCceEEeeccceeecccc----CccCcccCCcccchhhhhhhhh
Q 024842          180 --PPYAHNDVKPGNILITCRK-------------GQPPLAILMDFGSARPAQSK----FALGQRRYSCRNGLLSIVLHLS  240 (262)
Q Consensus       180 --~~ivH~dikp~Nill~~~~-------------~~~~~~kl~Dfg~a~~~~~~----~~~~~~~~~~~~d~~s~g~~~~  240 (262)
                        .+|+|+||||+|||++.+.             +..+.+||+|||++......    ...+++.|.+||.+.....   
T Consensus       142 ~~k~IVHRDLKPeNILL~s~~~~lg~i~~~~~n~ng~~iVKLsDFGlAr~l~~~s~~~s~vGTp~YmAPEvL~ge~~---  218 (1021)
T PTZ00266        142 NGERVLHRDLKPQNIFLSTGIRHIGKITAQANNLNGRPIAKIGDFGLSKNIGIESMAHSCVGTPYYWSPELLLHETK---  218 (1021)
T ss_pred             ccCCceeccCcHHHeEeecCccccccccccccccCCCCceEEccCCccccccccccccccCCCccccCHHHHhccCC---
Confidence              2499999999999997532             12335899999999865432    2356777777775532111   


Q ss_pred             hhhhcCcccchheeheecccCC
Q 024842          241 ELLSCGTVRVIQILMRELMFGR  262 (262)
Q Consensus       241 e~~~~~~v~~~g~~~~~l~~G~  262 (262)
                      ......||||+|+++|+|++|+
T Consensus       219 ~~s~KSDVWSLG~ILYELLTGk  240 (1021)
T PTZ00266        219 SYDDKSDMWALGCIIYELCSGK  240 (1021)
T ss_pred             CCCchhHHHHHHHHHHHHHHCC
Confidence            1112367888888888888774

>PTZ00036 glycogen synthase kinase; Provisional

Probab=99.97  E-value=1e-31  Score=231.83  Aligned_cols=200  Identities=22%  Similarity=0.268  Sum_probs=146.5

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCCC
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSH  104 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~h  104 (262)
                      ..+|++.+.||+|+||.||+|.+..+++                      .+|+|++....    ....+|+.+++.++|
T Consensus        65 ~~~y~~~~~LG~G~fg~Vy~~~~~~~~~----------------------~vAiK~i~~~~----~~~~~Ei~il~~l~h  118 (440)
T PTZ00036         65 NKSYKLGNIIGNGSFGVVYEAICIDTSE----------------------KVAIKKVLQDP----QYKNRELLIMKNLNH  118 (440)
T ss_pred             CCeEEEeEEEEeCCCEEEEEEEECCCCC----------------------EEEEEEEecCc----chHHHHHHHHHhcCC
Confidence            4689999999999999999999876654                      57777664332    223468999999999


Q ss_pred             CCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeee
Q 024842          105 RNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAH  184 (262)
Q Consensus       105 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH  184 (262)
                      |||+++.+++....  ..........+++|||+.+ ++.+++.........+++..++.++.|++.||.|||+.+  |+|
T Consensus       119 ~niv~l~~~~~~~~--~~~~~~~~~l~lvmE~~~~-~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~gL~yLH~~~--IiH  193 (440)
T PTZ00036        119 INIIFLKDYYYTEC--FKKNEKNIFLNVVMEFIPQ-TVHKYMKHYARNNHALPLFLVKLYSYQLCRALAYIHSKF--ICH  193 (440)
T ss_pred             CCCcceeeeEeecc--cccCCCceEEEEEEecCCc-cHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHCC--Eec
Confidence            99999987763210  0011223356789998874 777777655445667999999999999999999999998  999


Q ss_pred             cCCCCCcEEEecCCCCCCceEEeeccceeeccccC----ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheeccc
Q 024842          185 NDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMF  260 (262)
Q Consensus       185 ~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~  260 (262)
                      |||||+|||++.++.   .+||+|||+|.......    ..+++.|.+||.+..-.    ......|+||+|+++|||++
T Consensus       194 rDLKp~NILl~~~~~---~vkL~DFGla~~~~~~~~~~~~~~t~~y~aPE~~~~~~----~~~~~~DiwSlGvil~ellt  266 (440)
T PTZ00036        194 RDLKPQNLLIDPNTH---TLKLCDFGSAKNLLAGQRSVSYICSRFYRAPELMLGAT----NYTTHIDLWSLGCIIAEMIL  266 (440)
T ss_pred             CCcCHHHEEEcCCCC---ceeeeccccchhccCCCCcccCCCCcCccCHHHhcCCC----CCCcHHHHHHHHHHHHHHHh
Confidence            999999999975542   59999999998654322    24566677777543211    11223578888888888877


Q ss_pred             CC
Q 024842          261 GR  262 (262)
Q Consensus       261 G~  262 (262)
                      |+
T Consensus       267 G~  268 (440)
T PTZ00036        267 GY  268 (440)
T ss_pred             CC
Confidence            74

>KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=99.97  E-value=1.3e-33  Score=213.77  Aligned_cols=183  Identities=25%  Similarity=0.356  Sum_probs=146.7

Q ss_pred             ecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc--chHHHHHHHHHHHHhh
Q 024842           23 INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ--NNEQLEMVREEIRVSS  100 (262)
Q Consensus        23 ~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~--~~~~~~~~~~E~~~l~  100 (262)
                      ...++|++.+.||+|.|+.|+++.+..+++                      .+++|++...  .....+++.+|+++.+
T Consensus         8 ~f~d~y~l~e~igkG~FSvVrRc~~~~tg~----------------------~fa~kiin~~k~~~~~~e~l~rEarIC~   65 (355)
T KOG0033|consen    8 KFSDNYDVKEELGKGAFSVVRRCVHKTTGL----------------------EFAAKIINTKKLSARDFQKLEREARICR   65 (355)
T ss_pred             ccchhhhHHHHHccCchHHHHHHHhccchH----------------------HHHHHHhhhhhhccccHHHHHHHHHHHH
Confidence            347899999999999999999999888776                      4566655433  2335688999999999


Q ss_pred             hCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCC
Q 024842          101 LFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEP  180 (262)
Q Consensus       101 ~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~  180 (262)
                      .|+||||+++.+.+          +..+..|++++++.|++|..-+-.    +..+++..+...++||+.||.|+|.++ 
T Consensus        66 ~LqHP~IvrL~~ti----------~~~~~~ylvFe~m~G~dl~~eIV~----R~~ySEa~aSH~~rQiLeal~yCH~n~-  130 (355)
T KOG0033|consen   66 KLQHPNIVRLHDSI----------QEESFHYLVFDLVTGGELFEDIVA----REFYSEADASHCIQQILEALAYCHSNG-  130 (355)
T ss_pred             hcCCCcEeehhhhh----------cccceeEEEEecccchHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence            99999999999987          557889999999999999866653    355899999999999999999999999 


Q ss_pred             CeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccCc----cCcccCCcc-----------cchhhhhhhhhhhhh
Q 024842          181 PYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKFA----LGQRRYSCR-----------NGLLSIVLHLSELLS  244 (262)
Q Consensus       181 ~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~~----~~~~~~~~~-----------~d~~s~g~~~~e~~~  244 (262)
                       |+|||+||+|+++-+..+.. .+||+|||+|....+...    .|++.|++|           .|+|+.|++++-++.
T Consensus       131 -IvHRDvkP~nllLASK~~~A-~vKL~~FGvAi~l~~g~~~~G~~GtP~fmaPEvvrkdpy~kpvDiW~cGViLfiLL~  207 (355)
T KOG0033|consen  131 -IVHRDLKPENLLLASKAKGA-AVKLADFGLAIEVNDGEAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLV  207 (355)
T ss_pred             -ceeccCChhheeeeeccCCC-ceeecccceEEEeCCccccccccCCCcccCHHHhhcCCCCCcchhhhhhHHHHHHHh
Confidence             99999999999997654333 599999999998875443    355555544           466666666555544

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=99.97  E-value=1.2e-32  Score=244.98  Aligned_cols=199  Identities=24%  Similarity=0.302  Sum_probs=170.9

Q ss_pred             eeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhc---cchHHHHHHHHHHH
Q 024842           21 VWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLI---QNNEQLEMVREEIR   97 (262)
Q Consensus        21 ~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~---~~~~~~~~~~~E~~   97 (262)
                      +-+..++|.+++.||+|+||.|.+++...+++                      .||+|++..   -......-|..|-.
T Consensus        70 lrl~~~DfeilKvIGrGaFGEV~lVr~k~t~~----------------------VYAMK~lnK~eMlKr~~tA~F~EERD  127 (1317)
T KOG0612|consen   70 LRLKAEDFEILKVIGRGAFGEVALVRHKSTEK----------------------VYAMKILNKWEMLKRAETACFREERD  127 (1317)
T ss_pred             HhCCHHhhHHHHHhcccccceeEEEEeecccc----------------------chhHHHhhHHHHhhchhHHHHHHHhH
Confidence            34567899999999999999999999998866                      688887654   33444567888999


Q ss_pred             HhhhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHc
Q 024842           98 VSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHS  177 (262)
Q Consensus        98 ~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~  177 (262)
                      ++..-+.+=|+.++-.|          ++..++|+||+|++||+|..++.    +-.++|++-+..++..|+.||.-+|+
T Consensus       128 imv~~ns~Wiv~LhyAF----------QD~~~LYlVMdY~pGGDlltLlS----k~~~~pE~~ArFY~aEiVlAldslH~  193 (1317)
T KOG0612|consen  128 IMVFGNSEWIVQLHYAF----------QDERYLYLVMDYMPGGDLLTLLS----KFDRLPEDWARFYTAEIVLALDSLHS  193 (1317)
T ss_pred             HHHcCCcHHHHHHHHHh----------cCccceEEEEecccCchHHHHHh----hcCCChHHHHHHHHHHHHHHHHHHHh
Confidence            99998999999998888          66889999999999999999997    33369999999999999999999999


Q ss_pred             CCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccc------cCccCcccCCcccchhhhhhhhhhhhhcCcccch
Q 024842          178 LEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQS------KFALGQRRYSCRNGLLSIVLHLSELLSCGTVRVI  251 (262)
Q Consensus       178 ~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~------~~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~  251 (262)
                      .|  +|||||||+|||++..|    .+||+|||.|..+..      ....|||.|-+|+-+-+.|--..++-.--|.||+
T Consensus       194 mg--yVHRDiKPDNvLld~~G----HikLADFGsClkm~~dG~V~s~~aVGTPDYISPEvLqs~~~~~g~yG~ecDwWSl  267 (1317)
T KOG0612|consen  194 MG--YVHRDIKPDNVLLDKSG----HIKLADFGSCLKMDADGTVRSSVAVGTPDYISPEVLQSQGDGKGEYGRECDWWSL  267 (1317)
T ss_pred             cc--ceeccCCcceeEecccC----cEeeccchhHHhcCCCCcEEeccccCCCCccCHHHHHhhcCCccccCCccchhhh
Confidence            99  99999999999999888    799999999998873      3357999999999888877664555445789999


Q ss_pred             heeheecccC
Q 024842          252 QILMRELMFG  261 (262)
Q Consensus       252 g~~~~~l~~G  261 (262)
                      |+++|||++|
T Consensus       268 GV~~YEMlyG  277 (1317)
T KOG0612|consen  268 GVFMYEMLYG  277 (1317)
T ss_pred             HHHHHHHHcC
Confidence            9999999998

>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

Probab=99.97  E-value=4.2e-31  Score=219.97  Aligned_cols=184  Identities=23%  Similarity=0.241  Sum_probs=147.4

Q ss_pred             EEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc---chHHHHHHHHHHHHhhhCCCCCcc
Q 024842           32 RQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ---NNEQLEMVREEIRVSSLFSHRNLL  108 (262)
Q Consensus        32 ~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~---~~~~~~~~~~E~~~l~~l~h~~i~  108 (262)
                      +.||+|+||.||++.+..+++                      .+|+|.+...   .......+..|+.+++.++||||+
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~----------------------~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~~~hp~i~   58 (325)
T cd05594           1 KLLGKGTFGKVILVKEKATGR----------------------YYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLT   58 (325)
T ss_pred             CeeeeCCCEEEEEEEECCCCC----------------------EEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCC
Confidence            468999999999999877655                      5666665432   233345677899999999999999


Q ss_pred             chhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHc-CCCCeeecCC
Q 024842          109 PLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHS-LEPPYAHNDV  187 (262)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~-~~~~ivH~di  187 (262)
                      ++...+          ......+++|||+.+++|.+++.    ....+++..++.++.||+.||.|||+ .+  |+||||
T Consensus        59 ~~~~~~----------~~~~~~~lv~E~~~~~~L~~~l~----~~~~l~~~~~~~~~~qi~~aL~~lH~~~~--ivHrDi  122 (325)
T cd05594          59 ALKYSF----------QTHDRLCFVMEYANGGELFFHLS----RERVFSEDRARFYGAEIVSALDYLHSEKN--VVYRDL  122 (325)
T ss_pred             ceEEEE----------EcCCEEEEEEeCCCCCcHHHHHH----hcCCCCHHHHHHHHHHHHHHHHHHHhcCC--EEecCC
Confidence            998877          34678999999999999988775    44569999999999999999999997 68  999999


Q ss_pred             CCCcEEEecCCCCCCceEEeeccceeecccc-----CccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecccCC
Q 024842          188 KPGNILITCRKGQPPLAILMDFGSARPAQSK-----FALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMFGR  262 (262)
Q Consensus       188 kp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~-----~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~G~  262 (262)
                      ||+|||++.++    .+||+|||++......     ...++..|.+||.+..-.     .-...|+||+|+++|+|++|+
T Consensus       123 kp~NIll~~~~----~~kL~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-----~~~~~DiwslG~il~el~tG~  193 (325)
T cd05594         123 KLENLMLDKDG----HIKITDFGLCKEGIKDGATMKTFCGTPEYLAPEVLEDND-----YGRAVDWWGLGVVMYEMMCGR  193 (325)
T ss_pred             CCCeEEECCCC----CEEEecCCCCeecCCCCcccccccCCcccCCHHHHccCC-----CCCccccccccceeeeeccCC
Confidence            99999998776    6999999998753221     124677888888653321     223589999999999999985

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien

>KOG0586 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.97  E-value=1.2e-31  Score=225.91  Aligned_cols=192  Identities=21%  Similarity=0.287  Sum_probs=167.2

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc--chHHHHHHHHHHHHhhhC
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ--NNEQLEMVREEIRVSSLF  102 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~--~~~~~~~~~~E~~~l~~l  102 (262)
                      -..|.+.+.||+|.|+.|.++++..++.                      .||+|.+...  +....+.+.+|+.+++.+
T Consensus        55 vg~y~i~~tig~g~f~~V~La~~~~t~~----------------------~VaiK~idkt~ln~~~~~k~~rev~imk~l  112 (596)
T KOG0586|consen   55 VGLYVIIKTIGKGNFAKVKLARHILTGT----------------------EVAIKIIDKTQLNPSKRQKLGREVDIMKSL  112 (596)
T ss_pred             ccceeeeeeeccceeEEEEeeEecCCCc----------------------eEEEEEehhcccChHHHHHHHHHHHHHHhc
Confidence            4579999999999999999999998765                      5777766544  334446688999999999


Q ss_pred             CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCe
Q 024842          103 SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPY  182 (262)
Q Consensus       103 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~i  182 (262)
                      +||||++++.+.          .....+|+||||..++.+++++.    +.+...+.++..++.|+++|++|||+++  |
T Consensus       113 ~HPnIvkl~~v~----------~t~~~lylV~eya~~ge~~~yl~----~~gr~~e~~ar~~F~q~vsaveYcH~k~--i  176 (596)
T KOG0586|consen  113 NHPNIVKLFSVI----------ETEATLYLVMEYASGGELFDYLV----KHGRMKEKEARAKFRQIVSAVEYCHSKN--I  176 (596)
T ss_pred             CCcceeeeeeee----------eecceeEEEEEeccCchhHHHHH----hcccchhhhhhhhhHHHHHHHHHHhhcc--e
Confidence            999999999987          44778999999999999999987    5666888999999999999999999998  9


Q ss_pred             eecCCCCCcEEEecCCCCCCceEEeeccceeeccccC----ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheec
Q 024842          183 AHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMREL  258 (262)
Q Consensus       183 vH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l  258 (262)
                      +|||||++|||++.+.    .+||+|||++..+....    ..+++.|.+||-..+..+.-.|    -|+|++|+++|-|
T Consensus       177 vHrdLk~eNilL~~~m----nikIaDfgfS~~~~~~~~lqt~cgsppyAaPEl~~g~~y~gpe----~D~Wslgvvly~L  248 (596)
T KOG0586|consen  177 VHRDLKAENILLDENM----NIKIADFGFSTFFDYGLMLQTFCGSPPYAAPELFNGKKYDGPE----VDIWSLGVVLYAL  248 (596)
T ss_pred             eccccchhhccccccc----ceeeeccccceeecccccccccCCCCCccChHhhcCcccCCcc----eehhhhhhhheee
Confidence            9999999999998887    59999999999887544    3688999999998888877666    6899999999999


Q ss_pred             ccCC
Q 024842          259 MFGR  262 (262)
Q Consensus       259 ~~G~  262 (262)
                      ++|.
T Consensus       249 V~Gs  252 (596)
T KOG0586|consen  249 VEGS  252 (596)
T ss_pred             eecc
Confidence            9884

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=99.97  E-value=2.5e-31  Score=232.08  Aligned_cols=209  Identities=18%  Similarity=0.192  Sum_probs=158.5

Q ss_pred             CceeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc--chHHHHHHHHHH
Q 024842           19 GDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ--NNEQLEMVREEI   96 (262)
Q Consensus        19 ~~~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~--~~~~~~~~~~E~   96 (262)
                      .......++|++.+.||+|+||.||+|++..+++                      .||+|.+...  .......+.+|+
T Consensus        25 ~~~~~~~~rY~i~~~LG~G~fG~Vy~a~~~~~g~----------------------~vAvK~i~~~~~~~~~~~~~~~Ei   82 (496)
T PTZ00283         25 ATAKEQAKKYWISRVLGSGATGTVLCAKRVSDGE----------------------PFAVKVVDMEGMSEADKNRAQAEV   82 (496)
T ss_pred             ccccccCCCEEEEEEEecCCCEEEEEEEEcCCCC----------------------EEEEEEEecccCCHHHHHHHHHHH
Confidence            3444567899999999999999999999876655                      6788876543  334456778899


Q ss_pred             HHhhhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHH
Q 024842           97 RVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMH  176 (262)
Q Consensus        97 ~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH  176 (262)
                      ..+..++|+|++++...+.....  .........+++|||+.+++|.+++.........+++..++.++.|++.||.|||
T Consensus        83 ~~l~~~~h~~iv~~~~~~~~~~~--~~~~~~~~i~lV~Ey~~~gsL~~~l~~~~~~~~~l~e~~~~~i~~qll~aL~~lH  160 (496)
T PTZ00283         83 CCLLNCDFFSIVKCHEDFAKKDP--RNPENVLMIALVLDYANAGDLRQEIKSRAKTNRTFREHEAGLLFIQVLLAVHHVH  160 (496)
T ss_pred             HHHhcCCCCcEEEeecceecccc--cCcccceEEEEEEeCCCCCcHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            99999999999998876632100  0011122468999999999999988765545567999999999999999999999


Q ss_pred             cCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeecccc-------CccCcccCCcccchhhhhhhhhhhhhcCccc
Q 024842          177 SLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSK-------FALGQRRYSCRNGLLSIVLHLSELLSCGTVR  249 (262)
Q Consensus       177 ~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~-------~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~  249 (262)
                      +.+  |+||||||+|||++.++    .+||+|||++..+...       ...+++.|.+||.+....     .....|||
T Consensus       161 ~~~--IiHrDLKP~NILl~~~~----~vkL~DFGls~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~-----~s~k~DVw  229 (496)
T PTZ00283        161 SKH--MIHRDIKSANILLCSNG----LVKLGDFGFSKMYAATVSDDVGRTFCGTPYYVAPEIWRRKP-----YSKKADMF  229 (496)
T ss_pred             hCC--EecCCCCHHHEEEeCCC----CEEEEecccCeeccccccccccccccCCcceeCHHHhCCCC-----CCcHHHHH
Confidence            988  99999999999998776    6999999999765432       124667777777553221     12346788


Q ss_pred             chheeheecccCC
Q 024842          250 VIQILMRELMFGR  262 (262)
Q Consensus       250 ~~g~~~~~l~~G~  262 (262)
                      |+|+++|||++|+
T Consensus       230 SlGvilyeLltG~  242 (496)
T PTZ00283        230 SLGVLLYELLTLK  242 (496)
T ss_pred             HHHHHHHHHHHCC
Confidence            8888888887774

>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

Probab=99.97  E-value=1e-31  Score=224.32  Aligned_cols=193  Identities=19%  Similarity=0.235  Sum_probs=153.0

Q ss_pred             ecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc-chHHHHHHHHHHHHhhh
Q 024842           23 INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ-NNEQLEMVREEIRVSSL  101 (262)
Q Consensus        23 ~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~-~~~~~~~~~~E~~~l~~  101 (262)
                      +..++|++.+.||+|+||.||++.+..+++                      .+++|.+... .......+.+|+++++.
T Consensus         2 l~~~~y~~~~~lg~g~~g~V~~~~~~~~~~----------------------~~a~k~~~~~~~~~~~~~~~~E~~~l~~   59 (333)
T cd06650           2 LKDDDFEKISELGAGNGGVVFKVSHKPSGL----------------------IMARKLIHLEIKPAIRNQIIRELQVLHE   59 (333)
T ss_pred             cchhhhheeccccCCCCEEEEEEEECCCCc----------------------EEEEEEeecccCHHHHHHHHHHHHHHHH
Confidence            456899999999999999999999886655                      4566655443 23344678899999999


Q ss_pred             CCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHc-CCC
Q 024842          102 FSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHS-LEP  180 (262)
Q Consensus       102 l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~-~~~  180 (262)
                      ++||||+++++++.          ..+..+++|||+.+++|.+++.    ....+++..+..++.|++.||.|||+ .+ 
T Consensus        60 l~h~~iv~~~~~~~----------~~~~~~lv~e~~~~~~L~~~l~----~~~~~~~~~~~~~~~~l~~~l~~lH~~~~-  124 (333)
T cd06650          60 CNSPYIVGFYGAFY----------SDGEISICMEHMDGGSLDQVLK----KAGRIPEQILGKVSIAVIKGLTYLREKHK-  124 (333)
T ss_pred             CCCCcccceeEEEE----------ECCEEEEEEecCCCCcHHHHHH----HcCCCCHHHHHHHHHHHHHHHHHHHhcCC-
Confidence            99999999999873          3568999999999999999886    34558999999999999999999997 36 


Q ss_pred             CeeecCCCCCcEEEecCCCCCCceEEeeccceeecccc---CccCcccCCcccchhhhhhhhhhhhhcCcccchheehee
Q 024842          181 PYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSK---FALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRE  257 (262)
Q Consensus       181 ~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~---~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~  257 (262)
                       ++|+||||+|||++.++    .+||+|||++......   ...++..|.+||.+....     .....|+|++|+++|+
T Consensus       125 -ivH~dlkp~Nili~~~~----~~kL~Dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-----~~~~~DvwslG~il~~  194 (333)
T cd06650         125 -IMHRDVKPSNILVNSRG----EIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTH-----YSVQSDIWSMGLSLVE  194 (333)
T ss_pred             -EEecCCChhhEEEcCCC----CEEEeeCCcchhhhhhccccCCCCccccCHHHhcCCC-----CCcHHHHHHHHHHHHH
Confidence             99999999999998766    6999999998765432   234666777777553221     1223688888888888


Q ss_pred             cccCC
Q 024842          258 LMFGR  262 (262)
Q Consensus       258 l~~G~  262 (262)
                      |++|+
T Consensus       195 l~~g~  199 (333)
T cd06650         195 MAIGR  199 (333)
T ss_pred             HHHCC
Confidence            88774

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst

>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

Probab=99.97  E-value=3.4e-31  Score=220.28  Aligned_cols=189  Identities=20%  Similarity=0.249  Sum_probs=147.7

Q ss_pred             ceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc---chHHHHHHHHHHHHhhhCC
Q 024842           27 RYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ---NNEQLEMVREEIRVSSLFS  103 (262)
Q Consensus        27 ~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~---~~~~~~~~~~E~~~l~~l~  103 (262)
                      +|++.+.||+|+||.||+|.+..+++                      .||+|.+...   .....+.+..|..+++.+.
T Consensus         1 ~f~~~~~lg~G~~g~Vy~~~~~~~~~----------------------~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~   58 (323)
T cd05615           1 DFNFLMVLGKGSFGKVMLAERKGTDE----------------------LYAIKILKKDVVIQDDDVECTMVEKRVLALQD   58 (323)
T ss_pred             CceEEEEEEecCCeEEEEEEECCCCC----------------------EEEEEEEEHHHhhhhhHHHHHHHHHHHHHhcc
Confidence            47889999999999999999887655                      5777765432   2233455677888888876


Q ss_pred             -CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCe
Q 024842          104 -HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPY  182 (262)
Q Consensus       104 -h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~i  182 (262)
                       |++|++++..+          ...+..|++|||+.+++|.+++.    ....+++.+++.++.|++.||.|||+++  +
T Consensus        59 ~~~~i~~~~~~~----------~~~~~~~lv~Ey~~~g~L~~~i~----~~~~l~~~~~~~i~~qi~~al~~lH~~~--i  122 (323)
T cd05615          59 KPPFLTQLHSCF----------QTVDRLYFVMEYVNGGDLMYHIQ----QVGKFKEPQAVFYAAEISVGLFFLHRRG--I  122 (323)
T ss_pred             CCCchhheeeEE----------ecCCEEEEEEcCCCCCcHHHHHH----HcCCCCHHHHHHHHHHHHHHHHHHHHCC--e
Confidence             56777787776          33567999999999999998875    4456999999999999999999999998  9


Q ss_pred             eecCCCCCcEEEecCCCCCCceEEeeccceeecccc-----CccCcccCCcccchhhhhhhhhhhhhcCcccchheehee
Q 024842          183 AHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSK-----FALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRE  257 (262)
Q Consensus       183 vH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~-----~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~  257 (262)
                      +||||||+|||++.++    .++|+|||++......     ...++..|.+||.+..-.     .....|+||+|+++|+
T Consensus       123 vHrDikp~Nill~~~~----~ikL~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-----~~~~~DiwslGvil~e  193 (323)
T cd05615         123 IYRDLKLDNVMLDSEG----HIKIADFGMCKEHMVDGVTTRTFCGTPDYIAPEIIAYQP-----YGKSVDWWAYGVLLYE  193 (323)
T ss_pred             eccCCCHHHeEECCCC----CEEEeccccccccCCCCccccCccCCccccCHHHHcCCC-----CCCccchhhhHHHHHH
Confidence            9999999999998776    6999999998754322     224677788887653321     2234789999999999


Q ss_pred             cccCC
Q 024842          258 LMFGR  262 (262)
Q Consensus       258 l~~G~  262 (262)
                      |++|+
T Consensus       194 lltG~  198 (323)
T cd05615         194 MLAGQ  198 (323)
T ss_pred             HHhCC
Confidence            88885

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a

>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

Probab=99.97  E-value=4.3e-31  Score=223.86  Aligned_cols=194  Identities=25%  Similarity=0.310  Sum_probs=145.0

Q ss_pred             ceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc--chHHHHHHHHHHHHhhhCCC
Q 024842           27 RYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ--NNEQLEMVREEIRVSSLFSH  104 (262)
Q Consensus        27 ~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~--~~~~~~~~~~E~~~l~~l~h  104 (262)
                      +|++.+.||+|+||.||++.+..+++                      .||+|++...  .....+.+.+|+.+++.++|
T Consensus         1 ~~~~~~~lg~G~~g~V~~~~~~~~~~----------------------~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h   58 (372)
T cd07853           1 DVEPDRPIGYGAFGVVWSVTDPRDGK----------------------RVALKKMPNVFQNLVSCKRVFRELKMLCFFKH   58 (372)
T ss_pred             CCcccceeeeCCCEEEEEEEECCCCC----------------------EEEEEeccccccchHHHHHHHHHHHHHHhCCC
Confidence            47889999999999999999876655                      5777766432  23344678899999999999


Q ss_pred             CCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeee
Q 024842          105 RNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAH  184 (262)
Q Consensus       105 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH  184 (262)
                      +||+++++.+...     ........|++|||+. ++|.+.+.    ....+++..++.++.|++.||.|||+.+  ++|
T Consensus        59 ~niv~~~~~~~~~-----~~~~~~~~~lv~e~~~-~~l~~~~~----~~~~l~~~~~~~~~~qi~~aL~~LH~~~--ivH  126 (372)
T cd07853          59 DNVLSALDILQPP-----HIDPFEEIYVVTELMQ-SDLHKIIV----SPQPLSSDHVKVFLYQILRGLKYLHSAG--ILH  126 (372)
T ss_pred             CCcCCHhheecCC-----CccccceEEEEeeccc-cCHHHHHh----cCCCCCHHHHHHHHHHHHHHHHHHHhCC--eeC
Confidence            9999999987420     0011236899999876 57777664    4556999999999999999999999998  999


Q ss_pred             cCCCCCcEEEecCCCCCCceEEeeccceeeccccC------ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheec
Q 024842          185 NDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF------ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMREL  258 (262)
Q Consensus       185 ~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~------~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l  258 (262)
                      |||||+|||++.++    .+||+|||++.......      ..++..|.+||.+....    ......|+||+|++++||
T Consensus       127 ~dlkp~Nili~~~~----~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~----~~~~~~DiwslG~il~el  198 (372)
T cd07853         127 RDIKPGNLLVNSNC----VLKICDFGLARVEEPDESKHMTQEVVTQYYRAPEILMGSR----HYTSAVDIWSVGCIFAEL  198 (372)
T ss_pred             CCCChHHEEECCCC----CEEeccccceeecccCccccCCCCCcCCCcCCHHHHcCCC----CCCcHHHHHhHHHHHHHH
Confidence            99999999998766    69999999998654321      13445566666443211    011235788888888888


Q ss_pred             ccCC
Q 024842          259 MFGR  262 (262)
Q Consensus       259 ~~G~  262 (262)
                      ++|+
T Consensus       199 ~~g~  202 (372)
T cd07853         199 LGRR  202 (372)
T ss_pred             HcCC
Confidence            8775

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription

>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

Probab=99.97  E-value=4.2e-31  Score=219.65  Aligned_cols=184  Identities=20%  Similarity=0.272  Sum_probs=142.3

Q ss_pred             EEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc---chHHHHHHHHHH-HHhhhCCCCCc
Q 024842           32 RQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ---NNEQLEMVREEI-RVSSLFSHRNL  107 (262)
Q Consensus        32 ~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~---~~~~~~~~~~E~-~~l~~l~h~~i  107 (262)
                      +.||+|+||.||+|++..+++                      .+++|.+...   .......+..|. .+++.++||||
T Consensus         1 ~~lg~G~~g~Vy~~~~~~~~~----------------------~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~i   58 (321)
T cd05603           1 KVIGKGSFGKVLLAKRKSDGS----------------------FYAVKVLQKKTILKKKEQNHIMAERNVLLKNLKHPFL   58 (321)
T ss_pred             CeeeeCCCEEEEEEEECCCCC----------------------EEEEEEEEHHHHHHhhHHHHHHHHHHHHHHhCCCCCc
Confidence            369999999999999876655                      5677765432   122233444454 45788999999


Q ss_pred             cchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeeecCC
Q 024842          108 LPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDV  187 (262)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~di  187 (262)
                      +++++.+          ......|++|||+.+++|...+.    ....+++..++.++.|++.||.|||+.+  |+||||
T Consensus        59 v~~~~~~----------~~~~~~~lv~e~~~~~~L~~~l~----~~~~~~~~~~~~~~~qi~~~L~~lH~~~--ivH~Dl  122 (321)
T cd05603          59 VGLHYSF----------QTAEKLYFVLDYVNGGELFFHLQ----RERCFLEPRARFYAAEVASAIGYLHSLN--IIYRDL  122 (321)
T ss_pred             cceeeEE----------EcCCEEEEEEcCCCCCCHHHHHH----HcCCCCHHHHHHHHHHHHHHHHHHHHCC--eEeccC
Confidence            9999877          34667999999999999987775    4456899999999999999999999988  999999


Q ss_pred             CCCcEEEecCCCCCCceEEeeccceeecccc-----CccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecccCC
Q 024842          188 KPGNILITCRKGQPPLAILMDFGSARPAQSK-----FALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMFGR  262 (262)
Q Consensus       188 kp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~-----~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~G~  262 (262)
                      ||+||+++.++    .+||+|||++......     ...++..|.+||.+....     .....|+|++|+++|+|++|+
T Consensus       123 kp~NIll~~~~----~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-----~~~~~DiwslG~il~el~~g~  193 (321)
T cd05603         123 KPENILLDSQG----HVVLTDFGLCKEGVEPEETTSTFCGTPEYLAPEVLRKEP-----YDRTVDWWCLGAVLYEMLYGL  193 (321)
T ss_pred             CHHHeEECCCC----CEEEccCCCCccCCCCCCccccccCCcccCCHHHhcCCC-----CCCcCcccccchhhhhhhcCC
Confidence            99999998776    6999999998753221     124667788887654322     123579999999999999885

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.

>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

Probab=99.97  E-value=4.5e-31  Score=219.82  Aligned_cols=184  Identities=20%  Similarity=0.299  Sum_probs=143.8

Q ss_pred             EEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc---chHHHHHHHHHHH-HhhhCCCCCc
Q 024842           32 RQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ---NNEQLEMVREEIR-VSSLFSHRNL  107 (262)
Q Consensus        32 ~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~---~~~~~~~~~~E~~-~l~~l~h~~i  107 (262)
                      +.||+|+||.||+|++..+++                      .+++|.+...   .......+..|.. +++.++||||
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~----------------------~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~hp~i   58 (325)
T cd05604           1 KVIGKGSFGKVLLAKRKLDGK----------------------CYAVKVLQKKIVLNRKEQKHIMAERNVLLKNVKHPFL   58 (325)
T ss_pred             CceeeCCCeEEEEEEECCCCC----------------------EEEEEEEEHHHhhhhhHHHHHHHHHHHHHHhCCCCCC
Confidence            368999999999999877655                      5677765432   2222344455544 4678999999


Q ss_pred             cchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeeecCC
Q 024842          108 LPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDV  187 (262)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~di  187 (262)
                      ++++..+          ...+..|++|||+.+++|..++.    ....+++..++.++.||+.||.|||+.+  ++||||
T Consensus        59 v~~~~~~----------~~~~~~~lv~e~~~~~~L~~~l~----~~~~~~~~~~~~~~~qi~~al~~lH~~g--ivH~Dl  122 (325)
T cd05604          59 VGLHYSF----------QTTEKLYFVLDFVNGGELFFHLQ----RERSFPEPRARFYAAEIASALGYLHSIN--IVYRDL  122 (325)
T ss_pred             ccEEEEE----------ecCCEEEEEEcCCCCCCHHHHHH----HcCCCCHHHHHHHHHHHHHHHHHHHHCC--eeecCC
Confidence            9999877          34678999999999999988775    4556999999999999999999999998  999999


Q ss_pred             CCCcEEEecCCCCCCceEEeeccceeecccc-----CccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecccCC
Q 024842          188 KPGNILITCRKGQPPLAILMDFGSARPAQSK-----FALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMFGR  262 (262)
Q Consensus       188 kp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~-----~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~G~  262 (262)
                      ||+|||++.++    .+||+|||++......     ...++..|++||.+....+     ....|+|++|+++|+|++|+
T Consensus       123 kp~NIll~~~~----~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-----~~~~DvwslG~il~el~~G~  193 (325)
T cd05604         123 KPENILLDSQG----HVVLTDFGLCKEGIAQSDTTTTFCGTPEYLAPEVIRKQPY-----DNTVDWWCLGAVLYEMLYGL  193 (325)
T ss_pred             CHHHeEECCCC----CEEEeecCCcccCCCCCCCcccccCChhhCCHHHHcCCCC-----CCcCccccccceehhhhcCC
Confidence            99999998776    6999999998753221     2246777888886643221     23579999999999999985

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,

>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

Probab=99.97  E-value=5.4e-31  Score=219.26  Aligned_cols=187  Identities=20%  Similarity=0.281  Sum_probs=145.2

Q ss_pred             eEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc---chHHHHHHHHHHHHh---hh
Q 024842           28 YRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ---NNEQLEMVREEIRVS---SL  101 (262)
Q Consensus        28 y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~---~~~~~~~~~~E~~~l---~~  101 (262)
                      |++.+.||+|+||.||+|.+..+++                      .+|+|.+...   .....+.+..|+.++   +.
T Consensus         1 y~i~~~lg~G~~g~Vy~~~~~~~~~----------------------~~aiK~~~~~~~~~~~~~~~l~~e~~~~~~~~~   58 (324)
T cd05589           1 FRCLAVLGRGHFGKVLLAEYKKTGE----------------------LYAIKALKKGDIIARDEVESLMCEKRIFETANS   58 (324)
T ss_pred             CeEEEEEeecCCEEEEEEEECCCCC----------------------EEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccc
Confidence            7889999999999999999887655                      5677765432   222335566666554   56


Q ss_pred             CCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCC
Q 024842          102 FSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPP  181 (262)
Q Consensus       102 l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~  181 (262)
                      ++||||+++++++          ......|++|||+.+++|...+.     ...+++..++.++.|++.||.|||+++  
T Consensus        59 l~hp~i~~~~~~~----------~~~~~~~lv~E~~~~~~L~~~~~-----~~~l~~~~~~~~~~qi~~al~~lH~~~--  121 (324)
T cd05589          59 ERHPFLVNLFACF----------QTEDHVCFVMEYAAGGDLMMHIH-----TDVFSEPRAVFYAACVVLGLQYLHENK--  121 (324)
T ss_pred             cCCCChhceeeEE----------EcCCEEEEEEcCCCCCcHHHHhh-----cCCCCHHHHHHHHHHHHHHHHHHHhCC--
Confidence            6899999999987          34667999999999999987763     345999999999999999999999998  


Q ss_pred             eeecCCCCCcEEEecCCCCCCceEEeeccceeecccc-----CccCcccCCcccchhhhhhhhhhhhhcCcccchheehe
Q 024842          182 YAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSK-----FALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMR  256 (262)
Q Consensus       182 ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~-----~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~  256 (262)
                      ++||||||+||+++.++    .+||+|||++......     ...++..|.+||.+....     .....|+||+|+++|
T Consensus       122 ivHrdlkp~Nill~~~~----~~kL~Dfg~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~-----~~~~~DiwslG~il~  192 (324)
T cd05589         122 IVYRDLKLDNLLLDTEG----FVKIADFGLCKEGMGFGDRTSTFCGTPEFLAPEVLTETS-----YTRAVDWWGLGVLIY  192 (324)
T ss_pred             eEecCCCHHHeEECCCC----cEEeCcccCCccCCCCCCcccccccCccccCHhHhcCCC-----CCcccchhhHHHHHH
Confidence            99999999999998776    6999999998753221     124667788887553321     123468888888888


Q ss_pred             ecccCC
Q 024842          257 ELMFGR  262 (262)
Q Consensus       257 ~l~~G~  262 (262)
                      +|++|+
T Consensus       193 el~~G~  198 (324)
T cd05589         193 EMLVGE  198 (324)
T ss_pred             HHHhCC
Confidence            888875

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved

>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

Probab=99.97  E-value=7.7e-31  Score=218.22  Aligned_cols=189  Identities=21%  Similarity=0.248  Sum_probs=147.7

Q ss_pred             ceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc---chHHHHHHHHHHHHhhhC-
Q 024842           27 RYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ---NNEQLEMVREEIRVSSLF-  102 (262)
Q Consensus        27 ~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~---~~~~~~~~~~E~~~l~~l-  102 (262)
                      +|++.+.||+|+||.||+|++..+++                      .+|+|.+...   .....+....|..++..+ 
T Consensus         1 df~~~~~lg~G~~g~Vy~~~~~~~~~----------------------~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~   58 (323)
T cd05616           1 DFNFLMVLGKGSFGKVMLAERKGTDE----------------------LYAIKILKKDVVIQDDDVECTMVEKRVLALSG   58 (323)
T ss_pred             CceEEEEEeeCCCeEEEEEEECCCCC----------------------EEEEEEEEHHHhhhhhHHHHHHHHHHHHHhcc
Confidence            58999999999999999999887655                      5666655432   222334556677777766 


Q ss_pred             CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCe
Q 024842          103 SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPY  182 (262)
Q Consensus       103 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~i  182 (262)
                      .|++|+++++.+          ...+..+++|||+.+++|.+.+.    ....+++..++.++.|++.||+|||+.+  |
T Consensus        59 ~~~~i~~~~~~~----------~~~~~~~lv~E~~~~g~L~~~~~----~~~~~~~~~~~~~~~qi~~aL~~LH~~~--i  122 (323)
T cd05616          59 KPPFLTQLHSCF----------QTMDRLYFVMEYVNGGDLMYQIQ----QVGRFKEPHAVFYAAEIAIGLFFLHSKG--I  122 (323)
T ss_pred             CCCeEeeEEEEE----------ecCCEEEEEEcCCCCCCHHHHHH----HcCCCCHHHHHHHHHHHHHHHHHHHHCC--E
Confidence            578888888876          34667999999999999988875    4456899999999999999999999998  9


Q ss_pred             eecCCCCCcEEEecCCCCCCceEEeeccceeeccc-----cCccCcccCCcccchhhhhhhhhhhhhcCcccchheehee
Q 024842          183 AHNDVKPGNILITCRKGQPPLAILMDFGSARPAQS-----KFALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRE  257 (262)
Q Consensus       183 vH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~-----~~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~  257 (262)
                      +||||||+|||++.++    .+||+|||++.....     ....+++.|.+||.+..-.     .....|+||+|+++|+
T Consensus       123 vHrDlkp~Nill~~~~----~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-----~~~~~DiwSlGvil~e  193 (323)
T cd05616         123 IYRDLKLDNVMLDSEG----HIKIADFGMCKENMWDGVTTKTFCGTPDYIAPEIIAYQP-----YGKSVDWWAFGVLLYE  193 (323)
T ss_pred             EecCCCHHHeEECCCC----cEEEccCCCceecCCCCCccccCCCChhhcCHHHhcCCC-----CCCccchhchhHHHHH
Confidence            9999999999998776    699999999875432     1234677788887654322     2234788999999998


Q ss_pred             cccCC
Q 024842          258 LMFGR  262 (262)
Q Consensus       258 l~~G~  262 (262)
                      |++|+
T Consensus       194 lltg~  198 (323)
T cd05616         194 MLAGQ  198 (323)
T ss_pred             HHhCC
Confidence            88885

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and

>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=1.1e-30  Score=213.69  Aligned_cols=191  Identities=22%  Similarity=0.235  Sum_probs=147.5

Q ss_pred             ceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc---hHHHHHHHHHHHHhhhCC
Q 024842           27 RYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN---NEQLEMVREEIRVSSLFS  103 (262)
Q Consensus        27 ~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~---~~~~~~~~~E~~~l~~l~  103 (262)
                      +|++.+.||+|+||.||++.+..+++                      .+|+|++....   ......+.+|+.+++.++
T Consensus         1 ~y~~~~~lg~G~~g~V~~~~~~~~~~----------------------~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~   58 (285)
T cd05605           1 TFRHYRVLGKGGFGEVCACQVRATGK----------------------MYACKKLEKKRIKKRKGEAMALNEKQILEKVN   58 (285)
T ss_pred             CceEEEEEecCCCeEEEEEEEcCCCc----------------------eEEEEEEehhhhhhhhhHHHHHHHHHHHHhcC
Confidence            48999999999999999999876544                      67777664332   222345678999999999


Q ss_pred             CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCee
Q 024842          104 HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYA  183 (262)
Q Consensus       104 h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~iv  183 (262)
                      ||||+++++.+          .+....+++|||+.+++|.+++...  ....+++..+..++.|++.||.|||+.+  ++
T Consensus        59 h~~iv~~~~~~----------~~~~~~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~~~~qi~~~l~~lH~~~--iv  124 (285)
T cd05605          59 SRFVVSLAYAY----------ETKDALCLVLTLMNGGDLKFHIYNM--GNPGFDEERAVFYAAEITCGLEDLHRER--IV  124 (285)
T ss_pred             CCCEeeeeeee----------cCCCeEEEEEeccCCCcHHHHHHhc--CcCCCCHHHHHHHHHHHHHHHHHHHHCC--cE
Confidence            99999999887          3356799999999999998876522  2345899999999999999999999998  99


Q ss_pred             ecCCCCCcEEEecCCCCCCceEEeeccceeeccccC----ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecc
Q 024842          184 HNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELM  259 (262)
Q Consensus       184 H~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~  259 (262)
                      |+||||+||+++.++    .++|+|||++.......    ..++..|.+||.+-.-     ......|+|++|+++|+|+
T Consensus       125 H~dlkp~Nil~~~~~----~~~l~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-----~~~~~~Diws~G~~l~el~  195 (285)
T cd05605         125 YRDLKPENILLDDYG----HIRISDLGLAVEIPEGETIRGRVGTVGYMAPEVVKNE-----RYTFSPDWWGLGCLIYEMI  195 (285)
T ss_pred             ecCCCHHHEEECCCC----CEEEeeCCCceecCCCCccccccCCCCccCcHHhcCC-----CCCccccchhHHHHHHHHH
Confidence            999999999998766    69999999998754322    2355667777654221     1122367777777777777


Q ss_pred             cCC
Q 024842          260 FGR  262 (262)
Q Consensus       260 ~G~  262 (262)
                      +|+
T Consensus       196 ~g~  198 (285)
T cd05605         196 EGK  198 (285)
T ss_pred             HCC
Confidence            774

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,

>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

Probab=99.97  E-value=5.6e-31  Score=218.41  Aligned_cols=195  Identities=18%  Similarity=0.238  Sum_probs=146.6

Q ss_pred             ecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc-chHHHHHHHHHHHHhhh
Q 024842           23 INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ-NNEQLEMVREEIRVSSL  101 (262)
Q Consensus        23 ~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~-~~~~~~~~~~E~~~l~~  101 (262)
                      +...+|++.+.||+|+||.||+|.+..+++...                  ..+++|..... .....+.+.+|+.+++.
T Consensus         4 ~~~~~f~~~~~lg~G~~g~Vy~~~~~~~~~~~~------------------~~vaiK~~~~~~~~~~~~~~~~e~~~l~~   65 (316)
T cd05108           4 LKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVK------------------IPVAIKELREATSPKANKEILDEAYVMAS   65 (316)
T ss_pred             cchhhceeeeeeecCCCceEEEEEEecCCCccc------------------eeEEEEeccccCCHHHHHHHHHHHHHHHh
Confidence            456789999999999999999999876554321                  24788877644 33445678899999999


Q ss_pred             CCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCC
Q 024842          102 FSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPP  181 (262)
Q Consensus       102 l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~  181 (262)
                      ++||||+++++.+.           ....+++++++.+|+|.+++..   ....+++..++.++.|++.||+|||+.+  
T Consensus        66 l~h~niv~~~g~~~-----------~~~~~~v~e~~~~g~l~~~l~~---~~~~~~~~~~~~~~~qi~~~L~~LH~~~--  129 (316)
T cd05108          66 VDNPHVCRLLGICL-----------TSTVQLITQLMPFGCLLDYVRE---HKDNIGSQYLLNWCVQIAKGMNYLEERR--  129 (316)
T ss_pred             CCCCCCCeEEEEEc-----------CCCceeeeecCCCCCHHHHHHh---ccccCCHHHHHHHHHHHHHHHHHHHhcC--
Confidence            99999999999874           2346789999999999998762   2345889999999999999999999998  


Q ss_pred             eeecCCCCCcEEEecCCCCCCceEEeeccceeeccccCc-------cCcccCCcccchhhhhhhhhhhhhcCcccchhee
Q 024842          182 YAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKFA-------LGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQIL  254 (262)
Q Consensus       182 ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~~-------~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~  254 (262)
                      ++||||||+||+++.++    .+||+|||++........       ..+..|.+|+.+....     .....|+||+|++
T Consensus       130 iiH~dlkp~Nill~~~~----~~kl~DfG~a~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~-----~~~~~Di~slGv~  200 (316)
T cd05108         130 LVHRDLAARNVLVKTPQ----HVKITDFGLAKLLGADEKEYHAEGGKVPIKWMALESILHRI-----YTHQSDVWSYGVT  200 (316)
T ss_pred             eeccccchhheEecCCC----cEEEccccccccccCCCcceeccCCccceeecChHHhccCC-----CCchhhhHHHHHH
Confidence            99999999999998766    699999999986543221       1123455555332211     1123566666666


Q ss_pred             heeccc
Q 024842          255 MRELMF  260 (262)
Q Consensus       255 ~~~l~~  260 (262)
                      +|||++
T Consensus       201 l~el~t  206 (316)
T cd05108         201 VWELMT  206 (316)
T ss_pred             HHHHHc
Confidence            666654

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=99.97  E-value=1e-30  Score=236.13  Aligned_cols=194  Identities=25%  Similarity=0.372  Sum_probs=151.7

Q ss_pred             CceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc---chHHHHHHHHHHHHhhhC
Q 024842           26 NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ---NNEQLEMVREEIRVSSLF  102 (262)
Q Consensus        26 ~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~---~~~~~~~~~~E~~~l~~l  102 (262)
                      ++|++.+.||+|+||.||+|.+..+++                      .||+|++...   .....+++.+|+.+++.+
T Consensus         2 grYeIi~~LGkGgfG~VYlA~d~~tg~----------------------~VAIK~I~~~l~~~e~~~~rflrEi~ILs~L   59 (932)
T PRK13184          2 QRYDIIRLIGKGGMGEVYLAYDPVCSR----------------------RVALKKIREDLSENPLLKKRFLREAKIAADL   59 (932)
T ss_pred             CCeEEEEEEecCCCEEEEEEEECCCCc----------------------EEEEEEECcccccCHHHHHHHHHHHHHHHhC
Confidence            589999999999999999999887655                      5677766432   233456788999999999


Q ss_pred             CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhc-------CCCCCHHHHHHHHHHHHHHHHHH
Q 024842          103 SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTK-------KEFFSTSDVLQIFYQICAGLKHM  175 (262)
Q Consensus       103 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~-------~~~~~~~~~~~i~~ql~~~l~~l  175 (262)
                      +||||+++++.+          ...+..+++|||+.+++|.+++......       ....+...++.++.|++.||+||
T Consensus        60 ~HPNIVkl~~v~----------~d~~~lyLVMEY~eGGSL~~lL~s~~~~~~l~e~~~~~lsv~~iL~I~~QIa~AL~yL  129 (932)
T PRK13184         60 IHPGIVPVYSIC----------SDGDPVYYTMPYIEGYTLKSLLKSVWQKESLSKELAEKTSVGAFLSIFHKICATIEYV  129 (932)
T ss_pred             CCcCcCeEEEEE----------eeCCEEEEEEEcCCCCCHHHHHHHhhhccccchhhhcccCHHHHHHHHHHHHHHHHHH
Confidence            999999999877          3456789999999999999988643211       12356677899999999999999


Q ss_pred             HcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeecccc-----------------------CccCcccCCcccch
Q 024842          176 HSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSK-----------------------FALGQRRYSCRNGL  232 (262)
Q Consensus       176 H~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~-----------------------~~~~~~~~~~~~d~  232 (262)
                      |+.+  |+||||||+||+++.++    .++|+|||++......                       ...+++.|.+||.+
T Consensus       130 Hs~G--IIHRDLKPeNILLd~dg----~vKLiDFGLAk~i~~~~~~~~~l~~~~~~s~~s~~t~~g~~vGT~~YmAPE~l  203 (932)
T PRK13184        130 HSKG--VLHRDLKPDNILLGLFG----EVVILDWGAAIFKKLEEEDLLDIDVDERNICYSSMTIPGKIVGTPDYMAPERL  203 (932)
T ss_pred             HHCC--ccccCCchheEEEcCCC----CEEEEecCcceecccccccccccccccccccccccccCCCCCCCCCCCCHHHh
Confidence            9998  99999999999998776    6999999999865211                       12356677777755


Q ss_pred             hhhhhhhhhhhhcCcccchheeheecccCC
Q 024842          233 LSIVLHLSELLSCGTVRVIQILMRELMFGR  262 (262)
Q Consensus       233 ~s~g~~~~e~~~~~~v~~~g~~~~~l~~G~  262 (262)
                      ....     .....|+||+|++++||++|+
T Consensus       204 ~g~~-----~S~kSDIWSLGVILyELLTG~  228 (932)
T PRK13184        204 LGVP-----ASESTDIYALGVILYQMLTLS  228 (932)
T ss_pred             cCCC-----CCcHhHHHHHHHHHHHHHHCC
Confidence            3322     122468888888888888885

>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

Probab=99.97  E-value=8.3e-31  Score=217.34  Aligned_cols=184  Identities=21%  Similarity=0.276  Sum_probs=141.3

Q ss_pred             EEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc---chHHHHHHHHHHHHhhh-CCCCCc
Q 024842           32 RQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ---NNEQLEMVREEIRVSSL-FSHRNL  107 (262)
Q Consensus        32 ~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~---~~~~~~~~~~E~~~l~~-l~h~~i  107 (262)
                      +.||+|+||.||+|++..+++                      .||+|.+...   .....+....|..++.. .+||||
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~----------------------~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~i   58 (316)
T cd05592           1 KVLGKGSFGKVMLAELKGTNE----------------------FFAIKALKKDVVLEDDDVECTMVERRVLALAWEHPFL   58 (316)
T ss_pred             CeeeeCCCeEEEEEEECCCCC----------------------EEEEEEEEHHHhhhhhhHHHHHHHHHHHHhccCCCCc
Confidence            369999999999999877655                      5677765432   22233444556666654 489999


Q ss_pred             cchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeeecCC
Q 024842          108 LPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDV  187 (262)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~di  187 (262)
                      +++++.+          ......+++|||+.+++|.+++.    ....+++..++.++.|++.||.|||+.+  |+||||
T Consensus        59 ~~~~~~~----------~~~~~~~lv~e~~~gg~L~~~~~----~~~~~~~~~~~~~~~qi~~al~~LH~~~--ivH~dl  122 (316)
T cd05592          59 THLFCTF----------QTKEHLFFVMEYLNGGDLMFHIQ----SSGRFDEARARFYAAEIICGLQFLHKKG--IIYRDL  122 (316)
T ss_pred             cceeeEE----------EcCCEEEEEEcCCCCCcHHHHHH----HcCCCCHHHHHHHHHHHHHHHHHHHHCC--EEeCCC
Confidence            9999887          33567999999999999988876    3456999999999999999999999988  999999


Q ss_pred             CCCcEEEecCCCCCCceEEeeccceeecccc-----CccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecccCC
Q 024842          188 KPGNILITCRKGQPPLAILMDFGSARPAQSK-----FALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMFGR  262 (262)
Q Consensus       188 kp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~-----~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~G~  262 (262)
                      ||+||+++.++    .+||+|||++......     ...++..|.+||.+....     .....|+||+|+++|+|++|+
T Consensus       123 kp~Nill~~~~----~~kL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-----~~~~~DvwslG~il~ell~G~  193 (316)
T cd05592         123 KLDNVLLDKDG----HIKIADFGMCKENMNGEGKASTFCGTPDYIAPEILKGQK-----YNESVDWWSFGVLLYEMLIGQ  193 (316)
T ss_pred             CHHHeEECCCC----CEEEccCcCCeECCCCCCccccccCCccccCHHHHcCCC-----CCCcccchhHHHHHHHHHhCC
Confidence            99999998776    6999999999764322     124677788877553221     123478888888888888875

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp

>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

Probab=99.97  E-value=8.9e-31  Score=213.62  Aligned_cols=186  Identities=22%  Similarity=0.221  Sum_probs=144.8

Q ss_pred             eecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc---hHHHHHHHHHHHHhhhCCCCCccch
Q 024842           34 LGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN---NEQLEMVREEIRVSSLFSHRNLLPL  110 (262)
Q Consensus        34 ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~---~~~~~~~~~E~~~l~~l~h~~i~~~  110 (262)
                      ||+|+||.||++.+..+++                      .+++|.+....   ....+.+..|+.+++.++|+||+++
T Consensus         1 lg~G~~g~Vy~~~~~~~~~----------------------~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~   58 (280)
T cd05608           1 LGKGGFGEVSACQMRATGK----------------------LYACKKLNKKRLKKRKGYEGAMVEKRILAKVHSRFIVSL   58 (280)
T ss_pred             CCCCCceeEEEEEEccCCc----------------------EEEEEeeeHHHHhhhHHHHHHHHHHHHHHhCCCCcEeee
Confidence            6999999999999887655                      57777664332   2233567789999999999999999


Q ss_pred             hhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeeecCCCCC
Q 024842          111 LDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPG  190 (262)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~dikp~  190 (262)
                      ...+          ......+++|||+.+++|.+.+.........+++..++.++.|++.||.|||+.+  |+||||||+
T Consensus        59 ~~~~----------~~~~~~~lv~e~~~~g~L~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~--i~H~dlkp~  126 (280)
T cd05608          59 AYAF----------QTKTDLCLVMTIMNGGDLRYHIYNVDEENPGFPEPRACFYTAQIISGLEHLHQRR--IIYRDLKPE  126 (280)
T ss_pred             eEEE----------cCCCeEEEEEeCCCCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHCC--cccCCCCHH
Confidence            8877          3456799999999999998877544334556999999999999999999999998  999999999


Q ss_pred             cEEEecCCCCCCceEEeeccceeeccccC-----ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecccCC
Q 024842          191 NILITCRKGQPPLAILMDFGSARPAQSKF-----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMFGR  262 (262)
Q Consensus       191 Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~G~  262 (262)
                      ||+++.++    .++|+|||++.......     ..++..|.+||.+..-.     .....|+||+|+++|+|++|+
T Consensus       127 Nili~~~~----~~~l~dfg~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~-----~~~~~DvwslG~il~el~~g~  194 (280)
T cd05608         127 NVLLDNDG----NVRISDLGLAVELKDGQSKTKGYAGTPGFMAPELLQGEE-----YDFSVDYFALGVTLYEMIAAR  194 (280)
T ss_pred             HEEECCCC----CEEEeeCccceecCCCCccccccCCCcCccCHHHhcCCC-----CCccccHHHHHHHHHHHHhCC
Confidence            99998766    69999999997654332     24556777777553221     112468888888888888774

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g

>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

Probab=99.97  E-value=5.9e-31  Score=219.23  Aligned_cols=184  Identities=23%  Similarity=0.288  Sum_probs=145.3

Q ss_pred             EEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc---chHHHHHHHHHHHHhhhC-CCCCc
Q 024842           32 RQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ---NNEQLEMVREEIRVSSLF-SHRNL  107 (262)
Q Consensus        32 ~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~---~~~~~~~~~~E~~~l~~l-~h~~i  107 (262)
                      +.||+|+||.||+|++..+++                      .+|+|.+...   .....+.+..|..++..+ .||+|
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~----------------------~~aiK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i   58 (327)
T cd05617           1 RVIGRGSYAKVLLVRLKKNDQ----------------------IYAMKVVKKELVHDDEDIDWVQTEKHVFEQASSNPFL   58 (327)
T ss_pred             CeeeeCCCeEEEEEEECCCCC----------------------EEEEEEEEHHHhhhhhHHHHHHHHHHHHHhhcCCCCE
Confidence            369999999999999877655                      5677766543   233446677888888887 69999


Q ss_pred             cchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeeecCC
Q 024842          108 LPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDV  187 (262)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~di  187 (262)
                      +++++++          ......+++|||+.+++|.+++.    ....+++..++.++.|++.||+|||+++  ++||||
T Consensus        59 ~~~~~~~----------~~~~~~~lv~e~~~~~~L~~~~~----~~~~l~~~~~~~~~~qi~~al~~lH~~~--ivHrDl  122 (327)
T cd05617          59 VGLHSCF----------QTTSRLFLVIEYVNGGDLMFHMQ----RQRKLPEEHARFYAAEICIALNFLHERG--IIYRDL  122 (327)
T ss_pred             eeEEEEE----------EeCCEEEEEEeCCCCCcHHHHHH----HcCCCCHHHHHHHHHHHHHHHHHHHHCC--eeccCC
Confidence            9999887          34667999999999999988775    4456999999999999999999999998  999999


Q ss_pred             CCCcEEEecCCCCCCceEEeeccceeeccc-----cCccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecccCC
Q 024842          188 KPGNILITCRKGQPPLAILMDFGSARPAQS-----KFALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMFGR  262 (262)
Q Consensus       188 kp~Nill~~~~~~~~~~kl~Dfg~a~~~~~-----~~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~G~  262 (262)
                      ||+|||++.++    .+||+|||++.....     ....++..|.+||.+....     .....|+||+|+++|+|++|+
T Consensus       123 kp~Nili~~~~----~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-----~~~~~DiwslGvil~ell~g~  193 (327)
T cd05617         123 KLDNVLLDADG----HIKLTDYGMCKEGLGPGDTTSTFCGTPNYIAPEILRGEE-----YGFSVDWWALGVLMFEMMAGR  193 (327)
T ss_pred             CHHHEEEeCCC----CEEEeccccceeccCCCCceecccCCcccCCHHHHCCCC-----CCchheeehhHHHHHHHHhCC
Confidence            99999998776    699999999875321     1134677788887653322     122478888998888888885

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways

>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

Probab=99.97  E-value=7.1e-31  Score=215.40  Aligned_cols=199  Identities=20%  Similarity=0.272  Sum_probs=154.6

Q ss_pred             ecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhC
Q 024842           23 INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLF  102 (262)
Q Consensus        23 ~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l  102 (262)
                      ...+.|++.+.||+|+||.||+|++..+++                      .+++|..........+.+..|+.+++.+
T Consensus         9 ~~~~~y~i~~~lg~g~~g~vy~~~~~~~~~----------------------~~~~k~~~~~~~~~~~~~~~e~~~l~~l   66 (292)
T cd06644           9 DPNEVWEIIGELGDGAFGKVYKAKNKETGA----------------------LAAAKVIETKSEEELEDYMVEIEILATC   66 (292)
T ss_pred             CcchhhhhhheecCCCCeEEEEEEECCCCc----------------------eEEEEEeccCCHHHHHHHHHHHHHHHhC
Confidence            345789999999999999999999876544                      6788877766666677888999999999


Q ss_pred             CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCe
Q 024842          103 SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPY  182 (262)
Q Consensus       103 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~i  182 (262)
                      +|||++++++.+.          .....+++|||+.+++|..++..   ....+++..++.++.|++.+|.|||+.+  +
T Consensus        67 ~h~~i~~~~~~~~----------~~~~~~lv~e~~~~~~l~~~~~~---~~~~l~~~~~~~~~~ql~~~l~~lH~~~--i  131 (292)
T cd06644          67 NHPYIVKLLGAFY----------WDGKLWIMIEFCPGGAVDAIMLE---LDRGLTEPQIQVICRQMLEALQYLHSMK--I  131 (292)
T ss_pred             CCCcEeeeEEEEE----------eCCeEEEEEecCCCCcHHHHHHh---hcCCCCHHHHHHHHHHHHHHHHHHhcCC--e
Confidence            9999999999873          35679999999999999876642   2345899999999999999999999988  9


Q ss_pred             eecCCCCCcEEEecCCCCCCceEEeeccceeecccc-----CccCcccCCcccchhhhhhhhhhhhhcCcccchheehee
Q 024842          183 AHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSK-----FALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRE  257 (262)
Q Consensus       183 vH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~-----~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~  257 (262)
                      +|+||||+||+++.++    .++|+|||++......     ...++..|.+||.+..-...........|+|++|+++|+
T Consensus       132 ~H~dlkp~Nili~~~~----~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slG~il~e  207 (292)
T cd06644         132 IHRDLKAGNVLLTLDG----DIKLADFGVSAKNVKTLQRRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIE  207 (292)
T ss_pred             eecCCCcceEEEcCCC----CEEEccCccceeccccccccceecCCccccCceeeccccccCCCCCchhhhHhHHHHHHH
Confidence            9999999999998766    6999999998754322     123455677776553211111111224678888888888


Q ss_pred             cccCC
Q 024842          258 LMFGR  262 (262)
Q Consensus       258 l~~G~  262 (262)
                      |++|+
T Consensus       208 l~~g~  212 (292)
T cd06644         208 MAQIE  212 (292)
T ss_pred             HhcCC
Confidence            87774

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.

>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

Probab=99.97  E-value=1.2e-30  Score=217.42  Aligned_cols=184  Identities=23%  Similarity=0.266  Sum_probs=143.8

Q ss_pred             EEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc---chHHHHHHHHHHHHhhhC-CCCCc
Q 024842           32 RQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ---NNEQLEMVREEIRVSSLF-SHRNL  107 (262)
Q Consensus        32 ~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~---~~~~~~~~~~E~~~l~~l-~h~~i  107 (262)
                      +.||+|+||.||+|++..+++                      .+|+|.+...   .......+..|+.++..+ +||||
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~----------------------~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~i   58 (329)
T cd05618           1 RVIGRGSYAKVLLVRLKKTER----------------------IYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFL   58 (329)
T ss_pred             CeeeeCCCeEEEEEEECCCCC----------------------EEEEEEEEhhHhcchhHHHHHHHHHHHHHhcCCCCcC
Confidence            369999999999999887655                      5666665432   333445677888887766 79999


Q ss_pred             cchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeeecCC
Q 024842          108 LPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDV  187 (262)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~di  187 (262)
                      +++++++          ......+++|||+.+++|..++.    ....+++..++.++.|++.||.|||+++  ++||||
T Consensus        59 v~~~~~~----------~~~~~~~lv~E~~~~~~L~~~~~----~~~~l~~~~~~~i~~qi~~~l~~lH~~~--ivH~Di  122 (329)
T cd05618          59 VGLHSCF----------QTESRLFFVIEYVNGGDLMFHMQ----RQRKLPEEHARFYSAEISLALNYLHERG--IIYRDL  122 (329)
T ss_pred             CceeeEE----------EeCCEEEEEEeCCCCCCHHHHHH----HcCCCCHHHHHHHHHHHHHHHHHHHHCC--eeeCCC
Confidence            9999987          34678999999999999988765    4456999999999999999999999998  999999


Q ss_pred             CCCcEEEecCCCCCCceEEeeccceeeccc-----cCccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecccCC
Q 024842          188 KPGNILITCRKGQPPLAILMDFGSARPAQS-----KFALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMFGR  262 (262)
Q Consensus       188 kp~Nill~~~~~~~~~~kl~Dfg~a~~~~~-----~~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~G~  262 (262)
                      ||+||+++.++    .+||+|||++.....     ....++..|.+||.+..-.     .....|+||+|+++|+|++|+
T Consensus       123 kp~Nili~~~~----~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-----~~~~~DiwslG~il~el~~g~  193 (329)
T cd05618         123 KLDNVLLDSEG----HIKLTDYGMCKEGLRPGDTTSTFCGTPNYIAPEILRGED-----YGFSVDWWALGVLMFEMMAGR  193 (329)
T ss_pred             CHHHEEECCCC----CEEEeeCCccccccCCCCccccccCCccccCHHHHcCCC-----CCCccceecccHHHHHHhhCC
Confidence            99999998776    699999999875321     1224667777777553221     122478888888888888874

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o

>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

Probab=99.97  E-value=1.1e-30  Score=217.89  Aligned_cols=184  Identities=22%  Similarity=0.271  Sum_probs=144.4

Q ss_pred             EEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc---chHHHHHHHHHHHHhhhC-CCCCc
Q 024842           32 RQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ---NNEQLEMVREEIRVSSLF-SHRNL  107 (262)
Q Consensus        32 ~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~---~~~~~~~~~~E~~~l~~l-~h~~i  107 (262)
                      +.||+|+||.||+|++..+++                      .+|+|.+...   .......+..|..+++.+ +||||
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~----------------------~~aiK~i~~~~~~~~~~~~~~~~e~~il~~~~~hp~I   58 (329)
T cd05588           1 RVIGRGSYAKVLLVELKKTRR----------------------IYAMKVIKKELVNDDEDIDWVQTEKHVFETASNHPFL   58 (329)
T ss_pred             CeEeeCCCeEEEEEEECCCCC----------------------EEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCCC
Confidence            368999999999999887655                      5677766532   233345677899998888 69999


Q ss_pred             cchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeeecCC
Q 024842          108 LPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDV  187 (262)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~di  187 (262)
                      +++++++          ......|++|||+.+++|.+++.    ....+++..++.++.|++.||.|||+++  ++||||
T Consensus        59 v~~~~~~----------~~~~~~~lv~e~~~~g~L~~~~~----~~~~l~~~~~~~~~~qi~~~l~~lH~~~--ivH~dl  122 (329)
T cd05588          59 VGLHSCF----------QTESRLFFVIEFVSGGDLMFHMQ----RQRKLPEEHARFYSAEISLALNFLHERG--IIYRDL  122 (329)
T ss_pred             CceEEEE----------EcCCEEEEEEeCCCCCCHHHHHH----HcCCCCHHHHHHHHHHHHHHHHHHHHCC--eEecCC
Confidence            9999887          34677999999999999988775    4456999999999999999999999998  999999


Q ss_pred             CCCcEEEecCCCCCCceEEeeccceeeccc-----cCccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecccCC
Q 024842          188 KPGNILITCRKGQPPLAILMDFGSARPAQS-----KFALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMFGR  262 (262)
Q Consensus       188 kp~Nill~~~~~~~~~~kl~Dfg~a~~~~~-----~~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~G~  262 (262)
                      ||+||+++.++    .++|+|||++.....     ....++..|.+||.+-.-.     .....|+|++|+++|+|++|+
T Consensus       123 kp~Nili~~~~----~~kL~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-----~~~~~DiwslG~~l~el~~g~  193 (329)
T cd05588         123 KLDNVLLDAEG----HIKLTDYGMCKEGIRPGDTTSTFCGTPNYIAPEILRGED-----YGFSVDWWALGVLMFEMMAGR  193 (329)
T ss_pred             CHHHeEECCCC----CEEECcCccccccccCCCccccccCCccccCHHHHcCCC-----CCCccceechHHHHHHHHHCC
Confidence            99999998766    699999999874221     1124667777777543221     122468888888888888875

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl

>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.97  E-value=5.8e-31  Score=221.88  Aligned_cols=198  Identities=22%  Similarity=0.259  Sum_probs=149.5

Q ss_pred             eeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhc---cchHHHHHHHHHHH
Q 024842           21 VWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLI---QNNEQLEMVREEIR   97 (262)
Q Consensus        21 ~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~---~~~~~~~~~~~E~~   97 (262)
                      ..+..++-.+.++||+|.||+||+|+....+...                  ...||+|....   ........+.+|++
T Consensus       152 Wel~H~~v~l~kkLGeGaFGeV~~G~l~~~~~~~------------------~~~VAvK~~k~~~~~~~~~~~e~m~EAr  213 (474)
T KOG0194|consen  152 WELSHSDIELGKKLGEGAFGEVFKGKLKLKNGFK------------------VVPVAVKTTKGSSELTKEQIKEFMKEAR  213 (474)
T ss_pred             cEEeccCccccceeecccccEEEEEEEEecCCce------------------eeeeEEEeecccccccHHHHHHHHHHHH
Confidence            4455667778899999999999999987654311                  11278887774   34666788999999


Q ss_pred             HhhhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHc
Q 024842           98 VSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHS  177 (262)
Q Consensus        98 ~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~  177 (262)
                      +++.++||||++++++..          ....++++||++.+|+|.+++..   ....++..+...++.+.+.||+|||+
T Consensus       214 vMr~l~H~NVVr~yGVa~----------~~~Pl~ivmEl~~gGsL~~~L~k---~~~~v~~~ek~~~~~~AA~Gl~YLh~  280 (474)
T KOG0194|consen  214 VMRQLNHPNVVRFYGVAV----------LEEPLMLVMELCNGGSLDDYLKK---NKKSLPTLEKLRFCYDAARGLEYLHS  280 (474)
T ss_pred             HHHhCCCCCEEEEEEEEc----------CCCccEEEEEecCCCcHHHHHHh---CCCCCCHHHHHHHHHHHHhHHHHHHH
Confidence            999999999999999874          36679999999999999999873   33359999999999999999999999


Q ss_pred             CCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeecccc-----CccCcccCCcccchhhhhhhhhhhhhcCcccchh
Q 024842          178 LEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSK-----FALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQ  252 (262)
Q Consensus       178 ~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~-----~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g  252 (262)
                      ++  ++||||-++|+|++.++    .+||+|||++..-..-     ...-...|.+||.+-..     -+....|||++|
T Consensus       281 k~--~IHRDIAARNcL~~~~~----~vKISDFGLs~~~~~~~~~~~~~klPirWLAPEtl~~~-----~~s~kTDV~sfG  349 (474)
T KOG0194|consen  281 KN--CIHRDIAARNCLYSKKG----VVKISDFGLSRAGSQYVMKKFLKKLPIRWLAPETLNTG-----IFSFKTDVWSFG  349 (474)
T ss_pred             CC--CcchhHhHHHheecCCC----eEEeCccccccCCcceeeccccccCcceecChhhhccC-----ccccccchhhee
Confidence            99  99999999999998776    5899999998754311     11122345555544322     111235666666


Q ss_pred             eeheeccc
Q 024842          253 ILMRELMF  260 (262)
Q Consensus       253 ~~~~~l~~  260 (262)
                      +++||+++
T Consensus       350 V~~~Eif~  357 (474)
T KOG0194|consen  350 VLLWEIFE  357 (474)
T ss_pred             eeEEeeec
Confidence            66666554

>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

Probab=99.97  E-value=1.9e-30  Score=210.13  Aligned_cols=155  Identities=14%  Similarity=0.220  Sum_probs=128.6

Q ss_pred             ecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc-hHHHHHHHHHHHHhhh
Q 024842           23 INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN-NEQLEMVREEIRVSSL  101 (262)
Q Consensus        23 ~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~-~~~~~~~~~E~~~l~~  101 (262)
                      ++.++|++.+.||+|+||.||+|.+...+.                   ....+++|...... ......+.+|+..++.
T Consensus         2 i~~~~~~~~~~ig~G~fg~V~~~~~~~~~~-------------------~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~   62 (266)
T cd05064           2 LDNKSIKIERILGTGRFGELCRGCLKLPSK-------------------RELPVAIHTLRAGCSDKQRRGFLAEALTLGQ   62 (266)
T ss_pred             CchHHeEEeeeecccCCCeEEEEEEecCCC-------------------ceeeEEEEecCCCCCHHHHHHHHHHHHHHhc
Confidence            456789999999999999999998754322                   23467888776543 3334678899999999


Q ss_pred             CCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCC
Q 024842          102 FSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPP  181 (262)
Q Consensus       102 l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~  181 (262)
                      ++||||+++++.+.          .....+++|||+.+++|.+++..   ....+++..++.++.|++.||+|||+++  
T Consensus        63 l~h~~iv~~~~~~~----------~~~~~~lv~e~~~~~~L~~~l~~---~~~~l~~~~~~~~~~~i~~al~~lH~~~--  127 (266)
T cd05064          63 FDHSNIVRLEGVIT----------RGNTMMIVTEYMSNGALDSFLRK---HEGQLVAGQLMGMLPGLASGMKYLSEMG--  127 (266)
T ss_pred             CCCCCcCeEEEEEe----------cCCCcEEEEEeCCCCcHHHHHHh---CCCCCCHHHHHHHHHHHHHHHHHHHHCC--
Confidence            99999999998873          35678999999999999988762   2346899999999999999999999988  


Q ss_pred             eeecCCCCCcEEEecCCCCCCceEEeeccceeec
Q 024842          182 YAHNDVKPGNILITCRKGQPPLAILMDFGSARPA  215 (262)
Q Consensus       182 ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~  215 (262)
                      ++||||||+||+++.++    .++++|||.+...
T Consensus       128 iiH~dikp~nili~~~~----~~~l~dfg~~~~~  157 (266)
T cd05064         128 YVHKGLAAHKVLVNSDL----VCKISGFRRLQED  157 (266)
T ss_pred             EeeccccHhhEEEcCCC----cEEECCCcccccc
Confidence            99999999999998766    6999999987643

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor

>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

Probab=99.97  E-value=7.1e-31  Score=217.15  Aligned_cols=192  Identities=25%  Similarity=0.292  Sum_probs=146.2

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc-hHHHHHHHHHHHHhhhCC
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN-NEQLEMVREEIRVSSLFS  103 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~-~~~~~~~~~E~~~l~~l~  103 (262)
                      .++|.+.+.||+|+||.||+|++..+++                      .+++|.+.... ......+.+|+.+++.++
T Consensus         5 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~----------------------~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~   62 (309)
T cd07872           5 METYIKLEKLGEGTYATVFKGRSKLTEN----------------------LVALKEIRLEHEEGAPCTAIREVSLLKDLK   62 (309)
T ss_pred             CCceEEEEEecccCCEEEEEEEecCCCC----------------------eEEEEEeeccccCCcchhHHHHHHHHHhCC
Confidence            4679999999999999999999876654                      56777654332 222345678999999999


Q ss_pred             CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCee
Q 024842          104 HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYA  183 (262)
Q Consensus       104 h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~iv  183 (262)
                      ||||+++++.+          ...+..+++|||+.+ +|.+++..   ....+++..++.++.|++.||.|||+++  |+
T Consensus        63 h~~iv~~~~~~----------~~~~~~~lv~e~~~~-~l~~~~~~---~~~~~~~~~~~~~~~qi~~aL~~lH~~~--iv  126 (309)
T cd07872          63 HANIVTLHDIV----------HTDKSLTLVFEYLDK-DLKQYMDD---CGNIMSMHNVKIFLYQILRGLAYCHRRK--VL  126 (309)
T ss_pred             CCCcceEEEEE----------eeCCeEEEEEeCCCC-CHHHHHHh---cCCCCCHHHHHHHHHHHHHHHHHHHHCC--ee
Confidence            99999999987          335678999999874 77766542   3345889999999999999999999998  99


Q ss_pred             ecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-----ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheec
Q 024842          184 HNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMREL  258 (262)
Q Consensus       184 H~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l  258 (262)
                      ||||||+||+++.++    .++|+|||++.......     ..++..|.+||.+....    ......|+|++|+++++|
T Consensus       127 H~dlkp~Nill~~~~----~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~----~~~~~~DiwslG~il~el  198 (309)
T cd07872         127 HRDLKPQNLLINERG----ELKLADFGLARAKSVPTKTYSNEVVTLWYRPPDVLLGSS----EYSTQIDMWGVGCIFFEM  198 (309)
T ss_pred             cCCCCHHHEEECCCC----CEEECccccceecCCCccccccccccccccCCHHHhCCC----CCCcHHHHHHHHHHHHHH
Confidence            999999999998766    69999999987643221     23455677776553211    111236888888888888


Q ss_pred             ccCC
Q 024842          259 MFGR  262 (262)
Q Consensus       259 ~~G~  262 (262)
                      ++|+
T Consensus       199 ~tg~  202 (309)
T cd07872         199 ASGR  202 (309)
T ss_pred             HhCC
Confidence            8874

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play

>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

Probab=99.97  E-value=1.1e-30  Score=219.07  Aligned_cols=201  Identities=26%  Similarity=0.351  Sum_probs=150.4

Q ss_pred             ceeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc--chHHHHHHHHHHH
Q 024842           20 DVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ--NNEQLEMVREEIR   97 (262)
Q Consensus        20 ~~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~--~~~~~~~~~~E~~   97 (262)
                      ..|-..++|++.+.||+|+||.||+|.+..+++                      .||+|++...  .....+.+.+|+.
T Consensus         9 ~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~----------------------~vavK~~~~~~~~~~~~~~~~~E~~   66 (343)
T cd07878           9 TVWEVPERYQNLTPVGSGAYGSVCSAYDTRLRQ----------------------KVAVKKLSRPFQSLIHARRTYRELR   66 (343)
T ss_pred             HHhhhhhhhhhheecccCCCeEEEEEEECCCCC----------------------EEEEEEeCchhhhhHHHHHHHHHHH
Confidence            344456799999999999999999999876654                      5777766543  2223456778999


Q ss_pred             HhhhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHc
Q 024842           98 VSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHS  177 (262)
Q Consensus        98 ~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~  177 (262)
                      +++.++||||+++++++...    .........+++++++ +++|.+++.     ...+++..++.++.|++.||.|||+
T Consensus        67 ~l~~l~h~~iv~~~~~~~~~----~~~~~~~~~~~~~~~~-~~~l~~~~~-----~~~l~~~~~~~i~~qi~~aL~~LH~  136 (343)
T cd07878          67 LLKHMKHENVIGLLDVFTPA----TSIENFNEVYLVTNLM-GADLNNIVK-----CQKLSDEHVQFLIYQLLRGLKYIHS  136 (343)
T ss_pred             HHHhcCCCchhhhhhhhccc----ccccccCcEEEEeecC-CCCHHHHHh-----cCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999887421    0112234567888865 778877663     3459999999999999999999999


Q ss_pred             CCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC--ccCcccCCcccchhhhhhhhhhhhhcCcccchheeh
Q 024842          178 LEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF--ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILM  255 (262)
Q Consensus       178 ~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~--~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~  255 (262)
                      .+  |+||||||+||+++.++    .+||+|||++.......  ..++..|.+||.+....    ......|+||+|+++
T Consensus       137 ~~--ivHrdikp~Nil~~~~~----~~kl~Dfg~~~~~~~~~~~~~~t~~y~aPE~~~~~~----~~~~~~DiwslG~il  206 (343)
T cd07878         137 AG--IIHRDLKPSNVAVNEDC----ELRILDFGLARQADDEMTGYVATRWYRAPEIMLNWM----HYNQTVDIWSVGCIM  206 (343)
T ss_pred             CC--eecccCChhhEEECCCC----CEEEcCCccceecCCCcCCccccccccCchHhcCCc----cCCchhhhHhHHHHH
Confidence            98  99999999999998776    69999999998765432  24566777777553211    112246888888888


Q ss_pred             eecccCC
Q 024842          256 RELMFGR  262 (262)
Q Consensus       256 ~~l~~G~  262 (262)
                      |+|++|+
T Consensus       207 ~el~~g~  213 (343)
T cd07878         207 AELLKGK  213 (343)
T ss_pred             HHHHHCC
Confidence            8887774

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is

>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

Probab=99.97  E-value=1.9e-30  Score=215.93  Aligned_cols=184  Identities=21%  Similarity=0.283  Sum_probs=143.5

Q ss_pred             EEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc---chHHHHHHHHHHH-HhhhCCCCCc
Q 024842           32 RQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ---NNEQLEMVREEIR-VSSLFSHRNL  107 (262)
Q Consensus        32 ~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~---~~~~~~~~~~E~~-~l~~l~h~~i  107 (262)
                      +.||+|+||.||+|++..+++                      .+++|++...   .......+..|.. +++.++||||
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~----------------------~vaiK~~~~~~~~~~~~~~~~~~e~~~~~~~l~hp~i   58 (323)
T cd05575           1 KVIGKGSFGKVLLAKHKADGK----------------------FYAVKVLQKKAILKKKEQKHIMAERNVLLKNVKHPFL   58 (323)
T ss_pred             CeeeeCCCeEEEEEEECCCCC----------------------EEEEEEEEHHHHhhhhHHHHHHHHHHHHHhhCCCCCC
Confidence            369999999999999887655                      5777766432   1222334444544 5678999999


Q ss_pred             cchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeeecCC
Q 024842          108 LPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDV  187 (262)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~di  187 (262)
                      +++++.+          ......+++|||+.+++|.+++.    ....+++..++.++.||+.||.|||+++  |+||||
T Consensus        59 v~~~~~~----------~~~~~~~lv~e~~~~g~L~~~l~----~~~~~~~~~~~~~~~qi~~~l~~lH~~g--ivH~di  122 (323)
T cd05575          59 VGLHYSF----------QTADKLYFVLDYVNGGELFFHLQ----RERSFPEPRARFYAAEIASALGYLHSLN--IIYRDL  122 (323)
T ss_pred             CCeeEEE----------EeCCEEEEEEcCCCCCCHHHHHH----hcCCCCHHHHHHHHHHHHHHHHHHHHCC--eEeCCC
Confidence            9999877          33667899999999999988876    4456999999999999999999999998  999999


Q ss_pred             CCCcEEEecCCCCCCceEEeeccceeecccc-----CccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecccCC
Q 024842          188 KPGNILITCRKGQPPLAILMDFGSARPAQSK-----FALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMFGR  262 (262)
Q Consensus       188 kp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~-----~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~G~  262 (262)
                      ||+|||++.++    .+||+|||++......     ...++..|.+||.+....     .....|+|++|+++|+|++|+
T Consensus       123 kp~NIll~~~~----~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-----~~~~~DvwslG~il~ell~g~  193 (323)
T cd05575         123 KPENILLDSQG----HVVLTDFGLCKEGIEHSKTTSTFCGTPEYLAPEVLRKQP-----YDRTVDWWCLGAVLYEMLYGL  193 (323)
T ss_pred             CHHHeEECCCC----cEEEeccCCCcccccCCCccccccCChhhcChhhhcCCC-----CCccccccccchhhhhhhcCC
Confidence            99999998776    6999999998753221     124677888888654322     223579999999999999985

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr

>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

Probab=99.97  E-value=1.6e-30  Score=216.21  Aligned_cols=184  Identities=21%  Similarity=0.256  Sum_probs=144.1

Q ss_pred             EEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc---chHHHHHHHHHHHHhhhC-CCCCc
Q 024842           32 RQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ---NNEQLEMVREEIRVSSLF-SHRNL  107 (262)
Q Consensus        32 ~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~---~~~~~~~~~~E~~~l~~l-~h~~i  107 (262)
                      +.||+|+||.||+|++..+++                      .+|+|.+...   .....+.+..|..+++.+ +||||
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~----------------------~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~hp~i   58 (321)
T cd05591           1 KVLGKGSFGKVMLAELKGTDE----------------------VYAIKVLKKDVILQDDDVDCTMTEKRILALAAKHPFL   58 (321)
T ss_pred             CccccCCCeEEEEEEECCCCC----------------------EEEEEEEeHHHhhhhhHHHHHHHHHHHHHhccCCCCc
Confidence            368999999999999876655                      5677765433   223345566788888765 79999


Q ss_pred             cchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeeecCC
Q 024842          108 LPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDV  187 (262)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~di  187 (262)
                      +++++.+          ......|++|||+.+++|.+.+.    ....+++..++.++.|++.||.|||+.+  ++||||
T Consensus        59 ~~~~~~~----------~~~~~~~lv~E~~~~~~L~~~l~----~~~~~~~~~~~~~~~qi~~aL~~LH~~~--ivHrDi  122 (321)
T cd05591          59 TALHCCF----------QTKDRLFFVMEYVNGGDLMFQIQ----RSRKFDEPRSRFYAAEVTLALMFLHRHG--VIYRDL  122 (321)
T ss_pred             cceeeEE----------EcCCeEEEEEeCCCCCcHHHHHH----HcCCCCHHHHHHHHHHHHHHHHHHHHCC--eeccCC
Confidence            9999987          34667999999999999988775    3455899999999999999999999998  999999


Q ss_pred             CCCcEEEecCCCCCCceEEeeccceeeccccC-----ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecccCC
Q 024842          188 KPGNILITCRKGQPPLAILMDFGSARPAQSKF-----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMFGR  262 (262)
Q Consensus       188 kp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~G~  262 (262)
                      ||+||+++.++    .++|+|||++.......     ..++..|.+||.+....     .....|+||+|+++|+|++|+
T Consensus       123 kp~Nill~~~~----~~kL~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-----~~~~~DvwslG~il~el~tg~  193 (321)
T cd05591         123 KLDNILLDAEG----HCKLADFGMCKEGILNGVTTTTFCGTPDYIAPEILQELE-----YGPSVDWWALGVLMYEMMAGQ  193 (321)
T ss_pred             CHHHeEECCCC----CEEEeecccceecccCCccccccccCccccCHHHHcCCC-----CCCccceechhHHHHHHhcCC
Confidence            99999998776    69999999987543221     23667788877553221     123478999999999999885

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to

>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

Probab=99.97  E-value=2.1e-30  Score=209.83  Aligned_cols=194  Identities=25%  Similarity=0.363  Sum_probs=150.0

Q ss_pred             CceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhc---cchHHHHHHHHHHHHhhhC
Q 024842           26 NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLI---QNNEQLEMVREEIRVSSLF  102 (262)
Q Consensus        26 ~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~---~~~~~~~~~~~E~~~l~~l  102 (262)
                      ++|++.+.||+|+||.||+|++..+++                      .+++|.+..   ........+.+|+.+++.+
T Consensus         2 ~~~~i~~~l~~g~~~~v~~~~~~~~~~----------------------~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l   59 (267)
T cd08228           2 ANFQIEKKIGRGQFSEVYRATCLLDRK----------------------PVALKKVQIFEMMDAKARQDCVKEIDLLKQL   59 (267)
T ss_pred             cceeeeeeeccCCCeeEEEEEEeCCCC----------------------EEEEEEeeccccCCHHHHHHHHHHHHHHHhC
Confidence            579999999999999999999877655                      567765432   2334456788899999999


Q ss_pred             CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCe
Q 024842          103 SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPY  182 (262)
Q Consensus       103 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~i  182 (262)
                      +|||++++++.+.          ..+..++++||+.+++|.+++.........+++..++.++.|++.||.|||+++  +
T Consensus        60 ~h~~i~~~~~~~~----------~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~--i  127 (267)
T cd08228          60 NHPNVIKYLDSFI----------EDNELNIVLELADAGDLSQMIKYFKKQKRLIPERTVWKYFVQLCSAVEHMHSRR--V  127 (267)
T ss_pred             CCcceeeeeeeEE----------ECCeEEEEEEecCCCcHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHhhCC--e
Confidence            9999999998873          356789999999999999988765555566899999999999999999999998  9


Q ss_pred             eecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-----ccCcccCCcccchhhhhhhhhhhhhcCcccchheehee
Q 024842          183 AHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRE  257 (262)
Q Consensus       183 vH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~  257 (262)
                      +|+||+|+||+++.++    .++|+|||++.......     ..++..|.+||.+..-+     .....|+|++|+++++
T Consensus       128 ~H~dl~~~nil~~~~~----~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~-----~~~~~Di~slG~~l~e  198 (267)
T cd08228         128 MHRDIKPANVFITATG----VVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPERIHENG-----YNFKSDIWSLGCLLYE  198 (267)
T ss_pred             eCCCCCHHHEEEcCCC----CEEECccccceeccchhHHHhcCCCCccccChhhhccCC-----CCchhhHHHHHHHHHH
Confidence            9999999999998766    69999999988765322     23445566666432211     1123566666666666


Q ss_pred             cccCC
Q 024842          258 LMFGR  262 (262)
Q Consensus       258 l~~G~  262 (262)
                      |++|+
T Consensus       199 l~~g~  203 (267)
T cd08228         199 MAALQ  203 (267)
T ss_pred             HhcCC
Confidence            66653

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase

>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

Probab=99.97  E-value=2.8e-30  Score=218.77  Aligned_cols=202  Identities=19%  Similarity=0.238  Sum_probs=148.8

Q ss_pred             eeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc-chHHHHHHHHHHHHh
Q 024842           21 VWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ-NNEQLEMVREEIRVS   99 (262)
Q Consensus        21 ~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~-~~~~~~~~~~E~~~l   99 (262)
                      +.++.++|++.+.||+|+||.||+|++...+..                 .+...||+|.+... .....+.+.+|+.++
T Consensus        33 ~~~~~~~~~~~~~LG~G~fg~V~~~~~~~~~~~-----------------~~~~~vavK~~~~~~~~~~~~~~~~E~~il   95 (374)
T cd05106          33 WEFPRDNLQFGKTLGAGAFGKVVEATAFGLGKE-----------------DNVLRVAVKMLKASAHTDEREALMSELKIL   95 (374)
T ss_pred             ccccHHHceehheecCCCcccEEEEEEecCCcc-----------------cccceeEEEeccCCCCHHHHHHHHHHHHHH
Confidence            345677899999999999999999997654432                 12346888887654 233456788999999


Q ss_pred             hhC-CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhh---------------------------
Q 024842          100 SLF-SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQT---------------------------  151 (262)
Q Consensus       100 ~~l-~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~---------------------------  151 (262)
                      +.+ +|+||+++++.+          ...+..+++|||+.+++|.+++.....                           
T Consensus        96 ~~l~~h~nIv~~~~~~----------~~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (374)
T cd05106          96 SHLGQHKNIVNLLGAC----------THGGPVLVITEYCCYGDLLNFLRKKAETFLNFVMALPEISETSSDYKNITLEKK  165 (374)
T ss_pred             HhhccCCceeeEeeEe----------cCCCCeEEeHhhccCCcHHHHHHhhhhhhccccccccccccccccccccchhcc
Confidence            999 899999999987          335678999999999999998753211                           


Q ss_pred             ---------------------------------------cCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeeecCCCCCcE
Q 024842          152 ---------------------------------------KKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNI  192 (262)
Q Consensus       152 ---------------------------------------~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~dikp~Ni  192 (262)
                                                             ...++++..++.++.|++.||.|||+++  ++||||||+||
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~yLH~~g--iiHrDLkp~Ni  243 (374)
T cd05106         166 YIRSDSGFSSQGSDTYVEMRPVSSSSSQSSDSKDEEDTEDSWPLDLDDLLRFSSQVAQGMDFLASKN--CIHRDVAARNV  243 (374)
T ss_pred             cccccccccccccccccccCCccccccccccccchhccCCCCCcCHHHHHHHHHHHHHHHHHHHHCC--EEeccCchheE
Confidence                                                   1124788899999999999999999988  99999999999


Q ss_pred             EEecCCCCCCceEEeeccceeeccccCc-------cCcccCCcccchhhhhhhhhhhhhcCcccchheeheeccc
Q 024842          193 LITCRKGQPPLAILMDFGSARPAQSKFA-------LGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMF  260 (262)
Q Consensus       193 ll~~~~~~~~~~kl~Dfg~a~~~~~~~~-------~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~  260 (262)
                      |++.++    .++|+|||++........       .++..|++||.+..-     ......|+||+|+++|+|++
T Consensus       244 l~~~~~----~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-----~~~~~~DvwSlGvil~ellt  309 (374)
T cd05106         244 LLTDGR----VAKICDFGLARDIMNDSNYVVKGNARLPVKWMAPESIFDC-----VYTVQSDVWSYGILLWEIFS  309 (374)
T ss_pred             EEeCCC----eEEEeeceeeeeccCCcceeeccCCCCccceeCHHHhcCC-----CCCccccHHHHHHHHHHHHh
Confidence            998665    699999999976533211       122346666643221     11223556666666666554

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti

>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=1.5e-30  Score=217.09  Aligned_cols=183  Identities=22%  Similarity=0.288  Sum_probs=141.3

Q ss_pred             eecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc---hHHHHHHHHHHHHhhhC---CCCCc
Q 024842           34 LGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN---NEQLEMVREEIRVSSLF---SHRNL  107 (262)
Q Consensus        34 ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~---~~~~~~~~~E~~~l~~l---~h~~i  107 (262)
                      ||+|+||.||+|++..+++                      .+|+|.+....   .........|..++...   .||||
T Consensus         1 lG~G~~g~Vy~~~~~~~~~----------------------~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~p~i   58 (330)
T cd05586           1 IGKGTFGQVYQVRKKDTRR----------------------IYAMKVLSKKEIVAKKEVAHTIGERNILVRTLLDESPFI   58 (330)
T ss_pred             CCCCCceEEEEEEECCCCC----------------------EEEEEEEeHHHHhhhhHHHHHHHHHHHHHHhccCCCCcC
Confidence            6999999999999887655                      56666654321   12223344566665544   69999


Q ss_pred             cchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeeecCC
Q 024842          108 LPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDV  187 (262)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~di  187 (262)
                      ++++..+          ......|++|||+.+++|.+++.    ....+++..++.++.|++.||+|||+++  |+||||
T Consensus        59 ~~~~~~~----------~~~~~~~lv~e~~~~g~L~~~l~----~~~~~~~~~~~~~~~qil~al~~LH~~~--ivHrDl  122 (330)
T cd05586          59 VGLKFSF----------QTDSDLYLVTDYMSGGELFWHLQ----KEGRFSEDRAKFYIAELVLALEHLHKYD--IVYRDL  122 (330)
T ss_pred             cceEEEE----------ecCCeEEEEEcCCCCChHHHHHH----hcCCCCHHHHHHHHHHHHHHHHHHHHCC--eEeccC
Confidence            9999887          34677999999999999988775    4556999999999999999999999999  999999


Q ss_pred             CCCcEEEecCCCCCCceEEeeccceeecccc-----CccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecccCC
Q 024842          188 KPGNILITCRKGQPPLAILMDFGSARPAQSK-----FALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMFGR  262 (262)
Q Consensus       188 kp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~-----~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~G~  262 (262)
                      ||+|||++.++    .++|+|||++......     ...++..|.+||.+..-.    ......|+|++|+++|+|++|+
T Consensus       123 kp~Nili~~~~----~~kl~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~----~~~~~~DvwslGvil~elltG~  194 (330)
T cd05586         123 KPENILLDATG----HIALCDFGLSKANLTDNKTTNTFCGTTEYLAPEVLLDEK----GYTKHVDFWSLGVLVFEMCCGW  194 (330)
T ss_pred             CHHHeEECCCC----CEEEecCCcCcCCCCCCCCccCccCCccccCHHHHcCCC----CCCCccceeccccEEEEeccCC
Confidence            99999998776    6999999998753221     234677888888663211    1223579999999999999985

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of

>KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.97  E-value=8.7e-31  Score=205.44  Aligned_cols=196  Identities=22%  Similarity=0.308  Sum_probs=158.4

Q ss_pred             eEE-EEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCC-CC
Q 024842           28 YRI-LRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFS-HR  105 (262)
Q Consensus        28 y~~-~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~-h~  105 (262)
                      |++ .+.||+|.++.|-.+....++.                      +||+|++.........+..+|++++...+ |+
T Consensus        79 YkLt~e~LGeGAyasVqtcv~i~t~~----------------------EYAVKiidKq~gHsR~RvfREVe~f~~Cqgh~  136 (463)
T KOG0607|consen   79 YKLTSELLGEGAYASVQTCVSIQTGK----------------------EYAVKIIDKQPGHSRSRVFREVETFYQCQGHK  136 (463)
T ss_pred             HHhHHHHhcCccceeeeeeeeeccch----------------------hhhhhhhhcCCchHHHHHHHHHHHHHHhcCCc
Confidence            444 3568999999999999887755                      79999998888888889999999999885 99


Q ss_pred             CccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeeec
Q 024842          106 NLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHN  185 (262)
Q Consensus       106 ~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~  185 (262)
                      ||++++++|          ++..++|+|||-+.+|+|...+.    ....|++.++.++...|+.||.|||.+|  |.||
T Consensus       137 nilqLiefF----------Edd~~FYLVfEKm~GGplLshI~----~~~~F~E~EAs~vvkdia~aLdFlH~kg--IAHR  200 (463)
T KOG0607|consen  137 NILQLIEFF----------EDDTRFYLVFEKMRGGPLLSHIQ----KRKHFNEREASRVVKDIASALDFLHTKG--IAHR  200 (463)
T ss_pred             cHHHHHHHh----------cccceEEEEEecccCchHHHHHH----HhhhccHHHHHHHHHHHHHHHHHHhhcC--cccc
Confidence            999999998          66788999999999999999887    5667999999999999999999999999  9999


Q ss_pred             CCCCCcEEEecCCCCCCceEEeeccceeeccc---------cC---ccCcccCCcccchhhhhhhhhhhhhcCcccchhe
Q 024842          186 DVKPGNILITCRKGQPPLAILMDFGSARPAQS---------KF---ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQI  253 (262)
Q Consensus       186 dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~---------~~---~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~  253 (262)
                      |+||+|||-...+.- .-+||+||.++..+.-         +.   ..|+..|++||-+-.+---...+-.+-|.||+|+
T Consensus       201 DlKPENiLC~~pn~v-sPvKiCDfDLgSg~k~~~~~spastP~L~tPvGSAEfMAPEVVd~fv~qA~~YDKrCDlwSLGv  279 (463)
T KOG0607|consen  201 DLKPENILCESPNKV-SPVKICDFDLGSGIKLNNDCSPASTPELLTPVGSAEFMAPEVVDVFVDQATFYDKRCDLWSLGV  279 (463)
T ss_pred             cCCccceeecCCCCc-CceeeeccccccccccCCCCCCCCCccccCcccchhhcchhHHhhhccccccccccccHHHHHH
Confidence            999999999765432 2489999988775431         11   1466677887765443322333334578999999


Q ss_pred             eheecccCC
Q 024842          254 LMRELMFGR  262 (262)
Q Consensus       254 ~~~~l~~G~  262 (262)
                      ++|-|++|.
T Consensus       280 IlYImLsGY  288 (463)
T KOG0607|consen  280 ILYIMLSGY  288 (463)
T ss_pred             HHHHHHhCC
Confidence            999888873

>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

Probab=99.97  E-value=1.7e-30  Score=219.20  Aligned_cols=195  Identities=24%  Similarity=0.339  Sum_probs=148.1

Q ss_pred             cCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc--chHHHHHHHHHHHHhhh
Q 024842           24 NENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ--NNEQLEMVREEIRVSSL  101 (262)
Q Consensus        24 ~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~--~~~~~~~~~~E~~~l~~  101 (262)
                      ..++|++.+.||+|+||.||++.+..+++                      .+|+|++...  .......+.+|+.+++.
T Consensus        19 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~----------------------~vavK~~~~~~~~~~~~~~~~~E~~~l~~   76 (359)
T cd07876          19 VLKRYQQLKPIGSGAQGIVCAAFDTVLGI----------------------NVAVKKLSRPFQNQTHAKRAYRELVLLKC   76 (359)
T ss_pred             hhhceEEEEEeecCCCEEEEEEEEcCCCc----------------------eeEEEEecccccchhHHHHHHHHHHHHHh
Confidence            35789999999999999999999877655                      6777766433  33445677889999999


Q ss_pred             CCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCC
Q 024842          102 FSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPP  181 (262)
Q Consensus       102 l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~  181 (262)
                      ++||||+++++++...    .........|++|||+.+ ++.+.+.      ..+++..++.++.|++.||.|||+.+  
T Consensus        77 l~h~niv~~~~~~~~~----~~~~~~~~~~lv~e~~~~-~l~~~~~------~~~~~~~~~~~~~qi~~~L~~LH~~~--  143 (359)
T cd07876          77 VNHKNIISLLNVFTPQ----KSLEEFQDVYLVMELMDA-NLCQVIH------MELDHERMSYLLYQMLCGIKHLHSAG--  143 (359)
T ss_pred             CCCCCEeeeeeeeccC----CCccccceeEEEEeCCCc-CHHHHHh------ccCCHHHHHHHHHHHHHHHHHHHhCC--
Confidence            9999999999887310    000122457999998865 5555442      23788999999999999999999998  


Q ss_pred             eeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC----ccCcccCCcccchhhhhhhhhhhhhcCcccchheehee
Q 024842          182 YAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRE  257 (262)
Q Consensus       182 ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~  257 (262)
                      |+||||||+||+++.++    .+||+|||++.......    ..++..|.+||.+....     .....|+||+|+++|+
T Consensus       144 ivHrDlkp~NIl~~~~~----~~kl~Dfg~a~~~~~~~~~~~~~~t~~y~aPE~~~~~~-----~~~~~DiwSlG~il~e  214 (359)
T cd07876         144 IIHRDLKPSNIVVKSDC----TLKILDFGLARTACTNFMMTPYVVTRYYRAPEVILGMG-----YKENVDIWSVGCIMGE  214 (359)
T ss_pred             cccCCCCHHHEEECCCC----CEEEecCCCccccccCccCCCCcccCCCCCchhccCCC-----CCcchhhHHHHHHHHH
Confidence            99999999999998776    69999999997643322    24566788887664322     2234688888888888


Q ss_pred             cccCC
Q 024842          258 LMFGR  262 (262)
Q Consensus       258 l~~G~  262 (262)
                      |++|+
T Consensus       215 l~tg~  219 (359)
T cd07876         215 LVKGS  219 (359)
T ss_pred             HHhCC
Confidence            88874

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

Probab=99.97  E-value=2.2e-30  Score=215.70  Aligned_cols=184  Identities=20%  Similarity=0.273  Sum_probs=141.9

Q ss_pred             EEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc---hHHHHHHHHHH-HHhhhCCCCCc
Q 024842           32 RQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN---NEQLEMVREEI-RVSSLFSHRNL  107 (262)
Q Consensus        32 ~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~---~~~~~~~~~E~-~~l~~l~h~~i  107 (262)
                      +.||+|+||.||+|++..+++                      .+|+|.+....   ......+..|. .+++.++||||
T Consensus         1 ~~lg~G~fg~V~~~~~~~~~~----------------------~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~I   58 (325)
T cd05602           1 KVIGKGSFGKVLLARHKAEEK----------------------FYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFL   58 (325)
T ss_pred             CeeeeCCCeEEEEEEECCCCC----------------------EEEEEEEEHHHHHhhhHHHHHHHHHHHHHHhCCCCCC
Confidence            369999999999999876654                      56777654321   12223333443 45678899999


Q ss_pred             cchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeeecCC
Q 024842          108 LPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDV  187 (262)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~di  187 (262)
                      ++++..+          ...+..+++|||+.+++|.+++.    ....+++..++.++.|++.||.|||+.+  |+||||
T Consensus        59 v~~~~~~----------~~~~~~~lv~e~~~~~~L~~~~~----~~~~~~~~~~~~~~~qi~~~L~~lH~~g--iiHrDl  122 (325)
T cd05602          59 VGLHFSF----------QTADKLYFVLDYINGGELFYHLQ----RERCFLEPRARFYAAEIASALGYLHSLN--IVYRDL  122 (325)
T ss_pred             CceeEEE----------EcCCeEEEEEeCCCCCcHHHHHH----hcCCCCHHHHHHHHHHHHHHHHHHHHCC--eEecCC
Confidence            9999887          34677999999999999998876    4456889999999999999999999999  999999


Q ss_pred             CCCcEEEecCCCCCCceEEeeccceeeccc-----cCccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecccCC
Q 024842          188 KPGNILITCRKGQPPLAILMDFGSARPAQS-----KFALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMFGR  262 (262)
Q Consensus       188 kp~Nill~~~~~~~~~~kl~Dfg~a~~~~~-----~~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~G~  262 (262)
                      ||+|||++.++    .++|+|||++.....     ....++..|.+||.+....     .....|+||+|+++|+|++|+
T Consensus       123 kp~Nili~~~~----~~kl~DfG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-----~~~~~DiwslG~il~el~~g~  193 (325)
T cd05602         123 KPENILLDSQG----HIVLTDFGLCKENIEHNGTTSTFCGTPEYLAPEVLHKQP-----YDRTVDWWCLGAVLYEMLYGL  193 (325)
T ss_pred             CHHHeEECCCC----CEEEccCCCCcccccCCCCcccccCCccccCHHHHcCCC-----CCCccccccccHHHHHHhcCC
Confidence            99999998766    699999999875322     1234677888888654321     223579999999999999885

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt

>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

Probab=99.97  E-value=8.8e-31  Score=218.95  Aligned_cols=193  Identities=20%  Similarity=0.256  Sum_probs=145.0

Q ss_pred             ecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc-hHHHHHHHHHHHHhhh
Q 024842           23 INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN-NEQLEMVREEIRVSSL  101 (262)
Q Consensus        23 ~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~-~~~~~~~~~E~~~l~~  101 (262)
                      +..++|++.+.||+|+||.||+|.+..++..                 ..++.|++|++.... ....+.+..|+.+++.
T Consensus         4 ~~~~~~~i~~~lG~G~fg~Vy~a~~~~~~~~-----------------~~~~~va~K~~~~~~~~~~~~~~~~E~~~~~~   66 (337)
T cd05054           4 FPRDRLKLGKPLGRGAFGKVIQASAFGIEKS-----------------ASCRTVAVKMLKEGATASEYKALMTELKILIH   66 (337)
T ss_pred             cCHHHhhhhcccccCcCceEEeccccccccc-----------------cccceeeeeeccCCCCHHHHHHHHHHHHHHHh
Confidence            4567999999999999999999986544321                 123478888876442 3334667889999999


Q ss_pred             C-CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhc----------------------------
Q 024842          102 F-SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTK----------------------------  152 (262)
Q Consensus       102 l-~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~----------------------------  152 (262)
                      + +|+||+++++++.         ......+++|+|+.+++|.+++......                            
T Consensus        67 l~~h~niv~~~~~~~---------~~~~~~~~v~ey~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (337)
T cd05054          67 IGHHLNVVNLLGACT---------KPGGPLMVIVEYCKFGNLSNYLRSKRECFSPYRNKSTRKREMKQKEGKKQRLDSVS  137 (337)
T ss_pred             hccCcchhheeeeEe---------cCCCCEEEEEecCCCCCHHHHHHhccccccccccccccccccccccccccccccCC
Confidence            9 7999999998763         2345688999999999999888542210                            


Q ss_pred             -----------------------------CCCCCHHHHHHHHHHHHHHHHHHHcCCCCeeecCCCCCcEEEecCCCCCCc
Q 024842          153 -----------------------------KEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPL  203 (262)
Q Consensus       153 -----------------------------~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~dikp~Nill~~~~~~~~~  203 (262)
                                                   ...+++..+..++.|++.||.|||+++  |+||||||+||+++.++    .
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~~--ivHrDikp~Nill~~~~----~  211 (337)
T cd05054         138 SSQSSASSGFIEDKSLSDVEEDEEGDELYKEPLTLEDLISYSFQVARGMEFLASRK--CIHRDLAARNILLSENN----V  211 (337)
T ss_pred             ccccccccccccCcchhhcccchhhhHHhhcCCCHHHHHHHHHHHHHHHHHHHhCC--eecCCCCcceEEEeCCC----c
Confidence                                         135889999999999999999999988  99999999999998766    6


Q ss_pred             eEEeeccceeeccccC-------ccCcccCCccc-----------chhhhhhhhhhhhhcCc
Q 024842          204 AILMDFGSARPAQSKF-------ALGQRRYSCRN-----------GLLSIVLHLSELLSCGT  247 (262)
Q Consensus       204 ~kl~Dfg~a~~~~~~~-------~~~~~~~~~~~-----------d~~s~g~~~~e~~~~~~  247 (262)
                      ++|+|||++..+....       ..++..|.+||           |+||+|++++++++.|.
T Consensus       212 vkL~DfG~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~SlGv~l~el~t~g~  273 (337)
T cd05054         212 VKICDFGLARDIYKDPDYVRKGDARLPLKWMAPESIFDKVYTTQSDVWSFGVLLWEIFSLGA  273 (337)
T ss_pred             EEEeccccchhcccCcchhhccCCCCCccccCcHHhcCCCCCccccHHHHHHHHHHHHHcCC
Confidence            9999999998653211       12334566666           56666666665554333

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto

>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

Probab=99.97  E-value=1.1e-30  Score=216.65  Aligned_cols=184  Identities=21%  Similarity=0.259  Sum_probs=141.6

Q ss_pred             EEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc---hHHHHHHHHHHHHhhh-CCCCCc
Q 024842           32 RQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN---NEQLEMVREEIRVSSL-FSHRNL  107 (262)
Q Consensus        32 ~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~---~~~~~~~~~E~~~l~~-l~h~~i  107 (262)
                      +.||+|+||.||+|++..+++                      .+|+|.+....   ....+....|..++.. ++||||
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~----------------------~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i   58 (316)
T cd05620           1 KVLGKGSFGKVLLAELKGKGE----------------------YFAVKALKKDVVLIDDDVECTMVEKRVLALAWENPFL   58 (316)
T ss_pred             CeeeeCCCeEEEEEEECCCCC----------------------EEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCCc
Confidence            469999999999999887655                      56777654331   2233455667777764 489999


Q ss_pred             cchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeeecCC
Q 024842          108 LPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDV  187 (262)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~di  187 (262)
                      +++++.+          ...+..|++|||+.+++|.+++.    ....+++..+..++.|++.||+|||+++  ++||||
T Consensus        59 ~~~~~~~----------~~~~~~~lv~E~~~~g~L~~~i~----~~~~~~~~~~~~~~~qi~~~l~~lH~~~--ivHrDl  122 (316)
T cd05620          59 THLYCTF----------QTKEHLFFVMEFLNGGDLMFHIQ----DKGRFDLYRATFYAAEIVCGLQFLHSKG--IIYRDL  122 (316)
T ss_pred             cCeeEEE----------EeCCEEEEEECCCCCCcHHHHHH----HcCCCCHHHHHHHHHHHHHHHHHHHHCC--eEecCC
Confidence            9999887          34678999999999999988875    3456899999999999999999999998  999999


Q ss_pred             CCCcEEEecCCCCCCceEEeeccceeeccc-----cCccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecccCC
Q 024842          188 KPGNILITCRKGQPPLAILMDFGSARPAQS-----KFALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMFGR  262 (262)
Q Consensus       188 kp~Nill~~~~~~~~~~kl~Dfg~a~~~~~-----~~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~G~  262 (262)
                      ||+||+++.++    .++|+|||++.....     ....++..|.+||.+....     .....|+|++|+++|+|++|+
T Consensus       123 kp~Nil~~~~~----~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-----~~~~~DiwslGvil~el~~g~  193 (316)
T cd05620         123 KLDNVMLDRDG----HIKIADFGMCKENVFGDNRASTFCGTPDYIAPEILQGLK-----YTFSVDWWSFGVLLYEMLIGQ  193 (316)
T ss_pred             CHHHeEECCCC----CEEeCccCCCeecccCCCceeccCCCcCccCHHHHcCCC-----CCcccchhhhHHHHHHHHhCC
Confidence            99999998776    699999999874321     1234667777777553221     122468888888888888875

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I

>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

Probab=99.97  E-value=9.6e-31  Score=211.82  Aligned_cols=194  Identities=19%  Similarity=0.252  Sum_probs=149.7

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCCC
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSH  104 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~h  104 (262)
                      .++|++.+.||+|+||.||+|++..+++                      .+++|............+.+|+.+++.++|
T Consensus         8 ~~~y~~~~~lg~g~~g~vy~~~~~~~~~----------------------~~aik~~~~~~~~~~~~~~~e~~~l~~~~h   65 (267)
T cd06646           8 QHDYELIQRVGSGTYGDVYKARNLHTGE----------------------LAAVKIIKLEPGDDFSLIQQEIFMVKECKH   65 (267)
T ss_pred             hhhcchhheeecCCCeEEEEEEECCCCe----------------------EEEEEEEecCccchHHHHHHHHHHHHhcCC
Confidence            4689999999999999999999876544                      577777655544445667889999999999


Q ss_pred             CCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeee
Q 024842          105 RNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAH  184 (262)
Q Consensus       105 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH  184 (262)
                      |||+++++.+.          .....+++|||+.+++|.+++.    ....+++..+..++.|++.||.|||+.+  ++|
T Consensus        66 ~~ii~~~~~~~----------~~~~~~iv~e~~~~~~L~~~~~----~~~~~~~~~~~~~~~qi~~~l~~lH~~~--i~H  129 (267)
T cd06646          66 CNIVAYFGSYL----------SREKLWICMEYCGGGSLQDIYH----VTGPLSELQIAYVCRETLQGLAYLHSKG--KMH  129 (267)
T ss_pred             CCeeeeeEEEE----------eCCEEEEEEeCCCCCcHHHHHH----hcCCCCHHHHHHHHHHHHHHHHHHHHCC--ccc
Confidence            99999998873          3567899999999999998875    3456899999999999999999999988  999


Q ss_pred             cCCCCCcEEEecCCCCCCceEEeeccceeeccccC-----ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecc
Q 024842          185 NDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELM  259 (262)
Q Consensus       185 ~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~  259 (262)
                      +||+|+||+++.++    .++|+|||++.......     ..++..|.+||.+.....  .......|+|++|+++++|+
T Consensus       130 ~dl~p~nill~~~~----~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~--~~~~~~~Dvws~G~il~el~  203 (267)
T cd06646         130 RDIKGANILLTDNG----DVKLADFGVAAKITATIAKRKSFIGTPYWMAPEVAAVEKN--GGYNQLCDIWAVGITAIELA  203 (267)
T ss_pred             cCCCHHHEEECCCC----CEEECcCccceeecccccccCccccCccccCHhHcccccC--CCCcchhhHHHHHHHHHHHH
Confidence            99999999998766    69999999998654321     234455666664421110  00112357777777777777


Q ss_pred             cCC
Q 024842          260 FGR  262 (262)
Q Consensus       260 ~G~  262 (262)
                      +|+
T Consensus       204 ~g~  206 (267)
T cd06646         204 ELQ  206 (267)
T ss_pred             hCC
Confidence            663

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.97  E-value=5.8e-32  Score=219.70  Aligned_cols=191  Identities=22%  Similarity=0.304  Sum_probs=164.7

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc-chHHHHHHHHHHHHhhhCC
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ-NNEQLEMVREEIRVSSLFS  103 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~-~~~~~~~~~~E~~~l~~l~  103 (262)
                      ...|...+.||+|.||.||+|.+..+++                      .||+|++... .....+.+..|+.++..++
T Consensus        12 ~~~~~~~~~IgrGsfG~Vyk~~d~~t~k----------------------~vAiKii~Le~~~deIediqqei~~Ls~~~   69 (467)
T KOG0201|consen   12 ELLYTKLELIGRGSFGEVYKAIDNKTKK----------------------VVAIKIIDLEEAEDEIEDIQQEISVLSQCD   69 (467)
T ss_pred             ccccccchhccccccceeeeeeeccccc----------------------eEEEEEechhhcchhhHHHHHHHHHHHhcC
Confidence            5678888999999999999999998866                      6888887665 3444678889999999999


Q ss_pred             CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCee
Q 024842          104 HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYA  183 (262)
Q Consensus       104 h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~iv  183 (262)
                      ++||.+.++.++          +...+|++|||+.+|++.+.+.    ....+.+..+..++++++.||.|||..+  .+
T Consensus        70 ~~~it~yygsyl----------~g~~LwiiMey~~gGsv~~lL~----~~~~~~E~~i~~ilre~l~~l~ylH~~~--ki  133 (467)
T KOG0201|consen   70 SPNITEYYGSYL----------KGTKLWIIMEYCGGGSVLDLLK----SGNILDEFEIAVILREVLKGLDYLHSEK--KI  133 (467)
T ss_pred             cchHHhhhhhee----------ecccHHHHHHHhcCcchhhhhc----cCCCCccceeeeehHHHHHHhhhhhhcc--ee
Confidence            999999999985          3678999999999999999986    4555689999999999999999999998  99


Q ss_pred             ecCCCCCcEEEecCCCCCCceEEeeccceeecccc-----CccCcccCCcccchhhhhhhhhhhhhcCcccchheeheec
Q 024842          184 HNDVKPGNILITCRKGQPPLAILMDFGSARPAQSK-----FALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMREL  258 (262)
Q Consensus       184 H~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~-----~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l  258 (262)
                      |||||+.|||+..++    .+||+|||.+.+.+..     ...|++.|++||-+..-|+.     ...||||+|++++||
T Consensus       134 HrDIKaanil~s~~g----~vkl~DfgVa~ql~~~~~rr~tfvGTPfwMAPEVI~~~~Y~-----~KADIWSLGITaiEl  204 (467)
T KOG0201|consen  134 HRDIKAANILLSESG----DVKLADFGVAGQLTNTVKRRKTFVGTPFWMAPEVIKQSGYD-----TKADIWSLGITAIEL  204 (467)
T ss_pred             cccccccceeEeccC----cEEEEecceeeeeechhhccccccccccccchhhhcccccc-----chhhhhhhhHHHHHH
Confidence            999999999998876    6999999999987643     34699999999988644433     457999999999999


Q ss_pred             ccCC
Q 024842          259 MFGR  262 (262)
Q Consensus       259 ~~G~  262 (262)
                      .+|.
T Consensus       205 a~Ge  208 (467)
T KOG0201|consen  205 AKGE  208 (467)
T ss_pred             hcCC
Confidence            9983

>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

Probab=99.97  E-value=1.2e-30  Score=216.27  Aligned_cols=184  Identities=23%  Similarity=0.291  Sum_probs=141.2

Q ss_pred             EEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc---chHHHHHHHHHHHHhhh-CCCCCc
Q 024842           32 RQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ---NNEQLEMVREEIRVSSL-FSHRNL  107 (262)
Q Consensus        32 ~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~---~~~~~~~~~~E~~~l~~-l~h~~i  107 (262)
                      +.||+|+||.||+|++..+++                      .+|+|.+...   ..........|..+++. ++||||
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~----------------------~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~i   58 (316)
T cd05619           1 KMLGKGSFGKVFLAELKGTNQ----------------------FFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFL   58 (316)
T ss_pred             CeeeeCCCEEEEEEEECCCCC----------------------EEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCcC
Confidence            469999999999999887655                      5677765433   12223455667777765 589999


Q ss_pred             cchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeeecCC
Q 024842          108 LPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDV  187 (262)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~di  187 (262)
                      +++++.+          ...+..+++|||+.+++|.+++.    ....+++.++..++.|++.||.|||+.+  ++||||
T Consensus        59 v~~~~~~----------~~~~~~~lv~ey~~~g~L~~~l~----~~~~~~~~~~~~~~~qi~~al~~LH~~~--ivHrdi  122 (316)
T cd05619          59 THLYCTF----------QTKENLFFVMEYLNGGDLMFHIQ----SCHKFDLPRATFYAAEIICGLQFLHSKG--IVYRDL  122 (316)
T ss_pred             cceEEEE----------EeCCEEEEEEeCCCCCcHHHHHH----HcCCCCHHHHHHHHHHHHHHHHHHHhCC--eEeCCC
Confidence            9999887          34667999999999999998876    3455899999999999999999999998  999999


Q ss_pred             CCCcEEEecCCCCCCceEEeeccceeecccc-----CccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecccCC
Q 024842          188 KPGNILITCRKGQPPLAILMDFGSARPAQSK-----FALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMFGR  262 (262)
Q Consensus       188 kp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~-----~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~G~  262 (262)
                      ||+||+++.++    .++|+|||++......     ...++..|.+||.+..-.     .....|+|++|+++|+|++|+
T Consensus       123 kp~Nil~~~~~----~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-----~~~~~DvwslG~il~el~~G~  193 (316)
T cd05619         123 KLDNILLDTDG----HIKIADFGMCKENMLGDAKTCTFCGTPDYIAPEILLGQK-----YNTSVDWWSFGVLLYEMLIGQ  193 (316)
T ss_pred             CHHHEEECCCC----CEEEccCCcceECCCCCCceeeecCCccccCHHHHcCCC-----CCchhhhhhHHHHHHHHHhCC
Confidence            99999998776    6999999998753211     124667778777553221     223468888888888888874

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in

>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=3e-30  Score=208.38  Aligned_cols=190  Identities=19%  Similarity=0.231  Sum_probs=148.9

Q ss_pred             CceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc-----hHHHHHHHHHHHHhh
Q 024842           26 NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN-----NEQLEMVREEIRVSS  100 (262)
Q Consensus        26 ~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~-----~~~~~~~~~E~~~l~  100 (262)
                      ++|++.+.||+|++|.||.|.+..+++                      .+++|.+....     ....+.+.+|+.+++
T Consensus         2 ~~~~~~~~lg~g~~~~vy~~~~~~~~~----------------------~~~lk~~~~~~~~~~~~~~~~~~~~e~~~l~   59 (263)
T cd06625           2 TNWRRGKLLGQGAFGRVYLCYDVDTGR----------------------ELAVKQVPFDPDSPETKKEVNALECEIQLLK   59 (263)
T ss_pred             CcccccceecCCCceEEEEEEEcCCCc----------------------EEEEEEEeecccchhhHHHHHHHHHHHHHHH
Confidence            579999999999999999999876554                      56666554321     223456888999999


Q ss_pred             hCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCC
Q 024842          101 LFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEP  180 (262)
Q Consensus       101 ~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~  180 (262)
                      .++||||+++++.+.          .....++++|++.+++|.+++.    ....+++..++.++.|++.||.|||+.+ 
T Consensus        60 ~l~~~~i~~~~~~~~----------~~~~~~~v~e~~~~~~l~~~~~----~~~~~~~~~~~~~~~~l~~~l~~lH~~~-  124 (263)
T cd06625          60 NLQHERIVQYYGCLR----------DDETLSIFMEYMPGGSVKDQLK----AYGALTETVTRKYTRQILEGVEYLHSNM-  124 (263)
T ss_pred             hCCCCCeeeeEEEEc----------cCCeEEEEEEECCCCcHHHHHH----HhCCCCHHHHHHHHHHHHHHHHHHHhCC-
Confidence            999999999999873          3568999999999999998876    3455899999999999999999999998 


Q ss_pred             CeeecCCCCCcEEEecCCCCCCceEEeeccceeecccc--------CccCcccCCcccchhhhhhhhhhhhhcCcccchh
Q 024842          181 PYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSK--------FALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQ  252 (262)
Q Consensus       181 ~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~--------~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g  252 (262)
                       ++|+||+|+||+++.++    .++|+|||++......        ...++..|.+||.+....     .....|+|++|
T Consensus       125 -i~H~dl~p~nilv~~~~----~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-----~~~~~Di~slG  194 (263)
T cd06625         125 -IVHRDIKGANILRDSAG----NVKLGDFGASKRLQTICSSGTGMKSVTGTPYWMSPEVISGEG-----YGRKADVWSVG  194 (263)
T ss_pred             -eecCCCCHHHEEEcCCC----CEEEeecccceeccccccccccccCCCcCccccCcceeccCC-----CCchhhhHHHH
Confidence             99999999999998766    6999999998765432        123445677777654322     12246777777


Q ss_pred             eeheecccCC
Q 024842          253 ILMRELMFGR  262 (262)
Q Consensus       253 ~~~~~l~~G~  262 (262)
                      +++|+|++|+
T Consensus       195 ~il~el~~g~  204 (263)
T cd06625         195 CTVVEMLTEK  204 (263)
T ss_pred             HHHHHHHhCC
Confidence            7777777774

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t

>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

Probab=99.97  E-value=1.9e-30  Score=215.49  Aligned_cols=184  Identities=22%  Similarity=0.276  Sum_probs=142.8

Q ss_pred             EEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc---chHHHHHHHHHHHHhhhC-CCCCc
Q 024842           32 RQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ---NNEQLEMVREEIRVSSLF-SHRNL  107 (262)
Q Consensus        32 ~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~---~~~~~~~~~~E~~~l~~l-~h~~i  107 (262)
                      +.||+|+||.||+|++..+++                      .+|+|.+...   .....+.+..|..+++.+ +||||
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~----------------------~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i   58 (320)
T cd05590           1 RVLGKGSFGKVMLARLKESGR----------------------LYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFL   58 (320)
T ss_pred             CeeeeCCCeEEEEEEEcCCCC----------------------EEEEEEEEHHHHhhccHHHHHHHHHHHHHhccCCCch
Confidence            368999999999999876654                      5777765432   223345566788887766 69999


Q ss_pred             cchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeeecCC
Q 024842          108 LPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDV  187 (262)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~di  187 (262)
                      +++++.+          ...+..|++|||+.+++|.+++.    ....+++..++.++.|++.||.|||+.+  ++||||
T Consensus        59 v~~~~~~----------~~~~~~~iv~Ey~~~g~L~~~i~----~~~~l~~~~~~~~~~ql~~~L~~lH~~~--ivH~dl  122 (320)
T cd05590          59 TQLYCCF----------QTPDRLFFVMEFVNGGDLMFHIQ----KSRRFDEARARFYAAEITSALMFLHDKG--IIYRDL  122 (320)
T ss_pred             hceeeEE----------EcCCEEEEEEcCCCCchHHHHHH----HcCCCCHHHHHHHHHHHHHHHHHHHHCC--eEeCCC
Confidence            9999887          34677999999999999998776    4456999999999999999999999998  999999


Q ss_pred             CCCcEEEecCCCCCCceEEeeccceeecccc-----CccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecccCC
Q 024842          188 KPGNILITCRKGQPPLAILMDFGSARPAQSK-----FALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMFGR  262 (262)
Q Consensus       188 kp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~-----~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~G~  262 (262)
                      ||+|||++.++    .++|+|||++......     ...++..|.+||.+....     .....|+||+|+++|+|++|+
T Consensus       123 kp~NIli~~~~----~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-----~~~~~DiwslG~il~el~~g~  193 (320)
T cd05590         123 KLDNVLLDHEG----HCKLADFGMCKEGIFNGKTTSTFCGTPDYIAPEILQEML-----YGPSVDWWAMGVLLYEMLCGH  193 (320)
T ss_pred             CHHHeEECCCC----cEEEeeCCCCeecCcCCCcccccccCccccCHHHHcCCC-----CCCccchhhhHHHHHHHhhCC
Confidence            99999998776    6999999998754221     124667777777553221     112468888888888888875

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal

>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

Probab=99.97  E-value=1.6e-30  Score=212.99  Aligned_cols=197  Identities=21%  Similarity=0.305  Sum_probs=141.8

Q ss_pred             CceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc--hHHHHHHHHHHHHhhhC-
Q 024842           26 NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN--NEQLEMVREEIRVSSLF-  102 (262)
Q Consensus        26 ~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~--~~~~~~~~~E~~~l~~l-  102 (262)
                      ++|++.+.||+|+||.||+|++...+                     +..+|+|.+....  ......+.+|+.+++.+ 
T Consensus         1 ~~Y~~~~~lg~G~~g~Vy~~~~~~~~---------------------~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~   59 (290)
T cd07862           1 QQYECVAEIGEGAYGKVFKARDLKNG---------------------GRFVALKRVRVQTGEEGMPLSTIREVAVLRHLE   59 (290)
T ss_pred             CCcceeeEeccCCCeEEEEEEEcCCC---------------------CeEEEEEEEecccCCCCchHHHHHHHHHHHhhc
Confidence            47999999999999999999985432                     1256777654332  11223445666666554 


Q ss_pred             --CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCC
Q 024842          103 --SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEP  180 (262)
Q Consensus       103 --~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~  180 (262)
                        +||||+++++++...     ........+++||++. ++|.+++...  ....+++..++.++.|++.||.|||+++ 
T Consensus        60 ~~~hpniv~~~~~~~~~-----~~~~~~~~~lv~e~~~-~~l~~~~~~~--~~~~~~~~~~~~i~~qi~~aL~~lH~~~-  130 (290)
T cd07862          60 TFEHPNVVRLFDVCTVS-----RTDRETKLTLVFEHVD-QDLTTYLDKV--PEPGVPTETIKDMMFQLLRGLDFLHSHR-  130 (290)
T ss_pred             ccCCCCcceEEEEEecc-----cCCCCCcEEEEEccCC-CCHHHHHHhC--CCCCCCHHHHHHHHHHHHHHHHHHHHCC-
Confidence              699999999876310     1123456899999876 6888877532  2234899999999999999999999998 


Q ss_pred             CeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC----ccCcccCCcccchhhhhhhhhhhhhcCcccchheehe
Q 024842          181 PYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMR  256 (262)
Q Consensus       181 ~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~  256 (262)
                       ++||||||+|||++.++    .++|+|||++.......    ..++..|.+||.+....     .....|+||+|+++|
T Consensus       131 -iiH~dlkp~Nil~~~~~----~~kl~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-----~~~~~DiwslG~il~  200 (290)
T cd07862         131 -VVHRDLKPQNILVTSSG----QIKLADFGLARIYSFQMALTSVVVTLWYRAPEVLLQSS-----YATPVDLWSVGCIFA  200 (290)
T ss_pred             -eeeCCCCHHHEEEcCCC----CEEEccccceEeccCCcccccccccccccChHHHhCCC-----CCCccchHHHHHHHH
Confidence             99999999999998776    69999999998654322    24566777777543211     122467777787777


Q ss_pred             ecccCC
Q 024842          257 ELMFGR  262 (262)
Q Consensus       257 ~l~~G~  262 (262)
                      +|++|+
T Consensus       201 el~~g~  206 (290)
T cd07862         201 EMFRRK  206 (290)
T ss_pred             HHHcCC
Confidence            777764

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla

>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.97  E-value=1.3e-30  Score=222.53  Aligned_cols=186  Identities=22%  Similarity=0.275  Sum_probs=154.2

Q ss_pred             EEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCCCCCccchh
Q 024842           32 RQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSHRNLLPLL  111 (262)
Q Consensus        32 ~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~  111 (262)
                      -.||+|.||+||.|++..++.                      .+|+|.+........+-+.+|+.+.+.++|.||++++
T Consensus       581 vVLGKGTYG~VYA~RD~~tqv----------------------rIaIKEIpekdsr~~QPLhEEIaLH~~LrHkNIVrYL  638 (1226)
T KOG4279|consen  581 VVLGKGTYGTVYAARDMDTQV----------------------RIAIKEIPEKDSREVQPLHEEIALHSTLRHKNIVRYL  638 (1226)
T ss_pred             EEeecCceeEEEeecccccee----------------------EEEeeecccccchhhccHHHHHHHHHHHhhHhHHHHh
Confidence            359999999999999988755                      6889988888888888999999999999999999999


Q ss_pred             hhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCC--CHHHHHHHHHHHHHHHHHHHcCCCCeeecCCCC
Q 024842          112 DHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFF--STSDVLQIFYQICAGLKHMHSLEPPYAHNDVKP  189 (262)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~--~~~~~~~i~~ql~~~l~~lH~~~~~ivH~dikp  189 (262)
                      +.+          +.++.+-++||..+||+|.+++..   ..+++  .+.++-.+..||+.||.|||++.  |||||||-
T Consensus       639 Gs~----------senGf~kIFMEqVPGGSLSsLLrs---kWGPlKDNEstm~fYtkQILeGLkYLHen~--IVHRDIKG  703 (1226)
T KOG4279|consen  639 GSV----------SENGFFKIFMEQVPGGSLSSLLRS---KWGPLKDNESTMNFYTKQILEGLKYLHENK--IVHRDIKG  703 (1226)
T ss_pred             hcc----------CCCCeEEEEeecCCCCcHHHHHHh---ccCCCccchhHHHHHHHHHHHHhhhhhhcc--eeeccccC
Confidence            997          667888899999999999998874   44556  88999999999999999999998  99999999


Q ss_pred             CcEEEecCCCCCCceEEeeccceeeccc-----cCccCcccCCcccch--hhhhhhhhhhhhcCcccchheeheecccCC
Q 024842          190 GNILITCRKGQPPLAILMDFGSARPAQS-----KFALGQRRYSCRNGL--LSIVLHLSELLSCGTVRVIQILMRELMFGR  262 (262)
Q Consensus       190 ~Nill~~~~~~~~~~kl~Dfg~a~~~~~-----~~~~~~~~~~~~~d~--~s~g~~~~e~~~~~~v~~~g~~~~~l~~G~  262 (262)
                      +|+|+..-   ...+||+|||.++....     +...|+-.|++||-+  ..-|+-.     ..||||+|+++.||.|||
T Consensus       704 DNVLvNTy---SGvlKISDFGTsKRLAginP~TETFTGTLQYMAPEvIDqG~RGYG~-----aADIWS~GCT~vEMATGr  775 (1226)
T KOG4279|consen  704 DNVLVNTY---SGVLKISDFGTSKRLAGINPCTETFTGTLQYMAPEVIDQGPRGYGK-----AADIWSFGCTMVEMATGR  775 (1226)
T ss_pred             CcEEEeec---cceEEecccccchhhccCCccccccccchhhhChHhhccCCcCCCc-----hhhhhhccceeEeeccCC
Confidence            99999733   33899999999986532     223577778887744  2223221     258888888888888887

>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

Probab=99.97  E-value=3.5e-30  Score=217.71  Aligned_cols=195  Identities=22%  Similarity=0.337  Sum_probs=148.7

Q ss_pred             cCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc--chHHHHHHHHHHHHhhh
Q 024842           24 NENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ--NNEQLEMVREEIRVSSL  101 (262)
Q Consensus        24 ~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~--~~~~~~~~~~E~~~l~~  101 (262)
                      ..++|++.+.||+|+||.||++.+..+++                      .+++|++...  .......+.+|+.+++.
T Consensus        22 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~----------------------~vaiK~~~~~~~~~~~~~~~~~E~~~l~~   79 (364)
T cd07875          22 VLKRYQNLKPIGSGAQGIVCAAYDAILER----------------------NVAIKKLSRPFQNQTHAKRAYRELVLMKC   79 (364)
T ss_pred             hhcceeEEEEeecCCCeEEEEEEECCCCc----------------------EEEEEEeCccccCchhHHHHHHHHHHHHh
Confidence            45789999999999999999999877655                      5677766533  33445677889999999


Q ss_pred             CCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCC
Q 024842          102 FSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPP  181 (262)
Q Consensus       102 l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~  181 (262)
                      ++||||+++++.+....    ........|++|||+.+ +|.+.+.    .  .+++..++.++.|++.||.|||+++  
T Consensus        80 l~h~~ii~~~~~~~~~~----~~~~~~~~~lv~e~~~~-~l~~~~~----~--~~~~~~~~~~~~qi~~aL~~LH~~~--  146 (364)
T cd07875          80 VNHKNIIGLLNVFTPQK----SLEEFQDVYIVMELMDA-NLCQVIQ----M--ELDHERMSYLLYQMLCGIKHLHSAG--  146 (364)
T ss_pred             cCCCCccccceeecccc----cccccCeEEEEEeCCCC-CHHHHHH----h--cCCHHHHHHHHHHHHHHHHHHhhCC--
Confidence            99999999998763100    00123457999998864 6666553    1  3788999999999999999999998  


Q ss_pred             eeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC----ccCcccCCcccchhhhhhhhhhhhhcCcccchheehee
Q 024842          182 YAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRE  257 (262)
Q Consensus       182 ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~  257 (262)
                      |+||||||+||+++.++    .+||+|||++.......    ..++..|.+||.+....     .....|+||+|+++|+
T Consensus       147 ivH~Dlkp~NIll~~~~----~~kL~DfG~a~~~~~~~~~~~~~~t~~y~aPE~~~~~~-----~~~~~DiwSlG~il~e  217 (364)
T cd07875         147 IIHRDLKPSNIVVKSDC----TLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMG-----YKENVDIWSVGCIMGE  217 (364)
T ss_pred             eecCCCCHHHEEECCCC----cEEEEeCCCccccCCCCcccCCcccCCcCCHHHHhCCC-----CCchhhHHhHHHHHHH
Confidence            99999999999998776    69999999998654432    24667788887654322     1224688888888888


Q ss_pred             cccCC
Q 024842          258 LMFGR  262 (262)
Q Consensus       258 l~~G~  262 (262)
                      |++|+
T Consensus       218 ll~g~  222 (364)
T cd07875         218 MIKGG  222 (364)
T ss_pred             HHhCC
Confidence            88874

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

Probab=99.97  E-value=2.1e-30  Score=214.98  Aligned_cols=195  Identities=23%  Similarity=0.269  Sum_probs=142.8

Q ss_pred             EEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCCCCCccch
Q 024842           31 LRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSHRNLLPL  110 (262)
Q Consensus        31 ~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~  110 (262)
                      .++||+|+||.||+|++....                    ....+++|.+.....  .....+|+.+++.++||||+++
T Consensus         6 ~~~lG~G~~g~Vy~~~~~~~~--------------------~~~~~aiK~~~~~~~--~~~~~~E~~~l~~l~h~niv~~   63 (317)
T cd07868           6 GCKVGRGTYGHVYKAKRKDGK--------------------DDRDYALKQIEGTGI--SMSACREIALLRELKHPNVISL   63 (317)
T ss_pred             ccccccCCCeEEEEEEEccCC--------------------CCceEEEEEECCCCC--cHHHHHHHHHHHhcCCCCCcce
Confidence            468999999999999975421                    123678887654322  2446789999999999999999


Q ss_pred             hhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhh-----cCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeeec
Q 024842          111 LDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQT-----KKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHN  185 (262)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~-----~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~  185 (262)
                      ++.+..        ......+++|+++. ++|.+++.....     ....+++..++.++.|++.||.|||+++  |+||
T Consensus        64 ~~~~~~--------~~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~~--ivHr  132 (317)
T cd07868          64 QKVFLS--------HADRKVWLLFDYAE-HDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHANW--VLHR  132 (317)
T ss_pred             eeeEec--------CCCcEEEEEEeccC-CCHHHHHHhcccccccCCcccCCHHHHHHHHHHHHHHHHHHHhCC--EEcC
Confidence            988742        33456889999765 577777653221     1235899999999999999999999999  9999


Q ss_pred             CCCCCcEEEecCCCCCCceEEeeccceeeccccC--------ccCcccCCcccchhhhhhhhhhhhhcCcccchheehee
Q 024842          186 DVKPGNILITCRKGQPPLAILMDFGSARPAQSKF--------ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRE  257 (262)
Q Consensus       186 dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~--------~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~  257 (262)
                      ||||+|||+..+++....+||+|||++....+..        ..++..|.+||.+....    ......|+||+|+++++
T Consensus       133 Dlkp~Nil~~~~~~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~----~~~~~~DiwslG~il~e  208 (317)
T cd07868         133 DLKPANILVMGEGPERGRVKIADMGFARLFNSPLKPLADLDPVVVTFWYRAPELLLGAR----HYTKAIDIWAIGCIFAE  208 (317)
T ss_pred             CCCHHHEEEecCCCCcCcEEEeecCceeccCCCCccccccCCccccccccCCHHHcCCC----CcCchhhHHHHHHHHHH
Confidence            9999999996544344479999999998764321        24556677777653321    11223688888888888


Q ss_pred             cccCC
Q 024842          258 LMFGR  262 (262)
Q Consensus       258 l~~G~  262 (262)
                      |++|+
T Consensus       209 l~~g~  213 (317)
T cd07868         209 LLTSE  213 (317)
T ss_pred             HHhCC
Confidence            88874

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p

>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

Probab=99.97  E-value=6e-30  Score=209.72  Aligned_cols=190  Identities=25%  Similarity=0.340  Sum_probs=151.7

Q ss_pred             CceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc---chHHHHHHHHHHHHhhhC
Q 024842           26 NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ---NNEQLEMVREEIRVSSLF  102 (262)
Q Consensus        26 ~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~---~~~~~~~~~~E~~~l~~l  102 (262)
                      ++|++.+.||+|++|.||++.+..+++                      .+++|.+...   .....+.+.+|+++++.+
T Consensus         1 ~~y~~~~~ig~g~~~~vy~~~~~~~~~----------------------~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l   58 (290)
T cd05580           1 DDFEFIKTLGTGSFGRVMLVRHKGSGK----------------------YYALKILSKAKIVKLKQVEHVLNEKRILQSI   58 (290)
T ss_pred             CceEEEEEeecCCCeEEEEEEEcCCCC----------------------EEEEEEEEHHHhhhhhHHHHHHHHHHHHHhC
Confidence            479999999999999999999876554                      5677765432   233456788899999999


Q ss_pred             CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCe
Q 024842          103 SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPY  182 (262)
Q Consensus       103 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~i  182 (262)
                      +||||+++++.+          ......+++|||+.+++|.+++.    ....+++..++.++.|++.||.|||+.+  +
T Consensus        59 ~h~~i~~~~~~~----------~~~~~~~~v~e~~~~~~L~~~~~----~~~~l~~~~~~~~~~qil~~l~~lH~~~--i  122 (290)
T cd05580          59 RHPFLVNLYGSF----------QDDSNLYLVMEYVPGGELFSHLR----KSGRFPEPVARFYAAQVVLALEYLHSLD--I  122 (290)
T ss_pred             CCCCccceeeEE----------EcCCeEEEEEecCCCCCHHHHHH----HcCCCCHHHHHHHHHHHHHHHHHHHHCC--E
Confidence            999999999987          33567899999999999999886    4456999999999999999999999988  9


Q ss_pred             eecCCCCCcEEEecCCCCCCceEEeeccceeeccccC--ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheeccc
Q 024842          183 AHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF--ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMF  260 (262)
Q Consensus       183 vH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~--~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~  260 (262)
                      +|+||+|+||+++.++    .++|+|||++.......  ..++..|.+||.+..-.     .....|+|++|+++++|++
T Consensus       123 ~H~dl~p~nili~~~~----~~kl~dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~-----~~~~~Di~slG~il~~l~~  193 (290)
T cd05580         123 VYRDLKPENLLLDSDG----YIKITDFGFAKRVKGRTYTLCGTPEYLAPEIILSKG-----YGKAVDWWALGILIYEMLA  193 (290)
T ss_pred             ecCCCCHHHEEECCCC----CEEEeeCCCccccCCCCCCCCCCccccChhhhcCCC-----CCccccHHHHHHHHHHHHh
Confidence            9999999999998776    69999999998765432  23556677777543221     1124688888888888887


Q ss_pred             CC
Q 024842          261 GR  262 (262)
Q Consensus       261 G~  262 (262)
                      |+
T Consensus       194 g~  195 (290)
T cd05580         194 GY  195 (290)
T ss_pred             CC
Confidence            74

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi

>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

Probab=99.97  E-value=4.4e-30  Score=207.91  Aligned_cols=194  Identities=19%  Similarity=0.267  Sum_probs=146.3

Q ss_pred             cCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc-chHHHHHHHHHHHHhhhC
Q 024842           24 NENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ-NNEQLEMVREEIRVSSLF  102 (262)
Q Consensus        24 ~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~-~~~~~~~~~~E~~~l~~l  102 (262)
                      +.++|++.+.||+|+||.||+|.+...++                   ....+++|..... .......+..|+.+++.+
T Consensus         2 ~~~~~~~~~~lg~g~~g~vy~~~~~~~~~-------------------~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l   62 (266)
T cd05033           2 DPSYVTIEKVIGGGEFGEVCRGRLKLPGK-------------------KEIDVAIKTLKAGSSDKQRLDFLTEASIMGQF   62 (266)
T ss_pred             ChHHceeeeEecCCccceEEEEEEccCCC-------------------CcceEEEEEcCCCCChHHHHHHHHHHHHHHhC
Confidence            45789999999999999999999865422                   1236788876544 233456788899999999


Q ss_pred             CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCe
Q 024842          103 SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPY  182 (262)
Q Consensus       103 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~i  182 (262)
                      +||||+++++.+          ......+++||++.+++|.+++..   ....+++..++.++.|++.||.|||+++  +
T Consensus        63 ~h~~i~~~~~~~----------~~~~~~~iv~e~~~~~~L~~~~~~---~~~~~~~~~~~~~~~~l~~~l~~Lh~~~--i  127 (266)
T cd05033          63 DHPNIIRLEGVV----------TKSRPVMIITEYMENGSLDKFLRE---NDGKFTVGQLVGMLRGIASGMKYLSEMN--Y  127 (266)
T ss_pred             CCCCcceEeEEE----------ecCCceEEEEEcCCCCCHHHHHHh---ccCCCCHHHHHHHHHHHHHHHHHHHhCC--c
Confidence            999999999876          335668999999999999998753   2346899999999999999999999988  9


Q ss_pred             eecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-------ccCcccCCcccchhhhhhhhhhhhhcCcccchheeh
Q 024842          183 AHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-------ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILM  255 (262)
Q Consensus       183 vH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-------~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~  255 (262)
                      +|+||||+||+++.++    .++|+|||++.......       ...+..|.+|+.+....     .....|+|++|+++
T Consensus       128 ~H~di~p~nili~~~~----~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~~~-----~~~~~Dv~slG~~l  198 (266)
T cd05033         128 VHRDLAARNILVNSNL----VCKVSDFGLSRRLEDSEATYTTKGGKIPIRWTAPEAIAYRK-----FTSASDVWSFGIVM  198 (266)
T ss_pred             ccCCCCcceEEEcCCC----CEEECccchhhcccccccceeccCCCCCccccChhhhccCC-----CccccchHHHHHHH
Confidence            9999999999998766    69999999998764111       11223455555332211     11235666666666


Q ss_pred             eeccc
Q 024842          256 RELMF  260 (262)
Q Consensus       256 ~~l~~  260 (262)
                      ++|++
T Consensus       199 ~~l~~  203 (266)
T cd05033         199 WEVMS  203 (266)
T ss_pred             HHHHc
Confidence            66654

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment

>PHA03207 serine/threonine kinase US3; Provisional

Probab=99.97  E-value=2.9e-30  Score=220.09  Aligned_cols=188  Identities=19%  Similarity=0.230  Sum_probs=143.2

Q ss_pred             cCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCC
Q 024842           24 NENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFS  103 (262)
Q Consensus        24 ~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~  103 (262)
                      ...+|++.+.||+|+||.||+|......                    ....+++|.....     ....+|+.+++.++
T Consensus        90 ~~~~y~i~~~Lg~G~~g~Vy~~~~~~~~--------------------~~~~v~vK~~~~~-----~~~~~E~~il~~l~  144 (392)
T PHA03207         90 VRMQYNILSSLTPGSEGEVFVCTKHGDE--------------------QRKKVIVKAVTGG-----KTPGREIDILKTIS  144 (392)
T ss_pred             ccCceEEEEeecCCCCeEEEEEEEcCCc--------------------cceeEEEEecccc-----ccHHHHHHHHHhcC
Confidence            3467999999999999999999764322                    1235777766433     23457999999999


Q ss_pred             CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCee
Q 024842          104 HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYA  183 (262)
Q Consensus       104 h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~iv  183 (262)
                      ||||+++++.+          .+....+++|+++. ++|.+++.    ....+++..++.++.||+.||.|||+++  |+
T Consensus       145 h~~iv~~~~~~----------~~~~~~~lv~e~~~-~~l~~~l~----~~~~l~~~~~~~i~~ql~~aL~~LH~~g--iv  207 (392)
T PHA03207        145 HRAIINLIHAY----------RWKSTVCMVMPKYK-CDLFTYVD----RSGPLPLEQAITIQRRLLEALAYLHGRG--II  207 (392)
T ss_pred             CCCccceeeeE----------eeCCEEEEEehhcC-CCHHHHHH----hcCCCCHHHHHHHHHHHHHHHHHHHHCC--cc
Confidence            99999999887          44667899999765 67777774    4456999999999999999999999998  99


Q ss_pred             ecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-------ccCcccCCcccchhhhhhhhhhhhhcCcccchheehe
Q 024842          184 HNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-------ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMR  256 (262)
Q Consensus       184 H~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-------~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~  256 (262)
                      ||||||+|||++.++    .++|+|||++.......       ..++..|.+||.+..-.     .....|+|++|+++|
T Consensus       208 HrDlkp~Nill~~~~----~~~l~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-----~~~~~DvwslGvil~  278 (392)
T PHA03207        208 HRDVKTENIFLDEPE----NAVLGDFGAACKLDAHPDTPQCYGWSGTLETNSPELLALDP-----YCAKTDIWSAGLVLF  278 (392)
T ss_pred             ccCCCHHHEEEcCCC----CEEEccCccccccCcccccccccccccccCccCHhHhcCCC-----CCchhhHHHHHHHHH
Confidence            999999999998776    69999999987654321       24666777776442211     112367777777777


Q ss_pred             ecccCC
Q 024842          257 ELMFGR  262 (262)
Q Consensus       257 ~l~~G~  262 (262)
                      +|++|+
T Consensus       279 el~~g~  284 (392)
T PHA03207        279 EMSVKN  284 (392)
T ss_pred             HHHHCC
Confidence            777764

>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=6.9e-31  Score=214.17  Aligned_cols=197  Identities=22%  Similarity=0.287  Sum_probs=151.4

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCCC
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSH  104 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~h  104 (262)
                      .++|++.+.||.|++|.||++.+..+++                      .+++|..........+.+..|+.+++.++|
T Consensus         4 ~~~~~i~~~l~~g~~~~v~~~~~~~~~~----------------------~~~iK~~~~~~~~~~~~~~~e~~~l~~l~h   61 (280)
T cd06611           4 NDIWEIIGELGDGAFGKVYKAQHKETGL----------------------FAAAKIIQIESEEELEDFMVEIDILSECKH   61 (280)
T ss_pred             hhHHHHHHHhcCCCCceEEEEEEcCCCc----------------------EEEEEEEeeCCHHHHHHHHHHHHHHHhCCC
Confidence            4679999999999999999999876544                      678887776666666788899999999999


Q ss_pred             CCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeee
Q 024842          105 RNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAH  184 (262)
Q Consensus       105 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH  184 (262)
                      ||++++++.+.          .....+++|||+.+++|.+++..   ....+++..++.++.|++.||.|||+.+  ++|
T Consensus        62 ~~i~~~~~~~~----------~~~~~~lv~e~~~~~~L~~~~~~---~~~~l~~~~~~~~~~ql~~~l~~lh~~~--i~h  126 (280)
T cd06611          62 PNIVGLYEAYF----------YENKLWILIEFCDGGALDSIMLE---LERGLTEPQIRYVCRQMLEALNFLHSHK--VIH  126 (280)
T ss_pred             CceeEEEEEEe----------cCCeEEEEeeccCCCcHHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHHHHCC--ccc
Confidence            99999999873          36678999999999999988753   2345999999999999999999999999  999


Q ss_pred             cCCCCCcEEEecCCCCCCceEEeeccceeeccccC-----ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecc
Q 024842          185 NDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELM  259 (262)
Q Consensus       185 ~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~  259 (262)
                      +||+|+||+++.++    .++|+|||++.......     ..++..|.+||.+..-...........|+|++|+++|+|+
T Consensus       127 ~dl~p~nili~~~~----~~~l~d~g~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~~~~sDi~slG~il~~l~  202 (280)
T cd06611         127 RDLKAGNILLTLDG----DVKLADFGVSAKNKSTLQKRDTFIGTPYWMAPEVVACETFKDNPYDYKADIWSLGITLIELA  202 (280)
T ss_pred             CCCChhhEEECCCC----CEEEccCccchhhcccccccceeecchhhcCHHHHhhcccCCCCCCccccHHHHHHHHHHHH
Confidence            99999999998776    69999999876543221     1344455555543211000011112467777777777777


Q ss_pred             cCC
Q 024842          260 FGR  262 (262)
Q Consensus       260 ~G~  262 (262)
                      +|+
T Consensus       203 ~g~  205 (280)
T cd06611         203 QME  205 (280)
T ss_pred             hCC
Confidence            764

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti

>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]

Probab=99.97  E-value=3.4e-32  Score=212.05  Aligned_cols=190  Identities=21%  Similarity=0.341  Sum_probs=166.5

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCCC
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSH  104 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~h  104 (262)
                      .+-|.++.+||+|+||.||+|.++.++.                      .+|+|++...  .+.+++.+|+.++++.+.
T Consensus        32 EEVFDi~~KLGEGSYGSV~KAIH~EsG~----------------------v~AIK~VPV~--sDLQEIIKEISIMQQC~S   87 (502)
T KOG0574|consen   32 EEVFDIVGKLGEGSYGSVHKAIHRESGH----------------------VLAIKKVPVD--TDLQEIIKEISIMQQCKS   87 (502)
T ss_pred             HHHHHHHHHhcCCcchHHHHHHHhccCc----------------------EEEEEecCcc--chHHHHHHHHHHHHHcCC
Confidence            3467889999999999999999988765                      6788877654  346889999999999999


Q ss_pred             CCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeee
Q 024842          105 RNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAH  184 (262)
Q Consensus       105 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH  184 (262)
                      |+++++++.++          .+..+|+|||||-.|++.+.+..   ++.++++.++..+++.-+.||+|||...  -+|
T Consensus        88 ~yVVKYYGSYF----------K~sDLWIVMEYCGAGSiSDI~R~---R~K~L~E~EIs~iL~~TLKGL~YLH~~~--KIH  152 (502)
T KOG0574|consen   88 KYVVKYYGSYF----------KHSDLWIVMEYCGAGSISDIMRA---RRKPLSEQEISAVLRDTLKGLQYLHDLK--KIH  152 (502)
T ss_pred             chhhhhhhhhc----------cCCceEeehhhcCCCcHHHHHHH---hcCCccHHHHHHHHHHHHhHHHHHHHHH--HHH
Confidence            99999999984          26779999999999999998864   5677999999999999999999999977  899


Q ss_pred             cCCCCCcEEEecCCCCCCceEEeeccceeeccc-----cCccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecc
Q 024842          185 NDVKPGNILITCRKGQPPLAILMDFGSARPAQS-----KFALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELM  259 (262)
Q Consensus       185 ~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~-----~~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~  259 (262)
                      ||||+.|||+..++    ..||+|||.|-+..+     +...|++.|++|+-+-.+|+..     ..|+||+|++..||.
T Consensus       153 RDIKAGNILLNT~G----~AKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVI~EIGY~~-----~ADIWSLGITaIEMA  223 (502)
T KOG0574|consen  153 RDIKAGNILLNTDG----IAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIEEIGYDT-----KADIWSLGITAIEMA  223 (502)
T ss_pred             hhcccccEEEcccc----hhhhhhccccchhhhhHHhhCccccCcccccHHHHHHhccch-----hhhHhhhcchhhhhh
Confidence            99999999998777    799999999987653     4568999999999998888663     369999999999999


Q ss_pred             cCC
Q 024842          260 FGR  262 (262)
Q Consensus       260 ~G~  262 (262)
                      .||
T Consensus       224 EG~  226 (502)
T KOG0574|consen  224 EGR  226 (502)
T ss_pred             cCC
Confidence            997

>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

Probab=99.97  E-value=3.6e-30  Score=209.73  Aligned_cols=184  Identities=23%  Similarity=0.227  Sum_probs=141.3

Q ss_pred             eecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc---chHHHHHHHHHHHHhhhCCCCCccch
Q 024842           34 LGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ---NNEQLEMVREEIRVSSLFSHRNLLPL  110 (262)
Q Consensus        34 ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~---~~~~~~~~~~E~~~l~~l~h~~i~~~  110 (262)
                      ||+|+||.||++++..+++                      .+++|.+...   ..........|+++++.++||||+++
T Consensus         1 lg~G~~g~Vy~~~~~~~~~----------------------~~a~K~~~~~~~~~~~~~~~~~~E~~il~~l~hp~i~~~   58 (277)
T cd05607           1 LGKGGFGEVCAVQVKNTGK----------------------MYACKKLDKKRLKKKSGEKMALLEKEILEKVNSPFIVNL   58 (277)
T ss_pred             CCCCCceEEEEEEEccCCc----------------------EEEEEEEcHHHhhcchhhHHHHHHHHHHHhcCCCcEEEE
Confidence            6999999999999887655                      5677765432   11223345568999999999999999


Q ss_pred             hhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeeecCCCCC
Q 024842          111 LDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPG  190 (262)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~dikp~  190 (262)
                      ++.+          ......+++|||+.+++|.+++...  ....+++..++.++.|++.||+|||+.+  ++||||||+
T Consensus        59 ~~~~----------~~~~~~~lv~e~~~g~~L~~~~~~~--~~~~~~~~~~~~~~~qi~~al~~lH~~~--ivH~dikp~  124 (277)
T cd05607          59 AYAF----------ESKTHLCLVMSLMNGGDLKYHIYNV--GERGLEMERVIHYSAQITCGILHLHSMD--IVYRDMKPE  124 (277)
T ss_pred             EEEE----------ecCCeEEEEEecCCCCCHHHHHHhc--cccCCCHHHHHHHHHHHHHHHHHHHHCC--EEEccCChH
Confidence            8887          3356789999999999998876432  2334889999999999999999999988  999999999


Q ss_pred             cEEEecCCCCCCceEEeeccceeeccccC----ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecccCC
Q 024842          191 NILITCRKGQPPLAILMDFGSARPAQSKF----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMFGR  262 (262)
Q Consensus       191 Nill~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~G~  262 (262)
                      ||+++.++    .++|+|||++.......    ..++..|.+||.+..-.     .....|+||+|+++|+|++|+
T Consensus       125 Nili~~~~----~~~l~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-----~~~~~DvwslGv~l~el~~g~  191 (277)
T cd05607         125 NVLLDDQG----NCRLSDLGLAVELKDGKTITQRAGTNGYMAPEILKEEP-----YSYPVDWFAMGCSIYEMVAGR  191 (277)
T ss_pred             hEEEcCCC----CEEEeeceeeeecCCCceeeccCCCCCccCHHHHccCC-----CCCchhHHHHHHHHHHHHhCC
Confidence            99998766    69999999998765432    24566777777543221     123468888888888888774

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr

>PTZ00284 protein kinase; Provisional

Probab=99.97  E-value=3.3e-30  Score=224.42  Aligned_cols=196  Identities=22%  Similarity=0.304  Sum_probs=141.5

Q ss_pred             ecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhC
Q 024842           23 INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLF  102 (262)
Q Consensus        23 ~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l  102 (262)
                      +..++|++.+.||+|+||.||+|.+..+++                      .||+|++..... .......|+.+++.+
T Consensus       126 ~~~~~y~i~~~lG~G~fg~V~~a~~~~~~~----------------------~vAvK~i~~~~~-~~~~~~~e~~~l~~l  182 (467)
T PTZ00284        126 VSTQRFKILSLLGEGTFGKVVEAWDRKRKE----------------------YCAVKIVRNVPK-YTRDAKIEIQFMEKV  182 (467)
T ss_pred             cCCCcEEEEEEEEeccCEEEEEEEEcCCCe----------------------EEEEEEEecchh-hHHHHHHHHHHHHHH
Confidence            345789999999999999999999876654                      567776643221 223445566666666


Q ss_pred             CC------CCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHH
Q 024842          103 SH------RNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMH  176 (262)
Q Consensus       103 ~h------~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH  176 (262)
                      +|      .++++++.++.         ......+++|+++ +++|.+++.    ....+++..++.++.|++.||.|||
T Consensus       183 ~~~~~~~~~~i~~i~~~~~---------~~~~~~~iv~~~~-g~~l~~~l~----~~~~l~~~~~~~i~~qi~~aL~yLH  248 (467)
T PTZ00284        183 RQADPADRFPLMKIQRYFQ---------NETGHMCIVMPKY-GPCLLDWIM----KHGPFSHRHLAQIIFQTGVALDYFH  248 (467)
T ss_pred             hhcCcccCcceeeeEEEEE---------cCCceEEEEEecc-CCCHHHHHH----HcCCCCHHHHHHHHHHHHHHHHHHH
Confidence            54      45777777652         2245678888865 778888775    3456999999999999999999999


Q ss_pred             c-CCCCeeecCCCCCcEEEecCCC------------CCCceEEeeccceeecccc--CccCcccCCcccchhhhhhhhhh
Q 024842          177 S-LEPPYAHNDVKPGNILITCRKG------------QPPLAILMDFGSARPAQSK--FALGQRRYSCRNGLLSIVLHLSE  241 (262)
Q Consensus       177 ~-~~~~ivH~dikp~Nill~~~~~------------~~~~~kl~Dfg~a~~~~~~--~~~~~~~~~~~~d~~s~g~~~~e  241 (262)
                      + .+  |+||||||+|||++.++.            ....+||+|||.+......  ...++..|.+||-+....+    
T Consensus       249 ~~~g--IiHrDlKP~NILl~~~~~~~~~~~~~~~~~~~~~vkl~DfG~~~~~~~~~~~~~gt~~Y~APE~~~~~~~----  322 (467)
T PTZ00284        249 TELH--LMHTDLKPENILMETSDTVVDPVTNRALPPDPCRVRICDLGGCCDERHSRTAIVSTRHYRSPEVVLGLGW----  322 (467)
T ss_pred             hcCC--eecCCCCHHHEEEecCCcccccccccccCCCCceEEECCCCccccCccccccccCCccccCcHHhhcCCC----
Confidence            7 58  999999999999986542            1225999999987653322  2357778888886643322    


Q ss_pred             hhhcCcccchheeheecccCC
Q 024842          242 LLSCGTVRVIQILMRELMFGR  262 (262)
Q Consensus       242 ~~~~~~v~~~g~~~~~l~~G~  262 (262)
                       ....|||++|+++|||++|+
T Consensus       323 -~~~~DiwSlGvil~elltG~  342 (467)
T PTZ00284        323 -MYSTDMWSMGCIIYELYTGK  342 (467)
T ss_pred             -CcHHHHHHHHHHHHHHHhCC
Confidence             12358888888888888875

>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.7e-30  Score=226.43  Aligned_cols=207  Identities=22%  Similarity=0.247  Sum_probs=169.8

Q ss_pred             CCCceeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchH-HHHHHHHH
Q 024842           17 GGGDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNE-QLEMVREE   95 (262)
Q Consensus        17 ~~~~~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~-~~~~~~~E   95 (262)
                      +....-+...+-+..+.||+|.||.||+|+-..-..                 ..+...||||..+..... ..++|++|
T Consensus       477 ~~~~~~i~r~~i~~~~eLGegaFGkVf~a~~~~l~p-----------------~~~~~lVAVK~LKd~a~~~~~~dF~RE  539 (774)
T KOG1026|consen  477 DLKVLEIPRSDIVFKEELGEGAFGKVFLAEAYGLLP-----------------GQDEQLVAVKALKDKAENQARQDFRRE  539 (774)
T ss_pred             ccceeEechhheeehhhhcCchhhhhhhhhccCCCC-----------------CccceehhHhhhcccccHHHHHHHHHH
Confidence            445556777888999999999999999998765332                 234568999999887655 67899999


Q ss_pred             HHHhhhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhc----------CCCCCHHHHHHHH
Q 024842           96 IRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTK----------KEFFSTSDVLQIF  165 (262)
Q Consensus        96 ~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~----------~~~~~~~~~~~i~  165 (262)
                      ++++..++|||||++++.+          ...+..++++||+..|+|.+++......          +.+++..+.+.++
T Consensus       540 aeLla~l~H~nIVrLlGVC----------~~~~P~~MvFEYm~~GDL~eFLra~sP~a~~~~~g~~~~~~L~~~q~L~iA  609 (774)
T KOG1026|consen  540 AELLAELQHPNIVRLLGVC----------REGDPLCMVFEYMDHGDLHEFLRARSPKADKLASGQDTPPPLSTSQFLHIA  609 (774)
T ss_pred             HHHHHhccCCCeEEEEEEE----------ccCCeeEEEEEecccccHHHHHHhhCCccccccCCCCCCCCCCHHHHHHHH
Confidence            9999999999999999998          4477899999999999999998765322          2237889999999


Q ss_pred             HHHHHHHHHHHcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccCc------------------cCcccCC
Q 024842          166 YQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKFA------------------LGQRRYS  227 (262)
Q Consensus       166 ~ql~~~l~~lH~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~~------------------~~~~~~~  227 (262)
                      .||+.|++||.++.  +|||||-+.|+||..+-    .+||+|||+++.+-+.+.                  .--..|+
T Consensus       610 ~QIAaGM~YLs~~~--FVHRDLATRNCLVge~l----~VKIsDfGLsRdiYssDYYk~~~~t~lPIRWMppEsIly~kFT  683 (774)
T KOG1026|consen  610 TQIAAGMEYLSSHH--FVHRDLATRNCLVGENL----VVKISDFGLSRDIYSSDYYKVRGNTLLPIRWMPPESILYGKFT  683 (774)
T ss_pred             HHHHHHHHHHHhCc--ccccchhhhhceeccce----EEEecccccchhhhhhhhhcccCCceeeeecCCHHHhhcCccc
Confidence            99999999999988  99999999999996555    899999999996543332                  2333567


Q ss_pred             cccchhhhhhhhhhhhhcCcccchheehe
Q 024842          228 CRNGLLSIVLHLSELLSCGTVRVIQILMR  256 (262)
Q Consensus       228 ~~~d~~s~g~~~~e~~~~~~v~~~g~~~~  256 (262)
                      ..+|+||+|+.+||+|+.|..+++|...=
T Consensus       684 teSDVWs~GVvLWEIFsyG~QPy~glSn~  712 (774)
T KOG1026|consen  684 TESDVWSFGVVLWEIFSYGKQPYYGLSNQ  712 (774)
T ss_pred             chhhhhhhhhhhhhhhccccCcccccchH
Confidence            77789999999999988888888887543

>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity

Probab=99.97  E-value=2.3e-30  Score=208.52  Aligned_cols=189  Identities=28%  Similarity=0.404  Sum_probs=148.5

Q ss_pred             eEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHH--HHHHHHHHhhhCCCC
Q 024842           28 YRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLE--MVREEIRVSSLFSHR  105 (262)
Q Consensus        28 y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~--~~~~E~~~l~~l~h~  105 (262)
                      |++.+.||+|+||.||++++..+++                      .+|+|.+.........  ....|+.+++.++||
T Consensus         1 y~~~~~lg~G~~g~v~~~~~~~~~~----------------------~~~~K~~~~~~~~~~~~~~~~~e~~~~~~l~~~   58 (260)
T PF00069_consen    1 YRLVKKLGSGGFGTVYKAKNKKNGQ----------------------KVAVKIIDKSEIEEEEREENIREIKILRRLRHP   58 (260)
T ss_dssp             EEEEEEEEEESSEEEEEEEETTTTE----------------------EEEEEEEESTTHHHHHHHHHHHHHHHHHHHTBT
T ss_pred             CEEeEEEEeCCCEEEEEEEECCCCe----------------------EEEEEEeccccccccccchhhhhhhcccccccc
Confidence            8899999999999999999987655                      6888887766544332  335589999999999


Q ss_pred             CccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeeec
Q 024842          106 NLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHN  185 (262)
Q Consensus       106 ~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~  185 (262)
                      ||+++++++.          .....+++|+++.+++|.+++.    ....+++..++.++.|++.||.+||+.+  ++|+
T Consensus        59 ~i~~~~~~~~----------~~~~~~~v~~~~~~~~L~~~l~----~~~~~~~~~~~~~~~qi~~~L~~Lh~~~--i~H~  122 (260)
T PF00069_consen   59 NIVQILDVFQ----------DDNYLYIVMEYCPGGSLQDYLQ----KNKPLSEEEILKIAYQILEALAYLHSKG--IVHR  122 (260)
T ss_dssp             TBCHEEEEEE----------ESSEEEEEEEEETTEBHHHHHH----HHSSBBHHHHHHHHHHHHHHHHHHHHTT--EEES
T ss_pred             cccccccccc----------cccccccccccccccccccccc----cccccccccccccccccccccccccccc--cccc
Confidence            9999999873          3677899999999999999887    4455899999999999999999999998  9999


Q ss_pred             CCCCCcEEEecCCCCCCceEEeeccceeecc-----ccCccCcccCCcccchhhhhhhhhhhhhcCcccchheeheeccc
Q 024842          186 DVKPGNILITCRKGQPPLAILMDFGSARPAQ-----SKFALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMF  260 (262)
Q Consensus       186 dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~-----~~~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~  260 (262)
                      ||||+||+++.++    .++|+|||.+....     .....++..|.+||-+-.    ........|+|++|+++++|++
T Consensus       123 dikp~NIl~~~~~----~~~l~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~----~~~~~~~~Di~slG~il~~l~~  194 (260)
T PF00069_consen  123 DIKPENILLDENG----EVKLIDFGSSVKLSENNENFNPFVGTPEYMAPEVLQQ----GKKYTRKSDIWSLGIILYELLT  194 (260)
T ss_dssp             SBSGGGEEESTTS----EEEESSGTTTEESTSTTSEBSSSSSSGGGSCHHHHTT----TSSBSTHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccc----ccccccccccccccccccccccccccccccccccccc----cccccccccccccccccccccc
Confidence            9999999998666    69999999997531     112345566666665430    0112223577777877777777


Q ss_pred             CC
Q 024842          261 GR  262 (262)
Q Consensus       261 G~  262 (262)
                      |+
T Consensus       195 ~~  196 (260)
T PF00069_consen  195 GK  196 (260)
T ss_dssp             SS
T ss_pred             cc
Confidence            64

Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....

>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

Probab=99.97  E-value=5.3e-30  Score=211.81  Aligned_cols=190  Identities=20%  Similarity=0.218  Sum_probs=149.6

Q ss_pred             CceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc-chHHHHHHHHHHHHhhhCCC
Q 024842           26 NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ-NNEQLEMVREEIRVSSLFSH  104 (262)
Q Consensus        26 ~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~-~~~~~~~~~~E~~~l~~l~h  104 (262)
                      ++|++.+.||+|+||.||++.+..++.                      .+++|..... ......++.+|+++++.++|
T Consensus         1 ~~~~~~~~lg~G~~g~v~~~~~~~~~~----------------------~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h   58 (308)
T cd06615           1 DDFEKLGELGAGNGGVVTKVLHRPSGL----------------------IMARKLIHLEIKPAIRNQIIRELKVLHECNS   58 (308)
T ss_pred             CCceEEeeccCCCCeEEEEEEEcCCCe----------------------EEEEEEeccccCHHHHHHHHHHHHHHHhCCC
Confidence            479999999999999999999876654                      4666665443 23344668889999999999


Q ss_pred             CCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHc-CCCCee
Q 024842          105 RNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHS-LEPPYA  183 (262)
Q Consensus       105 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~-~~~~iv  183 (262)
                      |||+++++.+.          ..+..+++|||+.+++|.+++.    ....+++..+..++.|++.||.|||+ .+  ++
T Consensus        59 ~~iv~~~~~~~----------~~~~~~lv~ey~~~~~L~~~l~----~~~~~~~~~~~~~~~~i~~~l~~lH~~~~--i~  122 (308)
T cd06615          59 PYIVGFYGAFY----------SDGEISICMEHMDGGSLDQVLK----KAGRIPENILGKISIAVLRGLTYLREKHK--IM  122 (308)
T ss_pred             CCCCeEEEEEe----------eCCEEEEEeeccCCCcHHHHHH----hcCCCCHHHHHHHHHHHHHHHHHHHhhCC--EE
Confidence            99999999873          3678999999999999999886    34568999999999999999999997 57  99


Q ss_pred             ecCCCCCcEEEecCCCCCCceEEeeccceeecccc---CccCcccCCcccchhhhhhhhhhhhhcCcccchheeheeccc
Q 024842          184 HNDVKPGNILITCRKGQPPLAILMDFGSARPAQSK---FALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMF  260 (262)
Q Consensus       184 H~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~---~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~  260 (262)
                      |+||||+||+++.++    .++|+|||++......   ...++..|.+||.+....     .....|+|++|+++++|++
T Consensus       123 H~dl~p~nil~~~~~----~~~l~dfg~~~~~~~~~~~~~~~~~~~~aPE~~~~~~-----~~~~~DiwslG~~l~~l~~  193 (308)
T cd06615         123 HRDVKPSNILVNSRG----EIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTH-----YTVQSDIWSLGLSLVEMAI  193 (308)
T ss_pred             ECCCChHHEEEecCC----cEEEccCCCcccccccccccCCCCcCccChhHhcCCC-----CCccchHHHHHHHHHHHHh
Confidence            999999999998776    6999999998765332   224556677777542211     1224688888888888887


Q ss_pred             CC
Q 024842          261 GR  262 (262)
Q Consensus       261 G~  262 (262)
                      |+
T Consensus       194 g~  195 (308)
T cd06615         194 GR  195 (308)
T ss_pred             CC
Confidence            74

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down

>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2

Probab=99.97  E-value=4.6e-30  Score=209.25  Aligned_cols=195  Identities=19%  Similarity=0.232  Sum_probs=146.3

Q ss_pred             ecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc-chHHHHHHHHHHHHhhh
Q 024842           23 INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ-NNEQLEMVREEIRVSSL  101 (262)
Q Consensus        23 ~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~-~~~~~~~~~~E~~~l~~  101 (262)
                      +..++|++.+.||+|+||.||+|++..+++...                  ..|++|..... .......+.+|+.+++.
T Consensus         4 l~~~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~------------------~~va~K~~~~~~~~~~~~~~~~e~~~l~~   65 (279)
T cd05109           4 LKETELKKVKVLGSGAFGTVYKGIWIPDGENVK------------------IPVAIKVLRENTSPKANKEILDEAYVMAG   65 (279)
T ss_pred             cchhheeeeeecCCCCCceEEEEEEecCCCccc------------------eEEEEEEecCCCCHHHHHHHHHHHHHHHh
Confidence            456789999999999999999999876554321                  14678876543 33345678889999999


Q ss_pred             CCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCC
Q 024842          102 FSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPP  181 (262)
Q Consensus       102 l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~  181 (262)
                      ++||||+++++.+.           ....+++++++++++|.+++..   ....+++..++.++.|++.||.|||+++  
T Consensus        66 ~~~~~i~~~~~~~~-----------~~~~~l~~~~~~~g~l~~~l~~---~~~~~~~~~~~~~~~qi~~~L~~lH~~~--  129 (279)
T cd05109          66 VGSPYVCRLLGICL-----------TSTVQLVTQLMPYGCLLDYVRE---NKDRIGSQDLLNWCVQIAKGMSYLEEVR--  129 (279)
T ss_pred             cCCCCCceEEEEEc-----------CCCcEEEEEcCCCCCHHHHHhh---ccCCCCHHHHHHHHHHHHHHHHHHHHCC--
Confidence            99999999998763           3457789999999999988752   2446899999999999999999999988  


Q ss_pred             eeecCCCCCcEEEecCCCCCCceEEeeccceeeccccCc-------cCcccCCcccchhhhhhhhhhhhhcCcccchhee
Q 024842          182 YAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKFA-------LGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQIL  254 (262)
Q Consensus       182 ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~~-------~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~  254 (262)
                      ++||||||+||+++.++    .+||+|||++........       ..+..|++||.+..-.     .....|+|++|++
T Consensus       130 iiH~dlkp~Nil~~~~~----~~kL~dfG~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~-----~~~~~Di~slG~~  200 (279)
T cd05109         130 LVHRDLAARNVLVKSPN----HVKITDFGLARLLDIDETEYHADGGKVPIKWMALESILHRR-----FTHQSDVWSYGVT  200 (279)
T ss_pred             eeccccccceEEEcCCC----cEEECCCCceeecccccceeecCCCccchhhCCHHHhccCC-----CCchhHHHHHHHH
Confidence            99999999999997766    699999999986643221       1233466666442211     1123466666666


Q ss_pred             heeccc
Q 024842          255 MRELMF  260 (262)
Q Consensus       255 ~~~l~~  260 (262)
                      +|||++
T Consensus       201 l~el~t  206 (279)
T cd05109         201 VWELMT  206 (279)
T ss_pred             HHHHHc
Confidence            666654

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve

>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3

Probab=99.97  E-value=3.4e-30  Score=210.04  Aligned_cols=195  Identities=18%  Similarity=0.237  Sum_probs=143.4

Q ss_pred             ecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc-hHHHHHHHHHHHHhhh
Q 024842           23 INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN-NEQLEMVREEIRVSSL  101 (262)
Q Consensus        23 ~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~-~~~~~~~~~E~~~l~~  101 (262)
                      +..++|++.+.||+|+||.||+|.+..+++..+.                  .+++|...... ......+..|+..++.
T Consensus         4 ~~~~~~~~~~~lg~G~~~~vy~~~~~~~~~~~~~------------------~~~~k~~~~~~~~~~~~~~~~~~~~l~~   65 (279)
T cd05111           4 LKETELRKLKLLGSGVFGTVHKGIWIPEGDSIKI------------------PVAIKTIQDRSGRQTFQEITDHMLAMGS   65 (279)
T ss_pred             CCHhhceeccccCccCCcceEEEEEcCCCCceee------------------EEEEeecccccchHHHHHHHHHHHHHhc
Confidence            3457899999999999999999998766553222                  36777665432 2334667788888999


Q ss_pred             CCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCC
Q 024842          102 FSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPP  181 (262)
Q Consensus       102 l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~  181 (262)
                      ++||||+++++++.           ....+++++++.+++|.+++..   ....+++..++.++.|++.||.|||+.+  
T Consensus        66 l~h~~iv~~~~~~~-----------~~~~~~i~e~~~~gsL~~~l~~---~~~~~~~~~~~~i~~qi~~~l~~lH~~~--  129 (279)
T cd05111          66 LDHAYIVRLLGICP-----------GASLQLVTQLSPLGSLLDHVRQ---HRDSLDPQRLLNWCVQIAKGMYYLEEHR--  129 (279)
T ss_pred             CCCCCcceEEEEEC-----------CCccEEEEEeCCCCcHHHHHHh---cccCCCHHHHHHHHHHHHHHHHHHHHCC--
Confidence            99999999998752           3447889999999999998863   3345899999999999999999999988  


Q ss_pred             eeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-------ccCcccCCcccchhhhhhhhhhhhhcCcccchhee
Q 024842          182 YAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-------ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQIL  254 (262)
Q Consensus       182 ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-------~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~  254 (262)
                      ++|+||||+||+++.++    .+||+|||++.......       ..++..|.+||.+...     .....+|+||+|++
T Consensus       130 iiH~dlkp~nili~~~~----~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~-----~~~~~~Dv~slG~i  200 (279)
T cd05111         130 MVHRNLAARNILLKSDS----IVQIADFGVADLLYPDDKKYFYSEHKTPIKWMALESILFG-----RYTHQSDVWSYGVT  200 (279)
T ss_pred             EeccccCcceEEEcCCC----cEEEcCCccceeccCCCcccccCCCCCcccccCHHHhccC-----CcCchhhHHHHHHH
Confidence            99999999999998765    69999999997653221       1223345555533111     11123566666666


Q ss_pred             heeccc
Q 024842          255 MRELMF  260 (262)
Q Consensus       255 ~~~l~~  260 (262)
                      +||+++
T Consensus       201 l~el~t  206 (279)
T cd05111         201 VWEMMS  206 (279)
T ss_pred             HHHHHc
Confidence            666654

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r

>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

Probab=99.97  E-value=1.1e-29  Score=204.70  Aligned_cols=189  Identities=25%  Similarity=0.309  Sum_probs=150.7

Q ss_pred             ceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc---chHHHHHHHHHHHHhhhCC
Q 024842           27 RYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ---NNEQLEMVREEIRVSSLFS  103 (262)
Q Consensus        27 ~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~---~~~~~~~~~~E~~~l~~l~  103 (262)
                      +|++.+.||.|+||.||+|.+..+++                      .+++|.+...   .....+.+.+|+++++.++
T Consensus         1 ~y~~~~~i~~g~~~~v~~~~~~~~~~----------------------~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~   58 (258)
T cd05578           1 HFELLRVIGKGAFGKVCIVQKRDTKK----------------------MFAMKYMNKQKCVEKGSVRNVLNERRILQELN   58 (258)
T ss_pred             CceEEEEeccCCCceEEEEEEccCCc----------------------EEEEEEEehhhhcchhHHHHHHHHHHHHHhCC
Confidence            58999999999999999999876655                      5677766433   2234577889999999999


Q ss_pred             CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCee
Q 024842          104 HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYA  183 (262)
Q Consensus       104 h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~iv  183 (262)
                      ||||++++..+          ......+++++|+.+++|.+++.    ....+++..++.++.|++.||.|||+++  ++
T Consensus        59 h~~i~~~~~~~----------~~~~~~~lv~e~~~~~~L~~~l~----~~~~l~~~~~~~~~~~i~~~l~~lh~~~--i~  122 (258)
T cd05578          59 HPFLVNLWYSF----------QDEENMYLVVDLLLGGDLRYHLS----QKVKFSEEQVKFWICEIVLALEYLHSKG--II  122 (258)
T ss_pred             CCChHHHHHhh----------cCCCeEEEEEeCCCCCCHHHHHH----hcCCcCHHHHHHHHHHHHHHHHHHHhCC--ee
Confidence            99999999887          44667999999999999998886    3356899999999999999999999998  99


Q ss_pred             ecCCCCCcEEEecCCCCCCceEEeeccceeeccccC----ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecc
Q 024842          184 HNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELM  259 (262)
Q Consensus       184 H~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~  259 (262)
                      |+||+|+||+++.++    .++|+|||.+.......    ..+...|.+||.+..-.     ....+|+|++|+++|+|+
T Consensus       123 h~dl~~~nil~~~~~----~~~l~d~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~-----~~~~~Di~slG~~l~~l~  193 (258)
T cd05578         123 HRDIKPDNILLDEQG----HVHITDFNIATKVTPDTLTTSTSGTPGYMAPEVLCRQG-----YSVAVDWWSLGVTAYECL  193 (258)
T ss_pred             ccCCCHHHeEEcCCC----CEEEeecccccccCCCccccccCCChhhcCHHHHcccC-----CCCcccchhhHHHHHHHH
Confidence            999999999998776    69999999988765431    23445566666443221     223478888888888888


Q ss_pred             cCC
Q 024842          260 FGR  262 (262)
Q Consensus       260 ~G~  262 (262)
                      +|+
T Consensus       194 ~g~  196 (258)
T cd05578         194 RGK  196 (258)
T ss_pred             hCC
Confidence            774

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.

>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=7e-30  Score=206.03  Aligned_cols=195  Identities=18%  Similarity=0.281  Sum_probs=154.2

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCCC
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSH  104 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~h  104 (262)
                      .++|++.+.||.|++|.||+|.+..+++                      .+++|.+........+.+.+|+.+++.++|
T Consensus         2 ~~~~~~~~~l~~g~~~~v~~~~~~~~~~----------------------~~~ik~~~~~~~~~~~~~~~e~~~l~~~~h   59 (262)
T cd06613           2 QEDYELIQRIGSGTYGDVYKARDIATGE----------------------LVAIKVIKLEPGDDFEIIQQEISMLKECRH   59 (262)
T ss_pred             ccceEEEEEecCCCceEEEEeEecCCCC----------------------EEEEEEEEcCchhhHHHHHHHHHHHHhCCC
Confidence            5789999999999999999999876544                      678887776655566788999999999999


Q ss_pred             CCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeee
Q 024842          105 RNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAH  184 (262)
Q Consensus       105 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH  184 (262)
                      ||++++++.+          ......+++||++.+++|.+++..   ....+++..++.++.|++.||.|||+.+  ++|
T Consensus        60 ~~i~~~~~~~----------~~~~~~~l~~e~~~~~~l~~~~~~---~~~~l~~~~~~~~~~ql~~~l~~lh~~~--i~h  124 (262)
T cd06613          60 PNIVAYFGSY----------LRRDKLWIVMEYCGGGSLQDIYQV---TRGPLSELQIAYVCRETLKGLAYLHETG--KIH  124 (262)
T ss_pred             CChhceEEEE----------EeCCEEEEEEeCCCCCcHHHHHHh---hccCCCHHHHHHHHHHHHHHHHHHHhCC--cee
Confidence            9999999877          335679999999999999988763   2256999999999999999999999998  999


Q ss_pred             cCCCCCcEEEecCCCCCCceEEeeccceeeccccC-----ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecc
Q 024842          185 NDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELM  259 (262)
Q Consensus       185 ~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~  259 (262)
                      +||+|+||+++.++    .++|+|||++.......     ..++..|.+||.+....-  ......+|+|++|+++++|+
T Consensus       125 ~dl~p~ni~i~~~~----~~~l~d~g~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~~~~--~~~~~~~Di~slG~~l~~~~  198 (262)
T cd06613         125 RDIKGANILLTEDG----DVKLADFGVSAQLTATIAKRKSFIGTPYWMAPEVAAVERK--GGYDGKCDIWALGITAIELA  198 (262)
T ss_pred             cCCChhhEEECCCC----CEEECccccchhhhhhhhccccccCCccccCchhhccccc--CCcCchhhhHHHHHHHHHHH
Confidence            99999999998776    69999999987654321     234555666665432200  01112368888888888888


Q ss_pred             cCC
Q 024842          260 FGR  262 (262)
Q Consensus       260 ~G~  262 (262)
                      +|+
T Consensus       199 tg~  201 (262)
T cd06613         199 ELQ  201 (262)
T ss_pred             hCC
Confidence            874

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ

>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

Probab=99.97  E-value=1e-29  Score=205.70  Aligned_cols=193  Identities=24%  Similarity=0.355  Sum_probs=148.5

Q ss_pred             CceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhc---cchHHHHHHHHHHHHhhhC
Q 024842           26 NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLI---QNNEQLEMVREEIRVSSLF  102 (262)
Q Consensus        26 ~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~---~~~~~~~~~~~E~~~l~~l  102 (262)
                      ++|++.+.||+|++|.||+|.+..+++                      .+++|.+..   ......+.+.+|+.+++.+
T Consensus         2 ~~y~~~~~lg~g~~~~v~~~~~~~~~~----------------------~~~ik~~~~~~~~~~~~~~~~~~ei~~l~~~   59 (267)
T cd08224           2 GNFKIEKKIGKGQFSVVYKAICLLDGR----------------------VVALKKVQIFEMMDAKARQDCLKEIDLLKQL   59 (267)
T ss_pred             CceeeeeeeccCCceEEEEEEEcCCCC----------------------EEEEEEeecccccchhhHHHHHHHHHHHHhC
Confidence            589999999999999999999876554                      567775542   2333456788999999999


Q ss_pred             CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCe
Q 024842          103 SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPY  182 (262)
Q Consensus       103 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~i  182 (262)
                      +|+|++++++.+.          ..+..+++|||+.+++|.+++.........+++..++.++.+++.||.|||+.+  +
T Consensus        60 ~~~~i~~~~~~~~----------~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~--i  127 (267)
T cd08224          60 DHPNVIKYLASFI----------ENNELNIVLELADAGDLSRMIKHFKKQKRLIPERTIWKYFVQLCSALEHMHSKR--I  127 (267)
T ss_pred             CCCCeeeeeeeee----------cCCeEEEEEecCCCCCHHHHHHHhcccCCCcCHHHHHHHHHHHHHHHHHHHhCC--E
Confidence            9999999999874          356789999999999999988755444566899999999999999999999998  9


Q ss_pred             eecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-----ccCcccCCcccchhhhhhhhhhhhhcCcccchheehee
Q 024842          183 AHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRE  257 (262)
Q Consensus       183 vH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~  257 (262)
                      +|+||+|+||+++.++    .++|+|||++.......     ..++..|.+||.+....     .....|+|++|+++++
T Consensus       128 ~h~dl~p~nil~~~~~----~~~l~d~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~-----~~~~~Di~slG~il~~  198 (267)
T cd08224         128 MHRDIKPANVFITATG----VVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPERIHENG-----YNFKSDIWSLGCLLYE  198 (267)
T ss_pred             ecCCcChhhEEECCCC----cEEEeccceeeeccCCCcccceecCCccccCHHHhccCC-----CCchhcHHHHHHHHHH
Confidence            9999999999998766    69999999987654322     23444565665332211     1123566666666666


Q ss_pred             cccC
Q 024842          258 LMFG  261 (262)
Q Consensus       258 l~~G  261 (262)
                      |++|
T Consensus       199 l~~g  202 (267)
T cd08224         199 MAAL  202 (267)
T ss_pred             HHHC
Confidence            6655

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=99.97  E-value=1.1e-29  Score=215.24  Aligned_cols=203  Identities=22%  Similarity=0.270  Sum_probs=146.8

Q ss_pred             ceeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc-chHHHHHHHHHHHH
Q 024842           20 DVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ-NNEQLEMVREEIRV   98 (262)
Q Consensus        20 ~~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~-~~~~~~~~~~E~~~   98 (262)
                      ...+..++|++.+.||+|+||.||+|++......                 .....+|+|++... .....+.+.+|+.+
T Consensus        29 ~~~~~~~~~~~~~~LG~G~fG~V~~~~~~~~~~~-----------------~~~~~vavK~l~~~~~~~~~~~~~~Ei~i   91 (375)
T cd05104          29 KWEFPRNRLSFGKTLGAGAFGKVVEATAYGLFKS-----------------DAAMTVAVKMLKPSAHLTEREALMSELKV   91 (375)
T ss_pred             ccccchHHeehhheecCCccceEEEEEEeccccC-----------------ccceeEEEEeccCCcCcHHHHHHHHHHHH
Confidence            3445567899999999999999999986432110                 12346888877543 23345678899999


Q ss_pred             hhhC-CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhh--------------------------
Q 024842           99 SSLF-SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQT--------------------------  151 (262)
Q Consensus        99 l~~l-~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~--------------------------  151 (262)
                      ++.+ +||||+++++.+          ...+..+++|||+.+|+|.+++.....                          
T Consensus        92 l~~l~~HpnIv~l~~~~----------~~~~~~~lv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (375)
T cd05104          92 LSYLGNHINIVNLLGAC----------TVGGPTLVITEYCCYGDLLNFLRRKRDSFICPKHEDHAEAALYKNLLHQREMS  161 (375)
T ss_pred             HHHhcCCcceeeeeeee----------ccCCcceeeehhccCCcHHHHHHhcccccccccccchhhhHHHHhhhhhhccc
Confidence            9999 899999999987          336678999999999999988853211                          


Q ss_pred             ---------------------------------------------cCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeeecC
Q 024842          152 ---------------------------------------------KKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHND  186 (262)
Q Consensus       152 ---------------------------------------------~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~d  186 (262)
                                                                   ....+++..++.++.|++.||.|||+.+  ++|||
T Consensus       162 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~--ivH~D  239 (375)
T cd05104         162 CDSLNEYMDMKPGVSYVVPTKADKRRSVRSGSYIDQDVTSEILEEDELALDTEDLLSFSYQVAKGMSFLASKN--CIHRD  239 (375)
T ss_pred             chhhhhhhhcCCCcccccccccccccccccceecccccHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCC--eeccC
Confidence                                                         1124788899999999999999999988  99999


Q ss_pred             CCCCcEEEecCCCCCCceEEeeccceeeccccCc-------cCcccCCcccchhhhhhhhhhhhhcCcccchheeheecc
Q 024842          187 VKPGNILITCRKGQPPLAILMDFGSARPAQSKFA-------LGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELM  259 (262)
Q Consensus       187 ikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~~-------~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~  259 (262)
                      |||+|||++.++    .+||+|||++........       ..+..|.+||.+....     .....|+||+|+++++|+
T Consensus       240 lkp~Nill~~~~----~~kl~DfG~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-----~~~~sDi~slG~~l~ell  310 (375)
T cd05104         240 LAARNILLTHGR----ITKICDFGLARDIRNDSNYVVKGNARLPVKWMAPESIFNCV-----YTFESDVWSYGILLWEIF  310 (375)
T ss_pred             CchhhEEEECCC----cEEEecCccceeccCcccccccCCCCCCcceeChhHhcCCC-----CCCCCCHHHHHHHHHHHH
Confidence            999999998665    699999999976543221       1223466665432111     112356666666666655


Q ss_pred             c
Q 024842          260 F  260 (262)
Q Consensus       260 ~  260 (262)
                      +
T Consensus       311 t  311 (375)
T cd05104         311 S  311 (375)
T ss_pred             h
Confidence            4

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

Probab=99.97  E-value=5e-30  Score=209.69  Aligned_cols=198  Identities=20%  Similarity=0.281  Sum_probs=149.0

Q ss_pred             CceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc-chHHHHHHHHHHHHhhhCCC
Q 024842           26 NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ-NNEQLEMVREEIRVSSLFSH  104 (262)
Q Consensus        26 ~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~-~~~~~~~~~~E~~~l~~l~h  104 (262)
                      ++|++.+.||+|+||.||++.+..+++                      .+++|.+... .......+.+|+.+++.++|
T Consensus         1 ~~~~~~~~ig~g~~g~v~~~~~~~~~~----------------------~~a~k~~~~~~~~~~~~~~~~e~~~l~~~~~   58 (286)
T cd06622           1 DEIEVLDELGKGNYGSVYKVLHRPTGV----------------------TMAMKEIRLELDESKFNQIIMELDILHKAVS   58 (286)
T ss_pred             ChhhhhhhhcccCCeEEEEEEEcCCCc----------------------EEEEEEeecccCHHHHHHHHHHHHHHHhcCC
Confidence            478999999999999999999876544                      6777766543 33344678899999999999


Q ss_pred             CCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHc-CCCCee
Q 024842          105 RNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHS-LEPPYA  183 (262)
Q Consensus       105 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~-~~~~iv  183 (262)
                      |||+++++.+.          .....+++|||+.+++|..++.... ....+++..+..++.|++.||.|||+ .+  ++
T Consensus        59 ~~i~~~~~~~~----------~~~~~~lv~e~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~i~~~l~~LH~~~~--i~  125 (286)
T cd06622          59 PYIVDFYGAFF----------IEGAVYMCMEYMDAGSLDKLYAGGV-ATEGIPEDVLRRITYAVVKGLKFLKEEHN--II  125 (286)
T ss_pred             CcHHhhhhhee----------cCCeEEEEEeecCCCCHHHHHHhcc-ccCCCCHHHHHHHHHHHHHHHHHHHhcCC--Ee
Confidence            99999999873          3678999999999999988775211 12368999999999999999999996 47  99


Q ss_pred             ecCCCCCcEEEecCCCCCCceEEeeccceeeccccC---ccCcccCCcccchhhhhhh-hhhhhhcCcccchheeheecc
Q 024842          184 HNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF---ALGQRRYSCRNGLLSIVLH-LSELLSCGTVRVIQILMRELM  259 (262)
Q Consensus       184 H~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~---~~~~~~~~~~~d~~s~g~~-~~e~~~~~~v~~~g~~~~~l~  259 (262)
                      |+||||+||+++.++    .++|+|||++.......   ..++..|.+||.+...... ........|+|++|+++++|+
T Consensus       126 H~dl~p~nil~~~~~----~~~l~dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~~l~  201 (286)
T cd06622         126 HRDVKPTNVLVNGNG----QVKLCDFGVSGNLVASLAKTNIGCQSYMAPERIKSGGPNQNPTYTVQSDVWSLGLSILEMA  201 (286)
T ss_pred             eCCCCHHHEEECCCC----CEEEeecCCcccccCCccccCCCccCccCcchhcCCCCCccCCCCcccchHhHHHHHHHHH
Confidence            999999999998765    69999999987653322   2344556666654322211 111223467777777777777


Q ss_pred             cCC
Q 024842          260 FGR  262 (262)
Q Consensus       260 ~G~  262 (262)
                      +|+
T Consensus       202 ~g~  204 (286)
T cd06622         202 LGR  204 (286)
T ss_pred             hCC
Confidence            764

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

Probab=99.97  E-value=2.6e-30  Score=217.79  Aligned_cols=195  Identities=23%  Similarity=0.334  Sum_probs=148.0

Q ss_pred             cCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc--chHHHHHHHHHHHHhhh
Q 024842           24 NENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ--NNEQLEMVREEIRVSSL  101 (262)
Q Consensus        24 ~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~--~~~~~~~~~~E~~~l~~  101 (262)
                      ..++|++.+.||+|+||.||++.+..+++                      .+++|++...  .......+.+|+.+++.
T Consensus        15 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~----------------------~vaiK~~~~~~~~~~~~~~~~~E~~~l~~   72 (355)
T cd07874          15 VLKRYQNLKPIGSGAQGIVCAAYDAVLDR----------------------NVAIKKLSRPFQNQTHAKRAYRELVLMKC   72 (355)
T ss_pred             hhhceeEEEEeeecCCEEEEEEEecCCCc----------------------eEEEEEeCCcccChHHHHHHHHHHHHHHH
Confidence            45799999999999999999999876654                      5777766543  33345677789999999


Q ss_pred             CCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCC
Q 024842          102 FSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPP  181 (262)
Q Consensus       102 l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~  181 (262)
                      ++||||+++++++....    ........+++||++.+ ++.+.+.      ..+++..++.++.|++.||.|||+.+  
T Consensus        73 l~h~niv~~~~~~~~~~----~~~~~~~~~lv~e~~~~-~l~~~~~------~~l~~~~~~~~~~qi~~aL~~LH~~g--  139 (355)
T cd07874          73 VNHKNIISLLNVFTPQK----SLEEFQDVYLVMELMDA-NLCQVIQ------MELDHERMSYLLYQMLCGIKHLHSAG--  139 (355)
T ss_pred             hCCCchhceeeeeeccc----cccccceeEEEhhhhcc-cHHHHHh------hcCCHHHHHHHHHHHHHHHHHHHhCC--
Confidence            99999999998874210    01123457999998865 5655543      23889999999999999999999998  


Q ss_pred             eeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC----ccCcccCCcccchhhhhhhhhhhhhcCcccchheehee
Q 024842          182 YAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRE  257 (262)
Q Consensus       182 ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~  257 (262)
                      |+||||||+||+++.++    .+||+|||++.......    ..++..|.+||.+...+     .....|+||+|+++|+
T Consensus       140 ivHrDikp~Nill~~~~----~~kl~Dfg~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~-----~~~~~DiwslG~il~e  210 (355)
T cd07874         140 IIHRDLKPSNIVVKSDC----TLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMG-----YKENVDIWSVGCIMGE  210 (355)
T ss_pred             cccCCCChHHEEECCCC----CEEEeeCcccccCCCccccCCccccCCccCHHHHcCCC-----CCchhhHHHHHHHHHH
Confidence            99999999999998776    69999999998654432    24667778877653322     1234688888888888


Q ss_pred             cccCC
Q 024842          258 LMFGR  262 (262)
Q Consensus       258 l~~G~  262 (262)
                      |++|+
T Consensus       211 l~~g~  215 (355)
T cd07874         211 MVRHK  215 (355)
T ss_pred             HHhCC
Confidence            87774

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok

>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

Probab=99.97  E-value=1.6e-29  Score=203.27  Aligned_cols=191  Identities=26%  Similarity=0.410  Sum_probs=152.7

Q ss_pred             ceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc-chHHHHHHHHHHHHhhhCCCC
Q 024842           27 RYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ-NNEQLEMVREEIRVSSLFSHR  105 (262)
Q Consensus        27 ~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~-~~~~~~~~~~E~~~l~~l~h~  105 (262)
                      +|++.+.||.|+||.||++.+..+++                      .+++|.+... .....+.+.+|+.+++.++|+
T Consensus         1 ~y~~~~~lg~g~~g~v~~~~~~~~~~----------------------~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~   58 (255)
T cd08219           1 QYNVLRVVGEGSFGRALLVQHVNSDQ----------------------KYAMKEIRLPKSSSAVEDSRKEAVLLAKMKHP   58 (255)
T ss_pred             CceEEEEeeccCCeEEEEEEEcCCCc----------------------eEEEEEEEcCcchHHHHHHHHHHHHHHhCCCC
Confidence            58999999999999999999876654                      6777766433 333456778899999999999


Q ss_pred             CccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeeec
Q 024842          106 NLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHN  185 (262)
Q Consensus       106 ~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~  185 (262)
                      |++++++.+          ......+++|+|+.+++|.+++..  .....+++..++.++.|++.||.+||+++  ++|+
T Consensus        59 ~i~~~~~~~----------~~~~~~~lv~e~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~i~~al~~lH~~~--i~H~  124 (255)
T cd08219          59 NIVAFKESF----------EADGHLYIVMEYCDGGDLMQKIKL--QRGKLFPEDTILQWFVQMCLGVQHIHEKR--VLHR  124 (255)
T ss_pred             CcceEEEEE----------EECCEEEEEEeeCCCCcHHHHHHh--ccCCCCCHHHHHHHHHHHHHHHHHHhhCC--cccC
Confidence            999999887          346789999999999999887752  23345899999999999999999999998  9999


Q ss_pred             CCCCCcEEEecCCCCCCceEEeeccceeeccccC-----ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheeccc
Q 024842          186 DVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMF  260 (262)
Q Consensus       186 dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~  260 (262)
                      ||||+||+++.++    .++|+|||++.......     ..++..|.+||......     .....|+|++|+++++|++
T Consensus       125 dl~p~nili~~~~----~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~-----~~~~~Dv~slG~i~~~l~~  195 (255)
T cd08219         125 DIKSKNIFLTQNG----KVKLGDFGSARLLTSPGAYACTYVGTPYYVPPEIWENMP-----YNNKSDIWSLGCILYELCT  195 (255)
T ss_pred             CCCcceEEECCCC----cEEEcccCcceeecccccccccccCCccccCHHHHccCC-----cCchhhhhhhchhheehhh
Confidence            9999999998766    69999999997664322     24556677777543321     2234789999999999988


Q ss_pred             CC
Q 024842          261 GR  262 (262)
Q Consensus       261 G~  262 (262)
                      |+
T Consensus       196 g~  197 (255)
T cd08219         196 LK  197 (255)
T ss_pred             cc
Confidence            74

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati

>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

Probab=99.97  E-value=1.2e-29  Score=207.51  Aligned_cols=205  Identities=20%  Similarity=0.225  Sum_probs=153.3

Q ss_pred             cCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhC-
Q 024842           24 NENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLF-  102 (262)
Q Consensus        24 ~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l-  102 (262)
                      ..++|++.+.||+|+||.||++.+..+++                      .+++|....... ....+..|+.+++.+ 
T Consensus        16 ~~~~~~~~~~lg~g~~~~vy~~~~~~~~~----------------------~~~ik~~~~~~~-~~~~~~~e~~~l~~l~   72 (286)
T cd06638          16 PSDTWEIIETIGKGTYGKVFKVLNKKNGS----------------------KAAVKILDPIHD-IDEEIEAEYNILKALS   72 (286)
T ss_pred             cccceeeeeeeccCCCcEEEEEEECCCCc----------------------eeEEEeeccccc-hHHHHHHHHHHHHHHh
Confidence            46799999999999999999999876654                      567776543222 235677899999888 


Q ss_pred             CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCe
Q 024842          103 SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPY  182 (262)
Q Consensus       103 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~i  182 (262)
                      +|||++++++.+...     ........+++|||+.+++|.+++.........+++..++.++.|++.||.|||+.+  +
T Consensus        73 ~h~~i~~~~~~~~~~-----~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~--i  145 (286)
T cd06638          73 DHPNVVKFYGMYYKK-----DVKNGDQLWLVLELCNGGSVTDLVKGFLKRGERMEEPIIAYILHEALMGLQHLHVNK--T  145 (286)
T ss_pred             cCCCeeeeeeeeeec-----ccCCCCeEEEEEeecCCCCHHHHHHHhhccCccccHHHHHHHHHHHHHHHHHHHhCC--c
Confidence            699999999876310     112345689999999999999987654444556899999999999999999999988  9


Q ss_pred             eecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-----ccCcccCCcccchhhhhhhhhhhhhcCcccchheehee
Q 024842          183 AHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRE  257 (262)
Q Consensus       183 vH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~  257 (262)
                      +||||||+||+++.++    .++|+|||++.......     ..++..|.+||.+..............|+|++|+++++
T Consensus       146 ~H~dlkp~nili~~~~----~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGvi~~e  221 (286)
T cd06638         146 IHRDVKGNNILLTTEG----GVKLVDFGVSAQLTSTRLRRNTSVGTPFWMAPEVIACEQQLDSTYDARCDVWSLGITAIE  221 (286)
T ss_pred             cccCCCHHhEEECCCC----CEEEccCCceeecccCCCccccccCCCcccChhhhchhhhccccccchhhhhhHHHHHHH
Confidence            9999999999998776    69999999998654322     23556677776543211111111224688888888888


Q ss_pred             cccCC
Q 024842          258 LMFGR  262 (262)
Q Consensus       258 l~~G~  262 (262)
                      |++|+
T Consensus       222 l~~g~  226 (286)
T cd06638         222 LGDGD  226 (286)
T ss_pred             HhcCC
Confidence            87774

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear

>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

Probab=99.97  E-value=2.5e-29  Score=214.16  Aligned_cols=167  Identities=20%  Similarity=0.268  Sum_probs=133.7

Q ss_pred             CCCceeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc-hHHHHHHHHH
Q 024842           17 GGGDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN-NEQLEMVREE   95 (262)
Q Consensus        17 ~~~~~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~-~~~~~~~~~E   95 (262)
                      .++...++.++|.+.+.||+|+||.||+|++.......                 ....||+|++.... ....+.+.+|
T Consensus        28 ~~~~~~~~~~~~~~~~~LG~G~fG~Vy~~~~~~~~~~~-----------------~~~~vavK~l~~~~~~~~~~~~~~E   90 (400)
T cd05105          28 YDSRWEFPRDGLVLGRILGSGAFGKVVEGTAYGLSRSQ-----------------PVMKVAVKMLKPTARSSEKQALMSE   90 (400)
T ss_pred             CCCceeccccceehhheecCCCCceEEEEEEcccCCCC-----------------CceEEEEEecCCCCChHHHHHHHHH
Confidence            34566677889999999999999999999976443210                 12358888876543 3345678899


Q ss_pred             HHHhhhCC-CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhh-----------------------
Q 024842           96 IRVSSLFS-HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQT-----------------------  151 (262)
Q Consensus        96 ~~~l~~l~-h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~-----------------------  151 (262)
                      +.+++.+. ||||+++++++          ...+..|++|||+.+++|.+++.....                       
T Consensus        91 i~~l~~l~~HpnIv~l~~~~----------~~~~~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (400)
T cd05105          91 LKIMTHLGPHLNIVNLLGAC----------TKSGPIYIITEYCFYGDLVNYLHKNRDNFLSRHPEKPKKDLDIFGINPAD  160 (400)
T ss_pred             HHHHHhcCCCCCeeeEEEEE----------ccCCceEEEEEecCCCcHHHHHHHhhhhhhccccccccccccccCCCccc
Confidence            99999996 99999999988          335679999999999999988754211                       


Q ss_pred             ---------------------------------------------------------------------cCCCCCHHHHH
Q 024842          152 ---------------------------------------------------------------------KKEFFSTSDVL  162 (262)
Q Consensus       152 ---------------------------------------------------------------------~~~~~~~~~~~  162 (262)
                                                                                           ....+++..++
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~  240 (400)
T cd05105         161 ESTRSYVILSFENKGDYMDMKQADTTQYVPMLEIKEASKYSDIQRSNYDRPASYKGSNDSEVKNLLSDDGSEGLTTLDLL  240 (400)
T ss_pred             ccccchhhhhhcccccccccccccccccchhhhhhhhhhhhhcccCcccccccccCcchhhHHHHHHhcccCCCCHHHHH
Confidence                                                                                 01247888899


Q ss_pred             HHHHHHHHHHHHHHcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeecc
Q 024842          163 QIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQ  216 (262)
Q Consensus       163 ~i~~ql~~~l~~lH~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~  216 (262)
                      .++.|++.||.|||+.+  ++|+||||+||+++.++    .+||+|||++....
T Consensus       241 ~~~~qi~~aL~~LH~~~--ivH~dikp~Nill~~~~----~~kL~DfGla~~~~  288 (400)
T cd05105         241 SFTYQVARGMEFLASKN--CVHRDLAARNVLLAQGK----IVKICDFGLARDIM  288 (400)
T ss_pred             HHHHHHHHHHHHHHhCC--eeCCCCChHhEEEeCCC----EEEEEeCCcceecc
Confidence            99999999999999988  99999999999998766    69999999987653

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-

>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.97  E-value=5.5e-30  Score=209.18  Aligned_cols=195  Identities=22%  Similarity=0.279  Sum_probs=144.9

Q ss_pred             Cce-EEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc-hHHHHHHHHHHHHhhhCC
Q 024842           26 NRY-RILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN-NEQLEMVREEIRVSSLFS  103 (262)
Q Consensus        26 ~~y-~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~-~~~~~~~~~E~~~l~~l~  103 (262)
                      ++| ++.+.||+|+||.||++.......                  .++..+++|...... ......+.+|+.+++.++
T Consensus         3 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~------------------~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~   64 (283)
T cd05080           3 KRYLKKIRVLGEGHFGKVSLYCYDPAND------------------GTGEMVAVKTLKRECGQQNTSGWKKEINILKTLY   64 (283)
T ss_pred             hhhceeceecccCCCcEEEEeeEccccC------------------CCCceEEEEEeccccChHHHHHHHHHHHHHHhCC
Confidence            345 999999999999999876432211                  134578888776543 234567788999999999


Q ss_pred             CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCee
Q 024842          104 HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYA  183 (262)
Q Consensus       104 h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~iv  183 (262)
                      ||||+++++.+..        ......+++|||+.+++|.+++.     ...+++..++.++.|++.||.|||+++  ++
T Consensus        65 h~~i~~~~~~~~~--------~~~~~~~lv~e~~~~~~l~~~~~-----~~~l~~~~~~~i~~~l~~~l~~lH~~~--i~  129 (283)
T cd05080          65 HENIVKYKGCCSE--------QGGKGLQLIMEYVPLGSLRDYLP-----KHKLNLAQLLLFAQQICEGMAYLHSQH--YI  129 (283)
T ss_pred             CCCEeeEEEEEec--------CCCceEEEEecCCCCCCHHHHHH-----HcCCCHHHHHHHHHHHHHHHHHHHHCC--ee
Confidence            9999999987631        22345889999999999998875     234899999999999999999999998  99


Q ss_pred             ecCCCCCcEEEecCCCCCCceEEeeccceeeccccCc--------cCcccCCcccchhhhhhhhhhhhhcCcccchheeh
Q 024842          184 HNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKFA--------LGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILM  255 (262)
Q Consensus       184 H~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~~--------~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~  255 (262)
                      |+||||+||+++.++    .++|+|||++........        .+...|.+||.+..     .+....+|+||+|+++
T Consensus       130 H~dlkp~Nili~~~~----~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~-----~~~~~~~Di~slG~~l  200 (283)
T cd05080         130 HRDLAARNVLLDNDR----LVKIGDFGLAKAVPEGHEYYRVREDGDSPVFWYAVECLKE-----NKFSYASDVWSFGVTL  200 (283)
T ss_pred             ccccChheEEEcCCC----cEEEeecccccccCCcchhhccCCCCCCCceeeCHhHhcc-----cCCCcccccHHHHHHH
Confidence            999999999998766    699999999986543221        12233455553321     1222346788888888


Q ss_pred             eecccCC
Q 024842          256 RELMFGR  262 (262)
Q Consensus       256 ~~l~~G~  262 (262)
                      ++|++|+
T Consensus       201 ~el~tg~  207 (283)
T cd05080         201 YELLTHC  207 (283)
T ss_pred             HHHHhCC
Confidence            8877763

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign

>KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.97  E-value=2.8e-30  Score=215.17  Aligned_cols=205  Identities=24%  Similarity=0.357  Sum_probs=165.9

Q ss_pred             cCCCCCceeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc--chHHHHH
Q 024842           14 SVNGGGDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ--NNEQLEM   91 (262)
Q Consensus        14 ~~~~~~~~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~--~~~~~~~   91 (262)
                      +.+...-+.+.+..|+++++||+||.+.||++...                       +.+.|++|++...  +.+..+.
T Consensus       349 ~~~~~~~i~Vkg~~Yeilk~iG~GGSSkV~kV~~s-----------------------~~~iyalkkv~~~~~D~qtl~g  405 (677)
T KOG0596|consen  349 SSSANEIIKVKGREYEILKQIGSGGSSKVFKVLNS-----------------------DKQIYALKKVVLLEADNQTLDG  405 (677)
T ss_pred             CCCcCeeEEECcchhhHHHhhcCCCcceeeeeecC-----------------------CCcchhhhHHHHhhcCHHHHHH
Confidence            34445567788999999999999999999999854                       3456788876544  5566788


Q ss_pred             HHHHHHHhhhCC-CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHH
Q 024842           92 VREEIRVSSLFS-HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICA  170 (262)
Q Consensus        92 ~~~E~~~l~~l~-h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~  170 (262)
                      +.+|+.+|.+|+ |.+|++++++-+          ..+.+|++|| |-..+|.+++...   ..-.+.-.++.++.|++.
T Consensus       406 y~nEI~lL~KLkg~~~IIqL~DYEv----------~d~~lYmvmE-~Gd~DL~kiL~k~---~~~~~~~~lk~ywkqML~  471 (677)
T KOG0596|consen  406 YRNEIALLNKLKGHDKIIQLYDYEV----------TDGYLYMVME-CGDIDLNKILKKK---KSIDPDWFLKFYWKQMLL  471 (677)
T ss_pred             HHHHHHHHHHhcCCceEEEEeeeec----------cCceEEEEee-cccccHHHHHHhc---cCCCchHHHHHHHHHHHH
Confidence            999999999995 999999998864          2678999999 6778898888632   222333488889999999


Q ss_pred             HHHHHHcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-------ccCcccCCcccchhhhhhh-----
Q 024842          171 GLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-------ALGQRRYSCRNGLLSIVLH-----  238 (262)
Q Consensus       171 ~l~~lH~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-------~~~~~~~~~~~d~~s~g~~-----  238 (262)
                      |+.++|+.|  |||.||||.|+|+-..     .+||+|||.|.-+.+..       ..|+..|++||.+-.....     
T Consensus       472 aV~~IH~~g--IVHSDLKPANFLlVkG-----~LKLIDFGIA~aI~~DTTsI~kdsQvGT~NYMsPEAl~~~~s~~~~~~  544 (677)
T KOG0596|consen  472 AVKTIHQHG--IVHSDLKPANFLLVKG-----RLKLIDFGIANAIQPDTTSIVKDSQVGTVNYMSPEALTDMSSSRENGK  544 (677)
T ss_pred             HHHHHHHhc--eeecCCCcccEEEEee-----eEEeeeechhcccCccccceeeccccCcccccCHHHHhhccccccCCC
Confidence            999999999  9999999999999654     49999999999776544       4799999999987554333     


Q ss_pred             -hhhhhhcCcccchheeheecccCC
Q 024842          239 -LSELLSCGTVRVIQILMRELMFGR  262 (262)
Q Consensus       239 -~~e~~~~~~v~~~g~~~~~l~~G~  262 (262)
                       .+.+-...||||+|+++|+|++||
T Consensus       545 ~k~Ki~r~SDvWSLGCILYqMvYgk  569 (677)
T KOG0596|consen  545 SKIKISRKSDVWSLGCILYQMVYGK  569 (677)
T ss_pred             cceeecCccchhhhhhHHHHHHhcC
Confidence             344566789999999999999997

>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

Probab=99.97  E-value=1.8e-29  Score=202.96  Aligned_cols=191  Identities=21%  Similarity=0.323  Sum_probs=151.3

Q ss_pred             ceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc--chHHHHHHHHHHHHhhhCCC
Q 024842           27 RYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ--NNEQLEMVREEIRVSSLFSH  104 (262)
Q Consensus        27 ~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~--~~~~~~~~~~E~~~l~~l~h  104 (262)
                      +|.+.+.||+|++|.||+|.+..+++                      .+++|.+...  .......+.+|+.+++.++|
T Consensus         1 ~~~~~~~l~~g~~~~v~~~~~~~~~~----------------------~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~h   58 (256)
T cd08529           1 DFEILNKIGKGSFGVVFKVVRKADKR----------------------VYAMKQIDLSKMNRREREEAIDEARVLAKLDS   58 (256)
T ss_pred             CceEeEEecCCCCeEEEEEEEcCCCc----------------------EEEEEEeehhhCCHHHHHHHHHHHHHHHhcCC
Confidence            58899999999999999999876654                      5777765432  34445678899999999999


Q ss_pred             CCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeee
Q 024842          105 RNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAH  184 (262)
Q Consensus       105 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH  184 (262)
                      ||++++++.+.          .....+++|||+.+++|.+++...  ....+++..++.++.|++.||.|||+.+  ++|
T Consensus        59 ~~i~~~~~~~~----------~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~i~~~l~~al~~lH~~~--i~h  124 (256)
T cd08529          59 SYIIRYYESFL----------DKGKLNIVMEYAENGDLHKLLKMQ--RGRPLPEDQVWRFFIQILLGLAHLHSKK--ILH  124 (256)
T ss_pred             CCeehheeeec----------cCCEEEEEEEeCCCCcHHHHHHHh--cCCCCCHHHHHHHHHHHHHHHHHHHHCC--ccc
Confidence            99999999873          356799999999999999988642  2356899999999999999999999988  999


Q ss_pred             cCCCCCcEEEecCCCCCCceEEeeccceeeccccCc-----cCcccCCcccchhhhhhhhhhhhhcCcccchheeheecc
Q 024842          185 NDVKPGNILITCRKGQPPLAILMDFGSARPAQSKFA-----LGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELM  259 (262)
Q Consensus       185 ~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~~-----~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~  259 (262)
                      +||+|+||+++.++    .++|+|||++........     .+...|.+||....-.     .....|+|++|+++++|+
T Consensus       125 ~dl~~~nili~~~~----~~~l~df~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-----~~~~~Di~slG~il~~l~  195 (256)
T cd08529         125 RDIKSLNLFLDAYD----NVKIGDLGVAKLLSDNTNFANTIVGTPYYLSPELCEDKP-----YNEKSDVWALGVVLYECC  195 (256)
T ss_pred             CCCCcceEEEeCCC----CEEEcccccceeccCccchhhccccCccccCHHHhcCCC-----CCCccchHHHHHHHHHHH
Confidence            99999999998776    699999999887654322     3455566666543322     113478888888888888


Q ss_pred             cCC
Q 024842          260 FGR  262 (262)
Q Consensus       260 ~G~  262 (262)
                      +|+
T Consensus       196 ~g~  198 (256)
T cd08529         196 TGK  198 (256)
T ss_pred             hCC
Confidence            774

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc

>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

Probab=99.97  E-value=1.2e-30  Score=211.18  Aligned_cols=194  Identities=19%  Similarity=0.257  Sum_probs=151.4

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCCC
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSH  104 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~h  104 (262)
                      .++|++.+.||+|+||.||+|++..+++                      .+++|.+..........+.+|+.+++.++|
T Consensus         8 ~~~~~~~~~lg~g~~~~v~~~~~~~~~~----------------------~~~ik~~~~~~~~~~~~~~~e~~~~~~l~h   65 (267)
T cd06645           8 QEDFELIQRIGSGTYGDVYKARNVNTGE----------------------LAAIKVIKLEPGEDFAVVQQEIIMMKDCKH   65 (267)
T ss_pred             HHHHHHHHHhCCCCCeEEEEEEEcCCCc----------------------EEEEEEEecCchhHHHHHHHHHHHHHhCCC
Confidence            4589999999999999999999876654                      677777665554555667889999999999


Q ss_pred             CCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeee
Q 024842          105 RNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAH  184 (262)
Q Consensus       105 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH  184 (262)
                      |||+++++.+.          .....+++|||+.+++|.+++.    ....+++.+++.++.|++.||.|||+.+  ++|
T Consensus        66 ~~ii~~~~~~~----------~~~~~~lv~e~~~~~~L~~~~~----~~~~~~~~~~~~~~~~i~~~l~~lH~~~--i~H  129 (267)
T cd06645          66 SNIVAYFGSYL----------RRDKLWICMEFCGGGSLQDIYH----VTGPLSESQIAYVSRETLQGLYYLHSKG--KMH  129 (267)
T ss_pred             CCeeeEEEEEE----------eCCEEEEEEeccCCCcHHHHHH----hcCCCCHHHHHHHHHHHHHHHHHHHHCC--eec
Confidence            99999998873          3577899999999999999876    4456999999999999999999999998  999


Q ss_pred             cCCCCCcEEEecCCCCCCceEEeeccceeecccc-----CccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecc
Q 024842          185 NDVKPGNILITCRKGQPPLAILMDFGSARPAQSK-----FALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELM  259 (262)
Q Consensus       185 ~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~-----~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~  259 (262)
                      +||||+||+++.++    .++|+|||++......     ...++..|.+||.+.....  .......|+||+|+++|+|+
T Consensus       130 ~dlkp~nili~~~~----~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~--~~~~~~~DvwSlG~il~~l~  203 (267)
T cd06645         130 RDIKGANILLTDNG----HVKLADFGVSAQITATIAKRKSFIGTPYWMAPEVAAVERK--GGYNQLCDIWAVGITAIELA  203 (267)
T ss_pred             CCCCHHHEEECCCC----CEEECcceeeeEccCcccccccccCcccccChhhhccccC--CCCCchhhhHHHHHHHHHHh
Confidence            99999999998766    6999999998765422     1245566776665421100  00112467777777777777


Q ss_pred             cCC
Q 024842          260 FGR  262 (262)
Q Consensus       260 ~G~  262 (262)
                      +|+
T Consensus       204 ~~~  206 (267)
T cd06645         204 ELQ  206 (267)
T ss_pred             cCC
Confidence            763

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

Probab=99.97  E-value=4.5e-30  Score=211.56  Aligned_cols=192  Identities=23%  Similarity=0.275  Sum_probs=145.9

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc-hHHHHHHHHHHHHhhhCC
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN-NEQLEMVREEIRVSSLFS  103 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~-~~~~~~~~~E~~~l~~l~  103 (262)
                      -++|.+.+.||.|+||.||+|++..+++                      .+++|.+.... ......+.+|+.+++.++
T Consensus         5 ~~~y~~~~~lg~g~~g~vy~~~~~~~~~----------------------~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~   62 (301)
T cd07873           5 LETYIKLDKLGEGTYATVYKGRSKLTDN----------------------LVALKEIRLEHEEGAPCTAIREVSLLKDLK   62 (301)
T ss_pred             ccceEEeeEeccCcCEEEEEEEEcCCCc----------------------EEEEEEEecccccCchhHHHHHHHHHHhcC
Confidence            4579999999999999999999876655                      56777654332 222345678999999999


Q ss_pred             CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCee
Q 024842          104 HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYA  183 (262)
Q Consensus       104 h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~iv  183 (262)
                      ||||+++++.+          ......+++|||+. ++|.+++..   ....+++..++.++.|++.||.|||+.+  ++
T Consensus        63 h~nI~~~~~~~----------~~~~~~~lv~e~~~-~~l~~~l~~---~~~~~~~~~~~~~~~qi~~aL~~lH~~~--i~  126 (301)
T cd07873          63 HANIVTLHDII----------HTEKSLTLVFEYLD-KDLKQYLDD---CGNSINMHNVKLFLFQLLRGLNYCHRRK--VL  126 (301)
T ss_pred             CCCcceEEEEE----------ecCCeEEEEEeccc-cCHHHHHHh---cCCCCCHHHHHHHHHHHHHHHHHHHhCC--ee
Confidence            99999999987          33567899999986 578776642   3345899999999999999999999998  99


Q ss_pred             ecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-----ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheec
Q 024842          184 HNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMREL  258 (262)
Q Consensus       184 H~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l  258 (262)
                      |+||||+||+++.++    .++|+|||++.....+.     ..++..|.+||.+..-.    ......|+|++|+++++|
T Consensus       127 H~dlkp~Nil~~~~~----~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~----~~~~~~Dv~slG~~l~el  198 (301)
T cd07873         127 HRDLKPQNLLINERG----ELKLADFGLARAKSIPTKTYSNEVVTLWYRPPDILLGST----DYSTQIDMWGVGCIFYEM  198 (301)
T ss_pred             CCCCCHHHEEECCCC----cEEECcCcchhccCCCCCcccccceeecccCcHHHhCCC----CCccHHHHHHHHHHHHHH
Confidence            999999999998776    69999999987543221     23455666666442211    111236788888888888


Q ss_pred             ccCC
Q 024842          259 MFGR  262 (262)
Q Consensus       259 ~~G~  262 (262)
                      ++|+
T Consensus       199 ~tg~  202 (301)
T cd07873         199 STGR  202 (301)
T ss_pred             HhCC
Confidence            8774

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl

>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

Probab=99.97  E-value=5.5e-30  Score=208.84  Aligned_cols=186  Identities=20%  Similarity=0.227  Sum_probs=143.3

Q ss_pred             CceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc-chHHHHHHHHHHHHhhhCCC
Q 024842           26 NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ-NNEQLEMVREEIRVSSLFSH  104 (262)
Q Consensus        26 ~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~-~~~~~~~~~~E~~~l~~l~h  104 (262)
                      ++|++.+.||+|+||.||+|.+..+++                      .+++|..... .....+.+.+|+.+++.++|
T Consensus         1 ~~~~~~~~lg~g~~~~v~~~~~~~~~~----------------------~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h   58 (279)
T cd06619           1 QDIQYQEILGHGNGGTVYKAYHLLTRR----------------------ILAVKVIPLDITVELQKQIMSELEILYKCDS   58 (279)
T ss_pred             CcchheeeeccCCCeEEEEEEEcCCCc----------------------EEEEEEEecCCChHHHHHHHHHHHHHHhCCC
Confidence            468899999999999999999876654                      5777766543 23344678899999999999


Q ss_pred             CCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeee
Q 024842          105 RNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAH  184 (262)
Q Consensus       105 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH  184 (262)
                      ||++++++.+.          .....+++|||+.+++|..+.        .+++..+..++.|++.||.|||+.+  ++|
T Consensus        59 ~~iv~~~~~~~----------~~~~~~lv~e~~~~~~l~~~~--------~~~~~~~~~~~~qi~~~l~~lH~~~--i~H  118 (279)
T cd06619          59 PYIIGFYGAFF----------VENRISICTEFMDGGSLDVYR--------KIPEHVLGRIAVAVVKGLTYLWSLK--ILH  118 (279)
T ss_pred             CCeeeEEEEEE----------ECCEEEEEEecCCCCChHHhh--------cCCHHHHHHHHHHHHHHHHHHHHCC--Eee
Confidence            99999999873          356788999999999886432        2788999999999999999999988  999


Q ss_pred             cCCCCCcEEEecCCCCCCceEEeeccceeeccccC---ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecccC
Q 024842          185 NDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF---ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMFG  261 (262)
Q Consensus       185 ~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~---~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~G  261 (262)
                      +||||+||+++.++    .++|+|||++.......   ..++..|.+||.+-.-.     .....|+|++|+++|+|++|
T Consensus       119 ~dlkp~Nill~~~~----~~~l~dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-----~~~~~DvwslG~~l~~l~~g  189 (279)
T cd06619         119 RDVKPSNMLVNTRG----QVKLCDFGVSTQLVNSIAKTYVGTNAYMAPERISGEQ-----YGIHSDVWSLGISFMELALG  189 (279)
T ss_pred             CCCCHHHEEECCCC----CEEEeeCCcceecccccccCCCCChhhcCceeecCCC-----CCCcchHHHHHHHHHHHHhC
Confidence            99999999998776    69999999997654322   24556677776442211     11235666666666666665


Q ss_pred             C
Q 024842          262 R  262 (262)
Q Consensus       262 ~  262 (262)
                      +
T Consensus       190 ~  190 (279)
T cd06619         190 R  190 (279)
T ss_pred             C
Confidence            3

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p

>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

Probab=99.97  E-value=5.4e-30  Score=209.15  Aligned_cols=197  Identities=21%  Similarity=0.252  Sum_probs=150.8

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCCC
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSH  104 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~h  104 (262)
                      .+.|++.+.||+|+||.||++.+..++.                      .+++|.+........+.+.+|+.+++.++|
T Consensus         4 ~~~~~i~~~lg~g~~g~v~~~~~~~~~~----------------------~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h   61 (282)
T cd06643           4 EEFWEIIGELGDGAFGKVYKAQNKETGV----------------------LAAAKVIDTKSEEELEDYMVEIDILASCDH   61 (282)
T ss_pred             HHHHHHHhhcccCCCeEEEEEEECCCCe----------------------EEEEEEeCCCCHHHHHHHHHHHHHHHHCCC
Confidence            3457889999999999999999876544                      567777665555566778899999999999


Q ss_pred             CCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeee
Q 024842          105 RNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAH  184 (262)
Q Consensus       105 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH  184 (262)
                      ||++++++.+.          .....++++||+.+++|..++..   ...++++..++.++.|++.||.|||+.+  ++|
T Consensus        62 ~~ii~~~~~~~----------~~~~~~~v~e~~~~~~l~~~~~~---~~~~l~~~~~~~~~~qi~~~L~~LH~~~--i~H  126 (282)
T cd06643          62 PNIVKLLDAFY----------YENNLWILIEFCAGGAVDAVMLE---LERPLTEPQIRVVCKQTLEALNYLHENK--IIH  126 (282)
T ss_pred             CCeeeEEEEEe----------eCCEEEEEEEecCCCcHHHHHHh---cCCCCCHHHHHHHHHHHHHHHHHHHHCC--eee
Confidence            99999998873          35678999999999999877642   2456899999999999999999999998  999


Q ss_pred             cCCCCCcEEEecCCCCCCceEEeeccceeecccc-----CccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecc
Q 024842          185 NDVKPGNILITCRKGQPPLAILMDFGSARPAQSK-----FALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELM  259 (262)
Q Consensus       185 ~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~-----~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~  259 (262)
                      +||||+||+++.++    .++|+|||++......     ...++..|.+||.+-.............|+|++|+++|+|+
T Consensus       127 ~dlkp~nili~~~~----~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGvil~el~  202 (282)
T cd06643         127 RDLKAGNILFTLDG----DIKLADFGVSAKNTRTIQRRDSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMA  202 (282)
T ss_pred             cCCCcccEEEccCC----CEEEccccccccccccccccccccccccccCHhhccccCCCCCCCCccchhhhHHHHHHHHc
Confidence            99999999998766    6999999998764322     12355566666654211101111122467888888888877


Q ss_pred             cCC
Q 024842          260 FGR  262 (262)
Q Consensus       260 ~G~  262 (262)
                      +|+
T Consensus       203 ~g~  205 (282)
T cd06643         203 QIE  205 (282)
T ss_pred             cCC
Confidence            764

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.

>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

Probab=99.97  E-value=1.4e-29  Score=207.01  Aligned_cols=191  Identities=23%  Similarity=0.270  Sum_probs=145.5

Q ss_pred             ceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc---chHHHHHHHHHHHHhhhCC
Q 024842           27 RYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ---NNEQLEMVREEIRVSSLFS  103 (262)
Q Consensus        27 ~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~---~~~~~~~~~~E~~~l~~l~  103 (262)
                      .|+..+.||+|+||.||++.+..+++                      .+++|.+...   .......+.+|+.+++.++
T Consensus         1 ~f~~~~~ig~G~~g~v~~~~~~~~~~----------------------~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~   58 (285)
T cd05630           1 TFRQYRVLGKGGFGEVCACQVRATGK----------------------MYACKKLEKKRIKKRKGESMALNEKQILEKVN   58 (285)
T ss_pred             CceeeEEeecCCCeEEEEEEEcCCCc----------------------eEEEEEEehhhccchHHHHHHHHHHHHHHhCC
Confidence            47889999999999999999987765                      5677765432   1222345678999999999


Q ss_pred             CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCee
Q 024842          104 HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYA  183 (262)
Q Consensus       104 h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~iv  183 (262)
                      |+++++++..+          ...+..+++|||+.+++|.+++...  ....+++..+..++.|++.||.|||+.+  ++
T Consensus        59 ~~~i~~~~~~~----------~~~~~~~lv~e~~~g~~L~~~l~~~--~~~~l~~~~~~~~~~qi~~~l~~lH~~~--ii  124 (285)
T cd05630          59 SRFVVSLAYAY----------ETKDALCLVLTLMNGGDLKFHIYHM--GEAGFEEGRAVFYAAEICCGLEDLHQER--IV  124 (285)
T ss_pred             CCCeeeeeEEE----------ecCCEEEEEEEecCCCcHHHHHHHh--cccCCCHHHHHHHHHHHHHHHHHHHhCC--EE
Confidence            99999998877          3356799999999999999877532  2235899999999999999999999988  99


Q ss_pred             ecCCCCCcEEEecCCCCCCceEEeeccceeeccccC----ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecc
Q 024842          184 HNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELM  259 (262)
Q Consensus       184 H~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~  259 (262)
                      |+||||+||+++.++    .++|+|||++.......    ..++..|.+||.+-...     .....|+|++|+++|+|+
T Consensus       125 H~dikp~Nil~~~~~----~~~l~Dfg~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~-----~~~~~DiwslG~~l~~l~  195 (285)
T cd05630         125 YRDLKPENILLDDHG----HIRISDLGLAVHVPEGQTIKGRVGTVGYMAPEVVKNER-----YTFSPDWWALGCLLYEMI  195 (285)
T ss_pred             eCCCCHHHEEECCCC----CEEEeeccceeecCCCccccCCCCCccccChHHHcCCC-----CCCccccHHHHHHHHHHH
Confidence            999999999998766    69999999987654322    23455666666442111     112357777777777777


Q ss_pred             cCC
Q 024842          260 FGR  262 (262)
Q Consensus       260 ~G~  262 (262)
                      +|+
T Consensus       196 ~g~  198 (285)
T cd05630         196 AGQ  198 (285)
T ss_pred             hCC
Confidence            764

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as

>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.97  E-value=4.6e-31  Score=221.64  Aligned_cols=191  Identities=25%  Similarity=0.338  Sum_probs=158.5

Q ss_pred             ceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc---hHHHHHHHHHHHHhhhCC
Q 024842           27 RYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN---NEQLEMVREEIRVSSLFS  103 (262)
Q Consensus        27 ~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~---~~~~~~~~~E~~~l~~l~  103 (262)
                      .|.-++.||.|+||.||.|++..+.+                      .||||++....   .+.++++.+|+..|+.+.
T Consensus        27 lf~dLrEIGHGSFGAVYfArd~~n~e----------------------vVAIKKMsySGKQs~EKWqDIlKEVrFL~~l~   84 (948)
T KOG0577|consen   27 LFSDLREIGHGSFGAVYFARDVRNSE----------------------VVAIKKMSYSGKQSNEKWQDILKEVRFLRQLR   84 (948)
T ss_pred             HHHHHHHhcCCccceeEEeeccCccc----------------------eeeeeeccccccccHHHHHHHHHHHHHHHhcc
Confidence            46667889999999999999988766                      68888877653   445788999999999999


Q ss_pred             CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCee
Q 024842          104 HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYA  183 (262)
Q Consensus       104 h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~iv  183 (262)
                      |||++.+-++|+-          ....|+|||||.| +-.|++..   ..+++.+.++..|+.+.+.||.|||+.+  .|
T Consensus        85 HPntieYkgCyLr----------e~TaWLVMEYClG-SAsDlleV---hkKplqEvEIAAi~~gaL~gLaYLHS~~--~I  148 (948)
T KOG0577|consen   85 HPNTIEYKGCYLR----------EHTAWLVMEYCLG-SASDLLEV---HKKPLQEVEIAAITHGALQGLAYLHSHN--RI  148 (948)
T ss_pred             CCCcccccceeec----------cchHHHHHHHHhc-cHHHHHHH---HhccchHHHHHHHHHHHHHHHHHHHHhh--HH
Confidence            9999999999953          5678999999875 56666654   4456999999999999999999999988  99


Q ss_pred             ecCCCCCcEEEecCCCCCCceEEeeccceeeccc-cCccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecccC
Q 024842          184 HNDVKPGNILITCRKGQPPLAILMDFGSARPAQS-KFALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMFG  261 (262)
Q Consensus       184 H~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~-~~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~G  261 (262)
                      |||||+.|||++..+    .+||+|||.|....+ +...|+|-|++|+-+.++----++  ..-||||+|++.+||...
T Consensus       149 HRDiKAGNILLse~g----~VKLaDFGSAsi~~PAnsFvGTPywMAPEVILAMDEGqYd--gkvDvWSLGITCIELAER  221 (948)
T KOG0577|consen  149 HRDIKAGNILLSEPG----LVKLADFGSASIMAPANSFVGTPYWMAPEVILAMDEGQYD--GKVDVWSLGITCIELAER  221 (948)
T ss_pred             hhhccccceEecCCC----eeeeccccchhhcCchhcccCCccccchhHheeccccccC--Cccceeeccchhhhhhhc
Confidence            999999999998777    899999999988655 445799999999988776433333  456899999988887654

>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.96  E-value=1.1e-29  Score=207.58  Aligned_cols=198  Identities=19%  Similarity=0.272  Sum_probs=149.8

Q ss_pred             cCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc-chHHHHHHHHHHHHhhhC
Q 024842           24 NENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ-NNEQLEMVREEIRVSSLF  102 (262)
Q Consensus        24 ~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~-~~~~~~~~~~E~~~l~~l  102 (262)
                      +...|++.+.||+|+||.||++.....+.                  ..+..+++|.+... .......+.+|+.+++.+
T Consensus         2 ~~~~~~~~~~lg~g~~g~v~~~~~~~~~~------------------~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~l   63 (284)
T cd05079           2 EKRFLKRIRDLGEGHFGKVELCRYDPEGD------------------NTGEQVAVKSLKPESGGNHIADLKKEIEILRNL   63 (284)
T ss_pred             chhhhhhceecCCCCceeEEEEEEccCCC------------------CccceEEEEEcCccccHHHHHHHHHHHHHHHhC
Confidence            45678999999999999999998643221                  13457888877644 234456789999999999


Q ss_pred             CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCe
Q 024842          103 SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPY  182 (262)
Q Consensus       103 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~i  182 (262)
                      +|||++++.+.+..        ......+++|||+++++|.+++..   ....+++..++.++.|++.||+|||+++  +
T Consensus        64 ~h~~i~~~~~~~~~--------~~~~~~~lv~e~~~g~~L~~~l~~---~~~~~~~~~~~~i~~~i~~aL~~lH~~g--i  130 (284)
T cd05079          64 YHENIVKYKGICTE--------DGGNGIKLIMEFLPSGSLKEYLPR---NKNKINLKQQLKYAVQICKGMDYLGSRQ--Y  130 (284)
T ss_pred             CCCCeeeeeeEEec--------CCCCceEEEEEccCCCCHHHHHHh---ccCCCCHHHHHHHHHHHHHHHHHHHHCC--e
Confidence            99999999887631        223568899999999999998752   2335899999999999999999999998  9


Q ss_pred             eecCCCCCcEEEecCCCCCCceEEeeccceeeccccC--------ccCcccCCcccchhhhhhhhhhhhhcCcccchhee
Q 024842          183 AHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF--------ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQIL  254 (262)
Q Consensus       183 vH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~--------~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~  254 (262)
                      +||||||+||+++.++    .++|+|||++.......        ..+...|.+||....     .......|+||+|++
T Consensus       131 ~H~dlkp~Nil~~~~~----~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~-----~~~~~~~Di~slG~i  201 (284)
T cd05079         131 VHRDLAARNVLVESEH----QVKIGDFGLTKAIETDKEYYTVKDDLDSPVFWYAPECLIQ-----SKFYIASDVWSFGVT  201 (284)
T ss_pred             eecccchheEEEcCCC----CEEECCCccccccccCccceeecCCCCCCccccCHHHhcc-----CCCCccccchhhhhh
Confidence            9999999999998766    69999999988654321        122334555554321     112234788888888


Q ss_pred             heecccC
Q 024842          255 MRELMFG  261 (262)
Q Consensus       255 ~~~l~~G  261 (262)
                      +++|++|
T Consensus       202 l~ellt~  208 (284)
T cd05079         202 LYELLTY  208 (284)
T ss_pred             hhhhhcC
Confidence            8888775

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a

>cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

Probab=99.96  E-value=6.3e-30  Score=212.11  Aligned_cols=195  Identities=23%  Similarity=0.268  Sum_probs=143.0

Q ss_pred             EEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCCCCCccch
Q 024842           31 LRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSHRNLLPL  110 (262)
Q Consensus        31 ~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~  110 (262)
                      ..+||+|+||.||+|++.....                    ...+++|.+.....  ...+.+|+.+++.++||||+++
T Consensus         6 g~~lG~G~~g~Vy~~~~~~~~~--------------------~~~~a~k~~~~~~~--~~~~~~E~~~l~~l~h~niv~~   63 (317)
T cd07867           6 GCKVGRGTYGHVYKAKRKDGKD--------------------EKEYALKQIEGTGI--SMSACREIALLRELKHPNVIAL   63 (317)
T ss_pred             ceEeccCCCeeEEEEEecCCCc--------------------cceEEEEEecCCCC--cHHHHHHHHHHHhCCCCCeeeE
Confidence            4679999999999999754321                    23677876654322  2356789999999999999999


Q ss_pred             hhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhh-----hcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeeec
Q 024842          111 LDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQ-----TKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHN  185 (262)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~-----~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~  185 (262)
                      ++++..        ......+++|+|+. ++|.+++....     .....+++..++.++.|++.||.|||+.+  ++||
T Consensus        64 ~~~~~~--------~~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH~~~--ivH~  132 (317)
T cd07867          64 QKVFLS--------HSDRKVWLLFDYAE-HDLWHIIKFHRASKANKKPMQLPRSMVKSLLYQILDGIHYLHANW--VLHR  132 (317)
T ss_pred             EEEEec--------cCCCeEEEEEeeeC-CcHHHHHHhhhccccCCCCccCCHHHHHHHHHHHHHHHHHHHhCC--EEcC
Confidence            988742        33556889999866 47777664321     12235889999999999999999999998  9999


Q ss_pred             CCCCCcEEEecCCCCCCceEEeeccceeeccccC--------ccCcccCCcccchhhhhhhhhhhhhcCcccchheehee
Q 024842          186 DVKPGNILITCRKGQPPLAILMDFGSARPAQSKF--------ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRE  257 (262)
Q Consensus       186 dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~--------~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~  257 (262)
                      ||||+||++..+++....+||+|||++.......        ..++..|.+||.+.+..    ......|+||+|+++||
T Consensus       133 Dlkp~Nil~~~~~~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~----~~~~~~DiwSlG~il~e  208 (317)
T cd07867         133 DLKPANILVMGEGPERGRVKIADMGFARLFNSPLKPLADLDPVVVTFWYRAPELLLGAR----HYTKAIDIWAIGCIFAE  208 (317)
T ss_pred             CCCHHHEEEccCCCCCCcEEEeeccceeccCCCcccccccCcceecccccCcHHhcCCC----ccCcHHHHHhHHHHHHH
Confidence            9999999996554344479999999998664322        23456677777653321    11223688888888888


Q ss_pred             cccCC
Q 024842          258 LMFGR  262 (262)
Q Consensus       258 l~~G~  262 (262)
                      |++|+
T Consensus       209 l~tg~  213 (317)
T cd07867         209 LLTSE  213 (317)
T ss_pred             HHhCC
Confidence            88885

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as

>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

Probab=99.96  E-value=9.6e-30  Score=208.64  Aligned_cols=201  Identities=19%  Similarity=0.252  Sum_probs=153.2

Q ss_pred             cCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCC
Q 024842           24 NENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFS  103 (262)
Q Consensus        24 ~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~  103 (262)
                      ...+|.+.+.||+|+||.||+|.+......                 .+...+++|..........+.+.+|+.+++.++
T Consensus         3 ~~~~~~~~~~lg~g~~g~vy~~~~~~~~~~-----------------~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~   65 (291)
T cd05094           3 KRRDIVLKRELGEGAFGKVFLAECYNLSPT-----------------KDKMLVAVKALKDPTLAARKDFQREAELLTNLQ   65 (291)
T ss_pred             chHHeEEeeeecccCCCeEEEeEeeccCCC-----------------CcceeeEEEecCCccHHHHHHHHHHHHHHhcCC
Confidence            356799999999999999999986543221                 123467888877666666678899999999999


Q ss_pred             CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhh------------cCCCCCHHHHHHHHHHHHHH
Q 024842          104 HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQT------------KKEFFSTSDVLQIFYQICAG  171 (262)
Q Consensus       104 h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~------------~~~~~~~~~~~~i~~ql~~~  171 (262)
                      |+||+++++.+          ......+++|||+.+++|.+++.....            ....+++..++.++.|++.|
T Consensus        66 h~~i~~~~~~~----------~~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~a  135 (291)
T cd05094          66 HEHIVKFYGVC----------GDGDPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIASQIASG  135 (291)
T ss_pred             CCCcceEEEEE----------ccCCceEEEEecCCCCcHHHHHHhcCcccccccccccccCcCCCCHHHHHHHHHHHHHH
Confidence            99999999987          335678999999999999998864211            12347899999999999999


Q ss_pred             HHHHHcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-------ccCcccCCcccchhhhhhhhhhhhh
Q 024842          172 LKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-------ALGQRRYSCRNGLLSIVLHLSELLS  244 (262)
Q Consensus       172 l~~lH~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-------~~~~~~~~~~~d~~s~g~~~~e~~~  244 (262)
                      |.|||+++  ++||||||+||+++.++    .++|+|||++.......       ..++..|.+||.+....     ...
T Consensus       136 l~~lH~~~--i~H~dlkp~Nil~~~~~----~~~l~dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-----~~~  204 (291)
T cd05094         136 MVYLASQH--FVHRDLATRNCLVGANL----LVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRK-----FTT  204 (291)
T ss_pred             HHHHHhCC--eeecccCcceEEEccCC----cEEECCCCcccccCCCceeecCCCCCcceeecChHHhccCC-----CCc
Confidence            99999998  99999999999998776    79999999987543321       12344567776543321     112


Q ss_pred             cCcccchheeheeccc-CC
Q 024842          245 CGTVRVIQILMRELMF-GR  262 (262)
Q Consensus       245 ~~~v~~~g~~~~~l~~-G~  262 (262)
                      .+|+||+|+++|+|++ |+
T Consensus       205 ~~Di~slG~il~el~t~g~  223 (291)
T cd05094         205 ESDVWSFGVILWEIFTYGK  223 (291)
T ss_pred             hhhHHHHHHHHHHHHhCCC
Confidence            3677777777777776 53

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n

>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

Probab=99.96  E-value=1.7e-29  Score=207.07  Aligned_cols=204  Identities=20%  Similarity=0.232  Sum_probs=154.2

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhC-C
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLF-S  103 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l-~  103 (262)
                      .++|++.+.||+|+||.||++.+..+++                      .+++|....... ....+.+|+.+++.+ +
T Consensus        21 ~~~y~~~~~l~~g~~~~vy~~~~~~~~~----------------------~~aik~~~~~~~-~~~~~~~e~~~l~~l~~   77 (291)
T cd06639          21 TDTWEIIETIGKGTYGKVYKVTNKKDGS----------------------LAAVKILDPISD-VDEEIEAEYNILQSLPN   77 (291)
T ss_pred             CCCeEEEEEeecCCCeEEEEEEECCCCC----------------------EEEEEEeccccc-HHHHHHHHHHHHHHhcC
Confidence            6789999999999999999999876554                      567776543322 235667888888888 7


Q ss_pred             CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCee
Q 024842          104 HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYA  183 (262)
Q Consensus       104 h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~iv  183 (262)
                      |||++++++.+...     ........+++|||+.+++|.+++.........+++..++.++.|++.||.|||+.+  ++
T Consensus        78 h~ni~~~~~~~~~~-----~~~~~~~~~lv~ey~~~~sL~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~--iv  150 (291)
T cd06639          78 HPNVVKFYGMFYKA-----DKLVGGQLWLVLELCNGGSVTELVKGLLICGQRLDEAMISYILYGALLGLQHLHNNR--II  150 (291)
T ss_pred             CCCeEEEEEEEEec-----cccCCCeeEEEEEECCCCcHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHhCC--ee
Confidence            99999999887420     011235689999999999999988755445567899999999999999999999988  99


Q ss_pred             ecCCCCCcEEEecCCCCCCceEEeeccceeecccc-----CccCcccCCcccchhhhhhhhhhhhhcCcccchheeheec
Q 024842          184 HNDVKPGNILITCRKGQPPLAILMDFGSARPAQSK-----FALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMREL  258 (262)
Q Consensus       184 H~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~-----~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l  258 (262)
                      |+||||+||+++.++    .++|+|||++......     ...++..|.+||.+..............|+|++|+++|+|
T Consensus       151 H~dlkp~nili~~~~----~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slGvi~~el  226 (291)
T cd06639         151 HRDVKGNNILLTTEG----GVKLVDFGVSAQLTSTRLRRNTSVGTPFWMAPEVIACEQQYDYSYDARCDVWSLGITAIEL  226 (291)
T ss_pred             ccCCCHHHEEEcCCC----CEEEeecccchhcccccccccCccCCccccChhhhcCCCCcccccCCccchHHHHHHHHHH
Confidence            999999999998766    6999999998765432     2245566777775432111111123457888888888888


Q ss_pred             ccCC
Q 024842          259 MFGR  262 (262)
Q Consensus       259 ~~G~  262 (262)
                      ++|+
T Consensus       227 ~~g~  230 (291)
T cd06639         227 GDGD  230 (291)
T ss_pred             hhCC
Confidence            8875

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre

>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

Probab=99.96  E-value=7.2e-30  Score=211.95  Aligned_cols=184  Identities=22%  Similarity=0.266  Sum_probs=142.5

Q ss_pred             EEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc---chHHHHHHHHHHHHhhhC-CCCCc
Q 024842           32 RQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ---NNEQLEMVREEIRVSSLF-SHRNL  107 (262)
Q Consensus        32 ~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~---~~~~~~~~~~E~~~l~~l-~h~~i  107 (262)
                      +.||+|+||.||+|.+..+++                      .+|+|.+...   .......+..|..+++.+ +||||
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~----------------------~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~h~~i   58 (318)
T cd05570           1 KVLGKGSFGKVLLAELKGTDE----------------------LYAVKVLKKDVILQDDDVECTMTEKRVLALAGKHPFL   58 (318)
T ss_pred             CeeeeCCCeEEEEEEECCCCC----------------------EEEEEEEEHHHHhhhhHHHHHHHHHHHHHhccCCCCc
Confidence            469999999999999876654                      5777766533   223345567788888877 69999


Q ss_pred             cchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeeecCC
Q 024842          108 LPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDV  187 (262)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~di  187 (262)
                      +++++.+          ......+++|||+.+++|...+.    ....+++..+..++.|++.||.|||+.+  ++||||
T Consensus        59 ~~~~~~~----------~~~~~~~lv~e~~~~~~L~~~~~----~~~~l~~~~~~~~~~qi~~~l~~LH~~~--ivH~dl  122 (318)
T cd05570          59 TQLHSCF----------QTKDRLFFVMEYVNGGDLMFHIQ----RSGRFDEPRARFYAAEIVLGLQFLHERG--IIYRDL  122 (318)
T ss_pred             cceeeEE----------EcCCEEEEEEcCCCCCCHHHHHH----HcCCCCHHHHHHHHHHHHHHHHHHHhCC--eEccCC
Confidence            9999987          33667999999999999988775    3446999999999999999999999998  999999


Q ss_pred             CCCcEEEecCCCCCCceEEeeccceeecccc-----CccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecccCC
Q 024842          188 KPGNILITCRKGQPPLAILMDFGSARPAQSK-----FALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMFGR  262 (262)
Q Consensus       188 kp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~-----~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~G~  262 (262)
                      ||+||+++.++    .++|+|||++......     ...++..|.+||.+-...     .....|+|++|+++|+|++|+
T Consensus       123 kp~Nill~~~~----~~kl~Dfg~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~-----~~~~~DiwslGvil~~l~~G~  193 (318)
T cd05570         123 KLDNVLLDSEG----HIKIADFGMCKEGILGGVTTSTFCGTPDYIAPEILSYQP-----YGPAVDWWALGVLLYEMLAGQ  193 (318)
T ss_pred             CHHHeEECCCC----cEEecccCCCeecCcCCCcccceecCccccCHHHhcCCC-----CCcchhhhhHHHHHHHHhhCC
Confidence            99999998776    6999999998753211     123566777777543221     122468888888888888875

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re

>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

Probab=99.96  E-value=1.9e-29  Score=204.08  Aligned_cols=192  Identities=19%  Similarity=0.248  Sum_probs=147.6

Q ss_pred             CceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc-----chHHHHHHHHHHHHhh
Q 024842           26 NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ-----NNEQLEMVREEIRVSS  100 (262)
Q Consensus        26 ~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~-----~~~~~~~~~~E~~~l~  100 (262)
                      .+|++.+.||+|+||.||++.+..+++                      .+++|.+...     .....+.+.+|+.+++
T Consensus         2 ~~~~~~~~l~~g~~g~v~~~~~~~~~~----------------------~v~ik~~~~~~~~~~~~~~~~~~~~E~~~l~   59 (265)
T cd06652           2 TNWRLGKLLGQGAFGRVYLCYDADTGR----------------------ELAVKQVQFDPESPETSKEVNALECEIQLLK   59 (265)
T ss_pred             CcceEeeEEecCCceEEEEEEEcCCCc----------------------EEEEEEeecCcCCcccHHHHHHHHHHHHHHH
Confidence            579999999999999999999876654                      5677755322     2234567888999999


Q ss_pred             hCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCC
Q 024842          101 LFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEP  180 (262)
Q Consensus       101 ~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~  180 (262)
                      .+.||||+++++.+.        .......+++||++.+++|.+++.    ....+++..++.++.|++.||.|||+++ 
T Consensus        60 ~l~h~~i~~~~~~~~--------~~~~~~~~~v~e~~~~~~L~~~l~----~~~~~~~~~~~~~~~~l~~~l~~lH~~~-  126 (265)
T cd06652          60 NLLHERIVQYYGCLR--------DPMERTLSIFMEHMPGGSIKDQLK----SYGALTENVTRKYTRQILEGVSYLHSNM-  126 (265)
T ss_pred             hcCCCCeeeEEeEec--------cCCCceEEEEEEecCCCcHHHHHH----HcCCCCHHHHHHHHHHHHHHHHHHHhCC-
Confidence            999999999998763        122356789999999999998876    3345889999999999999999999998 


Q ss_pred             CeeecCCCCCcEEEecCCCCCCceEEeeccceeecccc--------CccCcccCCcccchhhhhhhhhhhhhcCcccchh
Q 024842          181 PYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSK--------FALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQ  252 (262)
Q Consensus       181 ~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~--------~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g  252 (262)
                       ++|+||+|+||+++.++    .++|+|||++......        ...++..|.+||.+..-     ......|+|++|
T Consensus       127 -i~H~dl~p~nil~~~~~----~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-----~~~~~~Dv~slG  196 (265)
T cd06652         127 -IVHRDIKGANILRDSVG----NVKLGDFGASKRLQTICLSGTGMKSVTGTPYWMSPEVISGE-----GYGRKADIWSVG  196 (265)
T ss_pred             -EecCCCCHHHEEecCCC----CEEECcCccccccccccccccccccCCCCccccChhhhcCC-----CCCcchhHHHHH
Confidence             99999999999998766    6999999998754321        12345567777644221     112346788888


Q ss_pred             eeheecccCC
Q 024842          253 ILMRELMFGR  262 (262)
Q Consensus       253 ~~~~~l~~G~  262 (262)
                      +++|+|++|+
T Consensus       197 ~il~el~~g~  206 (265)
T cd06652         197 CTVVEMLTEK  206 (265)
T ss_pred             HHHHHHhhCC
Confidence            8888887774

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re

>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

Probab=99.96  E-value=1.6e-29  Score=206.60  Aligned_cols=191  Identities=27%  Similarity=0.363  Sum_probs=148.4

Q ss_pred             CceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc--hHHHHHHHHHHHHhhhCC
Q 024842           26 NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN--NEQLEMVREEIRVSSLFS  103 (262)
Q Consensus        26 ~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~--~~~~~~~~~E~~~l~~l~  103 (262)
                      ++|++.+.||+|++|.||+|.+..+++                      .+++|.+....  ....+.+.+|+++++.++
T Consensus         1 ~~y~~~~~lg~g~~~~vy~~~~~~~~~----------------------~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~   58 (286)
T cd07846           1 EKYENLGLVGEGSYGMVMKCKHKETGQ----------------------IVAIKKFLESEDDKMVKKIAMREIRMLKQLR   58 (286)
T ss_pred             CceeEeeeeccCCCeEEEEEEECCCCC----------------------EEEEEeHhhccCcchhhHHHHHHHHHHHhcC
Confidence            479999999999999999999876554                      57777654332  223456788999999999


Q ss_pred             CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCee
Q 024842          104 HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYA  183 (262)
Q Consensus       104 h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~iv  183 (262)
                      ||||+++++.+          ......++++||+.+++|..+..    ....+++..++.++.|++.||.|||+.+  ++
T Consensus        59 h~~i~~~~~~~----------~~~~~~~lv~e~~~~~~l~~~~~----~~~~~~~~~~~~~~~~i~~~l~~LH~~~--i~  122 (286)
T cd07846          59 HENLVNLIEVF----------RRKKRLYLVFEFVDHTVLDDLEK----YPNGLDESRVRKYLFQILRGIEFCHSHN--II  122 (286)
T ss_pred             CcchhhHHHhc----------ccCCeEEEEEecCCccHHHHHHh----ccCCCCHHHHHHHHHHHHHHHHHHHHCC--cc
Confidence            99999999987          34677999999999888877654    3445899999999999999999999988  99


Q ss_pred             ecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-----ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheec
Q 024842          184 HNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMREL  258 (262)
Q Consensus       184 H~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l  258 (262)
                      |+||+|+||+++.++    .++|+|||++.......     ..++..|.+||.+.+-..    .....|+||+|+++++|
T Consensus       123 h~~l~p~ni~~~~~~----~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~----~~~~~Dv~slG~~l~el  194 (286)
T cd07846         123 HRDIKPENILVSQSG----VVKLCDFGFARTLAAPGEVYTDYVATRWYRAPELLVGDTK----YGRAVDIWAVGCLVTEM  194 (286)
T ss_pred             ccCCCHHHEEECCCC----cEEEEeeeeeeeccCCccccCcccceeeccCcHHhccccc----cCchHhHHHHHHHHHHH
Confidence            999999999998776    69999999988654322     124455666665432110    11236888888888888


Q ss_pred             ccCC
Q 024842          259 MFGR  262 (262)
Q Consensus       259 ~~G~  262 (262)
                      ++|+
T Consensus       195 ~~g~  198 (286)
T cd07846         195 LTGE  198 (286)
T ss_pred             HcCC
Confidence            8874

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI

>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

Probab=99.96  E-value=1.2e-29  Score=205.06  Aligned_cols=192  Identities=19%  Similarity=0.222  Sum_probs=147.2

Q ss_pred             ecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhC
Q 024842           23 INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLF  102 (262)
Q Consensus        23 ~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l  102 (262)
                      +...+|.+.+.||+|++|.||+|.+...++                      .+++|..... ......+.+|+.+++.+
T Consensus         3 ~~~~~~~~~~~ig~g~~~~v~~~~~~~~~~----------------------~~~~K~~~~~-~~~~~~~~~e~~~l~~l   59 (263)
T cd05052           3 MERTDITMKHKLGGGQYGEVYEGVWKKYSL----------------------TVAVKTLKED-TMEVEEFLKEAAVMKEI   59 (263)
T ss_pred             CchHHeEEeeecCCcccceEEEEEEecCCc----------------------eEEEEEecCC-chHHHHHHHHHHHHHhC
Confidence            345679999999999999999999876544                      5777766543 23346788899999999


Q ss_pred             CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCe
Q 024842          103 SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPY  182 (262)
Q Consensus       103 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~i  182 (262)
                      +|||++++++.+.          .....+++|||+.+++|.+++...  ....+++..++.++.|++.||+|||+++  +
T Consensus        60 ~h~~i~~~~~~~~----------~~~~~~lv~e~~~~~~L~~~~~~~--~~~~l~~~~~~~~~~ql~~~l~~lH~~~--i  125 (263)
T cd05052          60 KHPNLVQLLGVCT----------REPPFYIITEFMTYGNLLDYLREC--NRQEVNAVVLLYMATQISSAMEYLEKKN--F  125 (263)
T ss_pred             CCCChhheEEEEc----------CCCCcEEEEEeCCCCcHHHHHHhC--CCCCCCHHHHHHHHHHHHHHHHHHHhCC--E
Confidence            9999999998873          356689999999999999987532  2345899999999999999999999988  9


Q ss_pred             eecCCCCCcEEEecCCCCCCceEEeeccceeeccccCc------cCcccCCcccchhhhhhhhhhhhhcCcccchheehe
Q 024842          183 AHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKFA------LGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMR  256 (262)
Q Consensus       183 vH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~~------~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~  256 (262)
                      +|+||||+||+++.++    .++|+|||++........      ..+..|.+||.+....     .....|+|++|+++|
T Consensus       126 ~H~dlkp~nil~~~~~----~~kl~df~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-----~~~~~Dv~slG~il~  196 (263)
T cd05052         126 IHRDLAARNCLVGENH----LVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNK-----FSIKSDVWAFGVLLW  196 (263)
T ss_pred             eecccCcceEEEcCCC----cEEeCCCccccccccceeeccCCCCCccccCCHHHhccCC-----CCchhHHHHHHHHHH
Confidence            9999999999998766    699999999886654321      1223466666442211     112357777777777


Q ss_pred             eccc
Q 024842          257 ELMF  260 (262)
Q Consensus       257 ~l~~  260 (262)
                      +|++
T Consensus       197 el~t  200 (263)
T cd05052         197 EIAT  200 (263)
T ss_pred             HHHc
Confidence            7765

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays

>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

Probab=99.96  E-value=7.2e-30  Score=206.64  Aligned_cols=193  Identities=25%  Similarity=0.340  Sum_probs=147.9

Q ss_pred             CceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc---chHHHHHHHHHHHHhhhC
Q 024842           26 NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ---NNEQLEMVREEIRVSSLF  102 (262)
Q Consensus        26 ~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~---~~~~~~~~~~E~~~l~~l  102 (262)
                      ++|++.+.||+|++|.||++.+..+++                      .+++|.+...   .....+.+.+|+.+++.+
T Consensus         2 ~~y~~~~~ig~g~~g~v~~~~~~~~~~----------------------~~~vK~~~~~~~~~~~~~~~~~~e~~~l~~~   59 (267)
T cd08229           2 ANFRIEKKIGRGQFSEVYRATCLLDGV----------------------PVALKKVQIFDLMDAKARADCIKEIDLLKQL   59 (267)
T ss_pred             chhhhhhhhcccCCeEEEEEeecCCCc----------------------eEEEEeeeehhhhhHHHHHHHHHHHHHHHHc
Confidence            478899999999999999999876654                      5677755432   333446788999999999


Q ss_pred             CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCe
Q 024842          103 SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPY  182 (262)
Q Consensus       103 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~i  182 (262)
                      +|+||+++++.+.          ..+..+++|+++.+++|.+++.........+++..++.++.|++.||.|||+++  +
T Consensus        60 ~h~~i~~~~~~~~----------~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~--i  127 (267)
T cd08229          60 NHPNVIKYYASFI----------EDNELNIVLELADAGDLSRMIKHFKKQKRLIPEKTVWKYFVQLCSALEHMHSRR--V  127 (267)
T ss_pred             cCCchhhhhheeE----------eCCeEEEEEEecCCCCHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHCC--e
Confidence            9999999999873          356789999999999999988754444566899999999999999999999998  9


Q ss_pred             eecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-----ccCcccCCcccchhhhhhhhhhhhhcCcccchheehee
Q 024842          183 AHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRE  257 (262)
Q Consensus       183 vH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~  257 (262)
                      +|+||+|+||+++.++    .++|+|||++.......     ..+...|.+||.+.+-+.     ....|+|++|+++++
T Consensus       128 ~H~dl~p~nili~~~~----~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~ape~~~~~~~-----~~~~Dv~slG~il~~  198 (267)
T cd08229         128 MHRDIKPANVFITATG----VVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPERIHENGY-----NFKSDIWSLGCLLYE  198 (267)
T ss_pred             ecCCCCHHHEEEcCCC----CEEECcchhhhccccCCcccccccCCcCccCHHHhcCCCc-----cchhhHHHHHHHHHH
Confidence            9999999999998766    69999999987654322     234455666654322111     113566666666666


Q ss_pred             cccC
Q 024842          258 LMFG  261 (262)
Q Consensus       258 l~~G  261 (262)
                      |++|
T Consensus       199 l~~g  202 (267)
T cd08229         199 MAAL  202 (267)
T ss_pred             HHhC
Confidence            6665

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.

>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

Probab=99.96  E-value=2.1e-29  Score=206.09  Aligned_cols=191  Identities=22%  Similarity=0.235  Sum_probs=146.7

Q ss_pred             ceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc---hHHHHHHHHHHHHhhhCC
Q 024842           27 RYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN---NEQLEMVREEIRVSSLFS  103 (262)
Q Consensus        27 ~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~---~~~~~~~~~E~~~l~~l~  103 (262)
                      .|+..+.||+|+||.||++.+..+++                      .+|+|.+....   ......+.+|+.+++.++
T Consensus         1 ~~~~~~~lg~G~~g~vy~~~~~~~~~----------------------~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~   58 (285)
T cd05632           1 TFRQYRVLGKGGFGEVCACQVRATGK----------------------MYACKRLEKKRIKKRKGESMALNEKQILEKVN   58 (285)
T ss_pred             CceEEEEEecCCCeEEEEEEECCCCc----------------------EEEEEEeehhhhhhhhHHHHHHHHHHHHHHcC
Confidence            47888999999999999999887655                      57777664332   223345678999999999


Q ss_pred             CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCee
Q 024842          104 HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYA  183 (262)
Q Consensus       104 h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~iv  183 (262)
                      |+|++++...+          ...+..+++|||+.+++|.+++...  ....+++..+..++.|++.||.|||+.+  |+
T Consensus        59 ~~~i~~~~~~~----------~~~~~~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~~~~ql~~~l~~lH~~~--ii  124 (285)
T cd05632          59 SQFVVNLAYAY----------ETKDALCLVLTIMNGGDLKFHIYNM--GNPGFEEERALFYAAEILCGLEDLHREN--TV  124 (285)
T ss_pred             CcCceeEEEEE----------ecCCEEEEEEEeccCccHHHHHHHh--cCCCCCHHHHHHHHHHHHHHHHHHHhCC--ee
Confidence            99999998877          3356799999999999998877532  2335999999999999999999999988  99


Q ss_pred             ecCCCCCcEEEecCCCCCCceEEeeccceeeccccC----ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecc
Q 024842          184 HNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELM  259 (262)
Q Consensus       184 H~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~  259 (262)
                      ||||||+||+++.++    .++|+|||++.......    ..++..|.+||.+..-     ......|+|++|+++++|+
T Consensus       125 H~dikp~Nili~~~~----~~kl~Dfg~~~~~~~~~~~~~~~g~~~~~aPE~~~~~-----~~~~~~Di~slG~~l~~l~  195 (285)
T cd05632         125 YRDLKPENILLDDYG----HIRISDLGLAVKIPEGESIRGRVGTVGYMAPEVLNNQ-----RYTLSPDYWGLGCLIYEMI  195 (285)
T ss_pred             ecCCCHHHEEECCCC----CEEEecCCcceecCCCCcccCCCCCcCccChHHhcCC-----CCCcccchHHHHHHHHHHH
Confidence            999999999998765    69999999987654322    2456667777655221     1122357777777777777


Q ss_pred             cCC
Q 024842          260 FGR  262 (262)
Q Consensus       260 ~G~  262 (262)
                      +|+
T Consensus       196 ~g~  198 (285)
T cd05632         196 EGQ  198 (285)
T ss_pred             hCC
Confidence            764

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with

>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

Probab=99.96  E-value=1.1e-29  Score=209.83  Aligned_cols=206  Identities=19%  Similarity=0.284  Sum_probs=151.8

Q ss_pred             CceeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc-chHHHHHHHHHHH
Q 024842           19 GDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ-NNEQLEMVREEIR   97 (262)
Q Consensus        19 ~~~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~-~~~~~~~~~~E~~   97 (262)
                      ....+..++|.+.+.||+|+||.||++++....+...               .....+++|.+... .......+..|+.
T Consensus        11 ~~~~~~~~~~~i~~~lg~G~~g~V~~~~~~~~~~~~~---------------~~~~~~aiK~~~~~~~~~~~~~~~~e~~   75 (307)
T cd05098          11 PRWEVPRDRLVLGKPLGEGCFGQVVMAEAIGLDKEKP---------------NRVTKVAVKMLKSDATEKDLSDLISEME   75 (307)
T ss_pred             CcceeehHHeEEeeeeccCCCeeEEEeEEeccCCccc---------------CccceEEEEeccCCCChHHHHHHHHHHH
Confidence            3556677899999999999999999998754322100               11235888877654 2344567888999


Q ss_pred             HhhhC-CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhh------------cCCCCCHHHHHHH
Q 024842           98 VSSLF-SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQT------------KKEFFSTSDVLQI  164 (262)
Q Consensus        98 ~l~~l-~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~------------~~~~~~~~~~~~i  164 (262)
                      +++.+ +||||+++++.+          ...+..|++|||+.+++|.+++.....            ....+++.+++.+
T Consensus        76 ~l~~l~~h~~i~~~~~~~----------~~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  145 (307)
T cd05098          76 MMKMIGKHKNIINLLGAC----------TQDGPLYVIVEYASKGNLREYLRARRPPGMEYCYNPTQVPEEQLSFKDLVSC  145 (307)
T ss_pred             HHHHhcCCCCEeeEEEEE----------ecCCceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHH
Confidence            99999 799999999987          335678999999999999999864321            1134888999999


Q ss_pred             HHHHHHHHHHHHcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-------ccCcccCCcccchhhhhh
Q 024842          165 FYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-------ALGQRRYSCRNGLLSIVL  237 (262)
Q Consensus       165 ~~ql~~~l~~lH~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-------~~~~~~~~~~~d~~s~g~  237 (262)
                      +.|++.||+|||+.+  ++|+||||+||+++.++    .++|+|||++.......       ......|.+||.+..-. 
T Consensus       146 ~~qi~~aL~~lH~~g--i~H~dlkp~Nill~~~~----~~kL~dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-  218 (307)
T cd05098         146 AYQVARGMEYLASKK--CIHRDLAARNVLVTEDN----VMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRI-  218 (307)
T ss_pred             HHHHHHHHHHHHHCC--cccccccHHheEEcCCC----cEEECCCcccccccccchhhccccCCCccceeChHHhccCC-
Confidence            999999999999988  99999999999998766    69999999987543211       11223566666443211 


Q ss_pred             hhhhhhhcCcccchheeheeccc
Q 024842          238 HLSELLSCGTVRVIQILMRELMF  260 (262)
Q Consensus       238 ~~~e~~~~~~v~~~g~~~~~l~~  260 (262)
                          ....+|+|++|+++|+|++
T Consensus       219 ----~~~~~DvwslG~~l~el~~  237 (307)
T cd05098         219 ----YTHQSDVWSFGVLLWEIFT  237 (307)
T ss_pred             ----CCcHHHHHHHHHHHHHHHc
Confidence                1223567777777777665

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.96  E-value=9.2e-30  Score=207.21  Aligned_cols=195  Identities=22%  Similarity=0.323  Sum_probs=154.6

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCCC
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSH  104 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~h  104 (262)
                      ..+..+.+.||+|.||+||+|+|+.                        +.||+|++...++..+ .-+.|+..-..|+|
T Consensus       210 arqI~L~e~IGkGRyGEVwrG~wrG------------------------e~VAVKiF~srdE~SW-frEtEIYqTvmLRH  264 (513)
T KOG2052|consen  210 ARQIVLQEIIGKGRFGEVWRGRWRG------------------------EDVAVKIFSSRDERSW-FRETEIYQTVMLRH  264 (513)
T ss_pred             hheeEEEEEecCccccceeeccccC------------------------CceEEEEecccchhhh-hhHHHHHHHHHhcc
Confidence            4788999999999999999999973                        4789998876654332 22345555667899


Q ss_pred             CCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcC------
Q 024842          105 RNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSL------  178 (262)
Q Consensus       105 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~------  178 (262)
                      +||+.+++.-.     . ....-..+|++++|.+.|||+|++.     ...++.+....++..+++||+|||..      
T Consensus       265 ENILgFIaaD~-----~-~~gs~TQLwLvTdYHe~GSL~DyL~-----r~tv~~~~ml~LalS~AsGLaHLH~eI~GTqg  333 (513)
T KOG2052|consen  265 ENILGFIAADN-----K-DNGSWTQLWLVTDYHEHGSLYDYLN-----RNTVTTEGMLKLALSIASGLAHLHMEIVGTQG  333 (513)
T ss_pred             chhhhhhhccc-----c-CCCceEEEEEeeecccCCcHHHHHh-----hccCCHHHHHHHHHHHhhhHHHHHHHHhcCCC
Confidence            99999997653     1 1233467999999999999999995     36699999999999999999999952      


Q ss_pred             CCCeeecCCCCCcEEEecCCCCCCceEEeeccceeecccc---------CccCcccCCcccchh-hhhhhhhhhhhcCcc
Q 024842          179 EPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSK---------FALGQRRYSCRNGLL-SIVLHLSELLSCGTV  248 (262)
Q Consensus       179 ~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~---------~~~~~~~~~~~~d~~-s~g~~~~e~~~~~~v  248 (262)
                      .|.|.|||||..|||+.+++    .+.|+|+|+|....+.         ...|++.|++||-+- ++.....|-+.+.||
T Consensus       334 KPaIAHRDlKSKNILVKkn~----~C~IADLGLAv~h~~~t~~idi~~N~rVGTKRYMAPEvLdetin~~~Fesyk~ADI  409 (513)
T KOG2052|consen  334 KPAIAHRDLKSKNILVKKNG----TCCIADLGLAVRHDSDTDTIDIPPNPRVGTKRYMAPEVLDETINMKHFESYKRADI  409 (513)
T ss_pred             CchhhccccccccEEEccCC----cEEEeeceeeEEecccCCcccCCCCCccceeeccChHHhhhhcChhhhhhhhHHHH
Confidence            25799999999999998887    7999999999876543         346999999998652 334445555667888


Q ss_pred             cchheeheecc
Q 024842          249 RVIQILMRELM  259 (262)
Q Consensus       249 ~~~g~~~~~l~  259 (262)
                      |++|+++||+.
T Consensus       410 YafgLVlWEia  420 (513)
T KOG2052|consen  410 YAFGLVLWEIA  420 (513)
T ss_pred             HHHHHHHHHHH
Confidence            88888888864

>PHA02988 hypothetical protein; Provisional

Probab=99.96  E-value=6e-30  Score=209.01  Aligned_cols=198  Identities=14%  Similarity=0.126  Sum_probs=148.5

Q ss_pred             eecCCceEEE--EEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc---hHHHHHHHHHH
Q 024842           22 WINENRYRIL--RQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN---NEQLEMVREEI   96 (262)
Q Consensus        22 ~~~~~~y~~~--~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~---~~~~~~~~~E~   96 (262)
                      .++.++++..  ..|++|+++.||+|...  +                      +.||+|.+....   ....+.+.+|+
T Consensus        14 ~i~~~~i~~~~~~~i~~g~~~~v~~~~~~--~----------------------~~vavK~~~~~~~~~~~~~~~~~~E~   69 (283)
T PHA02988         14 CIESDDIDKYTSVLIKENDQNSIYKGIFN--N----------------------KEVIIRTFKKFHKGHKVLIDITENEI   69 (283)
T ss_pred             ecCHHHcCCCCCeEEeeCCceEEEEEEEC--C----------------------EEEEEEeccccccccHHHHHHHHHHH
Confidence            3444555555  67999999999999873  2                      367777765432   22356788999


Q ss_pred             HHhhhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHH
Q 024842           97 RVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMH  176 (262)
Q Consensus        97 ~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH  176 (262)
                      .+++.++||||+++++++...      .......+++|||+.+|+|.+++.    ....+++...+.++.|++.||.|||
T Consensus        70 ~~l~~l~h~nIv~~~g~~~~~------~~~~~~~~lv~Ey~~~g~L~~~l~----~~~~~~~~~~~~i~~~i~~~l~~lH  139 (283)
T PHA02988         70 KNLRRIDSNNILKIYGFIIDI------VDDLPRLSLILEYCTRGYLREVLD----KEKDLSFKTKLDMAIDCCKGLYNLY  139 (283)
T ss_pred             HHHHhcCCCCEEEEeeeEEec------ccCCCceEEEEEeCCCCcHHHHHh----hCCCCChhHHHHHHHHHHHHHHHHH
Confidence            999999999999999987410      022356889999999999999886    3455899999999999999999999


Q ss_pred             cC-CCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC--ccCcccCCcccchhhhhhhhhhhhhcCcccchhe
Q 024842          177 SL-EPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF--ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQI  253 (262)
Q Consensus       177 ~~-~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~--~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~  253 (262)
                      +. +  ++||||||+||+++.++    .+||+|||++.......  ..++..|.+||.+....   .......|+||+|+
T Consensus       140 ~~~~--~~Hrdlkp~nill~~~~----~~kl~dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~---~~~~~k~Di~SlGv  210 (283)
T PHA02988        140 KYTN--KPYKNLTSVSFLVTENY----KLKIICHGLEKILSSPPFKNVNFMVYFSYKMLNDIF---SEYTIKDDIYSLGV  210 (283)
T ss_pred             hcCC--CCCCcCChhhEEECCCC----cEEEcccchHhhhccccccccCcccccCHHHhhhcc---ccccchhhhhHHHH
Confidence            84 6  88999999999998776    69999999987654322  23556677776543211   12233578888888


Q ss_pred             eheecccCC
Q 024842          254 LMRELMFGR  262 (262)
Q Consensus       254 ~~~~l~~G~  262 (262)
                      ++|||++|+
T Consensus       211 il~el~~g~  219 (283)
T PHA02988        211 VLWEIFTGK  219 (283)
T ss_pred             HHHHHHHCC
Confidence            888888774

>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

Probab=99.96  E-value=1.3e-29  Score=204.00  Aligned_cols=189  Identities=21%  Similarity=0.257  Sum_probs=143.4

Q ss_pred             cCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCC
Q 024842           24 NENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFS  103 (262)
Q Consensus        24 ~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~  103 (262)
                      +.++|++.+.||+|+||.||++.+...                       ..+++|....... ....+.+|+.+++.++
T Consensus         2 ~~~~~~~~~~lg~G~~~~vy~~~~~~~-----------------------~~~a~K~~~~~~~-~~~~~~~e~~~l~~l~   57 (256)
T cd05114           2 NPSELTFMKELGSGQFGVVHLGKWRAQ-----------------------IKVAIKAINEGAM-SEEDFIEEAKVMMKLS   57 (256)
T ss_pred             CHHHcEEeeEecCCcCceEEEEEeccC-----------------------ceEEEEecccCCc-cHHHHHHHHHHHHHCC
Confidence            346799999999999999999987532                       2577776653322 2356788999999999


Q ss_pred             CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCee
Q 024842          104 HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYA  183 (262)
Q Consensus       104 h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~iv  183 (262)
                      ||||+++++.+          ......+++|||+.+++|.+++..   ....+++..++.++.|++.||.|||+.+  ++
T Consensus        58 h~~i~~~~~~~----------~~~~~~~iv~e~~~~~~L~~~~~~---~~~~~~~~~~~~~~~~i~~~l~~lH~~~--i~  122 (256)
T cd05114          58 HPKLVQLYGVC----------TQQKPLYIVTEFMENGCLLNYLRQ---RQGKLSKDMLLSMCQDVCEGMEYLERNS--FI  122 (256)
T ss_pred             CCCceeEEEEE----------ccCCCEEEEEEcCCCCcHHHHHHh---CccCCCHHHHHHHHHHHHHHHHHHHHCC--cc
Confidence            99999999887          335678999999999999988752   2345899999999999999999999988  99


Q ss_pred             ecCCCCCcEEEecCCCCCCceEEeeccceeeccccCc------cCcccCCcccchhhhhhhhhhhhhcCcccchheehee
Q 024842          184 HNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKFA------LGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRE  257 (262)
Q Consensus       184 H~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~~------~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~  257 (262)
                      |+||+|+||+++.++    .++|+|||.+........      .....|.+||.+..-.     .....|+|++|+++|+
T Consensus       123 H~dl~p~ni~i~~~~----~~kl~d~g~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-----~~~~~Di~s~G~~l~e  193 (256)
T cd05114         123 HRDLAARNCLVSSTG----VVKVSDFGMTRYVLDDEYTSSSGAKFPVKWSPPEVFNFSK-----YSSKSDVWSFGVLMWE  193 (256)
T ss_pred             ccccCcceEEEcCCC----eEEECCCCCccccCCCceeccCCCCCchhhCChhhcccCc-----cchhhhhHHHHHHHHH
Confidence            999999999998766    699999999876532221      1223466666443221     1123677777777777


Q ss_pred             ccc
Q 024842          258 LMF  260 (262)
Q Consensus       258 l~~  260 (262)
                      |++
T Consensus       194 l~~  196 (256)
T cd05114         194 VFT  196 (256)
T ss_pred             HHc
Confidence            766

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h

>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

Probab=99.96  E-value=1.5e-29  Score=208.07  Aligned_cols=190  Identities=18%  Similarity=0.302  Sum_probs=150.4

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCCC
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSH  104 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~h  104 (262)
                      ..+|++.+.||.|++|.||++.+..+++                      .+++|.+........+.+.+|+.+++.++|
T Consensus        18 ~~~y~~~~~lg~g~~g~vy~~~~~~~~~----------------------~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h   75 (296)
T cd06655          18 KKKYTRYEKIGQGASGTVFTAIDVATGQ----------------------EVAIKQINLQKQPKKELIINEILVMKELKN   75 (296)
T ss_pred             cceEEEEEEEecCCCeEEEEEEEcCCCc----------------------EEEEEEEecccCchHHHHHHHHHHHHhcCC
Confidence            4579999999999999999999876554                      677777665544455678899999999999


Q ss_pred             CCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeee
Q 024842          105 RNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAH  184 (262)
Q Consensus       105 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH  184 (262)
                      ||++++++.+.          .....++++|++.+++|.+++.     ...+++.++..++.|++.||.|||+.+  ++|
T Consensus        76 ~~iv~~~~~~~----------~~~~~~lv~e~~~~~~L~~~~~-----~~~l~~~~~~~i~~~l~~al~~LH~~~--i~H  138 (296)
T cd06655          76 PNIVNFLDSFL----------VGDELFVVMEYLAGGSLTDVVT-----ETCMDEAQIAAVCRECLQALEFLHANQ--VIH  138 (296)
T ss_pred             CceeeeeeeEe----------cCceEEEEEEecCCCcHHHHHH-----hcCCCHHHHHHHHHHHHHHHHHHHHCC--ccc
Confidence            99999999873          3567999999999999998774     235899999999999999999999998  999


Q ss_pred             cCCCCCcEEEecCCCCCCceEEeeccceeeccccC-----ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecc
Q 024842          185 NDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELM  259 (262)
Q Consensus       185 ~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~  259 (262)
                      +||+|+||+++.++    .++|+|||++.......     ..++..|.+||.+.+-..     ....|+|++|+++|+|+
T Consensus       139 ~dL~p~Nili~~~~----~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~-----~~~~Dv~slGvil~~ll  209 (296)
T cd06655         139 RDIKSDNVLLGMDG----SVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAY-----GPKVDIWSLGIMAIEMV  209 (296)
T ss_pred             CCCCHHHEEECCCC----CEEEccCccchhcccccccCCCcCCCccccCcchhcCCCC-----CchhhHHHHHHHHHHHH
Confidence            99999999998766    69999999987654322     234556667665432211     12367777777777777


Q ss_pred             cCC
Q 024842          260 FGR  262 (262)
Q Consensus       260 ~G~  262 (262)
                      +|+
T Consensus       210 tg~  212 (296)
T cd06655         210 EGE  212 (296)
T ss_pred             hCC
Confidence            764

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

Probab=99.96  E-value=2e-29  Score=206.88  Aligned_cols=203  Identities=20%  Similarity=0.322  Sum_probs=152.2

Q ss_pred             ceeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc-chHHHHHHHHHHHH
Q 024842           20 DVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ-NNEQLEMVREEIRV   98 (262)
Q Consensus        20 ~~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~-~~~~~~~~~~E~~~   98 (262)
                      ...+..++|++.+.||+|+||.||++.+....+.                 .....+++|..... .......+.+|+.+
T Consensus         6 ~~~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~-----------------~~~~~~a~k~~~~~~~~~~~~~~~~E~~~   68 (293)
T cd05053           6 EWELPRDRLTLGKPLGEGAFGQVVKAEAVGLDNP-----------------NETSTVAVKMLKDDATEKDLSDLVSEMEM   68 (293)
T ss_pred             ccccCHhHeEEeeEecccccccEEEEEEecCCCC-----------------CCceeEEEEEccCCCCHHHHHHHHHHHHH
Confidence            3456678999999999999999999987654321                 12346788877643 23344668889999


Q ss_pred             hhhC-CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhh------------hcCCCCCHHHHHHHH
Q 024842           99 SSLF-SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQ------------TKKEFFSTSDVLQIF  165 (262)
Q Consensus        99 l~~l-~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~------------~~~~~~~~~~~~~i~  165 (262)
                      ++.+ +|+||+++++.+          ...+..+++|||+.+++|.+++....            .....+++..++.++
T Consensus        69 l~~l~~h~~i~~~~~~~----------~~~~~~~li~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~  138 (293)
T cd05053          69 MKMIGKHKNIINLLGVC----------TQEGPLYVVVEYAAHGNLRDFLRARRPPGEYASPDDPRPPEETLTQKDLVSFA  138 (293)
T ss_pred             HHhhcCCCCeeeEEEEE----------cCCCCeEEEEEeCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHH
Confidence            9999 799999999887          33567899999999999999886421            223568999999999


Q ss_pred             HHHHHHHHHHHcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccCc-------cCcccCCcccchhhhhhh
Q 024842          166 YQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKFA-------LGQRRYSCRNGLLSIVLH  238 (262)
Q Consensus       166 ~ql~~~l~~lH~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~~-------~~~~~~~~~~d~~s~g~~  238 (262)
                      .|++.||.|||+.+  ++|+||||+||+++.++    .++|+|||++........       .....|.+||.+..-.  
T Consensus       139 ~qi~~al~~LH~~~--ivH~dlkp~Nil~~~~~----~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~--  210 (293)
T cd05053         139 YQVARGMEFLASKK--CIHRDLAARNVLVTEDH----VMKIADFGLARDIHHIDYYRKTTNGRLPVKWMAPEALFDRV--  210 (293)
T ss_pred             HHHHHHHHHHHHCC--ccccccceeeEEEcCCC----eEEeCccccccccccccceeccCCCCCCccccCHHHhccCC--
Confidence            99999999999988  99999999999998766    699999999986543221       1223466666442211  


Q ss_pred             hhhhhhcCcccchheeheeccc
Q 024842          239 LSELLSCGTVRVIQILMRELMF  260 (262)
Q Consensus       239 ~~e~~~~~~v~~~g~~~~~l~~  260 (262)
                         .....|+|++|+++|+|++
T Consensus       211 ---~~~~~Di~slG~il~el~~  229 (293)
T cd05053         211 ---YTHQSDVWSFGVLLWEIFT  229 (293)
T ss_pred             ---cCcccceeehhhHHHHHhc
Confidence               1123677777777777765

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,

>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

Probab=99.96  E-value=2.4e-29  Score=205.82  Aligned_cols=195  Identities=20%  Similarity=0.279  Sum_probs=142.3

Q ss_pred             ceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc--hHHHHHHHHHHHHhhhC--
Q 024842           27 RYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN--NEQLEMVREEIRVSSLF--  102 (262)
Q Consensus        27 ~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~--~~~~~~~~~E~~~l~~l--  102 (262)
                      +|++.+.||+|+||.||+|++..+++                      .+++|.+....  ........+|+.+++.+  
T Consensus         1 ~y~~~~~lg~g~~g~v~~~~~~~~~~----------------------~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~   58 (288)
T cd07863           1 QYEPVAEIGVGAYGTVYKARDPHSGH----------------------FVALKSVRVQTNEDGLPLSTVREVALLKRLEA   58 (288)
T ss_pred             CceEeeEEeecCCeEEEEEEECCCCc----------------------EEEEEEeccCcCCCCCchHHHHHHHHHHHhhh
Confidence            58999999999999999999987765                      45666544321  11122344566666554  


Q ss_pred             -CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCC
Q 024842          103 -SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPP  181 (262)
Q Consensus       103 -~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~  181 (262)
                       +||||+++++++...     ........+++||++. ++|.+++...  ....+++..++.++.|++.||.|||+.+  
T Consensus        59 ~~h~ni~~~~~~~~~~-----~~~~~~~~~lv~e~~~-~~l~~~~~~~--~~~~~~~~~~~~~~~qi~~al~~lH~~~--  128 (288)
T cd07863          59 FDHPNIVRLMDVCATS-----RTDRETKVTLVFEHVD-QDLRTYLDKV--PPPGLPAETIKDLMRQFLRGLDFLHANC--  128 (288)
T ss_pred             cCCCCeeeeeeeeccc-----cCCCCceEEEEEcccc-cCHHHHHHhc--CCCCCCHHHHHHHHHHHHHHHHHHHhCC--
Confidence             799999999876421     1122456889999887 4787776532  2234899999999999999999999998  


Q ss_pred             eeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC----ccCcccCCcccchhhhhhhhhhhhhcCcccchheehee
Q 024842          182 YAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRE  257 (262)
Q Consensus       182 ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~  257 (262)
                      ++|+||||+||+++.++    .+||+|||++.......    ..++..|.+||.+....     .....|+||+|+++|+
T Consensus       129 ivH~dikp~Nili~~~~----~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-----~~~~~DiwslG~~l~~  199 (288)
T cd07863         129 IVHRDLKPENILVTSGG----QVKLADFGLARIYSCQMALTPVVVTLWYRAPEVLLQST-----YATPVDMWSVGCIFAE  199 (288)
T ss_pred             eecCCCCHHHEEECCCC----CEEECccCccccccCcccCCCccccccccCchHhhCCC-----CCCcchhhhHHHHHHH
Confidence            99999999999998776    69999999998654332    24566788887553321     2234688888888888


Q ss_pred             cccCC
Q 024842          258 LMFGR  262 (262)
Q Consensus       258 l~~G~  262 (262)
                      |++|+
T Consensus       200 l~~g~  204 (288)
T cd07863         200 MFRRK  204 (288)
T ss_pred             HHhCC
Confidence            87764

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou

>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

Probab=99.96  E-value=1.6e-29  Score=203.98  Aligned_cols=191  Identities=19%  Similarity=0.285  Sum_probs=142.7

Q ss_pred             ecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhC
Q 024842           23 INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLF  102 (262)
Q Consensus        23 ~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l  102 (262)
                      +..++|++.+.||+|++|.||+|.+..+                       +.+++|.+..... ..+.+.+|+.+++.+
T Consensus         3 ~~~~~~~~~~~lg~g~~~~v~~~~~~~~-----------------------~~v~iK~~~~~~~-~~~~~~~e~~~l~~l   58 (261)
T cd05068           3 IDRTSIQLLRKLGAGQFGEVWEGLWNNT-----------------------TPVAVKTLKPGTM-DPKDFLAEAQIMKKL   58 (261)
T ss_pred             cchhheeeEEEecccCCccEEEEEecCC-----------------------eEEEEEeeCCCcc-cHHHHHHHHHHHHHC
Confidence            4567899999999999999999986432                       3577777654432 245688899999999


Q ss_pred             CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCe
Q 024842          103 SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPY  182 (262)
Q Consensus       103 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~i  182 (262)
                      +|||++++++.+          ......+++||++.+++|.+++....  ...+++..+..++.|++.||.+||+.+  +
T Consensus        59 ~h~~i~~~~~~~----------~~~~~~~lv~e~~~~~~L~~~~~~~~--~~~~~~~~~~~~~~~i~~~l~~lH~~~--i  124 (261)
T cd05068          59 RHPKLIQLYAVC----------TLEEPIYIVTELMKYGSLLEYLQGGA--GRALKLPQLIDMAAQVASGMAYLEAQN--Y  124 (261)
T ss_pred             CCCCccceeEEE----------ecCCCeeeeeecccCCcHHHHHhccC--CCCCCHHHHHHHHHHHHHHHHHHHhCC--e
Confidence            999999999876          33566899999999999999886322  245899999999999999999999988  9


Q ss_pred             eecCCCCCcEEEecCCCCCCceEEeeccceeeccccCcc---C---cccCCcccchhhhhhhhhhhhhcCcccchheehe
Q 024842          183 AHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKFAL---G---QRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMR  256 (262)
Q Consensus       183 vH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~~~---~---~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~  256 (262)
                      +|+||||+||+++.++    .++|+|||++.........   +   ...|.+||.+..-.     .....|+||+|++++
T Consensus       125 ~H~dl~p~Nil~~~~~----~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-----~~~~~Di~slG~~l~  195 (261)
T cd05068         125 IHRDLAARNVLVGENN----ICKVADFGLARVIKEDIYEAREGAKFPIKWTAPEAALYNR-----FSIKSDVWSFGILLT  195 (261)
T ss_pred             eeccCCcceEEEcCCC----CEEECCcceEEEccCCcccccCCCcCceeccCccccccCC-----CCchhhHHHHHHHHH
Confidence            9999999999998776    6999999999876432211   1   12455665332111     112345666666666


Q ss_pred             eccc
Q 024842          257 ELMF  260 (262)
Q Consensus       257 ~l~~  260 (262)
                      +|++
T Consensus       196 el~t  199 (261)
T cd05068         196 EIVT  199 (261)
T ss_pred             HHHh
Confidence            6555

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a

>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn

Probab=99.96  E-value=1.9e-29  Score=203.51  Aligned_cols=192  Identities=19%  Similarity=0.259  Sum_probs=147.1

Q ss_pred             eecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhh
Q 024842           22 WINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSL  101 (262)
Q Consensus        22 ~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~  101 (262)
                      .+..++|++.++||+|++|.||+|.+...                       ..+++|....... ..+.+.+|+.+++.
T Consensus         2 ~~~~~~~~~~~~lg~g~~g~v~~~~~~~~-----------------------~~v~iK~~~~~~~-~~~~~~~e~~~l~~   57 (261)
T cd05072           2 EIPRESIKLVKKLGAGQFGEVWMGYYNNS-----------------------TKVAVKTLKPGTM-SVQAFLEEANLMKT   57 (261)
T ss_pred             cCchHHeEEeeecCCcCCceEEEEEecCC-----------------------ceEEEEEccCCch-hHHHHHHHHHHHHh
Confidence            35678999999999999999999986432                       2577776654332 34678899999999


Q ss_pred             CCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCC
Q 024842          102 FSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPP  181 (262)
Q Consensus       102 l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~  181 (262)
                      ++|+||+++++.+          ......+++||++.+++|.+++...  ....+++..++.++.|++.||.|||+.+  
T Consensus        58 l~h~~i~~~~~~~----------~~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~~~~l~~~l~~LH~~~--  123 (261)
T cd05072          58 LQHDKLVRLYAVV----------TKEEPIYIITEYMAKGSLLDFLKSD--EGGKVLLPKLIDFSAQIAEGMAYIERKN--  123 (261)
T ss_pred             CCCCCeeeEEEEE----------cCCCCcEEEEecCCCCcHHHHHHHh--cCCCCCHHHHHHHHHHHHHHHHHHHHCC--
Confidence            9999999998876          3356689999999999999987632  2345888999999999999999999988  


Q ss_pred             eeecCCCCCcEEEecCCCCCCceEEeeccceeeccccCc------cCcccCCcccchhhhhhhhhhhhhcCcccchheeh
Q 024842          182 YAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKFA------LGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILM  255 (262)
Q Consensus       182 ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~~------~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~  255 (262)
                      ++|+||||+||+++.++    .++|+|||++........      .++..|.+||.+..-.     .....|+|++|+++
T Consensus       124 i~H~dl~p~nili~~~~----~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-----~~~~~Di~slG~~l  194 (261)
T cd05072         124 YIHRDLRAANVLVSESL----MCKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFGS-----FTIKSDVWSFGILL  194 (261)
T ss_pred             eeccccchhhEEecCCC----cEEECCCccceecCCCceeccCCCccceecCCHHHhccCC-----CChhhhhhhhHHHH
Confidence            99999999999998766    699999999987653221      1223466666442211     11135777777777


Q ss_pred             eeccc
Q 024842          256 RELMF  260 (262)
Q Consensus       256 ~~l~~  260 (262)
                      |+|++
T Consensus       195 ~~l~t  199 (261)
T cd05072         195 YEIVT  199 (261)
T ss_pred             HHHHc
Confidence            77776

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa

>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

Probab=99.96  E-value=1.2e-29  Score=205.88  Aligned_cols=205  Identities=20%  Similarity=0.267  Sum_probs=154.3

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhC-C
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLF-S  103 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l-~  103 (262)
                      .++|++.+.||+|++|.||+|.+..+++                      .+++|.+..... ..+.+.+|+.+++.+ +
T Consensus         5 ~~~y~~~~~l~~g~~~~v~~~~~~~~~~----------------------~~~~k~~~~~~~-~~~~~~~e~~~l~~~~~   61 (275)
T cd06608           5 TGIFELVEVIGEGTYGKVYKARHKKTGQ----------------------LVAIKIMDIIED-EEEEIKEEYNILRKYSN   61 (275)
T ss_pred             hhheeheeeecCCCCeEEEEEEECCCCc----------------------EEEEEEEecCch-hHHHHHHHHHHHHHhcC
Confidence            5789999999999999999999876543                      577776654433 336788999999998 6


Q ss_pred             CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCee
Q 024842          104 HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYA  183 (262)
Q Consensus       104 h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~iv  183 (262)
                      |+|++++++.+.....    .......+++|+|+.+++|.+++......+..+++..++.++.|++.||.|||+.+  ++
T Consensus        62 h~~i~~~~~~~~~~~~----~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~lH~~~--i~  135 (275)
T cd06608          62 HPNIATFYGAFIKKNP----PGNDDQLWLVMELCGGGSVTDLVKGLRKKGKRLKEEWIAYILRETLRGLAYLHENK--VI  135 (275)
T ss_pred             CCChheEEEEEEecCC----CCcceEEEEEEEcCCCCcHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhcCC--cc
Confidence            9999999998742110    02245689999999999999988755544567999999999999999999999998  99


Q ss_pred             ecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-----ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheec
Q 024842          184 HNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMREL  258 (262)
Q Consensus       184 H~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l  258 (262)
                      |+||+|+||+++.++    .++|+|||++.......     ..++..|.+||.+-+...........+|+|++|+++++|
T Consensus       136 H~~l~p~ni~~~~~~----~~~l~d~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slG~il~~l  211 (275)
T cd06608         136 HRDIKGQNILLTKNA----EVKLVDFGVSAQLDSTLGRRNTFIGTPYWMAPEVIACDEQPDASYDARSDVWSLGITAIEL  211 (275)
T ss_pred             cCCCCHHHEEEccCC----eEEECCCccceecccchhhhcCccccccccCHhHhcccccccCCccccccHHHhHHHHHHH
Confidence            999999999998766    69999999987654321     234555666664422211111222346788888888887


Q ss_pred             ccCC
Q 024842          259 MFGR  262 (262)
Q Consensus       259 ~~G~  262 (262)
                      ++|+
T Consensus       212 ~~g~  215 (275)
T cd06608         212 ADGK  215 (275)
T ss_pred             HhCC
Confidence            7764

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I

>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

Probab=99.96  E-value=1.6e-29  Score=206.29  Aligned_cols=197  Identities=19%  Similarity=0.221  Sum_probs=144.6

Q ss_pred             CceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc-hHHHHHHHHHHHH-hhhCC
Q 024842           26 NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN-NEQLEMVREEIRV-SSLFS  103 (262)
Q Consensus        26 ~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~-~~~~~~~~~E~~~-l~~l~  103 (262)
                      ++|++.+.||+|+||.||++.+..+++                      .||+|++.... ......+..|... ++.++
T Consensus         1 ~~~~~~~~ig~g~~g~v~~~~~~~~~~----------------------~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~   58 (283)
T cd06617           1 DDLEVIEELGRGAYGVVDKMRHVPTGT----------------------IMAVKRIRATVNSQEQKRLLMDLDISMRSVD   58 (283)
T ss_pred             CCceEEEEecccCCeEEEEEEEcCCCc----------------------EEEEEEEecCCCcHHHHHHHHHHHHHHHHcC
Confidence            479999999999999999999887655                      67777665432 2223344455554 67778


Q ss_pred             CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcC-CCCe
Q 024842          104 HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSL-EPPY  182 (262)
Q Consensus       104 h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~-~~~i  182 (262)
                      |||++++++.+.          .....+++|||+. ++|.+++.........+++..++.++.|++.||.|||++ +  +
T Consensus        59 ~~~iv~~~~~~~----------~~~~~~lv~e~~~-~~l~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~--i  125 (283)
T cd06617          59 CPYTVTFYGALF----------REGDVWICMEVMD-TSLDKFYKKVYDKGLTIPEDILGKIAVSIVKALEYLHSKLS--V  125 (283)
T ss_pred             CCCeeeeeEEEe----------cCCcEEEEhhhhc-ccHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhcCC--e
Confidence            999999999873          3567899999876 688887765444456799999999999999999999986 7  9


Q ss_pred             eecCCCCCcEEEecCCCCCCceEEeeccceeeccccC----ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheec
Q 024842          183 AHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMREL  258 (262)
Q Consensus       183 vH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l  258 (262)
                      +||||||+||+++.++    .+||+|||++..+....    ..++..|.+||.+-+... ........|+|++|+++++|
T Consensus       126 ~h~dlkp~nil~~~~~----~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~-~~~~~~~~Di~slG~~l~~l  200 (283)
T cd06617         126 IHRDVKPSNVLINRNG----QVKLCDFGISGYLVDSVAKTIDAGCKPYMAPERINPELN-QKGYDVKSDVWSLGITMIEL  200 (283)
T ss_pred             ecCCCCHHHEEECCCC----CEEEeecccccccccccccccccCCccccChhhcCCccc-ccccCccccchhhHHHHHHH
Confidence            9999999999998776    69999999988654321    234555666664322100 01111246788888888887


Q ss_pred             ccCC
Q 024842          259 MFGR  262 (262)
Q Consensus       259 ~~G~  262 (262)
                      ++|+
T Consensus       201 ~~g~  204 (283)
T cd06617         201 ATGR  204 (283)
T ss_pred             HhCC
Confidence            7774

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs

>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

Probab=99.96  E-value=1.3e-29  Score=207.17  Aligned_cols=191  Identities=26%  Similarity=0.318  Sum_probs=145.6

Q ss_pred             CceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc--hHHHHHHHHHHHHhhhCC
Q 024842           26 NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN--NEQLEMVREEIRVSSLFS  103 (262)
Q Consensus        26 ~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~--~~~~~~~~~E~~~l~~l~  103 (262)
                      ++|++.+.||+|++|.||+|++..+++                      .+++|++....  ....+.+.+|+.+++.++
T Consensus         1 ~~y~~~~~l~~g~~~~v~~~~~~~~~~----------------------~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~   58 (286)
T cd07847           1 EKYEKLSKIGEGSYGVVFKCRNRETGQ----------------------IVAIKKFVESEDDPVIKKIALREIRMLKQLK   58 (286)
T ss_pred             CceeeeeeecccCCeEEEEEEECCCCc----------------------EEEEEEEeecccCccccHHHHHHHHHHHhCC
Confidence            479999999999999999999876544                      57777664332  222355778999999999


Q ss_pred             CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCee
Q 024842          104 HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYA  183 (262)
Q Consensus       104 h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~iv  183 (262)
                      |+|++++++.+          ......+++|||+.++.+..+..    ....+++..++.++.|++.||.|||+.+  ++
T Consensus        59 h~~i~~~~~~~----------~~~~~~~~v~e~~~~~~l~~~~~----~~~~~~~~~~~~~~~ql~~~l~~LH~~~--i~  122 (286)
T cd07847          59 HPNLVNLIEVF----------RRKRKLHLVFEYCDHTVLNELEK----NPRGVPEHLIKKIIWQTLQAVNFCHKHN--CI  122 (286)
T ss_pred             CCCEeeeeeEE----------eeCCEEEEEEeccCccHHHHHHh----CCCCCCHHHHHHHHHHHHHHHHHHHHCC--ce
Confidence            99999999987          33567899999999888876654    3445899999999999999999999988  99


Q ss_pred             ecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-----ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheec
Q 024842          184 HNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMREL  258 (262)
Q Consensus       184 H~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l  258 (262)
                      |+||||+||+++.++    .++|+|||++.......     ..++..|.+||.+.+-.    ......|+|++|+++++|
T Consensus       123 H~dl~p~nil~~~~~----~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~----~~~~~~Di~slG~i~~~l  194 (286)
T cd07847         123 HRDVKPENILITKQG----QIKLCDFGFARILTGPGDDYTDYVATRWYRAPELLVGDT----QYGPPVDVWAIGCVFAEL  194 (286)
T ss_pred             ecCCChhhEEEcCCC----cEEECccccceecCCCcccccCcccccccCCHHHHhCCC----CcCchhhhHHHHHHHHHH
Confidence            999999999998776    69999999998765432     12344555555432110    011236777777777777


Q ss_pred             ccCC
Q 024842          259 MFGR  262 (262)
Q Consensus       259 ~~G~  262 (262)
                      ++|+
T Consensus       195 ~~g~  198 (286)
T cd07847         195 LTGQ  198 (286)
T ss_pred             HhCC
Confidence            7764

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio

>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

Probab=99.96  E-value=2.5e-29  Score=202.25  Aligned_cols=190  Identities=23%  Similarity=0.304  Sum_probs=148.0

Q ss_pred             ceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc--chHHHHHHHHHHHHhhhCCC
Q 024842           27 RYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ--NNEQLEMVREEIRVSSLFSH  104 (262)
Q Consensus        27 ~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~--~~~~~~~~~~E~~~l~~l~h  104 (262)
                      +|++.+.||.|+||.||.+++..+++                      .+++|.+...  .....+.+.+|+.+++.++|
T Consensus         1 ~y~~~~~ig~g~~g~v~~~~~~~~~~----------------------~~~~k~~~~~~~~~~~~~~~~~e~~~l~~~~h   58 (256)
T cd08221           1 HYIPIRVLGKGAFGEATLYRRTEDDS----------------------LVVWKEVNLTRLSEKERRDALNEIVILSLLQH   58 (256)
T ss_pred             CceEeeEecccCCceEEEEEEcCCCc----------------------EEEEEEEeecccchhHHHHHHHHHHHHHhCCC
Confidence            58999999999999999999876554                      5777765543  23445678899999999999


Q ss_pred             CCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeee
Q 024842          105 RNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAH  184 (262)
Q Consensus       105 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH  184 (262)
                      +||+++++.+.          .....+++|||+.+++|.+++....  ...+++..+..++.|++.+|.|||+.+  ++|
T Consensus        59 ~~i~~~~~~~~----------~~~~~~~~~e~~~~~~L~~~~~~~~--~~~~~~~~~~~~~~~l~~~l~~lh~~~--i~h  124 (256)
T cd08221          59 PNIIAYYNHFM----------DDNTLLIEMEYANGGTLYDKIVRQK--GQLFEEEMVLWYLFQIVSAVSYIHKAG--ILH  124 (256)
T ss_pred             CCeeEEEeEEe----------cCCeEEEEEEecCCCcHHHHHHhcc--ccCCCHHHHHHHHHHHHHHHHHHHhCC--ccc
Confidence            99999999883          3567899999999999999886321  345899999999999999999999998  999


Q ss_pred             cCCCCCcEEEecCCCCCCceEEeeccceeeccccC-----ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecc
Q 024842          185 NDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELM  259 (262)
Q Consensus       185 ~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~  259 (262)
                      +||+|+||+++.++    .+||+|||++.......     ..++..|.+|+.+....     .....|+|++|+++++|+
T Consensus       125 ~dl~p~ni~~~~~~----~~kl~d~~~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~-----~~~~~Dv~slG~i~~~l~  195 (256)
T cd08221         125 RDIKTLNIFLTKAG----LIKLGDFGISKILGSEYSMAETVVGTPYYMSPELCQGVK-----YNFKSDIWALGCVLYELL  195 (256)
T ss_pred             cCCChHhEEEeCCC----CEEECcCcceEEcccccccccccCCCccccCHhhcCCCC-----CCCcchhHHHHHHHHHHH
Confidence            99999999998776    69999999998764433     23555666666432211     112356666666666666


Q ss_pred             cC
Q 024842          260 FG  261 (262)
Q Consensus       260 ~G  261 (262)
                      +|
T Consensus       196 ~g  197 (256)
T cd08221         196 TL  197 (256)
T ss_pred             HC
Confidence            65

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa

>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

Probab=99.96  E-value=1.8e-29  Score=207.58  Aligned_cols=189  Identities=26%  Similarity=0.328  Sum_probs=143.8

Q ss_pred             ceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc-----hHHHHHHHHHHHHhhh
Q 024842           27 RYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN-----NEQLEMVREEIRVSSL  101 (262)
Q Consensus        27 ~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~-----~~~~~~~~~E~~~l~~  101 (262)
                      +|++.+.||+|++|.||+|.+..+++                      .+++|++....     ......+.+|+.+++.
T Consensus         1 ~y~~~~~lg~g~~~~vy~~~~~~~~~----------------------~v~iK~~~~~~~~~~~~~~~~~~~~e~~~l~~   58 (298)
T cd07841           1 RYEKGKKLGEGTYAVVYKARDKETGR----------------------IVAIKKIKLGERKEAKDGINFTALREIKLLQE   58 (298)
T ss_pred             CceeeeeeeeccccEEEEEEECCCCc----------------------EEEEEEEeccccccccchhhHHHHHHHHHHhh
Confidence            58899999999999999999876654                      57777665442     2234556789999999


Q ss_pred             CCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCC
Q 024842          102 FSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPP  181 (262)
Q Consensus       102 l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~  181 (262)
                      ++|+|++++++.+.          .....+++||++ +++|.+++..   ....+++..++.++.|++.||.|||+++  
T Consensus        59 ~~h~~i~~~~~~~~----------~~~~~~lv~e~~-~~~L~~~i~~---~~~~~~~~~~~~~~~qi~~al~~lH~~~--  122 (298)
T cd07841          59 LKHPNIIGLLDVFG----------HKSNINLVFEFM-ETDLEKVIKD---KSIVLTPADIKSYMLMTLRGLEYLHSNW--  122 (298)
T ss_pred             cCCCCChhhhheee----------cCCEEEEEEccc-CCCHHHHHhc---cCCCCCHHHHHHHHHHHHHHHHHHHhCC--
Confidence            99999999999883          366789999999 8999988852   1226999999999999999999999998  


Q ss_pred             eeecCCCCCcEEEecCCCCCCceEEeeccceeeccccCc-----cCcccCCcccchhhhhhhhhhhhhcCcccchheehe
Q 024842          182 YAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKFA-----LGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMR  256 (262)
Q Consensus       182 ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~~-----~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~  256 (262)
                      ++|+||+|+||+++.++    .++|+|||++........     ..+..|.+||.+.+-.    ......|+|++|++++
T Consensus       123 i~H~dl~p~nill~~~~----~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~----~~~~~~Dv~slG~il~  194 (298)
T cd07841         123 ILHRDLKPNNLLIASDG----VLKLADFGLARSFGSPNRKMTHQVVTRWYRAPELLFGAR----HYGVGVDMWSVGCIFA  194 (298)
T ss_pred             eeecCCChhhEEEcCCC----CEEEccceeeeeccCCCccccccccceeeeCHHHHhCCC----CCCcHHHHHHHHHHHH
Confidence            99999999999998776    699999999987654321     2233455555432111    1112356777777777


Q ss_pred             ecccC
Q 024842          257 ELMFG  261 (262)
Q Consensus       257 ~l~~G  261 (262)
                      +|++|
T Consensus       195 e~~~g  199 (298)
T cd07841         195 ELLLR  199 (298)
T ss_pred             HHHcC
Confidence            77666

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is

>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

Probab=99.96  E-value=2.6e-29  Score=208.44  Aligned_cols=192  Identities=19%  Similarity=0.241  Sum_probs=149.3

Q ss_pred             CceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc---hHHHHHHHHHHHHhhhC
Q 024842           26 NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN---NEQLEMVREEIRVSSLF  102 (262)
Q Consensus        26 ~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~---~~~~~~~~~E~~~l~~l  102 (262)
                      ++|++.+.||+|++|.||+|.+..+++                      .+++|.+....   ....+.+..|+++++.+
T Consensus         1 ~~y~~~~~ig~g~~g~vy~~~~~~~~~----------------------~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l   58 (316)
T cd05574           1 KHFKKIKLLGKGDVGRVFLVRLKGTGK----------------------LFALKVLDKKEMIKRNKVKRVLTEQEILATL   58 (316)
T ss_pred             CceEEeeeecCCccEEEEEEEEcCCCc----------------------EEEEEEEeccccchHHHHHHHHHHHHHHHhC
Confidence            479999999999999999999876544                      67777665442   23456788999999999


Q ss_pred             CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCe
Q 024842          103 SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPY  182 (262)
Q Consensus       103 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~i  182 (262)
                      +|+||+++++.+          ......+++||++.+++|.+++...  ....+++..++.++.|++.||+|||+.+  +
T Consensus        59 ~~~~i~~~~~~~----------~~~~~~~lv~e~~~~~~L~~~~~~~--~~~~l~~~~~~~~~~qi~~~l~~lH~~~--i  124 (316)
T cd05574          59 DHPFLPTLYASF----------QTETYLCLVMDYCPGGELFRLLQRQ--PGKCLSEEVARFYAAEVLLALEYLHLLG--I  124 (316)
T ss_pred             CCCCchhheeee----------ecCCEEEEEEEecCCCCHHHHHHhC--CCCccCHHHHHHHHHHHHHHHHHHHHCC--e
Confidence            999999999887          3356789999999999999987521  2356899999999999999999999988  9


Q ss_pred             eecCCCCCcEEEecCCCCCCceEEeeccceeeccccC----------------------------------ccCcccCCc
Q 024842          183 AHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF----------------------------------ALGQRRYSC  228 (262)
Q Consensus       183 vH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~----------------------------------~~~~~~~~~  228 (262)
                      +|+||||+||+++.++    .++|+|||++.......                                  ..++..|.+
T Consensus       125 ~H~dlkp~Nili~~~~----~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~a  200 (316)
T cd05574         125 VYRDLKPENILLHESG----HIMLSDFDLSKQSDVEPPPVSKALRKGSRRSSVNSIPSETFSEEPSFRSNSFVGTEEYIA  200 (316)
T ss_pred             eccCCChHHeEEcCCC----CEEEeecchhhcccccccccccccccccccccccccchhhhcccccCCCCCCcCccCCcC
Confidence            9999999999998776    69999999987543211                                  123445666


Q ss_pred             ccchhhhhhhhhhhhhcCcccchheeheecccCC
Q 024842          229 RNGLLSIVLHLSELLSCGTVRVIQILMRELMFGR  262 (262)
Q Consensus       229 ~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~G~  262 (262)
                      ||.+....     .....|+||+|+++|+|++|+
T Consensus       201 PE~~~~~~-----~~~~~Di~slG~ll~~l~~g~  229 (316)
T cd05574         201 PEVISGDG-----HGSAVDWWTLGILLYEMLYGT  229 (316)
T ss_pred             HHHHcCCC-----CCchHHHHHHHHHHHHHhhCC
Confidence            65442221     122468888888888888774

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin

>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

Probab=99.96  E-value=2.3e-29  Score=204.76  Aligned_cols=200  Identities=16%  Similarity=0.197  Sum_probs=150.5

Q ss_pred             ecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc-hHHHHHHHHHHHHhhh
Q 024842           23 INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN-NEQLEMVREEIRVSSL  101 (262)
Q Consensus        23 ~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~-~~~~~~~~~E~~~l~~  101 (262)
                      +..++|++.+.||+|+||.||+|.+.....                 ......+++|...... ......+.+|+.+++.
T Consensus         3 ~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~-----------------~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~   65 (277)
T cd05032           3 LPREKITLIRELGQGSFGMVYEGLAKGVVK-----------------GEPETRVAIKTVNENASMRERIEFLNEASVMKE   65 (277)
T ss_pred             cchHHeeEEeEecCCCCceEEEEEEeccCC-----------------CCcceeEEEEecCCccCHHHHHHHHHHHHHHHh
Confidence            456799999999999999999999865431                 0123478888876443 3445678889999999


Q ss_pred             CCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhc------CCCCCHHHHHHHHHHHHHHHHHH
Q 024842          102 FSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTK------KEFFSTSDVLQIFYQICAGLKHM  175 (262)
Q Consensus       102 l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~------~~~~~~~~~~~i~~ql~~~l~~l  175 (262)
                      ++||||+++++.+.          .....+++|||+.+++|.+++......      ...+++..++.++.|++.||.||
T Consensus        66 ~~~~~i~~~~~~~~----------~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l  135 (277)
T cd05032          66 FNCHHVVRLLGVVS----------TGQPTLVVMELMAKGDLKSYLRSRRPEAENNPGLGPPTLQKFIQMAAEIADGMAYL  135 (277)
T ss_pred             CCCCceeEEEEEEc----------CCCCcEEEEecCCCCCHHHHHHhcccchhhccCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999873          356789999999999999988643221      22468889999999999999999


Q ss_pred             HcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-------ccCcccCCcccchhhhhhhhhhhhhcCcc
Q 024842          176 HSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-------ALGQRRYSCRNGLLSIVLHLSELLSCGTV  248 (262)
Q Consensus       176 H~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-------~~~~~~~~~~~d~~s~g~~~~e~~~~~~v  248 (262)
                      |+.+  ++|+||||+||+++.++    .++|+|||++.......       ..++..|.+||.+..-     ......|+
T Consensus       136 H~~~--i~H~di~p~nill~~~~----~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-----~~~~~~Di  204 (277)
T cd05032         136 AAKK--FVHRDLAARNCMVAEDL----TVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMAPESLKDG-----VFTTKSDV  204 (277)
T ss_pred             HhCC--ccccccChheEEEcCCC----CEEECCcccchhhccCcccccCCCCCccccccCHHHHhcC-----CCCcccch
Confidence            9988  99999999999998776    69999999987543221       1223456666644221     11223677


Q ss_pred             cchheeheeccc
Q 024842          249 RVIQILMRELMF  260 (262)
Q Consensus       249 ~~~g~~~~~l~~  260 (262)
                      |++|+++|++++
T Consensus       205 ~slG~il~el~t  216 (277)
T cd05032         205 WSFGVVLWEMAT  216 (277)
T ss_pred             HHHHHHHHHhhc
Confidence            777777777776

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological

>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

Probab=99.96  E-value=1.8e-29  Score=204.40  Aligned_cols=190  Identities=23%  Similarity=0.288  Sum_probs=146.5

Q ss_pred             ceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc------hHHHHHHHHHHHHhh
Q 024842           27 RYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN------NEQLEMVREEIRVSS  100 (262)
Q Consensus        27 ~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~------~~~~~~~~~E~~~l~  100 (262)
                      +|+..+.||+|++|.||++.+..+++                      .+++|.+....      ....+.+..|+.+++
T Consensus         1 ~~~~~~~lg~g~~~~v~~~~~~~~~~----------------------~~alk~~~~~~~~~~~~~~~~~~~~~e~~~l~   58 (268)
T cd06630           1 EWLKGQQLGTGAFSSCYQARDVKTGT----------------------LMAVKQVTYVRNTSSEQEEVVEALRKEIRLMA   58 (268)
T ss_pred             CccccceecCcCceEEEEEEEcCCCc----------------------EEEEEEeecccCCchhHHHHHHHHHHHHHHHH
Confidence            48889999999999999999876655                      56666654322      223567889999999


Q ss_pred             hCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCC
Q 024842          101 LFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEP  180 (262)
Q Consensus       101 ~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~  180 (262)
                      .++|+|++++++.+          ......+++++++.+++|.+++.    ...++++..++.++.|++.||.|||+++ 
T Consensus        59 ~l~h~~iv~~~~~~----------~~~~~~~~v~e~~~~~~L~~~l~----~~~~~~~~~~~~~~~ql~~al~~LH~~~-  123 (268)
T cd06630          59 RLNHPHIIRMLGAT----------CEDSHFNLFVEWMAGGSVSHLLS----KYGAFKEAVIINYTEQLLRGLSYLHENQ-  123 (268)
T ss_pred             HcCCCceehhhcee----------ccCCeEEEEEeccCCCcHHHHHH----HhCCCCHHHHHHHHHHHHHHHHHHHhCC-
Confidence            99999999999987          34567899999999999999886    3456899999999999999999999998 


Q ss_pred             CeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC---------ccCcccCCcccchhhhhhhhhhhhhcCcccch
Q 024842          181 PYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF---------ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVI  251 (262)
Q Consensus       181 ~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~---------~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~  251 (262)
                       ++|+||+|+||+++.++.   .++|+|||.+.......         ..++..|.+||......     .....|+|++
T Consensus       124 -i~H~~i~~~nil~~~~~~---~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~-----~~~~~Dv~sl  194 (268)
T cd06630         124 -IIHRDVKGANLLIDSTGQ---RLRIADFGAAARLAAKGTGAGEFQGQLLGTIAFMAPEVLRGEQ-----YGRSCDVWSV  194 (268)
T ss_pred             -eecCCCCHHHEEEcCCCC---EEEEcccccccccccccccCCccccccccccceeCHhHhccCC-----CCcccchHHH
Confidence             999999999999975542   59999999988765431         12344566665432211     1124677777


Q ss_pred             heeheecccCC
Q 024842          252 QILMRELMFGR  262 (262)
Q Consensus       252 g~~~~~l~~G~  262 (262)
                      |+++++|++|+
T Consensus       195 G~~l~~l~~g~  205 (268)
T cd06630         195 GCVIIEMATAK  205 (268)
T ss_pred             HHHHHHHHhCC
Confidence            77777777764

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their

>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

Probab=99.96  E-value=2.2e-29  Score=203.25  Aligned_cols=195  Identities=19%  Similarity=0.281  Sum_probs=152.9

Q ss_pred             ceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc--chHHHHHHHHHHHHhhhCCC
Q 024842           27 RYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ--NNEQLEMVREEIRVSSLFSH  104 (262)
Q Consensus        27 ~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~--~~~~~~~~~~E~~~l~~l~h  104 (262)
                      +|++.+.||.|+||.||++.+..+++                      .+++|.+...  .....+.+..|+.+++.++|
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~----------------------~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~   58 (265)
T cd08217           1 DYEVLETIGKGSFGTVRKVRRKSDGK----------------------ILVWKEIDYGNMTEKEKQQLVSEVNILRELKH   58 (265)
T ss_pred             CceeeeeeccCCCeEEEEeeecCCCC----------------------EEEEEEEecccCCHHHHHHHHHHHHHHHhcCC
Confidence            58999999999999999999887655                      5666655432  33445678889999999999


Q ss_pred             CCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHH-----cCC
Q 024842          105 RNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMH-----SLE  179 (262)
Q Consensus       105 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH-----~~~  179 (262)
                      ||++++++.+..        ......+++||++.+++|.+++........++++..++.++.|++.||.|||     +.+
T Consensus        59 ~~i~~~~~~~~~--------~~~~~~~~~~e~~~~~~L~~~l~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~~~~~~  130 (265)
T cd08217          59 PNIVRYYDRIID--------RSNQTLYIVMEYCEGGDLAQLIQKCKKERKYIEEEFIWRILTQLLLALYECHNRSDPGNT  130 (265)
T ss_pred             Cccceeeeeeec--------CCCCEEEEEehhccCCCHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhcCccccCc
Confidence            999999987642        3345689999999999999998765555667999999999999999999999     777


Q ss_pred             CCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-----ccCcccCCcccchhhhhhhhhhhhhcCcccchhee
Q 024842          180 PPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQIL  254 (262)
Q Consensus       180 ~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~  254 (262)
                        ++|+||+|+||+++.++    .++|+|||++.......     ..++..|.+||.+....     .....|+|++|++
T Consensus       131 --i~h~dl~p~nili~~~~----~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~pE~~~~~~-----~~~~~Dv~slG~i  199 (265)
T cd08217         131 --VLHRDLKPANIFLDANN----NVKLGDFGLAKILGHDSSFAKTYVGTPYYMSPEQLNHMS-----YDEKSDIWSLGCL  199 (265)
T ss_pred             --ceecCCCHHHEEEecCC----CEEEecccccccccCCcccccccccCCCccChhhhcCCC-----CCchhHHHHHHHH
Confidence              99999999999998766    79999999998765433     23556667776543221     1123678888888


Q ss_pred             heecccCC
Q 024842          255 MRELMFGR  262 (262)
Q Consensus       255 ~~~l~~G~  262 (262)
                      +++|++|+
T Consensus       200 l~~l~~g~  207 (265)
T cd08217         200 IYELCALS  207 (265)
T ss_pred             HHHHHHCC
Confidence            88887774

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.96  E-value=4.6e-29  Score=203.80  Aligned_cols=158  Identities=24%  Similarity=0.354  Sum_probs=130.8

Q ss_pred             cCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCC
Q 024842           24 NENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFS  103 (262)
Q Consensus        24 ~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~  103 (262)
                      +.++|++.+.||+|+||.||++.......                  ..+..+++|++........+.+.+|+++++.++
T Consensus         2 ~~~~~~~~~~lg~g~~g~v~~~~~~~~~~------------------~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~   63 (284)
T cd05081           2 EERHLKFIQQLGKGNFGSVELCRYDPLQD------------------NTGEVVAVKKLQHSTAEHLRDFEREIEILKSLQ   63 (284)
T ss_pred             ccccceeeeeccCCCCceEEEEEecCCcC------------------CCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCC
Confidence            45789999999999999999997532111                  124478999887766666778899999999999


Q ss_pred             CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCee
Q 024842          104 HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYA  183 (262)
Q Consensus       104 h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~iv  183 (262)
                      |||++++++.+..        ......+++|||+.+++|.+++..   ....+++..++.++.|++.||.|||+++  ++
T Consensus        64 h~~iv~~~~~~~~--------~~~~~~~lv~e~~~~~~L~~~l~~---~~~~l~~~~~~~~~~~l~~aL~~LH~~~--i~  130 (284)
T cd05081          64 HDNIVKYKGVCYS--------AGRRNLRLVMEYLPYGSLRDYLQK---HRERLDHRKLLLYASQICKGMEYLGSKR--YV  130 (284)
T ss_pred             CCCeeEEEEEEcc--------CCCCceEEEEEecCCCCHHHHHHh---cCcCCCHHHHHHHHHHHHHHHHHHHHCC--ce
Confidence            9999999886531        233468899999999999998752   2345899999999999999999999998  99


Q ss_pred             ecCCCCCcEEEecCCCCCCceEEeeccceeecc
Q 024842          184 HNDVKPGNILITCRKGQPPLAILMDFGSARPAQ  216 (262)
Q Consensus       184 H~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~  216 (262)
                      |+||||+||+++.++    .++|+|||++....
T Consensus       131 H~dlkp~nili~~~~----~~~l~dfg~~~~~~  159 (284)
T cd05081         131 HRDLATRNILVESEN----RVKIGDFGLTKVLP  159 (284)
T ss_pred             eccCCHhhEEECCCC----eEEECCCccccccc
Confidence            999999999998766    69999999998654

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th

>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

Probab=99.96  E-value=1.8e-29  Score=206.29  Aligned_cols=190  Identities=24%  Similarity=0.317  Sum_probs=149.9

Q ss_pred             ceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc--hHHHHHHHHHHHHhhhCCC
Q 024842           27 RYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN--NEQLEMVREEIRVSSLFSH  104 (262)
Q Consensus        27 ~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~--~~~~~~~~~E~~~l~~l~h  104 (262)
                      +|++.+.||.|++|.||+|.+..+++                      .+++|++....  ....+.+.+|+.+++.++|
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~----------------------~~~vK~~~~~~~~~~~~~~~~~e~~~l~~~~~   58 (286)
T cd07832           1 RYKILGRIGEGAHGIVFKAKDRETGE----------------------TVALKKVALRRLEGGIPNQALREIKALQACQH   58 (286)
T ss_pred             CceEEeecccCCCcEEEEEEECCCCc----------------------eEEEEEEEcccccchhhHHHHHHHHHHHhCCC
Confidence            58999999999999999999876654                      56777665443  3335678899999999999


Q ss_pred             CCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeee
Q 024842          105 RNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAH  184 (262)
Q Consensus       105 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH  184 (262)
                      ||++++++.+.          .....++++|++ +++|.+++..   ....+++..++.++.|++.||.|||+.+  ++|
T Consensus        59 ~~i~~~~~~~~----------~~~~~~~v~e~~-~~~L~~~~~~---~~~~~~~~~~~~~~~~i~~~l~~lH~~~--i~H  122 (286)
T cd07832          59 PYVVKLLDVFP----------HGSGFVLVMEYM-PSDLSEVLRD---EERPLPEAQVKSYMRMLLKGVAYMHANG--IMH  122 (286)
T ss_pred             CCCcceeeEEe----------cCCeeEEEeccc-CCCHHHHHHh---cCCCCCHHHHHHHHHHHHHHHHHHHHCC--eec
Confidence            99999999873          366789999999 9999988753   2356999999999999999999999998  999


Q ss_pred             cCCCCCcEEEecCCCCCCceEEeeccceeeccccC------ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheec
Q 024842          185 NDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF------ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMREL  258 (262)
Q Consensus       185 ~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~------~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l  258 (262)
                      +||||+||+++.++    .++|+|||.+.......      ..++..|.+||.+.+-..    .....|+|++|+++++|
T Consensus       123 ~dl~p~ni~~~~~~----~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~----~~~~~Di~slG~~l~~l  194 (286)
T cd07832         123 RDLKPANLLISADG----VLKIADFGLARLFSEEEPRLYSHQVATRWYRAPELLYGARK----YDPGVDLWAVGCIFAEL  194 (286)
T ss_pred             CCcCHHHEEEcCCC----cEEEeeeeecccccCCCCCccccccCcccccCceeeecccc----CCchhHHHHHHHHHHHH
Confidence            99999999998766    69999999988765432      234556777775532111    12246788888888888


Q ss_pred             ccCC
Q 024842          259 MFGR  262 (262)
Q Consensus       259 ~~G~  262 (262)
                      ++|+
T Consensus       195 ~tg~  198 (286)
T cd07832         195 LNGS  198 (286)
T ss_pred             HcCC
Confidence            7773

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea

>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

Probab=99.96  E-value=1.5e-29  Score=206.28  Aligned_cols=200  Identities=18%  Similarity=0.237  Sum_probs=148.9

Q ss_pred             ecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhC
Q 024842           23 INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLF  102 (262)
Q Consensus        23 ~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l  102 (262)
                      ++..+|++.++||+|+||.||++.......                 ...+..+++|..........+.+.+|+++++.+
T Consensus         2 ~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~-----------------~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l   64 (280)
T cd05092           2 IKRRDIVLKWELGEGAFGKVFLAECHNLLP-----------------EQDKMLVAVKALKEASESARQDFQREAELLTVL   64 (280)
T ss_pred             CChHhceeccccCCccCCeEEEeEEecCCC-----------------CCCceEEEEEecCcCCHHHHHHHHHHHHHHhcC
Confidence            356789999999999999999997643211                 112346788887766666677899999999999


Q ss_pred             CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhh-----------cCCCCCHHHHHHHHHHHHHH
Q 024842          103 SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQT-----------KKEFFSTSDVLQIFYQICAG  171 (262)
Q Consensus       103 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~-----------~~~~~~~~~~~~i~~ql~~~  171 (262)
                      +|+||+++++.+          ...+..+++||++.+++|.+++.....           ....+++..++.++.|++.|
T Consensus        65 ~h~~i~~~~~~~----------~~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~a  134 (280)
T cd05092          65 QHQHIVRFYGVC----------TEGRPLLMVFEYMRHGDLNRFLRSHGPDAKILAGGEDVAPGQLTLGQMLAIASQIASG  134 (280)
T ss_pred             CCCCCceEEEEE----------ecCCceEEEEecCCCCCHHHHHHhcCcchhhhcccccCCccccCHHHHHHHHHHHHHH
Confidence            999999999876          335668999999999999998864321           01347899999999999999


Q ss_pred             HHHHHcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-------ccCcccCCcccchhhhhhhhhhhhh
Q 024842          172 LKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-------ALGQRRYSCRNGLLSIVLHLSELLS  244 (262)
Q Consensus       172 l~~lH~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-------~~~~~~~~~~~d~~s~g~~~~e~~~  244 (262)
                      |+|||+.+  ++|+||||+||+++.++    .++|+|||++.......       ..++..|.+||.+....     ...
T Consensus       135 l~~LH~~~--i~H~dlkp~nil~~~~~----~~kL~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-----~~~  203 (280)
T cd05092         135 MVYLASLH--FVHRDLATRNCLVGQGL----VVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRK-----FTT  203 (280)
T ss_pred             HHHHHHCC--eecccccHhhEEEcCCC----CEEECCCCceeEcCCCceeecCCCccccccccCHHHhccCC-----cCc
Confidence            99999988  99999999999998765    69999999987553221       11234566665332211     112


Q ss_pred             cCcccchheeheeccc
Q 024842          245 CGTVRVIQILMRELMF  260 (262)
Q Consensus       245 ~~~v~~~g~~~~~l~~  260 (262)
                      ..|+||+|+++|+|++
T Consensus       204 ~~Di~slG~il~el~~  219 (280)
T cd05092         204 ESDIWSFGVVLWEIFT  219 (280)
T ss_pred             hhhHHHHHHHHHHHHc
Confidence            3566666666666665

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory

>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

Probab=99.96  E-value=1.5e-29  Score=207.92  Aligned_cols=190  Identities=19%  Similarity=0.297  Sum_probs=150.3

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCCC
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSH  104 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~h  104 (262)
                      ..+|++.+.||+|++|.||+|.+..+++                      .+++|.+........+.+.+|+.+++.+.|
T Consensus        19 ~~~y~~~~~lg~g~~~~v~~~~~~~~~~----------------------~v~ik~~~~~~~~~~~~~~~e~~~l~~~~h   76 (296)
T cd06654          19 KKKYTRFEKIGQGASGTVYTAMDVATGQ----------------------EVAIRQMNLQQQPKKELIINEILVMRENKN   76 (296)
T ss_pred             ccceeeEEEecCCCCeEEEEEEECCCCc----------------------EEEEEEEecCCcchHHHHHHHHHHHHhCCC
Confidence            4689999999999999999999765544                      678887766555556778899999999999


Q ss_pred             CCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeee
Q 024842          105 RNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAH  184 (262)
Q Consensus       105 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH  184 (262)
                      +|++++++.+.          .....+++|||+.+++|.+++.     ...+++.++..++.|++.||.|||+.+  ++|
T Consensus        77 ~~v~~~~~~~~----------~~~~~~lv~e~~~~~~L~~~~~-----~~~~~~~~~~~i~~ql~~aL~~LH~~g--i~H  139 (296)
T cd06654          77 PNIVNYLDSYL----------VGDELWVVMEYLAGGSLTDVVT-----ETCMDEGQIAAVCRECLQALEFLHSNQ--VIH  139 (296)
T ss_pred             CCEeeEEEEEE----------eCCEEEEeecccCCCCHHHHHH-----hcCCCHHHHHHHHHHHHHHHHHHHHCC--ccc
Confidence            99999998873          3567999999999999999874     234889999999999999999999998  999


Q ss_pred             cCCCCCcEEEecCCCCCCceEEeeccceeeccccC-----ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecc
Q 024842          185 NDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELM  259 (262)
Q Consensus       185 ~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~  259 (262)
                      +||||+||+++.++    .++|+|||++.......     ..++..|.+||....-.     .....|+|++|+++|+|+
T Consensus       140 ~dLkp~Nill~~~~----~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-----~~~~~Dv~s~Gvil~~l~  210 (296)
T cd06654         140 RDIKSDNILLGMDG----SVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKA-----YGPKVDIWSLGIMAIEMI  210 (296)
T ss_pred             CCCCHHHEEEcCCC----CEEECccccchhccccccccCcccCCccccCHHHHcCCC-----CCccchHHHHHHHHHHHH
Confidence            99999999998766    69999999987643321     24555666666442211     112467777777777777


Q ss_pred             cCC
Q 024842          260 FGR  262 (262)
Q Consensus       260 ~G~  262 (262)
                      +|+
T Consensus       211 ~g~  213 (296)
T cd06654         211 EGE  213 (296)
T ss_pred             hCC
Confidence            764

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.96  E-value=3.7e-30  Score=202.56  Aligned_cols=193  Identities=22%  Similarity=0.262  Sum_probs=158.8

Q ss_pred             ecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc---chHHHHHHHHHHHHh
Q 024842           23 INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ---NNEQLEMVREEIRVS   99 (262)
Q Consensus        23 ~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~---~~~~~~~~~~E~~~l   99 (262)
                      +.-++|..++.||+|.||.|.+++...+++                      .||+|+++..   .+....+...|-++|
T Consensus       165 vTm~dFdfLKvLGkGTFGKVIL~rEKat~k----------------------~YAiKIlkKeviiakdEVAHTlTE~RVL  222 (516)
T KOG0690|consen  165 VTMEDFDFLKVLGKGTFGKVILCREKATGK----------------------LYAIKILKKEVIIAKDEVAHTLTENRVL  222 (516)
T ss_pred             eccchhhHHHHhcCCccceEEEEeecccCc----------------------eeehhhhhhhheeehHHhhhhhhHHHHH
Confidence            335689999999999999999999988766                      6777766543   444556677899999


Q ss_pred             hhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCC
Q 024842          100 SLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLE  179 (262)
Q Consensus       100 ~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~  179 (262)
                      +..+||.+..+--.|          +..+++++||||..||.|.-.+.    +...++++....+...|++||.|||+++
T Consensus       223 ~~~~HPFLt~LKYsF----------Qt~drlCFVMeyanGGeLf~HLs----rer~FsE~RtRFYGaEIvsAL~YLHs~~  288 (516)
T KOG0690|consen  223 QNCRHPFLTSLKYSF----------QTQDRLCFVMEYANGGELFFHLS----RERVFSEDRTRFYGAEIVSALGYLHSRN  288 (516)
T ss_pred             HhccCcHHHHhhhhh----------ccCceEEEEEEEccCceEeeehh----hhhcccchhhhhhhHHHHHHhhhhhhCC
Confidence            999999998887666          66899999999999999987776    4556999999999999999999999999


Q ss_pred             CCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccc-----cCccCcccCCcccchhhhhhhhhhhhhcCcccchhee
Q 024842          180 PPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQS-----KFALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQIL  254 (262)
Q Consensus       180 ~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~-----~~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~  254 (262)
                        |++||||.+|+|++.++    .+||+|||+|+.--.     ..-.|++.|.+|+-+-..     ++-..-|.|-+|++
T Consensus       289 --ivYRDlKLENLlLDkDG----HIKitDFGLCKE~I~~g~t~kTFCGTPEYLAPEVleDn-----DYgraVDWWG~GVV  357 (516)
T KOG0690|consen  289 --IVYRDLKLENLLLDKDG----HIKITDFGLCKEEIKYGDTTKTFCGTPEYLAPEVLEDN-----DYGRAVDWWGVGVV  357 (516)
T ss_pred             --eeeeechhhhheeccCC----ceEeeecccchhcccccceeccccCChhhcCchhhccc-----cccceeehhhhhHH
Confidence              99999999999999998    799999999986322     234688888888765332     22223578889999


Q ss_pred             heecccCC
Q 024842          255 MRELMFGR  262 (262)
Q Consensus       255 ~~~l~~G~  262 (262)
                      ||||+|||
T Consensus       358 MYEMmCGR  365 (516)
T KOG0690|consen  358 MYEMMCGR  365 (516)
T ss_pred             HHHHHhcc
Confidence            99999987

>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

Probab=99.96  E-value=2.7e-29  Score=202.23  Aligned_cols=189  Identities=23%  Similarity=0.278  Sum_probs=142.6

Q ss_pred             cCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCC
Q 024842           24 NENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFS  103 (262)
Q Consensus        24 ~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~  103 (262)
                      +.++|++.+.||+|++|.||++.+...                       ..+++|.+..... ..+.+.+|+.+++.++
T Consensus         2 ~~~~~~~~~~lg~G~~~~vy~~~~~~~-----------------------~~~aik~~~~~~~-~~~~~~~e~~~l~~l~   57 (256)
T cd05113           2 DPKDLTFLKELGTGQFGVVKYGKWRGQ-----------------------YDVAIKMIKEGSM-SEDEFIEEAKVMMKLS   57 (256)
T ss_pred             ChHHeEEeeEecCcccceEEEEEecCC-----------------------CcEEEEEcCCCcc-cHHHHHHHHHHHhcCC
Confidence            456899999999999999999986532                       2477887654332 2356888999999999


Q ss_pred             CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCee
Q 024842          104 HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYA  183 (262)
Q Consensus       104 h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~iv  183 (262)
                      ||||+++++++          ......+++|||+.+++|.+++..   ....+++..++.++.|++.||.|||+.+  ++
T Consensus        58 h~~i~~~~~~~----------~~~~~~~lv~e~~~~~~l~~~i~~---~~~~~~~~~~~~~~~~i~~~l~~lH~~~--i~  122 (256)
T cd05113          58 HEKLVQLYGVC----------TKQRPIYIVTEYMSNGCLLNYLRE---HGKRFQPSQLLEMCKDVCEGMAYLESKQ--FI  122 (256)
T ss_pred             CCCeeeEEEEE----------ccCCCcEEEEEcCCCCcHHHHHHh---cCCCCCHHHHHHHHHHHHHHHHHHHhCC--ee
Confidence            99999999987          334568999999999999998753   2335899999999999999999999988  99


Q ss_pred             ecCCCCCcEEEecCCCCCCceEEeeccceeeccccCc------cCcccCCcccchhhhhhhhhhhhhcCcccchheehee
Q 024842          184 HNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKFA------LGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRE  257 (262)
Q Consensus       184 H~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~~------~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~  257 (262)
                      |+||||+||+++.++    .+||+|||.+.....+..      .++..|.+||.+..-     ......|+|++|+++|+
T Consensus       123 H~dl~p~nili~~~~----~~kl~d~g~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~-----~~~~~~Di~slG~~l~~  193 (256)
T cd05113         123 HRDLAARNCLVDDQG----CVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLLYS-----KFSSKSDVWAFGVLMWE  193 (256)
T ss_pred             ccccCcceEEEcCCC----CEEECCCccceecCCCceeecCCCccChhhCCHHHHhcC-----cccchhHHHHHHHHHHH
Confidence            999999999998766    699999999876543221      122345555543211     11123567777777777


Q ss_pred             ccc
Q 024842          258 LMF  260 (262)
Q Consensus       258 l~~  260 (262)
                      |++
T Consensus       194 l~~  196 (256)
T cd05113         194 VYS  196 (256)
T ss_pred             Hhc
Confidence            665

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds

>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

Probab=99.96  E-value=2.3e-29  Score=207.51  Aligned_cols=163  Identities=22%  Similarity=0.311  Sum_probs=131.5

Q ss_pred             CceeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc-chHHHHHHHHHHH
Q 024842           19 GDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ-NNEQLEMVREEIR   97 (262)
Q Consensus        19 ~~~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~-~~~~~~~~~~E~~   97 (262)
                      ....+..++|.+.+.||+|+||.||++.+......                 .....+++|.+... .....+.+.+|+.
T Consensus        28 ~~~~~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~-----------------~~~~~vavK~~~~~~~~~~~~~~~~E~~   90 (302)
T cd05055          28 LKWEFPRNNLSFGKTLGAGAFGKVVEATAYGLSKS-----------------DAVMKVAVKMLKPTAHSSEREALMSELK   90 (302)
T ss_pred             ccccccHHHeEEcceeeccCCeeEEEEEEecCCCC-----------------CceeEEEEEecCccCChHHHHHHHHHHH
Confidence            34567778999999999999999999986432211                 12336788876644 2344567889999


Q ss_pred             HhhhC-CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHH
Q 024842           98 VSSLF-SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMH  176 (262)
Q Consensus        98 ~l~~l-~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH  176 (262)
                      +++.+ +||||+++++.+.          ..+..+++|||+.+++|.+++...  ....+++.+++.++.|++.||.|||
T Consensus        91 ~l~~l~~h~~iv~~~~~~~----------~~~~~~lv~e~~~~~~L~~~i~~~--~~~~l~~~~~~~i~~~i~~~l~~lH  158 (302)
T cd05055          91 IMSHLGNHENIVNLLGACT----------IGGPILVITEYCCYGDLLNFLRRK--RESFLTLEDLLSFSYQVAKGMAFLA  158 (302)
T ss_pred             HHHhccCCCCcceEEEEEe----------cCCceEEEEEcCCCCcHHHHHHhC--CCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            99999 7999999998873          356789999999999999987521  2234899999999999999999999


Q ss_pred             cCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeecc
Q 024842          177 SLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQ  216 (262)
Q Consensus       177 ~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~  216 (262)
                      +++  ++|+||||+||+++.++    .++|+|||++....
T Consensus       159 ~~~--ivH~dlkp~Nil~~~~~----~~~l~dfg~~~~~~  192 (302)
T cd05055         159 SKN--CIHRDLAARNVLLTHGK----IVKICDFGLARDIM  192 (302)
T ss_pred             HCC--eehhhhccceEEEcCCC----eEEECCCccccccc
Confidence            988  99999999999997665    69999999988653

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept

>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

Probab=99.96  E-value=6e-29  Score=203.62  Aligned_cols=200  Identities=19%  Similarity=0.260  Sum_probs=150.2

Q ss_pred             ecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhC
Q 024842           23 INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLF  102 (262)
Q Consensus        23 ~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l  102 (262)
                      ++.++|.+.+.||+|+||.||++.+......                 .....+++|.+........+.+.+|+.+++.+
T Consensus         2 ~~~~~~~~~~~lg~G~~~~v~~~~~~~~~~~-----------------~~~~~~~ik~~~~~~~~~~~~~~~e~~~l~~l   64 (288)
T cd05093           2 IKRHNIVLKRELGEGAFGKVFLAECYNLCPE-----------------QDKILVAVKTLKDASDNARKDFHREAELLTNL   64 (288)
T ss_pred             CchHHeeeccccCCcCCeeEEeeEeccCCCC-----------------CcceEEEEEecCCcCHHHHHHHHHHHHHHHhC
Confidence            4678999999999999999999986432110                 12335788887766666667889999999999


Q ss_pred             CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhh---------hcCCCCCHHHHHHHHHHHHHHHH
Q 024842          103 SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQ---------TKKEFFSTSDVLQIFYQICAGLK  173 (262)
Q Consensus       103 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~---------~~~~~~~~~~~~~i~~ql~~~l~  173 (262)
                      +|||++++++.+.          .....+++|||+.+++|.+++....         .....+++..++.++.|++.||+
T Consensus        65 ~h~~i~~~~~~~~----------~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~  134 (288)
T cd05093          65 QHEHIVKFYGVCV----------EGDPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNRPAELTQSQMLHIAQQIAAGMV  134 (288)
T ss_pred             CCCCcceEEEEEe----------cCCccEEEEEcCCCCCHHHHHHHcCCccccccccCCCCCCCHHHHHHHHHHHHHHHH
Confidence            9999999998873          3567899999999999999886322         12234899999999999999999


Q ss_pred             HHHcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-------ccCcccCCcccchhhhhhhhhhhhhcC
Q 024842          174 HMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-------ALGQRRYSCRNGLLSIVLHLSELLSCG  246 (262)
Q Consensus       174 ~lH~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-------~~~~~~~~~~~d~~s~g~~~~e~~~~~  246 (262)
                      |||+.+  ++||||||+||+++.++    .++|+|||++.......       ..++..|.+||.+....     .....
T Consensus       135 ~lH~~~--i~H~dlkp~Nili~~~~----~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-----~~~~s  203 (288)
T cd05093         135 YLASQH--FVHRDLATRNCLVGENL----LVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRK-----FTTES  203 (288)
T ss_pred             HHHhCC--eeecccCcceEEEccCC----cEEeccCCccccccCCceeecCCCCCccccccCHHHhccCC-----CCchh
Confidence            999988  99999999999998766    69999999987543221       12234566665432211     11235


Q ss_pred             cccchheeheeccc
Q 024842          247 TVRVIQILMRELMF  260 (262)
Q Consensus       247 ~v~~~g~~~~~l~~  260 (262)
                      |+||+|+++++|++
T Consensus       204 DiwslG~il~~l~t  217 (288)
T cd05093         204 DVWSLGVVLWEIFT  217 (288)
T ss_pred             hHHHHHHHHHHHHh
Confidence            67777777776665

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly

>PHA03211 serine/threonine kinase US3; Provisional

Probab=99.96  E-value=1.4e-29  Score=218.30  Aligned_cols=184  Identities=18%  Similarity=0.177  Sum_probs=141.3

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCCC
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSH  104 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~h  104 (262)
                      +..|.+.+.||+|+||.||+|.+..+++                      .|++|....      ..+.+|+.+++.++|
T Consensus       168 ~~gy~i~~~Lg~G~~G~Vy~a~~~~~~~----------------------~vavK~~~~------~~~~~E~~iL~~L~H  219 (461)
T PHA03211        168 GLGFAIHRALTPGSEGCVFESSHPDYPQ----------------------RVVVKAGWY------ASSVHEARLLRRLSH  219 (461)
T ss_pred             cCCeEEEEEEccCCCeEEEEEEECCCCC----------------------EEEEecccc------cCHHHHHHHHHHCCC
Confidence            5689999999999999999999887655                      566664321      234679999999999


Q ss_pred             CCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeee
Q 024842          105 RNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAH  184 (262)
Q Consensus       105 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH  184 (262)
                      +||+++++.+.          ..+..+++|+++. ++|.+++..   ....+++..++.++.|++.||.|||+.+  |+|
T Consensus       220 pnIv~l~~~~~----------~~~~~~lv~e~~~-~~L~~~l~~---~~~~l~~~~~~~i~~qi~~aL~yLH~~g--IvH  283 (461)
T PHA03211        220 PAVLALLDVRV----------VGGLTCLVLPKYR-SDLYTYLGA---RLRPLGLAQVTAVARQLLSAIDYIHGEG--IIH  283 (461)
T ss_pred             CCCCcEEEEEE----------ECCEEEEEEEccC-CCHHHHHHh---cCCCCCHHHHHHHHHHHHHHHHHHHHCC--EEE
Confidence            99999998763          3567889999874 677776642   3346999999999999999999999998  999


Q ss_pred             cCCCCCcEEEecCCCCCCceEEeeccceeeccccC-------ccCcccCCcccchhhhhhhhhhhhhcCcccchheehee
Q 024842          185 NDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-------ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRE  257 (262)
Q Consensus       185 ~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-------~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~  257 (262)
                      |||||+|||++.++    .++|+|||++.......       ..++..|.+||.+....     .....||||+|+++||
T Consensus       284 rDLKP~NILl~~~~----~vkL~DFGla~~~~~~~~~~~~~~~~GT~~Y~APE~~~~~~-----~~~~sDvwSlGviL~E  354 (461)
T PHA03211        284 RDIKTENVLVNGPE----DICLGDFGAACFARGSWSTPFHYGIAGTVDTNAPEVLAGDP-----YTPSVDIWSAGLVIFE  354 (461)
T ss_pred             CcCCHHHEEECCCC----CEEEcccCCceecccccccccccccCCCcCCcCHHHHcCCC-----CCchHHHHHHHHHHHH
Confidence            99999999998766    69999999997653221       24677777777543321     1123577777777777


Q ss_pred             cccC
Q 024842          258 LMFG  261 (262)
Q Consensus       258 l~~G  261 (262)
                      |++|
T Consensus       355 l~~g  358 (461)
T PHA03211        355 AAVH  358 (461)
T ss_pred             HHHc
Confidence            6554

>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]

Probab=99.96  E-value=1.4e-29  Score=210.39  Aligned_cols=190  Identities=21%  Similarity=0.247  Sum_probs=154.7

Q ss_pred             EEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCCCCCccch
Q 024842           31 LRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSHRNLLPL  110 (262)
Q Consensus        31 ~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~  110 (262)
                      .+.||.|.||+||-|.++.+++.+|+|                   +|-+.....++. .++.+|+.+|+.+.||.|+.+
T Consensus       569 devLGSGQFG~VYgg~hRktGrdVAvK-------------------vIdKlrFp~kqe-sqlR~EVaILq~l~HPGiV~l  628 (888)
T KOG4236|consen  569 DEVLGSGQFGTVYGGKHRKTGRDVAVK-------------------VIDKLRFPTKQE-SQLRNEVAILQNLHHPGIVNL  628 (888)
T ss_pred             HhhccCCcceeeecceecccCceeeee-------------------eeecccCCCchH-HHHHHHHHHHHhcCCCCeeEE
Confidence            467999999999999999988855443                   122222233332 678899999999999999999


Q ss_pred             hhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeeecCCCCC
Q 024842          111 LDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPG  190 (262)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~dikp~  190 (262)
                      .-.|          ++.++.+++||-+.+ ++...+-.  +..+++++...+.+..||+.||.|||.++  |+|+||||+
T Consensus       629 e~M~----------ET~ervFVVMEKl~G-DMLEMILS--sEkgRL~er~TkFlvtQIL~ALr~LH~kn--IvHCDLKPE  693 (888)
T KOG4236|consen  629 ECMF----------ETPERVFVVMEKLHG-DMLEMILS--SEKGRLPERITKFLVTQILVALRYLHFKN--IVHCDLKPE  693 (888)
T ss_pred             EEee----------cCCceEEEEehhhcc-hHHHHHHH--hhcccchHHHHHHHHHHHHHHHHHhhhcc--eeeccCCch
Confidence            8887          668899999996654 55444432  23466999999999999999999999999  999999999


Q ss_pred             cEEEecCCCCCCceEEeeccceeeccccC----ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecccC
Q 024842          191 NILITCRKGQPPLAILMDFGSARPAQSKF----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMFG  261 (262)
Q Consensus       191 Nill~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~G  261 (262)
                      |||+.+. ...|.+||+|||+|+.+....    ..|++.|.+||-+..-|+...     =|+||.|+++|..++|
T Consensus       694 NVLLas~-~~FPQvKlCDFGfARiIgEksFRrsVVGTPAYLaPEVLrnkGyNrS-----LDMWSVGVIiYVsLSG  762 (888)
T KOG4236|consen  694 NVLLASA-SPFPQVKLCDFGFARIIGEKSFRRSVVGTPAYLAPEVLRNKGYNRS-----LDMWSVGVIIYVSLSG  762 (888)
T ss_pred             heeeccC-CCCCceeeccccceeecchhhhhhhhcCCccccCHHHHhhcccccc-----ccceeeeEEEEEEecc
Confidence            9999877 467799999999999987654    579999999999888887754     3899999999998887

>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

Probab=99.96  E-value=1.5e-29  Score=206.56  Aligned_cols=190  Identities=23%  Similarity=0.269  Sum_probs=144.0

Q ss_pred             ceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc--hHHHHHHHHHHHHhhhCCC
Q 024842           27 RYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN--NEQLEMVREEIRVSSLFSH  104 (262)
Q Consensus        27 ~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~--~~~~~~~~~E~~~l~~l~h  104 (262)
                      +|++.+.||+|++|.||+|++..+++                      .+++|++....  ......+.+|+.+++.++|
T Consensus         1 ~y~~~~~l~~g~~~~vy~~~~~~~g~----------------------~~~~k~~~~~~~~~~~~~~~~~ei~~l~~l~h   58 (284)
T cd07839           1 KYEKLEKIGEGTYGTVFKAKNRETHE----------------------IVALKRVRLDDDDEGVPSSALREICLLKELKH   58 (284)
T ss_pred             CceeEEEecccCCeEEEEEEECCCCc----------------------EEEEEEeecccccccCccchhHHHHHHHhcCC
Confidence            58999999999999999999987655                      56666654331  1122456789999999999


Q ss_pred             CCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeee
Q 024842          105 RNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAH  184 (262)
Q Consensus       105 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH  184 (262)
                      ||++++++.+.          .....++++||+. ++|.+++..   ....+++..++.++.|++.||.|||+.+  ++|
T Consensus        59 ~~i~~~~~~~~----------~~~~~~lv~e~~~-~~l~~~~~~---~~~~~~~~~~~~~~~qi~~al~~LH~~~--i~H  122 (284)
T cd07839          59 KNIVRLYDVLH----------SDKKLTLVFEYCD-QDLKKYFDS---CNGDIDPEIVKSFMFQLLKGLAFCHSHN--VLH  122 (284)
T ss_pred             CCeeeHHHHhc----------cCCceEEEEecCC-CCHHHHHHh---cCCCCCHHHHHHHHHHHHHHHHHHHHCC--Eec
Confidence            99999999883          3567899999886 577766542   3456899999999999999999999998  999


Q ss_pred             cCCCCCcEEEecCCCCCCceEEeeccceeeccccC-----ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecc
Q 024842          185 NDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELM  259 (262)
Q Consensus       185 ~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~  259 (262)
                      +||||+||+++.++    .++|+|||++.......     ..++..|.+||.+..-..    .....|+|++|+++++|+
T Consensus       123 ~dl~~~nil~~~~~----~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~----~~~~~DiwslG~il~~l~  194 (284)
T cd07839         123 RDLKPQNLLINKNG----ELKLADFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKL----YSTSIDMWSAGCIFAELA  194 (284)
T ss_pred             CCCCHHHEEEcCCC----cEEECccchhhccCCCCCCcCCCccccCCcChHHHhCCcc----cCcHHHHHHHHHHHHHHH
Confidence            99999999998776    69999999988654321     234456677765422110    112367888888888887


Q ss_pred             cCC
Q 024842          260 FGR  262 (262)
Q Consensus       260 ~G~  262 (262)
                      +|+
T Consensus       195 tg~  197 (284)
T cd07839         195 NAG  197 (284)
T ss_pred             hcC
Confidence            763

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also

>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2

Probab=99.96  E-value=4.6e-29  Score=205.79  Aligned_cols=198  Identities=20%  Similarity=0.260  Sum_probs=145.7

Q ss_pred             eecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc-chHHHHHHHHHHHHhh
Q 024842           22 WINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ-NNEQLEMVREEIRVSS  100 (262)
Q Consensus        22 ~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~-~~~~~~~~~~E~~~l~  100 (262)
                      ++..++|++.+.||+|+||.||+|.+..++..                    ..+++|..... .......+.+|+.++.
T Consensus         3 ~~~~~~~~~~~~lg~G~~g~V~~a~~~~~~~~--------------------~~~~ik~~~~~~~~~~~~~~~~Ei~~l~   62 (303)
T cd05088           3 VLEWNDIKFQDVIGEGNFGQVLKARIKKDGLR--------------------MDAAIKRMKEYASKDDHRDFAGELEVLC   62 (303)
T ss_pred             ccchhhceeeeeecCCCCceEEEEEEccCCce--------------------eeEEEEEecccCCHHHHHHHHHHHHHHH
Confidence            46678999999999999999999998765432                    13455554432 2334567888999999


Q ss_pred             hC-CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhh------------cCCCCCHHHHHHHHHH
Q 024842          101 LF-SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQT------------KKEFFSTSDVLQIFYQ  167 (262)
Q Consensus       101 ~l-~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~------------~~~~~~~~~~~~i~~q  167 (262)
                      .+ +|+||+++++.+          ...+..|++|||+.+++|.+++.....            ....+++..++.++.|
T Consensus        63 ~l~~h~~iv~~~~~~----------~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~q  132 (303)
T cd05088          63 KLGHHPNIINLLGAC----------EHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAAD  132 (303)
T ss_pred             HhcCCCCcceEEEEE----------CCCCCceEEEEeCCCCcHHHHHHhcccccccccccccccccCcCCHHHHHHHHHH
Confidence            99 899999999987          345679999999999999998864321            1235789999999999


Q ss_pred             HHHHHHHHHcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC----ccCcccCCcccchhhhhhhhhhhh
Q 024842          168 ICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF----ALGQRRYSCRNGLLSIVLHLSELL  243 (262)
Q Consensus       168 l~~~l~~lH~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~~~~~~~~d~~s~g~~~~e~~  243 (262)
                      ++.||+|||+++  ++||||||+|||++.++    .++|+|||++.......    ...+..|.+||.+....     ..
T Consensus       133 i~~al~~LH~~g--i~H~dlkp~Nili~~~~----~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-----~~  201 (303)
T cd05088         133 VARGMDYLSQKQ--FIHRDLAARNILVGENY----VAKIADFGLSRGQEVYVKKTMGRLPVRWMAIESLNYSV-----YT  201 (303)
T ss_pred             HHHHHHHHHhCC--ccccccchheEEecCCC----cEEeCccccCcccchhhhcccCCCcccccCHHHHhccC-----Cc
Confidence            999999999998  99999999999998766    69999999986432110    11223455555332111     11


Q ss_pred             hcCcccchheeheeccc
Q 024842          244 SCGTVRVIQILMRELMF  260 (262)
Q Consensus       244 ~~~~v~~~g~~~~~l~~  260 (262)
                      ...|+||+|+++++|++
T Consensus       202 ~~~Di~slG~il~ellt  218 (303)
T cd05088         202 TNSDVWSYGVLLWEIVS  218 (303)
T ss_pred             ccccchhhhhHHHHHHh
Confidence            24677777777777665

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A

>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

Probab=99.96  E-value=1.6e-29  Score=207.23  Aligned_cols=196  Identities=17%  Similarity=0.243  Sum_probs=144.5

Q ss_pred             ceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc-hHHHHHHHHHHHHhhhCCCC
Q 024842           27 RYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN-NEQLEMVREEIRVSSLFSHR  105 (262)
Q Consensus        27 ~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~-~~~~~~~~~E~~~l~~l~h~  105 (262)
                      +|++.+.||+|+||.||+|.+......                 .....+++|...... ....+.+.+|+.+++.++||
T Consensus         1 ~~~~~~~lg~g~~g~vy~~~~~~~~~~-----------------~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~   63 (290)
T cd05045           1 NLVLGKTLGEGEFGKVVKATAFRLKGR-----------------AGYTTVAVKMLKENASSSELRDLLSEFNLLKQVNHP   63 (290)
T ss_pred             CccccccccCcCCcceEEEEEecCCCC-----------------CcceeEEEEecCCCCCHHHHHHHHHHHHHHhhCCCC
Confidence            478899999999999999987543221                 112357777665443 33456788999999999999


Q ss_pred             CccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhh--------------------cCCCCCHHHHHHHH
Q 024842          106 NLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQT--------------------KKEFFSTSDVLQIF  165 (262)
Q Consensus       106 ~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~--------------------~~~~~~~~~~~~i~  165 (262)
                      ||+++++.+          ...+..++++||+.+++|.+++.....                    ....+++..++.++
T Consensus        64 ~iv~~~~~~----------~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~  133 (290)
T cd05045          64 HVIKLYGAC----------SQDGPLLLIVEYAKYGSLRSFLRESRKVGPSYLGSDGNRNSSYLDNPDERALTMGDLISFA  133 (290)
T ss_pred             CEeeEEEEE----------ecCCCcEEEEEecCCCCHHHHHHhcCCccccccccccccccccccCccccccCHHHHHHHH
Confidence            999999876          335678999999999999998764211                    12347899999999


Q ss_pred             HHHHHHHHHHHcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-------ccCcccCCcccchhhhhhh
Q 024842          166 YQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-------ALGQRRYSCRNGLLSIVLH  238 (262)
Q Consensus       166 ~ql~~~l~~lH~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-------~~~~~~~~~~~d~~s~g~~  238 (262)
                      .|++.||.|||+.+  ++||||||+||+++.++    .++|+|||++.......       ...+..|.+||.+..-.  
T Consensus       134 ~~i~~~l~~LH~~~--ivH~dikp~nill~~~~----~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~--  205 (290)
T cd05045         134 WQISRGMQYLAEMK--LVHRDLAARNVLVAEGR----KMKISDFGLSRDVYEEDSYVKRSKGRIPVKWMAIESLFDHI--  205 (290)
T ss_pred             HHHHHHHHHHHHCC--eehhhhhhheEEEcCCC----cEEeccccccccccCccchhcccCCCCCccccCHHHHccCC--
Confidence            99999999999988  99999999999998766    69999999987543221       12234566665432211  


Q ss_pred             hhhhhhcCcccchheeheeccc
Q 024842          239 LSELLSCGTVRVIQILMRELMF  260 (262)
Q Consensus       239 ~~e~~~~~~v~~~g~~~~~l~~  260 (262)
                         .....|+||+|+++++|++
T Consensus       206 ---~~~~~Di~slG~~l~el~t  224 (290)
T cd05045         206 ---YTTQSDVWSFGVLLWEIVT  224 (290)
T ss_pred             ---cchHhHHHHHHHHHHHHHh
Confidence               1223577777777777765

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi

>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

Probab=99.96  E-value=1.5e-29  Score=206.75  Aligned_cols=192  Identities=24%  Similarity=0.333  Sum_probs=145.1

Q ss_pred             ceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc--chHHHHHHHHHHHHhhhCCC
Q 024842           27 RYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ--NNEQLEMVREEIRVSSLFSH  104 (262)
Q Consensus        27 ~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~--~~~~~~~~~~E~~~l~~l~h  104 (262)
                      +|++.+.||.|++|.||+|++..+++                      .+++|++...  .......+.+|+.+++.++|
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~----------------------~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h   58 (285)
T cd07861           1 DYTKIEKIGEGTYGVVYKGRNKKTGQ----------------------IVAMKKIRLESEEEGVPSTAIREISLLKELQH   58 (285)
T ss_pred             CceEeeEecccCceEEEEEEECCCCc----------------------EEEEEEeccccccCCchHHHHHHHHHHHhcCC
Confidence            58999999999999999999876655                      5677765433  22234567789999999999


Q ss_pred             CCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeee
Q 024842          105 RNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAH  184 (262)
Q Consensus       105 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH  184 (262)
                      ||++++++.+.          .....+++|||+. ++|.+++.... ....+++..++.++.|++.||.|||+.+  ++|
T Consensus        59 ~~i~~~~~~~~----------~~~~~~~v~e~~~-~~l~~~~~~~~-~~~~~~~~~~~~~~~qi~~~L~~lH~~~--i~H  124 (285)
T cd07861          59 PNIVCLQDVLM----------QESRLYLIFEFLS-MDLKKYLDSLP-KGQYMDAELVKSYLYQILQGILFCHSRR--VLH  124 (285)
T ss_pred             CCEeeeEEEEe----------eCCeEEEEEecCC-CCHHHHHhcCC-CCCcCCHHHHHHHHHHHHHHHHHHHhCC--eee
Confidence            99999999873          3567899999987 67877765322 2356899999999999999999999998  999


Q ss_pred             cCCCCCcEEEecCCCCCCceEEeeccceeeccccC-----ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecc
Q 024842          185 NDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELM  259 (262)
Q Consensus       185 ~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~  259 (262)
                      +||+|+||+++.++    .++|+|||++.....+.     ..++..|.+||.+-.-.    ......|+|++|+++++|+
T Consensus       125 ~dl~p~nil~~~~~----~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~----~~~~~~Dv~slG~il~~l~  196 (285)
T cd07861         125 RDLKPQNLLIDNKG----VIKLADFGLARAFGIPVRVYTHEVVTLWYRAPEVLLGSP----RYSTPVDIWSIGTIFAEMA  196 (285)
T ss_pred             cCCCHHHEEEcCCC----cEEECcccceeecCCCcccccCCcccccccChHHhcCCC----CcCcHHHHHHHHHHHHHHH
Confidence            99999999998776    69999999987654321     12345566666432111    0112357788888888877


Q ss_pred             cCC
Q 024842          260 FGR  262 (262)
Q Consensus       260 ~G~  262 (262)
                      +|+
T Consensus       197 tg~  199 (285)
T cd07861         197 TKK  199 (285)
T ss_pred             HCC
Confidence            774

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2

>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]

Probab=99.96  E-value=2.8e-30  Score=216.09  Aligned_cols=178  Identities=20%  Similarity=0.249  Sum_probs=140.9

Q ss_pred             eEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCCCCCc
Q 024842           28 YRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSHRNL  107 (262)
Q Consensus        28 y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~h~~i  107 (262)
                      ..-++-||.|+.|.||+|+...                        +.||||++...+       +.+|..|++|+||||
T Consensus       126 IsELeWlGSGaQGAVF~Grl~n------------------------etVAVKKV~elk-------ETdIKHLRkLkH~NI  174 (904)
T KOG4721|consen  126 ISELEWLGSGAQGAVFLGRLHN------------------------ETVAVKKVRELK-------ETDIKHLRKLKHPNI  174 (904)
T ss_pred             hhhhhhhccCcccceeeeeccC------------------------ceehhHHHhhhh-------hhhHHHHHhccCcce
Confidence            3345668999999999999753                        478999886433       356888999999999


Q ss_pred             cchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeeecCC
Q 024842          108 LPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDV  187 (262)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~di  187 (262)
                      +.+.+++          .....++++||||..|-|+..++    .+..++......+..+|+.|+.|||.+.  ||||||
T Consensus       175 I~FkGVC----------tqsPcyCIiMEfCa~GqL~~VLk----a~~~itp~llv~Wsk~IA~GM~YLH~hK--IIHRDL  238 (904)
T KOG4721|consen  175 ITFKGVC----------TQSPCYCIIMEFCAQGQLYEVLK----AGRPITPSLLVDWSKGIAGGMNYLHLHK--IIHRDL  238 (904)
T ss_pred             eeEeeee----------cCCceeEEeeeccccccHHHHHh----ccCccCHHHHHHHHHHhhhhhHHHHHhh--Hhhhcc
Confidence            9999998          44667889999999999999997    6677999999999999999999999988  999999


Q ss_pred             CCCcEEEecCCCCCCceEEeeccceeeccccC----ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecccC
Q 024842          188 KPGNILITCRKGQPPLAILMDFGSARPAQSKF----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMFG  261 (262)
Q Consensus       188 kp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~G  261 (262)
                      |.-||||+.++    .+||+|||.++......    ..|+..|++||-+....|.     .+-||||||+++|||+||
T Consensus       239 KSPNiLIs~~d----~VKIsDFGTS~e~~~~STkMSFaGTVaWMAPEvIrnePcs-----EKVDIwSfGVVLWEmLT~  307 (904)
T KOG4721|consen  239 KSPNILISYDD----VVKISDFGTSKELSDKSTKMSFAGTVAWMAPEVIRNEPCS-----EKVDIWSFGVVLWEMLTG  307 (904)
T ss_pred             CCCceEeeccc----eEEeccccchHhhhhhhhhhhhhhhHhhhCHHHhhcCCcc-----cccceehhHHHHHHHHhc
Confidence            99999999887    79999999998765443    2467777777644333322     123555555555555554

>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

Probab=99.96  E-value=2e-29  Score=207.35  Aligned_cols=190  Identities=19%  Similarity=0.293  Sum_probs=147.0

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCCC
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSH  104 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~h  104 (262)
                      ..+|.+.+.||+|++|.||++.+..+++                      .+++|.+........+.+.+|+.+++.++|
T Consensus        18 ~~~y~~~~~lg~g~~g~v~~~~~~~~~~----------------------~vaiK~~~~~~~~~~~~~~~e~~~l~~~~h   75 (297)
T cd06656          18 KKKYTRFEKIGQGASGTVYTAIDIATGQ----------------------EVAIKQMNLQQQPKKELIINEILVMRENKN   75 (297)
T ss_pred             hhhceeeeeeccCCCeEEEEEEECCCCC----------------------EEEEEEEecCccchHHHHHHHHHHHHhCCC
Confidence            3689999999999999999999876544                      678887765555555678889999999999


Q ss_pred             CCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeee
Q 024842          105 RNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAH  184 (262)
Q Consensus       105 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH  184 (262)
                      +|++++++.+.          .....+++|||+.+++|.+++.     ...+++..+..++.|++.||.|||+.+  ++|
T Consensus        76 ~~i~~~~~~~~----------~~~~~~lv~e~~~~~~L~~~~~-----~~~~~~~~~~~~~~~l~~~L~~LH~~~--i~H  138 (297)
T cd06656          76 PNIVNYLDSYL----------VGDELWVVMEYLAGGSLTDVVT-----ETCMDEGQIAAVCRECLQALDFLHSNQ--VIH  138 (297)
T ss_pred             CCEeeEEEEEe----------cCCEEEEeecccCCCCHHHHHH-----hCCCCHHHHHHHHHHHHHHHHHHHHCC--ccc
Confidence            99999999873          3567899999999999999874     234889999999999999999999988  999


Q ss_pred             cCCCCCcEEEecCCCCCCceEEeeccceeeccccC-----ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecc
Q 024842          185 NDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELM  259 (262)
Q Consensus       185 ~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~  259 (262)
                      +||||+||+++.++    .++|+|||++.......     ..++..|.+||.......     ....|+|++|+++|+++
T Consensus       139 ~dL~p~Nili~~~~----~~~l~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~-----~~~~Di~slGvil~~l~  209 (297)
T cd06656         139 RDIKSDNILLGMDG----SVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAY-----GPKVDIWSLGIMAIEMV  209 (297)
T ss_pred             CCCCHHHEEECCCC----CEEECcCccceEccCCccCcCcccCCccccCHHHHcCCCC-----CcHHHHHHHHHHHHHHH
Confidence            99999999998766    69999999987654332     234445555554322111     11246666666666666


Q ss_pred             cCC
Q 024842          260 FGR  262 (262)
Q Consensus       260 ~G~  262 (262)
                      +|+
T Consensus       210 tg~  212 (297)
T cd06656         210 EGE  212 (297)
T ss_pred             hCC
Confidence            653

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

Probab=99.96  E-value=2.6e-29  Score=213.91  Aligned_cols=168  Identities=21%  Similarity=0.281  Sum_probs=133.5

Q ss_pred             CCCCCceeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc-hHHHHHHH
Q 024842           15 VNGGGDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN-NEQLEMVR   93 (262)
Q Consensus        15 ~~~~~~~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~-~~~~~~~~   93 (262)
                      ........+..++|.+.+.||+|+||.||+|++......                 .....||+|++.... ....+.+.
T Consensus        26 ~~~~~~~~~~~~~~~~~~~lG~G~fG~Vy~~~~~~~~~~-----------------~~~~~vavK~l~~~~~~~~~~~~~   88 (401)
T cd05107          26 LPYDSAWEMPRDNLVLGRTLGSGAFGRVVEATAHGLSHS-----------------QSTMKVAVKMLKSTARSSEKQALM   88 (401)
T ss_pred             CCCCCcceecHHHeehhhhccCCCceeEEEEEEcCCCCC-----------------CCceEEEEEecCCCCChhHHHHHH
Confidence            334445778888999999999999999999997643211                 123468899886542 33345788


Q ss_pred             HHHHHhhhCC-CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhh---------------------
Q 024842           94 EEIRVSSLFS-HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQT---------------------  151 (262)
Q Consensus        94 ~E~~~l~~l~-h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~---------------------  151 (262)
                      .|+.++..+. ||||+++++.+.          ..+..+++|||+.+|+|.+++.....                     
T Consensus        89 ~E~~~l~~l~~H~niv~~~~~~~----------~~~~~~iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (401)
T cd05107          89 SELKIMSHLGPHLNIVNLLGACT----------KGGPIYIITEYCRYGDLVDYLHRNKHTFLQYYLDKNRDDGSLISGGS  158 (401)
T ss_pred             HHHHHHHhcCCCCCeEEEEEEEc----------cCCCcEEEEeccCCCcHHHHHHhccccchhhhccccccccccccccc
Confidence            9999999997 999999999873          35678999999999999998864211                     


Q ss_pred             -------------------------------------------------------------------------cCCCCCH
Q 024842          152 -------------------------------------------------------------------------KKEFFST  158 (262)
Q Consensus       152 -------------------------------------------------------------------------~~~~~~~  158 (262)
                                                                                               ....+++
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  238 (401)
T cd05107         159 TPLSQRKSHVSLGSESDGGYMDMSKDESADYVPMQDMKGTVKYADIESSNYESPYDQYLPSAPERTRRDTLINESPALSY  238 (401)
T ss_pred             ccccccccchhhhhccCccccccCCccccCccchhcchhhhhhhhhhccCcCCchhhhhcccCCCcchhhhhcCCCCCCH
Confidence                                                                                     1123677


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeec
Q 024842          159 SDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPA  215 (262)
Q Consensus       159 ~~~~~i~~ql~~~l~~lH~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~  215 (262)
                      ..++.++.|++.||.|||+.+  ++||||||+|||++.++    .++|+|||++...
T Consensus       239 ~~~~~~~~qi~~aL~~LH~~~--ivHrdlkp~NiLl~~~~----~~kL~DfGla~~~  289 (401)
T cd05107         239 MDLVGFSYQVANGMEFLASKN--CVHRDLAARNVLICEGK----LVKICDFGLARDI  289 (401)
T ss_pred             HHHHHHHHHHHHHHHHHhcCC--cCcccCCcceEEEeCCC----EEEEEecCcceec
Confidence            788999999999999999988  99999999999998765    6999999999764

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D

>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

Probab=99.96  E-value=1.3e-29  Score=206.07  Aligned_cols=189  Identities=20%  Similarity=0.270  Sum_probs=150.5

Q ss_pred             CceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc-hHHHHHHHHHHHHhhhCCC
Q 024842           26 NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN-NEQLEMVREEIRVSSLFSH  104 (262)
Q Consensus        26 ~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~-~~~~~~~~~E~~~l~~l~h  104 (262)
                      ++|++.+.||.|++|.||+|.+..+++                      .+++|.+.... ......+.+|+.+++.++|
T Consensus         1 ~~y~~~~~lg~g~~~~v~~~~~~~~~~----------------------~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h   58 (274)
T cd06609           1 ELFTLLECIGKGSFGEVYKAIDKRTNQ----------------------VVAIKVIDLEEAEDEIEDIQQEIQFLSQCRS   58 (274)
T ss_pred             ChhhhhhhhcCCCCeEEEEEEECCCCe----------------------EEEEEEeeccccchHHHHHHHHHHHHHHcCC
Confidence            478999999999999999999876554                      67777665443 3344678889999999999


Q ss_pred             CCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeee
Q 024842          105 RNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAH  184 (262)
Q Consensus       105 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH  184 (262)
                      +|++++++.+.          .....++++|++.+++|.+++..     .++++..++.++.|++.||.|||+.+  ++|
T Consensus        59 ~~i~~~~~~~~----------~~~~~~~v~e~~~~~~L~~~~~~-----~~~~~~~~~~~~~ql~~~l~~lh~~~--i~h  121 (274)
T cd06609          59 PYITKYYGSFL----------KGSKLWIIMEYCGGGSCLDLLKP-----GKLDETYIAFILREVLLGLEYLHEEG--KIH  121 (274)
T ss_pred             CCeeeeeEEEE----------ECCeEEEEEEeeCCCcHHHHHhh-----cCCCHHHHHHHHHHHHHHHHHHHhCC--ccc
Confidence            99999998873          34678999999999999988752     26899999999999999999999988  999


Q ss_pred             cCCCCCcEEEecCCCCCCceEEeeccceeeccccC-----ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecc
Q 024842          185 NDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELM  259 (262)
Q Consensus       185 ~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~  259 (262)
                      +||+|+||+++.++    .++|+|||++.......     ..++..|.+||......     ....+|+|++|+++|+|+
T Consensus       122 ~dl~p~ni~i~~~~----~~~l~d~g~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~-----~~~~sDv~slG~il~~l~  192 (274)
T cd06609         122 RDIKAANILLSEEG----DVKLADFGVSGQLTSTMSKRNTFVGTPFWMAPEVIKQSG-----YDEKADIWSLGITAIELA  192 (274)
T ss_pred             CCCCHHHEEECCCC----CEEEcccccceeecccccccccccCCccccChhhhccCC-----CCchhhHHHHHHHHHHHH
Confidence            99999999998776    69999999998765431     23455567776554322     223467777787777777


Q ss_pred             cCC
Q 024842          260 FGR  262 (262)
Q Consensus       260 ~G~  262 (262)
                      +|+
T Consensus       193 tg~  195 (274)
T cd06609         193 KGE  195 (274)
T ss_pred             hCC
Confidence            774

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)

>KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.96  E-value=5.1e-30  Score=212.49  Aligned_cols=194  Identities=24%  Similarity=0.336  Sum_probs=154.7

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc--hHHHHHHHHHHHHhhhC
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN--NEQLEMVREEIRVSSLF  102 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~--~~~~~~~~~E~~~l~~l  102 (262)
                      ..-|.+.+.||+|.|+.|-+|++..+++.                      ||+|++...+  .....++..|++.++.+
T Consensus        17 AGLYDLekTlG~GHFAVVKLArHVFTGek----------------------VAVKviDKTKlD~~st~hlfqEVRCMKLV   74 (864)
T KOG4717|consen   17 AGLYDLEKTLGRGHFAVVKLARHVFTGEK----------------------VAVKVIDKTKLDTLSTGHLFQEVRCMKLV   74 (864)
T ss_pred             eeeehhhhhhcCCceehhhhhhhhcccce----------------------eEEEEecccccchhhhhHHHHHHHHHHHh
Confidence            35799999999999999999999999874                      5666554442  22346788899999999


Q ss_pred             CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCe
Q 024842          103 SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPY  182 (262)
Q Consensus       103 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~i  182 (262)
                      +||||+++|++.          .....+|+++|.-.+|+|++++-.   ....+.++.+.+++.||+.|+.|+|+..  +
T Consensus        75 QHpNiVRLYEVi----------DTQTKlyLiLELGD~GDl~DyImK---He~Gl~E~La~kYF~QI~~AI~YCHqLH--V  139 (864)
T KOG4717|consen   75 QHPNIVRLYEVI----------DTQTKLYLILELGDGGDLFDYIMK---HEEGLNEDLAKKYFAQIVHAISYCHQLH--V  139 (864)
T ss_pred             cCcCeeeeeehh----------cccceEEEEEEecCCchHHHHHHh---hhccccHHHHHHHHHHHHHHHHHHhhhh--h
Confidence            999999999987          668899999999899999998863   4455999999999999999999999977  9


Q ss_pred             eecCCCCCcEEEecCCCCCCceEEeeccceeeccccCc----cCcccCCcccchhhhhhhhhhhhhcCcccchheeheec
Q 024842          183 AHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKFA----LGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMREL  258 (262)
Q Consensus       183 vH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~~----~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l  258 (262)
                      |||||||+|+.+...-+   .+||.|||++-.+.+...    .|+-.|++||-+.+-.+..+-    -|||++|+++|-|
T Consensus       140 VHRDLKPENVVFFEKlG---lVKLTDFGFSNkf~PG~kL~TsCGSLAYSAPEILLGDsYDAPA----VDiWSLGVILyML  212 (864)
T KOG4717|consen  140 VHRDLKPENVVFFEKLG---LVKLTDFGFSNKFQPGKKLTTSCGSLAYSAPEILLGDSYDAPA----VDIWSLGVILYML  212 (864)
T ss_pred             hcccCCcceeEEeeecC---ceEeeeccccccCCCcchhhcccchhhccCchhhhcCccCCcc----hhhhHHHHHHHHH
Confidence            99999999999864332   799999999988776543    355667777655443333332    4677777777777


Q ss_pred             ccCC
Q 024842          259 MFGR  262 (262)
Q Consensus       259 ~~G~  262 (262)
                      +||+
T Consensus       213 VCGq  216 (864)
T KOG4717|consen  213 VCGQ  216 (864)
T ss_pred             HhCC
Confidence            7774

>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1

Probab=99.96  E-value=4.6e-29  Score=205.21  Aligned_cols=194  Identities=18%  Similarity=0.235  Sum_probs=139.9

Q ss_pred             CceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhc-cchHHHHHHHHHHHHhhhC-C
Q 024842           26 NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLI-QNNEQLEMVREEIRVSSLF-S  103 (262)
Q Consensus        26 ~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~-~~~~~~~~~~~E~~~l~~l-~  103 (262)
                      ++|++.+.||+|+||.||+|.+..++..                    ..+++|.... ......+.+..|+.+++.+ +
T Consensus         2 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~--------------------~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l~~   61 (297)
T cd05089           2 EDIKFEDVIGEGNFGQVIRAMIKKDGLK--------------------MNAAIKMLKEFASENDHRDFAGELEVLCKLGH   61 (297)
T ss_pred             ccceeeeeecCCCcceEEEEEecCCCCc--------------------ceeEEEEccccCCHHHHHHHHHHHHHHHhhcC
Confidence            6899999999999999999988765431                    1245555543 2334456788899999888 7


Q ss_pred             CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhh------------cCCCCCHHHHHHHHHHHHHH
Q 024842          104 HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQT------------KKEFFSTSDVLQIFYQICAG  171 (262)
Q Consensus       104 h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~------------~~~~~~~~~~~~i~~ql~~~  171 (262)
                      ||||+++++.+          ......+++|||+++++|.+++.....            ....+++..++.++.|++.|
T Consensus        62 hp~iv~~~~~~----------~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~a  131 (297)
T cd05089          62 HPNIINLLGAC----------ENRGYLYIAIEYAPYGNLLDFLRKSRVLETDPAFAKEHGTASTLTSQQLLQFASDVATG  131 (297)
T ss_pred             CCchhheEEEE----------ccCCcceEEEEecCCCcHHHHHHhccccccccccccccCccCCCCHHHHHHHHHHHHHH
Confidence            99999999887          335678999999999999998853211            11358899999999999999


Q ss_pred             HHHHHcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC----ccCcccCCcccchhhhhhhhhhhhhcCc
Q 024842          172 LKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF----ALGQRRYSCRNGLLSIVLHLSELLSCGT  247 (262)
Q Consensus       172 l~~lH~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~~~~~~~~d~~s~g~~~~e~~~~~~  247 (262)
                      |+|||+.+  ++||||||+||+++.++    .+||+|||++.......    ......|.+||.+.+-.     .....|
T Consensus       132 l~~lH~~~--ivH~dlkp~Nill~~~~----~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-----~~~~~D  200 (297)
T cd05089         132 MQYLSEKQ--FIHRDLAARNVLVGENL----ASKIADFGLSRGEEVYVKKTMGRLPVRWMAIESLNYSV-----YTTKSD  200 (297)
T ss_pred             HHHHHHCC--cccCcCCcceEEECCCC----eEEECCcCCCccccceeccCCCCcCccccCchhhccCC-----CCchhh
Confidence            99999988  99999999999998766    69999999986432111    11122355555332211     112356


Q ss_pred             ccchheeheeccc
Q 024842          248 VRVIQILMRELMF  260 (262)
Q Consensus       248 v~~~g~~~~~l~~  260 (262)
                      +||+|+++|+|++
T Consensus       201 vwSlG~il~el~t  213 (297)
T cd05089         201 VWSFGVLLWEIVS  213 (297)
T ss_pred             HHHHHHHHHHHHc
Confidence            6666666666654

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.

>cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

Probab=99.96  E-value=2.2e-29  Score=208.66  Aligned_cols=201  Identities=24%  Similarity=0.293  Sum_probs=148.2

Q ss_pred             ceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc---hHHHHHHHHHHHHhhhCC
Q 024842           27 RYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN---NEQLEMVREEIRVSSLFS  103 (262)
Q Consensus        27 ~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~---~~~~~~~~~E~~~l~~l~  103 (262)
                      +|++.+.||+|++|.||+|.+...+                    .+..+++|.+....   ....+.+.+|+.+++.++
T Consensus         1 ~y~~~~~ig~g~~g~v~~~~~~~~~--------------------~~~~~alK~~~~~~~~~~~~~~~~~~e~~~l~~l~   60 (316)
T cd07842           1 KYEIEGCIGRGTYGRVYKAKRKNGK--------------------DGKEYAIKKFKGDKEQYTGISQSACREIALLRELK   60 (316)
T ss_pred             CceEEEEeccCCcEEEEEEEecCCC--------------------CCCeEEEEEeccccccccCccHHHHHHHHHHHhcC
Confidence            4889999999999999999987620                    13367888776532   333456778999999999


Q ss_pred             CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcC-CCCCHHHHHHHHHHHHHHHHHHHcCCCCe
Q 024842          104 HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKK-EFFSTSDVLQIFYQICAGLKHMHSLEPPY  182 (262)
Q Consensus       104 h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~-~~~~~~~~~~i~~ql~~~l~~lH~~~~~i  182 (262)
                      ||||+++++.+..        ......+++||++.+ ++.+++....... ..+++..++.++.|++.||.|||+.+  +
T Consensus        61 h~~i~~~~~~~~~--------~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~--i  129 (316)
T cd07842          61 HENVVSLVEVFLE--------HADKSVYLLFDYAEH-DLWQIIKFHRQAKRVSIPPSMVKSLLWQILNGVHYLHSNW--V  129 (316)
T ss_pred             CCCccceEEEEeC--------CCCceEEEEEeCCCc-CHHHHHHhhccCCCcCcCHHHHHHHHHHHHHHHHHHHhCC--E
Confidence            9999999998842        323679999998764 6666665433322 36899999999999999999999998  9


Q ss_pred             eecCCCCCcEEEecCCCCCCceEEeeccceeeccccCc--------cCcccCCcccchhhhhhhhhhhhhcCcccchhee
Q 024842          183 AHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKFA--------LGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQIL  254 (262)
Q Consensus       183 vH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~~--------~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~  254 (262)
                      +|+||||+||+++.+++....+||+|||++........        .++..|.+||.+....    ......|+|++|++
T Consensus       130 ~h~dlkp~Nil~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~----~~~~~~Dv~slG~~  205 (316)
T cd07842         130 LHRDLKPANILVMGEGPERGVVKIGDLGLARLFNAPLKPLADLDPVVVTIWYRAPELLLGAR----HYTKAIDIWAIGCI  205 (316)
T ss_pred             eeCCCCHHHEEEcCCCCccceEEECCCccccccCCCcccccccCCccccccccCHHHHhCCC----CCCcHHHHHHHHHH
Confidence            99999999999988443344899999999886543221        2344566666442111    11223688888888


Q ss_pred             heecccCC
Q 024842          255 MRELMFGR  262 (262)
Q Consensus       255 ~~~l~~G~  262 (262)
                      +++|++|+
T Consensus       206 l~~l~~~~  213 (316)
T cd07842         206 FAELLTLE  213 (316)
T ss_pred             HHHHHhcC
Confidence            88888774

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the

>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

Probab=99.96  E-value=3.9e-29  Score=203.74  Aligned_cols=197  Identities=19%  Similarity=0.239  Sum_probs=150.7

Q ss_pred             ecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc-hHHHHHHHHHHHHhhh
Q 024842           23 INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN-NEQLEMVREEIRVSSL  101 (262)
Q Consensus        23 ~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~-~~~~~~~~~E~~~l~~  101 (262)
                      +...+|++.+.||+|+||.||+|.+..+++..                  ...+++|...... ......+.+|+.+++.
T Consensus         4 ~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~~------------------~~~~aik~~~~~~~~~~~~~~~~e~~~l~~   65 (279)
T cd05057           4 LKETELEKIKVLGSGAFGTVYKGVWIPEGEKV------------------KIPVAIKVLREETSPKANKEILDEAYVMAS   65 (279)
T ss_pred             cCHHHcEEcceecCCCCccEEEEEEecCCCCc------------------ceEEEEEeccCCCCHHHHHHHHHHHHHHHh
Confidence            45678999999999999999999987655421                  1257777665443 3445678899999999


Q ss_pred             CCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCC
Q 024842          102 FSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPP  181 (262)
Q Consensus       102 l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~  181 (262)
                      ++|||++++++.+.           ....+++|||+.+++|.+++..   ....+++..++.++.|++.||+|||+++  
T Consensus        66 l~h~~i~~~~~~~~-----------~~~~~~v~e~~~~g~L~~~l~~---~~~~~~~~~~~~~~~qi~~~l~~LH~~~--  129 (279)
T cd05057          66 VDHPHVVRLLGICL-----------SSQVQLITQLMPLGCLLDYVRN---HKDNIGSQYLLNWCVQIAKGMSYLEEKR--  129 (279)
T ss_pred             CCCCCcceEEEEEe-----------cCceEEEEecCCCCcHHHHHHh---ccCCCCHHHHHHHHHHHHHHHHHHHhCC--
Confidence            99999999998763           2578999999999999998752   3345899999999999999999999988  


Q ss_pred             eeecCCCCCcEEEecCCCCCCceEEeeccceeeccccCc-------cCcccCCcccchhhhhhhhhhhhhcCcccchhee
Q 024842          182 YAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKFA-------LGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQIL  254 (262)
Q Consensus       182 ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~~-------~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~  254 (262)
                      ++|+||||+||+++.++    .++|+|||.+........       ..+..|.+||.+..-     .....+|+|++|++
T Consensus       130 i~H~di~p~nil~~~~~----~~kL~dfg~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~-----~~~~~~Di~slG~~  200 (279)
T cd05057         130 LVHRDLAARNVLVKTPQ----HVKITDFGLAKLLDVDEKEYHAEGGKVPIKWMALESILHR-----IYTHKSDVWSYGVT  200 (279)
T ss_pred             EEecccCcceEEEcCCC----eEEECCCcccccccCcccceecCCCcccccccCHHHhhcC-----CcCchhhHHHHHHH
Confidence            99999999999998766    699999999986543221       112346666643221     11224678888888


Q ss_pred             heeccc-CC
Q 024842          255 MRELMF-GR  262 (262)
Q Consensus       255 ~~~l~~-G~  262 (262)
                      ++|+++ |+
T Consensus       201 l~el~~~g~  209 (279)
T cd05057         201 VWELMTFGA  209 (279)
T ss_pred             HHHHhcCCC
Confidence            888776 53

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea

>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity

Probab=99.96  E-value=2.1e-29  Score=203.26  Aligned_cols=191  Identities=26%  Similarity=0.341  Sum_probs=141.4

Q ss_pred             EEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc-chHHHHHHHHHHHHhhhCCCCCc
Q 024842           29 RILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ-NNEQLEMVREEIRVSSLFSHRNL  107 (262)
Q Consensus        29 ~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~-~~~~~~~~~~E~~~l~~l~h~~i  107 (262)
                      ++.+.||.|.||.||+|.+.....                  .....|++|.+... .....+.+.+|++.++.++||||
T Consensus         2 ~~~~~ig~G~fg~v~~~~~~~~~~------------------~~~~~V~vk~~~~~~~~~~~~~~~~e~~~l~~l~h~ni   63 (259)
T PF07714_consen    2 KLIKQIGEGSFGKVYRAEWKQKDN------------------DKNQPVAVKILKPSSSEEEEEEFLNEIQILRKLRHPNI   63 (259)
T ss_dssp             EEEEEEEEESSEEEEEEEEESTTT------------------SSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTHSBTTB
T ss_pred             EEeeEEccCCCcEEEEEEEEcccC------------------CCCEEEEEEEeccccccccceeeeeccccccccccccc
Confidence            578899999999999999883111                  12457888888554 33447889999999999999999


Q ss_pred             cchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeeecCC
Q 024842          108 LPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDV  187 (262)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~di  187 (262)
                      +++++.+.          .....++++||+..++|.+++...  ....+++..++.++.|++.||.|||+++  ++|+||
T Consensus        64 ~~~~g~~~----------~~~~~~lv~e~~~~g~L~~~L~~~--~~~~~~~~~~~~i~~~i~~~l~~Lh~~~--iiH~~l  129 (259)
T PF07714_consen   64 VKLYGFCI----------ENEPLFLVMEYCPGGSLDDYLKSK--NKEPLSEQQRLSIAIQIAEALSYLHSNN--IIHGNL  129 (259)
T ss_dssp             E-EEEEEE----------SSSSEEEEEE--TTEBHHHHHHHT--CTTTSBHHHHHHHHHHHHHHHHHHHHTT--EEEST-
T ss_pred             cccccccc----------cccccccccccccccccccccccc--cccccccccccccccccccccccccccc--cccccc
Confidence            99999984          245589999999999999998743  1356999999999999999999999988  999999


Q ss_pred             CCCcEEEecCCCCCCceEEeeccceeeccccC-------ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheeccc
Q 024842          188 KPGNILITCRKGQPPLAILMDFGSARPAQSKF-------ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMF  260 (262)
Q Consensus       188 kp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-------~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~  260 (262)
                      +|+||+++.++    .+||+|||++.......       ......|.+||.+....     ....+|||++|++++|+++
T Consensus       130 ~~~nill~~~~----~~Kl~~f~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~-----~~~ksDVysfG~~l~ei~~  200 (259)
T PF07714_consen  130 SPSNILLDSNG----QVKLSDFGLSRPISEKSKYKNDSSQQLPLRYLAPEVLKDGE-----YTKKSDVYSFGMLLYEILT  200 (259)
T ss_dssp             SGGGEEEETTT----EEEEESTTTGEETTTSSSEEESTTSESGGGGS-HHHHHHSE-----ESHHHHHHHHHHHHHHHHT
T ss_pred             ccccccccccc----ccccccccccccccccccccccccccccccccccccccccc-----ccccccccccccccccccc
Confidence            99999998877    79999999998763211       12333444444322111     1223677777777777766

Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....

>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

Probab=99.96  E-value=2.5e-29  Score=206.53  Aligned_cols=210  Identities=20%  Similarity=0.233  Sum_probs=153.5

Q ss_pred             cCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc-hHHHHHHHHHHHHhhhC
Q 024842           24 NENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN-NEQLEMVREEIRVSSLF  102 (262)
Q Consensus        24 ~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~-~~~~~~~~~E~~~l~~l  102 (262)
                      ..++|++.+.||+|+||.||+|.+...+......      ............+++|.+.... ....+.+.+|+++++.+
T Consensus         3 ~~~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~------~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~l   76 (296)
T cd05051           3 PRQPLNFVEKLGEGQFGEVHLCEADGLQDFSEKA------FAENDNADAPVLVAVKVLRPDASDNAREDFLKEVKILSRL   76 (296)
T ss_pred             chhhCcccccccCCCCccEEEEEeccCCcccccc------cccccccCCceeEEEEEecCccCHHHHHHHHHHHHHHHhc
Confidence            3568999999999999999999987765432111      0011112234578888876543 34467788999999999


Q ss_pred             CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhh-------cCCCCCHHHHHHHHHHHHHHHHHH
Q 024842          103 SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQT-------KKEFFSTSDVLQIFYQICAGLKHM  175 (262)
Q Consensus       103 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~-------~~~~~~~~~~~~i~~ql~~~l~~l  175 (262)
                      +|||++++++.+.          ..+..+++||++.+++|.+++.....       ....+++..++.++.|++.||.||
T Consensus        77 ~~~~i~~~~~~~~----------~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~L  146 (296)
T cd05051          77 SDPNIARLLGVCT----------VDPPLCMIMEYMENGDLNQFLQKHVAETSGLACNSKSLSFSTLLYMATQIASGMRYL  146 (296)
T ss_pred             CCCCEeEEEEEEe----------cCCCcEEEEecCCCCCHHHHHHhcccccccccccCCCCCHHHHHHHHHHHHHHHHHH
Confidence            9999999998873          34678999999999999998864321       112589999999999999999999


Q ss_pred             HcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-------ccCcccCCcccchhhhhhhhhhhhhcCcc
Q 024842          176 HSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-------ALGQRRYSCRNGLLSIVLHLSELLSCGTV  248 (262)
Q Consensus       176 H~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-------~~~~~~~~~~~d~~s~g~~~~e~~~~~~v  248 (262)
                      |+.+  ++|+||||+||+++.++    .++|+|||++.......       ...+..|++||.+..-     ......||
T Consensus       147 H~~~--i~H~dlkp~Nili~~~~----~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-----~~~~~~Dv  215 (296)
T cd05051         147 ESLN--FVHRDLATRNCLVGKNY----TIKIADFGMSRNLYSSDYYRVQGRAPLPIRWMAWESVLLG-----KFTTKSDV  215 (296)
T ss_pred             HHcC--ccccccchhceeecCCC----ceEEccccceeecccCcceeecCcCCCCceecCHHHhhcC-----CCCccchh
Confidence            9988  99999999999998775    79999999987643322       1223356666543221     12234677


Q ss_pred             cchheeheeccc
Q 024842          249 RVIQILMRELMF  260 (262)
Q Consensus       249 ~~~g~~~~~l~~  260 (262)
                      |++|+++|+|++
T Consensus       216 ~slG~~l~el~~  227 (296)
T cd05051         216 WAFGVTLWEILT  227 (296)
T ss_pred             hhhHHHHHHHHh
Confidence            777777777655

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke

>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

Probab=99.96  E-value=4e-29  Score=201.63  Aligned_cols=193  Identities=19%  Similarity=0.280  Sum_probs=147.5

Q ss_pred             eecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhh
Q 024842           22 WINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSL  101 (262)
Q Consensus        22 ~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~  101 (262)
                      ++..++|++.++||+|+||.||+|....                       ++.+++|.+...... ...+.+|+.+++.
T Consensus         2 ~~~~~~~~~~~~ig~G~~g~v~~~~~~~-----------------------~~~~a~K~~~~~~~~-~~~~~~E~~~l~~   57 (260)
T cd05067           2 EVPRETLKLVKKLGAGQFGEVWMGYYNG-----------------------HTKVAIKSLKQGSMS-PEAFLAEANLMKQ   57 (260)
T ss_pred             ccchHHceeeeeeccCccceEEeeecCC-----------------------CceEEEEEecCCCCc-HHHHHHHHHHHHh
Confidence            4678899999999999999999998642                       235788876544332 3578889999999


Q ss_pred             CCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCC
Q 024842          102 FSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPP  181 (262)
Q Consensus       102 l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~  181 (262)
                      ++|+|++++++.+.           ....+++||++.+++|.+++...  ....+++.+++.++.|++.||+|||+.+  
T Consensus        58 l~h~~i~~~~~~~~-----------~~~~~~v~e~~~~~~L~~~~~~~--~~~~~~~~~~~~i~~~i~~al~~LH~~~--  122 (260)
T cd05067          58 LQHPRLVRLYAVVT-----------QEPIYIITEYMENGSLVDFLKTP--EGIKLTINKLIDMAAQIAEGMAFIERKN--  122 (260)
T ss_pred             cCCcCeeeEEEEEc-----------cCCcEEEEEcCCCCCHHHHHHhc--CCCCCCHHHHHHHHHHHHHHHHHHhcCC--
Confidence            99999999987652           34589999999999999887532  2345899999999999999999999988  


Q ss_pred             eeecCCCCCcEEEecCCCCCCceEEeeccceeeccccCc------cCcccCCcccchhhhhhhhhhhhhcCcccchheeh
Q 024842          182 YAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKFA------LGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILM  255 (262)
Q Consensus       182 ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~~------~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~  255 (262)
                      ++|+||||+||+++.++    .++|+|||++........      .+...|.+|+.+....     .....|+|++|+++
T Consensus       123 i~H~dl~p~ni~i~~~~----~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~-----~~~~~Di~slG~~l  193 (260)
T cd05067         123 YIHRDLRAANILVSETL----CCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGT-----FTIKSDVWSFGILL  193 (260)
T ss_pred             eecccccHHhEEEcCCC----CEEEccCcceeecCCCCcccccCCcccccccCHHHhccCC-----cCcccchHHHHHHH
Confidence            99999999999998776    699999999986652211      2234566666442211     12236777777777


Q ss_pred             eeccc-CC
Q 024842          256 RELMF-GR  262 (262)
Q Consensus       256 ~~l~~-G~  262 (262)
                      +++++ |+
T Consensus       194 ~el~~~g~  201 (260)
T cd05067         194 TEIVTYGR  201 (260)
T ss_pred             HHHHhCCC
Confidence            77776 53

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr

>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src

Probab=99.96  E-value=2.9e-29  Score=202.77  Aligned_cols=190  Identities=22%  Similarity=0.290  Sum_probs=143.4

Q ss_pred             ecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhC
Q 024842           23 INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLF  102 (262)
Q Consensus        23 ~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l  102 (262)
                      ++.++|++.++||+|++|.||+|.+..+                       ..+++|+...... ..+.+.+|+.+++.+
T Consensus         3 ~~~~~~~~~~~lg~g~~~~v~~~~~~~~-----------------------~~valK~~~~~~~-~~~~~~~E~~~l~~l   58 (262)
T cd05071           3 IPRESLRLEVKLGQGCFGEVWMGTWNGT-----------------------TRVAIKTLKPGTM-SPEAFLQEAQVMKKL   58 (262)
T ss_pred             CChHHeeEeeecCCCCCCcEEEEEecCC-----------------------ceEEEEecccCcc-CHHHHHHHHHHHHhC
Confidence            5678899999999999999999987543                       2467776654322 235678899999999


Q ss_pred             CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCe
Q 024842          103 SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPY  182 (262)
Q Consensus       103 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~i  182 (262)
                      +||||+++++.+.           ....+++||++.+++|.+++...  ....+++..++.++.|++.||.|||+.+  +
T Consensus        59 ~~~~i~~~~~~~~-----------~~~~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~~~~~l~~aL~~lH~~~--i  123 (262)
T cd05071          59 RHEKLVQLYAVVS-----------EEPIYIVTEYMSKGSLLDFLKGE--MGKYLRLPQLVDMAAQIASGMAYVERMN--Y  123 (262)
T ss_pred             CCCCcceEEEEEC-----------CCCcEEEEEcCCCCcHHHHHhhc--cccCCCHHHHHHHHHHHHHHHHHHHHCC--c
Confidence            9999999987652           34578999999999999988632  2235789999999999999999999988  9


Q ss_pred             eecCCCCCcEEEecCCCCCCceEEeeccceeeccccCc------cCcccCCcccchhhhhhhhhhhhhcCcccchheehe
Q 024842          183 AHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKFA------LGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMR  256 (262)
Q Consensus       183 vH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~~------~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~  256 (262)
                      +|+||||+||+++.++    .++|+|||.+........      .++..|.+||.+...     ......|+|++|+++|
T Consensus       124 ~H~dl~p~Nill~~~~----~~~L~dfg~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~-----~~~~~~DvwslG~~l~  194 (262)
T cd05071         124 VHRDLRAANILVGENL----VCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYG-----RFTIKSDVWSFGILLT  194 (262)
T ss_pred             cccccCcccEEEcCCC----cEEeccCCceeeccccccccccCCcccceecCHhHhccC-----CCCchhhHHHHHHHHH
Confidence            9999999999998766    699999999976543221      223346666643211     1122356777777777


Q ss_pred             eccc
Q 024842          257 ELMF  260 (262)
Q Consensus       257 ~l~~  260 (262)
                      +|++
T Consensus       195 ellt  198 (262)
T cd05071         195 ELTT  198 (262)
T ss_pred             HHHc
Confidence            7666

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo

>KOG0599 consensus Phosphorylase kinase gamma subunit [Carbohydrate transport and metabolism]

Probab=99.96  E-value=5.7e-31  Score=202.52  Aligned_cols=191  Identities=23%  Similarity=0.281  Sum_probs=149.6

Q ss_pred             CceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc--------chHHHHHHHHHHH
Q 024842           26 NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ--------NNEQLEMVREEIR   97 (262)
Q Consensus        26 ~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~--------~~~~~~~~~~E~~   97 (262)
                      +.|...+.||+|..+.|-++....+++                      .+++|++...        .....+....|+.
T Consensus        17 ~~y~pkeilgrgvss~vrRci~k~t~~----------------------e~a~kii~~~at~~~~e~~~~~~EaT~~Ev~   74 (411)
T KOG0599|consen   17 AKYEPKEILGRGVSSVVRRCIHKETGK----------------------EFAVKIIDVTATTESGETPYEMREATRQEIS   74 (411)
T ss_pred             hhcChHHHhcccchhhhhhhhhccccc----------------------ceeEEEEEecccccCCccHHHHHHHHHHHHH
Confidence            467788899999999999999888766                      4555554321        1233466778999


Q ss_pred             HhhhC-CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHH
Q 024842           98 VSSLF-SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMH  176 (262)
Q Consensus        98 ~l~~l-~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH  176 (262)
                      +|+++ .||+|+++.+.|          +.....+++++.++.|.|+|++.    ....+++.....+++|++.|+.|||
T Consensus        75 ILRqv~GHP~II~l~D~y----------es~sF~FlVFdl~prGELFDyLt----s~VtlSEK~tR~iMrqlfegVeylH  140 (411)
T KOG0599|consen   75 ILRQVMGHPYIIDLQDVY----------ESDAFVFLVFDLMPRGELFDYLT----SKVTLSEKETRRIMRQLFEGVEYLH  140 (411)
T ss_pred             HHHHhcCCCcEEEeeeec----------cCcchhhhhhhhcccchHHHHhh----hheeecHHHHHHHHHHHHHHHHHHH
Confidence            99988 599999999998          44667889999999999999997    5666999999999999999999999


Q ss_pred             cCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC----ccCcccCCcccchhhhhhhhhhh---h-hcCcc
Q 024842          177 SLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF----ALGQRRYSCRNGLLSIVLHLSEL---L-SCGTV  248 (262)
Q Consensus       177 ~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~~~~~~~~d~~s~g~~~~e~---~-~~~~v  248 (262)
                      ..+  |+||||||+|||++++.    .++|+|||+|..+++..    ..|++.|.+||.+..   .++|-   + -.-|.
T Consensus       141 a~~--IVHRDLKpENILlddn~----~i~isDFGFa~~l~~GekLrelCGTPgYLAPEtikC---~m~e~~pGYs~EVD~  211 (411)
T KOG0599|consen  141 ARN--IVHRDLKPENILLDDNM----NIKISDFGFACQLEPGEKLRELCGTPGYLAPETIKC---SMYENHPGYSKEVDE  211 (411)
T ss_pred             Hhh--hhhcccChhheeecccc----ceEEeccceeeccCCchhHHHhcCCCcccChhheee---ecccCCCCccchhhH
Confidence            999  99999999999998877    69999999999988765    368888888875421   11110   0 01356


Q ss_pred             cchheeheecccC
Q 024842          249 RVIQILMRELMFG  261 (262)
Q Consensus       249 ~~~g~~~~~l~~G  261 (262)
                      |+.|++||-|+.|
T Consensus       212 Wa~GVImyTLLaG  224 (411)
T KOG0599|consen  212 WACGVIMYTLLAG  224 (411)
T ss_pred             HHHHHHHHHHHcC
Confidence            6666666666655

>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

Probab=99.96  E-value=2.8e-29  Score=202.06  Aligned_cols=151  Identities=22%  Similarity=0.360  Sum_probs=129.0

Q ss_pred             ecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhC
Q 024842           23 INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLF  102 (262)
Q Consensus        23 ~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l  102 (262)
                      +..++|++.+.||+|++|.||+|...                        ++.+++|....... ..+++.+|+.+++.+
T Consensus         3 ~~~~~~~~~~~ig~g~~g~v~~~~~~------------------------~~~v~iK~~~~~~~-~~~~~~~e~~~l~~l   57 (256)
T cd05039           3 INSKELKLGATIGKGEFGDVMLGDYR------------------------GQKVAVKCLKDDST-AAQAFLAEASVMTTL   57 (256)
T ss_pred             cChhhccceeeeecCCCceEEEEEec------------------------CcEEEEEEeccchh-HHHHHHHHHHHHHhc
Confidence            46789999999999999999999864                        23678888766544 457788999999999


Q ss_pred             CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCe
Q 024842          103 SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPY  182 (262)
Q Consensus       103 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~i  182 (262)
                      +|+|++++++.+.          .....+++||++.+++|.+++....  ...+++..++.++.|++.||.|||+.+  +
T Consensus        58 ~~~~i~~~~~~~~----------~~~~~~~v~e~~~~~~L~~~~~~~~--~~~~~~~~~~~~~~qi~~~l~~lh~~~--i  123 (256)
T cd05039          58 RHPNLVQLLGVVL----------QGNPLYIVTEYMAKGSLVDYLRSRG--RAVITLAQQLGFALDVCEGMEYLEEKN--F  123 (256)
T ss_pred             CCcceeeeEEEEc----------CCCCeEEEEEecCCCcHHHHHHhcC--CCCCCHHHHHHHHHHHHHHHHHHHhCC--c
Confidence            9999999998873          3567899999999999999886321  125899999999999999999999998  9


Q ss_pred             eecCCCCCcEEEecCCCCCCceEEeeccceeecc
Q 024842          183 AHNDVKPGNILITCRKGQPPLAILMDFGSARPAQ  216 (262)
Q Consensus       183 vH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~  216 (262)
                      +|+||||+||+++.++    .++|+|||.+....
T Consensus       124 ~H~di~p~Nili~~~~----~~~l~d~g~~~~~~  153 (256)
T cd05039         124 VHRDLAARNVLVSEDL----VAKVSDFGLAKEAS  153 (256)
T ss_pred             cchhcccceEEEeCCC----CEEEcccccccccc
Confidence            9999999999998776    69999999988654

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk

>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

Probab=99.96  E-value=8.4e-29  Score=200.54  Aligned_cols=155  Identities=19%  Similarity=0.296  Sum_probs=128.3

Q ss_pred             cCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc-hHHHHHHHHHHHHhhhC
Q 024842           24 NENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN-NEQLEMVREEIRVSSLF  102 (262)
Q Consensus        24 ~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~-~~~~~~~~~E~~~l~~l  102 (262)
                      +.++|++.+.||+|+||.||+|.+..+++                   ....+++|.+.... ....+.+.+|+.+++.+
T Consensus         2 ~~~~~~~~~~lg~g~~g~v~~~~~~~~~~-------------------~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l   62 (267)
T cd05066           2 DASCIKIEKVIGAGEFGEVCSGRLKLPGK-------------------REIPVAIKTLKAGYTEKQRRDFLSEASIMGQF   62 (267)
T ss_pred             CHHHeEeeeeecccCCCceEEEEEecCCC-------------------CceEEEEEECCCCCCHHHHHHHHHHHHHHHhC
Confidence            45789999999999999999998765433                   12357777765432 33456788999999999


Q ss_pred             CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCe
Q 024842          103 SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPY  182 (262)
Q Consensus       103 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~i  182 (262)
                      +||||+++++.+          ...+..+++|||+.+++|.+++..   ....+++.+++.++.|++.||.+||+.+  +
T Consensus        63 ~h~~i~~~~~~~----------~~~~~~~lv~e~~~~~~L~~~~~~---~~~~~~~~~~~~i~~~i~~~l~~lH~~~--i  127 (267)
T cd05066          63 DHPNIIHLEGVV----------TKSKPVMIVTEYMENGSLDAFLRK---HDGQFTVIQLVGMLRGIASGMKYLSDMG--Y  127 (267)
T ss_pred             CCCCcceEEEEE----------ecCCccEEEEEcCCCCCHHHHHHh---cCCCCCHHHHHHHHHHHHHHHHHHHHCC--E
Confidence            999999999887          335678999999999999988752   2345899999999999999999999998  9


Q ss_pred             eecCCCCCcEEEecCCCCCCceEEeeccceeecc
Q 024842          183 AHNDVKPGNILITCRKGQPPLAILMDFGSARPAQ  216 (262)
Q Consensus       183 vH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~  216 (262)
                      +|+||||+||+++.++    .++|+|||++....
T Consensus       128 ~h~dlkp~nili~~~~----~~~l~dfg~~~~~~  157 (267)
T cd05066         128 VHRDLAARNILVNSNL----VCKVSDFGLSRVLE  157 (267)
T ss_pred             eehhhchhcEEECCCC----eEEeCCCCcccccc
Confidence            9999999999997765    79999999987654

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul

>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.96  E-value=6.6e-30  Score=185.63  Aligned_cols=186  Identities=24%  Similarity=0.297  Sum_probs=151.1

Q ss_pred             CceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc--hHHHHHHHHHHHHhhhCC
Q 024842           26 NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN--NEQLEMVREEIRVSSLFS  103 (262)
Q Consensus        26 ~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~--~~~~~~~~~E~~~l~~l~  103 (262)
                      .+|.-.++||+|.+|+||+|++..+.+                      .||+|++....  +.......+|+-+++.++
T Consensus         2 ~~ydkmekigegtygtvfkarn~~t~e----------------------ivalkrvrlddddegvpssalreicllkelk   59 (292)
T KOG0662|consen    2 QKYDKMEKIGEGTYGTVFKARNRETHE----------------------IVALKRVRLDDDDEGVPSSALREICLLKELK   59 (292)
T ss_pred             cchHHHHhhcCCcceeeEecccCCccc----------------------eEEEEEEeccCCCCCCcHHHHHHHHHHHHhh
Confidence            356777899999999999999988766                      67777766543  223456788999999999


Q ss_pred             CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCee
Q 024842          104 HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYA  183 (262)
Q Consensus       104 h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~iv  183 (262)
                      |.||+++++...+          ....-+++++|. .+|.++.+   +-++.+..+.+..++.|++.||.|+|+.+  +.
T Consensus        60 hknivrl~dvlhs----------dkkltlvfe~cd-qdlkkyfd---slng~~d~~~~rsfmlqllrgl~fchshn--vl  123 (292)
T KOG0662|consen   60 HKNIVRLHDVLHS----------DKKLTLVFEFCD-QDLKKYFD---SLNGDLDPEIVRSFMLQLLRGLGFCHSHN--VL  123 (292)
T ss_pred             hcceeehhhhhcc----------CceeEEeHHHhh-HHHHHHHH---hcCCcCCHHHHHHHHHHHHhhhhhhhhhh--hh
Confidence            9999999998742          567889999875 35555554   45667999999999999999999999999  99


Q ss_pred             ecCCCCCcEEEecCCCCCCceEEeeccceeecccc-----------------CccCcccCCcccchhhhhhhhhhhhhcC
Q 024842          184 HNDVKPGNILITCRKGQPPLAILMDFGSARPAQSK-----------------FALGQRRYSCRNGLLSIVLHLSELLSCG  246 (262)
Q Consensus       184 H~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~-----------------~~~~~~~~~~~~d~~s~g~~~~e~~~~~  246 (262)
                      |||+||.|.++..++    .+||+|||+++-+.-+                 ...+...|+...|+||.||++.|+...|
T Consensus       124 hrdlkpqnllin~ng----elkladfglarafgipvrcysaevvtlwyrppdvlfgakly~tsidmwsagcifaelanag  199 (292)
T KOG0662|consen  124 HRDLKPQNLLINRNG----ELKLADFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAG  199 (292)
T ss_pred             hccCCcceEEeccCC----cEEecccchhhhcCCceEeeeceeeeeeccCcceeeeeehhccchHhhhcchHHHHHhhcC
Confidence            999999999998877    7999999998844321                 2357788999999999999999998776


Q ss_pred             cccchhe
Q 024842          247 TVRVIQI  253 (262)
Q Consensus       247 ~v~~~g~  253 (262)
                      -..+.|.
T Consensus       200 rplfpg~  206 (292)
T KOG0662|consen  200 RPLFPGN  206 (292)
T ss_pred             CCCCCCC
Confidence            6655554

>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

Probab=99.96  E-value=7.3e-29  Score=202.58  Aligned_cols=157  Identities=24%  Similarity=0.294  Sum_probs=127.3

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc-chHHHHHHHHHHHHhhhCC
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ-NNEQLEMVREEIRVSSLFS  103 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~-~~~~~~~~~~E~~~l~~l~  103 (262)
                      -++|++.+.||+|+||.||+|.+...+..                  ....+++|..... .......+.+|+.+++.++
T Consensus         4 ~~~~~~~~~lg~g~~g~vy~~~~~~~~~~------------------~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l~   65 (283)
T cd05090           4 LSAVRFMEELGECAFGKIYKGHLYLPGMD------------------HAQLVAIKTLKDINNPQQWGEFQQEASLMAELH   65 (283)
T ss_pred             hhhceeeeeccccCCcceEEEEEecCCCC------------------CcceEEEEeccCCCCHHHHHHHHHHHHHHhhCC
Confidence            46799999999999999999987543321                  2346788877643 3344467889999999999


Q ss_pred             CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhh-------------cCCCCCHHHHHHHHHHHHH
Q 024842          104 HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQT-------------KKEFFSTSDVLQIFYQICA  170 (262)
Q Consensus       104 h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~-------------~~~~~~~~~~~~i~~ql~~  170 (262)
                      ||||+++++.+          ......+++|||+.+++|.+++.....             ....+++..+..++.|++.
T Consensus        66 h~niv~~~~~~----------~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~  135 (283)
T cd05090          66 HPNIVCLLGVV----------TQEQPVCMLFEYLNQGDLHEFLIMRSPHSDVGCSSDEDGTVKSSLDHGDFLHIAIQIAA  135 (283)
T ss_pred             CCCeeeEEEEE----------ecCCceEEEEEcCCCCcHHHHHHhcCCCCccccccccccccccccCHHHHHHHHHHHHH
Confidence            99999999886          335678999999999999998753210             1234788999999999999


Q ss_pred             HHHHHHcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeec
Q 024842          171 GLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPA  215 (262)
Q Consensus       171 ~l~~lH~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~  215 (262)
                      ||.|||+++  ++|+||||+||+++.++    .++|+|||++...
T Consensus       136 al~~lH~~~--i~H~dlkp~nili~~~~----~~kl~dfg~~~~~  174 (283)
T cd05090         136 GMEYLSSHF--FVHKDLAARNILIGEQL----HVKISDLGLSREI  174 (283)
T ss_pred             HHHHHHhcC--eehhccccceEEEcCCC----cEEeccccccccc
Confidence            999999988  99999999999998766    6999999999764

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

Probab=99.96  E-value=7.1e-29  Score=203.09  Aligned_cols=196  Identities=18%  Similarity=0.196  Sum_probs=151.2

Q ss_pred             CceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc-hHHHHHHHHHHHHhhhCCC
Q 024842           26 NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN-NEQLEMVREEIRVSSLFSH  104 (262)
Q Consensus        26 ~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~-~~~~~~~~~E~~~l~~l~h  104 (262)
                      ++|...+.||.|++|.||++.+..+++                      .+++|.+.... ......+.+|+++++.++|
T Consensus         1 ~~~~~~~~lg~g~~~~v~~~~~~~~~~----------------------~~~~k~~~~~~~~~~~~~~~~e~~~l~~l~h   58 (287)
T cd06621           1 EKIVELSRLGEGAGGSVTKCRLKNTGM----------------------IFALKTITTDPNPDLQKQILRELEINKSCKS   58 (287)
T ss_pred             CceEEEEEeccCCceEEEEEEECCCCe----------------------EEEEEEEecCCchHHHHHHHHHHHHHHhCCC
Confidence            478999999999999999999876544                      67777665432 2345678899999999999


Q ss_pred             CCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeee
Q 024842          105 RNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAH  184 (262)
Q Consensus       105 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH  184 (262)
                      |||+++++.+..        ......+++|||+.+++|.+++.........+++..+..++.|++.||.|||+.+  ++|
T Consensus        59 ~~iv~~~~~~~~--------~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~lH~~~--i~H  128 (287)
T cd06621          59 PYIVKYYGAFLD--------ESSSSIGIAMEYCEGGSLDSIYKKVKKRGGRIGEKVLGKIAESVLKGLSYLHSRK--IIH  128 (287)
T ss_pred             CCeeeeeeEEEc--------cCCCeEEEEEEecCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCC--ccc
Confidence            999999987742        3345689999999999999887755555566899999999999999999999988  999


Q ss_pred             cCCCCCcEEEecCCCCCCceEEeeccceeeccccC---ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecccC
Q 024842          185 NDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF---ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMFG  261 (262)
Q Consensus       185 ~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~---~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~G  261 (262)
                      +||+|+||+++.++    .++|+|||++.......   ..++..|.+||.+....     .....|+|++|+++|+|++|
T Consensus       129 ~dl~~~nil~~~~~----~~~l~dfg~~~~~~~~~~~~~~~~~~y~~pE~~~~~~-----~~~~~Dv~slG~il~~l~~g  199 (287)
T cd06621         129 RDIKPSNILLTRKG----QVKLCDFGVSGELVNSLAGTFTGTSFYMAPERIQGKP-----YSITSDVWSLGLTLLEVAQN  199 (287)
T ss_pred             CCCCHHHEEEecCC----eEEEeeccccccccccccccccCCccccCHHHhcCCC-----CCchhhHHHHHHHHHHHHhC
Confidence            99999999998766    69999999987543222   23444566665442221     12235777777777777776


Q ss_pred             C
Q 024842          262 R  262 (262)
Q Consensus       262 ~  262 (262)
                      +
T Consensus       200 ~  200 (287)
T cd06621         200 R  200 (287)
T ss_pred             C
Confidence            4

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>PHA03210 serine/threonine kinase US3; Provisional

Probab=99.96  E-value=2.2e-29  Score=220.48  Aligned_cols=211  Identities=16%  Similarity=0.220  Sum_probs=138.8

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCCC
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSH  104 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~h  104 (262)
                      .++|++.+.||+|+||.||+|..............+  ...... ......++.|+.. ........+.+|+.+++.++|
T Consensus       147 ~~~Y~ii~~LG~G~fG~Vyl~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~k~~~-~~~~~~~~~~~Ei~il~~l~H  222 (501)
T PHA03210        147 LAHFRVIDDLPAGAFGKIFICALRASTEEAEARRGV--NSTNQG-KPKCERLIAKRVK-AGSRAAIQLENEILALGRLNH  222 (501)
T ss_pred             hhccEEEeEecCCCCcceEEEEEeccchhhhhhhcc--cccccc-chhhhhhHhHHhh-cchHHHHHHHHHHHHHHhCCC
Confidence            368999999999999999999875533221111100  000000 0001112223322 223345678899999999999


Q ss_pred             CCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhh-hcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCee
Q 024842          105 RNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQ-TKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYA  183 (262)
Q Consensus       105 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~-~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~iv  183 (262)
                      |||+++++++          ...+..|++++++. ++|.+++.... ..........+..++.||+.||.|||+++  |+
T Consensus       223 pnIv~l~~~~----------~~~~~~~lv~e~~~-~~l~~~l~~~~~~~~~~~~~~~~~~i~~ql~~aL~yLH~~g--Ii  289 (501)
T PHA03210        223 ENILKIEEIL----------RSEANTYMITQKYD-FDLYSFMYDEAFDWKDRPLLKQTRAIMKQLLCAVEYIHDKK--LI  289 (501)
T ss_pred             CCcCcEeEEE----------EECCeeEEEEeccc-cCHHHHHhhccccccccccHHHHHHHHHHHHHHHHHHHhCC--ee
Confidence            9999999987          33566788888764 56666553211 11122345678889999999999999998  99


Q ss_pred             ecCCCCCcEEEecCCCCCCceEEeeccceeeccccC------ccCcccCCcccchhhhhhhhhhhhhcCcccchheehee
Q 024842          184 HNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF------ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRE  257 (262)
Q Consensus       184 H~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~------~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~  257 (262)
                      ||||||+|||++.++    .+||+|||++..+....      ..++..|.+||.+..-+     .....||||+|+++||
T Consensus       290 HrDLKP~NILl~~~~----~vkL~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-----~~~~~DiwSlGvil~e  360 (501)
T PHA03210        290 HRDIKLENIFLNCDG----KIVLGDFGTAMPFEKEREAFDYGWVGTVATNSPEILAGDG-----YCEITDIWSCGLILLD  360 (501)
T ss_pred             cCCCCHHHEEECCCC----CEEEEeCCCceecCcccccccccccCCcCCCCchhhcCCC-----CCcHHHHHHHHHHHHH
Confidence            999999999998776    69999999998765432      24666777776443221     1123566666666666


Q ss_pred             cccC
Q 024842          258 LMFG  261 (262)
Q Consensus       258 l~~G  261 (262)
                      |++|
T Consensus       361 ll~~  364 (501)
T PHA03210        361 MLSH  364 (501)
T ss_pred             HHHC
Confidence            6654

>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

Probab=99.96  E-value=2.6e-29  Score=203.69  Aligned_cols=192  Identities=15%  Similarity=0.151  Sum_probs=135.1

Q ss_pred             EeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc-hHHHHHHHHHHHHhhhCCCCCccchh
Q 024842           33 QLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN-NEQLEMVREEIRVSSLFSHRNLLPLL  111 (262)
Q Consensus        33 ~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~~  111 (262)
                      .||+|+||.||+|.......                    ...+++|...... ......+.+|+.+++.++||||++++
T Consensus         2 ~lg~G~fg~v~~~~~~~~~~--------------------~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~h~nii~~~   61 (269)
T cd05042           2 EIGNGWFGKVLLGEAHRGMS--------------------KARVVVKELRASATPDEQLLFLQEVQPYRELNHPNVLQCL   61 (269)
T ss_pred             cCCccCCceEEEEEEecCCC--------------------CeEEEEeecCccCChHHHHHHHHHHHHHHhCCCCCcceEE
Confidence            58999999999997543211                    2256777665432 33345678899999999999999999


Q ss_pred             hhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhc-CCCCCHHHHHHHHHHHHHHHHHHHcCCCCeeecCCCCC
Q 024842          112 DHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTK-KEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPG  190 (262)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~-~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~dikp~  190 (262)
                      +.+          ......+++||++.+++|.+++...... ....++..++.++.|++.||+|||+++  ++||||||+
T Consensus        62 ~~~----------~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~--ivH~dlkp~  129 (269)
T cd05042          62 GQC----------IESIPYLLVLEFCPLGDLKNYLRSNRGMVAQMAQKDVLQRMACEVASGLLWLHQAD--FIHSDLALR  129 (269)
T ss_pred             EEE----------CCCCceEEEEEeCCCCcHHHHHHhccccccccccHHHHHHHHHHHHHHHHHHHhcC--EecccccHh
Confidence            887          3356789999999999999988643221 223567888999999999999999998  999999999


Q ss_pred             cEEEecCCCCCCceEEeeccceeeccccC-------ccCcccCCcccchhhhhh--hhhhhhhcCcccchheeheeccc
Q 024842          191 NILITCRKGQPPLAILMDFGSARPAQSKF-------ALGQRRYSCRNGLLSIVL--HLSELLSCGTVRVIQILMRELMF  260 (262)
Q Consensus       191 Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-------~~~~~~~~~~~d~~s~g~--~~~e~~~~~~v~~~g~~~~~l~~  260 (262)
                      ||+++.++    .+||+|||++.......       ...+..|.+||.+-..+.  .........|+|++|+++|||++
T Consensus       130 Nill~~~~----~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~  204 (269)
T cd05042         130 NCQLTADL----SVKIGDYGLALEQYPEDYYITKDCHAVPLRWLAPELVEIRGQDLLPKDQTKKSNIWSLGVTMWELFT  204 (269)
T ss_pred             heEecCCC----cEEEeccccccccccchheeccCCCCCcccccCHHHHhhccccccccccchhhHHHHHHHHHHHHHh
Confidence            99998776    69999999986532211       122334555554321110  01111223566666666666665

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina

>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

Probab=99.96  E-value=2.8e-29  Score=205.81  Aligned_cols=192  Identities=25%  Similarity=0.285  Sum_probs=144.3

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccch-HHHHHHHHHHHHhhhCC
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNN-EQLEMVREEIRVSSLFS  103 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~-~~~~~~~~E~~~l~~l~  103 (262)
                      .++|++.+.||.|++|.||+|.+..+++                      .|++|.+..... .....+.+|+.+++.++
T Consensus         4 ~~~y~~~~~lg~g~~~~vy~~~~~~~~~----------------------~~~iK~~~~~~~~~~~~~~~~E~~~l~~l~   61 (291)
T cd07844           4 LETYKKLDKLGEGSYATVYKGRSKLTGQ----------------------LVALKEIRLEHEEGAPFTAIREASLLKDLK   61 (291)
T ss_pred             ccceeEEEEEeecCCeEEEEEEEcCCCc----------------------EEEEEEEecccccCCchhHHHHHHHHhhCC
Confidence            3689999999999999999999876544                      577776644321 11234567999999999


Q ss_pred             CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCee
Q 024842          104 HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYA  183 (262)
Q Consensus       104 h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~iv  183 (262)
                      |+||+++++.+          ......+++|||+.+ +|.+++..   ....+++..++.++.|++.||.|||+.+  ++
T Consensus        62 h~~i~~~~~~~----------~~~~~~~lv~e~~~~-~L~~~~~~---~~~~~~~~~~~~~~~ql~~al~~lH~~~--i~  125 (291)
T cd07844          62 HANIVTLHDII----------HTKKTLTLVFEYLDT-DLKQYMDD---CGGGLSMHNVRLFLFQLLRGLAYCHQRR--VL  125 (291)
T ss_pred             CcceeeEEEEE----------ecCCeEEEEEecCCC-CHHHHHHh---CCCCCCHHHHHHHHHHHHHHHHHHHhCC--ee
Confidence            99999999887          335679999999874 88887652   2346899999999999999999999998  99


Q ss_pred             ecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-----ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheec
Q 024842          184 HNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMREL  258 (262)
Q Consensus       184 H~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l  258 (262)
                      |+||||+||+++.++    .++|+|||++.....+.     ..++..|.+||.+....    ......|+||+|+++++|
T Consensus       126 H~dl~p~nil~~~~~----~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~----~~~~~~Dv~slG~il~~l  197 (291)
T cd07844         126 HRDLKPQNLLISERG----ELKLADFGLARAKSVPSKTYSNEVVTLWYRPPDVLLGST----EYSTSLDMWGVGCIFYEM  197 (291)
T ss_pred             cccCCHHHEEEcCCC----CEEECccccccccCCCCccccccccccccCCcHHhhcCc----ccCcHHHHHHHHHHHHHH
Confidence            999999999998776    69999999987543211     12344556665433211    111236788888888888


Q ss_pred             ccCC
Q 024842          259 MFGR  262 (262)
Q Consensus       259 ~~G~  262 (262)
                      ++|+
T Consensus       198 ~~g~  201 (291)
T cd07844         198 ATGR  201 (291)
T ss_pred             HhCC
Confidence            7774

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the

>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.96  E-value=6.2e-29  Score=202.82  Aligned_cols=198  Identities=21%  Similarity=0.274  Sum_probs=152.8

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchH-HHHHHHHHHHHhhhCC
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNE-QLEMVREEIRVSSLFS  103 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~-~~~~~~~E~~~l~~l~  103 (262)
                      ..+|++.+.||+|+||.||++.....+.                  ..+..+++|.+...... ..+.+.+|+.+++.++
T Consensus         3 ~~~~~~~~~ig~g~~~~v~~~~~~~~~~------------------~~~~~~avK~~~~~~~~~~~~~~~~ei~~l~~l~   64 (284)
T cd05038           3 KRHLKFIKQLGEGHFGKVELCRYDPLGD------------------NTGEQVAVKSLNHSGEEQHRSDFEREIEILRTLD   64 (284)
T ss_pred             hhhchhheeeccCCCeeEEEeeecCCCC------------------CCceEEEEEEeccccchHHHHHHHHHHHHHHhCC
Confidence            4678999999999999999998754321                  13457888887755443 5678899999999999


Q ss_pred             CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCee
Q 024842          104 HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYA  183 (262)
Q Consensus       104 h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~iv  183 (262)
                      |+||+++++++.        .......+++|||+.+++|.+++..   ....+++..++.++.|++.||+|||+.+  ++
T Consensus        65 ~~~i~~~~~~~~--------~~~~~~~~lv~e~~~~~~l~~~l~~---~~~~~~~~~~~~~~~~l~~aL~~lH~~~--i~  131 (284)
T cd05038          65 HENIVKYKGVCE--------KPGGRSLRLIMEYLPSGSLRDYLQR---HRDQINLKRLLLFSSQICKGMDYLGSQR--YI  131 (284)
T ss_pred             CCChheEEeeee--------cCCCCceEEEEecCCCCCHHHHHHh---CccccCHHHHHHHHHHHHHHHHHHHhCC--ee
Confidence            999999988762        1234568999999999999998863   2235899999999999999999999998  99


Q ss_pred             ecCCCCCcEEEecCCCCCCceEEeeccceeeccccCc--------cCcccCCcccchhhhhhhhhhhhhcCcccchheeh
Q 024842          184 HNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKFA--------LGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILM  255 (262)
Q Consensus       184 H~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~~--------~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~  255 (262)
                      |+||||+||+++.++    .++|+|||.+........        .....|.+|+.....     ......|+|++|+++
T Consensus       132 H~dl~p~nil~~~~~----~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~-----~~~~~~Di~slG~~l  202 (284)
T cd05038         132 HRDLAARNILVESED----LVKISDFGLAKVLPEDKDYYYVKEPGESPIFWYAPECLRTS-----KFSSASDVWSFGVTL  202 (284)
T ss_pred             cCCCCHHhEEEcCCC----CEEEcccccccccccCCcceeccCCCCCcccccCcHHHccC-----CCCcccchHHHhhhh
Confidence            999999999998775    699999999987653211        122235555544222     122347899999999


Q ss_pred             eecccCC
Q 024842          256 RELMFGR  262 (262)
Q Consensus       256 ~~l~~G~  262 (262)
                      ++|++|+
T Consensus       203 ~el~tg~  209 (284)
T cd05038         203 YELFTYG  209 (284)
T ss_pred             heeeccC
Confidence            9998874

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut

>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

Probab=99.96  E-value=1.7e-29  Score=207.27  Aligned_cols=189  Identities=17%  Similarity=0.287  Sum_probs=150.2

Q ss_pred             CceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCCCC
Q 024842           26 NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSHR  105 (262)
Q Consensus        26 ~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~h~  105 (262)
                      +.|.....||+|+||.||++.+..+++                      .+++|.+........+.+.+|+..++.++|+
T Consensus        22 ~~~~~~~~lg~g~~g~v~~~~~~~~~~----------------------~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~   79 (292)
T cd06658          22 EYLDSFIKIGEGSTGIVCIATEKHTGK----------------------QVAVKKMDLRKQQRRELLFNEVVIMRDYHHE   79 (292)
T ss_pred             HHHhhhhcccCCCCeEEEEEEECCCCC----------------------EEEEEEEecchHHHHHHHHHHHHHHHhCCCC
Confidence            456667889999999999999876544                      6788877655555567788999999999999


Q ss_pred             CccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeeec
Q 024842          106 NLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHN  185 (262)
Q Consensus       106 ~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~  185 (262)
                      |++++++.+.          ..+..+++|||+.+++|.+++.     ...+++..++.++.|++.||.|||+.+  ++||
T Consensus        80 ~ii~~~~~~~----------~~~~~~lv~e~~~~~~L~~~~~-----~~~l~~~~~~~~~~qi~~~l~~LH~~~--ivH~  142 (292)
T cd06658          80 NVVDMYNSYL----------VGDELWVVMEFLEGGALTDIVT-----HTRMNEEQIATVCLSVLRALSYLHNQG--VIHR  142 (292)
T ss_pred             cHHHHHHhee----------cCCeEEEEEeCCCCCcHHHHHh-----cCCCCHHHHHHHHHHHHHHHHHHHHCC--Eeec
Confidence            9999999873          3567899999999999988764     234899999999999999999999998  9999


Q ss_pred             CCCCCcEEEecCCCCCCceEEeeccceeeccccC-----ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheeccc
Q 024842          186 DVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMF  260 (262)
Q Consensus       186 dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~  260 (262)
                      ||||+||+++.++    .++|+|||++.......     ..++..|.+||.......     ...+|+||+|++++||++
T Consensus       143 dlkp~Nill~~~~----~~kL~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~-----~~~~Dv~slGvil~el~~  213 (292)
T cd06658         143 DIKSDSILLTSDG----RIKLSDFGFCAQVSKEVPKRKSLVGTPYWMAPEVISRLPY-----GTEVDIWSLGIMVIEMID  213 (292)
T ss_pred             CCCHHHEEEcCCC----CEEEccCcchhhcccccccCceeecCccccCHHHHccCCC-----CchhhHHHHHHHHHHHHh
Confidence            9999999998776    69999999987543222     234556777765533221     224788888888888888


Q ss_pred             CC
Q 024842          261 GR  262 (262)
Q Consensus       261 G~  262 (262)
                      |+
T Consensus       214 g~  215 (292)
T cd06658         214 GE  215 (292)
T ss_pred             CC
Confidence            74

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express

>PHA03209 serine/threonine kinase US3; Provisional

Probab=99.96  E-value=4.1e-29  Score=210.55  Aligned_cols=183  Identities=18%  Similarity=0.174  Sum_probs=135.8

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCCC
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSH  104 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~h  104 (262)
                      ..+|++.+.||+|+||.||+|++..+++                      .+++|.....      ....|+.+++.++|
T Consensus        65 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~----------------------~valK~~~~~------~~~~E~~~l~~l~h  116 (357)
T PHA03209         65 SLGYTVIKTLTPGSEGRVFVATKPGQPD----------------------PVVLKIGQKG------TTLIEAMLLQNVNH  116 (357)
T ss_pred             hcCcEEEEEecCCCCeEEEEEEECCCCc----------------------eEEEEeCCcc------ccHHHHHHHHhCCC
Confidence            4579999999999999999999876654                      4566643221      22458899999999


Q ss_pred             CCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeee
Q 024842          105 RNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAH  184 (262)
Q Consensus       105 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH  184 (262)
                      |||+++++.+.          .....+++|+++. ++|.+++..   ....+++..++.++.|++.||.|||+.+  |+|
T Consensus       117 ~~iv~~~~~~~----------~~~~~~lv~e~~~-~~l~~~l~~---~~~~~~~~~~~~i~~qi~~aL~~LH~~~--ivH  180 (357)
T PHA03209        117 PSVIRMKDTLV----------SGAITCMVLPHYS-SDLYTYLTK---RSRPLPIDQALIIEKQILEGLRYLHAQR--IIH  180 (357)
T ss_pred             CCCcChhheEE----------eCCeeEEEEEccC-CcHHHHHHh---ccCCCCHHHHHHHHHHHHHHHHHHHHCC--eec
Confidence            99999999873          3566889999874 577776642   4456899999999999999999999998  999


Q ss_pred             cCCCCCcEEEecCCCCCCceEEeeccceeecccc----CccCcccCCcccchhhhhhhhhhhhhcCcccchheeheeccc
Q 024842          185 NDVKPGNILITCRKGQPPLAILMDFGSARPAQSK----FALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMF  260 (262)
Q Consensus       185 ~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~----~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~  260 (262)
                      |||||+|||++.++    .++|+|||++......    ...++..|.+||.+..-.     .....|+|++|+++|||++
T Consensus       181 rDlkp~Nill~~~~----~~kl~DfG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~-----~~~~~DiwSlGvvl~ell~  251 (357)
T PHA03209        181 RDVKTENIFINDVD----QVCIGDLGAAQFPVVAPAFLGLAGTVETNAPEVLARDK-----YNSKADIWSAGIVLFEMLA  251 (357)
T ss_pred             CCCCHHHEEECCCC----CEEEecCccccccccCcccccccccccccCCeecCCCC-----CCchhhHHHHHHHHHHHHH
Confidence            99999999998766    6999999998743221    123556666666442211     1123455555555555554

>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

Probab=99.96  E-value=2.6e-29  Score=202.03  Aligned_cols=190  Identities=23%  Similarity=0.358  Sum_probs=153.5

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCCC
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSH  104 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~h  104 (262)
                      .++|++.+.||.|++|.||+|.+..+++                      .+++|.+.....  .+.+.+|+.+++.++|
T Consensus         2 ~~~y~~~~~i~~g~~~~v~~~~~~~~~~----------------------~~~~k~~~~~~~--~~~~~~e~~~~~~l~~   57 (256)
T cd06612           2 EEVFDILEKLGEGSYGSVYKAIHKETGQ----------------------VVAIKVVPVEED--LQEIIKEISILKQCDS   57 (256)
T ss_pred             cccchhhhhhcCCCCeEEEEEEEcCCCc----------------------EEEEEEeecHHH--HHHHHHHHHHHHhCCC
Confidence            5789999999999999999999876443                      677777654432  5788999999999999


Q ss_pred             CCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeee
Q 024842          105 RNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAH  184 (262)
Q Consensus       105 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH  184 (262)
                      ||++++++.+.          .....++++|++.+++|.+++..   ....+++..++.++.|++.||.|||+.+  ++|
T Consensus        58 ~~i~~~~~~~~----------~~~~~~l~~e~~~~~~L~~~l~~---~~~~l~~~~~~~~~~~l~~~l~~lh~~~--i~H  122 (256)
T cd06612          58 PYIVKYYGSYF----------KNTDLWIVMEYCGAGSVSDIMKI---TNKTLTEEEIAAILYQTLKGLEYLHSNK--KIH  122 (256)
T ss_pred             CcEeeeeeeee----------cCCcEEEEEecCCCCcHHHHHHh---CccCCCHHHHHHHHHHHHHHHHHHHHCC--ccc
Confidence            99999999873          35778999999999999998752   3456899999999999999999999988  999


Q ss_pred             cCCCCCcEEEecCCCCCCceEEeeccceeeccccC-----ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecc
Q 024842          185 NDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELM  259 (262)
Q Consensus       185 ~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~  259 (262)
                      +||+|+||+++.++    .++|+|||++.......     ..++..|.+||.+....     ....+|+|++|+++++|+
T Consensus       123 ~dl~~~ni~~~~~~----~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~-----~~~~~Di~s~G~il~~l~  193 (256)
T cd06612         123 RDIKAGNILLNEEG----QAKLADFGVSGQLTDTMAKRNTVIGTPFWMAPEVIQEIG-----YNNKADIWSLGITAIEMA  193 (256)
T ss_pred             CCCCcceEEECCCC----cEEEcccccchhcccCccccccccCCccccCHHHHhcCC-----CCchhhHHHHHHHHHHHH
Confidence            99999999998776    69999999988765432     23556677777554332     122468888888888888


Q ss_pred             cCC
Q 024842          260 FGR  262 (262)
Q Consensus       260 ~G~  262 (262)
                      +|+
T Consensus       194 ~g~  196 (256)
T cd06612         194 EGK  196 (256)
T ss_pred             hCC
Confidence            874

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a

>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

Probab=99.96  E-value=1.5e-28  Score=199.30  Aligned_cols=155  Identities=19%  Similarity=0.289  Sum_probs=129.3

Q ss_pred             cCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc-chHHHHHHHHHHHHhhhC
Q 024842           24 NENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ-NNEQLEMVREEIRVSSLF  102 (262)
Q Consensus        24 ~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~-~~~~~~~~~~E~~~l~~l  102 (262)
                      +..+|++.+.||+|+||.||+|.+..+++.                   ...+++|..... .....+.+..|+.+++.+
T Consensus         2 ~~~~~~~~~~lg~g~~g~vy~~~~~~~~~~-------------------~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l   62 (269)
T cd05065           2 DVSCVKIEEVIGAGEFGEVCRGRLKLPGKR-------------------EIFVAIKTLKSGYTEKQRRDFLSEASIMGQF   62 (269)
T ss_pred             ChHHeEEEeEecCCCCCeEEEEEEecCCCC-------------------ceeEEEEEcCCCCCHHHHHHHHHHHHHHHhC
Confidence            346799999999999999999998765441                   235788877654 344567899999999999


Q ss_pred             CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCe
Q 024842          103 SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPY  182 (262)
Q Consensus       103 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~i  182 (262)
                      +||||+++++.+          ......+++|||+.+++|.+++..   ....+++.+++.++.|++.||.|||+++  +
T Consensus        63 ~h~ni~~~~~~~----------~~~~~~~lv~e~~~~~~L~~~l~~---~~~~~~~~~~~~i~~~l~~al~~lH~~g--~  127 (269)
T cd05065          63 DHPNIIHLEGVV----------TKSRPVMIITEFMENGALDSFLRQ---NDGQFTVIQLVGMLRGIAAGMKYLSEMN--Y  127 (269)
T ss_pred             CCcCcceEEEEE----------CCCCceEEEEecCCCCcHHHHHhh---CCCCCCHHHHHHHHHHHHHHHHHHHHCC--E
Confidence            999999999887          335668999999999999988753   2345899999999999999999999998  9


Q ss_pred             eecCCCCCcEEEecCCCCCCceEEeeccceeecc
Q 024842          183 AHNDVKPGNILITCRKGQPPLAILMDFGSARPAQ  216 (262)
Q Consensus       183 vH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~  216 (262)
                      +|+||||+||+++.++    .++|+|||++....
T Consensus       128 ~H~dl~p~nili~~~~----~~kl~dfg~~~~~~  157 (269)
T cd05065         128 VHRDLAARNILVNSNL----VCKVSDFGLSRFLE  157 (269)
T ss_pred             eecccChheEEEcCCC----cEEECCCccccccc
Confidence            9999999999997665    69999999987543

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr

>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

Probab=99.96  E-value=5.8e-29  Score=204.46  Aligned_cols=171  Identities=21%  Similarity=0.236  Sum_probs=131.0

Q ss_pred             cCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc-chHHHHHHHHHHHHhhhC
Q 024842           24 NENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ-NNEQLEMVREEIRVSSLF  102 (262)
Q Consensus        24 ~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~-~~~~~~~~~~E~~~l~~l  102 (262)
                      ..++|++.+.||+|+||.||++++....+...  ..+...    ....+...+++|..... .....+.+.+|+.+++.+
T Consensus         3 ~~~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~--~~~~~~----~~~~~~~~~a~K~~~~~~~~~~~~~~~~E~~~l~~l   76 (296)
T cd05095           3 PRKRLTFKEKLGEGQFGEVHLCEAEGMEKFMD--KDFSLD----VSGNQPVLVAVKMLREDANKNARNDFLKEIKIMSRL   76 (296)
T ss_pred             ChhhceeeeeccCCCCCeEEeccccccccccc--cccccc----CCCCceeEEEEEeccccCCHHHHHHHHHHHHHHHhC
Confidence            45789999999999999999998654332211  111110    11122346888887654 334456788999999999


Q ss_pred             CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhc-------CCCCCHHHHHHHHHHHHHHHHHH
Q 024842          103 SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTK-------KEFFSTSDVLQIFYQICAGLKHM  175 (262)
Q Consensus       103 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~-------~~~~~~~~~~~i~~ql~~~l~~l  175 (262)
                      +|+||+++++.+.          ..+..+++||++.+++|.+++......       ...+++.+++.++.|++.||+||
T Consensus        77 ~~~~i~~~~~~~~----------~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~l  146 (296)
T cd05095          77 KDPNIIRLLAVCI----------TSDPLCMITEYMENGDLNQFLSRHEPQEAAEKADVVTISYSTLIFMATQIASGMKYL  146 (296)
T ss_pred             CCCCcceEEEEEe----------cCCccEEEEEeCCCCcHHHHHHhcCcccccccccccccCHHHHHHHHHHHHHHHHHH
Confidence            9999999999873          355689999999999999988643211       12377889999999999999999


Q ss_pred             HcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeecc
Q 024842          176 HSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQ  216 (262)
Q Consensus       176 H~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~  216 (262)
                      |+.+  ++|+||||+||+++.++    .++|+|||++....
T Consensus       147 H~~~--i~H~dlkp~Nili~~~~----~~~l~dfg~~~~~~  181 (296)
T cd05095         147 SSLN--FVHRDLATRNCLVGKNY----TIKIADFGMSRNLY  181 (296)
T ss_pred             HHCC--eecccCChheEEEcCCC----CEEeccCccccccc
Confidence            9998  99999999999998765    69999999987643

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit

>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

Probab=99.96  E-value=6.3e-29  Score=205.12  Aligned_cols=190  Identities=21%  Similarity=0.275  Sum_probs=145.1

Q ss_pred             CceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc---hHHHHHHHHHHHHhhhC
Q 024842           26 NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN---NEQLEMVREEIRVSSLF  102 (262)
Q Consensus        26 ~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~---~~~~~~~~~E~~~l~~l  102 (262)
                      ++|++.+.||+|+||.||++.+..+++                      .+++|.+....   ....+.+..|+.+++.+
T Consensus         1 ~~y~~~~~l~~g~~~~v~~~~~~~~~~----------------------~v~ik~~~~~~~~~~~~~~~~~~e~~~l~~~   58 (305)
T cd05609           1 EDFETIKLISNGAYGAVYLVRHKETRQ----------------------RFAMKKINKQNLILRNQIQQVFVERDILTFA   58 (305)
T ss_pred             CCceEeeEeecCCCeeEEEEEECCCCc----------------------EEEEEEeehhhhhhHHHHHHHHHHHHHHHhC
Confidence            479999999999999999999876654                      57777654432   23345677899999999


Q ss_pred             CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCe
Q 024842          103 SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPY  182 (262)
Q Consensus       103 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~i  182 (262)
                      +||||+++++.+          ......+++||++.+++|.+++.    ....+++..++.++.|++.||.|||+.+  +
T Consensus        59 ~~~~i~~~~~~~----------~~~~~~~lv~e~~~g~~L~~~l~----~~~~~~~~~~~~~~~~i~~~l~~lH~~~--i  122 (305)
T cd05609          59 ENPFVVSMFCSF----------ETKRHLCMVMEYVEGGDCATLLK----NIGALPVDMARMYFAETVLALEYLHNYG--I  122 (305)
T ss_pred             CCCCeeeeEEEE----------ecCCEEEEEEecCCCCcHHHHHH----HcCCCCHHHHHHHHHHHHHHHHHHHHCC--c
Confidence            999999999877          34667899999999999999886    3456899999999999999999999988  9


Q ss_pred             eecCCCCCcEEEecCCCCCCceEEeeccceeecccc--------------------CccCcccCCcccchhhhhhhhhhh
Q 024842          183 AHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSK--------------------FALGQRRYSCRNGLLSIVLHLSEL  242 (262)
Q Consensus       183 vH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~--------------------~~~~~~~~~~~~d~~s~g~~~~e~  242 (262)
                      +|+||||+||+++.++    .++|+|||++......                    ...++..|.+||.+..-+     .
T Consensus       123 ~H~dl~p~NIll~~~~----~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-----~  193 (305)
T cd05609         123 VHRDLKPDNLLITSMG----HIKLTDFGLSKIGLMSLTTNLYEGHIEKDTREFLDKQVCGTPEYIAPEVILRQG-----Y  193 (305)
T ss_pred             cccCCchHHEEECCCC----CEEEeeCCCccccCcCccccccccccccchhhccccCCccCccccCchhccCCC-----C
Confidence            9999999999998766    6999999988631100                    012334455565432211     1


Q ss_pred             hhcCcccchheeheecccCC
Q 024842          243 LSCGTVRVIQILMRELMFGR  262 (262)
Q Consensus       243 ~~~~~v~~~g~~~~~l~~G~  262 (262)
                      ....|+|++|+++++|++|+
T Consensus       194 ~~~~Di~slG~vl~el~~g~  213 (305)
T cd05609         194 GKPVDWWAMGIILYEFLVGC  213 (305)
T ss_pred             CchhhHHHHHHHHHHHHhCC
Confidence            12357777777777777663

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a

>cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.96  E-value=3.8e-29  Score=203.38  Aligned_cols=183  Identities=15%  Similarity=0.111  Sum_probs=131.4

Q ss_pred             EeecccceEEEEEEecccccccccccc--cccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCCCCCccch
Q 024842           33 QLGEGGFAYVYLVKETVTTDASAASGG--LANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSHRNLLPL  110 (262)
Q Consensus        33 ~ig~G~~g~V~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~  110 (262)
                      +||+|+||.||+|....++...+.+..  ................+++|.+..........+.+|+.+++.++||||+++
T Consensus         2 ~lG~G~~~~vy~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~~~~~~~l~h~niv~~   81 (274)
T cd05076           2 HLGQGTRTNIYDGRLRVEGGGEPEEDEMEDEDPLVEGNNNGRELRVVLKVLDPSHRDIALAFFETASLMSQVSHIHLAFV   81 (274)
T ss_pred             CcCcccccceecceeEeccCCCCcccccccccccccccCCCeeeeEEEEecChHHHHHHHHHHHHHHHHhcCCCCCeeeE
Confidence            699999999999987654433222211  111111222233345688888766555556678889999999999999999


Q ss_pred             hhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeeecCCCCC
Q 024842          111 LDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPG  190 (262)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~dikp~  190 (262)
                      ++++.          .....+++|||+.+++|..++..   ....+++..+..++.|++.||+|||+++  ++||||||+
T Consensus        82 ~~~~~----------~~~~~~lv~ey~~~g~L~~~l~~---~~~~~~~~~~~~i~~qi~~~l~~lH~~~--iiH~dlkp~  146 (274)
T cd05076          82 HGVCV----------RGSENIMVEEFVEHGPLDVCLRK---EKGRVPVAWKITVAQQLASALSYLEDKN--LVHGNVCAK  146 (274)
T ss_pred             EEEEE----------eCCceEEEEecCCCCcHHHHHHh---cCCCCCHHHHHHHHHHHHHHHHHHHcCC--ccCCCCCcc
Confidence            99873          35678999999999999887752   2445899999999999999999999988  999999999


Q ss_pred             cEEEecCCC---CCCceEEeeccceeecccc-CccCcccCCccc
Q 024842          191 NILITCRKG---QPPLAILMDFGSARPAQSK-FALGQRRYSCRN  230 (262)
Q Consensus       191 Nill~~~~~---~~~~~kl~Dfg~a~~~~~~-~~~~~~~~~~~~  230 (262)
                      ||+++..+.   ..+.++++|||++...... ...++..|.+|+
T Consensus       147 Nill~~~~~~~~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~aPe  190 (274)
T cd05076         147 NILLARLGLAEGTSPFIKLSDPGVSFTALSREERVERIPWIAPE  190 (274)
T ss_pred             cEEEeccCcccCccceeeecCCccccccccccccccCCcccCch
Confidence            999976432   2235899999987643221 122334454444

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt

>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

Probab=99.96  E-value=3e-29  Score=203.03  Aligned_cols=189  Identities=19%  Similarity=0.271  Sum_probs=144.6

Q ss_pred             ceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc---------hHHHHHHHHHHH
Q 024842           27 RYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN---------NEQLEMVREEIR   97 (262)
Q Consensus        27 ~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~---------~~~~~~~~~E~~   97 (262)
                      +|.+.+.||+|++|.||+|.+..+++                      .+++|.+....         ....+.+.+|+.
T Consensus         1 ~~~~~~~ig~g~~~~v~~a~~~~~~~----------------------~~~~k~~~~~~~~~~~~~~~~~~~~~~~~e~~   58 (267)
T cd06628           1 KWIKGALIGSGSFGSVYLGMNASSGE----------------------LMAVKQVELPSVSASSKDRKRSMLDALAREIA   58 (267)
T ss_pred             CccccceeecCCCeEEEEEEecCCCc----------------------EEEEEEecCCCcccchhHHHHHHHHHHHHHHH
Confidence            47788999999999999999876544                      56666553321         122356888999


Q ss_pred             HhhhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHc
Q 024842           98 VSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHS  177 (262)
Q Consensus        98 ~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~  177 (262)
                      +++.++||||+++++.+          ......+++|||+.+++|.+++.    ....+++..++.++.|++.||+|||+
T Consensus        59 ~l~~l~h~~i~~~~~~~----------~~~~~~~lv~e~~~~~~L~~~l~----~~~~l~~~~~~~~~~~l~~~l~~lH~  124 (267)
T cd06628          59 LLKELQHENIVQYLGSS----------LDADHLNIFLEYVPGGSVAALLN----NYGAFEETLVRNFVRQILKGLNYLHN  124 (267)
T ss_pred             HHHhcCCCCeeeEEEEE----------EeCCccEEEEEecCCCCHHHHHH----hccCccHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999887          33567899999999999999886    34558999999999999999999999


Q ss_pred             CCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-----------ccCcccCCcccchhhhhhhhhhhhhcC
Q 024842          178 LEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-----------ALGQRRYSCRNGLLSIVLHLSELLSCG  246 (262)
Q Consensus       178 ~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-----------~~~~~~~~~~~d~~s~g~~~~e~~~~~  246 (262)
                      ++  ++|+||+|+||+++.++    .++|+|||.+.......           ..++..|.+||.+....     .....
T Consensus       125 ~~--ivH~di~p~nil~~~~~----~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~-----~~~~~  193 (267)
T cd06628         125 RG--IIHRDIKGANILVDNKG----GIKISDFGISKKLEANSLSTKTNGARPSLQGSVFWMAPEVVKQTS-----YTRKA  193 (267)
T ss_pred             cC--cccccCCHHHEEEcCCC----CEEecccCCCcccccccccCCccccccccCCCcCccChhHhccCC-----CCchh
Confidence            98  99999999999998766    69999999988665321           12344566665432211     11236


Q ss_pred             cccchheeheecccCC
Q 024842          247 TVRVIQILMRELMFGR  262 (262)
Q Consensus       247 ~v~~~g~~~~~l~~G~  262 (262)
                      |+|++|+++++|++|+
T Consensus       194 Dv~slG~il~~l~~g~  209 (267)
T cd06628         194 DIWSLGCLVVEMLTGK  209 (267)
T ss_pred             hhHHHHHHHHHHhhCC
Confidence            7777777777777764

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate

>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

Probab=99.96  E-value=6.9e-29  Score=204.79  Aligned_cols=205  Identities=20%  Similarity=0.292  Sum_probs=149.3

Q ss_pred             ceeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc-chHHHHHHHHHHHH
Q 024842           20 DVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ-NNEQLEMVREEIRV   98 (262)
Q Consensus        20 ~~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~-~~~~~~~~~~E~~~   98 (262)
                      ...+..++|.+.+.||+|+||.||+|++....+..               ......+++|..... .....+.+..|+.+
T Consensus         9 ~~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~---------------~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~   73 (304)
T cd05101           9 RWEFSRDKLTLGKPLGEGCFGQVVMAEALGIDKDK---------------PKEAVTVAVKMLKDDATEKDLSDLVSEMEM   73 (304)
T ss_pred             cccccHHHeeecceeeccCCceEEEEEEeccCCCC---------------CCcceeEEeeecccccchHHHHHHHHHHHH
Confidence            34566889999999999999999999864322100               012336788877643 23445678899999


Q ss_pred             hhhC-CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhh------------cCCCCCHHHHHHHH
Q 024842           99 SSLF-SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQT------------KKEFFSTSDVLQIF  165 (262)
Q Consensus        99 l~~l-~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~------------~~~~~~~~~~~~i~  165 (262)
                      ++.+ +||||+++++.+          ......+++|||+.+++|.+++.....            ....++...+..++
T Consensus        74 l~~l~~h~~i~~~~~~~----------~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (304)
T cd05101          74 MKMIGKHKNIINLLGAC----------TQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDIARVPDEQMTFKDLVSCT  143 (304)
T ss_pred             HHhhccCCCchheeEEE----------ecCCceEEEEecCCCCcHHHHHHhcCCcccccccccccCCcccccHHHHHHHH
Confidence            9999 799999999887          335678999999999999998864321            12347888999999


Q ss_pred             HHHHHHHHHHHcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-------ccCcccCCcccchhhhhhh
Q 024842          166 YQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-------ALGQRRYSCRNGLLSIVLH  238 (262)
Q Consensus       166 ~ql~~~l~~lH~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-------~~~~~~~~~~~d~~s~g~~  238 (262)
                      .|++.||.|||+++  ++|+||||+||+++.++    .++|+|||++.......       ..++..|.+||.+..-.+ 
T Consensus       144 ~qi~~al~~LH~~g--ivH~dlkp~Nili~~~~----~~kl~D~g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~-  216 (304)
T cd05101         144 YQVARGMEYLASQK--CIHRDLAARNVLVTENN----VMKIADFGLARDVNNIDYYKKTTNGRLPVKWMAPEALFDRVY-  216 (304)
T ss_pred             HHHHHHHHHHHHCC--eeecccccceEEEcCCC----cEEECCCccceecccccccccccCCCCCceeeCchhhccCCC-
Confidence            99999999999998  99999999999998766    69999999998654321       112234666654432211 


Q ss_pred             hhhhhhcCcccchheeheeccc
Q 024842          239 LSELLSCGTVRVIQILMRELMF  260 (262)
Q Consensus       239 ~~e~~~~~~v~~~g~~~~~l~~  260 (262)
                          ....|+|++|+++|+|++
T Consensus       217 ----~~~~Di~slG~~l~el~~  234 (304)
T cd05101         217 ----THQSDVWSFGVLMWEIFT  234 (304)
T ss_pred             ----CchhhHHHHHHHHHHHHc
Confidence                123566666666666655

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

Probab=99.96  E-value=9.7e-30  Score=206.45  Aligned_cols=203  Identities=19%  Similarity=0.255  Sum_probs=150.5

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhC-C
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLF-S  103 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l-~  103 (262)
                      .+.|++.+.||+|+||.||+|.+..+++                      .+++|....... ....+..|+.+++.+ +
T Consensus         5 ~~~y~~~~~lg~g~~g~vy~~~~~~~~~----------------------~~aik~~~~~~~-~~~~~~~e~~~l~~~~~   61 (272)
T cd06637           5 AGIFELVELVGNGTYGQVYKGRHVKTGQ----------------------LAAIKVMDVTGD-EEEEIKQEINMLKKYSH   61 (272)
T ss_pred             hhhhhHHHheeecCCeEEEEEEEcCCCc----------------------EEEEEEEEcCCc-cHHHHHHHHHHHHHhcC
Confidence            4678999999999999999999876654                      577776654432 235677889998888 6


Q ss_pred             CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCee
Q 024842          104 HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYA  183 (262)
Q Consensus       104 h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~iv  183 (262)
                      |+|++++++.+...    .........+++||++.+++|.+++...  ....+++..++.++.|++.||.|||+.+  ++
T Consensus        62 h~~i~~~~~~~~~~----~~~~~~~~~~iv~e~~~~~~L~~~l~~~--~~~~l~~~~~~~~~~qi~~~l~~LH~~~--iv  133 (272)
T cd06637          62 HRNIATYYGAFIKK----NPPGMDDQLWLVMEFCGAGSVTDLIKNT--KGNTLKEEWIAYICREILRGLSHLHQHK--VI  133 (272)
T ss_pred             CCCeeeEeeEEeec----CCCCCCcEEEEEEEcCCCCcHHHHHHhc--cCCCCCHHHHHHHHHHHHHHHHHHHHCC--Cc
Confidence            99999999987421    0011235689999999999999987632  2345899999999999999999999988  99


Q ss_pred             ecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-----ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheec
Q 024842          184 HNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMREL  258 (262)
Q Consensus       184 H~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l  258 (262)
                      |+||+|+||+++.++    .++|+|||++.......     ..++..|.+||.+.+............|+|++|+++|+|
T Consensus       134 h~dl~~~nili~~~~----~~~l~Dfg~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGv~l~el  209 (272)
T cd06637         134 HRDIKGQNVLLTENA----EVKLVDFGVSAQLDRTVGRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEM  209 (272)
T ss_pred             cCCCCHHHEEECCCC----CEEEccCCCceecccccccCCcccccccccCHhHhccccCcCCCCCchhhHHHHHHHHHHH
Confidence            999999999998766    69999999987654321     234556666665432111111112247888888888888


Q ss_pred             ccCC
Q 024842          259 MFGR  262 (262)
Q Consensus       259 ~~G~  262 (262)
                      ++|+
T Consensus       210 ~~g~  213 (272)
T cd06637         210 AEGA  213 (272)
T ss_pred             HhCC
Confidence            8874

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ

>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

Probab=99.96  E-value=5.9e-29  Score=202.78  Aligned_cols=201  Identities=20%  Similarity=0.225  Sum_probs=147.7

Q ss_pred             eecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc-chHHHHHHHHHHHHhh
Q 024842           22 WINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ-NNEQLEMVREEIRVSS  100 (262)
Q Consensus        22 ~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~-~~~~~~~~~~E~~~l~  100 (262)
                      .++.++|++.+.||+|+||.||+|.+..++.                  .....+++|++... .....+.+.+|+.+++
T Consensus         2 ~~~~~~~~~~~~i~~g~~g~V~~~~~~~~~~------------------~~~~~v~~k~~~~~~~~~~~~~~~~e~~~l~   63 (280)
T cd05043           2 AISRDRVTLSDLLQEGTFGRIFYGILIDEKP------------------GKEEEVFVKTVKDHASEIQVTLLLQESCLLY   63 (280)
T ss_pred             ccchhheEEeeeecccCCceEEEEEEecCCC------------------CceeEEEEEEccCCCCHHHHHHHHHHHHHHH
Confidence            3568899999999999999999999875321                  01346777766543 3444577889999999


Q ss_pred             hCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhc----CCCCCHHHHHHHHHHHHHHHHHHH
Q 024842          101 LFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTK----KEFFSTSDVLQIFYQICAGLKHMH  176 (262)
Q Consensus       101 ~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~----~~~~~~~~~~~i~~ql~~~l~~lH  176 (262)
                      .++|||++++++.+.         ......+++++++.+++|.+++......    ...+++..++.++.|++.||+|||
T Consensus        64 ~l~h~ni~~~~~~~~---------~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH  134 (280)
T cd05043          64 GLSHQNILPILHVCI---------EDGEPPFVLYPYMNWGNLKLFLQQCRLGEANNPQALSTQQLVHMAIQIACGMSYLH  134 (280)
T ss_pred             hCCCCCCCeEEEEEe---------cCCCCCEEEEEcCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHH
Confidence            999999999998763         2245688999999999999988643322    145899999999999999999999


Q ss_pred             cCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-------ccCcccCCcccchhhhhhhhhhhhhcCccc
Q 024842          177 SLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-------ALGQRRYSCRNGLLSIVLHLSELLSCGTVR  249 (262)
Q Consensus       177 ~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-------~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~  249 (262)
                      +.+  ++|+||||+||+++.++    .++|+|||+++.+....       ..++..|.+||......     ....+|+|
T Consensus       135 ~~~--i~H~di~p~nil~~~~~----~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~-----~~~~~Di~  203 (280)
T cd05043         135 KRG--VIHKDIAARNCVIDEEL----QVKITDNALSRDLFPMDYHCLGDNENRPVKWMALESLVNKE-----YSSASDVW  203 (280)
T ss_pred             HCC--EeecccCHhhEEEcCCC----cEEECCCCCcccccCCceEEeCCCCCcchhccCHHHHhcCC-----CCchhhHH
Confidence            988  99999999999998766    79999999997653221       12223355555332111     11235666


Q ss_pred             chheeheeccc
Q 024842          250 VIQILMRELMF  260 (262)
Q Consensus       250 ~~g~~~~~l~~  260 (262)
                      |+|++++++++
T Consensus       204 slG~~l~el~~  214 (280)
T cd05043         204 SFGVLLWELMT  214 (280)
T ss_pred             HhHHHHHHHhc
Confidence            66666666655

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It

>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

Probab=99.96  E-value=3.1e-29  Score=206.00  Aligned_cols=208  Identities=20%  Similarity=0.247  Sum_probs=146.1

Q ss_pred             cCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc-chHHHHHHHHHHHHhhhC
Q 024842           24 NENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ-NNEQLEMVREEIRVSSLF  102 (262)
Q Consensus        24 ~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~-~~~~~~~~~~E~~~l~~l  102 (262)
                      ..++|++.+.||+|+||.||+|++..+++....        ...........+++|..... .....+.+.+|+++++.+
T Consensus         3 ~~~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~--------~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~ei~~l~~l   74 (295)
T cd05097           3 PRQQLRLKEKLGEGQFGEVHLCEAEGLAEFLGE--------GAPEFDGQPVLVAVKMLRADVTKTARNDFLKEIKIMSRL   74 (295)
T ss_pred             chHhCeehhccCCCCCceEEecccccchhhccc--------cCcccCCCceEEEEEecCCCCCHHHHHHHHHHHHHHHhC
Confidence            457899999999999999999988654321100        00000112235788877654 333456788999999999


Q ss_pred             CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhh--------cCCCCCHHHHHHHHHHHHHHHHH
Q 024842          103 SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQT--------KKEFFSTSDVLQIFYQICAGLKH  174 (262)
Q Consensus       103 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~--------~~~~~~~~~~~~i~~ql~~~l~~  174 (262)
                      +|+|++++++.+.          .....+++|||+.+++|.+++.....        ....+++..++.++.|++.||.|
T Consensus        75 ~h~~i~~~~~~~~----------~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~  144 (295)
T cd05097          75 KNPNIIRLLGVCV----------SDDPLCMITEYMENGDLNQFLSQREIESTFTHANNIPSVSIANLLYMAVQIASGMKY  144 (295)
T ss_pred             CCCCcCeEEEEEc----------CCCccEEEEecCCCCcHHHHHHhccccccccccccCCcccHHHHHHHHHHHHHHHHH
Confidence            9999999999873          35678999999999999998853221        01236888999999999999999


Q ss_pred             HHcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-------ccCcccCCcccchhhhhhhhhhhhhcCc
Q 024842          175 MHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-------ALGQRRYSCRNGLLSIVLHLSELLSCGT  247 (262)
Q Consensus       175 lH~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-------~~~~~~~~~~~d~~s~g~~~~e~~~~~~  247 (262)
                      ||+.+  ++|+||||+||+++.++    .+||+|||++.......       ..++..|.+||.+..-     ......|
T Consensus       145 lH~~~--i~H~dlkp~Nill~~~~----~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-----~~~~~~D  213 (295)
T cd05097         145 LASLN--FVHRDLATRNCLVGNHY----TIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMAWESILLG-----KFTTASD  213 (295)
T ss_pred             HHhcC--eeccccChhhEEEcCCC----cEEecccccccccccCcceeccCcCcCceeecChhhhccC-----CcCchhh
Confidence            99998  99999999999998765    69999999987543221       1123345555533211     1122356


Q ss_pred             ccchheeheeccc
Q 024842          248 VRVIQILMRELMF  260 (262)
Q Consensus       248 v~~~g~~~~~l~~  260 (262)
                      +||+|+++++|++
T Consensus       214 vwSlG~~l~el~~  226 (295)
T cd05097         214 VWAFGVTLWEMFT  226 (295)
T ss_pred             HHHHHHHHHHHHH
Confidence            6666666666554

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including

>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

Probab=99.96  E-value=9.3e-29  Score=200.34  Aligned_cols=197  Identities=19%  Similarity=0.241  Sum_probs=148.5

Q ss_pred             ecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhC
Q 024842           23 INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLF  102 (262)
Q Consensus        23 ~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l  102 (262)
                      .+.++......||+|+||.||+|.+..++.                      .+++|..........+.+.+|+.+++.+
T Consensus         5 ~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~----------------------~v~~k~~~~~~~~~~~~~~~e~~~l~~l   62 (268)
T cd06624           5 YEYDENGERVVLGKGTYGIVYAARDLSTQV----------------------RIAIKEIPERDSRYVQPLHEEIALHSYL   62 (268)
T ss_pred             cccccCCceEEEecCCceEEEEeEecCCCc----------------------EEEEEEecCCCHHHHHHHHHHHHHHHhc
Confidence            334455556789999999999999876543                      6788877666666667889999999999


Q ss_pred             CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCC--CHHHHHHHHHHHHHHHHHHHcCCC
Q 024842          103 SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFF--STSDVLQIFYQICAGLKHMHSLEP  180 (262)
Q Consensus       103 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~--~~~~~~~i~~ql~~~l~~lH~~~~  180 (262)
                      +|+||+++++.+.          ..+..++++|++.+++|.+++...   ..++  ++..+..++.|++.||.|||+.+ 
T Consensus        63 ~h~~iv~~~~~~~----------~~~~~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~~~~~~~qi~~al~~lH~~~-  128 (268)
T cd06624          63 KHRNIVQYLGSDS----------ENGFFKIFMEQVPGGSLSALLRSK---WGPLKDNEQTIIFYTKQILEGLKYLHDNQ-  128 (268)
T ss_pred             CCCCeeeeeeeec----------cCCEEEEEEecCCCCCHHHHHHHh---cccCCCcHHHHHHHHHHHHHHHHHHHHCC-
Confidence            9999999998873          356789999999999999988632   2334  88889999999999999999988 


Q ss_pred             CeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-----ccCcccCCcccchhhhhhhhhhhhhcCcccchheeh
Q 024842          181 PYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILM  255 (262)
Q Consensus       181 ~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~  255 (262)
                       ++|+||||+||+++.+..   .++|+|||++.......     ..++..|.+||.+.....   ......|+|++|+++
T Consensus       129 -i~h~dl~p~nil~~~~~~---~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~---~~~~~~Dv~slGvvl  201 (268)
T cd06624         129 -IVHRDIKGDNVLVNTYSG---VVKISDFGTSKRLAGINPCTETFTGTLQYMAPEVIDKGPR---GYGAPADIWSLGCTI  201 (268)
T ss_pred             -EeecCCCHHHEEEcCCCC---eEEEecchhheecccCCCccccCCCCccccChhhhccccc---cCCchhhhHHHHHHH
Confidence             999999999999975332   69999999987653211     234556666665422110   011246777777777


Q ss_pred             eecccCC
Q 024842          256 RELMFGR  262 (262)
Q Consensus       256 ~~l~~G~  262 (262)
                      ++|++|+
T Consensus       202 ~~l~~g~  208 (268)
T cd06624         202 VEMATGK  208 (268)
T ss_pred             HHHHhCC
Confidence            7777764

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina

>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

Probab=99.96  E-value=5.7e-29  Score=207.92  Aligned_cols=195  Identities=23%  Similarity=0.329  Sum_probs=148.8

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc--chHHHHHHHHHHHHhhhC
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ--NNEQLEMVREEIRVSSLF  102 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~--~~~~~~~~~~E~~~l~~l  102 (262)
                      +++|++.+.||+|++|.||+|.+..+++                      .|++|++...  .....+.+.+|+.+++.+
T Consensus         4 ~~~y~~~~~lg~g~~g~v~~~~~~~~~~----------------------~valK~~~~~~~~~~~~~~~~~e~~~l~~l   61 (334)
T cd07855           4 GSRYKPIENIGSGAYGVVCSAIDTRSGK----------------------KVAIKKIPHAFDVPTLAKRTLRELKILRHF   61 (334)
T ss_pred             hhceeeeeeeecCCCeEEEEEEEcCCCC----------------------EEEEEEeccccccccchHHHHHHHHHHHhc
Confidence            4789999999999999999999887655                      5677765543  223346677899999999


Q ss_pred             CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCe
Q 024842          103 SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPY  182 (262)
Q Consensus       103 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~i  182 (262)
                      +||||+++++.+..      ........+++|+|+. ++|.+++.    ....+++..++.++.|++.||.|||+.+  +
T Consensus        62 ~h~~iv~~~~~~~~------~~~~~~~~~lv~e~~~-~~l~~~~~----~~~~~~~~~~~~i~~qi~~aL~~LH~~~--i  128 (334)
T cd07855          62 KHDNIIAIRDILRP------PGADFKDVYVVMDLME-SDLHHIIH----SDQPLTEEHIRYFLYQLLRGLKYIHSAN--V  128 (334)
T ss_pred             CCCCccCHHHhccc------cCCCCceEEEEEehhh-hhHHHHhc----cCCCCCHHHHHHHHHHHHHHHHHHHHCC--e
Confidence            99999999987742      1123456899999885 57877765    4555999999999999999999999988  9


Q ss_pred             eecCCCCCcEEEecCCCCCCceEEeeccceeeccccC---------ccCcccCCcccchhhhhhhhhhhhhcCcccchhe
Q 024842          183 AHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF---------ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQI  253 (262)
Q Consensus       183 vH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~---------~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~  253 (262)
                      +|+||||+||+++.++    .++|+|||++.......         ..++..|.+||.+.+..    ..-...|+|++|+
T Consensus       129 vH~dlkp~Nil~~~~~----~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~----~~~~~~Di~slG~  200 (334)
T cd07855         129 IHRDLKPSNLLVNEDC----ELRIGDFGMARGLSSSPTEHKYFMTEYVATRWYRAPELLLSLP----EYTTAIDMWSVGC  200 (334)
T ss_pred             ecCCCCHHHEEEcCCC----cEEecccccceeecccCcCCCcccccccccccccChHHhcCCc----ccccccchHHHHH
Confidence            9999999999998776    69999999997654321         13444566666543321    1223478888888


Q ss_pred             eheecccCC
Q 024842          254 LMRELMFGR  262 (262)
Q Consensus       254 ~~~~l~~G~  262 (262)
                      ++|+|++|+
T Consensus       201 ~l~el~~g~  209 (334)
T cd07855         201 IFAEMLGRR  209 (334)
T ss_pred             HHHHHHcCC
Confidence            888887774

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the

>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=2.4e-29  Score=212.85  Aligned_cols=195  Identities=19%  Similarity=0.291  Sum_probs=161.5

Q ss_pred             eeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc---hHHHHHHHHHHH
Q 024842           21 VWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN---NEQLEMVREEIR   97 (262)
Q Consensus        21 ~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~---~~~~~~~~~E~~   97 (262)
                      .-++..-|..++.||-|.||+|.+++...+..                      .||.|.+...+   .......+.|-.
T Consensus       624 aKMdKSmFvkik~iGvGAFGeV~Lv~KvDT~~----------------------lYAmKTLrKaDVl~rnQvaHVKAERD  681 (1034)
T KOG0608|consen  624 AKMDKSMFVKIKTIGVGAFGEVCLVRKVDTRA----------------------LYAMKTLRKADVLMRNQVAHVKAERD  681 (1034)
T ss_pred             hhccccceEEEeeecccccceeEEEeecchhh----------------------HHHHhhhHHHHHHhhhhhhhhhhhhh
Confidence            34667778999999999999999999877643                      78888776553   233445677889


Q ss_pred             HhhhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHc
Q 024842           98 VSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHS  177 (262)
Q Consensus        98 ~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~  177 (262)
                      +|...+++=|+++|-.|          .+.+.+|+||+|.+||++..++-    +.+.|+|+.+..++..|..|+++.|.
T Consensus       682 ILAEADn~WVVrLyySF----------QDkdnLYFVMdYIPGGDmMSLLI----rmgIFeE~LARFYIAEltcAiesVHk  747 (1034)
T KOG0608|consen  682 ILAEADNEWVVRLYYSF----------QDKDNLYFVMDYIPGGDMMSLLI----RMGIFEEDLARFYIAELTCAIESVHK  747 (1034)
T ss_pred             hHhhcCCcceEEEEEEe----------ccCCceEEEEeccCCccHHHHHH----HhccCHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999888          56889999999999999999886    55669999999999999999999999


Q ss_pred             CCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeecc---------cc------------------------------
Q 024842          178 LEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQ---------SK------------------------------  218 (262)
Q Consensus       178 ~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~---------~~------------------------------  218 (262)
                      .|  .|||||||+||||+.++    .+||+|||+|.-+.         ..                              
T Consensus       748 mG--FIHRDiKPDNILIDrdG----HIKLTDFGLCTGfRWTHdskYYq~gdH~RqDSmep~~e~~d~~~~lkvL~~ra~~  821 (1034)
T KOG0608|consen  748 MG--FIHRDIKPDNILIDRDG----HIKLTDFGLCTGFRWTHDSKYYQEGDHHRQDSMEPSPEWADISKCLKVLERRAMR  821 (1034)
T ss_pred             cc--ceecccCccceEEccCC----ceeeeeccccccceeccccccccCCCccccccCCCchhhccccccchHHHHHHHh
Confidence            99  99999999999999999    79999999998321         00                              


Q ss_pred             --------CccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecccCC
Q 024842          219 --------FALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMFGR  262 (262)
Q Consensus       219 --------~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~G~  262 (262)
                              ...|++.|.+||-+..-|+...     .|.|+.|+++|||+.|+
T Consensus       822 ~h~r~~ahslvgt~nyiapevl~r~g~~q~-----cdwws~gvil~em~~g~  868 (1034)
T KOG0608|consen  822 QHQRILAHSLVGTPNYIAPEVLARTGYTQL-----CDWWSVGVILYEMLVGQ  868 (1034)
T ss_pred             hhhhhhhhhhcCCCcccChHHhcccCcccc-----chhhHhhHHHHHHhhCC
Confidence                    0257777888877766665533     48999999999999986

>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

Probab=99.96  E-value=1.5e-28  Score=199.78  Aligned_cols=159  Identities=19%  Similarity=0.308  Sum_probs=130.8

Q ss_pred             cCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchH-HHHHHHHHHHHhhhC
Q 024842           24 NENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNE-QLEMVREEIRVSSLF  102 (262)
Q Consensus        24 ~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~-~~~~~~~E~~~l~~l  102 (262)
                      +.++|++.+.||.|+||.||+|++..+.+.                 ...+.+++|........ ..+.+.+|+++++.+
T Consensus         3 ~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~-----------------~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l   65 (275)
T cd05046           3 PRSNLQEITTLGRGEFGEVFLAKAKGIEEE-----------------GGETLVLVKALQKTKDENLQSEFRRELDMFRKL   65 (275)
T ss_pred             ChHhceeeeeecccceeEEEEEEeccCCcC-----------------CCcceEEEEccCCccchHHHHHHHHHHHHHHhc
Confidence            457899999999999999999998765432                 12346888877655443 457789999999999


Q ss_pred             CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhc-----CCCCCHHHHHHHHHHHHHHHHHHHc
Q 024842          103 SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTK-----KEFFSTSDVLQIFYQICAGLKHMHS  177 (262)
Q Consensus       103 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~-----~~~~~~~~~~~i~~ql~~~l~~lH~  177 (262)
                      +|+|++++++.+          ......+++||++.+++|.+++......     ...+++..++.++.|++.||+|||+
T Consensus        66 ~h~~iv~~~~~~----------~~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~l~~LH~  135 (275)
T cd05046          66 SHKNVVRLLGLC----------REAEPHYMILEYTDLGDLKQFLRATKSKDEKLKPPPLSTKQKVALCTQIALGMDHLSN  135 (275)
T ss_pred             CCcceeeeEEEE----------CCCCcceEEEEecCCCcHHHHHHhcccccccccccCCCHHHHHHHHHHHHHHHHHhhh
Confidence            999999999876          3356789999999999999988643311     1258999999999999999999999


Q ss_pred             CCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeec
Q 024842          178 LEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPA  215 (262)
Q Consensus       178 ~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~  215 (262)
                      ++  ++|+||||+||+++.++    .++|+|||++...
T Consensus       136 ~~--i~H~dlkp~Nili~~~~----~~~l~~~~~~~~~  167 (275)
T cd05046         136 AR--FVHRDLAARNCLVSSQR----EVKVSLLSLSKDV  167 (275)
T ss_pred             cC--cccCcCccceEEEeCCC----cEEEccccccccc
Confidence            98  99999999999998776    6999999998643

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s

>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

Probab=99.96  E-value=5.8e-29  Score=201.39  Aligned_cols=192  Identities=20%  Similarity=0.223  Sum_probs=147.2

Q ss_pred             CceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc-----chHHHHHHHHHHHHhh
Q 024842           26 NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ-----NNEQLEMVREEIRVSS  100 (262)
Q Consensus        26 ~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~-----~~~~~~~~~~E~~~l~  100 (262)
                      .+|+..+.||+|+||.||+|.+..+++                      .+++|++...     .......+.+|+.+++
T Consensus         2 ~~~~~~~~lg~g~~g~vy~~~~~~~~~----------------------~~~~k~~~~~~~~~~~~~~~~~~~~e~~~l~   59 (266)
T cd06651           2 INWRRGKLLGQGAFGRVYLCYDVDTGR----------------------ELAAKQVQFDPESPETSKEVSALECEIQLLK   59 (266)
T ss_pred             CCccccceecCCCCEEEEEEEEcCCCc----------------------EEEEEEeecCcCCchhHHHHHHHHHHHHHHH
Confidence            479999999999999999999876654                      5666655422     2234467888999999


Q ss_pred             hCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCC
Q 024842          101 LFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEP  180 (262)
Q Consensus       101 ~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~  180 (262)
                      .++||||+++++.+..        ......++++|++.+++|.+++.    ....+++..++.++.|++.||.|||+++ 
T Consensus        60 ~l~h~~i~~~~~~~~~--------~~~~~~~l~~e~~~~~~L~~~l~----~~~~l~~~~~~~~~~qi~~~l~~LH~~~-  126 (266)
T cd06651          60 NLQHERIVQYYGCLRD--------RAEKTLTIFMEYMPGGSVKDQLK----AYGALTESVTRKYTRQILEGMSYLHSNM-  126 (266)
T ss_pred             HcCCCCeeeEEEEEEc--------CCCCEEEEEEeCCCCCcHHHHHH----HcCCCCHHHHHHHHHHHHHHHHHHHhCC-
Confidence            9999999999987631        23456889999999999998886    3445899999999999999999999988 


Q ss_pred             CeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC--------ccCcccCCcccchhhhhhhhhhhhhcCcccchh
Q 024842          181 PYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF--------ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQ  252 (262)
Q Consensus       181 ~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~--------~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g  252 (262)
                       ++|+||+|+||+++.++    .++|+|||++.......        ..++..|.+||.+....     .....|+|++|
T Consensus       127 -i~H~~l~p~nil~~~~~----~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-----~~~~~Dv~slG  196 (266)
T cd06651         127 -IVHRDIKGANILRDSAG----NVKLGDFGASKRLQTICMSGTGIRSVTGTPYWMSPEVISGEG-----YGRKADVWSLG  196 (266)
T ss_pred             -eeeCCCCHHHEEECCCC----CEEEccCCCccccccccccCCccccCCccccccCHHHhCCCC-----CCchhhhHHHH
Confidence             99999999999998766    69999999987543211        22445566666442211     11246788888


Q ss_pred             eeheecccCC
Q 024842          253 ILMRELMFGR  262 (262)
Q Consensus       253 ~~~~~l~~G~  262 (262)
                      +++++|++|+
T Consensus       197 ~i~~el~~g~  206 (266)
T cd06651         197 CTVVEMLTEK  206 (266)
T ss_pred             HHHHHHHHCC
Confidence            8888887774

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development

>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl

Probab=99.96  E-value=3.5e-29  Score=203.14  Aligned_cols=159  Identities=18%  Similarity=0.276  Sum_probs=123.8

Q ss_pred             eEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc--chHHHHHHHHHHHHhhhCCCC
Q 024842           28 YRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ--NNEQLEMVREEIRVSSLFSHR  105 (262)
Q Consensus        28 y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~--~~~~~~~~~~E~~~l~~l~h~  105 (262)
                      +.+.+.||+|+||.||+|.+..+++.                    ..+++|.....  .....+.+..|+.+++.++|+
T Consensus         1 ~~i~~~ig~G~~g~V~~~~~~~~~~~--------------------~~~a~k~~~~~~~~~~~~~~~~~E~~~l~~l~h~   60 (272)
T cd05075           1 LALGKTLGEGEFGSVMEGQLNQDDSI--------------------LKVAVKTMKIAICTRSEMEDFLSEAVCMKEFDHP   60 (272)
T ss_pred             CccccccCcccCceEEEeEEccCCCe--------------------eeEEEEecccCcCCHHHHHHHHHHHHHHHhCCCC
Confidence            35678999999999999998665431                    14677765543  344567788999999999999


Q ss_pred             CccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhh--hcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCee
Q 024842          106 NLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQ--TKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYA  183 (262)
Q Consensus       106 ~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~--~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~iv  183 (262)
                      ||+++++.+.....    .......+++|+|+.+++|.+++....  .....+++..+..++.|++.||+|||+.+  ++
T Consensus        61 ~iv~~~~~~~~~~~----~~~~~~~~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~--i~  134 (272)
T cd05075          61 NVMRLIGVCLQTVE----SEGYPSPVVILPFMKHGDLHSFLLYSRLGDCPQYLPTQMLVKFMTDIASGMEYLSSKS--FI  134 (272)
T ss_pred             CcceEEEEEccCCc----ccCCCCcEEEEEeCCCCcHHHHHHHhcccCCcccCCHHHHHHHHHHHHHHHHHHHHCC--ee
Confidence            99999986532110    112335789999999999988774322  22345899999999999999999999988  99


Q ss_pred             ecCCCCCcEEEecCCCCCCceEEeeccceeecc
Q 024842          184 HNDVKPGNILITCRKGQPPLAILMDFGSARPAQ  216 (262)
Q Consensus       184 H~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~  216 (262)
                      ||||||+||+++.++    .++|+|||++....
T Consensus       135 H~dlkp~Nil~~~~~----~~kl~Dfg~~~~~~  163 (272)
T cd05075         135 HRDLAARNCMLNENM----NVCVADFGLSKKIY  163 (272)
T ss_pred             ccccchhheEEcCCC----CEEECCCCcccccC
Confidence            999999999997766    69999999988654

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor

>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

Probab=99.96  E-value=1.7e-28  Score=197.51  Aligned_cols=192  Identities=20%  Similarity=0.301  Sum_probs=148.2

Q ss_pred             ceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc--chHHHHHHHHHHHHhhhCCC
Q 024842           27 RYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ--NNEQLEMVREEIRVSSLFSH  104 (262)
Q Consensus        27 ~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~--~~~~~~~~~~E~~~l~~l~h  104 (262)
                      .|++.+.||+|++|.||++.+..+++                      .+++|++...  .....+.+.+|+++++.++|
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~----------------------~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~   58 (257)
T cd08223           1 AYCFVRVVGKGSYGEVSLVRHRTDGK----------------------QYVIKKLNLRNASRRERKAAEQEAQLLSQLKH   58 (257)
T ss_pred             CceEEEEecCCCCeEEEEEEEcCCCc----------------------EEEEEEEehhhcCHHHHHHHHHHHHHHHhCCC
Confidence            48999999999999999999876544                      5777776543  23345668889999999999


Q ss_pred             CCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeee
Q 024842          105 RNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAH  184 (262)
Q Consensus       105 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH  184 (262)
                      +|++++++.+.         ......+++||++.+++|.+++...  ....+++.+++.++.|++.||.+||+.+  ++|
T Consensus        59 ~~i~~~~~~~~---------~~~~~~~lv~e~~~~~~l~~~l~~~--~~~~l~~~~~~~~~~~l~~~l~~lH~~~--i~H  125 (257)
T cd08223          59 PNIVAYRESWE---------GEDGLLYIVMGFCEGGDLYHKLKEQ--KGKLLPENQVVEWFVQIAMALQYLHEKH--ILH  125 (257)
T ss_pred             CCeeeeeeeec---------CCCCEEEEEecccCCCcHHHHHHHh--cCCCCCHHHHHHHHHHHHHHHHHHHhCC--eec
Confidence            99999987652         2244678999999999999888632  2345899999999999999999999998  999


Q ss_pred             cCCCCCcEEEecCCCCCCceEEeeccceeeccccC-----ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecc
Q 024842          185 NDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELM  259 (262)
Q Consensus       185 ~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~  259 (262)
                      +||+|+||+++.++    .++|+|||++.......     ..++..|.+||....-     ..-...|+|++|+++++|+
T Consensus       126 ~di~p~nil~~~~~----~~~l~df~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-----~~~~~~Dv~slG~il~~l~  196 (257)
T cd08223         126 RDLKTQNVFLTRTN----IIKVGDLGIARVLENQCDMASTLIGTPYYMSPELFSNK-----PYNYKSDVWALGCCVYEMA  196 (257)
T ss_pred             cCCCchhEEEecCC----cEEEecccceEEecccCCccccccCCcCccChhHhcCC-----CCCchhhhHHHHHHHHHHH
Confidence            99999999998766    69999999998664322     2355567777644221     1112367777777777777


Q ss_pred             cCC
Q 024842          260 FGR  262 (262)
Q Consensus       260 ~G~  262 (262)
                      +|+
T Consensus       197 ~g~  199 (257)
T cd08223         197 TLK  199 (257)
T ss_pred             cCC
Confidence            764

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.

>KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=2e-30  Score=197.46  Aligned_cols=196  Identities=25%  Similarity=0.365  Sum_probs=156.3

Q ss_pred             eeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc--chHHHHHHHHHHHH
Q 024842           21 VWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ--NNEQLEMVREEIRV   98 (262)
Q Consensus        21 ~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~--~~~~~~~~~~E~~~   98 (262)
                      ...+.+.|.-..+||+|.||+||+|+...+++                      .|++|+....  .........+|+.+
T Consensus        12 ~~~~~~~yek~~kigqGtfgeVFkAr~~n~~k----------------------kvalkkvlmeneKeGfpitalreiki   69 (376)
T KOG0669|consen   12 FCDEVSKYEKLAKIGQGTFGEVFKARSKNTGK----------------------KVALKKVLMENEKEGFPITALREIKI   69 (376)
T ss_pred             ceecchHHHHHHhcCCchHHHHHHHhhcCccc----------------------hhHHHHHHHhccccCCcHHHHHHHHH
Confidence            34556789999999999999999999988876                      4666665543  22234456789999


Q ss_pred             hhhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcC
Q 024842           99 SSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSL  178 (262)
Q Consensus        99 l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~  178 (262)
                      +..++|+|++.+++.+-.  ++.........+|+||.+|+. +|..++.   +....++..++..++.++++||.|+|++
T Consensus        70 L~~lkHenv~nliEic~t--k~Tp~~r~r~t~ylVf~~ceh-DLaGlLs---n~~vr~sls~Ikk~Mk~Lm~GL~~iHr~  143 (376)
T KOG0669|consen   70 LQLLKHENVVNLIEICRT--KATPTNRDRATFYLVFDFCEH-DLAGLLS---NRKVRFSLSEIKKVMKGLMNGLYYIHRN  143 (376)
T ss_pred             HHHhcchhHHHHHHHHhh--ccCCcccccceeeeeHHHhhh-hHHHHhc---CccccccHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999998853  233333455668999998764 5666654   3446699999999999999999999998


Q ss_pred             CCCeeecCCCCCcEEEecCCCCCCceEEeeccceeecccc---------------------CccCcccCCcccchhhhhh
Q 024842          179 EPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSK---------------------FALGQRRYSCRNGLLSIVL  237 (262)
Q Consensus       179 ~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~---------------------~~~~~~~~~~~~d~~s~g~  237 (262)
                      .  |+|||+||.|+||+.++    .+||+|||+++-+...                     ...|...|++|.|+|+.||
T Consensus       144 k--ilHRDmKaaNvLIt~dg----ilklADFGlar~fs~~~n~~kprytnrvvTLwYrppEllLG~r~yg~~iDiWgAgC  217 (376)
T KOG0669|consen  144 K--ILHRDMKAANVLITKDG----ILKLADFGLARAFSTSKNVVKPRYTNRVVTLWYRPPELLLGDREYGPPIDIWGAGC  217 (376)
T ss_pred             h--HHhhcccHhhEEEcCCc----eEEeeccccccceecccccCCCCcccceeeeecCCHHHhhcccccCCcchhHhHHH
Confidence            8  99999999999999888    7999999999643311                     1357778999999999999


Q ss_pred             hhhhhhhcCcccc
Q 024842          238 HLSELLSCGTVRV  250 (262)
Q Consensus       238 ~~~e~~~~~~v~~  250 (262)
                      ++.|||+++.+.+
T Consensus       218 imaeMwtrspimq  230 (376)
T KOG0669|consen  218 IMAEMWTRSPIMQ  230 (376)
T ss_pred             HHHHHHccCcccc
Confidence            9999999876653

>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.96  E-value=7.7e-29  Score=200.44  Aligned_cols=192  Identities=19%  Similarity=0.239  Sum_probs=146.3

Q ss_pred             CceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc-----chHHHHHHHHHHHHhh
Q 024842           26 NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ-----NNEQLEMVREEIRVSS  100 (262)
Q Consensus        26 ~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~-----~~~~~~~~~~E~~~l~  100 (262)
                      .+|++.+.||+|++|.||+|.+..+++                      .+++|.+...     .......+.+|+.+++
T Consensus         2 ~~~~~~~~lg~g~~g~v~~~~~~~~~~----------------------~~~ik~~~~~~~~~~~~~~~~~~~~ei~~l~   59 (264)
T cd06653           2 VNWRLGKLLGRGAFGEVYLCYDADTGR----------------------ELAVKQVPFDPDSQETSKEVNALECEIQLLK   59 (264)
T ss_pred             CceeeeeeEccCCCeEEEEEEEcCCCC----------------------EEEEEEEecCcccchhhHHHHHHHHHHHHHH
Confidence            479999999999999999999876655                      5666654321     2334567889999999


Q ss_pred             hCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCC
Q 024842          101 LFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEP  180 (262)
Q Consensus       101 ~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~  180 (262)
                      .++|+||+++++.+.        .......++++|++.+++|.+++.    ....+++..++.++.|++.||.|||+++ 
T Consensus        60 ~l~h~~i~~~~~~~~--------~~~~~~~~~v~e~~~~~~L~~~~~----~~~~l~~~~~~~~~~~i~~al~~LH~~~-  126 (264)
T cd06653          60 NLRHDRIVQYYGCLR--------DPEEKKLSIFVEYMPGGSIKDQLK----AYGALTENVTRRYTRQILQGVSYLHSNM-  126 (264)
T ss_pred             HcCCCCcceEEEEEE--------cCCCCEEEEEEEeCCCCcHHHHHH----HcCCCCHHHHHHHHHHHHHHHHHHHhCC-
Confidence            999999999998763        133456889999999999998875    3445889999999999999999999998 


Q ss_pred             CeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC--------ccCcccCCcccchhhhhhhhhhhhhcCcccchh
Q 024842          181 PYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF--------ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQ  252 (262)
Q Consensus       181 ~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~--------~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g  252 (262)
                       ++|+||+|+||+++.++    .++|+|||++.......        ..++..|.+||.+..-.     .-...|+|++|
T Consensus       127 -i~H~dl~p~ni~i~~~~----~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-----~~~~~Di~slG  196 (264)
T cd06653         127 -IVHRDIKGANILRDSAG----NVKLGDFGASKRIQTICMSGTGIKSVTGTPYWMSPEVISGEG-----YGRKADVWSVA  196 (264)
T ss_pred             -EecCCCCHHHEEEcCCC----CEEECccccccccccccccCccccccCCcccccCHhhhcCCC-----CCccccHHHHH
Confidence             99999999999998766    69999999997653211        12444566665432211     11235777777


Q ss_pred             eeheecccCC
Q 024842          253 ILMRELMFGR  262 (262)
Q Consensus       253 ~~~~~l~~G~  262 (262)
                      +++++|++|+
T Consensus       197 ~il~~l~~g~  206 (264)
T cd06653         197 CTVVEMLTEK  206 (264)
T ss_pred             HHHHHHHhCC
Confidence            7777777764

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho

>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

Probab=99.96  E-value=4.4e-29  Score=204.64  Aligned_cols=192  Identities=22%  Similarity=0.251  Sum_probs=144.0

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccch-HHHHHHHHHHHHhhhCC
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNN-EQLEMVREEIRVSSLFS  103 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~-~~~~~~~~E~~~l~~l~  103 (262)
                      .++|++.+.||+|+||.||+|.+..+++                      .+++|.+..... .....+.+|+.+++.++
T Consensus         4 ~~~y~~~~~ig~g~~~~v~~~~~~~~~~----------------------~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~   61 (291)
T cd07870           4 ATSYLNLEKLGEGSYATVYKGISRINGQ----------------------LVALKVISMKTEEGVPFTAIREASLLKGLK   61 (291)
T ss_pred             cceeEEEEEEEecCCEEEEEEEEcCCCc----------------------EEEEEEecccCcCCCcHHHHHHHHHHHhcC
Confidence            3689999999999999999999876654                      577776654322 22235678999999999


Q ss_pred             CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCee
Q 024842          104 HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYA  183 (262)
Q Consensus       104 h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~iv  183 (262)
                      |+||+++.+.+          ......+++||++. +++.+++..   ....+++..+..++.|++.||.|||+.+  ++
T Consensus        62 h~ni~~~~~~~----------~~~~~~~lv~e~~~-~~l~~~~~~---~~~~~~~~~~~~~~~qi~~~L~~lH~~~--i~  125 (291)
T cd07870          62 HANIVLLHDII----------HTKETLTFVFEYMH-TDLAQYMIQ---HPGGLHPYNVRLFMFQLLRGLAYIHGQH--IL  125 (291)
T ss_pred             CCCEeEEEEEE----------ecCCeEEEEEeccc-CCHHHHHHh---CCCCCCHHHHHHHHHHHHHHHHHHHhCC--cc
Confidence            99999999887          33567899999985 677665531   3345788899999999999999999998  99


Q ss_pred             ecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-----ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheec
Q 024842          184 HNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMREL  258 (262)
Q Consensus       184 H~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l  258 (262)
                      |+||||+||+++.++    .++|+|||++.......     ..++..|.+||.+..-.    ......|+||+|+++++|
T Consensus       126 H~dlkp~Nil~~~~~----~~~l~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~----~~~~~~Dv~slG~~l~~l  197 (291)
T cd07870         126 HRDLKPQNLLISYLG----ELKLADFGLARAKSIPSQTYSSEVVTLWYRPPDVLLGAT----DYSSALDIWGAGCIFIEM  197 (291)
T ss_pred             cCCCChHHEEEcCCC----cEEEeccccccccCCCCCCCCCccccccccCCceeecCC----CCCcHHHHHHHHHHHHHH
Confidence            999999999998766    69999999987543221     23455677776542111    111235788888888888


Q ss_pred             ccCC
Q 024842          259 MFGR  262 (262)
Q Consensus       259 ~~G~  262 (262)
                      ++|+
T Consensus       198 ~~g~  201 (291)
T cd07870         198 LQGQ  201 (291)
T ss_pred             HhCC
Confidence            8774

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess

>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

Probab=99.96  E-value=6.8e-29  Score=200.50  Aligned_cols=192  Identities=22%  Similarity=0.332  Sum_probs=148.9

Q ss_pred             ceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccch--HHHHHHHHHHHHhhhCCC
Q 024842           27 RYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNN--EQLEMVREEIRVSSLFSH  104 (262)
Q Consensus        27 ~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~--~~~~~~~~E~~~l~~l~h  104 (262)
                      +|++.+.||+|++|.||++.+..+++                      .+++|.+.....  ...+.+..|+.+++.++|
T Consensus         1 ~y~~~~~lg~G~~~~v~~~~~~~~~~----------------------~~~ik~~~~~~~~~~~~~~~~~e~~~~~~l~~   58 (264)
T cd06626           1 RWQRGNKIGGGTFGKVYTAVNLDTGE----------------------LMAVKEIRIQDNDPKTIKEIADEMKVLELLKH   58 (264)
T ss_pred             CceeeeEeecCCCcEEEEEEECCCCc----------------------EEEEEEEECcccchHHHHHHHHHHHHHHhCCC
Confidence            58999999999999999999865544                      677777655433  356788999999999999


Q ss_pred             CCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeee
Q 024842          105 RNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAH  184 (262)
Q Consensus       105 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH  184 (262)
                      +||+++++.+          ......++++||+.+++|.+++.    ....+++..++.++.|++.||.|||+.+  ++|
T Consensus        59 ~~i~~~~~~~----------~~~~~~~lv~e~~~~~~L~~~~~----~~~~~~~~~~~~i~~~i~~~l~~lh~~~--i~H  122 (264)
T cd06626          59 PNLVKYYGVE----------VHREKVYIFMEYCSGGTLEELLE----HGRILDEHVIRVYTLQLLEGLAYLHSHG--IVH  122 (264)
T ss_pred             CChhheeeeE----------ecCCEEEEEEecCCCCcHHHHHh----hcCCCChHHHHHHHHHHHHHHHHHHHCC--ccc
Confidence            9999999876          33567899999999999999886    4455889999999999999999999998  999


Q ss_pred             cCCCCCcEEEecCCCCCCceEEeeccceeeccccC---------ccCcccCCcccchhhhhhhhhhhhhcCcccchheeh
Q 024842          185 NDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF---------ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILM  255 (262)
Q Consensus       185 ~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~---------~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~  255 (262)
                      +||+|+||+++.++    .++|+|||++.......         ..+...|.+||.+....  ........|+|++|+++
T Consensus       123 ~dl~~~nil~~~~~----~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~--~~~~~~~~Dv~s~G~il  196 (264)
T cd06626         123 RDIKPANIFLDHNG----VIKLGDFGCAVKLKNNTTTMGEEVQSLAGTPAYMAPEVITGGK--GKGHGRAADIWSLGCVV  196 (264)
T ss_pred             CCCCHHHEEECCCC----CEEEcccccccccCCCCCcccccccCCcCCcCccChhhccCCC--CCCCCcccchHHHHHHH
Confidence            99999999998766    69999999988754322         12344566666443221  11122346777777777


Q ss_pred             eecccCC
Q 024842          256 RELMFGR  262 (262)
Q Consensus       256 ~~l~~G~  262 (262)
                      +++++|+
T Consensus       197 ~~l~~g~  203 (264)
T cd06626         197 LEMATGK  203 (264)
T ss_pred             HHHHhCC
Confidence            7777664

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4

>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.96  E-value=2.4e-30  Score=219.02  Aligned_cols=194  Identities=21%  Similarity=0.294  Sum_probs=162.1

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCCC
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSH  104 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~h  104 (262)
                      .+.|.++..||.|+||.||+|....++-                      ..|.|.+.....+..+++.-|+.+|....|
T Consensus        31 ~d~WeIiGELGDGAFGKVyKA~nket~~----------------------lAAaKvIetkseEELEDylVEIeILa~CdH   88 (1187)
T KOG0579|consen   31 RDHWEIIGELGDGAFGKVYKAVNKETKL----------------------LAAAKVIETKSEEELEDYLVEIEILAECDH   88 (1187)
T ss_pred             HHHHHHHhhhcCccchhhhhhhcccchh----------------------hhhhhhhcccchhHHhhhhhhhhhhhcCCC
Confidence            4568899999999999999999875533                      457788888888889999999999999999


Q ss_pred             CCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeee
Q 024842          105 RNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAH  184 (262)
Q Consensus       105 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH  184 (262)
                      |+|+++++.|++          .+.+|+..|||.||....++-.   -+..+++.++..++.|++.||.|||+++  |||
T Consensus        89 P~ivkLl~ayy~----------enkLwiliEFC~GGAVDaimlE---L~r~LtE~QIqvvc~q~ldALn~LHs~~--iIH  153 (1187)
T KOG0579|consen   89 PVIVKLLSAYYF----------ENKLWILIEFCGGGAVDAIMLE---LGRVLTEDQIQVVCYQVLDALNWLHSQN--IIH  153 (1187)
T ss_pred             hHHHHHHHHHhc----------cCceEEEEeecCCchHhHHHHH---hccccchHHHHHHHHHHHHHHHHHhhcc--hhh
Confidence            999999999854          6789999999999999887642   4456999999999999999999999999  999


Q ss_pred             cCCCCCcEEEecCCCCCCceEEeeccceeeccc-----cCccCcccCCcccchhhhhh--hhhhhhhcCcccchheehee
Q 024842          185 NDVKPGNILITCRKGQPPLAILMDFGSARPAQS-----KFALGQRRYSCRNGLLSIVL--HLSELLSCGTVRVIQILMRE  257 (262)
Q Consensus       185 ~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~-----~~~~~~~~~~~~~d~~s~g~--~~~e~~~~~~v~~~g~~~~~  257 (262)
                      ||||+.|||++.+|    .++|+|||.+....+     ....|++-|++|+-+..--.  ..+++  ..||||+|++++|
T Consensus       154 RDLKAGNiL~TldG----dirLADFGVSAKn~~t~qkRDsFIGTPYWMAPEVvmCET~KD~PYDy--kaDiWSlGITLIE  227 (1187)
T KOG0579|consen  154 RDLKAGNILLTLDG----DIRLADFGVSAKNKSTRQKRDSFIGTPYWMAPEVVMCETFKDQPYDY--KADIWSLGITLIE  227 (1187)
T ss_pred             hhccccceEEEecC----cEeeecccccccchhHHhhhccccCCcccccchheeeccccCCCchh--hhhHHhhhhHHHH
Confidence            99999999999999    599999998876543     33478999999987633211  13343  3699999999999


Q ss_pred             cccC
Q 024842          258 LMFG  261 (262)
Q Consensus       258 l~~G  261 (262)
                      |..|
T Consensus       228 MAqi  231 (1187)
T KOG0579|consen  228 MAQI  231 (1187)
T ss_pred             Hhcc
Confidence            8754

>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

Probab=99.96  E-value=8.9e-29  Score=202.35  Aligned_cols=191  Identities=25%  Similarity=0.320  Sum_probs=149.0

Q ss_pred             CceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc--chHHHHHHHHHHHHhhhCC
Q 024842           26 NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ--NNEQLEMVREEIRVSSLFS  103 (262)
Q Consensus        26 ~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~--~~~~~~~~~~E~~~l~~l~  103 (262)
                      ++|++.+.||+|++|.||+|.+..+++                      .+++|.+...  .....+.+.+|+++++.++
T Consensus         1 ~~y~~~~~i~~g~~~~v~~~~~~~~~~----------------------~v~vK~~~~~~~~~~~~~~~~~e~~~l~~l~   58 (288)
T cd07833           1 NKYEVLGVVGEGAYGVVLKCRNKATGE----------------------IVAIKKFKESEDDEDVKKTALREVKVLRQLR   58 (288)
T ss_pred             CceeEEEEecccCCeeEEEEEeCCCCc----------------------EEEEehhhhhcccccchhHHHHHHHHHHhcC
Confidence            479999999999999999999876644                      6788876543  2334567889999999999


Q ss_pred             CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCee
Q 024842          104 HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYA  183 (262)
Q Consensus       104 h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~iv  183 (262)
                      |+||+++++.+.          ..+..+++|||+.++.+..+..    ....+++..++.++.|++.||.|||+.+  ++
T Consensus        59 ~~~i~~~~~~~~----------~~~~~~iv~e~~~~~~l~~~~~----~~~~~~~~~~~~~~~~i~~~l~~LH~~~--i~  122 (288)
T cd07833          59 HENIVNLKEAFR----------RKGRLYLVFEYVERTLLELLEA----SPGGLPPDAVRSYIWQLLQAIAYCHSHN--II  122 (288)
T ss_pred             CCCeeehhheEE----------ECCEEEEEEecCCCCHHHHHHh----cCCCCCHHHHHHHHHHHHHHHHHHHHCC--ee
Confidence            999999999873          3567999999998866655443    3455899999999999999999999998  99


Q ss_pred             ecCCCCCcEEEecCCCCCCceEEeeccceeeccccC------ccCcccCCcccchhhhhhhhhhhhhcCcccchheehee
Q 024842          184 HNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF------ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRE  257 (262)
Q Consensus       184 H~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~------~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~  257 (262)
                      |+||+|+||+++.++    .++|+|||++.......      ..++..|.+||.+.+..    ......|+|++|+++++
T Consensus       123 H~dl~~~ni~~~~~~----~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~----~~~~~~Dv~slG~~l~~  194 (288)
T cd07833         123 HRDIKPENILVSESG----VLKLCDFGFARALRARPASPLTDYVATRWYRAPELLVGDT----NYGKPVDVWAIGCIMAE  194 (288)
T ss_pred             cCCCCHHHeEECCCC----CEEEEeeecccccCCCccccccCcccccCCcCCchhcCCC----CcCchhhHHHHHHHHHH
Confidence            999999999998766    69999999988755432      22345566666653321    11234678888888888


Q ss_pred             cccCC
Q 024842          258 LMFGR  262 (262)
Q Consensus       258 l~~G~  262 (262)
                      |++|+
T Consensus       195 l~~g~  199 (288)
T cd07833         195 LLDGE  199 (288)
T ss_pred             HHhCC
Confidence            87774

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning

>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

Probab=99.96  E-value=8.9e-29  Score=206.94  Aligned_cols=195  Identities=24%  Similarity=0.335  Sum_probs=146.5

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc-chHHHHHHHHHHHHhhhCC
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ-NNEQLEMVREEIRVSSLFS  103 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~-~~~~~~~~~~E~~~l~~l~  103 (262)
                      +++|++.+.||+|++|.||+|.+..+++                      .|++|.+... .......+.+|+.+++.++
T Consensus         4 ~~~y~i~~~lg~G~~g~vy~~~~~~~~~----------------------~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~   61 (336)
T cd07849           4 GPRYQNLSYIGEGAYGMVCSATHKPTGV----------------------KVAIKKISPFEHQTFCQRTLREIKILRRFK   61 (336)
T ss_pred             ccceEEEEEEEecCCeEEEEEEEcCCCC----------------------eEEEEEecccccchhHHHHHHHHHHHHhCC
Confidence            4789999999999999999999876655                      5777766432 2334466788999999999


Q ss_pred             CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCee
Q 024842          104 HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYA  183 (262)
Q Consensus       104 h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~iv  183 (262)
                      |+||+++++.+...     ........+++++++. +++.+.+.     ...+++..++.++.|++.||.|||+.+  ++
T Consensus        62 h~niv~~~~~~~~~-----~~~~~~~~~lv~e~~~-~~l~~~~~-----~~~l~~~~~~~i~~ql~~aL~~LH~~~--iv  128 (336)
T cd07849          62 HENIIGILDIIRPP-----SFESFNDVYIVQELME-TDLYKLIK-----TQHLSNDHIQYFLYQILRGLKYIHSAN--VL  128 (336)
T ss_pred             CCCcCchhheeecc-----cccccceEEEEehhcc-cCHHHHHh-----cCCCCHHHHHHHHHHHHHHHHHHHhCC--ee
Confidence            99999999875310     0112345789999876 46766553     345999999999999999999999998  99


Q ss_pred             ecCCCCCcEEEecCCCCCCceEEeeccceeeccccC--------ccCcccCCcccchhhhhhhhhhhhhcCcccchheeh
Q 024842          184 HNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF--------ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILM  255 (262)
Q Consensus       184 H~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~--------~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~  255 (262)
                      ||||||+||+++.++    .++|+|||++.......        ..++..|.+||.+....    ......|+||+|+++
T Consensus       129 H~dlkp~Nill~~~~----~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~----~~~~~~DvwslGvil  200 (336)
T cd07849         129 HRDLKPSNLLLNTNC----DLKICDFGLARIADPEHDHTGFLTEYVATRWYRAPEIMLNSK----GYTKAIDIWSVGCIL  200 (336)
T ss_pred             ccCCCHHHEEECCCC----CEEECcccceeeccccccccCCcCCcCcCCCccChHHhhCCC----CCCcHHHHHHHHHHH
Confidence            999999999998766    69999999987654321        23455667776542211    111236888888888


Q ss_pred             eecccCC
Q 024842          256 RELMFGR  262 (262)
Q Consensus       256 ~~l~~G~  262 (262)
                      ++|++|+
T Consensus       201 ~el~~G~  207 (336)
T cd07849         201 AEMLSNR  207 (336)
T ss_pred             HHHHhCC
Confidence            8888875

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase

>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

Probab=99.96  E-value=8.3e-29  Score=199.90  Aligned_cols=190  Identities=21%  Similarity=0.304  Sum_probs=151.3

Q ss_pred             CceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccch-HHHHHHHHHHHHhhhCCC
Q 024842           26 NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNN-EQLEMVREEIRVSSLFSH  104 (262)
Q Consensus        26 ~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~-~~~~~~~~E~~~l~~l~h  104 (262)
                      ++|++.+.||.|++|.||+|.+..+++                      .+++|++..... ...+.+.+|+..+..++|
T Consensus         1 ~~~~~~~~i~~g~~~~v~~~~~~~~~~----------------------~~~vk~~~~~~~~~~~~~~~~e~~~l~~l~~   58 (264)
T cd06623           1 SDLERVKVLGQGSSGVVYKVRHKPTGK----------------------IYALKKIHVDGDEEFRKQLLRELKTLRSCES   58 (264)
T ss_pred             CcceeeeeeeecCCeEEEEEEEcCCCc----------------------EEEEEEeccCcchHHHHHHHHHHHHHHhcCC
Confidence            479999999999999999999887654                      677777665533 456788999999999999


Q ss_pred             CCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHc-CCCCee
Q 024842          105 RNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHS-LEPPYA  183 (262)
Q Consensus       105 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~-~~~~iv  183 (262)
                      +|++++++.+.          .....+++|+|+.+++|.+++.    ....+++..++.++.|++.|+.|||+ .+  ++
T Consensus        59 ~~i~~~~~~~~----------~~~~~~lv~e~~~~~~L~~~l~----~~~~l~~~~~~~~~~~l~~~l~~lh~~~~--~~  122 (264)
T cd06623          59 PYVVKCYGAFY----------KEGEISIVLEYMDGGSLADLLK----KVGKIPEPVLAYIARQILKGLDYLHTKRH--II  122 (264)
T ss_pred             CCeeeEEEEEc----------cCCeEEEEEEecCCCcHHHHHH----HcCCCCHHHHHHHHHHHHHHHHHHhccCC--Cc
Confidence            99999999873          3577999999999999999886    33669999999999999999999999 89  99


Q ss_pred             ecCCCCCcEEEecCCCCCCceEEeeccceeeccccCc-----cCcccCCcccchhhhhhhhhhhhhcCcccchheeheec
Q 024842          184 HNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKFA-----LGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMREL  258 (262)
Q Consensus       184 H~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~~-----~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l  258 (262)
                      |+||+|+||+++.++    .++|+|||.+........     .+...|.+||.+..-     .....+|+|++|+++|+|
T Consensus       123 H~~l~~~ni~~~~~~----~~~l~df~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~-----~~~~~~Dv~slG~il~~l  193 (264)
T cd06623         123 HRDIKPSNLLINSKG----EVKIADFGISKVLENTLDQCNTFVGTVTYMSPERIQGE-----SYSYAADIWSLGLTLLEC  193 (264)
T ss_pred             cCCCCHHHEEECCCC----CEEEccCccceecccCCCcccceeecccccCHhhhCCC-----CCCchhhHHHHHHHHHHH
Confidence            999999999998776    699999999887653322     244556666643221     112236777777777777


Q ss_pred             ccCC
Q 024842          259 MFGR  262 (262)
Q Consensus       259 ~~G~  262 (262)
                      ++|+
T Consensus       194 ~tg~  197 (264)
T cd06623         194 ALGK  197 (264)
T ss_pred             HhCC
Confidence            7764

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of

>cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

Probab=99.96  E-value=8.4e-29  Score=202.89  Aligned_cols=194  Identities=24%  Similarity=0.291  Sum_probs=148.4

Q ss_pred             ceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc----chHHHHHHHHHHHHhhhC
Q 024842           27 RYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ----NNEQLEMVREEIRVSSLF  102 (262)
Q Consensus        27 ~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~----~~~~~~~~~~E~~~l~~l  102 (262)
                      +|++.+.||.|+||.||++++.....                   ++..+++|.+...    .....+.+..|+.+++.+
T Consensus         1 ~y~~~~~lg~G~~g~v~~~~~~~~~~-------------------~g~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l   61 (290)
T cd05613           1 NFELLKVLGTGAYGKVFLVRKVSGHD-------------------SGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHI   61 (290)
T ss_pred             CceeeeeeccCCcceEEEEEeccCCC-------------------CCceEEEEEeehhhhhhcchHHHHHHHHHHHHHhc
Confidence            48899999999999999998753211                   2446888876543    223346678899999999


Q ss_pred             -CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCC
Q 024842          103 -SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPP  181 (262)
Q Consensus       103 -~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~  181 (262)
                       +|+||++++..+          ......+++||++.+++|.+++.    ....+++..+..++.|++.||.|||+.+  
T Consensus        62 ~~~~~i~~~~~~~----------~~~~~~~lv~e~~~~~~L~~~l~----~~~~l~~~~~~~~~~qi~~al~~lH~~~--  125 (290)
T cd05613          62 RQSPFLVTLHYAF----------QTDTKLHLILDYINGGELFTHLS----QRERFKEQEVQIYSGEIVLALEHLHKLG--  125 (290)
T ss_pred             ccCCChhceeeEe----------ecCCeEEEEEecCCCCcHHHHHH----HcCCCCHHHHHHHHHHHHHHHHHHHhCC--
Confidence             589999998877          33567899999999999999886    3455899999999999999999999988  


Q ss_pred             eeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC------ccCcccCCcccchhhhhhhhhhhhhcCcccchheeh
Q 024842          182 YAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF------ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILM  255 (262)
Q Consensus       182 ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~------~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~  255 (262)
                      ++||||+|+||+++.++    .++|+|||++.......      ..++..|.+||.+.....   ......|+|++|+++
T Consensus       126 i~H~dl~p~nil~~~~~----~~kl~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~---~~~~~~Dv~slG~~l  198 (290)
T cd05613         126 IIYRDIKLENILLDSNG----HVVLTDFGLSKEFHEDEVERAYSFCGTIEYMAPDIVRGGDG---GHDKAVDWWSMGVLM  198 (290)
T ss_pred             eeccCCCHHHeEECCCC----CEEEeeCccceecccccccccccccCCcccCChhhccCCCC---CCCccccHHHHHHHH
Confidence            99999999999998766    79999999988654322      234556777765532110   011236888888888


Q ss_pred             eecccCC
Q 024842          256 RELMFGR  262 (262)
Q Consensus       256 ~~l~~G~  262 (262)
                      ++|++|+
T Consensus       199 ~~ll~g~  205 (290)
T cd05613         199 YELLTGA  205 (290)
T ss_pred             HHHhcCC
Confidence            8888874

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

Probab=99.96  E-value=5.9e-29  Score=200.13  Aligned_cols=190  Identities=23%  Similarity=0.303  Sum_probs=147.5

Q ss_pred             ceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc-----hHHHHHHHHHHHHhhh
Q 024842           27 RYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN-----NEQLEMVREEIRVSSL  101 (262)
Q Consensus        27 ~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~-----~~~~~~~~~E~~~l~~  101 (262)
                      +|+..+.||+|++|.||+|.+..+++                      .+++|.+....     .+..+.+..|+.+++.
T Consensus         1 ~~~~~~~ig~g~~~~vy~~~~~~~~~----------------------~~~ik~~~~~~~~~~~~~~~~~~~~e~~~l~~   58 (258)
T cd06632           1 RWRKGELLGSGSFGSVYEGLNLDDGD----------------------FFAVKEVSLADDGQTGQEAVKQLEQEIALLSK   58 (258)
T ss_pred             CccccceeeecCCceEEEEEEcCCCc----------------------EEEEEEEEEccccccchHHHHHHHHHHHHHHh
Confidence            47788999999999999999875544                      56777654332     3345678899999999


Q ss_pred             CCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCC
Q 024842          102 FSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPP  181 (262)
Q Consensus       102 l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~  181 (262)
                      ++|+|++++++.+          ......++++||+.+++|.+++.    ....+++..++.++.|++.||.|||+.+  
T Consensus        59 ~~h~~i~~~~~~~----------~~~~~~~lv~e~~~~~~L~~~~~----~~~~~~~~~~~~~~~~i~~~l~~lH~~~--  122 (258)
T cd06632          59 LQHPNIVQYLGTE----------REEDNLYIFLELVPGGSLAKLLK----KYGSFPEPVIRLYTRQILLGLEYLHDRN--  122 (258)
T ss_pred             cCCCCchheeeeE----------ecCCeEEEEEEecCCCcHHHHHH----hcCCCCHHHHHHHHHHHHHHHHHHHHCC--
Confidence            9999999999876          33567899999999999999886    3445899999999999999999999998  


Q ss_pred             eeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC----ccCcccCCcccchhhhhhhhhhhhhcCcccchheehee
Q 024842          182 YAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRE  257 (262)
Q Consensus       182 ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~  257 (262)
                      ++|+||+|+||+++.++    .+||+|||++.......    ..++..|.+|+.+....    ......|+|++|+++++
T Consensus       123 i~H~dl~~~ni~~~~~~----~~kl~d~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~----~~~~~~D~~slG~~l~~  194 (258)
T cd06632         123 TVHRDIKGANILVDTNG----VVKLADFGMAKQVVEFSFAKSFKGSPYWMAPEVIAQQG----GYGLAADIWSLGCTVLE  194 (258)
T ss_pred             cccCCCCHHHEEECCCC----CEEEccCccceeccccccccccCCCcceeCHHHhcCCC----CCCchhhhHHHHHHHHH
Confidence            99999999999998766    69999999988654332    23445566665543211    01123678888888888


Q ss_pred             cccCC
Q 024842          258 LMFGR  262 (262)
Q Consensus       258 l~~G~  262 (262)
                      |++|+
T Consensus       195 l~~g~  199 (258)
T cd06632         195 MATGK  199 (258)
T ss_pred             HHhCC
Confidence            87764

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops

>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases

Probab=99.96  E-value=4.1e-29  Score=201.15  Aligned_cols=189  Identities=21%  Similarity=0.239  Sum_probs=141.0

Q ss_pred             cCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCC
Q 024842           24 NENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFS  103 (262)
Q Consensus        24 ~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~  103 (262)
                      +..+|++.+.||+|+||.||++.+...                       ..+++|.+..... ....+.+|+.+++.++
T Consensus         2 ~~~~~~~~~~lg~G~~~~v~~~~~~~~-----------------------~~~~iK~~~~~~~-~~~~~~~e~~~l~~l~   57 (256)
T cd05059           2 DPSELTFLKELGSGQFGVVHLGKWRGK-----------------------IDVAIKMIREGAM-SEDDFIEEAKVMMKLS   57 (256)
T ss_pred             ChHHcchhhhhccCCCceEEEeEecCC-----------------------ccEEEEEeccCCC-CHHHHHHHHHHHHhCC
Confidence            456799999999999999999987532                       2567776543322 2245778999999999


Q ss_pred             CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCee
Q 024842          104 HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYA  183 (262)
Q Consensus       104 h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~iv  183 (262)
                      ||||+++++.+          ......+++||++.+++|.+++..   ....+++..++.++.|++.||.|||+.+  ++
T Consensus        58 ~~~i~~~~~~~----------~~~~~~~lv~e~~~~~~L~~~l~~---~~~~~~~~~~~~i~~qi~~~l~~lH~~~--i~  122 (256)
T cd05059          58 HPNLVQLYGVC----------TKQRPIFIVTEYMANGCLLNYLRE---RKGKLGTEWLLDMCSDVCEAMEYLESNG--FI  122 (256)
T ss_pred             CCCEEEEEEEE----------cCCCceEEEEecCCCCCHHHHHHh---cccCCCHHHHHHHHHHHHHHHHHHHHCC--cc
Confidence            99999999876          335678999999999999998752   2346899999999999999999999998  99


Q ss_pred             ecCCCCCcEEEecCCCCCCceEEeeccceeeccccCcc------CcccCCcccchhhhhhhhhhhhhcCcccchheehee
Q 024842          184 HNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKFAL------GQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRE  257 (262)
Q Consensus       184 H~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~~~------~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~  257 (262)
                      |+||||+||+++.++    .++|+|||++....+....      ....|.+||.+..-.     .....|+|++|+++|+
T Consensus       123 H~dl~p~ni~i~~~~----~~kl~dfg~~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~~~-----~~~~~Di~slG~il~~  193 (256)
T cd05059         123 HRDLAARNCLVGEDN----VVKVSDFGLARYVLDDQYTSSQGTKFPVKWAPPEVFDYSR-----FSSKSDVWSFGVLMWE  193 (256)
T ss_pred             cccccHhhEEECCCC----cEEECCcccceecccccccccCCCCCCccccCHHHhccCC-----CCchhhHHHHHHHHHH
Confidence            999999999998766    6999999998765432211      112355555332111     1123566666666666


Q ss_pred             ccc
Q 024842          258 LMF  260 (262)
Q Consensus       258 l~~  260 (262)
                      |++
T Consensus       194 l~~  196 (256)
T cd05059         194 VFS  196 (256)
T ss_pred             Hhc
Confidence            665

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows

>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

Probab=99.96  E-value=1.7e-28  Score=205.76  Aligned_cols=161  Identities=19%  Similarity=0.276  Sum_probs=127.6

Q ss_pred             ecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc-hHHHHHHHHHHHHhhh
Q 024842           23 INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN-NEQLEMVREEIRVSSL  101 (262)
Q Consensus        23 ~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~-~~~~~~~~~E~~~l~~  101 (262)
                      +..++|++.+.||+|+||.||+|.+......                 ..++.||+|.+.... ......+.+|+.++..
T Consensus         4 ~~~~~~~~~~~lG~G~fg~V~~~~~~~~~~~-----------------~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~   66 (343)
T cd05103           4 FPRDRLKLGKPLGRGAFGQVIEADAFGIDKT-----------------ATCRTVAVKMLKEGATHSEHRALMSELKILIH   66 (343)
T ss_pred             cchhHhcccccccCCccceEEEEeeccCCcc-----------------ccceeEEEEEeccCCChHHHHHHHHHHHHHHh
Confidence            4567999999999999999999986543221                 134478888876543 3334668889999999


Q ss_pred             C-CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhh-----------------------------
Q 024842          102 F-SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQT-----------------------------  151 (262)
Q Consensus       102 l-~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~-----------------------------  151 (262)
                      + +||||+++++.+.         ......+++|||+.+++|.+++.....                             
T Consensus        67 l~~h~niv~~~~~~~---------~~~~~~~lv~ey~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (343)
T cd05103          67 IGHHLNVVNLLGACT---------KPGGPLMVIVEFCKFGNLSNYLRSKRGEFVPYKTKDARFRQGKSGYGDISEDLKRR  137 (343)
T ss_pred             ccCCccHhhhcceee---------cCCCceEEEEeccCCCcHHHHHHhcCCccccccccccccccccccccchhhhhhhh
Confidence            9 6899999998763         234567899999999999998754210                             


Q ss_pred             ----------------------------------cCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeeecCCCCCcEEEecC
Q 024842          152 ----------------------------------KKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCR  197 (262)
Q Consensus       152 ----------------------------------~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~dikp~Nill~~~  197 (262)
                                                        ....+++..+..++.|++.||+|||+++  ++||||||+||+++.+
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~--i~H~dikp~Nil~~~~  215 (343)
T cd05103         138 LDSITSSQSSASSGFVEEKSLSDVEEEEAEQEDLYKKVLTLEDLICYSFQVAKGMEFLASRK--CIHRDLAARNILLSEN  215 (343)
T ss_pred             ccccccccccccccccCCCccccchhhhhhhhhhhhccCCHHHHHHHHHHHHHHHHHHHhCC--eecCCCccCeEEEcCC
Confidence                                              0123678888999999999999999998  9999999999999876


Q ss_pred             CCCCCceEEeeccceeec
Q 024842          198 KGQPPLAILMDFGSARPA  215 (262)
Q Consensus       198 ~~~~~~~kl~Dfg~a~~~  215 (262)
                      +    .++|+|||++...
T Consensus       216 ~----~~kl~dfg~~~~~  229 (343)
T cd05103         216 N----VVKICDFGLARDI  229 (343)
T ss_pred             C----cEEEEeccccccc
Confidence            6    6999999998764

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp

>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.96  E-value=3e-29  Score=202.18  Aligned_cols=196  Identities=18%  Similarity=0.164  Sum_probs=145.2

Q ss_pred             EEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCCCCCccchh
Q 024842           32 RQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSHRNLLPLL  111 (262)
Q Consensus        32 ~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~  111 (262)
                      +.||.|+||.||+|.+...+....               .....+++|..........+.+.+|+.+++.++|||+++++
T Consensus         1 ~~lg~G~~~~Vy~~~~~~~~~~~~---------------~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~~~h~~iv~~~   65 (258)
T cd05078           1 ESLGQGTFTKIFKGIRREVGDYGE---------------LHKTEVLLKVLDKSHRNYSESFFEAASMMSQLSHKHLVLNY   65 (258)
T ss_pred             CCCCcccchhheeeeecccccccc---------------cccchhhHHhhcchhHHHHHHHHHHHHHHHhCCCCChhhee
Confidence            368999999999999865433100               01235788877665555567788899999999999999999


Q ss_pred             hhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeeecCCCCCc
Q 024842          112 DHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGN  191 (262)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~dikp~N  191 (262)
                      +.+.          .....+++|||+.+++|.+++..   ....+++..+..++.|++.||.|||+.+  ++||||||+|
T Consensus        66 ~~~~----------~~~~~~lv~e~~~~g~L~~~l~~---~~~~~~~~~~~~~~~qi~~~l~~lH~~~--iiH~dlkp~n  130 (258)
T cd05078          66 GVCV----------CGDESIMVQEYVKFGSLDTYLKK---NKNLINISWKLEVAKQLAWALHFLEDKG--LTHGNVCAKN  130 (258)
T ss_pred             eEEE----------eCCCcEEEEecCCCCcHHHHHhc---CCCCCCHHHHHHHHHHHHHHHHHHHHCC--eecCCCccce
Confidence            9873          24568999999999999988762   2335899999999999999999999988  9999999999


Q ss_pred             EEEecCCC----CCCceEEeeccceeeccccC-ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecccC
Q 024842          192 ILITCRKG----QPPLAILMDFGSARPAQSKF-ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMFG  261 (262)
Q Consensus       192 ill~~~~~----~~~~~kl~Dfg~a~~~~~~~-~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~G  261 (262)
                      |+++.++.    ..+.++++|||++....+.. ..++..|.+||.+.....    ....+|+||+|+++|+|++|
T Consensus       131 ili~~~~~~~~~~~~~~~l~d~g~~~~~~~~~~~~~~~~y~aPE~~~~~~~----~~~~~DiwslG~~l~~l~~g  201 (258)
T cd05078         131 VLLIREEDRKTGNPPFIKLSDPGISITVLPKEILLERIPWVPPECIENPQN----LSLAADKWSFGTTLWEIFSG  201 (258)
T ss_pred             EEEecccccccCCCceEEecccccccccCCchhccccCCccCchhccCCCC----CCchhhHHHHHHHHHHHHcC
Confidence            99987652    22347999999987654332 345556666665432110    11235777777777777776

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity

>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.96  E-value=4.7e-29  Score=224.58  Aligned_cols=203  Identities=22%  Similarity=0.298  Sum_probs=163.7

Q ss_pred             ecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc-chHHHHHHHHHHHHhhh
Q 024842           23 INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ-NNEQLEMVREEIRVSSL  101 (262)
Q Consensus        23 ~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~-~~~~~~~~~~E~~~l~~  101 (262)
                      ++..+-.+...||+|.||.||.|.-.......                . .-.|++|.+... +.+...+|.+|..+++.
T Consensus       689 v~~~~v~l~~~lG~G~FG~VY~g~~~~~~~~~----------------~-~~~vaiK~l~~~~~~~~~~~Fl~Ea~~m~~  751 (1025)
T KOG1095|consen  689 VPRKNVTLLRVLGKGAFGEVYEGTYSDVPGSV----------------S-PIQVAVKSLKRLSSEQEVSDFLKEALLMSK  751 (1025)
T ss_pred             CChhheEeeeeeccccccceEEEEEecCCCCc----------------c-ceEEEEEeccccCCHHHHHHHHHHHHHHhc
Confidence            55788899999999999999999865432210                0 225888887665 55667889999999999


Q ss_pred             CCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhc---CCCCCHHHHHHHHHHHHHHHHHHHcC
Q 024842          102 FSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTK---KEFFSTSDVLQIFYQICAGLKHMHSL  178 (262)
Q Consensus       102 l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~---~~~~~~~~~~~i~~ql~~~l~~lH~~  178 (262)
                      ++||||++++++++.          ....++++|||.+|+|.+++...+..   ...++...+..++.+++.|+.||+++
T Consensus       752 f~HpNiv~liGv~l~----------~~~~~i~leyM~gGDL~sflr~~r~~~~~~~~L~~~dLl~~a~dvA~G~~YLe~~  821 (1025)
T KOG1095|consen  752 FDHPNIVSLIGVCLD----------SGPPLILLEYMEGGDLLSFLRESRPAPFQPSNLSMRDLLAFALDVAKGMNYLESK  821 (1025)
T ss_pred             CCCcceeeEEEeecC----------CCCcEEEehhcccCcHHHHHHhcccccCCCCCCCHHHHHHHHHHHhhhhHHHHhC
Confidence            999999999999852          67799999999999999998753211   35588999999999999999999998


Q ss_pred             CCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC------------------ccCcccCCcccchhhhhhhhh
Q 024842          179 EPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF------------------ALGQRRYSCRNGLLSIVLHLS  240 (262)
Q Consensus       179 ~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~------------------~~~~~~~~~~~d~~s~g~~~~  240 (262)
                      .  .|||||.+.|+|++...    .+||+|||+|+.+....                  ...+..|+++.|+||+|+.+|
T Consensus       822 ~--fvHRDLAaRNCLL~~~r----~VKIaDFGlArDiy~~~yyr~~~~a~lPvkWm~PEsl~d~iFtskSDvWsFGVllW  895 (1025)
T KOG1095|consen  822 H--FVHRDLAARNCLLDERR----VVKIADFGLARDIYDKDYYRKHGEAMLPVKWMPPESLKDGIFTSKSDVWSFGVLLW  895 (1025)
T ss_pred             C--CcCcchhhhheeecccC----cEEEcccchhHhhhhchheeccCccccceecCCHHHHhhcccccccchhhhHHHHH
Confidence            8  99999999999997664    89999999999433221                  233356677779999999999


Q ss_pred             hhhhcCcccchheeheec
Q 024842          241 ELLSCGTVRVIQILMREL  258 (262)
Q Consensus       241 e~~~~~~v~~~g~~~~~l  258 (262)
                      |++++|..++-+....++
T Consensus       896 EifslG~~PY~~~~n~~v  913 (1025)
T KOG1095|consen  896 EIFSLGATPYPSRSNFEV  913 (1025)
T ss_pred             HHHhCCCCCCCCcchHHH
Confidence            999999888877665554

>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]

Probab=99.96  E-value=1.4e-29  Score=218.36  Aligned_cols=194  Identities=21%  Similarity=0.325  Sum_probs=157.0

Q ss_pred             ecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc-chHHHHHHHHHHHHhhh
Q 024842           23 INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ-NNEQLEMVREEIRVSSL  101 (262)
Q Consensus        23 ~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~-~~~~~~~~~~E~~~l~~  101 (262)
                      |+...-++.+.||.|.||+|++|+.+..++                   ....||||.++.. ......+|+.|+.++-+
T Consensus       626 Id~s~i~Ie~VIGaGEFGEVc~GrLk~pgk-------------------re~~VAIKTLK~GytekqrrdFL~EAsIMGQ  686 (996)
T KOG0196|consen  626 IDPSCVKIEKVIGAGEFGEVCSGRLKLPGK-------------------REITVAIKTLKAGYTEKQRRDFLSEASIMGQ  686 (996)
T ss_pred             cChhheEEEEEEecccccceecccccCCCC-------------------cceeEEEeeeccCccHHHHhhhhhhhhhccc
Confidence            455677899999999999999999887665                   3458999998876 34556789999999999


Q ss_pred             CCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCC
Q 024842          102 FSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPP  181 (262)
Q Consensus       102 l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~  181 (262)
                      ++||||+++.++.          .......++.|||++|+|..++..   +.+.|+..++..+++.|+.|+.||.+.+  
T Consensus       687 FdHPNIIrLEGVV----------Tks~PvMIiTEyMENGsLDsFLR~---~DGqftviQLVgMLrGIAsGMkYLsdm~--  751 (996)
T KOG0196|consen  687 FDHPNIIRLEGVV----------TKSKPVMIITEYMENGSLDSFLRQ---NDGQFTVIQLVGMLRGIASGMKYLSDMN--  751 (996)
T ss_pred             CCCCcEEEEEEEE----------ecCceeEEEhhhhhCCcHHHHHhh---cCCceEeehHHHHHHHHHHHhHHHhhcC--
Confidence            9999999999987          335668899999999999998864   4455999999999999999999999999  


Q ss_pred             eeecCCCCCcEEEecCCCCCCceEEeeccceeeccccCc-----cCc---ccCCcccchhhhhhhhhhhhhcCcccchhe
Q 024842          182 YAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKFA-----LGQ---RRYSCRNGLLSIVLHLSELLSCGTVRVIQI  253 (262)
Q Consensus       182 ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~~-----~~~---~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~  253 (262)
                      +|||||.+.|||++++-    .+|++|||+++.+++...     .|.   ..|++||.+     ..-...+.+||||+|+
T Consensus       752 YVHRDLAARNILVNsnL----vCKVsDFGLSRvledd~~~~ytt~GGKIPiRWTAPEAI-----a~RKFTsASDVWSyGI  822 (996)
T KOG0196|consen  752 YVHRDLAARNILVNSNL----VCKVSDFGLSRVLEDDPEAAYTTLGGKIPIRWTAPEAI-----AYRKFTSASDVWSYGI  822 (996)
T ss_pred             chhhhhhhhheeeccce----EEEeccccceeecccCCCccccccCCccceeecChhHh-----hhcccCchhhccccce
Confidence            99999999999995544    899999999998754431     111   256766655     2233445688888888


Q ss_pred             eheecc
Q 024842          254 LMRELM  259 (262)
Q Consensus       254 ~~~~l~  259 (262)
                      +|||.+
T Consensus       823 VmWEVm  828 (996)
T KOG0196|consen  823 VMWEVM  828 (996)
T ss_pred             EEEEec
Confidence            888843

>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases

Probab=99.96  E-value=8.2e-29  Score=199.83  Aligned_cols=191  Identities=21%  Similarity=0.257  Sum_probs=143.4

Q ss_pred             ecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhC
Q 024842           23 INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLF  102 (262)
Q Consensus        23 ~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l  102 (262)
                      +..++|.+.+.||.|++|.||+|.+...                       ..+++|.+..... ..+.+.+|+.+++.+
T Consensus         3 ~~~~~~~i~~~ig~g~~~~v~~~~~~~~-----------------------~~~~vK~~~~~~~-~~~~~~~e~~~l~~l   58 (261)
T cd05034           3 IPRESLKLERKLGAGQFGEVWMGTWNGT-----------------------TKVAVKTLKPGTM-SPEAFLQEAQIMKKL   58 (261)
T ss_pred             cchhheeeeeeeccCcceEEEEEEEcCC-----------------------ceEEEEEecCCcc-CHHHHHHHHHHHhhC
Confidence            5678999999999999999999986532                       2467776654332 236688999999999


Q ss_pred             CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCe
Q 024842          103 SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPY  182 (262)
Q Consensus       103 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~i  182 (262)
                      +|+|++++++.+          ......+++||++.+++|.+++...  ....+++..+..++.|++.||.|||+++  +
T Consensus        59 ~h~~i~~~~~~~----------~~~~~~~~v~e~~~~~~L~~~i~~~--~~~~~~~~~~~~~~~~i~~al~~lh~~~--i  124 (261)
T cd05034          59 RHDKLVQLYAVC----------SEEEPIYIVTEYMSKGSLLDFLKSG--EGKKLRLPQLVDMAAQIAEGMAYLESRN--Y  124 (261)
T ss_pred             CCCCEeeeeeee----------ecCCceEEEEeccCCCCHHHHHhcc--ccCCCCHHHHHHHHHHHHHHHHHHHhCC--c
Confidence            999999999876          3346789999999999999988632  2235899999999999999999999998  9


Q ss_pred             eecCCCCCcEEEecCCCCCCceEEeeccceeeccccCc------cCcccCCcccchhhhhhhhhhhhhcCcccchheehe
Q 024842          183 AHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKFA------LGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMR  256 (262)
Q Consensus       183 vH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~~------~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~  256 (262)
                      +|+||+|+||+++.++    .++|+|||++........      .....|.+||....-.     .....|+|++|++++
T Consensus       125 ~h~di~p~nili~~~~----~~~l~d~g~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~-----~~~~~Di~slG~il~  195 (261)
T cd05034         125 IHRDLAARNILVGENL----VCKIADFGLARLIEDDEYTAREGAKFPIKWTAPEAANYGR-----FTIKSDVWSFGILLT  195 (261)
T ss_pred             ccCCcchheEEEcCCC----CEEECccccceeccchhhhhhhccCCCccccCHHHhccCC-----cCchhHHHHHHHHHH
Confidence            9999999999998776    699999999876543211      1223455555332111     112346666666666


Q ss_pred             eccc
Q 024842          257 ELMF  260 (262)
Q Consensus       257 ~l~~  260 (262)
                      ++++
T Consensus       196 ~l~t  199 (261)
T cd05034         196 EIVT  199 (261)
T ss_pred             HHHh
Confidence            6655

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t

>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

Probab=99.96  E-value=1.5e-28  Score=197.62  Aligned_cols=192  Identities=21%  Similarity=0.306  Sum_probs=149.6

Q ss_pred             ceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc--chHHHHHHHHHHHHhhhCCC
Q 024842           27 RYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ--NNEQLEMVREEIRVSSLFSH  104 (262)
Q Consensus        27 ~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~--~~~~~~~~~~E~~~l~~l~h  104 (262)
                      +|++.+.||+|++|.||++.+..+++                      .+++|.+...  .....+.+.+|+.+++.++|
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~----------------------~~~ik~~~~~~~~~~~~~~~~~e~~~l~~~~~   58 (256)
T cd08220           1 KYEKIRVVGRGAFGIVHLCRRKADQK----------------------LVIIKQIPVEQMTKDERLAAQNECQVLKLLSH   58 (256)
T ss_pred             CceEEEEecccCceEEEEEEEcCCCc----------------------EEEEEEEeccccccHHHHHHHHHHHHHhhCCC
Confidence            58999999999999999999876544                      5677765433  23445778899999999999


Q ss_pred             CCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeee
Q 024842          105 RNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAH  184 (262)
Q Consensus       105 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH  184 (262)
                      ||++++++.+          ......+++||++.+++|.+++...  ....+++..++.++.|++.+|.|||+++  ++|
T Consensus        59 ~~i~~~~~~~----------~~~~~~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~~~~~i~~~l~~lh~~~--i~h  124 (256)
T cd08220          59 PNIIEYYENF----------LEDKALMIVMEYAPGGTLAEYIQKR--CNSLLDEDTILHFFVQILLALHHVHTKL--ILH  124 (256)
T ss_pred             CchhheeeeE----------ecCCEEEEEEecCCCCCHHHHHHHh--cccCCCHHHHHHHHHHHHHHHHHHHhCC--eec
Confidence            9999999876          3356789999999999999988632  2345899999999999999999999998  999


Q ss_pred             cCCCCCcEEEecCCCCCCceEEeeccceeeccccC----ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheeccc
Q 024842          185 NDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMF  260 (262)
Q Consensus       185 ~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~  260 (262)
                      +||+|+||+++.++.   .++|+|||.+.......    ..++..|.+||.+-...     .....|+|++|+++++|++
T Consensus       125 ~dl~~~nil~~~~~~---~~~l~d~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-----~~~~~Dv~slG~~l~~l~~  196 (256)
T cd08220         125 RDLKTQNILLDKHKM---VVKIGDFGISKILSSKSKAYTVVGTPCYISPELCEGKP-----YNQKSDIWALGCVLYELAS  196 (256)
T ss_pred             CCCCHHHEEEcCCCC---EEEEccCCCceecCCCccccccccCCcccCchhccCCC-----CCcccchHHHHHHHHHHHh
Confidence            999999999975442   58999999998765432    23455677776543221     1224678888888887777


Q ss_pred             CC
Q 024842          261 GR  262 (262)
Q Consensus       261 G~  262 (262)
                      |+
T Consensus       197 ~~  198 (256)
T cd08220         197 LK  198 (256)
T ss_pred             CC
Confidence            64

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with

>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes

Probab=99.96  E-value=9.2e-29  Score=199.55  Aligned_cols=190  Identities=22%  Similarity=0.303  Sum_probs=142.1

Q ss_pred             ecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhC
Q 024842           23 INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLF  102 (262)
Q Consensus        23 ~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l  102 (262)
                      +..++|++.+.||.|++|.||+|.+..+                       ..+++|....... ..+.+.+|+.+++.+
T Consensus         3 ~~~~~~~~~~~ig~g~~~~v~~~~~~~~-----------------------~~~~lK~~~~~~~-~~~~~~~E~~~l~~l   58 (260)
T cd05069           3 IPRESLRLDVKLGQGCFGEVWMGTWNGT-----------------------TKVAIKTLKPGTM-MPEAFLQEAQIMKKL   58 (260)
T ss_pred             CChHHeeeeeeecCcCCCeEEEEEEcCC-----------------------ceEEEEEcccCCc-cHHHHHHHHHHHHhC
Confidence            5667899999999999999999987543                       2467776543322 235678899999999


Q ss_pred             CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCe
Q 024842          103 SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPY  182 (262)
Q Consensus       103 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~i  182 (262)
                      +|+|++++++.+.           ....+++||++.+++|.+++...  ....+++..+..++.|++.||.|||+.+  +
T Consensus        59 ~h~~i~~~~~~~~-----------~~~~~~v~e~~~~~~L~~~~~~~--~~~~~~~~~~~~~~~~l~~al~~lH~~~--i  123 (260)
T cd05069          59 RHDKLVPLYAVVS-----------EEPIYIVTEFMGKGSLLDFLKEG--DGKYLKLPQLVDMAAQIADGMAYIERMN--Y  123 (260)
T ss_pred             CCCCeeeEEEEEc-----------CCCcEEEEEcCCCCCHHHHHhhC--CCCCCCHHHHHHHHHHHHHHHHHHHhCC--E
Confidence            9999999987652           34578999999999999988632  2344889999999999999999999988  9


Q ss_pred             eecCCCCCcEEEecCCCCCCceEEeeccceeeccccCc------cCcccCCcccchhhhhhhhhhhhhcCcccchheehe
Q 024842          183 AHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKFA------LGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMR  256 (262)
Q Consensus       183 vH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~~------~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~  256 (262)
                      +|+||+|+||+++.++    .++|+|||++........      .++..|.+|+.+...     ......|+|++|+++|
T Consensus       124 ~H~dl~~~Nill~~~~----~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~~-----~~~~~~Di~slG~~l~  194 (260)
T cd05069         124 IHRDLRAANILVGDNL----VCKIADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYG-----RFTIKSDVWSFGILLT  194 (260)
T ss_pred             eecccCcceEEEcCCC----eEEECCCccceEccCCcccccCCCccchhhCCHHHhccC-----CcChHHHHHHHHHHHH
Confidence            9999999999998766    699999999976543221      122346666533111     1112356777777777


Q ss_pred             eccc
Q 024842          257 ELMF  260 (262)
Q Consensus       257 ~l~~  260 (262)
                      +|++
T Consensus       195 el~t  198 (260)
T cd05069         195 ELVT  198 (260)
T ss_pred             HHHh
Confidence            7666

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an

>cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases

Probab=99.96  E-value=8.8e-29  Score=199.29  Aligned_cols=189  Identities=24%  Similarity=0.304  Sum_probs=146.3

Q ss_pred             EEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchH-HHHHHHHHHHHhhhCCCCCccch
Q 024842           32 RQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNE-QLEMVREEIRVSSLFSHRNLLPL  110 (262)
Q Consensus        32 ~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~  110 (262)
                      +.||+|+||.||+|.+.....                   ....+++|.+...... ..+.+.+|+..++.++|+|++++
T Consensus         1 ~~ig~g~~g~v~~~~~~~~~~-------------------~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~   61 (262)
T cd00192           1 KKLGEGAFGEVYKGKLKGKDG-------------------KTTEVAVKTLKEDASEEERKDFLKEARVMKKLGHPNVVRL   61 (262)
T ss_pred             CccccCCceEEEEEEEecCCC-------------------CCceEEeEeeccccchhHHHHHHHHHHHHhhcCCCChhee
Confidence            468999999999999875311                   1346788877665433 36788899999999999999999


Q ss_pred             hhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhc-----CCCCCHHHHHHHHHHHHHHHHHHHcCCCCeeec
Q 024842          111 LDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTK-----KEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHN  185 (262)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~-----~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~  185 (262)
                      ++.+.          .....+++|||+.+++|.+++......     ...+++..++.++.|++.||.|||+++  ++|+
T Consensus        62 ~~~~~----------~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~~--i~H~  129 (262)
T cd00192          62 LGVCT----------EEEPLYLVLEYMEGGDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAIQIAKGMEYLASKK--FVHR  129 (262)
T ss_pred             eeeec----------CCCceEEEEEeccCCcHHHHHhhccccccccccccCCHHHHHHHHHHHHHHHHHHHcCC--cccC
Confidence            98873          366789999999999999988743211     366999999999999999999999988  9999


Q ss_pred             CCCCCcEEEecCCCCCCceEEeeccceeeccccC-------ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheec
Q 024842          186 DVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-------ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMREL  258 (262)
Q Consensus       186 dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-------~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l  258 (262)
                      ||+|+||+++.++    .++|+|||.+.......       ..++..|.+||......     .....|+|++|+++++|
T Consensus       130 di~p~nili~~~~----~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-----~~~~~Di~slG~il~~l  200 (262)
T cd00192         130 DLAARNCLVGEDL----VVKISDFGLSRDVYDDDYYRKKTGGKLPIRWMAPESLKDGI-----FTSKSDVWSFGVLLWEI  200 (262)
T ss_pred             ccCcceEEECCCC----cEEEcccccccccccccccccccCCCcCccccCHHHhccCC-----cchhhccHHHHHHHHHH
Confidence            9999999998776    69999999998765432       23445667776443321     11236777777777777


Q ss_pred             cc
Q 024842          259 MF  260 (262)
Q Consensus       259 ~~  260 (262)
                      ++
T Consensus       201 ~~  202 (262)
T cd00192         201 FT  202 (262)
T ss_pred             Hh
Confidence            76

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan

>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

Probab=99.96  E-value=2.1e-28  Score=199.23  Aligned_cols=200  Identities=18%  Similarity=0.233  Sum_probs=146.7

Q ss_pred             ecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc-chHHHHHHHHHHHHhhh
Q 024842           23 INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ-NNEQLEMVREEIRVSSL  101 (262)
Q Consensus        23 ~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~-~~~~~~~~~~E~~~l~~  101 (262)
                      +..++|++.+.||+|++|.||+|.+....+.                 ..+..+++|++... .......+.+|+.+++.
T Consensus         3 ~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~-----------------~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~   65 (277)
T cd05062           3 VAREKITMSRELGQGSFGMVYEGIAKGVVKD-----------------EPETRVAIKTVNEAASMRERIEFLNEASVMKE   65 (277)
T ss_pred             ccHHHceeeeeeccccCCeEEEEEeccCCCC-----------------CceeEEEEEeccccCCHHHHHHHHHHHHHHHh
Confidence            4578899999999999999999987542110                 12346888876543 23344568899999999


Q ss_pred             CCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhc------CCCCCHHHHHHHHHHHHHHHHHH
Q 024842          102 FSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTK------KEFFSTSDVLQIFYQICAGLKHM  175 (262)
Q Consensus       102 l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~------~~~~~~~~~~~i~~ql~~~l~~l  175 (262)
                      ++||||+++++.+          ......+++|||+.+++|.+++......      ...+++..+..++.|++.||.||
T Consensus        66 l~~~~iv~~~~~~----------~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l  135 (277)
T cd05062          66 FNCHHVVRLLGVV----------SQGQPTLVIMELMTRGDLKSYLRSLRPEMENNPVQAPPSLKKMIQMAGEIADGMAYL  135 (277)
T ss_pred             CCCCCeeeEEEEE----------cCCCCeEEEEecCCCCCHHHHHHHcCccccccccccCCCHHHHHHHHHHHHHHHHHH
Confidence            9999999999887          3356789999999999999988643211      12357788999999999999999


Q ss_pred             HcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-------ccCcccCCcccchhhhhhhhhhhhhcCcc
Q 024842          176 HSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-------ALGQRRYSCRNGLLSIVLHLSELLSCGTV  248 (262)
Q Consensus       176 H~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-------~~~~~~~~~~~d~~s~g~~~~e~~~~~~v  248 (262)
                      |+.+  ++|+||||+||+++.++    .++|+|||++.......       ..++..|.+||.+..-.     .....|+
T Consensus       136 H~~~--~vH~dlkp~Nil~~~~~----~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-----~~~~~Di  204 (277)
T cd05062         136 NANK--FVHRDLAARNCMVAEDF----TVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGV-----FTTYSDV  204 (277)
T ss_pred             HHCC--cccCCcchheEEEcCCC----CEEECCCCCccccCCcceeecCCCCccCHhhcChhHhhcCC-----cCchhHH
Confidence            9988  99999999999998766    69999999987543221       12234566666442211     1123567


Q ss_pred             cchheeheeccc
Q 024842          249 RVIQILMRELMF  260 (262)
Q Consensus       249 ~~~g~~~~~l~~  260 (262)
                      ||+|+++|||++
T Consensus       205 ~slG~~l~el~~  216 (277)
T cd05062         205 WSFGVVLWEIAT  216 (277)
T ss_pred             HHHHHHHHHHHc
Confidence            777777777665

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh

>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

Probab=99.96  E-value=1.5e-29  Score=206.56  Aligned_cols=199  Identities=20%  Similarity=0.232  Sum_probs=146.9

Q ss_pred             cCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccch-HHHHHHHHHHHHhhhC
Q 024842           24 NENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNN-EQLEMVREEIRVSSLF  102 (262)
Q Consensus        24 ~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~-~~~~~~~~E~~~l~~l  102 (262)
                      +..+|++.+.||+|+||.||+|.+..+...                 .....+++|.+..... ...+.+.+|+.+++.+
T Consensus         3 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~-----------------~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~l   65 (283)
T cd05091           3 NLSTVRFMEELGEDRFGKVYKGHLFGTAPG-----------------EQTQAVAIKTLKDKAEGPLREEFKHEAMMRSRL   65 (283)
T ss_pred             CHHHHHHHHHhCCCCCCeEEEEEEecCCCC-----------------CceeEEEEEEccCCCCHHHHHHHHHHHHHHhcC
Confidence            456788999999999999999987654211                 1234788888775543 3346688999999999


Q ss_pred             CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhh------------hcCCCCCHHHHHHHHHHHHH
Q 024842          103 SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQ------------TKKEFFSTSDVLQIFYQICA  170 (262)
Q Consensus       103 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~------------~~~~~~~~~~~~~i~~ql~~  170 (262)
                      +||||+++++.+          ......+++++++.+++|.+++....            .....+++..++.++.|++.
T Consensus        66 ~h~~iv~~~~~~----------~~~~~~~~~~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~~  135 (283)
T cd05091          66 QHPNIVCLLGVV----------TKEQPLSMIFSYCSHSDLHEFLVMRSPHSDVGSTDDDKTVKSTLEPADFVHIVTQIAA  135 (283)
T ss_pred             CCCCcCeEEEEE----------cCCCceEEEEEcCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHH
Confidence            999999999987          33566899999999999998875321            11235788999999999999


Q ss_pred             HHHHHHcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-------ccCcccCCcccchhhhhhhhhhhh
Q 024842          171 GLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-------ALGQRRYSCRNGLLSIVLHLSELL  243 (262)
Q Consensus       171 ~l~~lH~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-------~~~~~~~~~~~d~~s~g~~~~e~~  243 (262)
                      ||.|+|+.+  ++||||||+||+++.++    .+||+|||++.......       ..++..|.+||.+..-.     ..
T Consensus       136 aL~~lH~~g--i~H~dlkp~Nil~~~~~----~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-----~~  204 (283)
T cd05091         136 GMEFLSSHH--VVHKDLATRNVLVFDKL----NVKISDLGLFREVYAADYYKLMGNSLLPIRWMSPEAIMYGK-----FS  204 (283)
T ss_pred             HHHHHHHcC--ccccccchhheEecCCC----ceEecccccccccccchheeeccCccCCccccCHHHHhcCC-----CC
Confidence            999999988  99999999999998765    69999999987543221       12334566666442111     11


Q ss_pred             hcCcccchheeheeccc
Q 024842          244 SCGTVRVIQILMRELMF  260 (262)
Q Consensus       244 ~~~~v~~~g~~~~~l~~  260 (262)
                      ...|+||+|++++||++
T Consensus       205 ~~~Dv~slG~~l~el~~  221 (283)
T cd05091         205 IDSDIWSYGVVLWEVFS  221 (283)
T ss_pred             cchhHHHHHHHHHHHHc
Confidence            23566666666666665

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

Probab=99.96  E-value=9.8e-29  Score=200.59  Aligned_cols=191  Identities=19%  Similarity=0.280  Sum_probs=142.3

Q ss_pred             ceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc----------hHHHHHHHHHH
Q 024842           27 RYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN----------NEQLEMVREEI   96 (262)
Q Consensus        27 ~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~----------~~~~~~~~~E~   96 (262)
                      +|.+.+.||.|++|.||+|.+..+++                      .+++|.+....          ....+.+..|+
T Consensus         2 ~~~~~~~lg~g~~~~vy~~~~~~~~~----------------------~~a~K~~~~~~~~~~~~~~~~~~~~~~~~~e~   59 (272)
T cd06629           2 KWVKGELIGKGTYGRVYLALNVTTGE----------------------MMAVKQVELPATIAGRHDSRQKDMVKALRSEI   59 (272)
T ss_pred             ceeecceecccCceEEEEEeecCCCc----------------------eeeeeeeechhhhhcccchHHHHHHHHHHHHH
Confidence            58899999999999999999876554                      56666543211          11234678899


Q ss_pred             HHhhhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHH
Q 024842           97 RVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMH  176 (262)
Q Consensus        97 ~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH  176 (262)
                      .+++.++|||++++++.+          ......+++|||+.+++|.+++.    ....+++..+..++.|++.||.|||
T Consensus        60 ~~l~~l~h~~i~~~~~~~----------~~~~~~~lv~e~~~~~~L~~~l~----~~~~l~~~~~~~~~~qi~~~l~~lH  125 (272)
T cd06629          60 ETLKDLDHLNIVQYLGFE----------TTEEYLSIFLEYVPGGSIGSCLR----TYGRFEEQLVRFFTEQVLEGLAYLH  125 (272)
T ss_pred             HHHHhcCCCCcceEEEEe----------ccCCceEEEEecCCCCcHHHHHh----hccCCCHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999876          33567899999999999999886    3356899999999999999999999


Q ss_pred             cCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-------ccCcccCCcccchhhhhhhhhhhhhcCccc
Q 024842          177 SLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-------ALGQRRYSCRNGLLSIVLHLSELLSCGTVR  249 (262)
Q Consensus       177 ~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-------~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~  249 (262)
                      +.+  ++|+||+|+||+++.++    .++|+|||++.......       ..++..|.+||...+..   .......|+|
T Consensus       126 ~~~--i~H~dl~~~nil~~~~~----~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~---~~~~~~~Dv~  196 (272)
T cd06629         126 SKG--ILHRDLKADNLLVDADG----ICKISDFGISKKSDDIYDNDQNMSMQGSVFWMAPEVIHSYS---QGYSAKVDIW  196 (272)
T ss_pred             hCC--eeecCCChhhEEEcCCC----eEEEeeccccccccccccccccccccCCccccCHHHhcccc---CCCCccchhH
Confidence            988  99999999999998766    79999999987653211       12334455554332211   0112235666


Q ss_pred             chheeheecccCC
Q 024842          250 VIQILMRELMFGR  262 (262)
Q Consensus       250 ~~g~~~~~l~~G~  262 (262)
                      ++|++++++++|+
T Consensus       197 slG~~l~~l~~g~  209 (272)
T cd06629         197 SLGCVVLEMFAGR  209 (272)
T ss_pred             HHHHHHHHHHhCC
Confidence            6666666666663

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

Probab=99.96  E-value=1.4e-28  Score=200.78  Aligned_cols=199  Identities=23%  Similarity=0.273  Sum_probs=146.1

Q ss_pred             cCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc-hHHHHHHHHHHHHhhhC
Q 024842           24 NENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN-NEQLEMVREEIRVSSLF  102 (262)
Q Consensus        24 ~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~-~~~~~~~~~E~~~l~~l  102 (262)
                      ..++|++.+.||+|+||.||+|.+...+..                 .....+++|.+.... ....+.+.+|+.+++.+
T Consensus         3 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~-----------------~~~~~v~~K~~~~~~~~~~~~~~~~ei~~l~~l   65 (283)
T cd05048           3 PLSAVRFLEELGEGAFGKVYKGELTGPNER-----------------LSATSVAIKTLKENAEPKVQQEFRQEAELMSDL   65 (283)
T ss_pred             ChHHcchhhcccCccCCcEEEEEEecCCCC-----------------cceeeEEEEecccCCCHHHHHHHHHHHHHHHhc
Confidence            346899999999999999999997654421                 123467888776443 33456788999999999


Q ss_pred             CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhh------------cCCCCCHHHHHHHHHHHHH
Q 024842          103 SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQT------------KKEFFSTSDVLQIFYQICA  170 (262)
Q Consensus       103 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~------------~~~~~~~~~~~~i~~ql~~  170 (262)
                      +||||+++++.+.          .....+++|||+.+++|.+++.....            ....+++..++.++.|++.
T Consensus        66 ~h~~i~~~~~~~~----------~~~~~~~~~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~  135 (283)
T cd05048          66 QHPNIVCLLGVCT----------KEQPTCMLFEYLAHGDLHEFLVRNSPHSDVGAESGDETVKSSLDCSDFLHIAIQIAA  135 (283)
T ss_pred             CCcccceEEEEEc----------CCCceEEEEecCCCCcHHHHHHhcCCCcccccccccccccCCCCHHHHHHHHHHHHH
Confidence            9999999998873          34568999999999999998864311            1145888999999999999


Q ss_pred             HHHHHHcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-------ccCcccCCcccchhhhhhhhhhhh
Q 024842          171 GLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-------ALGQRRYSCRNGLLSIVLHLSELL  243 (262)
Q Consensus       171 ~l~~lH~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-------~~~~~~~~~~~d~~s~g~~~~e~~  243 (262)
                      ||.|||+.+  ++|+||||+||+++.++    .++|+|||++.......       ..++..|.+||....-.     ..
T Consensus       136 al~~lH~~~--i~H~dlkp~Nil~~~~~----~~~L~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-----~~  204 (283)
T cd05048         136 GMEYLSSHH--FVHRDLAARNCLVGEGL----TVKISDFGLSRDIYSADYYRVQSKSLLPVRWMPPEAILYGK-----FT  204 (283)
T ss_pred             HHHHHHhCC--eeccccccceEEEcCCC----cEEECCCcceeeccccccccccCCCcccccccCHHHhccCc-----Cc
Confidence            999999998  99999999999998766    69999999987643221       12334566666332111     11


Q ss_pred             hcCcccchheeheeccc
Q 024842          244 SCGTVRVIQILMRELMF  260 (262)
Q Consensus       244 ~~~~v~~~g~~~~~l~~  260 (262)
                      ...|+||+|+++|||++
T Consensus       205 ~~sDv~slG~il~el~~  221 (283)
T cd05048         205 TESDIWSFGVVLWEIFS  221 (283)
T ss_pred             hhhhHHHHHHHHHHHHc
Confidence            23456666666666554

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer

>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

Probab=99.96  E-value=8e-29  Score=200.36  Aligned_cols=188  Identities=18%  Similarity=0.212  Sum_probs=145.0

Q ss_pred             ceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc------chHHHHHHHHHHHHhh
Q 024842           27 RYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ------NNEQLEMVREEIRVSS  100 (262)
Q Consensus        27 ~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~------~~~~~~~~~~E~~~l~  100 (262)
                      +|++.+.||+|+||.||+|.+. ++                      ..+++|.+...      .......+.+|+.+++
T Consensus         1 ~~~~~~~ig~g~~~~v~~~~~~-~~----------------------~~~avk~~~~~~~~~~~~~~~~~~~~~e~~~l~   57 (265)
T cd06631           1 EWTKGEVLGKGAYGTVYCGLTN-QG----------------------QLIAVKQVELDTSNVLAAEKEYEKLQEEVDLLK   57 (265)
T ss_pred             CccccceEeccCCeEEEEEEEc-CC----------------------CeEEEEEeecCccchhhHHHHHHHHHHHHHHHH
Confidence            5888999999999999999863 22                      35677765432      1223456889999999


Q ss_pred             hCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCC
Q 024842          101 LFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEP  180 (262)
Q Consensus       101 ~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~  180 (262)
                      .++|+||+++.+.+          ......++++|++.+++|.+++.    +...+++..++.++.|++.||+|||+.+ 
T Consensus        58 ~l~~~~i~~~~~~~----------~~~~~~~lv~e~~~~~~L~~~l~----~~~~~~~~~~~~~~~qi~~~l~~lH~~~-  122 (265)
T cd06631          58 SLKHVNIVQYLGTC----------LDDNTISIFMEFVPGGSISSILN----RFGPLPEPVFCKYTKQILDGVAYLHNNC-  122 (265)
T ss_pred             hcCCCCEeeEeeEe----------ecCCeEEEEEecCCCCcHHHHHH----hcCCCCHHHHHHHHHHHHHHHHHHHhCC-
Confidence            99999999999987          33578999999999999999886    3345899999999999999999999988 


Q ss_pred             CeeecCCCCCcEEEecCCCCCCceEEeeccceeecccc-----------CccCcccCCcccchhhhhhhhhhhhhcCccc
Q 024842          181 PYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSK-----------FALGQRRYSCRNGLLSIVLHLSELLSCGTVR  249 (262)
Q Consensus       181 ~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~-----------~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~  249 (262)
                       ++|+||+|+||+++.++    .++|+|||++......           ...++..|.+||.+....     ....+|+|
T Consensus       123 -i~H~dl~p~nil~~~~~----~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~-----~~~~~Dv~  192 (265)
T cd06631         123 -VVHRDIKGNNVMLMPNG----IIKLIDFGCARRLAWVGLHGTHSNMLKSMHGTPYWMAPEVINESG-----YGRKSDIW  192 (265)
T ss_pred             -cccCCcCHHhEEECCCC----eEEeccchhhHhhhhccccccccccccccCCCccccChhhhcCCC-----CcchhhHH
Confidence             99999999999998766    6999999998754211           123445566666543222     12346788


Q ss_pred             chheeheecccCC
Q 024842          250 VIQILMRELMFGR  262 (262)
Q Consensus       250 ~~g~~~~~l~~G~  262 (262)
                      ++|+++++|++|+
T Consensus       193 slG~~~~~l~~g~  205 (265)
T cd06631         193 SIGCTVFEMATGK  205 (265)
T ss_pred             HHHHHHHHHHhCC
Confidence            8888888887774

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.

>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

Probab=99.96  E-value=1.1e-28  Score=199.50  Aligned_cols=194  Identities=21%  Similarity=0.306  Sum_probs=151.5

Q ss_pred             CceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc-hHHHHHHHHHHHHhhhCCC
Q 024842           26 NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN-NEQLEMVREEIRVSSLFSH  104 (262)
Q Consensus        26 ~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~-~~~~~~~~~E~~~l~~l~h  104 (262)
                      ++|++.+.||.|++|.||+|.+..++.                      .+++|+..... ....+.+.+|+..++.++|
T Consensus         1 ~~y~~~~~lg~g~~~~v~~~~~~~~~~----------------------~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~~   58 (267)
T cd06610           1 DDYELIEVIGVGATAVVYAAICLPNNE----------------------KVAIKRIDLEKCQTSVDELRKEVQAMSQCNH   58 (267)
T ss_pred             CcceeeeeecCCCCeEEEEEEEcCCCc----------------------EEEEEEeccCCcchHHHHHHHHHHHHHhcCC
Confidence            479999999999999999999776544                      57777665432 2355778999999999999


Q ss_pred             CCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeee
Q 024842          105 RNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAH  184 (262)
Q Consensus       105 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH  184 (262)
                      +|++++++.+.          .....+++|+++.+++|.+++..... ...+++..++.++.|++.||.+||+.+  ++|
T Consensus        59 ~~i~~~~~~~~----------~~~~~~iv~e~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~ql~~al~~lh~~~--i~h  125 (267)
T cd06610          59 PNVVKYYTSFV----------VGDELWLVMPYLSGGSLLDIMKSSYP-RGGLDEAIIATVLKEVLKGLEYLHSNG--QIH  125 (267)
T ss_pred             CCEEEEEEEEe----------eCCEEEEEEeccCCCcHHHHHHHhcc-cCCCCHHHHHHHHHHHHHHHHHHHhCC--eec
Confidence            99999998763          35678999999999999998863221 245899999999999999999999998  999


Q ss_pred             cCCCCCcEEEecCCCCCCceEEeeccceeeccccCc---------cCcccCCcccchhhhhhhhhhhhhcCcccchheeh
Q 024842          185 NDVKPGNILITCRKGQPPLAILMDFGSARPAQSKFA---------LGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILM  255 (262)
Q Consensus       185 ~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~~---------~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~  255 (262)
                      +||+|+||+++.++    .++|+|||++........         .++..|.+|+.+....    .....+|+|++|+++
T Consensus       126 ~~l~p~ni~~~~~~----~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~~~----~~~~~~Dv~slG~i~  197 (267)
T cd06610         126 RDIKAGNILLGEDG----SVKIADFGVSASLADGGDRTRKVRKTFVGTPCWMAPEVMEQVH----GYDFKADIWSFGITA  197 (267)
T ss_pred             CCCCHHhEEEcCCC----CEEEcccchHHHhccCccccccccccccCChhhcChHHHcccc----CcCcccchHhHhHHH
Confidence            99999999998766    699999999876554321         2445566666543320    112246889999989


Q ss_pred             eecccCC
Q 024842          256 RELMFGR  262 (262)
Q Consensus       256 ~~l~~G~  262 (262)
                      ++|++|+
T Consensus       198 ~~l~~g~  204 (267)
T cd06610         198 IELATGA  204 (267)
T ss_pred             HHHHhCC
Confidence            8888884

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1

>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

Probab=99.96  E-value=1e-28  Score=200.24  Aligned_cols=192  Identities=18%  Similarity=0.170  Sum_probs=134.2

Q ss_pred             EeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc-hHHHHHHHHHHHHhhhCCCCCccchh
Q 024842           33 QLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN-NEQLEMVREEIRVSSLFSHRNLLPLL  111 (262)
Q Consensus        33 ~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~~  111 (262)
                      .||+|+||.||++.......                    ...+++|...... ....+.+.+|+.+++.++|||+++++
T Consensus         2 ~lg~G~~g~v~~~~~~~~~~--------------------~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~   61 (268)
T cd05086           2 EIGNGWFGKVLLSEIYTDTG--------------------VARVVVKELKANASSKEQNEFLQQGDPYRILQHPNILQCL   61 (268)
T ss_pred             cCCCCcCceEEEEEEEcCCC--------------------cceEEEEEecCCCChHHHHHHHHHHHHHhccCCcchhheE
Confidence            58999999999997643322                    1134555544332 33456788999999999999999999


Q ss_pred             hhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeeecCCCCCc
Q 024842          112 DHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGN  191 (262)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~dikp~N  191 (262)
                      +.+.          .....+++|||+.+++|.+++..........++..++.++.|++.||+|||+.+  ++|+||||+|
T Consensus        62 ~~~~----------~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~~--i~H~dikp~n  129 (268)
T cd05086          62 GQCV----------EAIPYLLVFEYCELGDLKSYLSQEQWHRRNSQLLLLQRMACEIAAGVTHMHKHN--FLHSDLALRN  129 (268)
T ss_pred             EEec----------CCCccEEEEecCCCCcHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHCC--eeccCCccce
Confidence            9873          356689999999999999988643333344677888999999999999999988  9999999999


Q ss_pred             EEEecCCCCCCceEEeeccceeeccc-------cCccCcccCCcccchhhhh--hhhhhhhhcCcccchheeheeccc
Q 024842          192 ILITCRKGQPPLAILMDFGSARPAQS-------KFALGQRRYSCRNGLLSIV--LHLSELLSCGTVRVIQILMRELMF  260 (262)
Q Consensus       192 ill~~~~~~~~~~kl~Dfg~a~~~~~-------~~~~~~~~~~~~~d~~s~g--~~~~e~~~~~~v~~~g~~~~~l~~  260 (262)
                      ||++.++    .++|+|||++.....       ....++..|.+||.+....  ..........|+||+|++++||++
T Consensus       130 il~~~~~----~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~  203 (268)
T cd05086         130 CFLTSDL----TVKVGDYGIGPSRYKEDYIETEDDKCVPLRWLAPELVGEFHGGLITAEQTKPSNVWALGVTLWELFE  203 (268)
T ss_pred             EEEcCCc----cEEecccccccccCcchhhhcccCCcCcccccCchhcccccCccccCCCCCcchhHHHHHHHHHHHh
Confidence            9997766    699999998764221       1112344555555432110  001111223566666666666654

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage

>KOG0604 consensus MAP kinase-activated protein kinase 2 [Signal transduction mechanisms]

Probab=99.96  E-value=6.3e-29  Score=193.34  Aligned_cols=194  Identities=22%  Similarity=0.278  Sum_probs=150.1

Q ss_pred             CCceEEE-EEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhC-
Q 024842           25 ENRYRIL-RQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLF-  102 (262)
Q Consensus        25 ~~~y~~~-~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l-  102 (262)
                      .++|.+. +.||-|-.|.|-.|.++.+++                      .+|+|.+...     +...+|+++.-.. 
T Consensus        60 tedY~is~qvLG~GinGkV~~C~~k~T~e----------------------kfALKvL~Ds-----~KARrEVeLHw~~s  112 (400)
T KOG0604|consen   60 TEDYSISWQVLGAGINGKVVQCVHKRTQE----------------------KFALKVLLDS-----PKARREVELHWMAS  112 (400)
T ss_pred             hhhheehhhhhccccCCceEEEEeccchh----------------------hhHHHHHhcC-----HHHHhHhhhhhhhc
Confidence            4567664 568999999999999998877                      5788877654     3445778775444 


Q ss_pred             CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCe
Q 024842          103 SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPY  182 (262)
Q Consensus       103 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~i  182 (262)
                      .||||+.++++|...+      .....+.+|||++.||.|++.++..  ....|+|.++..|+.||..|+.|||+.+  |
T Consensus       113 ~h~~iV~IidVyeNs~------~~rkcLLiVmE~meGGeLfsriq~~--g~~afTErea~eI~~qI~~Av~~lH~~n--I  182 (400)
T KOG0604|consen  113 GHPHIVSIIDVYENSY------QGRKCLLIVMECMEGGELFSRIQDR--GDQAFTEREASEIMKQIGLAVRYLHSMN--I  182 (400)
T ss_pred             CCCceEEeehhhhhhc------cCceeeEeeeecccchHHHHHHHHc--ccccchHHHHHHHHHHHHHHHHHHHhcc--h
Confidence            6999999999986433      2356688899999999999988743  3356999999999999999999999999  9


Q ss_pred             eecCCCCCcEEEecCCCCCCceEEeeccceeeccccCccCcc----cCCcccchhhhhhhhhhhhhcCcccchheeheec
Q 024842          183 AHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKFALGQR----RYSCRNGLLSIVLHLSELLSCGTVRVIQILMREL  258 (262)
Q Consensus       183 vH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~----~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l  258 (262)
                      .||||||+|+|.+.... ...+||+|||+|+....+....++    -|.+|+.+   |.-.++.  .-|+||+|++||-|
T Consensus       183 AHRDlKpENLLyt~t~~-na~lKLtDfGFAK~t~~~~~L~TPc~TPyYvaPevl---g~eKydk--scdmwSlgVimYIl  256 (400)
T KOG0604|consen  183 AHRDLKPENLLYTTTSP-NAPLKLTDFGFAKETQEPGDLMTPCFTPYYVAPEVL---GPEKYDK--SCDMWSLGVIMYIL  256 (400)
T ss_pred             hhccCChhheeeecCCC-CcceEecccccccccCCCccccCCcccccccCHHHh---CchhcCC--CCCccchhHHHHHh
Confidence            99999999999986653 336999999999987765554444    44455433   2223332  25899999999999


Q ss_pred             ccC
Q 024842          259 MFG  261 (262)
Q Consensus       259 ~~G  261 (262)
                      ++|
T Consensus       257 LCG  259 (400)
T KOG0604|consen  257 LCG  259 (400)
T ss_pred             hcC
Confidence            988

>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

Probab=99.96  E-value=1.2e-28  Score=200.75  Aligned_cols=199  Identities=19%  Similarity=0.250  Sum_probs=148.9

Q ss_pred             cCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchH-HHHHHHHHHHHhhhC
Q 024842           24 NENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNE-QLEMVREEIRVSSLF  102 (262)
Q Consensus        24 ~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~-~~~~~~~E~~~l~~l  102 (262)
                      ..++|.+.+.||+|+||.||+|.+......                 .....+++|.+...... ..+.+.+|+++++.+
T Consensus         3 ~~~~~~~~~~lg~g~~~~v~~~~~~~~~~~-----------------~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l   65 (280)
T cd05049           3 QRDTIVLKRELGEGAFGKVFLGECYHLEPE-----------------NDKELVAVKTLKETASNDARKDFEREAELLTNF   65 (280)
T ss_pred             ChHHhhHHhhccccCCceEeeeeeccccCc-----------------CCcceEEEEeecccCCHHHHHHHHHHHHHHHhc
Confidence            356799999999999999999987543110                 12347888887655433 457889999999999


Q ss_pred             CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhh----------hcCCCCCHHHHHHHHHHHHHHH
Q 024842          103 SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQ----------TKKEFFSTSDVLQIFYQICAGL  172 (262)
Q Consensus       103 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~----------~~~~~~~~~~~~~i~~ql~~~l  172 (262)
                      +|+|++++++.+.          .....+++|||+.+++|.+++....          .....+++..++.++.|++.||
T Consensus        66 ~~~~i~~~~~~~~----------~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l  135 (280)
T cd05049          66 QHENIVKFYGVCT----------EGDPPIMVFEYMEHGDLNKFLRSHGPDAAFLKSPDSPMGELTLSQLLQIAVQIASGM  135 (280)
T ss_pred             CCCCchheeeEEe----------cCCCeEEEEecCCCCCHHHHHHhcCCchhhhcccccccccccHHHHHHHHHHHHHHH
Confidence            9999999999873          3467999999999999999886431          1224478899999999999999


Q ss_pred             HHHHcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-------ccCcccCCcccchhhhhhhhhhhhhc
Q 024842          173 KHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-------ALGQRRYSCRNGLLSIVLHLSELLSC  245 (262)
Q Consensus       173 ~~lH~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-------~~~~~~~~~~~d~~s~g~~~~e~~~~  245 (262)
                      .+||+++  ++|+||||+||+++.++    .++|+|||++.......       ...+..|.+||.+..-.     ....
T Consensus       136 ~~lH~~~--i~h~dlkp~nili~~~~----~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-----~~~~  204 (280)
T cd05049         136 VYLASQH--FVHRDLATRNCLVGYDL----VVKIGDFGMSRDVYTTDYYRVGGHTMLPIRWMPPESIMYRK-----FTTE  204 (280)
T ss_pred             HHHhhCC--eeccccccceEEEcCCC----eEEECCcccceecccCcceecCCCCcccceecChhhhccCC-----cchh
Confidence            9999998  99999999999998776    79999999987543221       12234566666432211     1223


Q ss_pred             Ccccchheeheeccc
Q 024842          246 GTVRVIQILMRELMF  260 (262)
Q Consensus       246 ~~v~~~g~~~~~l~~  260 (262)
                      .|+||+|+++++|++
T Consensus       205 ~Di~slG~il~e~~~  219 (280)
T cd05049         205 SDVWSFGVVLWEIFT  219 (280)
T ss_pred             hhHHHHHHHHHHHHh
Confidence            566666666666665

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt

>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha

Probab=99.96  E-value=5e-29  Score=207.71  Aligned_cols=190  Identities=20%  Similarity=0.278  Sum_probs=140.3

Q ss_pred             EEEEeecc--cceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc--chHHHHHHHHHHHHhhhCCCC
Q 024842           30 ILRQLGEG--GFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ--NNEQLEMVREEIRVSSLFSHR  105 (262)
Q Consensus        30 ~~~~ig~G--~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~--~~~~~~~~~~E~~~l~~l~h~  105 (262)
                      +.+.||+|  +|++||++++..+++                      .||+|++...  .....+.+.+|+.+++.++||
T Consensus         2 ~~~~ig~G~~~~~~v~~~~~~~~~~----------------------~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~hp   59 (327)
T cd08227           2 LLTVIGRGFEDLMTVNLARYKPTGE----------------------YVTVRRINLEACTNEMVTFLQGELHVSKLFNHP   59 (327)
T ss_pred             hhhhccccccceEEEEEEeecccCc----------------------EEEEEEechhhccHHHHHHHHHHHHHHHhcCCC
Confidence            46789999  789999999987765                      5777776543  233446677899999999999


Q ss_pred             CccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeeec
Q 024842          106 NLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHN  185 (262)
Q Consensus       106 ~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~  185 (262)
                      ||+++++.+.          .....+++|||+.+++|.+++....  ...+++..++.++.|++.||.|||+++  ++||
T Consensus        60 niv~~~~~~~----------~~~~~~lv~e~~~~~~l~~~~~~~~--~~~l~~~~~~~i~~qi~~~L~~LH~~~--iiH~  125 (327)
T cd08227          60 NIVPYRATFI----------ADNELWVVTSFMAYGSAKDLICTHF--MDGMSELAIAYILQGVLKALDYIHHMG--YVHR  125 (327)
T ss_pred             CeeeEEEEEE----------ECCEEEEEEeccCCCcHHHHHHhhc--cCCCCHHHHHHHHHHHHHHHHHHHHCC--EecC
Confidence            9999999873          3567899999999999999885322  234899999999999999999999998  9999


Q ss_pred             CCCCCcEEEecCCCCCCceEEeeccceeecccc------------CccCcccCCcccchhhhhhhhhhhhhcCcccchhe
Q 024842          186 DVKPGNILITCRKGQPPLAILMDFGSARPAQSK------------FALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQI  253 (262)
Q Consensus       186 dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~------------~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~  253 (262)
                      ||||+||+++.++    .++++||+.+......            ...++..|.+||.+..-.   .......|+||+|+
T Consensus       126 dlkp~Nil~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~---~~~~~~~DiwslG~  198 (327)
T cd08227         126 SVKASHILISVDG----KVYLSGLRSNLSMINHGQRLRVVHDFPKYSVKVLPWLSPEVLQQNL---QGYDAKSDIYSVGI  198 (327)
T ss_pred             CCChhhEEEecCC----cEEEcccchhhccccccccccccccccccccceecccChHHhhccc---CCCCchhhHHHHHH
Confidence            9999999998776    6999999865432211            012233355555442210   00112357777777


Q ss_pred             eheecccCC
Q 024842          254 LMRELMFGR  262 (262)
Q Consensus       254 ~~~~l~~G~  262 (262)
                      ++++|++|+
T Consensus       199 il~el~~g~  207 (327)
T cd08227         199 TACELANGH  207 (327)
T ss_pred             HHHHHHHCC
Confidence            777777764

Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype

>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

Probab=99.96  E-value=4.2e-29  Score=201.48  Aligned_cols=151  Identities=19%  Similarity=0.305  Sum_probs=129.4

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCCC
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSH  104 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~h  104 (262)
                      ..+|++.+.||.|+||.||+|.+.. +                      ..+++|.+........+.+..|+.+++.++|
T Consensus         5 ~~~y~~~~~ig~g~~~~vy~~~~~~-~----------------------~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~~   61 (261)
T cd05148           5 REEFTLERKLGSGYFGEVWEGLWKN-R----------------------VRVAIKILKSDDLLKQQDFQKEVQALKRLRH   61 (261)
T ss_pred             HHHHHHhhhhccCCCccEEEeEecC-C----------------------CcEEEEeccccchhhHHHHHHHHHHHhcCCC
Confidence            4579999999999999999999865 2                      3678888776666556788899999999999


Q ss_pred             CCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeee
Q 024842          105 RNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAH  184 (262)
Q Consensus       105 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH  184 (262)
                      +|++++++.+          ......+++|||+.+++|.+++...  ....+++..++.++.|++.||.|||+.+  ++|
T Consensus        62 ~~i~~~~~~~----------~~~~~~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~~~~~i~~al~~lH~~~--i~h  127 (261)
T cd05148          62 KHLISLFAVC----------SVGEPVYIITELMEKGSLLAFLRSP--EGQVLPVASLIDMACQVAEGMAYLEEQN--SIH  127 (261)
T ss_pred             cchhheeeeE----------ecCCCeEEEEeecccCCHHHHHhcC--CCCCCCHHHHHHHHHHHHHHHHHHHHCC--eec
Confidence            9999999876          3456789999999999999988632  2345899999999999999999999998  999


Q ss_pred             cCCCCCcEEEecCCCCCCceEEeeccceeecc
Q 024842          185 NDVKPGNILITCRKGQPPLAILMDFGSARPAQ  216 (262)
Q Consensus       185 ~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~  216 (262)
                      +||+|+||+++.++    .++|+|||.+....
T Consensus       128 ~dl~~~nilv~~~~----~~kl~d~g~~~~~~  155 (261)
T cd05148         128 RDLAARNILVGEDL----VCKVADFGLARLIK  155 (261)
T ss_pred             cccCcceEEEcCCc----eEEEccccchhhcC
Confidence            99999999998776    69999999987654

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom

>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes

Probab=99.96  E-value=2.5e-28  Score=196.06  Aligned_cols=144  Identities=20%  Similarity=0.358  Sum_probs=120.2

Q ss_pred             EEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc-chHHHHHHHHHHHHhhhCCCCCccch
Q 024842           32 RQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ-NNEQLEMVREEIRVSSLFSHRNLLPL  110 (262)
Q Consensus        32 ~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~-~~~~~~~~~~E~~~l~~l~h~~i~~~  110 (262)
                      +.||+|+||.||+|++..+++                      .+++|..... .......+.+|+++++.++||||+++
T Consensus         1 ~~lg~g~~g~vy~~~~~~~~~----------------------~~a~k~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~   58 (252)
T cd05084           1 ERIGRGNFGEVFSGRLRADNT----------------------PVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRL   58 (252)
T ss_pred             CccCcccCccEEEEEEecCCc----------------------eEEEEecCccCCHHHHHHHHHHHHHHHhCCCCCcceE
Confidence            368999999999999876544                      5777765433 23445678899999999999999999


Q ss_pred             hhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeeecCCCCC
Q 024842          111 LDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPG  190 (262)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~dikp~  190 (262)
                      ++.+          ......+++|||+.+++|.+++..   ....+++..++.++.|++.||.|||+.+  ++|+||||+
T Consensus        59 ~~~~----------~~~~~~~lv~e~~~~~~L~~~~~~---~~~~~~~~~~~~~~~qi~~~L~~lH~~~--i~H~dl~p~  123 (252)
T cd05084          59 IGVC----------TQKQPIYIVMELVQGGDFLTFLRT---EGPRLKVKELIQMVENAAAGMEYLESKH--CIHRDLAAR  123 (252)
T ss_pred             EEEE----------cCCCCeEEEEeeccCCcHHHHHHh---CCCCCCHHHHHHHHHHHHHHHHHHHhCC--ccccccchh
Confidence            9887          335678999999999999988752   2345899999999999999999999988  999999999


Q ss_pred             cEEEecCCCCCCceEEeeccceeecc
Q 024842          191 NILITCRKGQPPLAILMDFGSARPAQ  216 (262)
Q Consensus       191 Nill~~~~~~~~~~kl~Dfg~a~~~~  216 (262)
                      ||+++.++    .++|+|||++....
T Consensus       124 nil~~~~~----~~kl~dfg~~~~~~  145 (252)
T cd05084         124 NCLVTEKN----VLKISDFGMSREEE  145 (252)
T ss_pred             eEEEcCCC----cEEECccccCcccc
Confidence            99998766    69999999987543

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular

>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

Probab=99.96  E-value=1.2e-28  Score=199.75  Aligned_cols=195  Identities=17%  Similarity=0.181  Sum_probs=138.1

Q ss_pred             EEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc-hHHHHHHHHHHHHhhhCCCCCccch
Q 024842           32 RQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN-NEQLEMVREEIRVSSLFSHRNLLPL  110 (262)
Q Consensus        32 ~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~  110 (262)
                      +.||+|+||.||+|.+.....                    ...+++|...... ......+.+|+.+++.++||||+++
T Consensus         1 ~~lg~G~~g~Vy~~~~~~~~~--------------------~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~   60 (269)
T cd05087           1 KEIGNGWFGKVILGEVNSGYT--------------------PAQVVVKELRVSASVQEQMKFLEEAQPYRSLQHSNLLQC   60 (269)
T ss_pred             CcccccCCceEEEEEEcCCCC--------------------ceEEEEEecCCCCChHHHHHHHHHHHHHHhCCCCCEeeE
Confidence            368999999999998653221                    2357777765543 2334568889999999999999999


Q ss_pred             hhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhc-CCCCCHHHHHHHHHHHHHHHHHHHcCCCCeeecCCCC
Q 024842          111 LDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTK-KEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKP  189 (262)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~-~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~dikp  189 (262)
                      ++.+          ......+++|||+.+++|.+++...... ....++..+..++.|++.||.|||+.+  ++|+||||
T Consensus        61 ~~~~----------~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~--i~H~dlkp  128 (269)
T cd05087          61 LGQC----------TEVTPYLLVMEFCPLGDLKGYLRSCRKAELMTPDPTTLQRMACEIALGLLHLHKNN--FIHSDLAL  128 (269)
T ss_pred             EEEE----------cCCCCcEEEEECCCCCcHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHCC--EeccccCc
Confidence            9876          3355689999999999999988643322 234667788899999999999999988  99999999


Q ss_pred             CcEEEecCCCCCCceEEeeccceeeccccC-------ccCcccCCcccchhhhhhh--hhhhhhcCcccchheeheeccc
Q 024842          190 GNILITCRKGQPPLAILMDFGSARPAQSKF-------ALGQRRYSCRNGLLSIVLH--LSELLSCGTVRVIQILMRELMF  260 (262)
Q Consensus       190 ~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-------~~~~~~~~~~~d~~s~g~~--~~e~~~~~~v~~~g~~~~~l~~  260 (262)
                      +||+++.++    .++|+|||++.......       ..++..|.+||-+-.....  ........|+||+|++++||++
T Consensus       129 ~nil~~~~~----~~kL~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~  204 (269)
T cd05087         129 RNCLLTADL----TVKIGDYGLSHNKYKEDYYVTPDQLWVPLRWIAPELVDEVHGNLLVVDQTKESNVWSLGVTIWELFE  204 (269)
T ss_pred             ceEEEcCCC----cEEECCccccccccCcceeecCCCcCCcccccCHhHhccccccccccCCCccchhHHHHHHHHHHHh
Confidence            999998765    69999999986433221       1233445555543211100  0111224677777777777764


Q ss_pred             -CC
Q 024842          261 -GR  262 (262)
Q Consensus       261 -G~  262 (262)
                       |+
T Consensus       205 ~g~  207 (269)
T cd05087         205 LGS  207 (269)
T ss_pred             CCC
Confidence             53

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells

>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases

Probab=99.96  E-value=3.9e-28  Score=197.00  Aligned_cols=160  Identities=18%  Similarity=0.252  Sum_probs=125.8

Q ss_pred             eEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc--chHHHHHHHHHHHHhhhCCCC
Q 024842           28 YRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ--NNEQLEMVREEIRVSSLFSHR  105 (262)
Q Consensus        28 y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~--~~~~~~~~~~E~~~l~~l~h~  105 (262)
                      |++.+.||+|+||.||+|.+...+.                   ....+++|.+...  .......+..|+..++.++||
T Consensus         1 ~~~~~~lg~G~~g~v~~~~~~~~~~-------------------~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~   61 (273)
T cd05035           1 LKLGKILGEGEFGSVMEGQLSQDDG-------------------SQLKVAVKTMKLDIHTYSEIEEFLSEAACMKDFDHP   61 (273)
T ss_pred             CccccccCcCCCceEEEEEEecCCC-------------------CcceEEEEEeccCcCCHHHHHHHHHHHHHHHhCCCC
Confidence            5788999999999999998765432                   1246888877644  234456788999999999999


Q ss_pred             CccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhh--hcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCee
Q 024842          106 NLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQ--TKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYA  183 (262)
Q Consensus       106 ~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~--~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~iv  183 (262)
                      |++++++.+...    .........+++|||+.+++|..++....  .....+++..++.++.|++.||.|||+.+  ++
T Consensus        62 ~iv~~~~~~~~~----~~~~~~~~~~~v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~aL~~lH~~~--i~  135 (273)
T cd05035          62 NVMKLIGVCFEA----SSLQKIPKPMVILPFMKHGDLHSFLLYSRLGGLPEKLPLQTLLKFMVDIALGMEYLSNRN--FI  135 (273)
T ss_pred             CeeeEEeeeccC----CccccCcccEEEEeccCCCCHHHHHHHhhccCCcccCCHHHHHHHHHHHHHHHHHHHhCC--ee
Confidence            999999876320    00012234789999999999998875432  12345899999999999999999999988  99


Q ss_pred             ecCCCCCcEEEecCCCCCCceEEeeccceeecc
Q 024842          184 HNDVKPGNILITCRKGQPPLAILMDFGSARPAQ  216 (262)
Q Consensus       184 H~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~  216 (262)
                      |+||||+||+++.++    .+||+|||++....
T Consensus       136 H~dlkp~Nil~~~~~----~~kl~dfg~~~~~~  164 (273)
T cd05035         136 HRDLAARNCMLREDM----TVCVADFGLSKKIY  164 (273)
T ss_pred             ccccchheEEECCCC----eEEECCccceeecc
Confidence            999999999998765    69999999998654

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu

>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

Probab=99.96  E-value=1.1e-28  Score=198.62  Aligned_cols=186  Identities=19%  Similarity=0.243  Sum_probs=140.6

Q ss_pred             EEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccch-HHHHHHHHHHHHhhhCCCCCccch
Q 024842           32 RQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNN-EQLEMVREEIRVSSLFSHRNLLPL  110 (262)
Q Consensus        32 ~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~  110 (262)
                      +.||+|++|.||+|.+...+.                   ....+++|.+..... ...+.+..|+.+++.++||||+++
T Consensus         1 ~~ig~g~~~~v~~~~~~~~~~-------------------~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~   61 (257)
T cd05040           1 KKLGDGSFGVVRRGEWSTSGG-------------------KVIPVAVKCLKSDKLSDIMDDFLKEAAIMHSLDHENLIRL   61 (257)
T ss_pred             CcCCccCcccEEeeeEecCCC-------------------CceEEEEeecCCcccHHHHHHHHHHHHHHhhcCCCCccce
Confidence            368999999999999865322                   112578888776655 567789999999999999999999


Q ss_pred             hhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeeecCCCCC
Q 024842          111 LDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPG  190 (262)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~dikp~  190 (262)
                      ++.+.          . ...+++||++.+++|.+++.....  ..+++..++.++.|++.||.|||+.+  ++|+||+|+
T Consensus        62 ~~~~~----------~-~~~~~v~e~~~~~~L~~~l~~~~~--~~~~~~~~~~~~~qi~~~L~~lH~~~--i~H~di~p~  126 (257)
T cd05040          62 YGVVL----------T-HPLMMVTELAPLGSLLDRLRKDAL--GHFLISTLCDYAVQIANGMRYLESKR--FIHRDLAAR  126 (257)
T ss_pred             eEEEc----------C-CeEEEEEEecCCCcHHHHHHhccc--ccCcHHHHHHHHHHHHHHHHHHHhCC--ccccccCcc
Confidence            98873          2 678999999999999998864221  45899999999999999999999988  999999999


Q ss_pred             cEEEecCCCCCCceEEeeccceeeccccC--------ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheeccc
Q 024842          191 NILITCRKGQPPLAILMDFGSARPAQSKF--------ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMF  260 (262)
Q Consensus       191 Nill~~~~~~~~~~kl~Dfg~a~~~~~~~--------~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~  260 (262)
                      ||+++.++    .++|+|||++.......        ..++..|.+||.+.+..     ....+|+|++|+++++|++
T Consensus       127 nil~~~~~----~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~-----~~~~~Di~slG~~l~el~t  195 (257)
T cd05040         127 NILLASDD----KVKIGDFGLMRALPQNEDHYVMEEHLKVPFAWCAPESLRTRT-----FSHASDVWMFGVTLWEMFT  195 (257)
T ss_pred             cEEEecCC----EEEeccccccccccccccceecccCCCCCceecCHHHhcccC-----cCchhhhHHHHHHHHHHHh
Confidence            99998776    79999999988764421        12233455555332111     1123566666666666665

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and

>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.96  E-value=9.6e-29  Score=199.08  Aligned_cols=197  Identities=17%  Similarity=0.140  Sum_probs=137.6

Q ss_pred             EEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCCCCCccchh
Q 024842           32 RQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSHRNLLPLL  111 (262)
Q Consensus        32 ~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~  111 (262)
                      +.||+|+||.||+|.+..++.......            .....+++|........ ...+.+|+.+++.++|||+++++
T Consensus         1 ~~lg~G~~~~v~~~~~~~~~~~~~~~~------------~~~~~v~~k~~~~~~~~-~~~~~~e~~~l~~l~h~~i~~~~   67 (259)
T cd05037           1 EHLGQGTFTNIYKGVLRVQSDLDIVGP------------GQEVSVVLKVLGSDHRD-SLAFFETASLMSQLSHKHLVKLY   67 (259)
T ss_pred             CcccccccceEEEEEEeccCCccccCC------------ccceeeeeeccccchhh-HHHHHHHHHHHHcCCCcchhhee
Confidence            368999999999999886652110000            01124666665544333 57788999999999999999999


Q ss_pred             hhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeeecCCCCCc
Q 024842          112 DHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGN  191 (262)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~dikp~N  191 (262)
                      +.+.          . ...+++|||+.+++|.+++..   ....+++..+..++.|++.||.|||+++  ++|+||||+|
T Consensus        68 ~~~~----------~-~~~~lv~e~~~~~~L~~~l~~---~~~~~~~~~~~~~~~~i~~~l~~LH~~~--i~H~dlkp~N  131 (259)
T cd05037          68 GVCV----------R-DENIMVEEYVKFGPLDVFLHR---EKNNVSLHWKLDVAKQLASALHYLEDKK--LVHGNVCGKN  131 (259)
T ss_pred             eEEe----------c-CCcEEEEEcCCCCcHHHHHHh---hccCCCHHHHHHHHHHHHHHHHHHhhCC--eecccCccce
Confidence            8763          2 557999999999999988763   2225899999999999999999999988  9999999999


Q ss_pred             EEEecCCC---CCCceEEeeccceeecccc-CccCcccCCcccchhhhhhhhhhhhhcCcccchheeheeccc
Q 024842          192 ILITCRKG---QPPLAILMDFGSARPAQSK-FALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMF  260 (262)
Q Consensus       192 ill~~~~~---~~~~~kl~Dfg~a~~~~~~-~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~  260 (262)
                      |+++.++.   ..+.++|+|||++...... ...+...|.+||.+....   .......|+|++|+++++|++
T Consensus       132 ill~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~y~aPE~~~~~~---~~~~~~~Di~slG~~~~~l~~  201 (259)
T cd05037         132 ILVARYGLNEGYVPFIKLSDPGIPITVLSREERVERIPWIAPECIRNGQ---ASLTIAADKWSFGTTLLEICS  201 (259)
T ss_pred             EEEecCccccCCceeEEeCCCCcccccccccccccCCCccChhhhcCCC---CCcchhhHHHHHHHHHHHHHh
Confidence            99986651   2336999999998865432 222334455555432211   011122456666666666555

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki

>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

Probab=99.96  E-value=1.4e-28  Score=201.99  Aligned_cols=199  Identities=21%  Similarity=0.295  Sum_probs=143.8

Q ss_pred             CceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc--hHHHHHHHHHHHHhhhCC
Q 024842           26 NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN--NEQLEMVREEIRVSSLFS  103 (262)
Q Consensus        26 ~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~--~~~~~~~~~E~~~l~~l~  103 (262)
                      ++|++.+.||+|+||.||+|.+..+++                      .+++|......  ......+.+|+.+++.+.
T Consensus         1 ~~y~~~~~lg~g~~g~vy~~~~~~~~~----------------------~v~lK~~~~~~~~~~~~~~~~~E~~~l~~l~   58 (295)
T cd07837           1 DAYEKLEKIGEGTYGKVYKARDKNTGK----------------------LVALKKTRLEMDEEGIPPTALREISLLQMLS   58 (295)
T ss_pred             CCceEeeEecccCCeEEEEEEECCCCc----------------------EEEEEeehhhccccCCchHHHHHHHHHHHcc
Confidence            479999999999999999999887655                      56777654432  222356778999999995


Q ss_pred             -CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhc-CCCCCHHHHHHHHHHHHHHHHHHHcCCCC
Q 024842          104 -HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTK-KEFFSTSDVLQIFYQICAGLKHMHSLEPP  181 (262)
Q Consensus       104 -h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~-~~~~~~~~~~~i~~ql~~~l~~lH~~~~~  181 (262)
                       |||++++++.+...     ........|++|+|+.+ +|.+++...... ...+++..++.++.|++.||.|||+.+  
T Consensus        59 ~~~~i~~~~~~~~~~-----~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~LH~~~--  130 (295)
T cd07837          59 ESIYIVRLLDVEHVE-----EKNGKPSLYLVFEYLDS-DLKKFMDSNGRGPGRPLPAKTIKSFMYQLLKGVAHCHKHG--  130 (295)
T ss_pred             CCCCccceeeeEeec-----CCCCCceEEEEeeccCc-CHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHCC--
Confidence             69999999877320     01122347999999875 788877543222 346899999999999999999999998  


Q ss_pred             eeecCCCCCcEEEec-CCCCCCceEEeeccceeeccccCc-----cCcccCCcccchhhhhhhhhhhhhcCcccchheeh
Q 024842          182 YAHNDVKPGNILITC-RKGQPPLAILMDFGSARPAQSKFA-----LGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILM  255 (262)
Q Consensus       182 ivH~dikp~Nill~~-~~~~~~~~kl~Dfg~a~~~~~~~~-----~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~  255 (262)
                      ++||||+|+||+++. ++    .++|+|||++.....+..     .+++.|.+||.+....    ......|+|++|+++
T Consensus       131 i~H~dl~~~nil~~~~~~----~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~----~~~~~~Di~slG~~l  202 (295)
T cd07837         131 VMHRDLKPQNLLVDKQKG----LLKIADLGLGRAFSIPVKSYTHEIVTLWYRAPEVLLGST----HYSTPVDIWSVGCIF  202 (295)
T ss_pred             eeecCCChHHEEEecCCC----eEEEeecccceecCCCccccCCcccccCCCChHHhhCCC----CCCchHHHHHHHHHH
Confidence            999999999999986 44    699999999876543211     2344455555442110    112246778888877


Q ss_pred             eecccCC
Q 024842          256 RELMFGR  262 (262)
Q Consensus       256 ~~l~~G~  262 (262)
                      |+|++|+
T Consensus       203 ~~l~~g~  209 (295)
T cd07837         203 AEMSRKQ  209 (295)
T ss_pred             HHHHcCC
Confidence            7777763

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm

>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

Probab=99.96  E-value=1.6e-28  Score=205.93  Aligned_cols=201  Identities=21%  Similarity=0.298  Sum_probs=147.8

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCCC
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSH  104 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~h  104 (262)
                      ..+|.+.+.||.|+||.||+|.+..+++                      .+++|++........+.+.+|+.+++.++|
T Consensus         4 ~~~y~~~~~Lg~g~~g~vy~~~~~~~~~----------------------~v~iK~i~~~~~~~~~~~~~Ei~~l~~l~h   61 (342)
T cd07854           4 GSRYMDLRPLGCGSNGLVFSAVDSDCDK----------------------RVAVKKIVLTDPQSVKHALREIKIIRRLDH   61 (342)
T ss_pred             CcceEEEEEecCCCCEEEEEEEECCCCc----------------------EEEEEEEecCCCchHHHHHHHHHHHHhcCC
Confidence            4789999999999999999999887655                      677777766555556778899999999999


Q ss_pred             CCccchhhhhHHHhhhc----cCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCC
Q 024842          105 RNLLPLLDHAIIAVKAN----QEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEP  180 (262)
Q Consensus       105 ~~i~~~~~~~~~~~~~~----~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~  180 (262)
                      |||+++++.+.......    .........+++|||+. ++|.+++.     ...+++..++.++.|++.||.|||+.+ 
T Consensus        62 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~~~-----~~~l~~~~~~~~~~qi~~aL~~LH~~g-  134 (342)
T cd07854          62 DNIVKVYEVLGPSGSDLTEDVGSLTELNSVYIVQEYME-TDLANVLE-----QGPLSEEHARLFMYQLLRGLKYIHSAN-  134 (342)
T ss_pred             CcchhhHhhhcccccccccccccccccceEEEEeeccc-ccHHHHHH-----cCCCCHHHHHHHHHHHHHHHHHHHhCC-
Confidence            99999998764210000    00011235789999886 57877663     235899999999999999999999998 


Q ss_pred             CeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC--------ccCcccCCcccchhhhhhhhhhhhhcCcccchh
Q 024842          181 PYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF--------ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQ  252 (262)
Q Consensus       181 ~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~--------~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g  252 (262)
                       ++||||||+||+++.++.   .++|+|||.+.......        ..++..|.+||.+....    ......|+||+|
T Consensus       135 -ivH~dikp~Nili~~~~~---~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~----~~~~~~DiwSlG  206 (342)
T cd07854         135 -VLHRDLKPANVFINTEDL---VLKIGDFGLARIVDPHYSHKGYLSEGLVTKWYRSPRLLLSPN----NYTKAIDMWAAG  206 (342)
T ss_pred             -cccCCCCHHHEEEcCCCc---eEEECCcccceecCCccccccccccccccccccCHHHHhCcc----ccCchhhHHHHH
Confidence             999999999999975432   58999999997653321        12344566666432211    112246888888


Q ss_pred             eeheecccCC
Q 024842          253 ILMRELMFGR  262 (262)
Q Consensus       253 ~~~~~l~~G~  262 (262)
                      +++++|++|+
T Consensus       207 vil~el~~g~  216 (342)
T cd07854         207 CIFAEMLTGK  216 (342)
T ss_pred             HHHHHHHhCC
Confidence            8888888775

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi

>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

Probab=99.96  E-value=7.5e-28  Score=195.26  Aligned_cols=194  Identities=19%  Similarity=0.241  Sum_probs=144.9

Q ss_pred             eecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc-hHHHHHHHHHHHHhh
Q 024842           22 WINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN-NEQLEMVREEIRVSS  100 (262)
Q Consensus        22 ~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~-~~~~~~~~~E~~~l~  100 (262)
                      .+..++|.+.+.||+|+||.||+|.+.....                   ....+++|...... ....+.+.+|+.+++
T Consensus         2 ~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~-------------------~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~   62 (270)
T cd05056           2 EIQREDITLGRCIGEGQFGDVYQGVYMSPEN-------------------EKIAVAVKTCKNCTSPSVREKFLQEAYIMR   62 (270)
T ss_pred             eechhhceeeeeeCCccceeEEEEEEecCCC-------------------CCcceEEEecCCcCCHHHHHHHHHHHHHHH
Confidence            3557789999999999999999998754311                   12357888776554 445678899999999


Q ss_pred             hCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCC
Q 024842          101 LFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEP  180 (262)
Q Consensus       101 ~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~  180 (262)
                      .++|||++++++.+.           ....+++||++.+++|.+++..   ....+++..++.++.|++.||.|||+.+ 
T Consensus        63 ~~~h~~i~~~~~~~~-----------~~~~~lv~e~~~~~~L~~~l~~---~~~~~~~~~~~~~~~~l~~~l~~lH~~~-  127 (270)
T cd05056          63 QFDHPHIVKLIGVIT-----------ENPVWIVMELAPLGELRSYLQV---NKYSLDLASLILYSYQLSTALAYLESKR-  127 (270)
T ss_pred             hCCCCchhceeEEEc-----------CCCcEEEEEcCCCCcHHHHHHh---CCCCCCHHHHHHHHHHHHHHHHHHHhCC-
Confidence            999999999998762           2457899999999999998853   2335899999999999999999999988 


Q ss_pred             CeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccCc------cCcccCCcccchhhhhhhhhhhhhcCcccchhee
Q 024842          181 PYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKFA------LGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQIL  254 (262)
Q Consensus       181 ~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~~------~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~  254 (262)
                       ++|+||||+||+++.++    .++|+|||++........      .....|.+||.+-.-+     .....|+|++|++
T Consensus       128 -~~H~dl~p~nili~~~~----~~~l~d~g~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-----~~~~~Di~slG~i  197 (270)
T cd05056         128 -FVHRDIAARNVLVSSPD----CVKLGDFGLSRYLEDESYYKASKGKLPIKWMAPESINFRR-----FTSASDVWMFGVC  197 (270)
T ss_pred             -eeccccChheEEEecCC----CeEEccCceeeecccccceecCCCCccccccChhhhccCC-----CCchhhhHHHHHH
Confidence             99999999999998766    699999999876543211      1223466666332111     1123566666666


Q ss_pred             heecc
Q 024842          255 MRELM  259 (262)
Q Consensus       255 ~~~l~  259 (262)
                      +++++
T Consensus       198 l~el~  202 (270)
T cd05056         198 MWEIL  202 (270)
T ss_pred             HHHHH
Confidence            66654

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions

>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

Probab=99.96  E-value=2.7e-28  Score=195.97  Aligned_cols=193  Identities=24%  Similarity=0.393  Sum_probs=152.3

Q ss_pred             ceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc--hHHHHHHHHHHHHhhhCCC
Q 024842           27 RYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN--NEQLEMVREEIRVSSLFSH  104 (262)
Q Consensus        27 ~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~--~~~~~~~~~E~~~l~~l~h  104 (262)
                      +|++.+.||.|++|.||++.+..+++                      .+++|++....  ....+.+.+|+++++.++|
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~----------------------~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~   58 (258)
T cd08215           1 KYEIIKQIGKGSFGKVYLVRRKSDGK----------------------LYVLKEIDLSNMSEKEREDALNEVKILKKLNH   58 (258)
T ss_pred             CceEEeeeccCCCeEEEEEEEcCCCc----------------------EEEEEEeecccCChHHHHHHHHHHHHHHhcCC
Confidence            58999999999999999999876544                      67788776543  3556778899999999999


Q ss_pred             CCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeee
Q 024842          105 RNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAH  184 (262)
Q Consensus       105 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH  184 (262)
                      ||++++.+.+.          .....+++++++.+++|.+++.........+++..++.++.+++.||.+||+.+  ++|
T Consensus        59 ~~~~~~~~~~~----------~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~--~~H  126 (258)
T cd08215          59 PNIIKYYESFE----------EKGKLCIVMEYADGGDLSQKIKKQKKEGKPFPEEQILDWFVQLCLALKYLHSRK--ILH  126 (258)
T ss_pred             CChhheEEEEe----------cCCEEEEEEEecCCCcHHHHHHHhhccCCCcCHHHHHHHHHHHHHHHHHHHhCC--Eec
Confidence            99999998873          247899999999999999988754333467999999999999999999999998  999


Q ss_pred             cCCCCCcEEEecCCCCCCceEEeeccceeeccccC-----ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecc
Q 024842          185 NDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELM  259 (262)
Q Consensus       185 ~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~  259 (262)
                      +||+|+||+++.++    .++|+|||.+.......     ..+++.|.+|+......     .....|+|++|+++++|+
T Consensus       127 ~dl~~~nil~~~~~----~~~l~d~~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~-----~~~~~Dv~slG~~~~~l~  197 (258)
T cd08215         127 RDIKPQNIFLTSNG----LVKLGDFGISKVLSSTVDLAKTVVGTPYYLSPELCQNKP-----YNYKSDIWSLGCVLYELC  197 (258)
T ss_pred             ccCChHHeEEcCCC----cEEECCccceeecccCcceecceeeeecccChhHhccCC-----CCccccHHHHHHHHHHHH
Confidence            99999999998765    69999999998765432     23455566666443222     122467777777777777


Q ss_pred             cCC
Q 024842          260 FGR  262 (262)
Q Consensus       260 ~G~  262 (262)
                      +|+
T Consensus       198 ~g~  200 (258)
T cd08215         198 TLK  200 (258)
T ss_pred             cCC
Confidence            664

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They

>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

Probab=99.96  E-value=8.6e-29  Score=202.00  Aligned_cols=204  Identities=19%  Similarity=0.247  Sum_probs=150.4

Q ss_pred             cCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhC-
Q 024842           24 NENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLF-  102 (262)
Q Consensus        24 ~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l-  102 (262)
                      ..+.|++.+.||.|+||.||+|.+..+++                      .+++|...... .....+..|+.+++.+ 
T Consensus        14 ~~~~~~~~~~lg~g~~~~v~~~~~~~~~~----------------------~~a~K~~~~~~-~~~~~~~~e~~~l~~~~   70 (282)
T cd06636          14 PAGIFELVEVVGNGTYGQVYKGRHVKTGQ----------------------LAAIKVMDVTE-DEEEEIKLEINMLKKYS   70 (282)
T ss_pred             hhhhhhhheeeccCCCeEEEEEEEcCCCc----------------------EEEEEEEecCh-HHHHHHHHHHHHHHHhc
Confidence            35689999999999999999999876544                      57777664433 2335677888888888 


Q ss_pred             CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCe
Q 024842          103 SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPY  182 (262)
Q Consensus       103 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~i  182 (262)
                      +|+|++++++.+...    .........+++|||+.+++|.+++....  ...+++..++.++.|++.||.|||+.+  +
T Consensus        71 ~h~~i~~~~~~~~~~----~~~~~~~~~~iv~e~~~~~~L~~~~~~~~--~~~~~~~~~~~~~~qi~~al~~LH~~~--i  142 (282)
T cd06636          71 HHRNIATYYGAFIKK----SPPGHDDQLWLVMEFCGAGSVTDLVKNTK--GNALKEDWIAYICREILRGLAHLHAHK--V  142 (282)
T ss_pred             CCCcEEEEeeehhcc----cccCCCCEEEEEEEeCCCCcHHHHHHHcc--CCCCCHHHHHHHHHHHHHHHHHHHHCC--c
Confidence            699999999987521    01123467899999999999999886422  345889999999999999999999998  9


Q ss_pred             eecCCCCCcEEEecCCCCCCceEEeeccceeecccc-----CccCcccCCcccchhhhhhhhhhhhhcCcccchheehee
Q 024842          183 AHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSK-----FALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRE  257 (262)
Q Consensus       183 vH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~-----~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~  257 (262)
                      +|+||+|+||+++.++    .++|+|||++......     ...++..|.+||.+..-...........|+|++|+++|+
T Consensus       143 vH~dl~~~nili~~~~----~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~l~~~~~~~~~~~~~~DvwslG~~l~e  218 (282)
T cd06636         143 IHRDIKGQNVLLTENA----EVKLVDFGVSAQLDRTVGRRNTFIGTPYWMAPEVIACDENPDATYDYRSDIWSLGITAIE  218 (282)
T ss_pred             ccCCCCHHHEEECCCC----CEEEeeCcchhhhhccccCCCcccccccccCHhhcCcccCcCcCCCcccchhHHHHHHHH
Confidence            9999999999998766    6999999998754321     123555677766442111001111224678888888888


Q ss_pred             cccCC
Q 024842          258 LMFGR  262 (262)
Q Consensus       258 l~~G~  262 (262)
                      |++|+
T Consensus       219 l~~g~  223 (282)
T cd06636         219 MAEGA  223 (282)
T ss_pred             HHhCC
Confidence            77774

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea

>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]

Probab=99.96  E-value=3.3e-29  Score=205.32  Aligned_cols=206  Identities=23%  Similarity=0.313  Sum_probs=154.8

Q ss_pred             ccCCCCCceeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHH
Q 024842           13 DSVNGGGDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMV   92 (262)
Q Consensus        13 ~~~~~~~~~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~   92 (262)
                      +.....+....+....++.+.||+|+||.||+|...                        ++.||||++...+.   +.+
T Consensus       197 d~~~~~sspl~~l~pl~l~eli~~Grfg~V~KaqL~------------------------~~~VAVKifp~~~k---qs~  249 (534)
T KOG3653|consen  197 DSGPAPSSPLLELDPLQLLELIGRGRFGCVWKAQLD------------------------NRLVAVKIFPEQEK---QSF  249 (534)
T ss_pred             CCCCCCCcccccCCchhhHHHhhcCccceeehhhcc------------------------CceeEEEecCHHHH---HHH
Confidence            344445555666788999999999999999999865                        34899999876654   445


Q ss_pred             HHHHHHhh--hCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHH
Q 024842           93 REEIRVSS--LFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICA  170 (262)
Q Consensus        93 ~~E~~~l~--~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~  170 (262)
                      .+|-++.+  .++|+||+++++.-..      -.......++|++|.+.|+|.++++     ...+++....+++..+++
T Consensus       250 ~~Ek~Iy~lp~m~h~nIl~Fi~~ekr------~t~~~~eywLVt~fh~kGsL~dyL~-----~ntisw~~~cria~Smar  318 (534)
T KOG3653|consen  250 QNEKNIYSLPGMKHENILQFIGAEKR------GTADRMEYWLVTEFHPKGSLCDYLK-----ANTISWNSLCRIAESMAR  318 (534)
T ss_pred             HhHHHHHhccCccchhHHHhhchhcc------CCccccceeEEeeeccCCcHHHHHH-----hccccHHHHHHHHHHHHH
Confidence            56666544  5689999999986421      1122457999999999999999995     455999999999999999


Q ss_pred             HHHHHHcC-------CCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-------ccCcccCCcccchhhhh
Q 024842          171 GLKHMHSL-------EPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-------ALGQRRYSCRNGLLSIV  236 (262)
Q Consensus       171 ~l~~lH~~-------~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-------~~~~~~~~~~~d~~s~g  236 (262)
                      ||+|||+.       .++|+|||||..|||+..|.    .+.|+|||+|..+.+..       ..|+..|++||-+-+.-
T Consensus       319 GLa~LHee~p~~d~~Kp~IaHRDlkSkNVLvK~Dl----TccIaDFGLAl~~~p~~~~~d~~~qVGT~RYMAPEvLEgai  394 (534)
T KOG3653|consen  319 GLAHLHEELPRGDHHKPPIAHRDLKSKNVLVKNDL----TCCIADFGLALRLEPGKPQGDTHGQVGTRRYMAPEVLEGAI  394 (534)
T ss_pred             HHHHhcccCCcCCCCCCccccccccccceEEccCC----cEEeeccceeEEecCCCCCcchhhhhhhhhhcCHHHHhhhc
Confidence            99999973       25899999999999999888    69999999999876433       36888999998553321


Q ss_pred             hhh-hhhhhcCcccchheeheeccc
Q 024842          237 LHL-SELLSCGTVRVIQILMRELMF  260 (262)
Q Consensus       237 ~~~-~e~~~~~~v~~~g~~~~~l~~  260 (262)
                      -.. .+-+..-|||+.|+++|||++
T Consensus       395 nl~d~~Afkr~DvYamgLVLWEi~S  419 (534)
T KOG3653|consen  395 NLQDRDAFKRIDVYAMGLVLWEIAS  419 (534)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHh
Confidence            111 233334566666666666543

>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

Probab=99.96  E-value=4.8e-29  Score=205.08  Aligned_cols=188  Identities=18%  Similarity=0.257  Sum_probs=146.0

Q ss_pred             ceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCCCCC
Q 024842           27 RYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSHRN  106 (262)
Q Consensus        27 ~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~h~~  106 (262)
                      .|.....||+|+||.||++.+..+++                      .+++|.+........+.+.+|+.+++.++|||
T Consensus        22 ~~~~~~~ig~g~~g~v~~~~~~~~~~----------------------~v~iK~~~~~~~~~~~~~~~e~~~l~~l~hp~   79 (297)
T cd06659          22 LLENYIKIGEGSTGIVCIAREKHSGR----------------------QVAVKMMDLRKQQRRELLFNEVVIMRDYQHQN   79 (297)
T ss_pred             hHHhhhhcCCCCceeEEEEEEcCCCC----------------------EEEEEEEEecccchHHHHHHHHHHHHhCCCCc
Confidence            34556689999999999999876544                      67777765544444567888999999999999


Q ss_pred             ccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeeecC
Q 024842          107 LLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHND  186 (262)
Q Consensus       107 i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~d  186 (262)
                      ++++++.+          ......++++|++.+++|.+++.     ...+++..++.++.|++.||.|||+++  ++|+|
T Consensus        80 i~~~~~~~----------~~~~~~~iv~e~~~~~~L~~~~~-----~~~~~~~~~~~~~~qi~~~L~~LH~~~--ivH~d  142 (297)
T cd06659          80 VVEMYKSY----------LVGEELWVLMEFLQGGALTDIVS-----QTRLNEEQIATVCESVLQALCYLHSQG--VIHRD  142 (297)
T ss_pred             hhhhhhhe----------eeCCeEEEEEecCCCCCHHHHHh-----hcCCCHHHHHHHHHHHHHHHHHHHhCC--eecCC
Confidence            99999987          33677999999999999988663     244899999999999999999999998  99999


Q ss_pred             CCCCcEEEecCCCCCCceEEeeccceeeccccC-----ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecccC
Q 024842          187 VKPGNILITCRKGQPPLAILMDFGSARPAQSKF-----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMFG  261 (262)
Q Consensus       187 ikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~G  261 (262)
                      |+|+||+++.++    .++|+|||++.......     ..++..|.+||.+....     .....|+|++|+++++|++|
T Consensus       143 l~p~Nill~~~~----~~kL~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-----~~~~~Dv~slG~il~el~~g  213 (297)
T cd06659         143 IKSDSILLTLDG----RVKLSDFGFCAQISKDVPKRKSLVGTPYWMAPEVISRTP-----YGTEVDIWSLGIMVIEMVDG  213 (297)
T ss_pred             CCHHHeEEccCC----cEEEeechhHhhcccccccccceecCccccCHHHHccCC-----CCchhhHHHHHHHHHHHHhC
Confidence            999999998776    69999999987543321     23555677766543221     12246777777777777776


Q ss_pred             C
Q 024842          262 R  262 (262)
Q Consensus       262 ~  262 (262)
                      +
T Consensus       214 ~  214 (297)
T cd06659         214 E  214 (297)
T ss_pred             C
Confidence            4

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i

>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

Probab=99.96  E-value=3.2e-28  Score=198.12  Aligned_cols=190  Identities=22%  Similarity=0.319  Sum_probs=147.8

Q ss_pred             CceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc---chHHHHHHHHHHHHhhhC
Q 024842           26 NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ---NNEQLEMVREEIRVSSLF  102 (262)
Q Consensus        26 ~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~---~~~~~~~~~~E~~~l~~l  102 (262)
                      ++|++.+.||+|++|.||++.+..+++                      .+++|.....   .....+.+.+|..+++.+
T Consensus         1 ~~y~~~~~lg~g~~~~vy~~~~~~~~~----------------------~~~ik~~~~~~~~~~~~~~~~~~e~~~~~~l   58 (280)
T cd05581           1 DDFKFGKIIGEGSFSTVVLAKEKETNK----------------------EYAIKILDKRQLIKEKKVKYVKIEKEVLTRL   58 (280)
T ss_pred             CCceEeeeecCCCceEEEEEEEcCCCC----------------------EEEEEEechHhccchHHHHHHHHHHHHHHhc
Confidence            479999999999999999999876655                      5666655432   223346678899999999


Q ss_pred             C-CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCC
Q 024842          103 S-HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPP  181 (262)
Q Consensus       103 ~-h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~  181 (262)
                      + ||||+++++.+          ......+++|+++.+++|.+++.    ....+++..++.++.|++.||.+||+.+  
T Consensus        59 ~~~~~i~~~~~~~----------~~~~~~~lv~e~~~~~~L~~~l~----~~~~l~~~~~~~i~~ql~~~l~~Lh~~~--  122 (280)
T cd05581          59 NGHPGIIKLYYTF----------QDEENLYFVLEYAPNGELLQYIR----KYGSLDEKCTRFYAAEILLALEYLHSKG--  122 (280)
T ss_pred             ccCCCchhHHHHh----------cCCceEEEEEcCCCCCcHHHHHH----HcCCCCHHHHHHHHHHHHHHHHHHHHCC--
Confidence            8 99999999987          33567999999999999999886    3446999999999999999999999998  


Q ss_pred             eeecCCCCCcEEEecCCCCCCceEEeeccceeeccccCc-------------------------cCcccCCcccchhhhh
Q 024842          182 YAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKFA-------------------------LGQRRYSCRNGLLSIV  236 (262)
Q Consensus       182 ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~~-------------------------~~~~~~~~~~d~~s~g  236 (262)
                      ++|+||+|+||+++.++    .++|+|||++........                         .++..|.+||.+....
T Consensus       123 ~~H~dl~~~ni~i~~~~----~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~  198 (280)
T cd05581         123 IIHRDLKPENILLDKDM----HIKITDFGTAKVLDPNSSPESNKGDATNIDSQIEKNRRRFASFVGTAEYVSPELLNEKP  198 (280)
T ss_pred             eeecCCCHHHeEECCCC----CEEecCCccccccCCccccccCCCCCccccccccccccccccccCCccccCHHHhCCCC
Confidence            99999999999998776    699999999886543221                         2334455555332211


Q ss_pred             hhhhhhhhcCcccchheeheecccCC
Q 024842          237 LHLSELLSCGTVRVIQILMRELMFGR  262 (262)
Q Consensus       237 ~~~~e~~~~~~v~~~g~~~~~l~~G~  262 (262)
                           .....|+|++|++++++++|+
T Consensus       199 -----~~~~~Di~slG~~l~~l~~g~  219 (280)
T cd05581         199 -----AGKSSDLWALGCIIYQMLTGK  219 (280)
T ss_pred             -----CChhhhHHHHHHHHHHHHhCC
Confidence                 222467888888888887774

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto

>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

Probab=99.96  E-value=1.4e-28  Score=200.87  Aligned_cols=191  Identities=23%  Similarity=0.330  Sum_probs=146.4

Q ss_pred             ceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc--hHHHHHHHHHHHHhhhCCC
Q 024842           27 RYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN--NEQLEMVREEIRVSSLFSH  104 (262)
Q Consensus        27 ~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~--~~~~~~~~~E~~~l~~l~h  104 (262)
                      +|+..+.||.|++|.||+|++..+++                      .+++|++....  ......+.+|+++++.++|
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~----------------------~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~h   58 (284)
T cd07860           1 NFQKVEKIGEGTYGVVYKARNKLTGE----------------------VVALKKIRLDTETEGVPSTAIREISLLKELNH   58 (284)
T ss_pred             CceeeeeecCCCceEEEEEEECCCCC----------------------EEEEEEccccccccccchHHHHHHHHHHhcCC
Confidence            58999999999999999999876654                      56777665332  2223567889999999999


Q ss_pred             CCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeee
Q 024842          105 RNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAH  184 (262)
Q Consensus       105 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH  184 (262)
                      |||+++++.+          ......+++|||+. ++|.+++...  ....+++..++.++.|++.||+|||+.+  ++|
T Consensus        59 ~~i~~~~~~~----------~~~~~~~~v~e~~~-~~l~~~~~~~--~~~~l~~~~~~~~~~~i~~~l~~lh~~~--i~H  123 (284)
T cd07860          59 PNIVKLLDVI----------HTENKLYLVFEFLH-QDLKKFMDAS--PLSGIPLPLIKSYLFQLLQGLAFCHSHR--VLH  123 (284)
T ss_pred             CCCcchhhhc----------ccCCcEEEEeeccc-cCHHHHHHhC--CCCCCCHHHHHHHHHHHHHHHHHHHHCC--eec
Confidence            9999999987          33567899999985 5787776532  2345899999999999999999999988  999


Q ss_pred             cCCCCCcEEEecCCCCCCceEEeeccceeeccccC-----ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecc
Q 024842          185 NDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELM  259 (262)
Q Consensus       185 ~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~  259 (262)
                      +||+|+||+++.++    .++|+|||++.......     ..++..|.+||.+..-..    ....+|+|++|+++|+|+
T Consensus       124 ~~l~p~nill~~~~----~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~----~~~~~Dv~slG~il~~l~  195 (284)
T cd07860         124 RDLKPQNLLINTEG----AIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKY----YSTAVDIWSLGCIFAEMV  195 (284)
T ss_pred             CCCCHHHEEECCCC----CEEEeeccchhhcccCccccccccccccccCCeEEecCCC----CCcHHHHHHHHHHHHHHH
Confidence            99999999998776    69999999987654321     123455677775432111    112368888888888888


Q ss_pred             cCC
Q 024842          260 FGR  262 (262)
Q Consensus       260 ~G~  262 (262)
                      +|+
T Consensus       196 tg~  198 (284)
T cd07860         196 TRR  198 (284)
T ss_pred             HCC
Confidence            874

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex

>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

Probab=99.96  E-value=2.2e-28  Score=200.75  Aligned_cols=190  Identities=20%  Similarity=0.303  Sum_probs=148.1

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCCC
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSH  104 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~h  104 (262)
                      .++|++.+.||+|+||.||++.+..+++                      .+++|.+........+.+.+|+.+++.++|
T Consensus        18 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~----------------------~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h   75 (293)
T cd06647          18 KKKYTRFEKIGQGASGTVYTAIDVATGQ----------------------EVAIKQMNLQQQPKKELIINEILVMRENKH   75 (293)
T ss_pred             hhhceeeeEecCCCCeEEEEEEEcCCCC----------------------EEEEEEeccccchHHHHHHHHHHHHhhcCC
Confidence            4789999999999999999998765543                      677787655544455778899999999999


Q ss_pred             CCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeee
Q 024842          105 RNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAH  184 (262)
Q Consensus       105 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH  184 (262)
                      ||++++++.+.          .....|+++|++.+++|.+++.     ...+++..+..++.|++.||.|||+.+  ++|
T Consensus        76 p~i~~~~~~~~----------~~~~~~lv~e~~~~~~L~~~~~-----~~~l~~~~~~~i~~~l~~al~~LH~~g--i~H  138 (293)
T cd06647          76 PNIVNYLDSYL----------VGDELWVVMEYLAGGSLTDVVT-----ETCMDEGQIAAVCRECLQALEFLHSNQ--VIH  138 (293)
T ss_pred             CCeeehhheee----------eCCcEEEEEecCCCCcHHHHHh-----hcCCCHHHHHHHHHHHHHHHHHHHhCC--Eee
Confidence            99999998873          3567899999999999998874     234789999999999999999999998  999


Q ss_pred             cCCCCCcEEEecCCCCCCceEEeeccceeeccccC-----ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecc
Q 024842          185 NDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELM  259 (262)
Q Consensus       185 ~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~  259 (262)
                      +||+|+||+++.++    .++|+|||++.......     ..++..|.+|+.+..-     ......|+|++|+++++++
T Consensus       139 ~dL~p~Nili~~~~----~~kL~dfg~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~-----~~~~~~Dv~slG~ll~~ll  209 (293)
T cd06647         139 RDIKSDNILLGMDG----SVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRK-----AYGPKVDIWSLGIMAIEMV  209 (293)
T ss_pred             ccCCHHHEEEcCCC----CEEEccCcceecccccccccccccCChhhcCchhhccC-----CCCchhhHHHHHHHHHHHH
Confidence            99999999998766    69999999887554322     1344456666543221     1122367777777777777


Q ss_pred             cCC
Q 024842          260 FGR  262 (262)
Q Consensus       260 ~G~  262 (262)
                      +|+
T Consensus       210 ~g~  212 (293)
T cd06647         210 EGE  212 (293)
T ss_pred             hCC
Confidence            664

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi

>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

Probab=99.96  E-value=3.9e-29  Score=204.31  Aligned_cols=192  Identities=20%  Similarity=0.217  Sum_probs=149.1

Q ss_pred             cCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc-hHHHHHHHHHHHHhhhC
Q 024842           24 NENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN-NEQLEMVREEIRVSSLF  102 (262)
Q Consensus        24 ~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~-~~~~~~~~~E~~~l~~l  102 (262)
                      ..++|++.+.||+|++|.||++.+..+++                      .+++|...... ....+.+.+|+++++.+
T Consensus         3 ~~~~~~~~~~ig~g~~g~v~~~~~~~~~~----------------------~~a~k~~~~~~~~~~~~~~~~E~~~l~~l   60 (284)
T cd06620           3 RNEDLETISDLGAGNGGSVSKVKHIPTGT----------------------VMAKKVVHIGAKSSVRKQILRELQIMHEC   60 (284)
T ss_pred             cHHHHHHHHHcCCCCCeEEEEEEEcCCCc----------------------EEEEEEEEecCcchHHHHHHHHHHHHHHc
Confidence            35789999999999999999999876544                      56776654432 33456788999999999


Q ss_pred             CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHc-CCCC
Q 024842          103 SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHS-LEPP  181 (262)
Q Consensus       103 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~-~~~~  181 (262)
                      +||||+++++.+.          .....+++|||+.+++|.+++.    ....+++..++.++.+++.+|.|||+ .+  
T Consensus        61 ~h~~i~~~~~~~~----------~~~~~~lv~e~~~~~~L~~~~~----~~~~~~~~~~~~~~~~i~~~l~~LH~~~~--  124 (284)
T cd06620          61 RSPYIVSFYGAFL----------NENNICMCMEFMDCGSLDRIYK----KGGPIPVEILGKIAVAVVEGLTYLYNVHR--  124 (284)
T ss_pred             CCCCcceEeeeEe----------cCCEEEEEEecCCCCCHHHHHH----hccCCCHHHHHHHHHHHHHHHHHHHHhcC--
Confidence            9999999999873          3577999999999999988875    34568999999999999999999997 46  


Q ss_pred             eeecCCCCCcEEEecCCCCCCceEEeeccceeecccc---CccCcccCCcccchhhhhhhhhhhhhcCcccchheeheec
Q 024842          182 YAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSK---FALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMREL  258 (262)
Q Consensus       182 ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~---~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l  258 (262)
                      ++|+||+|+||+++.++    .++|+|||++......   ...++..|.+||.+...     ......|+|++|++++++
T Consensus       125 i~H~dl~p~nil~~~~~----~~~l~d~gl~~~~~~~~~~~~~~~~~~~aPE~~~~~-----~~~~~~Di~slG~~l~~l  195 (284)
T cd06620         125 IMHRDIKPSNILVNSRG----QIKLCDFGVSGELINSIADTFVGTSTYMSPERIQGG-----KYTVKSDVWSLGISIIEL  195 (284)
T ss_pred             eeccCCCHHHEEECCCC----cEEEccCCcccchhhhccCccccCcccCCHHHHccC-----CCCccchHHHHHHHHHHH
Confidence            99999999999998765    6999999998754321   22455666666654221     112246777777777777


Q ss_pred             ccCC
Q 024842          259 MFGR  262 (262)
Q Consensus       259 ~~G~  262 (262)
                      ++|+
T Consensus       196 ~tg~  199 (284)
T cd06620         196 ALGK  199 (284)
T ss_pred             HhCC
Confidence            7764

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

Probab=99.96  E-value=1.5e-28  Score=206.86  Aligned_cols=201  Identities=24%  Similarity=0.371  Sum_probs=150.0

Q ss_pred             CCceeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc--chHHHHHHHHH
Q 024842           18 GGDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ--NNEQLEMVREE   95 (262)
Q Consensus        18 ~~~~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~--~~~~~~~~~~E   95 (262)
                      ++..+...++|++.+.||+|+||.||+|.+..+++                      .+++|.+...  .......+.+|
T Consensus         8 ~~~~~~~~~~y~~~~~lg~g~~g~V~~~~~~~~~~----------------------~vaiK~~~~~~~~~~~~~~~~~E   65 (353)
T cd07850           8 GDSTFTVLKRYQNLKPIGSGAQGIVCAAYDTVTGQ----------------------NVAIKKLSRPFQNVTHAKRAYRE   65 (353)
T ss_pred             cchhhhhhcceEEEEEeccCCCEEEEEEEECCCCC----------------------EEEEEecCccccChhHHHHHHHH
Confidence            33344456889999999999999999999887655                      5777766432  33344567789


Q ss_pred             HHHhhhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHH
Q 024842           96 IRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHM  175 (262)
Q Consensus        96 ~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~l  175 (262)
                      +.+++.++||||+++++++....    ........|++||++. ++|.+.+.    ..  +++..++.++.|++.||+||
T Consensus        66 ~~~l~~l~h~~iv~~~~~~~~~~----~~~~~~~~~lv~e~~~-~~l~~~~~----~~--l~~~~~~~~~~ql~~aL~~L  134 (353)
T cd07850          66 LVLMKLVNHKNIIGLLNVFTPQK----SLEEFQDVYLVMELMD-ANLCQVIQ----MD--LDHERMSYLLYQMLCGIKHL  134 (353)
T ss_pred             HHHHHhcCCCCCcceeeeeccCC----CccccCcEEEEEeccC-CCHHHHHh----hc--CCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998774210    0012245799999885 47777654    22  88999999999999999999


Q ss_pred             HcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC----ccCcccCCcccchhhhhhhhhhhhhcCcccch
Q 024842          176 HSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVI  251 (262)
Q Consensus       176 H~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~  251 (262)
                      |+++  ++||||||+||+++.++    .++|+|||++.......    ..++..|++||.+...+     .....|+|++
T Consensus       135 H~~g--i~H~dlkp~Nil~~~~~----~~kL~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-----~~~~~Dvwsl  203 (353)
T cd07850         135 HSAG--IIHRDLKPSNIVVKSDC----TLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMG-----YKENVDIWSV  203 (353)
T ss_pred             HhCC--eeeCCCCHHHEEECCCC----CEEEccCccceeCCCCCCCCCCcccccccCHHHHhCCC-----CCCchhhHhH
Confidence            9998  99999999999998776    69999999998765432    23455677776542221     2234678888


Q ss_pred             heeheecccCC
Q 024842          252 QILMRELMFGR  262 (262)
Q Consensus       252 g~~~~~l~~G~  262 (262)
                      |+++++|++|+
T Consensus       204 G~~l~~l~~g~  214 (353)
T cd07850         204 GCIMGEMIRGT  214 (353)
T ss_pred             HHHHHHHHHCC
Confidence            88888887774

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK

>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

Probab=99.96  E-value=4.4e-28  Score=196.38  Aligned_cols=195  Identities=21%  Similarity=0.265  Sum_probs=146.5

Q ss_pred             ecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc-chHHHHHHHHHHHHhhh
Q 024842           23 INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ-NNEQLEMVREEIRVSSL  101 (262)
Q Consensus        23 ~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~-~~~~~~~~~~E~~~l~~  101 (262)
                      +..++|+..+.||+|++|.||+|++..+++.                   ...+++|..... .....+.+..|+++++.
T Consensus         2 i~~~~~~~~~~lg~g~~g~vy~~~~~~~~~~-------------------~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~   62 (268)
T cd05063           2 IHPSHITKQKVIGAGEFGEVFRGILKMPGRK-------------------EVAVAIKTLKPGYTEKQRQDFLSEASIMGQ   62 (268)
T ss_pred             CChHHceEeeEecCCCCccEEEEEEecCCCC-------------------ceEEEEEeccccCCHHHHHHHHHHHHHHhc
Confidence            4567899999999999999999998765431                   235778777554 23445678899999999


Q ss_pred             CCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCC
Q 024842          102 FSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPP  181 (262)
Q Consensus       102 l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~  181 (262)
                      ++|||++++.+.+          ...+..+++||++.+++|.+++..   ....+++..+..++.|++.||+|||+.+  
T Consensus        63 l~h~~i~~~~~~~----------~~~~~~~lv~e~~~~~~L~~~~~~---~~~~~~~~~~~~~~~~l~~al~~lH~~~--  127 (268)
T cd05063          63 FSHHNIIRLEGVV----------TKFKPAMIITEYMENGALDKYLRD---HDGEFSSYQLVGMLRGIAAGMKYLSDMN--  127 (268)
T ss_pred             CCCCCeeEEEEEE----------ccCCCcEEEEEcCCCCCHHHHHHh---cCCCCCHHHHHHHHHHHHHHHHHHHHCC--
Confidence            9999999999887          335678999999999999988752   3356899999999999999999999988  


Q ss_pred             eeecCCCCCcEEEecCCCCCCceEEeeccceeeccccCc--------cCcccCCcccchhhhhhhhhhhhhcCcccchhe
Q 024842          182 YAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKFA--------LGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQI  253 (262)
Q Consensus       182 ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~~--------~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~  253 (262)
                      ++|+||||+||+++.++    .++|+|||++........        .....|.+||.+..-     ......|+|++|+
T Consensus       128 i~H~dlkp~Nili~~~~----~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~-----~~~~~~Dv~slG~  198 (268)
T cd05063         128 YVHRDLAARNILVNSNL----ECKVSDFGLSRVLEDDPEGTYTTSGGKIPIRWTAPEAIAYR-----KFTSASDVWSFGI  198 (268)
T ss_pred             eeccccchhhEEEcCCC----cEEECCCccceecccccccceeccCCCcCceecCHHHhhcC-----CcChHhHHHHHHH
Confidence            99999999999998765    699999999876543211        111235555533111     1112356777777


Q ss_pred             eheeccc
Q 024842          254 LMRELMF  260 (262)
Q Consensus       254 ~~~~l~~  260 (262)
                      ++|+|++
T Consensus       199 il~ell~  205 (268)
T cd05063         199 VMWEVMS  205 (268)
T ss_pred             HHHHHHh
Confidence            7776654

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored

>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

Probab=99.96  E-value=4.7e-28  Score=198.33  Aligned_cols=161  Identities=18%  Similarity=0.267  Sum_probs=126.8

Q ss_pred             eecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc-hHHHHHHHHHHHHhh
Q 024842           22 WINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN-NEQLEMVREEIRVSS  100 (262)
Q Consensus        22 ~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~-~~~~~~~~~E~~~l~  100 (262)
                      .+..++|++.+.||+|+||.||+|......+                 ......+++|...... ......+.+|+.+++
T Consensus         2 ~~~~~~~~i~~~lg~G~~g~Vy~~~~~~~~~-----------------~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~   64 (288)
T cd05061           2 EVSREKITLLRELGQGSFGMVYEGNARDIIK-----------------GEAETRVAVKTVNESASLRERIEFLNEASVMK   64 (288)
T ss_pred             cccHHHceeeeeecCCCCcEEEEEEEeccCC-----------------CCcceEEEEEECCCcCCHHHHHHHHHHHHHHH
Confidence            3567899999999999999999997653211                 0123367888765442 233456778999999


Q ss_pred             hCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhc------CCCCCHHHHHHHHHHHHHHHHH
Q 024842          101 LFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTK------KEFFSTSDVLQIFYQICAGLKH  174 (262)
Q Consensus       101 ~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~------~~~~~~~~~~~i~~ql~~~l~~  174 (262)
                      .++|||++++++.+          ......+++|||+.+++|.+++......      ....+...+..++.|++.||.|
T Consensus        65 ~l~~~~i~~~~~~~----------~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~  134 (288)
T cd05061          65 GFTCHHVVRLLGVV----------SKGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIADGMAY  134 (288)
T ss_pred             hCCCCCeeeEEEEE----------cCCCCcEEEEeCCCCCCHHHHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999886          3356789999999999999998643211      1235677889999999999999


Q ss_pred             HHcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeec
Q 024842          175 MHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPA  215 (262)
Q Consensus       175 lH~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~  215 (262)
                      ||+++  ++||||||+||+++.++    .++|+|||++...
T Consensus       135 lH~~~--i~H~dikp~nili~~~~----~~~L~Dfg~~~~~  169 (288)
T cd05061         135 LNAKK--FVHRDLAARNCMVAHDF----TVKIGDFGMTRDI  169 (288)
T ss_pred             HHhCC--CcCCCCChheEEEcCCC----cEEECcCCccccc
Confidence            99988  99999999999998766    6999999998754

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta

>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

Probab=99.96  E-value=2.8e-28  Score=204.00  Aligned_cols=196  Identities=22%  Similarity=0.330  Sum_probs=147.8

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc--chHHHHHHHHHHHHhhhC
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ--NNEQLEMVREEIRVSSLF  102 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~--~~~~~~~~~~E~~~l~~l  102 (262)
                      .++|++.+.||+|+||.||++++..+++                      .+++|.+...  .......+.+|+.+++.+
T Consensus         4 ~~~y~~~~~lg~G~~~~vy~~~~~~~~~----------------------~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l   61 (337)
T cd07858           4 DTKYVPIKPIGRGAYGIVCSAKNSETNE----------------------KVAIKKIANAFDNRIDAKRTLREIKLLRHL   61 (337)
T ss_pred             ccceeEEEEeccCCCeEEEEEEecCCCC----------------------eEEEEEecccccccchhHHHHHHHHHHHhc
Confidence            5689999999999999999999876655                      5677765432  222345667899999999


Q ss_pred             CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCe
Q 024842          103 SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPY  182 (262)
Q Consensus       103 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~i  182 (262)
                      +|+||+++++.+...     ........+++++|+. ++|.+++.    ....+++..++.++.|++.||.|||+.+  +
T Consensus        62 ~h~ni~~~~~~~~~~-----~~~~~~~~~lv~e~~~-~~L~~~~~----~~~~l~~~~~~~i~~qi~~aL~~LH~~~--i  129 (337)
T cd07858          62 DHENVIAIKDIMPPP-----HREAFNDVYIVYELMD-TDLHQIIR----SSQTLSDDHCQYFLYQLLRGLKYIHSAN--V  129 (337)
T ss_pred             CCCCccchHHheecc-----cccccCcEEEEEeCCC-CCHHHHHh----cCCCCCHHHHHHHHHHHHHHHHHHHhCC--E
Confidence            999999999876421     0011235799999875 67877775    4456999999999999999999999998  9


Q ss_pred             eecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-----ccCcccCCcccchhhhhhhhhhhhhcCcccchheehee
Q 024842          183 AHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRE  257 (262)
Q Consensus       183 vH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~  257 (262)
                      +|+||||+||+++.++    .++|+|||++.......     ..++..|.+||.+.....    .-...|+|++|+++++
T Consensus       130 ~H~dlkp~Nil~~~~~----~~kL~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~----~~~~~DiwslG~il~~  201 (337)
T cd07858         130 LHRDLKPSNLLLNANC----DLKICDFGLARTTSEKGDFMTEYVVTRWYRAPELLLNCSE----YTTAIDVWSVGCIFAE  201 (337)
T ss_pred             ecCCCCHHHEEEcCCC----CEEECcCccccccCCCcccccccccccCccChHHHhcCCC----CCCcccHHHHHHHHHH
Confidence            9999999999998766    69999999998654331     234555666665432111    2234788888888888


Q ss_pred             cccCC
Q 024842          258 LMFGR  262 (262)
Q Consensus       258 l~~G~  262 (262)
                      |++|+
T Consensus       202 l~~g~  206 (337)
T cd07858         202 LLGRK  206 (337)
T ss_pred             HHcCC
Confidence            88774

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati

>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

Probab=99.96  E-value=6.9e-29  Score=202.08  Aligned_cols=189  Identities=21%  Similarity=0.271  Sum_probs=146.8

Q ss_pred             CceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc-chHHHHHHHHHHHHhhhCCC
Q 024842           26 NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ-NNEQLEMVREEIRVSSLFSH  104 (262)
Q Consensus        26 ~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~-~~~~~~~~~~E~~~l~~l~h  104 (262)
                      +.|+..+.||+|+||.||+|.+..+++                      .+++|.+... .....+.+.+|+.+++.++|
T Consensus         4 ~~y~~~~~l~~g~~~~vy~~~~~~~~~----------------------~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h   61 (277)
T cd06642           4 ELFTKLERIGKGSFGEVYKGIDNRTKE----------------------VVAIKIIDLEEAEDEIEDIQQEITVLSQCDS   61 (277)
T ss_pred             HHHHHHHHhcCCCCeeEEEEEEcCCCe----------------------EEEEEEeccccchHHHHHHHHHHHHHHcCCC
Confidence            356677889999999999999876544                      5777766533 23445678899999999999


Q ss_pred             CCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeee
Q 024842          105 RNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAH  184 (262)
Q Consensus       105 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH  184 (262)
                      |||+++++.+.          .....+++|||+.+++|.+++.     ...+++..++.++.|++.|+.|||+++  ++|
T Consensus        62 ~~i~~~~~~~~----------~~~~~~lv~e~~~~~~L~~~~~-----~~~~~~~~~~~~~~~i~~~l~~lH~~~--ivH  124 (277)
T cd06642          62 PYITRYYGSYL----------KGTKLWIIMEYLGGGSALDLLK-----PGPLEETYIATILREILKGLDYLHSER--KIH  124 (277)
T ss_pred             CccHhhhcccc----------cCCceEEEEEccCCCcHHHHhh-----cCCCCHHHHHHHHHHHHHHHHHHhcCC--eec
Confidence            99999999873          3567899999999999988774     345899999999999999999999988  999


Q ss_pred             cCCCCCcEEEecCCCCCCceEEeeccceeeccccC-----ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecc
Q 024842          185 NDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELM  259 (262)
Q Consensus       185 ~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~  259 (262)
                      +||+|+||+++.++    .++|+|||++.......     ..+...|.+||.+....     .....|+|++|+++++|+
T Consensus       125 ~dl~p~ni~i~~~~----~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-----~~~~~Dv~slG~il~el~  195 (277)
T cd06642         125 RDIKAANVLLSEQG----DVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIKQSA-----YDFKADIWSLGITAIELA  195 (277)
T ss_pred             cCCChheEEEeCCC----CEEEccccccccccCcchhhhcccCcccccCHHHhCcCC-----CchhhhHHHHHHHHHHHH
Confidence            99999999998766    69999999987654322     13445566666443221     112367777777777777


Q ss_pred             cCC
Q 024842          260 FGR  262 (262)
Q Consensus       260 ~G~  262 (262)
                      +|+
T Consensus       196 tg~  198 (277)
T cd06642         196 KGE  198 (277)
T ss_pred             hCC
Confidence            774

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25

>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

Probab=99.96  E-value=1.4e-28  Score=198.19  Aligned_cols=182  Identities=17%  Similarity=0.235  Sum_probs=135.7

Q ss_pred             EeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc--hHHHHHHHHHHHHhhhCCCCCccch
Q 024842           33 QLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN--NEQLEMVREEIRVSSLFSHRNLLPL  110 (262)
Q Consensus        33 ~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~--~~~~~~~~~E~~~l~~l~h~~i~~~  110 (262)
                      .||+|+||.||+|.+....                    .+..+++|+.....  ....+.+..|+.+++.++||||+++
T Consensus         2 ~lg~G~~g~v~~~~~~~~~--------------------~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~   61 (257)
T cd05116           2 ELGSGNFGTVKKGMYKMKK--------------------SEKTVAVKILKNDNNDPALKDELLREANVMQQLDNPYIVRM   61 (257)
T ss_pred             cCCCcCCcceEEeEEecCC--------------------CceEEEEEEccCCCCcHHHHHHHHHHHHHHHhCCCCCcceE
Confidence            5899999999999764322                    13468888765442  3345678899999999999999999


Q ss_pred             hhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeeecCCCCC
Q 024842          111 LDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPG  190 (262)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~dikp~  190 (262)
                      ++.+.           ....+++||++.+++|.+++.    ....+++..++.++.|++.||.|||+++  ++||||||+
T Consensus        62 ~~~~~-----------~~~~~lv~e~~~~~~L~~~l~----~~~~~~~~~~~~i~~qi~~al~~lH~~~--i~H~dlkp~  124 (257)
T cd05116          62 IGICE-----------AESWMLVMELAELGPLNKFLQ----KNKHVTEKNITELVHQVSMGMKYLEETN--FVHRDLAAR  124 (257)
T ss_pred             EEEEc-----------CCCcEEEEecCCCCcHHHHHH----hcCCCCHHHHHHHHHHHHHHHHHHHHCC--Eeecccchh
Confidence            98652           345789999999999999886    3446899999999999999999999998  999999999


Q ss_pred             cEEEecCCCCCCceEEeeccceeeccccCc--------cCcccCCcccchhhhhhhhhhhhhcCcccchheeheeccc
Q 024842          191 NILITCRKGQPPLAILMDFGSARPAQSKFA--------LGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMF  260 (262)
Q Consensus       191 Nill~~~~~~~~~~kl~Dfg~a~~~~~~~~--------~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~  260 (262)
                      ||+++.++    .++|+|||++........        ..+..|.+||.+-.-     ..-..+|+||+|+++|||++
T Consensus       125 nill~~~~----~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-----~~~~~~Di~slG~~l~el~t  193 (257)
T cd05116         125 NVLLVTQH----YAKISDFGLSKALGADENYYKAKTHGKWPVKWYAPECMNYY-----KFSSKSDVWSFGVLMWEAFS  193 (257)
T ss_pred             hEEEcCCC----eEEECCCccccccCCCCCeeeecCCCCCCccccCHhHhccC-----CcCchhHHHHHHHHHHHHHh
Confidence            99998765    699999999876543221        112345555532111     11123667777777777665

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio

>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

Probab=99.96  E-value=1.2e-28  Score=198.90  Aligned_cols=190  Identities=21%  Similarity=0.294  Sum_probs=142.9

Q ss_pred             ecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhC
Q 024842           23 INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLF  102 (262)
Q Consensus        23 ~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l  102 (262)
                      +..++|++.+.||+|++|.||+|.+...                       ..+++|.+..... ..+.+.+|+.+++.+
T Consensus         3 ~~~~~~~~~~~ig~g~~~~v~~~~~~~~-----------------------~~~~~k~~~~~~~-~~~~~~~E~~~l~~l   58 (260)
T cd05070           3 IPRESLQLIKKLGNGQFGEVWMGTWNGN-----------------------TKVAVKTLKPGTM-SPESFLEEAQIMKKL   58 (260)
T ss_pred             CchHHhhhhheeccccCceEEEEEecCC-----------------------ceeEEEEecCCCC-CHHHHHHHHHHHHhc
Confidence            5678999999999999999999986532                       2467776654332 235688999999999


Q ss_pred             CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCe
Q 024842          103 SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPY  182 (262)
Q Consensus       103 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~i  182 (262)
                      +|+|++++++.+.           ....+++|+++.+++|.+++...  ....+++..++.++.|++.||.|||+.+  +
T Consensus        59 ~~~~i~~~~~~~~-----------~~~~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~~~~~l~~al~~lH~~~--i  123 (260)
T cd05070          59 RHDKLVQLYAVVS-----------EEPIYIVTEYMSKGSLLDFLKDG--EGRALKLPNLVDMAAQVAAGMAYIERMN--Y  123 (260)
T ss_pred             CCCceEEEEeEEC-----------CCCcEEEEEecCCCcHHHHHHhc--CCCCCCHHHHHHHHHHHHHHHHHHHHCC--c
Confidence            9999999987652           34578999999999999987531  2345899999999999999999999988  9


Q ss_pred             eecCCCCCcEEEecCCCCCCceEEeeccceeeccccCc------cCcccCCcccchhhhhhhhhhhhhcCcccchheehe
Q 024842          183 AHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKFA------LGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMR  256 (262)
Q Consensus       183 vH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~~------~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~  256 (262)
                      +|+||||+||+++.++    .++|+|||++........      .++..|.+||.+..-     ......|+|++|++++
T Consensus       124 ~H~di~p~Nili~~~~----~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-----~~~~~~Di~slG~~l~  194 (260)
T cd05070         124 IHRDLRSANILVGDGL----VCKIADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYG-----RFTIKSDVWSFGILLT  194 (260)
T ss_pred             ccCCCccceEEEeCCc----eEEeCCceeeeeccCcccccccCCCCCccccChHHHhcC-----CCcchhhhHHHHHHHH
Confidence            9999999999998766    699999999986543221      122346666643211     1122456777777777


Q ss_pred             eccc
Q 024842          257 ELMF  260 (262)
Q Consensus       257 ~l~~  260 (262)
                      +|++
T Consensus       195 ~l~~  198 (260)
T cd05070         195 ELVT  198 (260)
T ss_pred             HHHh
Confidence            7666

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r

>cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.96  E-value=1.5e-28  Score=198.63  Aligned_cols=199  Identities=15%  Similarity=0.111  Sum_probs=136.9

Q ss_pred             EEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCCCCCccchh
Q 024842           32 RQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSHRNLLPLL  111 (262)
Q Consensus        32 ~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~  111 (262)
                      +.||+|+||.||+|............          ........+++|............+.+|+.+++.++||||++++
T Consensus         1 ~~lg~G~~~~vy~~~~~~~~~~~~~~----------~~~~~~~~v~~k~~~~~~~~~~~~~~~~~~~l~~l~hp~iv~~~   70 (262)
T cd05077           1 EHLGRGTRTQIYAGILNYKDDDEDDG----------YSYEKEIKVILKVLDPSHRDISLAFFETASMMRQVSHKHIVLLY   70 (262)
T ss_pred             CccccCCcceEeeeecccCCCccccc----------cchhhceeEEEeecChhhhhHHHHHHHHHHHHHhCCCCCEeeEE
Confidence            36899999999999864332110000          00011235777876655555566788899999999999999999


Q ss_pred             hhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeeecCCCCCc
Q 024842          112 DHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGN  191 (262)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~dikp~N  191 (262)
                      +++.          .....+++|||+.+++|..++..   ....+++..++.++.|++.||+|||+.+  ++||||||+|
T Consensus        71 ~~~~----------~~~~~~lv~e~~~~~~l~~~~~~---~~~~~~~~~~~~i~~qi~~~l~~lH~~~--ivH~dlkp~N  135 (262)
T cd05077          71 GVCV----------RDVENIMVEEFVEFGPLDLFMHR---KSDVLTTPWKFKVAKQLASALSYLEDKD--LVHGNVCTKN  135 (262)
T ss_pred             EEEe----------cCCCCEEEEecccCCCHHHHHHh---cCCCCCHHHHHHHHHHHHHHHHHhhhCC--eECCCCCccc
Confidence            9873          34567899999999999877642   3355899999999999999999999988  9999999999


Q ss_pred             EEEecCCC---CCCceEEeeccceeecccc-CccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecc
Q 024842          192 ILITCRKG---QPPLAILMDFGSARPAQSK-FALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELM  259 (262)
Q Consensus       192 ill~~~~~---~~~~~kl~Dfg~a~~~~~~-~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~  259 (262)
                      ||++.++.   ..+.++++|||++...... ...++..|.+||.+-...    ......|||++|+++|+|+
T Consensus       136 ill~~~~~~~~~~~~~~l~d~g~~~~~~~~~~~~~~~~y~aPE~~~~~~----~~~~~~DiwslG~~l~el~  203 (262)
T cd05077         136 ILLAREGIDGECGPFIKLSDPGIPITVLSRQECVERIPWIAPECVEDSK----NLSIAADKWSFGTTLWEIC  203 (262)
T ss_pred             EEEecCCccCCCCceeEeCCCCCCccccCcccccccccccChhhhcCCC----CCCchhHHHHHHHHHHHHH
Confidence            99976542   1224899999998765432 223444555555321100    0111245555555555554

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=99.96  E-value=1.4e-29  Score=227.06  Aligned_cols=201  Identities=22%  Similarity=0.355  Sum_probs=152.6

Q ss_pred             CceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc-hHHHHHHHHHHHHhhhCCC
Q 024842           26 NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN-NEQLEMVREEIRVSSLFSH  104 (262)
Q Consensus        26 ~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~-~~~~~~~~~E~~~l~~l~h  104 (262)
                      .+|+..+.||+|+||.||++++..++.                      .||+|++.... ......+.+|+.++++|+|
T Consensus       479 ~DFEEL~lLGkGGFG~VvkVRNKlDGr----------------------~YAIKKIpl~~s~~~~skI~rEVk~LArLnH  536 (1351)
T KOG1035|consen  479 NDFEELELLGKGGFGSVVKVRNKLDGR----------------------EYAIKKIPLKASDKLYSKILREVKLLARLNH  536 (1351)
T ss_pred             hhhHHHHHhcCCCCceEEEEeecccch----------------------hhhhhhccCchHHHHHHHHHHHHHHHhhcCC
Confidence            467888999999999999999987654                      89999998773 3345678899999999999


Q ss_pred             CCccchhhhhHHHhh--------------------------------------------------hcc--------CC--
Q 024842          105 RNLLPLLDHAIIAVK--------------------------------------------------ANQ--------EG--  124 (262)
Q Consensus       105 ~~i~~~~~~~~~~~~--------------------------------------------------~~~--------~~--  124 (262)
                      ||+++++..|++...                                                  ...        .+  
T Consensus       537 pNVVRYysAWVEs~~~~~~~ei~~~~~~~~sQs~s~~~~~~~~~q~t~~p~~~~~~~~~~~~dd~sss~~~~~~~~~~~~  616 (1351)
T KOG1035|consen  537 PNVVRYYSAWVESTAELTVLEIVASDSESRSQSASKYNGVDIRYQPTSSPSLTLSELDSEDEDDKSSSYTTRKASYESST  616 (1351)
T ss_pred             cceeeeehhhhccCCccccccccccchhhhcccCCCcccceeeeccCCCcccCcchhhccccCccccccccccccccccC
Confidence            999999998876422                                                  000        00  


Q ss_pred             ------------------------------------------C-------CcceeEEEEeecCCCchhhHHHHhhhcCCC
Q 024842          125 ------------------------------------------S-------WKHEAYLLFPVHLDGTLLDHAKVMQTKKEF  155 (262)
Q Consensus       125 ------------------------------------------~-------~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~  155 (262)
                                                                .       ....+|+-||||+..++.+++.    .+..
T Consensus       617 d~e~~d~dedg~~~S~tS~~e~~~~~d~~~ess~s~~~~~n~~e~~~~~q~~~~LYIQMEyCE~~ll~~iI~----~N~~  692 (1351)
T KOG1035|consen  617 DEENDDSDEDGRNLSNTSDSEGSVILDDTSESSESIPKTENSSEPMVPVQKPLILYIQMEYCEKTLLRDIIR----RNHF  692 (1351)
T ss_pred             CcccccccccccccccccccCCccccCcchhhhhhccccCCccccccccccceEEEEEHhhhhhhHHHHHHH----hccc
Confidence                                                      0       0035788999999988888886    3333


Q ss_pred             C-CHHHHHHHHHHHHHHHHHHHcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeecc------------------
Q 024842          156 F-STSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQ------------------  216 (262)
Q Consensus       156 ~-~~~~~~~i~~ql~~~l~~lH~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~------------------  216 (262)
                      . .....|+++++|+.||.|+|++|  ||||||||.||+++.++    .+||+|||+|....                  
T Consensus       693 ~~~~d~~wrLFreIlEGLaYIH~~g--iIHRDLKP~NIFLd~~~----~VKIGDFGLAt~~~~~~~~~d~~~~~~~~~~g  766 (1351)
T KOG1035|consen  693 NSQRDEAWRLFREILEGLAYIHDQG--IIHRDLKPRNIFLDSRN----SVKIGDFGLATDLKENLESIDQDLSFSTNRAG  766 (1351)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHhCc--eeeccCCcceeEEcCCC----CeeecccccchhhhhhhhhHhhccCccccccC
Confidence            3 57899999999999999999999  99999999999999776    69999999998621                  


Q ss_pred             cc-----CccCcccCCcccchhhhhhhhhhhhhcCcccchheeheeccc
Q 024842          217 SK-----FALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMF  260 (262)
Q Consensus       217 ~~-----~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~  260 (262)
                      ++     ...||..|.+||-.-....  ..+.++.|+||+|++++||+.
T Consensus       767 ~~~~~~Ts~VGTalYvAPEll~~~~~--~~Yn~KiDmYSLGIVlFEM~y  813 (1351)
T KOG1035|consen  767 SNDGDLTSQVGTALYVAPELLSDTSS--NKYNSKIDMYSLGIVLFEMLY  813 (1351)
T ss_pred             CCCcccccccceeeeecHHHhccccc--ccccchhhhHHHHHHHHHHhc
Confidence            00     0246777777775544332  223345678888888887753

>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

Probab=99.96  E-value=6.5e-29  Score=200.77  Aligned_cols=191  Identities=19%  Similarity=0.222  Sum_probs=148.5

Q ss_pred             CceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc-hHHHHHHHHHHHHhhhCCC
Q 024842           26 NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN-NEQLEMVREEIRVSSLFSH  104 (262)
Q Consensus        26 ~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~-~~~~~~~~~E~~~l~~l~h  104 (262)
                      ++|++.+.||.|++|.||++.+..+++                      .+++|.+.... ......+.+|+++++.++|
T Consensus         1 ~~~~~~~~ig~g~~~~v~~~~~~~~~~----------------------~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~   58 (265)
T cd06605           1 DDLEYLGELGAGNSGVVSKVLHRPTGK----------------------IMAVKTIRLEINEAIQKQILRELDILHKCNS   58 (265)
T ss_pred             CcchHHHHhcCCCCeEEEEEEEcCCCc----------------------EEEEEEEecccChHHHHHHHHHHHHHHHCCC
Confidence            468889999999999999999876544                      67777665542 3445678899999999999


Q ss_pred             CCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHc-CCCCee
Q 024842          105 RNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHS-LEPPYA  183 (262)
Q Consensus       105 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~-~~~~iv  183 (262)
                      |||+++++.+.          .....++++|++.+++|.+++...   ...+++..++.++.|++.||.|||+ .+  ++
T Consensus        59 ~~i~~~~~~~~----------~~~~~~lv~e~~~~~~L~~~~~~~---~~~~~~~~~~~~~~~l~~~l~~lH~~~~--i~  123 (265)
T cd06605          59 PYIVGFYGAFY----------NNGDISICMEYMDGGSLDKILKEV---QGRIPERILGKIAVAVLKGLTYLHEKHK--II  123 (265)
T ss_pred             Cchhhhheeee----------cCCEEEEEEEecCCCcHHHHHHHc---cCCCCHHHHHHHHHHHHHHHHHHcCCCC--ee
Confidence            99999998873          257799999999999999988632   2568999999999999999999999 88  99


Q ss_pred             ecCCCCCcEEEecCCCCCCceEEeeccceeeccccC---ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheeccc
Q 024842          184 HNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF---ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMF  260 (262)
Q Consensus       184 H~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~---~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~  260 (262)
                      |+||+|+||+++.++    .++|+|||.+.......   ..++..|.+||.+.+..     ....+|+|++|+++++|++
T Consensus       124 H~dl~~~ni~~~~~~----~~~l~d~g~~~~~~~~~~~~~~~~~~y~~PE~~~~~~-----~~~~~Dv~slG~~l~~l~~  194 (265)
T cd06605         124 HRDVKPSNILVNSRG----QIKLCDFGVSGQLVNSLAKTFVGTSSYMAPERIQGND-----YSVKSDIWSLGLSLIELAT  194 (265)
T ss_pred             cCCCCHHHEEECCCC----CEEEeecccchhhHHHHhhcccCChhccCHHHHcCCC-----CCchhhHHHHHHHHHHHHh
Confidence            999999999998766    69999999987653221   34555666666443321     1123577777777777766


Q ss_pred             CC
Q 024842          261 GR  262 (262)
Q Consensus       261 G~  262 (262)
                      |+
T Consensus       195 g~  196 (265)
T cd06605         195 GR  196 (265)
T ss_pred             CC
Confidence            63

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity

>KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.96  E-value=1.2e-29  Score=228.81  Aligned_cols=193  Identities=21%  Similarity=0.304  Sum_probs=156.1

Q ss_pred             CceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc--hHHHHHHHHHHHHhhhCC
Q 024842           26 NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN--NEQLEMVREEIRVSSLFS  103 (262)
Q Consensus        26 ~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~--~~~~~~~~~E~~~l~~l~  103 (262)
                      -+|+-...||.|.||.||.|.+..+++.                      .|+|-+....  ....+.+.+|..++..++
T Consensus      1235 ~rWqrg~~Ig~G~fG~VYtavN~~tGel----------------------lAvKEI~iq~~~~k~~~~i~eEm~vlE~ln 1292 (1509)
T KOG4645|consen 1235 FRWQRGNFIGGGTFGKVYTAVNLDTGEL----------------------LAVKEIKIQDSDHKTFKLIAEEMKVLEGLN 1292 (1509)
T ss_pred             eeeccccccCCcceeeeEEeecCCccch----------------------hhhhhhhcCccccccCcchHHHHHHHHhcc
Confidence            4577788999999999999999988774                      4555443332  222356788999999999


Q ss_pred             CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCee
Q 024842          104 HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYA  183 (262)
Q Consensus       104 h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~iv  183 (262)
                      |||+++++++-+.          ....+++||||.+|+|.+++.    .....++.....+..|++.|+.|||+.|  ||
T Consensus      1293 HpNlV~YyGVEvH----------Rekv~IFMEyC~~GsLa~ll~----~gri~dE~vt~vyt~qll~gla~LH~~g--IV 1356 (1509)
T KOG4645|consen 1293 HPNLVRYYGVEVH----------REKVYIFMEYCEGGSLASLLE----HGRIEDEMVTRVYTKQLLEGLAYLHEHG--IV 1356 (1509)
T ss_pred             CccccccCceeec----------HHHHHHHHHHhccCcHHHHHH----hcchhhhhHHHHHHHHHHHHHHHHHhcC--ce
Confidence            9999999998643          677899999999999999986    4555777788888999999999999999  99


Q ss_pred             ecCCCCCcEEEecCCCCCCceEEeeccceeeccccC---------ccCcccCCcccchhhhhhhhhhhhhcCcccchhee
Q 024842          184 HNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF---------ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQIL  254 (262)
Q Consensus       184 H~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~---------~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~  254 (262)
                      ||||||.||+++.++    .+|++|||.|..+..+.         ..|++.|++||-+-.--.  ---....||||+|++
T Consensus      1357 HRDIK~aNI~Ld~~g----~iK~~DFGsa~ki~~~~~~~~~el~~~~GT~~YMAPEvit~t~~--kG~~~A~DiWslGCV 1430 (1509)
T KOG4645|consen 1357 HRDIKPANILLDFNG----LIKYGDFGSAVKIKNNAQTMPGELQSMMGTPMYMAPEVITGTKG--KGHGGAADIWSLGCV 1430 (1509)
T ss_pred             ecCCCccceeeecCC----cEEeecccceeEecCchhcCCHHHHhhcCCchhcCchhhccccc--CCCCcchhhhcccce
Confidence            999999999999887    79999999999886553         368899999987743210  001123689999999


Q ss_pred             heecccCC
Q 024842          255 MRELMFGR  262 (262)
Q Consensus       255 ~~~l~~G~  262 (262)
                      +.||+|||
T Consensus      1431 VlEM~tGk 1438 (1509)
T KOG4645|consen 1431 VLEMATGK 1438 (1509)
T ss_pred             EEEeecCC
Confidence            99999997

>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

Probab=99.96  E-value=4e-28  Score=195.24  Aligned_cols=191  Identities=25%  Similarity=0.377  Sum_probs=149.1

Q ss_pred             ceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc--chHHHHHHHHHHHHhhhCCC
Q 024842           27 RYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ--NNEQLEMVREEIRVSSLFSH  104 (262)
Q Consensus        27 ~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~--~~~~~~~~~~E~~~l~~l~h  104 (262)
                      +|++.+.||+|+||.+|++++..+++                      .+++|.+...  .....+.+.+|+.+++.++|
T Consensus         1 ~y~~~~~lg~g~~g~~~~~~~~~~~~----------------------~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~   58 (256)
T cd08218           1 KYVKVKKIGEGSFGKAILVKSKEDGK----------------------QYVIKEINISKMSPKEREESRKEVAVLSNMKH   58 (256)
T ss_pred             CceEEEEeccCCceEEEEEEEcCCCC----------------------EEEEEEEEhHhCChHHHHHHHHHHHHHHhCCC
Confidence            58999999999999999999876544                      5777766533  23344678899999999999


Q ss_pred             CCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeee
Q 024842          105 RNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAH  184 (262)
Q Consensus       105 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH  184 (262)
                      |||+++++.+          ......++++|++.+++|.+.+...  ....+++..++.++.|++.||.|||+++  ++|
T Consensus        59 ~~i~~~~~~~----------~~~~~~~lv~e~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~l~~~l~~lh~~~--i~h  124 (256)
T cd08218          59 PNIVQYQESF----------EENGNLYIVMDYCEGGDLYKKINAQ--RGVLFPEDQILDWFVQICLALKHVHDRK--ILH  124 (256)
T ss_pred             CCeeeeEeee----------cCCCeEEEEEecCCCCcHHHHHHhc--cCCCCCHHHHHHHHHHHHHHHHHHHhCC--Eec
Confidence            9999999987          3466899999999999998877531  2235789999999999999999999998  999


Q ss_pred             cCCCCCcEEEecCCCCCCceEEeeccceeeccccC-----ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecc
Q 024842          185 NDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELM  259 (262)
Q Consensus       185 ~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~  259 (262)
                      +||+|+||+++.++    .++|+|||++.......     ..++..|.+||...+-.     .....|+|++|+++++|+
T Consensus       125 ~~l~~~nil~~~~~----~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~-----~~~~~Dv~slG~i~~~l~  195 (256)
T cd08218         125 RDIKSQNIFLTKDG----TIKLGDFGIARVLNSTVELARTCIGTPYYLSPEICENRP-----YNNKSDIWALGCVLYEMC  195 (256)
T ss_pred             CCCCHHHEEEcCCC----CEEEeeccceeecCcchhhhhhccCCccccCHHHhCCCC-----CCCccchhHHHHHHHHHH
Confidence            99999999998766    69999999998664432     23455566666543221     112467888888888877


Q ss_pred             cCC
Q 024842          260 FGR  262 (262)
Q Consensus       260 ~G~  262 (262)
                      +|+
T Consensus       196 ~g~  198 (256)
T cd08218         196 TLK  198 (256)
T ss_pred             cCC
Confidence            774

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti

>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

Probab=99.96  E-value=4.6e-28  Score=197.30  Aligned_cols=203  Identities=20%  Similarity=0.264  Sum_probs=145.0

Q ss_pred             ecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc-hHHHHHHHHHHHHhhh
Q 024842           23 INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN-NEQLEMVREEIRVSSL  101 (262)
Q Consensus        23 ~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~-~~~~~~~~~E~~~l~~  101 (262)
                      +..++|++.+.||+|++|.||+|.+......                 .....+++|...... ......+..|+.+++.
T Consensus         3 ~~~~~~~~~~~lg~g~~g~vy~~~~~~~~~~-----------------~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~   65 (277)
T cd05036           3 VPRDSITLLRALGHGAFGEVYEGLYRGRDGD-----------------AVELQVAVKTLPESCSEQDESDFLMEALIMSK   65 (277)
T ss_pred             CCHHHcEeeeECCCCCCCcEEEEEEecCCCC-----------------CCceeEEEEEcCCCCCHHHHHHHHHHHHHHHh
Confidence            3467899999999999999999998652100                 012357777765443 3334568889999999


Q ss_pred             CCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhh---cCCCCCHHHHHHHHHHHHHHHHHHHcC
Q 024842          102 FSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQT---KKEFFSTSDVLQIFYQICAGLKHMHSL  178 (262)
Q Consensus       102 l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~---~~~~~~~~~~~~i~~ql~~~l~~lH~~  178 (262)
                      ++|+||+++++.+.          .....+++||++.+++|.+++.....   ....+++..+..++.|++.||.|||++
T Consensus        66 l~~~~i~~~~~~~~----------~~~~~~lv~e~~~g~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~  135 (277)
T cd05036          66 FNHQNIVRLIGVSF----------ERLPRFILLELMAGGDLKSFLRENRPRPERPSSLTMKDLLFCARDVAKGCKYLEEN  135 (277)
T ss_pred             CCCCCEeeEEEEEc----------cCCCcEEEEecCCCCCHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            99999999998773          34567899999999999998864321   113589999999999999999999999


Q ss_pred             CCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccCc-------cCcccCCcccchhhhhhhhhhhhhcCcccch
Q 024842          179 EPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKFA-------LGQRRYSCRNGLLSIVLHLSELLSCGTVRVI  251 (262)
Q Consensus       179 ~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~~-------~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~  251 (262)
                      +  ++|+||||+||+++.++. ...++|+|||++........       .....|.+||.+..-     ......|+|++
T Consensus       136 ~--ivH~dlkp~nil~~~~~~-~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-----~~~~~~Diwsl  207 (277)
T cd05036         136 H--FIHRDIAARNCLLTCKGP-GRVAKIADFGMARDIYRASYYRKGGRAMLPIKWMPPEAFLDG-----IFTSKTDVWSF  207 (277)
T ss_pred             C--EeecccchheEEEeccCC-CcceEeccCccccccCCccceecCCCCCccHhhCCHHHHhcC-----CcCchhHHHHH
Confidence            8  999999999999986542 22689999999986532211       112235555443211     11223566666


Q ss_pred             heeheeccc
Q 024842          252 QILMRELMF  260 (262)
Q Consensus       252 g~~~~~l~~  260 (262)
                      |+++++|++
T Consensus       208 G~il~el~~  216 (277)
T cd05036         208 GVLLWEIFS  216 (277)
T ss_pred             HHHHHHHHc
Confidence            666666554

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well

>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

Probab=99.96  E-value=1.6e-28  Score=206.01  Aligned_cols=203  Identities=25%  Similarity=0.352  Sum_probs=150.1

Q ss_pred             CCceeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc--chHHHHHHHHH
Q 024842           18 GGDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ--NNEQLEMVREE   95 (262)
Q Consensus        18 ~~~~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~--~~~~~~~~~~E   95 (262)
                      ..++|...++|.+.+.||+|+||.||+|.+..+++                      .|++|++...  .....+.+.+|
T Consensus         9 ~~~~~~~~~~y~~~~~lg~G~~g~v~~~~~~~~~~----------------------~vaiK~~~~~~~~~~~~~~~~~E   66 (345)
T cd07877           9 NKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGL----------------------RVAVKKLSRPFQSIIHAKRTYRE   66 (345)
T ss_pred             HHHHhhccCceEEEEEeeecCCeEEEEEEEcCCCe----------------------EEEEEEecCcchhhHHHHHHHHH
Confidence            44667778999999999999999999999876544                      6777776543  22334567789


Q ss_pred             HHHhhhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHH
Q 024842           96 IRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHM  175 (262)
Q Consensus        96 ~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~l  175 (262)
                      +.+++.++||||+++++.+....    ........++++++ .+++|.+++.     ...+++..++.++.|++.||+||
T Consensus        67 i~~l~~l~h~~iv~~~~~~~~~~----~~~~~~~~~lv~~~-~~~~L~~~~~-----~~~l~~~~~~~i~~qi~~aL~~L  136 (345)
T cd07877          67 LRLLKHMKHENVIGLLDVFTPAR----SLEEFNDVYLVTHL-MGADLNNIVK-----CQKLTDDHVQFLIYQILRGLKYI  136 (345)
T ss_pred             HHHHHHcCCCcccceeeeeeecc----cccccccEEEEehh-cccCHHHHHh-----cCCCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998763110    00112346677775 4778877664     23489999999999999999999


Q ss_pred             HcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC--ccCcccCCcccchhhhhhhhhhhhhcCcccchhe
Q 024842          176 HSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF--ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQI  253 (262)
Q Consensus       176 H~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~--~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~  253 (262)
                      |+.+  ++|+||||+||+++.++    .++|+|||++.......  ..++..|.+||.+....    ......|+|++|+
T Consensus       137 H~~~--ivH~dlkp~NIll~~~~----~~kl~dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~----~~~~~~DvwslG~  206 (345)
T cd07877         137 HSAD--IIHRDLKPSNLAVNEDC----ELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWM----HYNQTVDIWSVGC  206 (345)
T ss_pred             HHCC--eeecCCChHHEEEcCCC----CEEEecccccccccccccccccCCCccCHHHHhCcc----CCCchhhHHHHHH
Confidence            9998  99999999999998776    69999999987654332  23455666666542210    1112368888888


Q ss_pred             eheecccCC
Q 024842          254 LMRELMFGR  262 (262)
Q Consensus       254 ~~~~l~~G~  262 (262)
                      ++++|++|+
T Consensus       207 il~el~~g~  215 (345)
T cd07877         207 IMAELLTGR  215 (345)
T ss_pred             HHHHHHhCC
Confidence            888888774

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14

>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

Probab=99.96  E-value=3.5e-28  Score=195.11  Aligned_cols=189  Identities=24%  Similarity=0.314  Sum_probs=150.1

Q ss_pred             ceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccch--HHHHHHHHHHHHhhhCCC
Q 024842           27 RYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNN--EQLEMVREEIRVSSLFSH  104 (262)
Q Consensus        27 ~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~--~~~~~~~~E~~~l~~l~h  104 (262)
                      +|++.+.||+|++|.||++.+..+++                      .+++|.+.....  ...+.+.+|+++++.++|
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~----------------------~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~   58 (254)
T cd06627           1 NYQLGDLIGRGAFGVVYKGLNLETGD----------------------FVAIKQISLEKIKEEALKSIMQEIDLLKNLKH   58 (254)
T ss_pred             CceeeeEEcccCCeEEEEEEEcCCCc----------------------EEEEEEecccccCHHHHHHHHHHHHHHHhCCC
Confidence            58899999999999999999876544                      677777665543  456788999999999999


Q ss_pred             CCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeee
Q 024842          105 RNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAH  184 (262)
Q Consensus       105 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH  184 (262)
                      +|++++++.+.          .....+++|+++.+++|.+++.    ....+++..++.++.|++.||.+||+.+  ++|
T Consensus        59 ~~i~~~~~~~~----------~~~~~~~v~e~~~~~~L~~~~~----~~~~l~~~~~~~~~~~i~~~l~~lH~~~--i~H  122 (254)
T cd06627          59 PNIVKYIGSIE----------TSDSLYIILEYAENGSLRQIIK----KFGPFPESLVAVYVYQVLQGLAYLHEQG--VIH  122 (254)
T ss_pred             CCccEEEEEEE----------eCCEEEEEEecCCCCcHHHHHH----hccCCCHHHHHHHHHHHHHHHHHHhhCC--ccc
Confidence            99999998873          3567899999999999999886    3356899999999999999999999998  999


Q ss_pred             cCCCCCcEEEecCCCCCCceEEeeccceeeccccCc-----cCcccCCcccchhhhhhhhhhhhhcCcccchheeheecc
Q 024842          185 NDVKPGNILITCRKGQPPLAILMDFGSARPAQSKFA-----LGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELM  259 (262)
Q Consensus       185 ~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~~-----~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~  259 (262)
                      +||+|+||+++.++    .++|+|||.+........     .++..|.+||......     .-...|+|++|+++++|+
T Consensus       123 ~dl~p~ni~i~~~~----~~~l~d~~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~-----~~~~~Dv~~lG~~l~~l~  193 (254)
T cd06627         123 RDIKAANILTTKDG----VVKLADFGVATKLNDVSKDDASVVGTPYWMAPEVIEMSG-----ASTASDIWSLGCTVIELL  193 (254)
T ss_pred             CCCCHHHEEECCCC----CEEEeccccceecCCCcccccccccchhhcCHhhhcCCC-----CCcchhHHHHHHHHHHHH
Confidence            99999999998765    699999999987654332     3455566666443221     122467777777777777


Q ss_pred             cCC
Q 024842          260 FGR  262 (262)
Q Consensus       260 ~G~  262 (262)
                      +|+
T Consensus       194 ~g~  196 (254)
T cd06627         194 TGN  196 (254)
T ss_pred             hCC
Confidence            764

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast

>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

Probab=99.96  E-value=6.7e-28  Score=194.51  Aligned_cols=190  Identities=20%  Similarity=0.278  Sum_probs=142.8

Q ss_pred             ecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhC
Q 024842           23 INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLF  102 (262)
Q Consensus        23 ~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l  102 (262)
                      +..++|++.+.||+|+||.||++.+...                       ..+++|...... ...+.+.+|+.+++.+
T Consensus         3 ~~~~~~~~~~~lg~g~~~~vy~~~~~~~-----------------------~~~~iK~~~~~~-~~~~~~~~e~~~l~~l   58 (260)
T cd05073           3 IPRESLKLEKKLGAGQFGEVWMATYNKH-----------------------TKVAVKTMKPGS-MSVEAFLAEANVMKTL   58 (260)
T ss_pred             ccccceeEEeEecCccceEEEEEEecCC-----------------------ccEEEEecCCCh-hHHHHHHHHHHHHHhc
Confidence            4578999999999999999999985432                       246777665432 2346788899999999


Q ss_pred             CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCe
Q 024842          103 SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPY  182 (262)
Q Consensus       103 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~i  182 (262)
                      +|+|++++++.+.          . ...+++|||+.+++|.+++...  ....+++..+..++.|++.||.|||+.+  +
T Consensus        59 ~~~~i~~~~~~~~----------~-~~~~~v~e~~~~~~L~~~~~~~--~~~~~~~~~~~~~~~~l~~aL~~lH~~~--i  123 (260)
T cd05073          59 QHDKLVKLHAVVT----------K-EPIYIITEFMAKGSLLDFLKSD--EGSKQPLPKLIDFSAQIAEGMAFIEQRN--Y  123 (260)
T ss_pred             CCCCcceEEEEEc----------C-CCeEEEEEeCCCCcHHHHHHhC--CccccCHHHHHHHHHHHHHHHHHHHhCC--c
Confidence            9999999988762          2 5689999999999999987532  2345788899999999999999999988  9


Q ss_pred             eecCCCCCcEEEecCCCCCCceEEeeccceeeccccCc------cCcccCCcccchhhhhhhhhhhhhcCcccchheehe
Q 024842          183 AHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKFA------LGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMR  256 (262)
Q Consensus       183 vH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~~------~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~  256 (262)
                      +|+||+|+||+++.++    .++|+|||.+........      .+...|.+||.+..-     ......|+|++|++++
T Consensus       124 ~H~dl~p~ni~i~~~~----~~~l~d~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~-----~~~~~~Di~slG~~l~  194 (260)
T cd05073         124 IHRDLRAANILVSASL----VCKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFG-----SFTIKSDVWSFGILLM  194 (260)
T ss_pred             cccccCcceEEEcCCC----cEEECCCcceeeccCCCcccccCCcccccccCHhHhccC-----CcCccccchHHHHHHH
Confidence            9999999999997765    799999999876543221      122345666543211     1112356777777777


Q ss_pred             eccc
Q 024842          257 ELMF  260 (262)
Q Consensus       257 ~l~~  260 (262)
                      ++++
T Consensus       195 ~l~t  198 (260)
T cd05073         195 EIVT  198 (260)
T ss_pred             HHHh
Confidence            7766

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa

>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

Probab=99.96  E-value=2e-28  Score=205.34  Aligned_cols=203  Identities=26%  Similarity=0.392  Sum_probs=149.3

Q ss_pred             CCceeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc--chHHHHHHHHH
Q 024842           18 GGDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ--NNEQLEMVREE   95 (262)
Q Consensus        18 ~~~~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~--~~~~~~~~~~E   95 (262)
                      .+.+|-..++|++.+.||+|++|.||++.+..+++                      .|++|+....  .......+.+|
T Consensus         7 ~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~----------------------~vavK~~~~~~~~~~~~~~~~~E   64 (343)
T cd07880           7 NKTIWEVPDRYRDLKQVGSGAYGTVCSALDRRTGA----------------------KVAIKKLYRPFQSELFAKRAYRE   64 (343)
T ss_pred             hhhhhccccceEEEEEeeecCCeEEEEEEECCCCc----------------------EEEEEEecccccchHHHHHHHHH
Confidence            45667678899999999999999999999876654                      5777765432  23334567889


Q ss_pred             HHHhhhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHH
Q 024842           96 IRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHM  175 (262)
Q Consensus        96 ~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~l  175 (262)
                      +.+++.++||||+++++.+....    ........+++|+++ +++|.+++.     ...+++..++.++.|++.||.||
T Consensus        65 ~~~l~~l~h~~iv~~~~~~~~~~----~~~~~~~~~lv~e~~-~~~l~~~~~-----~~~l~~~~~~~i~~qi~~al~~L  134 (343)
T cd07880          65 LRLLKHMKHENVIGLLDVFTPDL----SLDRFHDFYLVMPFM-GTDLGKLMK-----HEKLSEDRIQFLVYQMLKGLKYI  134 (343)
T ss_pred             HHHHHhcCCCCccceeeeecCCc----cccccceEEEEEecC-CCCHHHHHh-----cCCCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998874210    001123468999987 678877764     34589999999999999999999


Q ss_pred             HcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC--ccCcccCCcccchhhhhhhhhhhhhcCcccchhe
Q 024842          176 HSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF--ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQI  253 (262)
Q Consensus       176 H~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~--~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~  253 (262)
                      |+.+  ++|+||||+||+++.++    .++|+|||++.......  ..++..|++|+.+....    ......|+|++|+
T Consensus       135 H~~g--i~H~dlkp~Nill~~~~----~~kl~dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~----~~~~~~Di~slG~  204 (343)
T cd07880         135 HAAG--IIHRDLKPGNLAVNEDC----ELKILDFGLARQTDSEMTGYVVTRWYRAPEVILNWM----HYTQTVDIWSVGC  204 (343)
T ss_pred             HhCC--eecCCCCHHHEEEcCCC----CEEEeecccccccccCccccccCCcccCHHHHhCCC----CCCcHHHHHHHHH
Confidence            9988  99999999999998766    69999999998654432  23445566666542211    0112357777777


Q ss_pred             eheecccCC
Q 024842          254 LMRELMFGR  262 (262)
Q Consensus       254 ~~~~l~~G~  262 (262)
                      +++++++|+
T Consensus       205 ll~~l~~g~  213 (343)
T cd07880         205 IMAEMLTGK  213 (343)
T ss_pred             HHHHHHhCC
Confidence            777777764

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12

>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4

Probab=99.96  E-value=1.7e-28  Score=202.38  Aligned_cols=195  Identities=19%  Similarity=0.222  Sum_probs=142.9

Q ss_pred             ecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc-hHHHHHHHHHHHHhhh
Q 024842           23 INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN-NEQLEMVREEIRVSSL  101 (262)
Q Consensus        23 ~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~-~~~~~~~~~E~~~l~~  101 (262)
                      +..++|+..+.||+|+||.||+|.+..+++.+.                  ..+++|...... ......+.+|+.+++.
T Consensus         4 ~~~~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~------------------~~vaiK~~~~~~~~~~~~~~~~e~~~~~~   65 (303)
T cd05110           4 LKETELKRVKVLGSGAFGTVYKGIWVPEGETVK------------------IPVAIKILNETTGPKANVEFMDEALIMAS   65 (303)
T ss_pred             cchhhceeccccccCCCccEEEEEEecCCCcce------------------eeEEEEeccccCCHHHHHHHHHHHHHHHh
Confidence            456789999999999999999999877655322                  146777665443 2333467889999999


Q ss_pred             CCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCC
Q 024842          102 FSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPP  181 (262)
Q Consensus       102 l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~  181 (262)
                      ++||||+++++.+.           ....+++++++.+++|.+++..   ....+++..++.++.|++.||.|||+++  
T Consensus        66 l~h~niv~~~~~~~-----------~~~~~~v~e~~~~g~l~~~~~~---~~~~~~~~~~~~~~~qi~~~L~~LH~~~--  129 (303)
T cd05110          66 MDHPHLVRLLGVCL-----------SPTIQLVTQLMPHGCLLDYVHE---HKDNIGSQLLLNWCVQIAKGMMYLEERR--  129 (303)
T ss_pred             CCCCCcccEEEEEc-----------CCCceeeehhcCCCCHHHHHHh---cccCCCHHHHHHHHHHHHHHHHHHhhcC--
Confidence            99999999999763           2346789999999999988752   2345899999999999999999999988  


Q ss_pred             eeecCCCCCcEEEecCCCCCCceEEeeccceeeccccCc-------cCcccCCcccchhhhhhhhhhhhhcCcccchhee
Q 024842          182 YAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKFA-------LGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQIL  254 (262)
Q Consensus       182 ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~~-------~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~  254 (262)
                      ++|+||||+||+++.++    .+||+|||++........       ..+..|.+|+.+-.     .......|+||+|++
T Consensus       130 ivH~dikp~Nill~~~~----~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~-----~~~~~~~DiwslG~~  200 (303)
T cd05110         130 LVHRDLAARNVLVKSPN----HVKITDFGLARLLEGDEKEYNADGGKMPIKWMALECIHY-----RKFTHQSDVWSYGVT  200 (303)
T ss_pred             eeccccccceeeecCCC----ceEEccccccccccCcccccccCCCccccccCCHHHhcc-----CCCChHHHHHHHHHH
Confidence            99999999999997766    699999999986542211       12234555543211     111123566666666


Q ss_pred             heeccc
Q 024842          255 MRELMF  260 (262)
Q Consensus       255 ~~~l~~  260 (262)
                      +|||++
T Consensus       201 l~el~t  206 (303)
T cd05110         201 IWELMT  206 (303)
T ss_pred             HHHHHh
Confidence            666654

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin

>cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

Probab=99.96  E-value=2.5e-28  Score=197.08  Aligned_cols=188  Identities=22%  Similarity=0.268  Sum_probs=137.2

Q ss_pred             EEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc-chHHHHHHHHHHHHhhhCCCCCccch
Q 024842           32 RQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ-NNEQLEMVREEIRVSSLFSHRNLLPL  110 (262)
Q Consensus        32 ~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~-~~~~~~~~~~E~~~l~~l~h~~i~~~  110 (262)
                      +.||+|+||.||+|.+.....                   ....+++|..... .....+.+.+|+.+++.++|||++++
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~-------------------~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~   61 (262)
T cd05058           1 RVIGKGHFGCVYHGTLIDSDG-------------------QKIHCAVKSLNRITDLEEVEQFLKEGIIMKDFSHPNVLSL   61 (262)
T ss_pred             CcccccCCceEEEEEEecCCC-------------------ceEEEEEEecCccCCHHHHHHHHHHHHHHccCCCCCcceE
Confidence            368999999999998754322                   2236788876433 34455778889999999999999999


Q ss_pred             hhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeeecCCCCC
Q 024842          111 LDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPG  190 (262)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~dikp~  190 (262)
                      ++.+.         ...+..+++|+|+.+++|.+++..   .....++..+..++.|++.||.|||+.+  ++|+||||+
T Consensus        62 ~~~~~---------~~~~~~~lv~e~~~~~~L~~~~~~---~~~~~~~~~~~~~~~~i~~~l~~lH~~~--i~H~dlk~~  127 (262)
T cd05058          62 LGICL---------PSEGSPLVVLPYMKHGDLRNFIRS---ETHNPTVKDLIGFGLQVAKGMEYLASKK--FVHRDLAAR  127 (262)
T ss_pred             EEEee---------cCCCCcEEEEecCCCCCHHHHHHh---cCCCCCHHHHHHHHHHHHHHHHHHHhCC--ccccccCcc
Confidence            98653         224457899999999999998852   2233677888899999999999999988  999999999


Q ss_pred             cEEEecCCCCCCceEEeeccceeeccccC---------ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecccC
Q 024842          191 NILITCRKGQPPLAILMDFGSARPAQSKF---------ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMFG  261 (262)
Q Consensus       191 Nill~~~~~~~~~~kl~Dfg~a~~~~~~~---------~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~G  261 (262)
                      ||+++.++    .++|+|||++.......         ..++..|.+||.+....     .....|+|++|++++||++|
T Consensus       128 nili~~~~----~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-----~~~~~Di~slG~~l~el~~~  198 (262)
T cd05058         128 NCMLDESF----TVKVADFGLARDIYDKEYYSVHNHTGAKLPVKWMALESLQTQK-----FTTKSDVWSFGVLLWELMTR  198 (262)
T ss_pred             eEEEcCCC----cEEECCccccccccCCcceeecccccCcCCccccChhHhccCc-----cchHHHHHHHHHHHHHHHcC
Confidence            99998766    69999999987543211         12233466665432211     11235677777777776664

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca

>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

Probab=99.95  E-value=2.9e-28  Score=196.65  Aligned_cols=182  Identities=22%  Similarity=0.276  Sum_probs=142.0

Q ss_pred             eecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc---hHHHHHHHHHHHHhhhCCCCCccch
Q 024842           34 LGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN---NEQLEMVREEIRVSSLFSHRNLLPL  110 (262)
Q Consensus        34 ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~---~~~~~~~~~E~~~l~~l~h~~i~~~  110 (262)
                      ||.|+||.||++.+..+++                      .+++|.+....   ....+.+.+|+.+++.++|||++++
T Consensus         1 lg~g~~~~vy~~~~~~~~~----------------------~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~   58 (265)
T cd05579           1 ISKGAYGRVFLAKKKSTGD----------------------IYAIKVIKKADMIRKNQVDQVLTERDILSQAQSPYVVKL   58 (265)
T ss_pred             CCCCCceEEEEEEECCCCC----------------------EEEEEEecchhhhhhhHHHHHHHHHHHHHhCCCcchhHH
Confidence            6899999999999876554                      57777665432   2445678889999999999999999


Q ss_pred             hhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeeecCCCCC
Q 024842          111 LDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPG  190 (262)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~dikp~  190 (262)
                      ++.+          ......+++++++.+++|.+++.    +...+++..++.++.|++.||.|||+++  ++|+||+|+
T Consensus        59 ~~~~----------~~~~~~~lv~e~~~~~~L~~~l~----~~~~~~~~~~~~i~~qi~~~L~~lH~~~--i~H~di~~~  122 (265)
T cd05579          59 YYSF----------QGKKNLYLVMEYLPGGDLASLLE----NVGSLDEDVARIYIAEIVLALEYLHSNG--IIHRDLKPD  122 (265)
T ss_pred             HHhe----------ecCcEEEEEEecCCCCcHHHHHH----HcCCCCHHHHHHHHHHHHHHHHHHHHcC--eecCCCCHH
Confidence            8876          34677899999999999999886    3346899999999999999999999998  999999999


Q ss_pred             cEEEecCCCCCCceEEeeccceeeccccC-------------ccCcccCCcccchhhhhhhhhhhhhcCcccchheehee
Q 024842          191 NILITCRKGQPPLAILMDFGSARPAQSKF-------------ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRE  257 (262)
Q Consensus       191 Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-------------~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~  257 (262)
                      ||+++.++    .++|+|||++.......             ..+...|.+|+.+....     .....|+|++|+++++
T Consensus       123 nil~~~~~----~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~-----~~~~~Dv~slG~~~~~  193 (265)
T cd05579         123 NILIDSNG----HLKLTDFGLSKVGLVRRQINLNDDEKEDKRIVGTPDYIAPEVILGQG-----HSKTVDWWSLGCILYE  193 (265)
T ss_pred             HeEEcCCC----CEEEEecccchhcccCcccccccccccccCcccCccccCHHHhcCCC-----CCcchhhHHHHHHHHH
Confidence            99998776    69999999987543321             13444566665443221     1224688888888888


Q ss_pred             cccCC
Q 024842          258 LMFGR  262 (262)
Q Consensus       258 l~~G~  262 (262)
                      +++|+
T Consensus       194 l~~g~  198 (265)
T cd05579         194 FLVGI  198 (265)
T ss_pred             HHhCC
Confidence            88774

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re

>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

Probab=99.95  E-value=8.7e-28  Score=199.14  Aligned_cols=205  Identities=21%  Similarity=0.287  Sum_probs=147.9

Q ss_pred             ceeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc-chHHHHHHHHHHHH
Q 024842           20 DVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ-NNEQLEMVREEIRV   98 (262)
Q Consensus        20 ~~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~-~~~~~~~~~~E~~~   98 (262)
                      ...+..++|.+.+.||+|+||.||++++....+..               ......+++|.+... .......+..|+.+
T Consensus         6 ~~~~~~~~~~~~~~lg~G~~g~vy~~~~~~~~~~~---------------~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~   70 (314)
T cd05099           6 KWEFPRDRLVLGKPLGEGCFGQVVRAEAYGIDKSR---------------PDQTVTVAVKMLKDNATDKDLADLISEMEL   70 (314)
T ss_pred             cccccHHHeeeeeeecCCCcccEEEeeecccCCcc---------------CCcceEEEEEecCCCCChHHHHHHHHHHHH
Confidence            34456789999999999999999999865332110               012346788876643 23345678889999


Q ss_pred             hhhC-CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhh------------cCCCCCHHHHHHHH
Q 024842           99 SSLF-SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQT------------KKEFFSTSDVLQIF  165 (262)
Q Consensus        99 l~~l-~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~------------~~~~~~~~~~~~i~  165 (262)
                      ++.+ +||||+++++.+.          ..+..+++|||+.+++|.+++.....            ....+++.++..++
T Consensus        71 l~~l~~h~~iv~~~~~~~----------~~~~~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  140 (314)
T cd05099          71 MKLIGKHKNIINLLGVCT----------QEGPLYVIVEYAAKGNLREFLRARRPPGPDYTFDITKVPEEQLSFKDLVSCA  140 (314)
T ss_pred             HHhccCCCCeeeEEEEEc----------cCCceEEEEecCCCCcHHHHHHhcCCCcccccccccCCcccccCHHHHHHHH
Confidence            9999 6999999998873          35668999999999999998864321            12458899999999


Q ss_pred             HHHHHHHHHHHcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-------ccCcccCCcccchhhhhhh
Q 024842          166 YQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-------ALGQRRYSCRNGLLSIVLH  238 (262)
Q Consensus       166 ~ql~~~l~~lH~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-------~~~~~~~~~~~d~~s~g~~  238 (262)
                      .|++.||.|||+++  ++|+||||+||+++.++    .+||+|||++.......       ......|++||.+..-.  
T Consensus       141 ~qi~~aL~~lH~~g--i~H~dlkp~Nill~~~~----~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~--  212 (314)
T cd05099         141 YQVARGMEYLESRR--CIHRDLAARNVLVTEDN----VMKIADFGLARGVHDIDYYKKTSNGRLPVKWMAPEALFDRV--  212 (314)
T ss_pred             HHHHHHHHHHHHCC--eeeccccceeEEEcCCC----cEEEccccccccccccccccccccCCCCccccCHHHHccCC--
Confidence            99999999999988  99999999999998766    69999999997653211       11223466665332111  


Q ss_pred             hhhhhhcCcccchheeheeccc
Q 024842          239 LSELLSCGTVRVIQILMRELMF  260 (262)
Q Consensus       239 ~~e~~~~~~v~~~g~~~~~l~~  260 (262)
                         ....+|+|++|+++|+|++
T Consensus       213 ---~~~~~DiwslG~~l~el~~  231 (314)
T cd05099         213 ---YTHQSDVWSFGILMWEIFT  231 (314)
T ss_pred             ---cCccchhhHHHHHHHHHHh
Confidence               1123566666666666655

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

Probab=99.95  E-value=1.4e-28  Score=200.19  Aligned_cols=189  Identities=19%  Similarity=0.249  Sum_probs=147.5

Q ss_pred             ceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc-chHHHHHHHHHHHHhhhCC--
Q 024842           27 RYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ-NNEQLEMVREEIRVSSLFS--  103 (262)
Q Consensus        27 ~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~-~~~~~~~~~~E~~~l~~l~--  103 (262)
                      .|++.+.||+|+||.||+|.+..+++                      .+++|.+... .......+.+|+.+++.++  
T Consensus         2 ~y~~~~~l~~g~~g~v~~~~~~~~~~----------------------~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~~~   59 (277)
T cd06917           2 LYQRLELIGRGAYGAVYRGKHVPTGR----------------------VVALKIINLDTPDDDVSDIQREVALLSQLRQS   59 (277)
T ss_pred             hhhhhhheeccCCceEEEEEEcCCCc----------------------EEEEEEecCCCCchhHHHHHHHHHHHHHhccC
Confidence            58889999999999999999876544                      6777766543 2334466788999988886  


Q ss_pred             -CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCe
Q 024842          104 -HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPY  182 (262)
Q Consensus       104 -h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~i  182 (262)
                       |||++++++.+.          .....+++|||+.+++|.+++.    . ..+++..++.++.|++.||.|||+.+  +
T Consensus        60 ~~~~vi~~~~~~~----------~~~~~~lv~e~~~~~~L~~~~~----~-~~l~~~~~~~i~~~i~~~l~~lh~~~--i  122 (277)
T cd06917          60 QPPNITKYYGSYL----------KGPRLWIIMEYAEGGSVRTLMK----A-GPIAEKYISVIIREVLVALKYIHKVG--V  122 (277)
T ss_pred             CCCCeeeEeeeee----------eCCEEEEEEecCCCCcHHHHHH----c-cCCCHHHHHHHHHHHHHHHHHHHhCC--c
Confidence             999999998873          3567899999999999998874    2 35899999999999999999999998  9


Q ss_pred             eecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-----ccCcccCCcccchhhhhhhhhhhhhcCcccchheehee
Q 024842          183 AHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRE  257 (262)
Q Consensus       183 vH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~  257 (262)
                      +|+||+|+||+++.++    .++|+|||++.......     ..++..|.+||.... +.   ......|+|++|+++|+
T Consensus       123 ~H~dl~p~ni~i~~~~----~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~---~~~~~~Dv~slG~~l~~  194 (277)
T cd06917         123 IHRDIKAANILVTNTG----NVKLCDFGVAALLNQNSSKRSTFVGTPYWMAPEVITE-GK---YYDTKADIWSLGITIYE  194 (277)
T ss_pred             ccCCcCHHHEEEcCCC----CEEEccCCceeecCCCccccccccCCcceeCHHHhcc-CC---ccccchhHHHHHHHHHH
Confidence            9999999999998766    69999999998765432     134455666665432 11   11224788888888888


Q ss_pred             cccCC
Q 024842          258 LMFGR  262 (262)
Q Consensus       258 l~~G~  262 (262)
                      |++|+
T Consensus       195 ll~g~  199 (277)
T cd06917         195 MATGN  199 (277)
T ss_pred             HHhCC
Confidence            88774

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent

>KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms]

Probab=99.95  E-value=5.7e-29  Score=184.20  Aligned_cols=202  Identities=16%  Similarity=0.207  Sum_probs=158.9

Q ss_pred             eecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc-chHHHHHHHHHHHHhh
Q 024842           22 WINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ-NNEQLEMVREEIRVSS  100 (262)
Q Consensus        22 ~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~-~~~~~~~~~~E~~~l~  100 (262)
                      .+..++...+..||+|++|.|-+.++..++.                      ..|+|++... +.+..++...|+.+..
T Consensus        42 eV~ad~L~~i~elGrGayG~vekmrh~~sg~----------------------imAvKri~~tvn~q~q~r~L~dldi~~   99 (282)
T KOG0984|consen   42 EVPADDLVGIEELGRGAYGVVEKMRHIQSGT----------------------IMAVKRIRATVNSQEQKRLLMDLDIIM   99 (282)
T ss_pred             ccchhhhhhhhhhcCCccchhhheeeccCCe----------------------EEEEeeehhhcChHHHHHHHHhhhhhc
Confidence            3445566668889999999999999987665                      5677766544 4555677888888854


Q ss_pred             -hCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCC
Q 024842          101 -LFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLE  179 (262)
Q Consensus       101 -~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~  179 (262)
                       ...+|.++.+++.+.          ..+..|+.||.+ ..+|..+-......+..++|..+=+++-.++.||.|||++ 
T Consensus       100 r~~~CPf~V~FyGa~~----------regdvwIcME~M-~tSldkfy~~v~~~g~~ipE~vlGkIa~Svv~al~~L~~k-  167 (282)
T KOG0984|consen  100 RTVDCPFTVHFYGALF----------REGDVWICMELM-DTSLDKFYRKVLKKGGTIPEDVLGKIAVSVVHALEFLHSK-  167 (282)
T ss_pred             cCCCCCeEEEeehhhh----------ccccEEEeHHHh-hhhHHHHHHHHHhcCCcCchHHhhHhHHHHHHHHHHHHHH-
Confidence             457999999999874          367899999965 4577776666666788899999999999999999999984 


Q ss_pred             CCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC----ccCcccCCcccchhhhhhhhhhhhhcCcccchheeh
Q 024842          180 PPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILM  255 (262)
Q Consensus       180 ~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~  255 (262)
                      ..++|||+||.|||++.++    .+|++|||.+-...+..    ..|-..|++||.+-.-.-. .-+--++||||+|+.|
T Consensus       168 L~vIHRDvKPsNiLIn~~G----qVKiCDFGIsG~L~dSiAkt~daGCkpYmaPEri~~e~n~-~gY~vksDvWSLGItm  242 (282)
T KOG0984|consen  168 LSVIHRDVKPSNILINYDG----QVKICDFGISGYLVDSIAKTMDAGCKPYMAPERINPELNQ-KGYSVKSDVWSLGITM  242 (282)
T ss_pred             hhhhhccCCcceEEEccCC----cEEEcccccceeehhhhHHHHhcCCCccCChhhcCcccCc-ccceeehhhhhhhhhh
Confidence            4499999999999998888    79999999998776554    3577899999877443222 1222357999999999


Q ss_pred             eecccCC
Q 024842          256 RELMFGR  262 (262)
Q Consensus       256 ~~l~~G~  262 (262)
                      +||.++|
T Consensus       243 iElA~lr  249 (282)
T KOG0984|consen  243 IEMAILR  249 (282)
T ss_pred             hhhhhcc
Confidence            9998886

>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

Probab=99.95  E-value=1e-27  Score=200.40  Aligned_cols=206  Identities=20%  Similarity=0.298  Sum_probs=147.7

Q ss_pred             CceeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc-chHHHHHHHHHHH
Q 024842           19 GDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ-NNEQLEMVREEIR   97 (262)
Q Consensus        19 ~~~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~-~~~~~~~~~~E~~   97 (262)
                      ....+...+|++.+.||+|+||.||+|++...++...               .....+++|..... .....+.+.+|+.
T Consensus         5 ~~~~~~~~~~~i~~~ig~G~~g~v~~~~~~~~~~~~~---------------~~~~~vaiK~~~~~~~~~~~~~~~~E~~   69 (334)
T cd05100           5 PKWELSRTRLTLGKPLGEGCFGQVVMAEAIGIDKDKP---------------NKPVTVAVKMLKDDATDKDLSDLVSEME   69 (334)
T ss_pred             cccccCHhHeeecceeccccCCcEEEEEEeccCCccC---------------CcceeEEEEEcccccCHHHHHHHHHHHH
Confidence            3444566789999999999999999998765332110               01235788876643 2344577889999


Q ss_pred             HhhhC-CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhh------------cCCCCCHHHHHHH
Q 024842           98 VSSLF-SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQT------------KKEFFSTSDVLQI  164 (262)
Q Consensus        98 ~l~~l-~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~------------~~~~~~~~~~~~i  164 (262)
                      +++.+ +||||+++++.+          ...+..+++|||+.+++|.+++.....            ....++..++..+
T Consensus        70 ~l~~l~~h~~iv~~~~~~----------~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  139 (334)
T cd05100          70 MMKMIGKHKNIINLLGAC----------TQDGPLYVLVEYASKGNLREYLRARRPPGMDYSFDTCKLPEEQLTFKDLVSC  139 (334)
T ss_pred             HHHhhcCCCCeeeeeEEE----------ccCCceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHH
Confidence            99999 799999999987          335678999999999999998864321            1234788899999


Q ss_pred             HHHHHHHHHHHHcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-------ccCcccCCcccchhhhhh
Q 024842          165 FYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-------ALGQRRYSCRNGLLSIVL  237 (262)
Q Consensus       165 ~~ql~~~l~~lH~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-------~~~~~~~~~~~d~~s~g~  237 (262)
                      +.|++.||.|||+++  ++||||||+||+++.++    .++|+|||++.......       ......|.+||.+..-. 
T Consensus       140 ~~qi~~al~~LH~~g--ivH~dlkp~Nill~~~~----~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-  212 (334)
T cd05100         140 AYQVARGMEYLASQK--CIHRDLAARNVLVTEDN----VMKIADFGLARDVHNIDYYKKTTNGRLPVKWMAPEALFDRV-  212 (334)
T ss_pred             HHHHHHHHHHHHHCC--eeccccccceEEEcCCC----cEEECCcccceecccccccccccCCCcCceEcCHHHhccCC-
Confidence            999999999999988  99999999999998776    69999999987654321       11123455555332211 


Q ss_pred             hhhhhhhcCcccchheeheeccc
Q 024842          238 HLSELLSCGTVRVIQILMRELMF  260 (262)
Q Consensus       238 ~~~e~~~~~~v~~~g~~~~~l~~  260 (262)
                          .....|+|++|+++|||++
T Consensus       213 ----~~~~~Di~slG~il~el~~  231 (334)
T cd05100         213 ----YTHQSDVWSFGVLLWEIFT  231 (334)
T ss_pred             ----cCchhhhHHHHHHHHHHHh
Confidence                1123456666666666554

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

Probab=99.95  E-value=3.6e-28  Score=195.69  Aligned_cols=184  Identities=19%  Similarity=0.218  Sum_probs=138.8

Q ss_pred             EEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccch-HHHHHHHHHHHHhhhCCCCCccch
Q 024842           32 RQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNN-EQLEMVREEIRVSSLFSHRNLLPL  110 (262)
Q Consensus        32 ~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~  110 (262)
                      +.||+|+||.||+|.+...+.                   ....+++|.+..... ...+.+..|+.+++.+.|+|++++
T Consensus         1 ~~ig~G~~g~v~~~~~~~~~~-------------------~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~   61 (257)
T cd05060           1 KELGHGNFGSVVKGVYLMKSG-------------------KEVEVAVKTLKQEHIAAGKKEFLREASVMAQLDHPCIVRL   61 (257)
T ss_pred             CccCccCceeEEEeEeeccCC-------------------CcceEEEEecccccchHHHHHHHHHHHHHHhcCCCCeeeE
Confidence            469999999999998765431                   124688887765543 345678899999999999999999


Q ss_pred             hhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeeecCCCCC
Q 024842          111 LDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPG  190 (262)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~dikp~  190 (262)
                      ++.+.           ....+++|+++.+++|.+++.    ....+++..++.++.|++.||.|||..+  ++|+||||+
T Consensus        62 ~~~~~-----------~~~~~~v~e~~~~~~L~~~l~----~~~~~~~~~~~~~~~qi~~~l~~lh~~~--i~H~di~p~  124 (257)
T cd05060          62 IGVCK-----------GEPLMLVMELAPLGPLLKYLK----KRREIPVSDLKELAHQVAMGMAYLESKH--FVHRDLAAR  124 (257)
T ss_pred             EEEEc-----------CCceEEEEEeCCCCcHHHHHH----hCCCCCHHHHHHHHHHHHHHHHHHhhcC--eeccCcccc
Confidence            98652           345799999999999999886    3346899999999999999999999988  999999999


Q ss_pred             cEEEecCCCCCCceEEeeccceeeccccCc--------cCcccCCcccchhhhhhhhhhhhhcCcccchheeheeccc
Q 024842          191 NILITCRKGQPPLAILMDFGSARPAQSKFA--------LGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMF  260 (262)
Q Consensus       191 Nill~~~~~~~~~~kl~Dfg~a~~~~~~~~--------~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~  260 (262)
                      ||+++.++    .++|+|||++........        ..+..|.+||.+..-.     .-..+|+|++|+++|+|++
T Consensus       125 nili~~~~----~~kl~df~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-----~~~~~Di~slG~~l~~~~~  193 (257)
T cd05060         125 NVLLVNRH----QAKISDFGMSRALGAGSDYYRATTAGRWPLKWYAPECINYGK-----FSSKSDVWSYGVTLWEAFS  193 (257)
T ss_pred             eEEEcCCC----cEEeccccccceeecCCcccccccCccccccccCHHHhcCCC-----CCccchHHHHHHHHHHHHc
Confidence            99998776    699999999886533221        0112455555432211     1124677777777777765

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi

>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

Probab=99.95  E-value=4.4e-28  Score=202.19  Aligned_cols=194  Identities=24%  Similarity=0.319  Sum_probs=149.0

Q ss_pred             ceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc--hHHHHHHHHHHHHhhhCCC
Q 024842           27 RYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN--NEQLEMVREEIRVSSLFSH  104 (262)
Q Consensus        27 ~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~--~~~~~~~~~E~~~l~~l~h  104 (262)
                      +|++.+.||.|++|.||+|++..+++                      .+++|++....  ....+.+.+|+.+++.++|
T Consensus         1 ~y~i~~~ig~g~~~~v~~~~~~~~~~----------------------~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~~   58 (330)
T cd07834           1 RYELLKPIGSGAYGVVCSAVDKRTGR----------------------KVAIKKISNVFDDLIDAKRILREIKLLRHLRH   58 (330)
T ss_pred             CceeeeeecCCCCeEEEEEEeCCCCc----------------------EEEEEeeccccccchhhhhHHHHHHHHHhcCC
Confidence            58999999999999999999876544                      57777665432  3445678899999999999


Q ss_pred             CCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeee
Q 024842          105 RNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAH  184 (262)
Q Consensus       105 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH  184 (262)
                      +|++++.+.+...     ........|++|+++. ++|.+++.    ....+++..++.++.|++.||.+||+.+  ++|
T Consensus        59 ~~i~~~~~~~~~~-----~~~~~~~~~lv~e~~~-~~l~~~l~----~~~~l~~~~~~~i~~~l~~~l~~LH~~g--i~H  126 (330)
T cd07834          59 ENIIGLLDILRPP-----SPEDFNDVYIVTELME-TDLHKVIK----SPQPLTDDHIQYFLYQILRGLKYLHSAN--VIH  126 (330)
T ss_pred             cchhhhhhhhccc-----CcccccceEEEecchh-hhHHHHHh----CCCCCCHHHHHHHHHHHHHHHHHHHhCC--eec
Confidence            9999999987421     0012246899999877 47877765    4447999999999999999999999998  999


Q ss_pred             cCCCCCcEEEecCCCCCCceEEeeccceeeccccC--------ccCcccCCcccchhhhhhhhhhhhhcCcccchheehe
Q 024842          185 NDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF--------ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMR  256 (262)
Q Consensus       185 ~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~--------~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~  256 (262)
                      +||||+||+++.++    .++|+|||++.......        ..++..|.+||.+....    ......|+|++|++++
T Consensus       127 ~dlkp~nili~~~~----~~~L~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~----~~~~~sDi~slG~il~  198 (330)
T cd07834         127 RDLKPSNILVNSNC----DLKICDFGLARGVDPDEDEKGFLTEYVVTRWYRAPELLLSSS----RYTKAIDIWSVGCIFA  198 (330)
T ss_pred             CCCCHHHEEEcCCC----CEEEcccCceEeecccccccccccccccccCcCCceeeeccc----CCCcchhHHHHHHHHH
Confidence            99999999998776    79999999998765442        23455567777653321    1222467888888888


Q ss_pred             ecccCC
Q 024842          257 ELMFGR  262 (262)
Q Consensus       257 ~l~~G~  262 (262)
                      +|++|+
T Consensus       199 ~l~~g~  204 (330)
T cd07834         199 ELLTRK  204 (330)
T ss_pred             HHHcCC
Confidence            887774

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and

>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

Probab=99.95  E-value=3e-28  Score=201.26  Aligned_cols=194  Identities=27%  Similarity=0.357  Sum_probs=149.2

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc---chHHHHHHHHHHHHhhh
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ---NNEQLEMVREEIRVSSL  101 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~---~~~~~~~~~~E~~~l~~  101 (262)
                      ...|++.+.||+|+||.||+|.+..+++                      .+++|.+...   .....+.+.+|+.+++.
T Consensus        14 ~~~y~~~~~lg~g~~g~vy~~~~~~~~~----------------------~v~iK~~~~~~~~~~~~~~~~~~Ei~~l~~   71 (307)
T cd06607          14 EKLFTDLREIGHGSFGAVYFARDVRTNE----------------------VVAIKKMSYSGKQSNEKWQDIIKEVRFLQQ   71 (307)
T ss_pred             chhhhhheeecCCCCeEEEEEEEcCCCc----------------------EEEEEEEeccccCcHHHHHHHHHHHHHHHh
Confidence            3569999999999999999999876544                      6777766432   23344678899999999


Q ss_pred             CCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCC
Q 024842          102 FSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPP  181 (262)
Q Consensus       102 l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~  181 (262)
                      ++|||++++.+.+.          ..+..++++||+. +++.+++..   ....+++..+..++.|++.||.|||+.+  
T Consensus        72 l~h~niv~~~~~~~----------~~~~~~lv~e~~~-g~l~~~~~~---~~~~l~~~~~~~~~~ql~~~L~~LH~~~--  135 (307)
T cd06607          72 LRHPNTIEYKGCYL----------REHTAWLVMEYCL-GSASDILEV---HKKPLQEVEIAAICHGALQGLAYLHSHE--  135 (307)
T ss_pred             CCCCCEEEEEEEEE----------eCCeEEEEHHhhC-CCHHHHHHH---cccCCCHHHHHHHHHHHHHHHHHHHHCC--
Confidence            99999999999873          3566899999876 566665542   2345899999999999999999999988  


Q ss_pred             eeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheeccc
Q 024842          182 YAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMF  260 (262)
Q Consensus       182 ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~  260 (262)
                      ++|+||+|+||+++.++    .++|+|||++....... ..++..|.+||.+.+....  ......|+|++|+++|+|++
T Consensus       136 i~H~dl~p~nIl~~~~~----~~kL~dfg~~~~~~~~~~~~~~~~y~aPE~~~~~~~~--~~~~~sDv~s~G~il~el~t  209 (307)
T cd06607         136 RIHRDIKAGNILLTEPG----TVKLADFGSASLVSPANSFVGTPYWMAPEVILAMDEG--QYDGKVDVWSLGITCIELAE  209 (307)
T ss_pred             ceecCCCcccEEECCCC----CEEEeecCcceecCCCCCccCCccccCceeeeccCCC--CCCcccchHHHHHHHHHHHc
Confidence            99999999999998776    69999999997664332 3455667777765332111  12234788888888888888


Q ss_pred             CC
Q 024842          261 GR  262 (262)
Q Consensus       261 G~  262 (262)
                      |+
T Consensus       210 g~  211 (307)
T cd06607         210 RK  211 (307)
T ss_pred             CC
Confidence            74

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily

>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

Probab=99.95  E-value=2.7e-28  Score=201.71  Aligned_cols=195  Identities=22%  Similarity=0.279  Sum_probs=145.8

Q ss_pred             cCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc--hHHHHHHHHHHHHhhh
Q 024842           24 NENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN--NEQLEMVREEIRVSSL  101 (262)
Q Consensus        24 ~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~--~~~~~~~~~E~~~l~~  101 (262)
                      ..++|++.+.||+|+||.||+|.+..+++                      .|++|.+....  ........+|+.+++.
T Consensus         5 ~~~~y~~~~~ig~g~~~~v~~~~~~~~~~----------------------~vaiK~~~~~~~~~~~~~~~~~E~~~l~~   62 (309)
T cd07845           5 SVTEFEKLNRIGEGTYGIVYRARDTTSGE----------------------IVALKKVRMDNERDGIPISSLREITLLLN   62 (309)
T ss_pred             cccceeEeeeeeecCCEEEEEEEECCCCc----------------------EEEEEEEEeccCCCCCcchhhHHHHHHHh
Confidence            45789999999999999999999887655                      56676654332  1112345679999999


Q ss_pred             CCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCC
Q 024842          102 FSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPP  181 (262)
Q Consensus       102 l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~  181 (262)
                      ++|+|++++++.+..        ......+++||++. ++|.+++..   ....+++..++.++.|++.||.|||+.+  
T Consensus        63 l~h~~i~~~~~~~~~--------~~~~~~~lv~e~~~-~~l~~~l~~---~~~~l~~~~~~~~~~qi~~~l~~lH~~~--  128 (309)
T cd07845          63 LRHPNIVELKEVVVG--------KHLDSIFLVMEYCE-QDLASLLDN---MPTPFSESQVKCLMLQLLRGLQYLHENF--  128 (309)
T ss_pred             CCCCCCcceEEEEec--------CCCCeEEEEEecCC-CCHHHHHHh---cccCCCHHHHHHHHHHHHHHHHHHHhCC--
Confidence            999999999988731        23356899999886 478777653   2355899999999999999999999999  


Q ss_pred             eeecCCCCCcEEEecCCCCCCceEEeeccceeeccccCc-----cCcccCCcccchhhhhhhhhhhhhcCcccchheehe
Q 024842          182 YAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKFA-----LGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMR  256 (262)
Q Consensus       182 ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~~-----~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~  256 (262)
                      ++|+||||+||+++.++    .++|+|||.+........     ..+..|.+||.+....    ......|+|++|+++|
T Consensus       129 i~H~dl~p~nil~~~~~----~~kL~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~----~~~~~~DvwslG~il~  200 (309)
T cd07845         129 IIHRDLKVSNLLLTDKG----CLKIADFGLARTYGLPAKPMTPKVVTLWYRAPELLLGCT----TYTTAIDMWAVGCILA  200 (309)
T ss_pred             eecCCCCHHHEEECCCC----CEEECccceeeecCCccCCCCcccccccccChhhhcCCC----CcCchHHHHHHHHHHH
Confidence            99999999999998766    699999999987654321     2234466666442211    1122467888888888


Q ss_pred             ecccCC
Q 024842          257 ELMFGR  262 (262)
Q Consensus       257 ~l~~G~  262 (262)
                      +|++|+
T Consensus       201 el~~g~  206 (309)
T cd07845         201 ELLAHK  206 (309)
T ss_pred             HHHhCC
Confidence            877764

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing

>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

Probab=99.95  E-value=8.3e-28  Score=193.49  Aligned_cols=190  Identities=20%  Similarity=0.309  Sum_probs=140.2

Q ss_pred             ecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhC
Q 024842           23 INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLF  102 (262)
Q Consensus        23 ~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l  102 (262)
                      ++.++|++.+.||+|+||.||++....                        ..+++|......  ..+.+.+|+.+++.+
T Consensus         3 ~~~~~~~~~~~lg~g~~~~v~~~~~~~------------------------~~~~~k~~~~~~--~~~~~~~e~~~l~~l   56 (256)
T cd05082           3 LNMKELKLLQTIGKGEFGDVMLGDYRG------------------------NKVAVKCIKNDA--TAQAFLAEASVMTQL   56 (256)
T ss_pred             ccHHhCeeeeeecccCCCeEEEEEEcC------------------------CcEEEEEeCCCc--hHHHHHHHHHHHHhC
Confidence            456789999999999999999997642                        256777664332  235688999999999


Q ss_pred             CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCe
Q 024842          103 SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPY  182 (262)
Q Consensus       103 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~i  182 (262)
                      +|+|++++++.+.         ......+++|||+.+++|.+++...  ....+++..++.++.|++.||.|||+++  +
T Consensus        57 ~~~~i~~~~~~~~---------~~~~~~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~~~~~i~~~l~~lH~~~--i  123 (256)
T cd05082          57 RHSNLVQLLGVIV---------EEKGGLYIVTEYMAKGSLVDYLRSR--GRSVLGGDCLLKFSLDVCEAMEYLEANN--F  123 (256)
T ss_pred             CCCCeeeEEEEEE---------cCCCceEEEEECCCCCcHHHHHHhc--CCCCCCHHHHHHHHHHHHHHHHHHHhCC--E
Confidence            9999999998653         2345689999999999999987532  2234889999999999999999999998  9


Q ss_pred             eecCCCCCcEEEecCCCCCCceEEeeccceeeccccC--ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheeccc
Q 024842          183 AHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF--ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMF  260 (262)
Q Consensus       183 vH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~--~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~  260 (262)
                      +|+||||+||+++.++    .++|+|||++.......  ......|.+||.+..-.     ....+|+|++|+++|+|++
T Consensus       124 ~H~dlkp~nil~~~~~----~~kl~dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~-----~~~~~Dv~slG~i~~~l~~  194 (256)
T cd05082         124 VHRDLAARNVLVSEDN----VAKVSDFGLTKEASSTQDTGKLPVKWTAPEALREKK-----FSTKSDVWSFGILLWEIYS  194 (256)
T ss_pred             eccccchheEEEcCCC----cEEecCCccceeccccCCCCccceeecCHHHHccCC-----CCchhhhHHHHHHHHHHHh
Confidence            9999999999998776    69999999988654322  12223455555322111     1123455555555555554

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re

>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

Probab=99.95  E-value=2.3e-28  Score=199.59  Aligned_cols=192  Identities=24%  Similarity=0.326  Sum_probs=143.8

Q ss_pred             ceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccch-HHHHHHHHHHHHhhhCCCC
Q 024842           27 RYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNN-EQLEMVREEIRVSSLFSHR  105 (262)
Q Consensus        27 ~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~-~~~~~~~~E~~~l~~l~h~  105 (262)
                      +|++.+.||.|++|.||+|++..+++                      .+++|.+..... ...+.+.+|+.+++.++|+
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~----------------------~~~iK~~~~~~~~~~~~~~~~E~~~l~~l~h~   58 (284)
T cd07836           1 NFKQLEKLGEGTYATVYKGRNRTTGE----------------------IVALKEIHLDAEEGTPSTAIREISLMKELKHE   58 (284)
T ss_pred             CceEeeeeccCCceEEEEEEECCCCe----------------------EEEEEEecccccccchHHHHHHHHHHHhhcCC
Confidence            58999999999999999999876654                      577776654422 2235567899999999999


Q ss_pred             CccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeeec
Q 024842          106 NLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHN  185 (262)
Q Consensus       106 ~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~  185 (262)
                      |++++++.+.          ..+..+++|||+.+ +|.+++.... ....+++..+..++.|++.||.|||+.+  ++|+
T Consensus        59 ~i~~~~~~~~----------~~~~~~lv~e~~~~-~l~~~~~~~~-~~~~~~~~~~~~~~~qi~~~l~~lH~~~--i~h~  124 (284)
T cd07836          59 NIVRLHDVIH----------TENKLMLVFEYMDK-DLKKYMDTHG-VRGALDPNTVKSFTYQLLKGIAFCHENR--VLHR  124 (284)
T ss_pred             CEeeeeeeEe----------eCCcEEEEEecCCc-cHHHHHHhcC-CCCCcCHHHHHHHHHHHHHHHHHHHHCC--eeeC
Confidence            9999999873          35678999999874 7877765322 1345899999999999999999999998  9999


Q ss_pred             CCCCCcEEEecCCCCCCceEEeeccceeeccccC-----ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheeccc
Q 024842          186 DVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMF  260 (262)
Q Consensus       186 dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~  260 (262)
                      ||+|+||+++.++    .++|+|||++.......     ..++..|.+||.+..-.    .....+|+|++|+++++|++
T Consensus       125 dl~p~ni~~~~~~----~~~l~d~g~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~----~~~~~~Dv~slG~~l~~l~~  196 (284)
T cd07836         125 DLKPQNLLINKRG----ELKLADFGLARAFGIPVNTFSNEVVTLWYRAPDVLLGSR----TYSTSIDIWSVGCIMAEMIT  196 (284)
T ss_pred             CCCHHHEEECCCC----cEEEeecchhhhhcCCccccccccccccccChHHhcCCC----CCCcHHHHHHHHHHHHHHHh
Confidence            9999999998766    69999999987543221     22344566665432110    11123677777777777777


Q ss_pred             CC
Q 024842          261 GR  262 (262)
Q Consensus       261 G~  262 (262)
                      |+
T Consensus       197 g~  198 (284)
T cd07836         197 GR  198 (284)
T ss_pred             CC
Confidence            64

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.

>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

Probab=99.95  E-value=8.8e-28  Score=193.07  Aligned_cols=193  Identities=21%  Similarity=0.352  Sum_probs=150.5

Q ss_pred             ceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc--chHHHHHHHHHHHHhhhCCC
Q 024842           27 RYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ--NNEQLEMVREEIRVSSLFSH  104 (262)
Q Consensus        27 ~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~--~~~~~~~~~~E~~~l~~l~h  104 (262)
                      +|++.+.||+|++|.||++.+..+++                      .+++|.+...  .......+.+|+.+++.++|
T Consensus         1 ~y~~~~~i~~g~~~~v~~~~~~~~~~----------------------~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~   58 (256)
T cd08530           1 DFKVLKKLGKGSYGSVYKVKRLSDNQ----------------------FYALKEVDLGSMSQKEREDAVNEIRILASVNH   58 (256)
T ss_pred             CceEeeeecCCCceeEEEEEECCCCC----------------------EEEEEEEehhhccHHHHHHHHHHHHHHHhCCC
Confidence            58999999999999999998876544                      5777766543  23344667789999999999


Q ss_pred             CCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeee
Q 024842          105 RNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAH  184 (262)
Q Consensus       105 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH  184 (262)
                      +||+++.+.+.          .....++++|++.+++|.+++.........+++..++.++.|++.||.+||+.+  ++|
T Consensus        59 ~~i~~~~~~~~----------~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lh~~~--i~h  126 (256)
T cd08530          59 PNIISYKEAFL----------DGNKLCIVMEYAPFGDLSKAISKRKKKRKLIPEQEIWRIFIQLLRGLQALHEQK--ILH  126 (256)
T ss_pred             CCchhhhhhhc----------cCCEEEEEehhcCCCCHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhCC--ccc
Confidence            99999998874          357799999999999999988755444567899999999999999999999998  999


Q ss_pred             cCCCCCcEEEecCCCCCCceEEeeccceeeccccC---ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecccC
Q 024842          185 NDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF---ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMFG  261 (262)
Q Consensus       185 ~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~---~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~G  261 (262)
                      +||+|+||+++.++    .++|+|||++.......   ..++..|.+||.+....     .-...|+|++|+++++|++|
T Consensus       127 ~~l~~~ni~~~~~~----~~kl~d~g~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~-----~~~~~D~~slG~~~~~l~~g  197 (256)
T cd08530         127 RDLKSANILLVAND----LVKIGDLGISKVLKKNMAKTQIGTPHYMAPEVWKGRP-----YSYKSDIWSLGCLLYEMATF  197 (256)
T ss_pred             CCCCcceEEEecCC----cEEEeeccchhhhccCCcccccCCccccCHHHHCCCC-----CCchhhHHHHHHHHHHHHhC
Confidence            99999999998765    69999999987665432   23445566555432211     11236788888888887776


Q ss_pred             C
Q 024842          262 R  262 (262)
Q Consensus       262 ~  262 (262)
                      +
T Consensus       198 ~  198 (256)
T cd08530         198 A  198 (256)
T ss_pred             C
Confidence            4

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an

>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]

Probab=99.95  E-value=1.1e-29  Score=207.26  Aligned_cols=206  Identities=21%  Similarity=0.285  Sum_probs=163.5

Q ss_pred             ceeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc-------hHHHHHH
Q 024842           20 DVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN-------NEQLEMV   92 (262)
Q Consensus        20 ~~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~-------~~~~~~~   92 (262)
                      +-..-.++|-++..||+|+|++||+|.+...+++                      +|+|+-....       ...-+..
T Consensus       457 DHptLn~RYLlLhLLGrGGFSEVyKAFDl~EqRY----------------------vAvKIHqlNK~WrdEKKeNYhKHA  514 (775)
T KOG1151|consen  457 DHPTLNDRYLLLHLLGRGGFSEVYKAFDLTEQRY----------------------VAVKIHQLNKNWRDEKKENYHKHA  514 (775)
T ss_pred             cCcchHHHHHHHHHhccccHHHHHHhcccchhhe----------------------eeEeeehhccchhhHhhhhHHHHH
Confidence            3334467899999999999999999999887665                      4444332221       1112456


Q ss_pred             HHHHHHhhhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHH
Q 024842           93 REEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGL  172 (262)
Q Consensus        93 ~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l  172 (262)
                      .+|..+.+.|.||.|++++++|.         -+.+.++-|+|||+|.+|.-+++    ....+++.++..|+.||++||
T Consensus       515 cREyrIHKeLDHpRIVKlYDyfs---------lDtdsFCTVLEYceGNDLDFYLK----QhklmSEKEARSIiMQiVnAL  581 (775)
T KOG1151|consen  515 CREYRIHKELDHPRIVKLYDYFS---------LDTDSFCTVLEYCEGNDLDFYLK----QHKLMSEKEARSIIMQIVNAL  581 (775)
T ss_pred             HHHHhhhhccCcceeeeeeeeee---------eccccceeeeeecCCCchhHHHH----hhhhhhHHHHHHHHHHHHHHH
Confidence            67999999999999999999984         44677899999999999988887    555699999999999999999


Q ss_pred             HHHHcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC------------ccCcccCCcccchhhhhhhhh
Q 024842          173 KHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF------------ALGQRRYSCRNGLLSIVLHLS  240 (262)
Q Consensus       173 ~~lH~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~------------~~~~~~~~~~~d~~s~g~~~~  240 (262)
                      .||.+..+||+|-||||.|||+.... -...+||+|||+++.++...            ..|++.|.+|+.+ =.|--.+
T Consensus       582 ~YLNEikpPIIHYDLKPgNILLv~Gt-acGeIKITDFGLSKIMdddSy~~vdGmeLTSQgAGTYWYLPPEcF-vVgkePP  659 (775)
T KOG1151|consen  582 KYLNEIKPPIIHYDLKPGNILLVNGT-ACGEIKITDFGLSKIMDDDSYNSVDGMELTSQGAGTYWYLPPECF-VVGKEPP  659 (775)
T ss_pred             HHHhccCCCeeeeccCCccEEEecCc-ccceeEeeecchhhhccCCccCcccceeeecccCceeeecCccee-ecCCCCC
Confidence            99999999999999999999996543 34479999999999887543            2567777777754 2333345


Q ss_pred             hhhhcCcccchheeheecccCC
Q 024842          241 ELLSCGTVRVIQILMRELMFGR  262 (262)
Q Consensus       241 e~~~~~~v~~~g~~~~~l~~G~  262 (262)
                      .+...-||||.|++.|.+++||
T Consensus       660 KIsnKVDVWSvGVIFyQClYGr  681 (775)
T KOG1151|consen  660 KISNKVDVWSVGVIFYQCLYGR  681 (775)
T ss_pred             ccccceeeEeeehhhhhhhccC
Confidence            5666689999999999999997

>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

Probab=99.95  E-value=3.7e-28  Score=202.47  Aligned_cols=197  Identities=25%  Similarity=0.336  Sum_probs=147.9

Q ss_pred             CceeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc--chHHHHHHHHHH
Q 024842           19 GDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ--NNEQLEMVREEI   96 (262)
Q Consensus        19 ~~~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~--~~~~~~~~~~E~   96 (262)
                      ++++...++|++.+.||.|+||.||+|.+..+++                      .+++|++...  .....+.+..|+
T Consensus         3 ~~~~~~~~~y~~~~~ig~g~~g~v~~~~~~~~~~----------------------~vaiK~~~~~~~~~~~~~~~~~E~   60 (328)
T cd07856           3 GTVFEITNRYVDLQPVGMGAFGLVCSARDQLTGQ----------------------NVAIKKIMKPFSTPVLAKRTYREL   60 (328)
T ss_pred             cceeccccceEEEEeecccCCeEEEEEEECCCCC----------------------EEEEEEecccccccchhHHHHHHH
Confidence            5667778899999999999999999999887655                      5677765432  223346677899


Q ss_pred             HHhhhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHH
Q 024842           97 RVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMH  176 (262)
Q Consensus        97 ~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH  176 (262)
                      .+++.++|||++++.+.+.         ......+++++++ +++|.+++.     ...+++..+..++.|++.||.|||
T Consensus        61 ~~l~~l~hpniv~~~~~~~---------~~~~~~~lv~e~~-~~~L~~~~~-----~~~~~~~~~~~~~~ql~~aL~~LH  125 (328)
T cd07856          61 KLLKHLRHENIISLSDIFI---------SPLEDIYFVTELL-GTDLHRLLT-----SRPLEKQFIQYFLYQILRGLKYVH  125 (328)
T ss_pred             HHHHhcCCCCeeeEeeeEe---------cCCCcEEEEeehh-ccCHHHHHh-----cCCCCHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998873         2234688999987 567877663     345888999999999999999999


Q ss_pred             cCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC--ccCcccCCcccchhhhhhhhhhhhhcCcccchhee
Q 024842          177 SLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF--ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQIL  254 (262)
Q Consensus       177 ~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~--~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~  254 (262)
                      +.+  ++|+||+|+||+++.++    .++|+|||.+.......  ..++..|.+||.+....    ......|+|++|++
T Consensus       126 ~~~--iiH~dl~p~Nili~~~~----~~~l~dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~----~~~~~~Dv~slG~i  195 (328)
T cd07856         126 SAG--VVHRDLKPSNILINENC----DLKICDFGLARIQDPQMTGYVSTRYYRAPEIMLTWQ----KYDVEVDIWSAGCI  195 (328)
T ss_pred             hCC--cccCCCCHHHEeECCCC----CEEeCccccccccCCCcCCCcccccccCceeeeccC----CcCcHHHHHHHHHH
Confidence            998  99999999999998665    69999999987654322  23444566666442211    01123577777777


Q ss_pred             heecccCC
Q 024842          255 MRELMFGR  262 (262)
Q Consensus       255 ~~~l~~G~  262 (262)
                      +++|++|+
T Consensus       196 l~el~tg~  203 (328)
T cd07856         196 FAEMLEGK  203 (328)
T ss_pred             HHHHHhCC
Confidence            77777764

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U

>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

Probab=99.95  E-value=5.9e-28  Score=194.24  Aligned_cols=189  Identities=21%  Similarity=0.260  Sum_probs=140.2

Q ss_pred             cCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCC
Q 024842           24 NENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFS  103 (262)
Q Consensus        24 ~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~  103 (262)
                      +..+|++.+.||+|++|.||++.+...                       ..+++|.+...... ...+.+|+++++.++
T Consensus         2 ~~~~~~~~~~ig~g~~g~v~~~~~~~~-----------------------~~~~~k~~~~~~~~-~~~~~~e~~~l~~l~   57 (256)
T cd05112           2 HPSELTLVQEIGSGQFGLVWLGYWLEK-----------------------RKVAIKTIREGAMS-EEDFIEEAQVMMKLS   57 (256)
T ss_pred             ChhHeEEEeeecCcccceEEEEEEeCC-----------------------CeEEEEECCCCCCC-HHHHHHHHHHHHhCC
Confidence            456899999999999999999987532                       24677765543222 246788999999999


Q ss_pred             CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCee
Q 024842          104 HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYA  183 (262)
Q Consensus       104 h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~iv  183 (262)
                      |||++++++.+          ......+++|+|+.+++|.+++..   ....++++.++.++.|++.+|++||+.+  ++
T Consensus        58 ~~~i~~~~~~~----------~~~~~~~~v~e~~~~~~L~~~~~~---~~~~~~~~~~~~~~~~l~~~l~~lH~~~--i~  122 (256)
T cd05112          58 HPKLVQLYGVC----------TERSPICLVFEFMEHGCLSDYLRA---QRGKFSQETLLGMCLDVCEGMAYLESSN--VI  122 (256)
T ss_pred             CCCeeeEEEEE----------ccCCceEEEEEcCCCCcHHHHHHh---CccCCCHHHHHHHHHHHHHHHHHHHHCC--cc
Confidence            99999999876          335678999999999999888752   2345899999999999999999999988  99


Q ss_pred             ecCCCCCcEEEecCCCCCCceEEeeccceeeccccCc------cCcccCCcccchhhhhhhhhhhhhcCcccchheehee
Q 024842          184 HNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKFA------LGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRE  257 (262)
Q Consensus       184 H~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~~------~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~  257 (262)
                      |+||||+||+++.++    .++|+|||++........      ..+..|.+|+.+.+-.     .....|+|++|+++|+
T Consensus       123 h~dl~p~ni~i~~~~----~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~~aPe~~~~~~-----~~~~~Dv~slG~~l~e  193 (256)
T cd05112         123 HRDLAARNCLVGENQ----VVKVSDFGMTRFVLDDQYTSSTGTKFPVKWSSPEVFSFSK-----YSSKSDVWSFGVLMWE  193 (256)
T ss_pred             ccccccceEEEcCCC----eEEECCCcceeecccCcccccCCCccchhhcCHhHhccCC-----cChHHHHHHHHHHHHH
Confidence            999999999998665    699999999876543221      1123455555332111     1112466666666666


Q ss_pred             ccc
Q 024842          258 LMF  260 (262)
Q Consensus       258 l~~  260 (262)
                      |++
T Consensus       194 l~~  196 (256)
T cd05112         194 VFS  196 (256)
T ss_pred             HHc
Confidence            655

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ

>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

Probab=99.95  E-value=1.2e-28  Score=202.18  Aligned_cols=194  Identities=22%  Similarity=0.296  Sum_probs=147.0

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccch--HHHHHHHHHHHHhhhC
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNN--EQLEMVREEIRVSSLF  102 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~--~~~~~~~~E~~~l~~l  102 (262)
                      .++|++.+.||.|++|.||+|.+..+++                      .+++|.+.....  .....+.+|+.+++.+
T Consensus         4 ~~~y~~~~~lg~g~~~~v~~~~~~~~~~----------------------~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l   61 (293)
T cd07843           4 VDEYEKLNRIEEGTYGVVYRARDKKTGE----------------------IVALKKLKMEKEKEGFPITSLREINILLKL   61 (293)
T ss_pred             hhhhhhhhhhcCCCCeEEEEEEECCCCc----------------------EEEEEEEeeccccccchhhHHHHHHHHHhc
Confidence            3579999999999999999999876544                      567776654322  2234567899999999


Q ss_pred             CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCe
Q 024842          103 SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPY  182 (262)
Q Consensus       103 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~i  182 (262)
                      +||||+++.+.+..        ......+++|||+. ++|.+++..   ....+++..++.++.|++.||+|||+++  +
T Consensus        62 ~h~ni~~~~~~~~~--------~~~~~~~lv~e~~~-~~L~~~~~~---~~~~l~~~~~~~i~~qi~~aL~~LH~~~--i  127 (293)
T cd07843          62 QHPNIVTVKEVVVG--------SNLDKIYMVMEYVE-HDLKSLMET---MKQPFLQSEVKCLMLQLLSGVAHLHDNW--I  127 (293)
T ss_pred             CCCCEEEEEEEEEe--------cCCCcEEEEehhcC-cCHHHHHHh---ccCCCCHHHHHHHHHHHHHHHHHHHHCC--e
Confidence            99999999987631        22377999999987 488887753   2335899999999999999999999998  9


Q ss_pred             eecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-----ccCcccCCcccchhhhhhhhhhhhhcCcccchheehee
Q 024842          183 AHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRE  257 (262)
Q Consensus       183 vH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~  257 (262)
                      +|+||+|+||+++.++    .++|+|||++.......     ..++..|.+||.+.....    .....|+|++|+++++
T Consensus       128 ~H~dl~p~nili~~~~----~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~----~~~~~Di~slG~~l~~  199 (293)
T cd07843         128 LHRDLKTSNLLLNNRG----ILKICDFGLAREYGSPLKPYTQLVVTLWYRAPELLLGAKE----YSTAIDMWSVGCIFAE  199 (293)
T ss_pred             eeccCCHHHEEECCCC----cEEEeecCceeeccCCccccccccccccccCchhhcCCcc----ccchhhHHHHHHHHHH
Confidence            9999999999998766    69999999998765432     234455666665432111    1224678888888888


Q ss_pred             cccCC
Q 024842          258 LMFGR  262 (262)
Q Consensus       258 l~~G~  262 (262)
                      |++|+
T Consensus       200 l~~g~  204 (293)
T cd07843         200 LLTKK  204 (293)
T ss_pred             HHhCC
Confidence            87774

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the

>PLN00009 cyclin-dependent kinase A; Provisional

Probab=99.95  E-value=6.5e-28  Score=198.01  Aligned_cols=193  Identities=24%  Similarity=0.321  Sum_probs=143.4

Q ss_pred             CceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc--hHHHHHHHHHHHHhhhCC
Q 024842           26 NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN--NEQLEMVREEIRVSSLFS  103 (262)
Q Consensus        26 ~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~--~~~~~~~~~E~~~l~~l~  103 (262)
                      ++|++.+.||+|++|.||+|.+..+++                      .+++|.+....  ......+.+|+.+++.++
T Consensus         2 ~~y~~~~~l~~g~~~~v~~~~~~~~~~----------------------~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~   59 (294)
T PLN00009          2 DQYEKVEKIGEGTYGVVYKARDRVTNE----------------------TIALKKIRLEQEDEGVPSTAIREISLLKEMQ   59 (294)
T ss_pred             CceEEEEEecCCCCEEEEEEEecCCCc----------------------EEEEEehhhccccccchHHHHHHHHHHHhcc
Confidence            579999999999999999999876654                      57777665432  223356778999999999


Q ss_pred             CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCee
Q 024842          104 HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYA  183 (262)
Q Consensus       104 h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~iv  183 (262)
                      |||++++++.+.          .....+++|||+. ++|.+.+...  ....+++..++.++.|++.||+|||+++  ++
T Consensus        60 h~~i~~~~~~~~----------~~~~~~lv~e~~~-~~l~~~~~~~--~~~~~~~~~~~~~~~qi~~aL~~LH~~~--i~  124 (294)
T PLN00009         60 HGNIVRLQDVVH----------SEKRLYLVFEYLD-LDLKKHMDSS--PDFAKNPRLIKTYLYQILRGIAYCHSHR--VL  124 (294)
T ss_pred             CCCEeeEEEEEe----------cCCeEEEEEeccc-ccHHHHHHhC--CCCCcCHHHHHHHHHHHHHHHHHHHhCC--ee
Confidence            999999999873          3567999999985 5777766421  2233688899999999999999999988  99


Q ss_pred             ecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-----ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheec
Q 024842          184 HNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMREL  258 (262)
Q Consensus       184 H~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l  258 (262)
                      |+||+|+||+++.++.   .+||+|||++.......     ..++..|.+||.+..-.    ......|+|++|+++++|
T Consensus       125 H~dl~p~nill~~~~~---~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~----~~~~~~Dv~slG~i~~~l  197 (294)
T PLN00009        125 HRDLKPQNLLIDRRTN---ALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSR----HYSTPVDIWSVGCIFAEM  197 (294)
T ss_pred             CCCCCcceEEEECCCC---EEEEcccccccccCCCccccccCceeecccCHHHHhCCC----CCCcHHHHHHHHHHHHHH
Confidence            9999999999985432   58999999997653221     12344566666442211    112236788888888888


Q ss_pred             ccCC
Q 024842          259 MFGR  262 (262)
Q Consensus       259 ~~G~  262 (262)
                      ++|+
T Consensus       198 ~tg~  201 (294)
T PLN00009        198 VNQK  201 (294)
T ss_pred             HhCC
Confidence            7774

>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases

Probab=99.95  E-value=7.7e-28  Score=192.60  Aligned_cols=190  Identities=23%  Similarity=0.348  Sum_probs=152.7

Q ss_pred             ceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCCCCC
Q 024842           27 RYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSHRN  106 (262)
Q Consensus        27 ~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~h~~  106 (262)
                      +|.+.+.||+|++|.||++.+..+++                      .+++|+.........+.+.+|++.++.++|+|
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~----------------------~~~~k~~~~~~~~~~~~~~~e~~~l~~l~~~~   58 (253)
T cd05122           1 LFEILEKIGKGGFGEVYKARHKRTGK----------------------EVAIKVIKLESKEKKEKIINEIQILKKCKHPN   58 (253)
T ss_pred             CceeeeeeccCCceEEEEEEECCCCc----------------------EEEEEEecccchhHHHHHHHHHHHHHhCCCCC
Confidence            48899999999999999999876543                      67888776665556678899999999999999


Q ss_pred             ccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeeecC
Q 024842          107 LLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHND  186 (262)
Q Consensus       107 i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~d  186 (262)
                      ++++.+.+.          .....+++++++.+++|.+++..   ....+++..++.++.|++.||.+||+.+  ++|+|
T Consensus        59 i~~~~~~~~----------~~~~~~l~~e~~~~~~L~~~~~~---~~~~~~~~~~~~i~~~i~~~l~~lh~~~--i~h~d  123 (253)
T cd05122          59 IVKYYGSYL----------KKDELWIVMEFCSGGSLKDLLKS---TNQTLTESQIAYVCKELLKGLEYLHSNG--IIHRD  123 (253)
T ss_pred             EeEEEEEEe----------cCCeEEEEEecCCCCcHHHHHhh---cCCCCCHHHHHHHHHHHHHHHHHhhcCC--EecCC
Confidence            999999873          24678999999999999988763   2246899999999999999999999988  99999


Q ss_pred             CCCCcEEEecCCCCCCceEEeeccceeeccccC----ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecccCC
Q 024842          187 VKPGNILITCRKGQPPLAILMDFGSARPAQSKF----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMFGR  262 (262)
Q Consensus       187 ikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~G~  262 (262)
                      |+|+||+++.++    .++|+|||.+.......    ..+...|.+||.+.+..     .....|+|++|+++++|++|+
T Consensus       124 l~p~ni~i~~~~----~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~-----~~~~~Dv~slG~il~~l~~g~  194 (253)
T cd05122         124 IKAANILLTSDG----EVKLIDFGLSAQLSDTKARNTMVGTPYWMAPEVINGKP-----YDYKADIWSLGITAIELAEGK  194 (253)
T ss_pred             CCHHHEEEccCC----eEEEeeccccccccccccccceecCCcccCHHHHcCCC-----CCccccHHHHHHHHHHHHhCC
Confidence            999999998766    69999999998765532    34555666666543221     123478888888888888774

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core

>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

Probab=99.95  E-value=5e-28  Score=196.13  Aligned_cols=194  Identities=21%  Similarity=0.378  Sum_probs=146.1

Q ss_pred             ceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc----------chHHHHHHHHHH
Q 024842           27 RYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ----------NNEQLEMVREEI   96 (262)
Q Consensus        27 ~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~----------~~~~~~~~~~E~   96 (262)
                      .|++.+.||+|+||.||++.+..++.                     ..+++|.+...          .......+..|+
T Consensus         1 ~y~~~~~ig~G~~~~v~~~~~~~~~~---------------------~~~avk~~~~~~~~~~~~~~~~~~~~~~~~~e~   59 (269)
T cd08528           1 EYAVLEHLGSGAFGCVYKVRKKNNGQ---------------------NLLALKEINVHNPAFGKDKRERDKSIGDIVSEV   59 (269)
T ss_pred             CchhhhhhcCCCCceEEEEEEcCCCC---------------------ceeeeeEeeccccccccccccchHHHHHHHHHH
Confidence            47889999999999999999876221                     24555544321          223345566788


Q ss_pred             HHhh-hCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHH
Q 024842           97 RVSS-LFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHM  175 (262)
Q Consensus        97 ~~l~-~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~l  175 (262)
                      .++. .++|||++++++.+.          ..+..+++|||+.+++|.+++.........+++..++.++.|++.+|.||
T Consensus        60 ~~l~~~~~h~~i~~~~~~~~----------~~~~~~lv~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~l  129 (269)
T cd08528          60 TIIKEQLRHPNIVRYYKTFL----------ENDRLYIVMDLIEGAPLGEHFNSLKEKKQRFTEERIWNIFVQMVLALRYL  129 (269)
T ss_pred             HHHhhcCCCCCeeeEEeeEc----------cCCeEEEEEecCCCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHh
Confidence            8776 479999999999873          36789999999999999998876555566799999999999999999999


Q ss_pred             Hc-CCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC----ccCcccCCcccchhhhhhhhhhhhhcCcccc
Q 024842          176 HS-LEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRV  250 (262)
Q Consensus       176 H~-~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~  250 (262)
                      |+ .+  ++|+||+|+||+++.++    .++|+|||.+.......    ..++..|.+|+.+..-.     .-...|+|+
T Consensus       130 h~~~~--i~H~dl~~~nil~~~~~----~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~-----~~~~~Dv~s  198 (269)
T cd08528         130 HKEKR--IVHRDLTPNNIMLGEDD----KVTITDFGLAKQKQPESKLTSVVGTILYSCPEIVKNEP-----YGEKADVWA  198 (269)
T ss_pred             ccCCc--eeecCCCHHHEEECCCC----cEEEecccceeecccccccccccCcccCcChhhhcCCC-----CchHHHHHH
Confidence            96 66  99999999999998776    69999999998765442    24555677776543211     112357777


Q ss_pred             hheeheecccCC
Q 024842          251 IQILMRELMFGR  262 (262)
Q Consensus       251 ~g~~~~~l~~G~  262 (262)
                      +|+++|+|++|+
T Consensus       199 lG~ll~~l~~g~  210 (269)
T cd08528         199 FGCILYQMCTLQ  210 (269)
T ss_pred             HHHHHHHHHhCC
Confidence            777777777764

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.

>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

Probab=99.95  E-value=6.8e-28  Score=197.34  Aligned_cols=160  Identities=21%  Similarity=0.281  Sum_probs=128.3

Q ss_pred             ecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc-hHHHHHHHHHHHHhhh
Q 024842           23 INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN-NEQLEMVREEIRVSSL  101 (262)
Q Consensus        23 ~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~-~~~~~~~~~E~~~l~~  101 (262)
                      ++.++|++.+.||+|+||.||+|.+.....                 ......+++|.+.... ......+.+|+.+++.
T Consensus         2 ~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~-----------------~~~~~~~aiK~~~~~~~~~~~~~~~~ei~~l~~   64 (288)
T cd05050           2 YPRNNIEYVRDIGQGAFGRVFQARAPGLLP-----------------YEPFTMVAVKMLKEEASADMQADFQREAALMAE   64 (288)
T ss_pred             CChHhceecccccccccccEEEEEEcccCC-----------------CCcceeEEEEecCCCcCHHHHHHHHHHHHHHHh
Confidence            456789999999999999999998753110                 0123478888776543 3334678889999999


Q ss_pred             CCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhh------------------cCCCCCHHHHHH
Q 024842          102 FSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQT------------------KKEFFSTSDVLQ  163 (262)
Q Consensus       102 l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~------------------~~~~~~~~~~~~  163 (262)
                      ++|||++++++.+          ......+++||++.+++|.+++.....                  ....+++..++.
T Consensus        65 l~h~~iv~~~~~~----------~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  134 (288)
T cd05050          65 FDHPNIVKLLGVC----------AVGKPMCLLFEYMAYGDLNEFLRHRSPRAQCSLSHSTSSARKCGLNPLPLSCTEQLC  134 (288)
T ss_pred             cCCCchheEEEEE----------cCCCccEEEEecCCCCCHHHHHHHcCccccccccccccccccccccccccCHHHHHH
Confidence            9999999999877          335568999999999999998863211                  112478889999


Q ss_pred             HHHHHHHHHHHHHcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeec
Q 024842          164 IFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPA  215 (262)
Q Consensus       164 i~~ql~~~l~~lH~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~  215 (262)
                      ++.|++.||.|||+++  ++||||||+||+++.++    .++|+|||++...
T Consensus       135 ~~~~i~~aL~~lH~~~--i~H~dl~p~nil~~~~~----~~~l~dfg~~~~~  180 (288)
T cd05050         135 IAKQVAAGMAYLSERK--FVHRDLATRNCLVGENM----VVKIADFGLSRNI  180 (288)
T ss_pred             HHHHHHHHHHHHHhCC--eecccccHhheEecCCC----ceEECccccceec
Confidence            9999999999999998  99999999999998766    6999999998754

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M

>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

Probab=99.95  E-value=2.7e-28  Score=198.68  Aligned_cols=189  Identities=20%  Similarity=0.283  Sum_probs=147.7

Q ss_pred             CceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc-hHHHHHHHHHHHHhhhCCC
Q 024842           26 NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN-NEQLEMVREEIRVSSLFSH  104 (262)
Q Consensus        26 ~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~-~~~~~~~~~E~~~l~~l~h  104 (262)
                      ..|+..+.||.|+||.||+|.+..+++                      .+++|.+.... ....+.+.+|+.+++.++|
T Consensus         4 ~~y~~~~~lg~g~~~~vy~~~~~~~~~----------------------~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h   61 (277)
T cd06640           4 ELFTKLERIGKGSFGEVFKGIDNRTQQ----------------------VVAIKIIDLEEAEDEIEDIQQEITVLSQCDS   61 (277)
T ss_pred             HhhhhhhhcccCCCeEEEEEEEccCCE----------------------EEEEEEEeccccHHHHHHHHHHHHHHHhCCC
Confidence            468888999999999999999876544                      57777665432 3445778899999999999


Q ss_pred             CCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeee
Q 024842          105 RNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAH  184 (262)
Q Consensus       105 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH  184 (262)
                      ||++++++.+.          .....+++||++.+++|.+++.     ..++++..+..++.|++.||.|||+.+  ++|
T Consensus        62 ~~i~~~~~~~~----------~~~~~~lv~e~~~~~~L~~~i~-----~~~l~~~~~~~~~~~l~~~l~~lh~~~--ivH  124 (277)
T cd06640          62 PYVTKYYGSYL----------KGTKLWIIMEYLGGGSALDLLR-----AGPFDEFQIATMLKEILKGLDYLHSEK--KIH  124 (277)
T ss_pred             CCEeeEEEEEE----------ECCEEEEEEecCCCCcHHHHHh-----cCCCCHHHHHHHHHHHHHHHHHHHhCC--ccC
Confidence            99999999873          3567999999999999998874     245899999999999999999999988  999


Q ss_pred             cCCCCCcEEEecCCCCCCceEEeeccceeeccccCc-----cCcccCCcccchhhhhhhhhhhhhcCcccchheeheecc
Q 024842          185 NDVKPGNILITCRKGQPPLAILMDFGSARPAQSKFA-----LGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELM  259 (262)
Q Consensus       185 ~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~~-----~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~  259 (262)
                      +||+|+||+++.++    .++|+|||++........     .++..|.+||......     .....|+|++|+++|+|+
T Consensus       125 ~dl~p~Nil~~~~~----~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~-----~~~~~Dv~slG~il~el~  195 (277)
T cd06640         125 RDIKAANVLLSEQG----DVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIQQSA-----YDSKADIWSLGITAIELA  195 (277)
T ss_pred             cCCChhhEEEcCCC----CEEEcccccceeccCCccccccccCcccccCHhHhccCC-----CccHHHHHHHHHHHHHHH
Confidence            99999999998766    699999999976543221     2344456665432211     122467888888888877


Q ss_pred             cCC
Q 024842          260 FGR  262 (262)
Q Consensus       260 ~G~  262 (262)
                      +|+
T Consensus       196 tg~  198 (277)
T cd06640         196 KGE  198 (277)
T ss_pred             HCC
Confidence            774

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter

>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

Probab=99.95  E-value=8.8e-28  Score=193.03  Aligned_cols=191  Identities=24%  Similarity=0.283  Sum_probs=150.2

Q ss_pred             ceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc--hHHHHHHHHHHHHhhhCCC
Q 024842           27 RYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN--NEQLEMVREEIRVSSLFSH  104 (262)
Q Consensus        27 ~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~--~~~~~~~~~E~~~l~~l~h  104 (262)
                      +|++.+.||+|++|.||+|.+..+++                      .+++|......  ....+.+.+|+..++.++|
T Consensus         1 ~~~~~~~i~~g~~~~v~~~~~~~~~~----------------------~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~   58 (260)
T cd06606           1 EWTRGELLGRGSFGSVYLALDKDTGE----------------------LMAVKSVELSGDSEEELEALEREIRILSSLQH   58 (260)
T ss_pred             CceeeeEeeecCceEEEEEEECCCCc----------------------EEEEEEeeccccchHHHHHHHHHHHHHHHcCC
Confidence            58899999999999999999876544                      57777665443  2445788899999999999


Q ss_pred             CCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeee
Q 024842          105 RNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAH  184 (262)
Q Consensus       105 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH  184 (262)
                      ||++++++.+..        ......++++|++.+++|.+++.    ....+++..++.++.|++.+|.|||+.+  ++|
T Consensus        59 ~~i~~~~~~~~~--------~~~~~~~lv~e~~~~~~L~~~~~----~~~~~~~~~~~~~~~~l~~~l~~lh~~~--~~h  124 (260)
T cd06606          59 PNIVRYYGSERD--------EEKNTLNIFLEYVSGGSLSSLLK----KFGKLPEPVIRKYTRQILEGLAYLHSNG--IVH  124 (260)
T ss_pred             CCEeeEEEEEec--------CCCCeEEEEEEecCCCcHHHHHH----HcCCCCHHHHHHHHHHHHHHHHHHHHCC--ccc
Confidence            999999988742        11267899999999999999886    3336999999999999999999999988  999


Q ss_pred             cCCCCCcEEEecCCCCCCceEEeeccceeeccccC-------ccCcccCCcccchhhhhhhhhhhhhcCcccchheehee
Q 024842          185 NDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-------ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRE  257 (262)
Q Consensus       185 ~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-------~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~  257 (262)
                      +||+|+||+++.++    .++|+|||.+.......       ..++..|.+||......     .....|+|++|+++++
T Consensus       125 ~dl~p~ni~i~~~~----~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~-----~~~~~Dv~slG~il~~  195 (260)
T cd06606         125 RDIKGANILVDSDG----VVKLADFGCAKRLGDIETGEGTGSVRGTPYWMAPEVIRGEE-----YGRAADIWSLGCTVIE  195 (260)
T ss_pred             cCCCHHHEEEcCCC----CEEEcccccEEecccccccccccCCCCCccccCHhhhcCCC-----CCchhhHHHHHHHHHH
Confidence            99999999998765    69999999998765443       24555666666443222     2234677888887777


Q ss_pred             cccCC
Q 024842          258 LMFGR  262 (262)
Q Consensus       258 l~~G~  262 (262)
                      |++|+
T Consensus       196 l~~g~  200 (260)
T cd06606         196 MATGK  200 (260)
T ss_pred             HHhCC
Confidence            77764

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK

>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]

Probab=99.95  E-value=2e-28  Score=199.97  Aligned_cols=197  Identities=23%  Similarity=0.240  Sum_probs=159.6

Q ss_pred             eeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc---chHHHHHHHHHHH
Q 024842           21 VWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ---NNEQLEMVREEIR   97 (262)
Q Consensus        21 ~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~---~~~~~~~~~~E~~   97 (262)
                      ..+..+.|+.-+.||+|+||.|+-++...|++                      -||+|++...   .........+|..
T Consensus       180 qpvt~n~F~~~RvlGkGGFGEV~acqvraTGK----------------------MYAcKkL~KKRiKkr~ge~maLnEk~  237 (591)
T KOG0986|consen  180 QPVTKNTFRVYRVLGKGGFGEVCACQVRATGK----------------------MYACKKLDKKRIKKRKGETMALNEKQ  237 (591)
T ss_pred             hhccccceeeeEEEecccccceeEEEEecchh----------------------hHHHHHHHHHHHHHhhhhHHhhHHHH
Confidence            34557889999999999999999999998876                      6788776443   2222345678999


Q ss_pred             HhhhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHc
Q 024842           98 VSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHS  177 (262)
Q Consensus        98 ~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~  177 (262)
                      ++++++.+.||.+--.|          ++.+.+++||..|.||+|.-.+....+  ..|++..+..++.+|+.||++||+
T Consensus       238 iL~kV~s~FiVslaYAf----------eTkd~LClVLtlMNGGDLkfHiyn~g~--~gF~e~ra~FYAAEi~cGLehlH~  305 (591)
T KOG0986|consen  238 ILEKVSSPFIVSLAYAF----------ETKDALCLVLTLMNGGDLKFHIYNHGN--PGFDEQRARFYAAEIICGLEHLHR  305 (591)
T ss_pred             HHHHhccCcEEEEeeee----------cCCCceEEEEEeecCCceeEEeeccCC--CCCchHHHHHHHHHHHhhHHHHHh
Confidence            99999999999986665          668899999999999999776653332  359999999999999999999999


Q ss_pred             CCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccCc----cCcccCCcccchhhhhhhhhhhhhcCcccchhe
Q 024842          178 LEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKFA----LGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQI  253 (262)
Q Consensus       178 ~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~~----~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~  253 (262)
                      ..  ||+||+||+|||+++.+    .++|+|+|+|..+.....    .|+..|++||-+-.--     +....|.|++|+
T Consensus       306 ~~--iVYRDLKPeNILLDd~G----hvRISDLGLAvei~~g~~~~~rvGT~GYMAPEvl~ne~-----Y~~s~Dwf~lGC  374 (591)
T KOG0986|consen  306 RR--IVYRDLKPENILLDDHG----HVRISDLGLAVEIPEGKPIRGRVGTVGYMAPEVLQNEV-----YDFSPDWFSLGC  374 (591)
T ss_pred             cc--eeeccCChhheeeccCC----CeEeeccceEEecCCCCccccccCcccccCHHHHcCCc-----ccCCccHHHHHh
Confidence            88  99999999999999888    699999999999876542    5788888888663322     112358888888


Q ss_pred             eheecccCC
Q 024842          254 LMRELMFGR  262 (262)
Q Consensus       254 ~~~~l~~G~  262 (262)
                      ++|||+.|+
T Consensus       375 llYemi~G~  383 (591)
T KOG0986|consen  375 LLYEMIAGH  383 (591)
T ss_pred             HHHHHHccc
Confidence            888888885

>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

Probab=99.95  E-value=7.1e-28  Score=196.18  Aligned_cols=189  Identities=20%  Similarity=0.272  Sum_probs=146.4

Q ss_pred             CceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc-hHHHHHHHHHHHHhhhCCC
Q 024842           26 NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN-NEQLEMVREEIRVSSLFSH  104 (262)
Q Consensus        26 ~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~-~~~~~~~~~E~~~l~~l~h  104 (262)
                      +-|++.+.||.|+||.||+|.+..+++                      .+++|...... ....+.+.+|+.+++.++|
T Consensus         4 ~~~~~~~~ig~G~~~~vy~~~~~~~~~----------------------~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~h   61 (277)
T cd06641           4 ELFTKLEKIGKGSFGEVFKGIDNRTQK----------------------VVAIKIIDLEEAEDEIEDIQQEITVLSQCDS   61 (277)
T ss_pred             HhhhhheeEeecCCeEEEEEEECCCCc----------------------EEEEEEeccccchHHHHHHHHHHHHHHhcCC
Confidence            357889999999999999998866544                      67777654332 3344678899999999999


Q ss_pred             CCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeee
Q 024842          105 RNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAH  184 (262)
Q Consensus       105 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH  184 (262)
                      ||++++++.+          ......+++|||+.+++|.+++.     ...+++..+..++.|++.++.+||+.+  ++|
T Consensus        62 ~~iv~~~~~~----------~~~~~~~lv~e~~~~~~l~~~i~-----~~~~~~~~~~~~~~~l~~~l~~lh~~~--i~h  124 (277)
T cd06641          62 PYVTKYYGSY----------LKDTKLWIIMEYLGGGSALDLLE-----PGPLDETQIATILREILKGLDYLHSEK--KIH  124 (277)
T ss_pred             CCEeEEEEEE----------EeCCeEEEEEEeCCCCcHHHHHh-----cCCCCHHHHHHHHHHHHHHHHHHccCC--eec
Confidence            9999999987          33567899999999999998874     345899999999999999999999988  999


Q ss_pred             cCCCCCcEEEecCCCCCCceEEeeccceeeccccC-----ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecc
Q 024842          185 NDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELM  259 (262)
Q Consensus       185 ~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~  259 (262)
                      +||+|+||+++.++    .++|+|||++.......     ..++..|.+|+.+....     .-...|+|++|+++++|+
T Consensus       125 ~dl~p~Ni~i~~~~----~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~-----~~~~~Dv~slG~~l~~l~  195 (277)
T cd06641         125 RDIKAANVLLSEHG----EVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIKQSA-----YDSKADIWSLGITAIELA  195 (277)
T ss_pred             CCCCHHhEEECCCC----CEEEeecccceecccchhhhccccCCccccChhhhccCC-----CCchhhHHHHHHHHHHHH
Confidence            99999999998766    69999999987654322     13445566666442211     112357777777777777


Q ss_pred             cCC
Q 024842          260 FGR  262 (262)
Q Consensus       260 ~G~  262 (262)
                      +|+
T Consensus       196 ~g~  198 (277)
T cd06641         196 KGE  198 (277)
T ss_pred             cCC
Confidence            764

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int

>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

Probab=99.95  E-value=8.9e-28  Score=196.64  Aligned_cols=194  Identities=24%  Similarity=0.294  Sum_probs=146.3

Q ss_pred             ceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc----chHHHHHHHHHHHHhhhC
Q 024842           27 RYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ----NNEQLEMVREEIRVSSLF  102 (262)
Q Consensus        27 ~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~----~~~~~~~~~~E~~~l~~l  102 (262)
                      +|++.+.||+|++|.||++++.....                   ++..+++|.+...    .....+.+.+|+.+++.+
T Consensus         1 ~~~~~~~ig~G~~~~vy~~~~~~~~~-------------------~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~~   61 (288)
T cd05583           1 NFELLRVLGTGAYGKVFLVRKVGGHD-------------------AGKLYAMKVLKKATIVQKAKTAEHTRTERQVLEAV   61 (288)
T ss_pred             CceEEEEeccCCCceEEEEEEecccc-------------------CCcEEEEEEEehHHHHhhhhHHHHHHHHHHHHHhc
Confidence            48899999999999999998654322                   2346777766532    223345678899999999


Q ss_pred             -CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCC
Q 024842          103 -SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPP  181 (262)
Q Consensus       103 -~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~  181 (262)
                       +|||++++.+.+          ......+++|||+.+++|.+++.    ....+++..++.++.|++.+|.|||+.+  
T Consensus        62 ~~~~~i~~~~~~~----------~~~~~~~lv~e~~~~~~L~~~~~----~~~~~~~~~~~~~~~ql~~~l~~lH~~~--  125 (288)
T cd05583          62 RRCPFLVTLHYAF----------QTDTKLHLILDYVNGGELFTHLY----QREHFTESEVRVYIAEIVLALDHLHQLG--  125 (288)
T ss_pred             cCCcchhhhheee----------ecCCEEEEEEecCCCCcHHHHHh----hcCCcCHHHHHHHHHHHHHHHHHHHHCC--
Confidence             599999999877          33567899999999999988875    3455899999999999999999999988  


Q ss_pred             eeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC------ccCcccCCcccchhhhhhhhhhhhhcCcccchheeh
Q 024842          182 YAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF------ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILM  255 (262)
Q Consensus       182 ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~------~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~  255 (262)
                      ++|+||+|+||+++.++    .++|+|||++.......      ..++..|.+||.+.....   ......|+|++|+++
T Consensus       126 ~~H~dl~p~nil~~~~~----~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~---~~~~~~Dv~slG~il  198 (288)
T cd05583         126 IIYRDIKLENILLDSEG----HVVLTDFGLSKEFLAEEEERAYSFCGTIEYMAPEVIRGGSG---GHDKAVDWWSLGVLT  198 (288)
T ss_pred             eeccCCCHHHeEECCCC----CEEEEECccccccccccccccccccCCccccCHHHhcCCCC---CCcchhhhHHHHHHH
Confidence            99999999999998766    69999999987643322      124555666664422110   011246788888888


Q ss_pred             eecccCC
Q 024842          256 RELMFGR  262 (262)
Q Consensus       256 ~~l~~G~  262 (262)
                      ++|++|+
T Consensus       199 ~el~tg~  205 (288)
T cd05583         199 FELLTGA  205 (288)
T ss_pred             HHHHhCC
Confidence            8887774

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines

>cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

Probab=99.95  E-value=1.6e-27  Score=192.08  Aligned_cols=183  Identities=17%  Similarity=0.229  Sum_probs=134.1

Q ss_pred             EeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc-hHHHHHHHHHHHHhhhCCCCCccchh
Q 024842           33 QLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN-NEQLEMVREEIRVSSLFSHRNLLPLL  111 (262)
Q Consensus        33 ~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~~  111 (262)
                      .||+|+||.||+|.+...+.                    +..+++|...... ....+.+.+|+.+++.++||||++++
T Consensus         2 ~ig~G~~g~v~~~~~~~~~~--------------------~~~vavk~~~~~~~~~~~~~~~~E~~~l~~l~h~~ii~~~   61 (257)
T cd05115           2 ELGSGNFGCVKKGVYKMRKK--------------------QIDVAIKVLKNENEKSVRDEMMREAEIMHQLDNPYIVRMI   61 (257)
T ss_pred             ccCCCCcccEEEEEEecCCC--------------------ceeEEEEEcccccChHHHHHHHHHHHHHHhcCCCCeEEEE
Confidence            48999999999998753321                    2257777766543 33456788999999999999999999


Q ss_pred             hhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeeecCCCCCc
Q 024842          112 DHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGN  191 (262)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~dikp~N  191 (262)
                      +.+.           ....+++|||+.+++|.+++..   ....+++..++.++.|++.||.|||+++  ++|+||||+|
T Consensus        62 ~~~~-----------~~~~~lv~e~~~~~~L~~~l~~---~~~~~~~~~~~~~~~~i~~~l~~lH~~~--i~H~dlkp~n  125 (257)
T cd05115          62 GVCE-----------AEALMLVMEMASGGPLNKFLSG---KKDEITVSNVVELMHQVSMGMKYLEGKN--FVHRDLAARN  125 (257)
T ss_pred             EEEc-----------CCCeEEEEEeCCCCCHHHHHHh---CCCCCCHHHHHHHHHHHHHHHHHHHhcC--eeecccchhe
Confidence            8752           3457999999999999988752   3456899999999999999999999988  9999999999


Q ss_pred             EEEecCCCCCCceEEeeccceeeccccCc--------cCcccCCcccchhhhhhhhhhhhhcCcccchheeheeccc
Q 024842          192 ILITCRKGQPPLAILMDFGSARPAQSKFA--------LGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMF  260 (262)
Q Consensus       192 ill~~~~~~~~~~kl~Dfg~a~~~~~~~~--------~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~  260 (262)
                      |+++.++    .++|+|||++........        ..+..|.+||.+..-     ......|+|++|+++|++++
T Consensus       126 il~~~~~----~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-----~~~~~~Di~slG~~l~el~~  193 (257)
T cd05115         126 VLLVNQH----YAKISDFGLSKALGADDSYYKARSAGKWPLKWYAPECINFR-----KFSSRSDVWSYGITMWEAFS  193 (257)
T ss_pred             EEEcCCC----cEEeccCCccccccCCccceeccCCCCCCcccCCHHHHccC-----CCCchhhHHHHHHHHHHHhc
Confidence            9998766    699999999875432211        112345555532110     11123566666666666553

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho

>cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

Probab=99.95  E-value=1.9e-27  Score=194.05  Aligned_cols=190  Identities=29%  Similarity=0.422  Sum_probs=144.0

Q ss_pred             eEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccch-HHHHHHHHHHHHhhhCC-CC
Q 024842           28 YRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNN-EQLEMVREEIRVSSLFS-HR  105 (262)
Q Consensus        28 y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~-~~~~~~~~E~~~l~~l~-h~  105 (262)
                      |++.+.||+|++|.||+|.+..+++                      .+++|++..... .......+|+..++.++ |+
T Consensus         1 y~~~~~ig~g~~g~v~~~~~~~~~~----------------------~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~h~   58 (283)
T cd07830           1 YKVIKQLGDGTFGSVYLARNKETGE----------------------LVAIKKMKKKFYSWEECMNLREVKSLRKLNEHP   58 (283)
T ss_pred             CeeheeeccCCceEEEEEEECCCCc----------------------EEEEEEehhhccchhHHHHHHHHHHHHhccCCC
Confidence            6788999999999999999876544                      577776654322 12233456888999998 99


Q ss_pred             CccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeeec
Q 024842          106 NLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHN  185 (262)
Q Consensus       106 ~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~  185 (262)
                      |++++++.+.          ..+..+++||++ +++|.+.+....  ...+++..++.++.|++.+|.|||+++  ++|+
T Consensus        59 ~i~~~~~~~~----------~~~~~~lv~e~~-~~~l~~~~~~~~--~~~~~~~~~~~~~~~l~~~l~~Lh~~~--i~H~  123 (283)
T cd07830          59 NIVKLKEVFR----------ENDELYFVFEYM-EGNLYQLMKDRK--GKPFSESVIRSIIYQILQGLAHIHKHG--FFHR  123 (283)
T ss_pred             CchhHHHHhh----------cCCcEEEEEecC-CCCHHHHHHhcc--cccCCHHHHHHHHHHHHHHHHHHHHCC--cccC
Confidence            9999999884          266789999999 788888775321  235899999999999999999999998  9999


Q ss_pred             CCCCCcEEEecCCCCCCceEEeeccceeeccccC----ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecccC
Q 024842          186 DVKPGNILITCRKGQPPLAILMDFGSARPAQSKF----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMFG  261 (262)
Q Consensus       186 dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~G  261 (262)
                      ||+|+||+++.++    .++|+|||++.......    ..++..|.+||.+....    ......|+|++|+++++|++|
T Consensus       124 dl~~~ni~i~~~~----~~~l~d~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~----~~~~~~Di~s~G~~l~el~~g  195 (283)
T cd07830         124 DLKPENLLVSGPE----VVKIADFGLAREIRSRPPYTDYVSTRWYRAPEILLRST----SYSSPVDIWALGCIMAELYTL  195 (283)
T ss_pred             CCChhhEEEcCCC----CEEEeecccceeccCCCCcCCCCCcccccCceeeecCc----CcCCccchhhHHHHHHHHHhC
Confidence            9999999998766    69999999998765422    23455566666543211    111246788888888887776


Q ss_pred             C
Q 024842          262 R  262 (262)
Q Consensus       262 ~  262 (262)
                      +
T Consensus       196 ~  196 (283)
T cd07830         196 R  196 (283)
T ss_pred             C
Confidence            4

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili

>smart00219 TyrKc Tyrosine kinase, catalytic domain

Probab=99.95  E-value=7.2e-28  Score=193.71  Aligned_cols=192  Identities=23%  Similarity=0.279  Sum_probs=144.8

Q ss_pred             eEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchH-HHHHHHHHHHHhhhCCCCC
Q 024842           28 YRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNE-QLEMVREEIRVSSLFSHRN  106 (262)
Q Consensus        28 y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~-~~~~~~~E~~~l~~l~h~~  106 (262)
                      +.+.+.||+|+||.||++.+...+..                  ....+++|........ ..+.+..|+..++.++|+|
T Consensus         1 ~~~~~~lg~g~~g~v~~~~~~~~~~~------------------~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~~~~   62 (258)
T smart00219        1 LTLGKKLGEGAFGEVYKGTLKGLSGE------------------KEVEVAVKTLKEDADEQQIEEFLREARIMRKLDHPN   62 (258)
T ss_pred             CcccceeccCCCcceEEEEecCCCCC------------------CCceEEEEEccCCCChHHHHHHHHHHHHHHhcCCCc
Confidence            35678999999999999998764310                  1346888887655433 5678889999999999999


Q ss_pred             ccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeeecC
Q 024842          107 LLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHND  186 (262)
Q Consensus       107 i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~d  186 (262)
                      ++++++.+.          .....+++|+++.+++|.+++.....  ..+++..++.++.|++.||.+||+.+  ++|+|
T Consensus        63 i~~~~~~~~----------~~~~~~~i~e~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~ql~~~l~~lh~~~--~~h~d  128 (258)
T smart00219       63 IVKLLGVCT----------EEEPLMIVMEYMEGGDLLDYLRKNRP--KELSLSDLLSFALQIARGMEYLESKN--FIHRD  128 (258)
T ss_pred             hheEEEEEc----------CCCeeEEEEeccCCCCHHHHHHhhhh--ccCCHHHHHHHHHHHHHHHHHHhcCC--eeecc
Confidence            999999873          34679999999999999998863221  11899999999999999999999998  99999


Q ss_pred             CCCCcEEEecCCCCCCceEEeeccceeeccccCc------cCcccCCcccchhhhhhhhhhhhhcCcccchheeheeccc
Q 024842          187 VKPGNILITCRKGQPPLAILMDFGSARPAQSKFA------LGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMF  260 (262)
Q Consensus       187 ikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~~------~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~  260 (262)
                      |+|+||+++.++    .++|+|||++........      .++..|.+||......     .-..+|+|++|+++++|++
T Consensus       129 l~~~nil~~~~~----~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~~~-----~~~~~Di~slG~i~~~l~~  199 (258)
T smart00219      129 LAARNCLVGENL----VVKISDFGLSRDLYDDDYYKKKGGKLPIRWMAPESLKDGK-----FTSKSDVWSFGVLLWEIFT  199 (258)
T ss_pred             cccceEEEccCC----eEEEcccCCceecccccccccccCCCcccccChHHhccCC-----CCcchhHHHHHHHHHHHHh
Confidence            999999998776    799999999986654311      1234566665431111     1123566777766666665

Phosphotransferases. Tyrosine-specific kinase subfamily.

>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

Probab=99.95  E-value=8.3e-28  Score=194.10  Aligned_cols=182  Identities=25%  Similarity=0.308  Sum_probs=143.0

Q ss_pred             eecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc---chHHHHHHHHHHHHhhhCCCCCccch
Q 024842           34 LGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ---NNEQLEMVREEIRVSSLFSHRNLLPL  110 (262)
Q Consensus        34 ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~---~~~~~~~~~~E~~~l~~l~h~~i~~~  110 (262)
                      ||.|++|.||+|++..+++                      .+++|.+...   .....+.+.+|+.+++.++||||+++
T Consensus         1 lg~g~~~~v~~~~~~~~~~----------------------~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~   58 (262)
T cd05572           1 LGVGGFGRVELVKVKSKNR----------------------TFALKCVKKRHIVETGQQEHIFSEKEILEECNHPFIVKL   58 (262)
T ss_pred             CCCCCceEEEEEEECCCCc----------------------EEEEEEEehhcchhhhHHHHHHHHHHHHHhCCCCCEeee
Confidence            6899999999999876544                      5777766433   22345678899999999999999999


Q ss_pred             hhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeeecCCCCC
Q 024842          111 LDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPG  190 (262)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~dikp~  190 (262)
                      ++.+          ......++++||..+++|.+++.    +...+++..+..++.|++.||.|||+++  ++|+||+|+
T Consensus        59 ~~~~----------~~~~~~~lv~e~~~~~~L~~~l~----~~~~l~~~~~~~~~~~i~~~l~~lH~~~--~~h~dl~~~  122 (262)
T cd05572          59 YRTF----------KDKKYIYMLMEYCLGGELWTILR----DRGLFDEYTARFYIACVVLAFEYLHNRG--IIYRDLKPE  122 (262)
T ss_pred             eeeE----------EcCCccEEEEecCCCCcHHHHHh----hcCCCCHHHHHHHHHHHHHHHHHHhhCC--cccCCCCHH
Confidence            9876          33567899999999999999886    3445899999999999999999999988  999999999


Q ss_pred             cEEEecCCCCCCceEEeeccceeecccc----CccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecccCC
Q 024842          191 NILITCRKGQPPLAILMDFGSARPAQSK----FALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMFGR  262 (262)
Q Consensus       191 Nill~~~~~~~~~~kl~Dfg~a~~~~~~----~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~G~  262 (262)
                      ||+++.++    .++|+|||++......    ...++..|.+||.+...+     .....|+|++|+++|+|++|+
T Consensus       123 nilv~~~~----~~~l~df~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~-----~~~~~Di~slG~il~~l~~g~  189 (262)
T cd05572         123 NLLLDSNG----YVKLVDFGFAKKLKSGQKTWTFCGTPEYVAPEIILNKG-----YDFSVDYWSLGILLYELLTGR  189 (262)
T ss_pred             HEEEcCCC----CEEEeeCCcccccCcccccccccCCcCccChhHhcCCC-----CCChhhhhhhHHHHHHHHhCC
Confidence            99998776    6999999999876543    123455677776543221     122367888888888877764

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi

>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

Probab=99.95  E-value=1.6e-27  Score=199.85  Aligned_cols=201  Identities=26%  Similarity=0.357  Sum_probs=149.8

Q ss_pred             ceeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc--chHHHHHHHHHHH
Q 024842           20 DVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ--NNEQLEMVREEIR   97 (262)
Q Consensus        20 ~~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~--~~~~~~~~~~E~~   97 (262)
                      ..|-..++|++.+.||+|++|.||+|++..+++                      .+++|++...  .....+.+.+|+.
T Consensus         9 ~~~~~~~~y~~~~~ig~g~~g~vy~~~~~~~~~----------------------~~aiK~~~~~~~~~~~~~~~~~E~~   66 (343)
T cd07851           9 TVWEVPDRYQNLSPVGSGAYGQVCSAFDTKTGR----------------------KVAIKKLSRPFQSAIHAKRTYRELR   66 (343)
T ss_pred             ceecccCceEEEEEeccCCceEEEEEEECCCCc----------------------EEEEEecccccchhhHHHHHHHHHH
Confidence            455567899999999999999999999877654                      5777766532  2334466778999


Q ss_pred             HhhhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHc
Q 024842           98 VSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHS  177 (262)
Q Consensus        98 ~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~  177 (262)
                      +++.++|||++++.+.+....    ........+++++++ +++|.+++.     ...+++..++.++.|++.||.|||+
T Consensus        67 ~l~~l~h~~iv~~~~~~~~~~----~~~~~~~~~lv~e~~-~~~L~~~~~-----~~~l~~~~~~~~~~ql~~aL~~LH~  136 (343)
T cd07851          67 LLKHMDHENVIGLLDVFTPAS----SLEDFQDVYLVTHLM-GADLNNIVK-----CQKLSDDHIQFLVYQILRGLKYIHS  136 (343)
T ss_pred             HHHhccCCCHHHHHHHhhccc----cccccccEEEEEecC-CCCHHHHHh-----cCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999998774200    001223478999976 668888774     2459999999999999999999999


Q ss_pred             CCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC--ccCcccCCcccchhhhhhhhhhhhhcCcccchheeh
Q 024842          178 LEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF--ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILM  255 (262)
Q Consensus       178 ~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~--~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~  255 (262)
                      .+  ++|+||+|+||+++.++    .++|+|||++.......  ..++..|.+|+-+....    ......|+|++|+++
T Consensus       137 ~g--i~H~dlkp~Nill~~~~----~~kL~dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~----~~~~~~DvwslGv~l  206 (343)
T cd07851         137 AG--IIHRDLKPSNIAVNEDC----ELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWM----HYNQTVDIWSVGCIM  206 (343)
T ss_pred             CC--eecCCCCHHHeEECCCC----CEEEccccccccccccccCCcccccccCHHHHhCCC----CCCchHhHHHHHHHH
Confidence            98  99999999999998766    69999999998754331  23445566665442110    111236888888888


Q ss_pred             eecccCC
Q 024842          256 RELMFGR  262 (262)
Q Consensus       256 ~~l~~G~  262 (262)
                      ++|++|+
T Consensus       207 ~elltg~  213 (343)
T cd07851         207 AELLTGK  213 (343)
T ss_pred             HHHHhCC
Confidence            8888775

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK

>cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

Probab=99.95  E-value=2.6e-27  Score=190.96  Aligned_cols=195  Identities=20%  Similarity=0.270  Sum_probs=143.7

Q ss_pred             ceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc--chHHHHHHHHHHHHhhhCCC
Q 024842           27 RYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ--NNEQLEMVREEIRVSSLFSH  104 (262)
Q Consensus        27 ~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~--~~~~~~~~~~E~~~l~~l~h  104 (262)
                      +|.+.+.||+|+||.||++.+.......+                   ..++|.....  ......++..|+.+++.++|
T Consensus         1 ~y~i~~~ig~g~~g~v~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h   61 (260)
T cd08222           1 RYILQQRLGKGSFGTVYLVKDKKAVAEER-------------------LKVLKEIPVGELNPNETVQANQEAQLLSKLDH   61 (260)
T ss_pred             CceeeeeecCCCCceEEEEEecCCCCcce-------------------EEEeccccccccCcchHHHHHHHHHHHHhCCC
Confidence            58999999999999999999876543211                   2233333221  22223456678899999999


Q ss_pred             CCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeee
Q 024842          105 RNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAH  184 (262)
Q Consensus       105 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH  184 (262)
                      ||++++++.+.          .....++++||+.+++|.+++.........+++..++.++.|++.||.|||+.+  ++|
T Consensus        62 ~~i~~~~~~~~----------~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~--i~h  129 (260)
T cd08222          62 PAIVKFHASFL----------ERDAFCIITEYCEGRDLDCKLEELKHTGKTLSENQVCEWFIQLLLGVHYMHQRR--ILH  129 (260)
T ss_pred             CcHHHHHHHHh----------cCCceEEEEEeCCCCCHHHHHHHHhhcccccCHHHHHHHHHHHHHHHHHHHHcC--ccc
Confidence            99999999873          355689999999999999888654445567999999999999999999999988  999


Q ss_pred             cCCCCCcEEEecCCCCCCceEEeeccceeeccccC-----ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecc
Q 024842          185 NDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELM  259 (262)
Q Consensus       185 ~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~  259 (262)
                      +||+|+||+++.+     .++|+|||.+.......     ..++..|.+||.....+.     -...|+|++|+++++|+
T Consensus       130 ~~l~~~nili~~~-----~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~-----~~~~Dv~slG~~~~~l~  199 (260)
T cd08222         130 RDLKAKNIFLKNN-----LLKIGDFGVSRLLMGSCDLATTFTGTPYYMSPEALKHQGY-----DSKSDIWSLGCILYEMC  199 (260)
T ss_pred             cCCChhheEeecC-----CEeecccCceeecCCCcccccCCCCCcCccCHHHHccCCC-----CchhhHHHHHHHHHHHH
Confidence            9999999999743     49999999987654322     234555666664322111     12357777777777777


Q ss_pred             cCC
Q 024842          260 FGR  262 (262)
Q Consensus       260 ~G~  262 (262)
                      +|+
T Consensus       200 ~~~  202 (260)
T cd08222         200 CLA  202 (260)
T ss_pred             hCC
Confidence            663

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check

>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

Probab=99.95  E-value=3.5e-28  Score=203.40  Aligned_cols=192  Identities=25%  Similarity=0.366  Sum_probs=146.2

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc--chHHHHHHHHHHHHhhhC
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ--NNEQLEMVREEIRVSSLF  102 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~--~~~~~~~~~~E~~~l~~l  102 (262)
                      .++|++.+.||+|+||.||+|.+..+++                      .+++|++...  .......+.+|+.+++.+
T Consensus         6 ~~~y~~~~~lg~g~~~~v~~~~~~~~~~----------------------~~~vK~~~~~~~~~~~~~~~~~E~~~l~~l   63 (337)
T cd07852           6 LRKYEILQKLGKGAYGIVWKAIDRRTKE----------------------VVALKKIFDAFRNATDAQRTFREIMFLQEL   63 (337)
T ss_pred             hhHHHHhHhhcCCCCeeEEEEEEcCCCe----------------------EEEEEeeccccCcchhhhhhhHHHHHHHHh
Confidence            4689999999999999999999876554                      5666655332  223345677899999999


Q ss_pred             -CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCC
Q 024842          103 -SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPP  181 (262)
Q Consensus       103 -~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~  181 (262)
                       +||||+++++++..        ......+++||++. ++|.+++.    .. .+++..++.++.|++.||.|||+.+  
T Consensus        64 ~~h~ni~~~~~~~~~--------~~~~~~~lv~e~~~-~~L~~~~~----~~-~~~~~~~~~i~~qi~~~L~~LH~~~--  127 (337)
T cd07852          64 GDHPNIVKLLNVIKA--------ENDKDIYLVFEYME-TDLHAVIR----AN-ILEDVHKRYIMYQLLKALKYIHSGN--  127 (337)
T ss_pred             cCCCCccceeeeecc--------CCCceEEEEecccc-cCHHHHHh----cC-CCCHHHHHHHHHHHHHHHHHHHHCC--
Confidence             99999999987631        23446899999987 58877764    22 6889999999999999999999988  


Q ss_pred             eeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC----------ccCcccCCcccchhhhhhhhhhhhhcCcccch
Q 024842          182 YAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF----------ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVI  251 (262)
Q Consensus       182 ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~----------~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~  251 (262)
                      ++|+||+|+||+++.++    .++|+|||++.......          ..++..|.+||.+..-.    ......|+|++
T Consensus       128 i~H~dl~p~nill~~~~----~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~----~~~~~sDi~sl  199 (337)
T cd07852         128 VIHRDLKPSNILLNSDC----RVKLADFGLARSLSELEENPENPVLTDYVATRWYRAPEILLGST----RYTKGVDMWSV  199 (337)
T ss_pred             eecCCCCHHHEEEcCCC----cEEEeeccchhccccccccccCcchhcccccccccCceeeeccc----cccccchHHHH
Confidence            99999999999998777    69999999988654321          12445567776542211    11234788888


Q ss_pred             heeheecccCC
Q 024842          252 QILMRELMFGR  262 (262)
Q Consensus       252 g~~~~~l~~G~  262 (262)
                      |+++|+|++|+
T Consensus       200 G~~l~el~tg~  210 (337)
T cd07852         200 GCILGEMLLGK  210 (337)
T ss_pred             HHHHHHHHhCC
Confidence            88888888875

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul

>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

Probab=99.95  E-value=1.2e-27  Score=192.39  Aligned_cols=192  Identities=23%  Similarity=0.385  Sum_probs=146.9

Q ss_pred             ceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc--chHHHHHHHHHHHHhhhCCC
Q 024842           27 RYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ--NNEQLEMVREEIRVSSLFSH  104 (262)
Q Consensus        27 ~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~--~~~~~~~~~~E~~~l~~l~h  104 (262)
                      +|++.+.||+|+||.||++.+..+++                      .+++|.+...  .....+.+.+|+.+++.++|
T Consensus         1 ~~~~~~~l~~g~~~~v~~~~~~~~~~----------------------~~~ik~~~~~~~~~~~~~~~~~E~~~l~~~~h   58 (257)
T cd08225           1 RYEIIKKIGEGSFGKIYLAKAKSDSE----------------------HCVIKEIDLTKMPVKEKEASKKEVILLAKMKH   58 (257)
T ss_pred             CceEEEEecCCCcceEEEEEEcCCCc----------------------eEEEEEeeHhhccchhhHHHHHHHHHHHhCCC
Confidence            58999999999999999999877654                      5677765443  12334567889999999999


Q ss_pred             CCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeee
Q 024842          105 RNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAH  184 (262)
Q Consensus       105 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH  184 (262)
                      +|++++++.+          ......++++||+.+++|.+++...  ....+++..++.++.|++.||.|||+.+  ++|
T Consensus        59 ~~i~~~~~~~----------~~~~~~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~~~~~l~~~l~~lh~~~--i~H  124 (257)
T cd08225          59 PNIVTFFASF----------QENGRLFIVMEYCDGGDLMKRINRQ--RGVLFSEDQILSWFVQISLGLKHIHDRK--ILH  124 (257)
T ss_pred             CChhhhhhee----------ccCCeEEEEEecCCCCcHHHHHHhc--cCCCCCHHHHHHHHHHHHHHHHHHHHCC--ccc
Confidence            9999999887          3366799999999999999987532  2235799999999999999999999998  999


Q ss_pred             cCCCCCcEEEecCCCCCCceEEeeccceeeccccC-----ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecc
Q 024842          185 NDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELM  259 (262)
Q Consensus       185 ~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~  259 (262)
                      +||+|+||+++.++.   .++|+|||.+.......     ..++..|.+||......     .....|+|++|+++++|+
T Consensus       125 ~dl~~~nil~~~~~~---~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~ape~~~~~~-----~~~~~Dv~slG~il~~l~  196 (257)
T cd08225         125 RDIKSQNIFLSKNGM---VAKLGDFGIARQLNDSMELAYTCVGTPYYLSPEICQNRP-----YNNKTDIWSLGCVLYELC  196 (257)
T ss_pred             ccCCHHHEEEcCCCC---eEEecccccchhccCCcccccccCCCccccCHHHHcCCC-----CCchhhHHHHHHHHHHHH
Confidence            999999999986642   57999999987654332     23455566666432211     112467888888888777


Q ss_pred             cCC
Q 024842          260 FGR  262 (262)
Q Consensus       260 ~G~  262 (262)
                      +|+
T Consensus       197 ~g~  199 (257)
T cd08225         197 TLK  199 (257)
T ss_pred             hCC
Confidence            763

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.

>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

Probab=99.95  E-value=4.9e-28  Score=199.41  Aligned_cols=202  Identities=25%  Similarity=0.282  Sum_probs=145.4

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc--hHHHHHHHHHHHHhhhC
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN--NEQLEMVREEIRVSSLF  102 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~--~~~~~~~~~E~~~l~~l  102 (262)
                      .++|++.+.||+|++|.||+|.+..+++                      .+++|.+....  ......+.+|+.+++.+
T Consensus         6 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~----------------------~v~iK~~~~~~~~~~~~~~~~~e~~~~~~l   63 (302)
T cd07864           6 VDKFDIIGQIGEGTYGQVYKARDKDTGE----------------------LVALKKVRLDNEKEGFPITAIREIKILRQL   63 (302)
T ss_pred             hhhhheeeeecccCCEEEEEEEECCCCc----------------------EEEEEEEeecccccCchHHHHHHHHHHHhC
Confidence            5689999999999999999999976654                      56666654332  22234567899999999


Q ss_pred             CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCe
Q 024842          103 SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPY  182 (262)
Q Consensus       103 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~i  182 (262)
                      +|||++++++.+................++++|++.+ ++.+.+..   ....+++..++.++.|++.||.|||+.+  +
T Consensus        64 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~l~~---~~~~~~~~~~~~i~~qi~~aL~~LH~~~--i  137 (302)
T cd07864          64 NHRNIVNLKEIVTDKQDALDFKKDKGAFYLVFEYMDH-DLMGLLES---GLVHFSEDHIKSFMKQLLEGLNYCHKKN--F  137 (302)
T ss_pred             CCCCeeeeeheecCcchhhhccccCCcEEEEEcccCc-cHHHHHhc---CCCCCCHHHHHHHHHHHHHHHHHHHhCC--e
Confidence            9999999998874311111111223478999999875 66665542   2345899999999999999999999998  9


Q ss_pred             eecCCCCCcEEEecCCCCCCceEEeeccceeeccccC------ccCcccCCcccchhhhhhhhhhhhhcCcccchheehe
Q 024842          183 AHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF------ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMR  256 (262)
Q Consensus       183 vH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~------~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~  256 (262)
                      +|+||+|+||+++.++    .+||+|||++.......      ...+..|.+||.+-+-..    .....|+|++|++++
T Consensus       138 ~H~dl~p~nili~~~~----~~kl~dfg~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~----~~~~~Di~slG~~~~  209 (302)
T cd07864         138 LHRDIKCSNILLNNKG----QIKLADFGLARLYNSEESRPYTNKVITLWYRPPELLLGEER----YGPAIDVWSCGCILG  209 (302)
T ss_pred             ecCCCCHHHEEECCCC----cEEeCcccccccccCCcccccccceeccCccChHHhcCCCC----CCchhHHHHHHHHHH
Confidence            9999999999998766    69999999998654322      123445666664421110    112367888888888


Q ss_pred             ecccCC
Q 024842          257 ELMFGR  262 (262)
Q Consensus       257 ~l~~G~  262 (262)
                      +|++|+
T Consensus       210 el~~g~  215 (302)
T cd07864         210 ELFTKK  215 (302)
T ss_pred             HHHhCC
Confidence            877774

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely

>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]

Probab=99.95  E-value=6e-29  Score=205.58  Aligned_cols=191  Identities=23%  Similarity=0.261  Sum_probs=161.9

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhc---cchHHHHHHHHHHHHhhh
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLI---QNNEQLEMVREEIRVSSL  101 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~---~~~~~~~~~~~E~~~l~~  101 (262)
                      -.+++.+..||-|+||.|-++.......                      .+|+|.++.   -+....++...|-+++..
T Consensus       419 l~dl~~iaTLGvGgFGRVELV~~~~~~~----------------------~fAlKilkK~hIVdtkQqeHv~sEr~Im~~  476 (732)
T KOG0614|consen  419 LSDLKRIATLGVGGFGRVELVKVNSQKA----------------------TFALKILKKKHIVDTKQQEHVFSERNIMME  476 (732)
T ss_pred             hhhhhhhhhcccCccceEEEEEecccch----------------------HHHHHHHhHhhccchhHHHHHHhHHHHHHh
Confidence            4678889999999999999988665433                      356655543   355556788899999999


Q ss_pred             CCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCC
Q 024842          102 FSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPP  181 (262)
Q Consensus       102 l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~  181 (262)
                      ...|.|++++..|          .+....|+.||-|-||.|...+.    .++.|.+.+...++..++.|++|||+.+  
T Consensus       477 ~~s~fIvrLYrTf----------rd~kyvYmLmEaClGGElWTiLr----dRg~Fdd~tarF~~acv~EAfeYLH~k~--  540 (732)
T KOG0614|consen  477 CRSDFIVRLYRTF----------RDSKYVYMLMEACLGGELWTILR----DRGSFDDYTARFYVACVLEAFEYLHRKG--  540 (732)
T ss_pred             cCchHHHHHHHHh----------ccchhhhhhHHhhcCchhhhhhh----hcCCcccchhhhhHHHHHHHHHHHHhcC--
Confidence            9999999999998          44677889999999999999887    6677999999999999999999999999  


Q ss_pred             eeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC----ccCcccCCcccchhhhhhhhhhhhhcCcccchheehee
Q 024842          182 YAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRE  257 (262)
Q Consensus       182 ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~  257 (262)
                      |++|||||+|++++.++    .+||.|||+|+.+.+..    -.|++.|.+||-+..-|....     -|.|++|+++||
T Consensus       541 iIYRDLKPENllLd~~G----y~KLVDFGFAKki~~g~KTwTFcGTpEYVAPEIILnKGHD~a-----vDyWaLGIli~E  611 (732)
T KOG0614|consen  541 IIYRDLKPENLLLDNRG----YLKLVDFGFAKKIGSGRKTWTFCGTPEYVAPEIILNKGHDRA-----VDYWALGILIYE  611 (732)
T ss_pred             ceeccCChhheeeccCC----ceEEeehhhHHHhccCCceeeecCCcccccchhhhccCcchh-----hHHHHHHHHHHH
Confidence            99999999999999888    79999999999987665    369999999998877776644     378999999999


Q ss_pred             cccCC
Q 024842          258 LMFGR  262 (262)
Q Consensus       258 l~~G~  262 (262)
                      |++|+
T Consensus       612 LL~G~  616 (732)
T KOG0614|consen  612 LLTGS  616 (732)
T ss_pred             HHcCC
Confidence            98885

>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

Probab=99.95  E-value=7.5e-28  Score=198.92  Aligned_cols=200  Identities=25%  Similarity=0.302  Sum_probs=144.6

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc--hHHHHHHHHHHHHhhhC
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN--NEQLEMVREEIRVSSLF  102 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~--~~~~~~~~~E~~~l~~l  102 (262)
                      .++|++.+.||+|+||.||+|.+..+++                      .+++|.+....  ......+.+|+.+++.+
T Consensus        11 ~~~y~~~~~lg~g~~~~v~~~~~~~~~~----------------------~~aik~~~~~~~~~~~~~~~~~e~~~l~~l   68 (310)
T cd07865          11 VSKYEKLAKIGQGTFGEVFKARHKKTKQ----------------------IVALKKVLMENEKEGFPITALREIKILQLL   68 (310)
T ss_pred             hhheEEEEEeecCCCEEEEEEEECCCCc----------------------EEEEEEEeccCCcCCchhHHHHHHHHHHhC
Confidence            4689999999999999999999887655                      56666554321  22234456799999999


Q ss_pred             CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCe
Q 024842          103 SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPY  182 (262)
Q Consensus       103 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~i  182 (262)
                      +||||+++++.+.....  .........+++|||+. ++|.+.+.   .....+++.+++.++.|++.||.|||+.+  +
T Consensus        69 ~h~~iv~~~~~~~~~~~--~~~~~~~~~~lv~e~~~-~~l~~~l~---~~~~~~~~~~~~~i~~qi~~al~~lH~~~--i  140 (310)
T cd07865          69 KHENVVNLIEICRTKAT--PYNRYKGSFYLVFEFCE-HDLAGLLS---NKNVKFTLSEIKKVMKMLLNGLYYIHRNK--I  140 (310)
T ss_pred             CCCCccceEEEEecccc--cccCCCceEEEEEcCCC-cCHHHHHH---hcccCCCHHHHHHHHHHHHHHHHHHHHCC--e
Confidence            99999999987642110  01123456799999876 46766654   23346899999999999999999999998  9


Q ss_pred             eecCCCCCcEEEecCCCCCCceEEeeccceeeccccCc---------cCcccCCcccchhhhhhhhhhhhhcCcccchhe
Q 024842          183 AHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKFA---------LGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQI  253 (262)
Q Consensus       183 vH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~~---------~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~  253 (262)
                      +|+||||+||+++.++    .++|+|||++........         .++..|.+||.+....    ......|+|++|+
T Consensus       141 ~H~dl~p~nil~~~~~----~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~----~~~~~~Di~slG~  212 (310)
T cd07865         141 LHRDMKAANILITKDG----ILKLADFGLARAFSLSKNSKPNRYTNRVVTLWYRPPELLLGER----DYGPPIDMWGAGC  212 (310)
T ss_pred             eccCCCHHHEEECCCC----cEEECcCCCcccccCCcccCCCCccCcccCccccCcHHhcCCc----ccCchhhhHHHHH
Confidence            9999999999998766    699999999976543221         2334566666442110    0112468888888


Q ss_pred             eheecccCC
Q 024842          254 LMRELMFGR  262 (262)
Q Consensus       254 ~~~~l~~G~  262 (262)
                      ++++|++|+
T Consensus       213 ~l~el~t~~  221 (310)
T cd07865         213 IMAEMWTRS  221 (310)
T ss_pred             HHHHHHhCC
Confidence            888887764

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl

>cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

Probab=99.95  E-value=8.7e-28  Score=196.26  Aligned_cols=191  Identities=25%  Similarity=0.316  Sum_probs=145.7

Q ss_pred             eEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc--chHHHHHHHHHHHHhhhCCCC
Q 024842           28 YRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ--NNEQLEMVREEIRVSSLFSHR  105 (262)
Q Consensus        28 y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~--~~~~~~~~~~E~~~l~~l~h~  105 (262)
                      |++.+.||.|++|.||+|.+..+++                      .+++|++...  .......+.+|+.+++.++|+
T Consensus         1 y~~~~~l~~g~~~~vy~~~~~~~~~----------------------~~~~K~~~~~~~~~~~~~~~~~e~~~l~~l~~~   58 (287)
T cd07840           1 YEKIAQIGEGTYGQVYKARNKKTGE----------------------LVALKKIRMENEKEGFPITAIREIKLLQKLRHP   58 (287)
T ss_pred             CeeeEEeccCCCeEEEEEEECCCCe----------------------EEEEEEEecccccccchHHHHHHHHHHHhccCC
Confidence            6789999999999999999876544                      5777777654  233446678899999999999


Q ss_pred             CccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeeec
Q 024842          106 NLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHN  185 (262)
Q Consensus       106 ~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~  185 (262)
                      |++++++.+..        ......+++++|+. ++|.+++..   ....+++..++.++.|++.||.|||+.+  ++|+
T Consensus        59 ~i~~~~~~~~~--------~~~~~~~lv~e~~~-~~l~~~~~~---~~~~~~~~~~~~i~~~i~~al~~LH~~~--~~h~  124 (287)
T cd07840          59 NIVRLKEIVTS--------KGKGSIYMVFEYMD-HDLTGLLDS---PEVKFTESQIKCYMKQLLEGLQYLHSNG--ILHR  124 (287)
T ss_pred             CeeeheeeEec--------CCCCcEEEEecccc-ccHHHHHhc---cCCCCCHHHHHHHHHHHHHHHHHHHHCC--ceec
Confidence            99999988731        11367999999886 477776642   2246999999999999999999999988  9999


Q ss_pred             CCCCCcEEEecCCCCCCceEEeeccceeeccccC------ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecc
Q 024842          186 DVKPGNILITCRKGQPPLAILMDFGSARPAQSKF------ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELM  259 (262)
Q Consensus       186 dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~------~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~  259 (262)
                      ||+|+||+++.++    .++|+|||++.......      ...+..|.+||.+.....    .....|+|++|+++++|+
T Consensus       125 dl~p~nil~~~~~----~~~l~d~g~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~----~~~~~Dv~slG~~l~el~  196 (287)
T cd07840         125 DIKGSNILINNDG----VLKLADFGLARPYTKRNSADYTNRVITLWYRPPELLLGATR----YGPEVDMWSVGCILAELF  196 (287)
T ss_pred             cCcHHHeEEcCCC----CEEEccccceeeccCCCcccccccccccccCCceeeEcccc----CChHHHHHHHHHHHHHHH
Confidence            9999999998776    69999999998765432      123445666664432110    112367888888888877


Q ss_pred             cCC
Q 024842          260 FGR  262 (262)
Q Consensus       260 ~G~  262 (262)
                      +|+
T Consensus       197 t~~  199 (287)
T cd07840         197 LGK  199 (287)
T ss_pred             hCC
Confidence            774

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po

>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases

Probab=99.95  E-value=1.3e-27  Score=194.86  Aligned_cols=189  Identities=28%  Similarity=0.378  Sum_probs=145.9

Q ss_pred             eEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccch--HHHHHHHHHHHHhhhCCCC
Q 024842           28 YRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNN--EQLEMVREEIRVSSLFSHR  105 (262)
Q Consensus        28 y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~--~~~~~~~~E~~~l~~l~h~  105 (262)
                      |++.+.||.|++|.||+|.+..+++                      .+++|++.....  .....+.+|+.+++.++|+
T Consensus         1 y~~~~~i~~g~~~~v~~~~~~~~~~----------------------~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~   58 (283)
T cd05118           1 YQKLGKIGEGTYGVVYKARDKLTGE----------------------IVAIKKIKLRFESEGIPKTALREIKLLKELNHP   58 (283)
T ss_pred             CccceeeecCCCceEEEEEcCCCCc----------------------EEEEEEeccccccchhHHHHHHHHHHHHHhcCC
Confidence            6778899999999999999876554                      577776654422  3456788899999999999


Q ss_pred             CccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeeec
Q 024842          106 NLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHN  185 (262)
Q Consensus       106 ~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~  185 (262)
                      |++++++.+.          .....++++||+.+ ++.+.+..   ....+++..++.++.|++.||.|||+.+  ++|+
T Consensus        59 ~i~~~~~~~~----------~~~~~~~v~e~~~~-~l~~~l~~---~~~~~~~~~~~~~~~~i~~~l~~LH~~~--i~H~  122 (283)
T cd05118          59 NIIKLLDVFR----------HKGDLYLVFEFMDT-DLYKLIKD---RQRGLPESLIKSYLYQLLQGLAFCHSHG--ILHR  122 (283)
T ss_pred             CcchHHHhhc----------cCCCEEEEEeccCC-CHHHHHHh---hcccCCHHHHHHHHHHHHHHHHHHHHCC--eeec
Confidence            9999999873          35778999998865 77776652   2346899999999999999999999998  9999


Q ss_pred             CCCCCcEEEecCCCCCCceEEeeccceeeccccC-----ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheeccc
Q 024842          186 DVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMF  260 (262)
Q Consensus       186 dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~  260 (262)
                      ||+|+||+++.++    .++|+|||.+.......     ..+...|.+||.+.+-.    ......|+|++|+++++|++
T Consensus       123 dl~p~nili~~~~----~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~----~~~~~~Di~slG~~l~~l~t  194 (283)
T cd05118         123 DLKPENLLINTEG----VLKLADFGLARSFGSPVRPYTHYVVTRWYRAPELLLGDK----GYSTPVDIWSVGCIFAELLS  194 (283)
T ss_pred             CcCHHHEEECCCC----cEEEeeeeeeEecCCCcccccCccCcccccCcHHHhcCC----CCCchhHHHHHHHHHHHHHh
Confidence            9999999998766    69999999998765543     23445566666543210    11223688888888888887


Q ss_pred             CC
Q 024842          261 GR  262 (262)
Q Consensus       261 G~  262 (262)
                      |+
T Consensus       195 g~  196 (283)
T cd05118         195 RR  196 (283)
T ss_pred             CC
Confidence            74

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They

>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]

Probab=99.95  E-value=1.1e-28  Score=206.99  Aligned_cols=198  Identities=21%  Similarity=0.222  Sum_probs=147.4

Q ss_pred             eeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccch-HHHHHHHHHHHHh
Q 024842           21 VWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNN-EQLEMVREEIRVS   99 (262)
Q Consensus        21 ~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~-~~~~~~~~E~~~l   99 (262)
                      .-+..+...+.++||+|-||+|.+|....                       ...||+|+.+.... ....+|.+|+++|
T Consensus       533 ~EfPRs~L~~~ekiGeGqFGEVhLCeveg-----------------------~lkVAVK~Lr~~a~~~~r~~F~kEIkiL  589 (807)
T KOG1094|consen  533 VEFPRSRLRFKEKIGEGQFGEVHLCEVEG-----------------------PLKVAVKILRPDATKNARNDFLKEIKIL  589 (807)
T ss_pred             hhcchhheehhhhhcCcccceeEEEEecC-----------------------ceEEEEeecCcccchhHHHHHHHHHHHH
Confidence            33556788999999999999999998653                       23689998877644 4458999999999


Q ss_pred             hhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCC
Q 024842          100 SLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLE  179 (262)
Q Consensus       100 ~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~  179 (262)
                      .+++||||+.++++++.          .+.+++++||++.|+|.+++......  ....+....++.||++|++||.+.+
T Consensus       590 sqLkhPNIveLvGVC~~----------DePicmI~EYmEnGDLnqFl~aheap--t~~t~~~vsi~tqiasgmaYLes~n  657 (807)
T KOG1094|consen  590 SRLKHPNIVELLGVCVQ----------DDPLCMITEYMENGDLNQFLSAHELP--TAETAPGVSICTQIASGMAYLESLN  657 (807)
T ss_pred             hccCCCCeeEEEeeeec----------CCchHHHHHHHhcCcHHHHHHhccCc--ccccchhHHHHHHHHHHHHHHHhhc
Confidence            99999999999999853          56688999999999999998743211  1345566779999999999999999


Q ss_pred             CCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-ccCcccCCcccchhhhhh-hhhhhhhcCcccchheehee
Q 024842          180 PPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-ALGQRRYSCRNGLLSIVL-HLSELLSCGTVRVIQILMRE  257 (262)
Q Consensus       180 ~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-~~~~~~~~~~~d~~s~g~-~~~e~~~~~~v~~~g~~~~~  257 (262)
                        ++|||+.+.|+|++.+.    .+||+|||.++-.-+.. ........-|....++.. .+.+..+.+|+|++|+++||
T Consensus       658 --fVHrd~a~rNcLv~~e~----~iKiadfgmsR~lysg~yy~vqgr~vlpiRwmawEsillgkFttaSDvWafgvTlwE  731 (807)
T KOG1094|consen  658 --FVHRDLATRNCLVDGEF----TIKIADFGMSRNLYSGDYYRVQGRAVLPIRWMAWESILLGKFTTASDVWAFGVTLWE  731 (807)
T ss_pred             --hhhccccccceeecCcc----cEEecCcccccccccCCceeeecceeeeeeehhHHHHHhccccchhhhhhhHHHHHH
Confidence              99999999999998776    69999999998544333 222211111111112222 24455555677777777776


Q ss_pred             cc
Q 024842          258 LM  259 (262)
Q Consensus       258 l~  259 (262)
                      ++
T Consensus       732 ~~  733 (807)
T KOG1094|consen  732 VF  733 (807)
T ss_pred             HH
Confidence            54

>cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

Probab=99.95  E-value=6.8e-28  Score=196.51  Aligned_cols=184  Identities=22%  Similarity=0.229  Sum_probs=134.3

Q ss_pred             EeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc---hHHHHHHHHHHHHh---hhCCCCC
Q 024842           33 QLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN---NEQLEMVREEIRVS---SLFSHRN  106 (262)
Q Consensus        33 ~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~---~~~~~~~~~E~~~l---~~l~h~~  106 (262)
                      .||+|+||.||++.+..+++                      .+++|.+....   .........|..++   ....||+
T Consensus         1 ~lg~G~~g~Vy~~~~~~~~~----------------------~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   58 (279)
T cd05633           1 IIGRGGFGEVYGCRKADTGK----------------------MYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPF   58 (279)
T ss_pred             CcccCCCeEEEEEEECCCCc----------------------EEEEEEEEccccccchHHHHHHHHHHHHHHHhhCCCCc
Confidence            38999999999999876554                      56777554321   11112233444333   3447999


Q ss_pred             ccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeeecC
Q 024842          107 LLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHND  186 (262)
Q Consensus       107 i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~d  186 (262)
                      +++++..+          ...+..+++|||+.+++|.+++.    ....+++..+..++.|++.||.|||+.+  ++|+|
T Consensus        59 i~~~~~~~----------~~~~~~~lv~e~~~~~~L~~~i~----~~~~l~~~~~~~i~~qi~~al~~lH~~~--ivH~d  122 (279)
T cd05633          59 IVCMTYAF----------HTPDKLCFILDLMNGGDLHYHLS----QHGVFSEKEMRFYATEIILGLEHMHNRF--VVYRD  122 (279)
T ss_pred             EeEEEEEE----------ecCCeEEEEEecCCCCCHHHHHH----hcCCCCHHHHHHHHHHHHHHHHHHHHCC--cCCCC
Confidence            99998877          33567899999999999988775    3456999999999999999999999998  99999


Q ss_pred             CCCCcEEEecCCCCCCceEEeeccceeeccccC---ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecccCC
Q 024842          187 VKPGNILITCRKGQPPLAILMDFGSARPAQSKF---ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMFGR  262 (262)
Q Consensus       187 ikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~---~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~G~  262 (262)
                      |||+||+++.++    .++|+|||++.......   ..++..|.+||.... +.   ..-...|+|++|+++++|++|+
T Consensus       123 ikp~Nil~~~~~----~~~l~dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~---~~~~~~Di~slG~~l~~l~~g~  193 (279)
T cd05633         123 LKPANILLDEHG----HVRISDLGLACDFSKKKPHASVGTHGYMAPEVLQK-GT---AYDSSADWFSLGCMLFKLLRGH  193 (279)
T ss_pred             CCHHHEEECCCC----CEEEccCCcceeccccCccCcCCCcCccCHHHhcC-CC---CCCchhhhHHHHHHHHHHHhCC
Confidence            999999998766    69999999987553322   245666777765421 10   1112368888888888888774

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi

>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

Probab=99.95  E-value=7.4e-28  Score=196.07  Aligned_cols=184  Identities=23%  Similarity=0.257  Sum_probs=139.8

Q ss_pred             eecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc---chHHHHHHHHHHHHhhhCCCCCccch
Q 024842           34 LGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ---NNEQLEMVREEIRVSSLFSHRNLLPL  110 (262)
Q Consensus        34 ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~---~~~~~~~~~~E~~~l~~l~h~~i~~~  110 (262)
                      ||+|+||.||+|.+..+++                      .+++|.+...   .......+.+|+.+++.++|||++++
T Consensus         1 lg~g~~g~vy~~~~~~~~~----------------------~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~   58 (277)
T cd05577           1 LGKGGFGEVCACQVKATGK----------------------MYACKKLDKKRLKKRKGEQMALNEKKILEKVSSRFIVSL   58 (277)
T ss_pred             CCCCCceeEEEEEEcCCCc----------------------EEEEEEEehhhhhhhhhhHHHHHHHHHHHhCCCCCEeee
Confidence            6899999999999877655                      5676665432   12234456789999999999999999


Q ss_pred             hhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeeecCCCCC
Q 024842          111 LDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPG  190 (262)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~dikp~  190 (262)
                      .+.+          ...+..+++|||+.+++|.+++....  ...+++..++.++.|++.||.|||+.+  ++|+||+|+
T Consensus        59 ~~~~----------~~~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~~ql~~~l~~lH~~~--i~H~di~p~  124 (277)
T cd05577          59 AYAF----------ETKDDLCLVMTLMNGGDLKYHIYNVG--EPGFPEARAIFYAAQIICGLEHLHQRR--IVYRDLKPE  124 (277)
T ss_pred             eeEE----------ecCCeEEEEEecCCCCcHHHHHHHcC--cCCCCHHHHHHHHHHHHHHHHHHHhCC--cccCCCCHH
Confidence            8887          33567899999999999998876322  135899999999999999999999998  999999999


Q ss_pred             cEEEecCCCCCCceEEeeccceeeccccC----ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecccCC
Q 024842          191 NILITCRKGQPPLAILMDFGSARPAQSKF----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMFGR  262 (262)
Q Consensus       191 Nill~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~G~  262 (262)
                      ||+++.++    .++|+|||.+.......    ..+...|.+||.+-.-.     .....|+|++|+++++|++|+
T Consensus       125 Nil~~~~~----~~~l~dfg~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~-----~~~~~Di~slG~il~~l~~g~  191 (277)
T cd05577         125 NVLLDDHG----NVRISDLGLAVELKGGKKIKGRAGTPGYMAPEVLQGEV-----YDFSVDWFALGCTLYEMIAGR  191 (277)
T ss_pred             HEEECCCC----CEEEccCcchhhhccCCccccccCCCCcCCHHHhcCCC-----CCchhhhHHHHHHHHHHhhCC
Confidence            99998776    69999999887654221    23445566666542211     112467888888888887774

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of

>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

Probab=99.95  E-value=8.9e-28  Score=196.08  Aligned_cols=190  Identities=24%  Similarity=0.316  Sum_probs=143.8

Q ss_pred             eEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc--hHHHHHHHHHHHHhhhCCCC
Q 024842           28 YRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN--NEQLEMVREEIRVSSLFSHR  105 (262)
Q Consensus        28 y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~--~~~~~~~~~E~~~l~~l~h~  105 (262)
                      |++.+.||.|++|.||+|.+..+++                      .+++|++....  ......+.+|+.+++.++||
T Consensus         1 y~~~~~l~~g~~~~vy~~~~~~~~~----------------------~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~~~   58 (283)
T cd07835           1 YQKVEKIGEGTYGVVYKARDKLTGE----------------------IVALKKIRLETEDEGVPSTAIREISLLKELNHP   58 (283)
T ss_pred             CchheEecCCCCeEEEEEEEcCCCC----------------------EEEEEEeecccccccchhHHHHHHHHHHhcCCC
Confidence            6788999999999999999876654                      57777665432  22235677899999999999


Q ss_pred             CccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeeec
Q 024842          106 NLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHN  185 (262)
Q Consensus       106 ~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~  185 (262)
                      |++++++.+.          .....+++|+|+. ++|.+++....  ...+++..++.++.|++.||.|||+.+  ++|+
T Consensus        59 ~iv~~~~~~~----------~~~~~~iv~e~~~-~~l~~~~~~~~--~~~~~~~~~~~~~~~i~~~L~~lH~~~--~~H~  123 (283)
T cd07835          59 NIVRLLDVVH----------SENKLYLVFEFLD-LDLKKYMDSSP--LTGLDPPLIKSYLYQLLQGIAYCHSHR--VLHR  123 (283)
T ss_pred             CccCHhheec----------cCCeEEEEEeccC-cCHHHHHhhCC--CCCCCHHHHHHHHHHHHHHHHHHHHCC--eeCC
Confidence            9999999873          3577899999984 68888775321  135899999999999999999999988  9999


Q ss_pred             CCCCCcEEEecCCCCCCceEEeeccceeeccccC-----ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheeccc
Q 024842          186 DVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMF  260 (262)
Q Consensus       186 dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~  260 (262)
                      ||+|+||+++.++    .++|+|||++.......     ..++..|.+||.+..-.    .....+|+|++|+++|+|++
T Consensus       124 dl~p~nil~~~~~----~~~l~df~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~----~~~~~~Di~slG~~l~~l~~  195 (283)
T cd07835         124 DLKPQNLLIDREG----ALKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGSR----QYSTPVDIWSIGCIFAEMVN  195 (283)
T ss_pred             CCCHHHEEEcCCC----cEEEeecccccccCCCccccCccccccCCCCCceeecCc----ccCcHHHHHHHHHHHHHHHh
Confidence            9999999998766    69999999987653221     12345566776442211    11123678888888888887


Q ss_pred             CC
Q 024842          261 GR  262 (262)
Q Consensus       261 G~  262 (262)
                      |+
T Consensus       196 g~  197 (283)
T cd07835         196 RR  197 (283)
T ss_pred             CC
Confidence            74

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc

>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]

Probab=99.95  E-value=2.1e-29  Score=193.11  Aligned_cols=197  Identities=17%  Similarity=0.171  Sum_probs=154.0

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccch-HHHHHHHHHHHHhhhC-
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNN-EQLEMVREEIRVSSLF-  102 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~-~~~~~~~~E~~~l~~l-  102 (262)
                      .++.+-+..||.|.||+|++..+...++                      ..|+|++..... ...+++..|.....+- 
T Consensus        63 ~~~Lqdlg~iG~G~fG~V~KM~hk~sg~----------------------~mAVKrIr~~n~~keq~rll~e~d~~mks~  120 (361)
T KOG1006|consen   63 SDNLQDLGEIGNGAFGTVNKMLHKPSGK----------------------LMAVKRIRSNNIEKEQKRLLMEHDTVMKSS  120 (361)
T ss_pred             cchHHHHHHhcCCcchhhhhhhcCccCc----------------------EEEEEEeeeccchHHHHHHHHHHHHHHhhc
Confidence            4556667889999999999999887655                      788888876643 5567888888775544 


Q ss_pred             CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHH-hhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCC
Q 024842          103 SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKV-MQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPP  181 (262)
Q Consensus       103 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~-~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~  181 (262)
                      ++|||+++++..+.          .+.+|+.||.+. .++..+-+. .......++|..+-.++...+.||.||... ..
T Consensus       121 ~cp~IVkfyGa~F~----------EGdcWiCMELMd-~SlDklYk~vy~vq~~~ipE~Ilg~ItvatV~AL~yLK~~-lk  188 (361)
T KOG1006|consen  121 NCPNIVKFYGALFS----------EGDCWICMELMD-ISLDKLYKRVYSVQKSRIPENILGHITVATVDALDYLKEE-LK  188 (361)
T ss_pred             CCcHHHHHhhhhhc----------CCceeeeHHHHh-hhHHHHHHHHHHHHhccCcHhhhhheeeeehhHHHHHHHH-hh
Confidence            69999999999853          677999999653 455443332 122345599999999999999999999983 45


Q ss_pred             eeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC----ccCcccCCcccchhhhhhhhhhhhhcCcccchheehee
Q 024842          182 YAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRE  257 (262)
Q Consensus       182 ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~  257 (262)
                      |+|||+||+|||++..+    .+||+|||.+-......    ..|-..|++||.+-+.+- -+++  ++|+||+|++++|
T Consensus       189 iIHRDvKPSNILldr~G----~vKLCDFGIcGqLv~SiAkT~daGCrpYmAPERi~p~~~-gyDi--RSDvWSLGITL~E  261 (361)
T KOG1006|consen  189 IIHRDVKPSNILLDRHG----DVKLCDFGICGQLVDSIAKTVDAGCRPYMAPERIDPSDK-GYDI--RSDVWSLGITLYE  261 (361)
T ss_pred             hhhccCChhheEEecCC----CEeeecccchHhHHHHHHhhhccCCccccChhccCCccC-Ccch--hhhhhhhcceEee
Confidence            99999999999999888    69999999998765543    357788999998866543 2333  4799999999999


Q ss_pred             cccCC
Q 024842          258 LMFGR  262 (262)
Q Consensus       258 l~~G~  262 (262)
                      +.||+
T Consensus       262 vAtG~  266 (361)
T KOG1006|consen  262 VATGN  266 (361)
T ss_pred             eecCC
Confidence            99996

>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

Probab=99.95  E-value=1.6e-27  Score=191.64  Aligned_cols=187  Identities=22%  Similarity=0.318  Sum_probs=138.4

Q ss_pred             cCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCC
Q 024842           24 NENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFS  103 (262)
Q Consensus        24 ~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~  103 (262)
                      ..++|++.+.||+|+||.||++...                        +..+++|......  ..+.+.+|+.+++.++
T Consensus         4 ~~~~~~~~~~lg~g~~g~v~~~~~~------------------------~~~~~iK~~~~~~--~~~~~~~e~~~l~~~~   57 (254)
T cd05083           4 NLQKLTLGEIIGEGEFGAVLQGEYT------------------------GQKVAVKNIKCDV--TAQAFLEETAVMTKLH   57 (254)
T ss_pred             cHHHceeeeeeccCCCCceEecccC------------------------CCceEEEeecCcc--hHHHHHHHHHHHHhCC
Confidence            4578999999999999999988632                        2357777765432  2357888999999999


Q ss_pred             CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCee
Q 024842          104 HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYA  183 (262)
Q Consensus       104 h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~iv  183 (262)
                      |||++++++.+.           ....+++|||+.+++|.+++...  ....+++..++.++.|++.||.|||+.+  ++
T Consensus        58 ~~~i~~~~~~~~-----------~~~~~~v~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~~~qi~~al~~lH~~~--~~  122 (254)
T cd05083          58 HKNLVRLLGVIL-----------HNGLYIVMELMSKGNLVNFLRTR--GRALVSVIQLLQFSLDVAEGMEYLESKK--LV  122 (254)
T ss_pred             CCCcCeEEEEEc-----------CCCcEEEEECCCCCCHHHHHHhc--CcCCCCHHHHHHHHHHHHHHHHHHHhCC--ee
Confidence            999999998763           23468999999999999988632  2235889999999999999999999988  99


Q ss_pred             ecCCCCCcEEEecCCCCCCceEEeeccceeeccccC--ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheeccc
Q 024842          184 HNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF--ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMF  260 (262)
Q Consensus       184 H~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~--~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~  260 (262)
                      ||||||+||+++.++    .++|+|||++.......  ......|.+||.+-.-     ......|+|++|+++++|++
T Consensus       123 H~dl~p~nili~~~~----~~kl~Dfg~~~~~~~~~~~~~~~~~y~~pe~~~~~-----~~~~~~Dv~slG~~l~el~~  192 (254)
T cd05083         123 HRDLAARNILVSEDG----VAKVSDFGLARVGSMGVDNSKLPVKWTAPEALKHK-----KFSSKSDVWSYGVLLWEVFS  192 (254)
T ss_pred             ccccCcceEEEcCCC----cEEECCCccceeccccCCCCCCCceecCHHHhccC-----CcCchhhHHHHHHHHHHHHh
Confidence            999999999998766    69999999987643221  1222345555532111     11123566666666666554

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki

>cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

Probab=99.95  E-value=1.2e-27  Score=194.95  Aligned_cols=184  Identities=22%  Similarity=0.239  Sum_probs=135.4

Q ss_pred             EeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc---hHHHHHHHHHH---HHhhhCCCCC
Q 024842           33 QLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN---NEQLEMVREEI---RVSSLFSHRN  106 (262)
Q Consensus        33 ~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~---~~~~~~~~~E~---~~l~~l~h~~  106 (262)
                      .||+|+||.||++.+..+++                      .+++|.+....   ......+..|.   ..++...||+
T Consensus         1 ~ig~g~~g~Vy~~~~~~~~~----------------------~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   58 (278)
T cd05606           1 IIGRGGFGEVYGCRKADTGK----------------------MYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPF   58 (278)
T ss_pred             CcccCCCeEEEEEEEecCCC----------------------EEEEEEeeccccccchhHHHHHHHHHHHHHHHhCCCCc
Confidence            38999999999999876655                      56666554321   11111223333   3344567999


Q ss_pred             ccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeeecC
Q 024842          107 LLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHND  186 (262)
Q Consensus       107 i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~d  186 (262)
                      ++++...+          ...+..+++|||+.+++|.+++.    ....+++..++.++.|++.||.|||+.+  ++|+|
T Consensus        59 i~~~~~~~----------~~~~~~~~v~e~~~g~~L~~~l~----~~~~l~~~~~~~~~~ql~~~l~~lH~~~--i~H~d  122 (278)
T cd05606          59 IVCMSYAF----------HTPDKLSFILDLMNGGDLHYHLS----QHGVFSEAEMRFYAAEIILGLEHMHNRF--VVYRD  122 (278)
T ss_pred             Eeeeeeee----------ecCCEEEEEEecCCCCcHHHHHH----hcCCCCHHHHHHHHHHHHHHHHHHHHCC--EEcCC
Confidence            99998877          34667899999999999988775    4456999999999999999999999988  99999


Q ss_pred             CCCCcEEEecCCCCCCceEEeeccceeeccccC---ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecccCC
Q 024842          187 VKPGNILITCRKGQPPLAILMDFGSARPAQSKF---ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMFGR  262 (262)
Q Consensus       187 ikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~---~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~G~  262 (262)
                      |||+||+++.++    .++|+|||++.......   ..++..|.+||.+..-.    ......|+|++|+++++|++|+
T Consensus       123 i~p~nili~~~~----~~kl~dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~----~~~~~~Di~s~G~~l~~l~~g~  193 (278)
T cd05606         123 LKPANILLDEHG----HVRISDLGLACDFSKKKPHASVGTHGYMAPEVLQKGV----AYDSSADWFSLGCMLFKLLRGH  193 (278)
T ss_pred             CCHHHEEECCCC----CEEEccCcCccccCccCCcCcCCCcCCcCcHHhcCCC----CCCcccchHhHHHHHHHHHhCC
Confidence            999999998766    69999999987554322   24566677776653210    1122468888888888888875

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co

>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer

Probab=99.95  E-value=2.1e-27  Score=190.37  Aligned_cols=182  Identities=20%  Similarity=0.253  Sum_probs=135.5

Q ss_pred             EEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc-hHHHHHHHHHHHHhhhCCCCCccch
Q 024842           32 RQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN-NEQLEMVREEIRVSSLFSHRNLLPL  110 (262)
Q Consensus        32 ~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~  110 (262)
                      +.||+|+||.||+|....                       +..+++|...... ......+.+|+.+++.++|||++++
T Consensus         1 ~~ig~g~~g~vy~~~~~~-----------------------~~~~a~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~   57 (250)
T cd05085           1 ELLGKGNFGEVFKGTLKD-----------------------KTPVAVKTCKEDLPQELKIKFLSEARILKQYDHPNIVKL   57 (250)
T ss_pred             CccCCCCCceEEEEEecC-----------------------CcEEEEEecCCcCCHHHHHHHHHHHHHHHhCCCCCcCeE
Confidence            368999999999998542                       2357777665443 3334568889999999999999999


Q ss_pred             hhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeeecCCCCC
Q 024842          111 LDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPG  190 (262)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~dikp~  190 (262)
                      ++.+          ......+++|||+.+++|.+++..   ....+++..++.++.|++.+|.|+|+.+  ++|+||+|+
T Consensus        58 ~~~~----------~~~~~~~lv~e~~~~~~L~~~~~~---~~~~~~~~~~~~~~~~i~~~l~~lH~~~--~~H~dl~p~  122 (250)
T cd05085          58 IGVC----------TQRQPIYIVMELVPGGDFLSFLRK---KKDELKTKQLVKFALDAAAGMAYLESKN--CIHRDLAAR  122 (250)
T ss_pred             EEEE----------ecCCccEEEEECCCCCcHHHHHHh---cCCCCCHHHHHHHHHHHHHHHHHHHhCC--eeecccChh
Confidence            9887          335678999999999999987752   2345789999999999999999999988  999999999


Q ss_pred             cEEEecCCCCCCceEEeeccceeeccccCc------cCcccCCcccchhhhhhhhhhhhhcCcccchheeheeccc
Q 024842          191 NILITCRKGQPPLAILMDFGSARPAQSKFA------LGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMF  260 (262)
Q Consensus       191 Nill~~~~~~~~~~kl~Dfg~a~~~~~~~~------~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~  260 (262)
                      ||+++.++    .++|+|||++........      .....|.+||.+....     ....+|+|++|+++|++++
T Consensus       123 nili~~~~----~~~l~d~g~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-----~~~~~Di~slG~ll~~~~~  189 (250)
T cd05085         123 NCLVGENN----VLKISDFGMSRQEDDGIYSSSGLKQIPIKWTAPEALNYGR-----YSSESDVWSYGILLWETFS  189 (250)
T ss_pred             eEEEcCCC----eEEECCCccceeccccccccCCCCCCcccccCHHHhccCC-----CCchhHHHHHHHHHHHHhc
Confidence            99998766    699999999875432211      1223466665442211     1123566777766666665

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c

>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases

Probab=99.95  E-value=3.2e-27  Score=191.61  Aligned_cols=145  Identities=22%  Similarity=0.333  Sum_probs=117.7

Q ss_pred             EeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc-chHHHHHHHHHHHHhhhC-CCCCccch
Q 024842           33 QLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ-NNEQLEMVREEIRVSSLF-SHRNLLPL  110 (262)
Q Consensus        33 ~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~-~~~~~~~~~~E~~~l~~l-~h~~i~~~  110 (262)
                      .||+|+||.||+|.+..++..                    ..+++|..... .....+.+..|+.+++.+ +||||+++
T Consensus         2 ~lg~g~~g~v~~~~~~~~~~~--------------------~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~   61 (270)
T cd05047           2 VIGEGNFGQVLKARIKKDGLR--------------------MDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINL   61 (270)
T ss_pred             cCCCCCCceEEEEEEcCCCCe--------------------eEEEEEEccccCCHHHHHHHHHHHHHHHhhccCCCeeeE
Confidence            589999999999998765431                    13566666533 334456788999999999 79999999


Q ss_pred             hhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhh------------cCCCCCHHHHHHHHHHHHHHHHHHHcC
Q 024842          111 LDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQT------------KKEFFSTSDVLQIFYQICAGLKHMHSL  178 (262)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~------------~~~~~~~~~~~~i~~ql~~~l~~lH~~  178 (262)
                      ++.+          ......+++|||+.+++|.+++.....            ....+++.+++.++.|++.||+|||+.
T Consensus        62 ~~~~----------~~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~al~~lH~~  131 (270)
T cd05047          62 LGAC----------EHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQK  131 (270)
T ss_pred             EEEE----------ecCCCceEEEEeCCCCcHHHHHHhccccccccccccccCCcCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            9987          335668999999999999998864221            123478999999999999999999998


Q ss_pred             CCCeeecCCCCCcEEEecCCCCCCceEEeecccee
Q 024842          179 EPPYAHNDVKPGNILITCRKGQPPLAILMDFGSAR  213 (262)
Q Consensus       179 ~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~  213 (262)
                      +  ++|+||||+||+++.++    .++|+|||++.
T Consensus       132 ~--i~H~dikp~nili~~~~----~~kl~dfgl~~  160 (270)
T cd05047         132 Q--FIHRDLAARNILVGENY----VAKIADFGLSR  160 (270)
T ss_pred             C--EeecccccceEEEcCCC----eEEECCCCCcc
Confidence            8  99999999999998766    69999999985

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l

>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]

Probab=99.95  E-value=6.9e-28  Score=203.70  Aligned_cols=193  Identities=21%  Similarity=0.322  Sum_probs=155.5

Q ss_pred             CceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc-chHHHHHHHHHHHHhhhCCC
Q 024842           26 NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ-NNEQLEMVREEIRVSSLFSH  104 (262)
Q Consensus        26 ~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~-~~~~~~~~~~E~~~l~~l~h  104 (262)
                      ....+.+.||.|-||.||+|.-..-.+.                  ..-.||+|.-+.+ ..+..+.|..|..+++.++|
T Consensus       389 e~Itl~r~iG~GqFGdVy~gvYt~~~kg------------------e~iaVAvKtCK~d~t~d~tekflqEa~iMrnfdH  450 (974)
T KOG4257|consen  389 ELITLKRLIGEGQFGDVYKGVYTDPEKG------------------ERIAVAVKTCKTDCTPDDTEKFLQEASIMRNFDH  450 (974)
T ss_pred             hhccHHHhhcCCcccceeeeEecccccC------------------cceeeeeehhccCCChhhHHHHHHHHHHHHhCCC
Confidence            3445567899999999999986543221                  1124788877663 55667899999999999999


Q ss_pred             CCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeee
Q 024842          105 RNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAH  184 (262)
Q Consensus       105 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH  184 (262)
                      |||+++++++.           ....|++||.++-|.|..+++.   +...++..+...++.||+.||.|||+..  .+|
T Consensus       451 phIikLIGv~~-----------e~P~WivmEL~~~GELr~yLq~---nk~sL~l~tL~ly~~Qi~talaYLeSkr--fVH  514 (974)
T KOG4257|consen  451 PHIIKLIGVCV-----------EQPMWIVMELAPLGELREYLQQ---NKDSLPLRTLTLYCYQICTALAYLESKR--FVH  514 (974)
T ss_pred             cchhheeeeee-----------ccceeEEEecccchhHHHHHHh---ccccchHHHHHHHHHHHHHHHHHHHhhc--hhh
Confidence            99999999985           4568999999999999998874   4455999999999999999999999988  999


Q ss_pred             cCCCCCcEEEecCCCCCCceEEeeccceeeccccCc-----------------cCcccCCcccchhhhhhhhhhhhhcCc
Q 024842          185 NDVKPGNILITCRKGQPPLAILMDFGSARPAQSKFA-----------------LGQRRYSCRNGLLSIVLHLSELLSCGT  247 (262)
Q Consensus       185 ~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~~-----------------~~~~~~~~~~d~~s~g~~~~e~~~~~~  247 (262)
                      |||-+.|||+.+..    .+||+|||+++.++....                 ..-..|+.++|+|-+|+++||+++.|.
T Consensus       515 RDIAaRNiLVsSp~----CVKLaDFGLSR~~ed~~yYkaS~~kLPIKWmaPESINfRrFTtASDVWMFgVCmWEIl~lGv  590 (974)
T KOG4257|consen  515 RDIAARNILVSSPQ----CVKLADFGLSRYLEDDAYYKASRGKLPIKWMAPESINFRRFTTASDVWMFGVCMWEILSLGV  590 (974)
T ss_pred             hhhhhhheeecCcc----eeeecccchhhhccccchhhccccccceeecCccccchhcccchhhHHHHHHHHHHHHHhcC
Confidence            99999999998766    899999999997764432                 233355666788888888888888888


Q ss_pred             ccchheehe
Q 024842          248 VRVIQILMR  256 (262)
Q Consensus       248 v~~~g~~~~  256 (262)
                      -++.|+-.-
T Consensus       591 kPfqgvkNs  599 (974)
T KOG4257|consen  591 KPFQGVKNS  599 (974)
T ss_pred             Ccccccccc
Confidence            888777543

>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

Probab=99.95  E-value=1.4e-27  Score=197.33  Aligned_cols=200  Identities=26%  Similarity=0.357  Sum_probs=143.8

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc--hHHHHHHHHHHHHhhhC
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN--NEQLEMVREEIRVSSLF  102 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~--~~~~~~~~~E~~~l~~l  102 (262)
                      .++|++.+.||.|++|.||+|.+..+++                      .+++|++....  ......+.+|+++++.+
T Consensus         7 ~~~y~~~~~lg~g~~~~v~~~~~~~~~~----------------------~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l   64 (311)
T cd07866           7 LRDYEILGKLGEGTFGEVYKARQIKTGR----------------------VVALKKILMHNEKDGFPITALREIKILKKL   64 (311)
T ss_pred             cccEEEEEEeccCCCEEEEEEEECCCCc----------------------EEEEEEEEeccCCCCcchhHHHHHHHHHhc
Confidence            4789999999999999999999877655                      56666554332  11224566899999999


Q ss_pred             CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCe
Q 024842          103 SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPY  182 (262)
Q Consensus       103 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~i  182 (262)
                      +||||+++++.+......  ........+++|+|+.. ++.+.+.   .....+++..++.++.|++.||.|||+.+  +
T Consensus        65 ~h~~i~~~~~~~~~~~~~--~~~~~~~~~lv~~~~~~-~l~~~~~---~~~~~~~~~~~~~i~~~l~~al~~lH~~~--i  136 (311)
T cd07866          65 KHPNVVPLIDMAVERPDK--SKRKRGSVYMVTPYMDH-DLSGLLE---NPSVKLTESQIKCYMLQLLEGINYLHENH--I  136 (311)
T ss_pred             CCCCccchhhheeccccc--ccccCceEEEEEecCCc-CHHHHHh---ccccCCCHHHHHHHHHHHHHHHHHHHhCC--e
Confidence            999999999876421110  01223457899998764 5555443   13446999999999999999999999998  9


Q ss_pred             eecCCCCCcEEEecCCCCCCceEEeeccceeeccccCc----------------cCcccCCcccchhhhhhhhhhhhhcC
Q 024842          183 AHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKFA----------------LGQRRYSCRNGLLSIVLHLSELLSCG  246 (262)
Q Consensus       183 vH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~~----------------~~~~~~~~~~d~~s~g~~~~e~~~~~  246 (262)
                      +|+||||+||+++.++    .++|+|||++........                .++..|.+||.+...    .......
T Consensus       137 ~H~dl~p~nil~~~~~----~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~----~~~~~~~  208 (311)
T cd07866         137 LHRDIKAANILIDNQG----ILKIADFGLARPYDGPPPNPKGGGGGGTRKYTNLVVTRWYRPPELLLGE----RRYTTAV  208 (311)
T ss_pred             ecCCCCHHHEEECCCC----CEEECcCccchhccCCCcccccCCcccccccccceeccCcCChHHhhCC----CccCchh
Confidence            9999999999998776    699999999976543221                123345555543211    0112246


Q ss_pred             cccchheeheecccCC
Q 024842          247 TVRVIQILMRELMFGR  262 (262)
Q Consensus       247 ~v~~~g~~~~~l~~G~  262 (262)
                      |+|++|+++++|++|+
T Consensus       209 Dv~slG~il~el~~g~  224 (311)
T cd07866         209 DIWGIGCVFAEMFTRR  224 (311)
T ss_pred             HhHHHHHHHHHHHhCC
Confidence            8888888888888874

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic

>KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms]

Probab=99.95  E-value=2.6e-27  Score=206.65  Aligned_cols=202  Identities=19%  Similarity=0.224  Sum_probs=168.8

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhC-C
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLF-S  103 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l-~  103 (262)
                      .+.|++.+.||+|.+|.||+++...+++                      ..|+|+....... .++++.|.++++.+ .
T Consensus        18 ~d~~ei~evig~Gtygkv~k~k~~~~~~----------------------~aa~kI~~~~~d~-deEiE~eynil~~~~~   74 (953)
T KOG0587|consen   18 ADIFEIIEVIGNGTYGKVYKGRHVKTGQ----------------------LAAIKIMDPTEDE-EEEIELEYNMLKKYSH   74 (953)
T ss_pred             CCccEEEEEEeeccceeEEEEeeeecCc----------------------eeeeEeecCCccc-cHHHHHHHHHHHhccC
Confidence            5678999999999999999999887765                      4566655544333 36677888999888 5


Q ss_pred             CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCee
Q 024842          104 HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYA  183 (262)
Q Consensus       104 h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~iv  183 (262)
                      |||++.++++|...-     ....+.+|+|||||.+|+..|+++...  +..+.|+.+..|++.++.|+.+||.+.  ++
T Consensus        75 hpnv~~fyg~~~k~~-----~~~~DqLWLVMEfC~gGSVTDLVKn~~--g~rl~E~~IaYI~re~lrgl~HLH~nk--vi  145 (953)
T KOG0587|consen   75 HPNVATFYGAFIKKD-----PGNGDQLWLVMEFCGGGSVTDLVKNTK--GNRLKEEWIAYILREILRGLAHLHNNK--VI  145 (953)
T ss_pred             CCCcceEEEEEEEec-----CCCCCeEEEEeeccCCccHHHHHhhhc--ccchhhHHHHHHHHHHHHHHHHHhhcc--ee
Confidence            999999999986432     256788999999999999999998776  566999999999999999999999988  99


Q ss_pred             ecCCCCCcEEEecCCCCCCceEEeeccceeecccc-----CccCcccCCcccchhhhhhhhhhhhhcCcccchheeheec
Q 024842          184 HNDVKPGNILITCRKGQPPLAILMDFGSARPAQSK-----FALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMREL  258 (262)
Q Consensus       184 H~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~-----~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l  258 (262)
                      |||||=.|||++.++    .+||.|||.+.+.++-     ...|++.|++||.+-...-.-+.+-++.|+||+|++..||
T Consensus       146 HRDikG~NiLLT~e~----~VKLvDFGvSaQldsT~grRnT~iGtP~WMAPEViac~e~~d~tyd~R~D~WsLGITaIEl  221 (953)
T KOG0587|consen  146 HRDIKGQNVLLTENA----EVKLVDFGVSAQLDSTVGRRNTFIGTPYWMAPEVIACDESPDATYDYRSDLWSLGITAIEM  221 (953)
T ss_pred             eecccCceEEEeccC----cEEEeeeeeeeeeecccccccCcCCCcccccceeeecccCCCCCcccccchhhccceeehh
Confidence            999999999998887    6999999999987653     4579999999998855444455666789999999999999


Q ss_pred             ccCC
Q 024842          259 MFGR  262 (262)
Q Consensus       259 ~~G~  262 (262)
                      -.|.
T Consensus       222 adG~  225 (953)
T KOG0587|consen  222 AEGA  225 (953)
T ss_pred             cCCC
Confidence            8774

>cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

Probab=99.95  E-value=1.5e-27  Score=194.51  Aligned_cols=190  Identities=27%  Similarity=0.302  Sum_probs=141.6

Q ss_pred             eEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc-hHHHHHHHHHHHHhhhCC-CC
Q 024842           28 YRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN-NEQLEMVREEIRVSSLFS-HR  105 (262)
Q Consensus        28 y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~-~~~~~~~~~E~~~l~~l~-h~  105 (262)
                      |++.+.||+|+||.||+|.+..+++                      .+++|+..... ........+|+..++.+. |+
T Consensus         1 y~~~~~lg~g~~~~v~~~~~~~~~~----------------------~~aik~~~~~~~~~~~~~~~~e~~~l~~l~~h~   58 (282)
T cd07831           1 YKILGKIGEGTFSEVLKAQSRKTGK----------------------YYAIKCMKKHFKSLEQVNNLREIQALRRLSPHP   58 (282)
T ss_pred             CceEeeccccccceEEEEEEcCCCc----------------------EEEEEEehhccCCchhhhHHHHHHHHhhcCCCC
Confidence            6789999999999999999876554                      57777665431 112223456888888885 99


Q ss_pred             CccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeeec
Q 024842          106 NLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHN  185 (262)
Q Consensus       106 ~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~  185 (262)
                      |++++++.+..        ...+..+++||++. +++.+.+..   ....+++..++.++.|++.||.|||+.+  ++|+
T Consensus        59 ~i~~~~~~~~~--------~~~~~~~lv~e~~~-~~l~~~l~~---~~~~~~~~~~~~~~~qi~~~L~~LH~~~--i~H~  124 (282)
T cd07831          59 NILRLIEVLFD--------RKTGRLALVFELMD-MNLYELIKG---RKRPLPEKRVKSYMYQLLKSLDHMHRNG--IFHR  124 (282)
T ss_pred             CccceEEEEec--------CCCCcEEEEEecCC-ccHHHHHHh---ccCCCCHHHHHHHHHHHHHHHHHHHHCC--ceec
Confidence            99999998732        22367899999886 577776642   2346899999999999999999999988  9999


Q ss_pred             CCCCCcEEEecCCCCCCceEEeeccceeeccccC----ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecccC
Q 024842          186 DVKPGNILITCRKGQPPLAILMDFGSARPAQSKF----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMFG  261 (262)
Q Consensus       186 dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~G  261 (262)
                      ||+|+||+++. +    .++|+|||++.......    ..++..|.+||.+..-+.    .....|+|++|+++++|++|
T Consensus       125 dl~p~ni~l~~-~----~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~----~~~~~Di~slGv~l~el~~~  195 (282)
T cd07831         125 DIKPENILIKD-D----ILKLADFGSCRGIYSKPPYTEYISTRWYRAPECLLTDGY----YGPKMDIWAVGCVFFEILSL  195 (282)
T ss_pred             ccCHHHEEEcC-C----CeEEEecccccccccCCCcCCCCCCcccCChhHhhcCCC----CCcchhHHHHHHHHHHHHcC
Confidence            99999999987 4    69999999998654322    234556777775432211    11246888888888888876


Q ss_pred             C
Q 024842          262 R  262 (262)
Q Consensus       262 ~  262 (262)
                      +
T Consensus       196 ~  196 (282)
T cd07831         196 F  196 (282)
T ss_pred             C
Confidence            3

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation.

>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros

Probab=99.95  E-value=2.1e-27  Score=192.37  Aligned_cols=195  Identities=21%  Similarity=0.292  Sum_probs=138.0

Q ss_pred             EeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc-hHHHHHHHHHHHHhhhCCCCCccchh
Q 024842           33 QLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN-NEQLEMVREEIRVSSLFSHRNLLPLL  111 (262)
Q Consensus        33 ~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~~  111 (262)
                      .||+|+||.||+|++......                ......+++|.+.... ......+.+|+.+++.++||||++++
T Consensus         2 ~lg~g~~g~vy~~~~~~~~~~----------------~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~   65 (269)
T cd05044           2 FLGSGAFGEVYEGTATDILGP----------------GSGPIRVAVKTLRKGATDQEKKEFLKEAHLMSNFNHPNIVKLL   65 (269)
T ss_pred             ccccccceeEEeeeecccccC----------------cccceeehhhhhhcccchhhHHHHHHHHHHHHhcCCCCeeeEe
Confidence            589999999999987643210                0122467888765442 23456788899999999999999999


Q ss_pred             hhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhh---cCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeeecCCC
Q 024842          112 DHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQT---KKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVK  188 (262)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~---~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~dik  188 (262)
                      +.+.          .....+++||++.+++|.+++.....   ....+++..+..++.|++.||.|||+.+  ++|+||+
T Consensus        66 ~~~~----------~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~--i~H~dl~  133 (269)
T cd05044          66 GVCL----------LNEPQYIIMELMEGGDLLSYLRDARVERFGPPLLTLKELLDICLDVAKGCVYLEQMH--FIHRDLA  133 (269)
T ss_pred             eeec----------CCCCeEEEEeccCCCcHHHHHHHhhhcccCCccccHHHHHHHHHHHHHHHHHHHhCC--cccCCCC
Confidence            8873          35568999999999999998864322   1234788999999999999999999988  9999999


Q ss_pred             CCcEEEecCC-CCCCceEEeeccceeeccccCc-------cCcccCCcccchhhhhhhhhhhhhcCcccchheeheeccc
Q 024842          189 PGNILITCRK-GQPPLAILMDFGSARPAQSKFA-------LGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMF  260 (262)
Q Consensus       189 p~Nill~~~~-~~~~~~kl~Dfg~a~~~~~~~~-------~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~  260 (262)
                      |+||+++.++ +....++|+|||++........       ..+..|.+||.+...     ......|+|++|+++|+|++
T Consensus       134 p~nil~~~~~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-----~~~~~~Dv~slG~il~ellt  208 (269)
T cd05044         134 ARNCLVSEKGYDADRVVKIGDFGLARDIYKSDYYRKEGEGLLPVRWMAPESLLDG-----KFTTQSDVWSFGVLMWEILT  208 (269)
T ss_pred             hheEEEecCCCCCCcceEECCcccccccccccccccCcccCCCccccCHHHHccC-----CcccchhHHHHHHHHHHHHH
Confidence            9999998654 2233699999999875432211       123345555533211     11123556666666666554

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male

>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

Probab=99.95  E-value=2.2e-27  Score=191.36  Aligned_cols=184  Identities=22%  Similarity=0.272  Sum_probs=136.3

Q ss_pred             EEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc---hHHHHHHHHHHHH-hhhCCCCCc
Q 024842           32 RQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN---NEQLEMVREEIRV-SSLFSHRNL  107 (262)
Q Consensus        32 ~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~---~~~~~~~~~E~~~-l~~l~h~~i  107 (262)
                      +.||.|++|.||+|.+..+++                      .+++|.+....   ......+..|..+ ....+|+|+
T Consensus         2 ~~l~~g~~~~v~~a~~~~~~~----------------------~vavK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i   59 (260)
T cd05611           2 KPISKGAFGSVYLAKKRSTGD----------------------YFAIKVLKKSDMIAKNQVTNVKAERAIMMIQGESPYV   59 (260)
T ss_pred             ccCCcCCCeeEEEEEecCCCC----------------------eEEEEEecchhhhHHHHHHHHHHHHHHHhhcCCCCCe
Confidence            579999999999999876554                      57777664332   1122233444443 455689999


Q ss_pred             cchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeeecCC
Q 024842          108 LPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDV  187 (262)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~di  187 (262)
                      +++++.+          ......|+++||+.+++|.+++.    ....+++..++.++.|++.||.|||+.+  ++|+||
T Consensus        60 ~~~~~~~----------~~~~~~~lv~e~~~~~~L~~~l~----~~~~~~~~~~~~i~~qi~~aL~~lH~~~--i~H~dl  123 (260)
T cd05611          60 AKLYYSF----------QSKDYLYLVMEYLNGGDCASLIK----TLGGLPEDWAKQYIAEVVLGVEDLHQRG--IIHRDI  123 (260)
T ss_pred             eeeeeeE----------EcCCeEEEEEeccCCCCHHHHHH----HcCCCCHHHHHHHHHHHHHHHHHHHHCC--eecCCC
Confidence            9999887          33567999999999999999886    3456899999999999999999999988  999999


Q ss_pred             CCCcEEEecCCCCCCceEEeeccceeeccc-cCccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecccCC
Q 024842          188 KPGNILITCRKGQPPLAILMDFGSARPAQS-KFALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMFGR  262 (262)
Q Consensus       188 kp~Nill~~~~~~~~~~kl~Dfg~a~~~~~-~~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~G~  262 (262)
                      +|+||+++.++    .++|+|||++..... ....++..|.+|+..-...     .....|+|++|+++++|++|+
T Consensus       124 ~p~nil~~~~~----~~~l~dfg~~~~~~~~~~~~~~~~y~~pe~~~~~~-----~~~~~Dv~slG~il~~l~~g~  190 (260)
T cd05611         124 KPENLLIDQTG----HLKLTDFGLSRNGLENKKFVGTPDYLAPETILGVG-----DDKMSDWWSLGCVIFEFLFGY  190 (260)
T ss_pred             CHHHeEECCCC----cEEEeecccceeccccccCCCCcCccChhhhcCCC-----CcchhhhHHHHHHHHHHHHCC
Confidence            99999998766    699999998875432 2234555666666543221     123467777777777777763

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do

>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

Probab=99.95  E-value=8.8e-28  Score=196.63  Aligned_cols=197  Identities=17%  Similarity=0.182  Sum_probs=141.0

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc-hHHHHHHHHHHHHhhhCC
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN-NEQLEMVREEIRVSSLFS  103 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~-~~~~~~~~~E~~~l~~l~  103 (262)
                      .++|...+.||+|+||.||++.+..+++                      .+++|++.... ......+.+|+.++..+.
T Consensus         3 ~~~~~~~~~lg~G~~g~vy~~~~~~~~~----------------------~~aiK~~~~~~~~~~~~~~~~e~~~l~~~~   60 (288)
T cd06616           3 AEDLKDLGEIGRGAFGTVNKMLHKPSGT----------------------IMAVKRIRSTVDEKEQKRLLMDLDVVMRSS   60 (288)
T ss_pred             HHHhHHHHHhCCCCceEEEEEEECCCCC----------------------EEEEEEehhccChHHHHHHHHHHHHHHHhc
Confidence            3567778899999999999999876654                      67888765432 334567888999998886


Q ss_pred             -CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhh-hcCCCCCHHHHHHHHHHHHHHHHHHHcC-CC
Q 024842          104 -HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQ-TKKEFFSTSDVLQIFYQICAGLKHMHSL-EP  180 (262)
Q Consensus       104 -h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~-~~~~~~~~~~~~~i~~ql~~~l~~lH~~-~~  180 (262)
                       |+||+++++.+.          .....+++|+++. .++.++..... .....+++..+..++.|++.||+|||+. + 
T Consensus        61 ~~~~iv~~~~~~~----------~~~~~~~~~e~~~-~~l~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~-  128 (288)
T cd06616          61 DCPYIVKFYGALF----------REGDCWICMELMD-ISLDKFYKYVYEVLKSVIPEEILGKIAVATVKALNYLKEELK-  128 (288)
T ss_pred             CCCCEeeeeeEEe----------cCCcEEEEEeccc-CCHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhcCC-
Confidence             999999999773          3566889999865 45555433221 2235699999999999999999999974 7 


Q ss_pred             CeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC----ccCcccCCcccchhhhhhhhhhhhhcCcccchheehe
Q 024842          181 PYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMR  256 (262)
Q Consensus       181 ~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~  256 (262)
                       ++||||||+||+++.++    .++|+|||++.......    ..++..|.+||.+....  .......+|+|++|++++
T Consensus       129 -i~H~dlkp~Nil~~~~~----~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~--~~~~~~~~Di~slG~il~  201 (288)
T cd06616         129 -IIHRDVKPSNILLDRNG----NIKLCDFGISGQLVDSIAKTRDAGCRPYMAPERIDPSA--RDGYDVRSDVWSLGITLY  201 (288)
T ss_pred             -eeccCCCHHHEEEccCC----cEEEeecchhHHhccCCccccccCccCccCHHHhcccc--ccCCcchhhhhHHHHHHH
Confidence             99999999999998766    69999999987543321    23445566665442211  001112356777777777


Q ss_pred             ecccCC
Q 024842          257 ELMFGR  262 (262)
Q Consensus       257 ~l~~G~  262 (262)
                      +|++|+
T Consensus       202 el~~g~  207 (288)
T cd06616         202 EVATGK  207 (288)
T ss_pred             HHHhCC
Confidence            776664

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates

>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

Probab=99.95  E-value=3e-27  Score=193.28  Aligned_cols=188  Identities=17%  Similarity=0.286  Sum_probs=146.9

Q ss_pred             ceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCCCCC
Q 024842           27 RYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSHRN  106 (262)
Q Consensus        27 ~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~h~~  106 (262)
                      .|.-.+.||+|++|.||++.+..+++                      .+++|+.........+.+.+|+.+++.++|||
T Consensus        20 ~~~~~~~lg~g~~g~v~~~~~~~~~~----------------------~~~iK~~~~~~~~~~~~~~~e~~~l~~~~h~~   77 (285)
T cd06648          20 YLDNFVKIGEGSTGIVCIATDKSTGR----------------------QVAVKKMDLRKQQRRELLFNEVVIMRDYQHPN   77 (285)
T ss_pred             hhhcceEeccCCCeEEEEEEECCCCC----------------------EEEEEEEeccchhHHHHHHHHHHHHHHcCCCC
Confidence            56667899999999999999876544                      57777765555455567889999999999999


Q ss_pred             ccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeeecC
Q 024842          107 LLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHND  186 (262)
Q Consensus       107 i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~d  186 (262)
                      ++++++.+.          .....+++++|+.+++|.+++.    . ..+++..++.++.|++.||.|||+.+  ++|||
T Consensus        78 vv~~~~~~~----------~~~~~~~v~e~~~~~~L~~~~~----~-~~~~~~~~~~~~~ql~~~l~~lH~~~--i~H~d  140 (285)
T cd06648          78 IVEMYSSYL----------VGDELWVVMEFLEGGALTDIVT----H-TRMNEEQIATVCLAVLKALSFLHAQG--VIHRD  140 (285)
T ss_pred             hheEEEEEE----------cCCeEEEEEeccCCCCHHHHHH----h-CCCCHHHHHHHHHHHHHHHHHHHhCC--eecCC
Confidence            999999873          3567899999999999998875    2 45899999999999999999999998  99999


Q ss_pred             CCCCcEEEecCCCCCCceEEeeccceeeccccC-----ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecccC
Q 024842          187 VKPGNILITCRKGQPPLAILMDFGSARPAQSKF-----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMFG  261 (262)
Q Consensus       187 ikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~G  261 (262)
                      |+|+||+++.++    .++|+|||.+.......     ..++..|.+||....-.     .....|+|++|+++++|++|
T Consensus       141 l~p~Nil~~~~~----~~~l~d~g~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-----~~~~~Dv~slGv~l~ell~g  211 (285)
T cd06648         141 IKSDSILLTSDG----RVKLSDFGFCAQVSKEVPRRKSLVGTPYWMAPEVISRLP-----YGTEVDIWSLGIMVIEMVDG  211 (285)
T ss_pred             CChhhEEEcCCC----cEEEcccccchhhccCCcccccccCCccccCHHHhcCCC-----CCCcccHHHHHHHHHHHHhC
Confidence            999999998776    69999999876543221     23555666666442211     11246788888888887777


Q ss_pred             C
Q 024842          262 R  262 (262)
Q Consensus       262 ~  262 (262)
                      +
T Consensus       212 ~  212 (285)
T cd06648         212 E  212 (285)
T ss_pred             C
Confidence            4

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun

>PTZ00024 cyclin-dependent protein kinase; Provisional

Probab=99.95  E-value=8.6e-28  Score=200.89  Aligned_cols=191  Identities=24%  Similarity=0.297  Sum_probs=140.4

Q ss_pred             CCceE-EEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchH--------------HH
Q 024842           25 ENRYR-ILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNE--------------QL   89 (262)
Q Consensus        25 ~~~y~-~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~--------------~~   89 (262)
                      .++|. +.+.||.|+||.||+|.+..+++                      .+++|++......              ..
T Consensus         7 ~~ry~~~~~~ig~G~~g~vy~~~~~~~~~----------------------~vaiK~~~~~~~~~~~~~~~~~~~~~~~~   64 (335)
T PTZ00024          7 SERYIQKGAHLGEGTYGKVEKAYDTLTGK----------------------IVAIKKVKIIEISNDVTKDRQLVGMCGIH   64 (335)
T ss_pred             ccchhhhhhcccCCCceeEEEEEECCCCC----------------------eEEEEEeeccccccccccchhhhcccccc
Confidence            35665 46779999999999999887655                      4555544322111              01


Q ss_pred             HHHHHHHHHhhhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHH
Q 024842           90 EMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQIC  169 (262)
Q Consensus        90 ~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~  169 (262)
                      ..+.+|+.+++.++|+||+++++.+.          .....+++||++. ++|.+++.    ....+++..+..++.|++
T Consensus        65 ~~~~~E~~~l~~l~h~~iv~~~~~~~----------~~~~~~lv~e~~~-~~l~~~l~----~~~~~~~~~~~~~~~ql~  129 (335)
T PTZ00024         65 FTTLRELKIMNEIKHENIMGLVDVYV----------EGDFINLVMDIMA-SDLKKVVD----RKIRLTESQVKCILLQIL  129 (335)
T ss_pred             hhHHHHHHHHHhCCCcceeeeeEEEe----------cCCcEEEEEeccc-cCHHHHHH----hcCCCCHHHHHHHHHHHH
Confidence            24678999999999999999999873          3567899999886 68888775    445589999999999999


Q ss_pred             HHHHHHHcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-------------------ccCcccCCccc
Q 024842          170 AGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-------------------ALGQRRYSCRN  230 (262)
Q Consensus       170 ~~l~~lH~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-------------------~~~~~~~~~~~  230 (262)
                      .||.|||+.+  ++|+||+|+||+++.++    .++|+|||++.....+.                   ..++..|.+||
T Consensus       130 ~aL~~LH~~~--i~H~dl~~~nill~~~~----~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE  203 (335)
T PTZ00024        130 NGLNVLHKWY--FMHRDLSPANIFINSKG----ICKIADFGLARRYGYPPYSDTLSKDETMQRREEMTSKVVTLWYRAPE  203 (335)
T ss_pred             HHHHHHHhCC--eecccccHHHeEECCCC----CEEECCccceeecccccccccccccccccccccccccccccCCCCCh
Confidence            9999999988  99999999999998776    69999999997654111                   12234466666


Q ss_pred             chhhhhhhhhhhhhcCcccchheeheecccCC
Q 024842          231 GLLSIVLHLSELLSCGTVRVIQILMRELMFGR  262 (262)
Q Consensus       231 d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~G~  262 (262)
                      .+.....    .....|+|++|+++++|++|+
T Consensus       204 ~~~~~~~----~~~~~Dv~slG~~l~el~tg~  231 (335)
T PTZ00024        204 LLMGAEK----YHFAVDMWSVGCIFAELLTGK  231 (335)
T ss_pred             hcccCCC----CCcHHHHHHHHHHHHHHHhCC
Confidence            5432111    112357777777777777764

>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3

Probab=99.95  E-value=2.3e-27  Score=192.64  Aligned_cols=160  Identities=16%  Similarity=0.260  Sum_probs=122.9

Q ss_pred             eEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc--chHHHHHHHHHHHHhhhCCCC
Q 024842           28 YRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ--NNEQLEMVREEIRVSSLFSHR  105 (262)
Q Consensus        28 y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~--~~~~~~~~~~E~~~l~~l~h~  105 (262)
                      |++.+.||+|+||.||+|.+.....                   .+..+++|.+...  .....+++.+|+.+++.++||
T Consensus         1 ~~~~~~ig~g~~g~v~~~~~~~~~~-------------------~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~   61 (273)
T cd05074           1 FTLGRMLGKGEFGSVREAQLKSEDG-------------------SFQKVAVKMLKADIFSSSDIEEFLREAACMKEFDHP   61 (273)
T ss_pred             CcchhcccCCCCCCEEeeEeeccCC-------------------CceEEEEEEeccccCChHHHHHHHHHHHHHhcCCCC
Confidence            6778899999999999998764322                   2346888877554  334456788999999999999


Q ss_pred             CccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhh--hcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCee
Q 024842          106 NLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQ--TKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYA  183 (262)
Q Consensus       106 ~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~--~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~iv  183 (262)
                      |++++++.+....    ........++++++..+++|.+++....  .....+++..++.++.|++.||+|||+.+  ++
T Consensus        62 ~i~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~--i~  135 (273)
T cd05074          62 NVIKLIGVSLRSR----AKGRLPIPMVILPFMKHGDLHTFLLMSRIGEEPFTLPLQTLVRFMIDIASGMEYLSSKN--FI  135 (273)
T ss_pred             CcceEEEEEccCC----CCCcccceEEEEecCCCCcHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHHhCC--Ee
Confidence            9999998764210    0011123578889999999988764321  12234788999999999999999999988  99


Q ss_pred             ecCCCCCcEEEecCCCCCCceEEeeccceeecc
Q 024842          184 HNDVKPGNILITCRKGQPPLAILMDFGSARPAQ  216 (262)
Q Consensus       184 H~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~  216 (262)
                      |+||||+||+++.+.    .++|+|||++....
T Consensus       136 H~dikp~nili~~~~----~~kl~dfg~~~~~~  164 (273)
T cd05074         136 HRDLAARNCMLNENM----TVCVADFGLSKKIY  164 (273)
T ss_pred             ecccchhhEEEcCCC----CEEECccccccccc
Confidence            999999999997665    69999999988653

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac

>KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms]

Probab=99.95  E-value=7.4e-28  Score=201.76  Aligned_cols=189  Identities=26%  Similarity=0.374  Sum_probs=152.2

Q ss_pred             CceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc---hHH-----HHHHHHHHH
Q 024842           26 NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN---NEQ-----LEMVREEIR   97 (262)
Q Consensus        26 ~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~---~~~-----~~~~~~E~~   97 (262)
                      .+|...+.+|.|+||.|++|.+.....                      .|++|.+....   ..+     ....-.|++
T Consensus       561 s~yttlq~lG~GAyGkV~lai~K~n~~----------------------eVViK~I~KeRIL~DtWvrDrkLGtVp~EIq  618 (772)
T KOG1152|consen  561 SDYTTLQPLGEGAYGKVNLAIHKENNY----------------------EVVIKMIFKERILVDTWVRDRKLGTVPSEIQ  618 (772)
T ss_pred             ccceeeeeccccccceEEEeeecccce----------------------EEEeeehhhhhhhhhhhhcccccCccchhHH
Confidence            469999999999999999999987644                      56666554331   111     223457999


Q ss_pred             HhhhCC---CCCccchhhhhHHHhhhccCCCCcceeEEEEeec-CCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHH
Q 024842           98 VSSLFS---HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVH-LDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLK  173 (262)
Q Consensus        98 ~l~~l~---h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~  173 (262)
                      +|..++   |+||+++++.|          ++.+..|+.||-. ++-+|++++.    ....++|.++..|++|++.|++
T Consensus       619 Ila~l~~~sH~NIlKlLdfF----------Eddd~yyl~te~hg~gIDLFd~IE----~kp~m~E~eAk~IFkQV~agi~  684 (772)
T KOG1152|consen  619 ILATLNKHSHENILKLLDFF----------EDDDYYYLETEVHGEGIDLFDFIE----FKPRMDEPEAKLIFKQVVAGIK  684 (772)
T ss_pred             HHHHhhhcCccchhhhhhee----------ecCCeeEEEecCCCCCcchhhhhh----ccCccchHHHHHHHHHHHhccc
Confidence            999997   99999999998          6678888888854 4567888886    5556999999999999999999


Q ss_pred             HHHcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC---ccCcccCCcccchhhhhhhhhhhhhcCcccc
Q 024842          174 HMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF---ALGQRRYSCRNGLLSIVLHLSELLSCGTVRV  250 (262)
Q Consensus       174 ~lH~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~---~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~  250 (262)
                      +||+++  |+|||||-+|+.++.++    .+||+|||.|....+..   -.|+..|++||-+.+-.+.--    ..|||+
T Consensus       685 hlh~~~--ivhrdikdenvivd~~g----~~klidfgsaa~~ksgpfd~f~gtv~~aapevl~g~~y~gk----~qdiwa  754 (772)
T KOG1152|consen  685 HLHDQG--IVHRDIKDENVIVDSNG----FVKLIDFGSAAYTKSGPFDVFVGTVDYAAPEVLGGEKYLGK----PQDIWA  754 (772)
T ss_pred             cccccC--ceecccccccEEEecCC----eEEEeeccchhhhcCCCcceeeeeccccchhhhCCCccCCC----cchhhh
Confidence            999999  99999999999999888    79999999998876654   368888998887765544322    278999


Q ss_pred             hheeheeccc
Q 024842          251 IQILMRELMF  260 (262)
Q Consensus       251 ~g~~~~~l~~  260 (262)
                      +|+++|-+++
T Consensus       755 lgillytivy  764 (772)
T KOG1152|consen  755 LGILLYTIVY  764 (772)
T ss_pred             hhheeeEEEe
Confidence            9999988765

>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

Probab=99.95  E-value=2.5e-27  Score=197.86  Aligned_cols=195  Identities=25%  Similarity=0.371  Sum_probs=142.6

Q ss_pred             ceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc--chHHHHHHHHHHHHhhhC-C
Q 024842           27 RYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ--NNEQLEMVREEIRVSSLF-S  103 (262)
Q Consensus        27 ~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~--~~~~~~~~~~E~~~l~~l-~  103 (262)
                      +|++.+.||+|+||.||++++....                    .+..+++|++...  .....+.+.+|+.+++.+ +
T Consensus         1 ~y~~~~~lg~G~~g~vy~~~~~~~~--------------------~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~~   60 (332)
T cd07857           1 RYELIKELGQGAYGIVCSARNAETS--------------------EEETVAIKKITNVFSKKILAKRALRELKLLRHFRG   60 (332)
T ss_pred             CceEEEEccccCCeEEEEEEeCCCC--------------------cCceEEEEEeccccccchhHHHHHHHHHHHHHhcC
Confidence            5899999999999999999987541                    1236778766532  223345677899999988 5


Q ss_pred             CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCee
Q 024842          104 HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYA  183 (262)
Q Consensus       104 h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~iv  183 (262)
                      ||||+++++....      ........+++++++. ++|.+++.    ....+++..++.++.|++.||.|||+.+  ++
T Consensus        61 h~~iv~~~~~~~~------~~~~~~~~~~~~e~~~-~~L~~~l~----~~~~~~~~~~~~~~~qi~~aL~~LH~~g--iv  127 (332)
T cd07857          61 HKNITCLYDMDIV------FPGNFNELYLYEELME-ADLHQIIR----SGQPLTDAHFQSFIYQILCGLKYIHSAN--VL  127 (332)
T ss_pred             CCChheeeeeeee------ccccCCcEEEEEeccc-CCHHHHHh----cCCCCCHHHHHHHHHHHHHHHHHHHhCC--cc
Confidence            9999999886431      0122345677888665 68887775    4556999999999999999999999998  99


Q ss_pred             ecCCCCCcEEEecCCCCCCceEEeeccceeeccccC---------ccCcccCCcccchhhhhhhhhhhhhcCcccchhee
Q 024842          184 HNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF---------ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQIL  254 (262)
Q Consensus       184 H~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~---------~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~  254 (262)
                      |+||||+||+++.++    .++|+|||++.......         ..++..|.+||.+.+..    ......|+|++|++
T Consensus       128 H~dlkp~Nili~~~~----~~kl~Dfg~a~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~----~~~~~~Di~slGv~  199 (332)
T cd07857         128 HRDLKPGNLLVNADC----ELKICDFGLARGFSENPGENAGFMTEYVATRWYRAPEIMLSFQ----SYTKAIDVWSVGCI  199 (332)
T ss_pred             cCCCCHHHeEEcCCC----CEEeCcCCCceecccccccccccccCcccCccccCcHHHhCCC----CCCcHHHHHHHHHH
Confidence            999999999998776    69999999998654321         13455666666542210    11223678888888


Q ss_pred             heecccCC
Q 024842          255 MRELMFGR  262 (262)
Q Consensus       255 ~~~l~~G~  262 (262)
                      +++|++|+
T Consensus       200 l~~l~~g~  207 (332)
T cd07857         200 LAELLGRK  207 (332)
T ss_pred             HHHHHhCC
Confidence            88877764

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co

>PHA02882 putative serine/threonine kinase; Provisional

Probab=99.95  E-value=2.2e-27  Score=194.99  Aligned_cols=198  Identities=15%  Similarity=0.148  Sum_probs=124.7

Q ss_pred             ecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchH-----------HHHH
Q 024842           23 INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNE-----------QLEM   91 (262)
Q Consensus        23 ~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~-----------~~~~   91 (262)
                      +.+++|++.+.||+|+||.||+|.+..++..                   ...+++|........           ....
T Consensus         9 i~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~-------------------~~~~~~k~~~~~~~~~~~e~~~~~~~~~~~   69 (294)
T PHA02882          9 ITGKEWKIDKLIGCGGFGCVYETQCASDHCI-------------------NNQAVAKIENLENETIVMETLVYNNIYDID   69 (294)
T ss_pred             cCCCceEEeeEEecCCCceEEEEEEcCCccc-------------------ccceEEEeccccCCchhhHHHHHHhhhhHH
Confidence            4567999999999999999999998765211                   012222221111100           0011


Q ss_pred             HHHHHHHhhhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHH
Q 024842           92 VREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAG  171 (262)
Q Consensus        92 ~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~  171 (262)
                      ...+...+..+.|++++++++....      ........+++++++. .++.+.+.    .....++..++.++.|++.|
T Consensus        70 ~~~~~~~~~~~~h~~i~~~~~~~~~------~~~~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~i~~qi~~~  138 (294)
T PHA02882         70 KIALWKNIHNIDHLGIPKYYGCGSF------KRCRMYYRFILLEKLV-ENTKEIFK----RIKCKNKKLIKNIMKDMLTT  138 (294)
T ss_pred             HHHHHHHhccCCCCCCCcEEEeeeE------ecCCceEEEEEEehhc-cCHHHHHH----hhccCCHHHHHHHHHHHHHH
Confidence            2233445667789999999876521      0011123456666543 35555544    23336788899999999999


Q ss_pred             HHHHHcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeecccc------------CccCcccCCcccchhhhhhhh
Q 024842          172 LKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSK------------FALGQRRYSCRNGLLSIVLHL  239 (262)
Q Consensus       172 l~~lH~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~------------~~~~~~~~~~~~d~~s~g~~~  239 (262)
                      |.|||+.+  ++||||||+|||++.++    .++|+|||+|......            ...+++.|++|+..-..    
T Consensus       139 l~~lH~~~--iiHrDiKp~Nill~~~~----~~~l~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~----  208 (294)
T PHA02882        139 LEYIHEHG--ISHGDIKPENIMVDGNN----RGYIIDYGIASHFIIHGKHIEYSKEQKDLHRGTLYYAGLDAHNGA----  208 (294)
T ss_pred             HHHHHhCC--eecCCCCHHHEEEcCCC----cEEEEEcCCceeeccCCcccccccccccccCCCccccCHHHhCCC----
Confidence            99999988  99999999999998665    6999999999865321            12355666665532111    


Q ss_pred             hhhhhcCcccchheeheecccC
Q 024842          240 SELLSCGTVRVIQILMRELMFG  261 (262)
Q Consensus       240 ~e~~~~~~v~~~g~~~~~l~~G  261 (262)
                       ......|+||+|++++||++|
T Consensus       209 -~~~~~~DiwSlG~~l~el~~g  229 (294)
T PHA02882        209 -CVTRRGDLESLGYCMLKWAGI  229 (294)
T ss_pred             -CCCcHHHHHHHHHHHHHHHhC
Confidence             111235666666666666665

>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional

Probab=99.95  E-value=2.5e-27  Score=192.04  Aligned_cols=186  Identities=23%  Similarity=0.275  Sum_probs=137.0

Q ss_pred             CceEEEEEe--ecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhC-
Q 024842           26 NRYRILRQL--GEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLF-  102 (262)
Q Consensus        26 ~~y~~~~~i--g~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l-  102 (262)
                      ++|++.+.+  |.|+||.||++.+..+++                      .+++|.........     .|+.....+ 
T Consensus        14 ~~~~~~~~~~lg~g~~g~v~~~~~~~~~~----------------------~~~~k~~~~~~~~~-----~e~~~~~~~~   66 (267)
T PHA03390         14 KNCEIVKKLKLIDGKFGKVSVLKHKPTQK----------------------LFVQKIIKAKNFNA-----IEPMVHQLMK   66 (267)
T ss_pred             HhhccccceeecCCCceEEEEEEEcCCCc----------------------EEEEEEEehhhcch-----hhHHHHHHhh
Confidence            456666666  999999999999877655                      56666554322111     122222222 


Q ss_pred             CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCe
Q 024842          103 SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPY  182 (262)
Q Consensus       103 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~i  182 (262)
                      +|||++++++.+.          .....+++|||+++++|.+++.    ....+++.+++.++.|++.||.|||+.+  +
T Consensus        67 ~h~~iv~~~~~~~----------~~~~~~iv~e~~~~~~L~~~l~----~~~~l~~~~~~~~~~qi~~~l~~lH~~~--i  130 (267)
T PHA03390         67 DNPNFIKLYYSVT----------TLKGHVLIMDYIKDGDLFDLLK----KEGKLSEAEVKKIIRQLVEALNDLHKHN--I  130 (267)
T ss_pred             cCCCEEEEEEEEe----------cCCeeEEEEEcCCCCcHHHHHH----hcCCCCHHHHHHHHHHHHHHHHHHHhCC--e
Confidence            7999999998873          3567999999999999999886    3346999999999999999999999998  9


Q ss_pred             eecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecccC
Q 024842          183 AHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMFG  261 (262)
Q Consensus       183 vH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~G  261 (262)
                      +|+||+|+||+++.++.   .++|+|||++....... ..++..|.+||.+.....     ....|+|++|+++++|++|
T Consensus       131 ~H~dl~p~nil~~~~~~---~~~l~dfg~~~~~~~~~~~~~~~~y~aPE~~~~~~~-----~~~~DvwslG~il~~l~~g  202 (267)
T PHA03390        131 IHNDIKLENVLYDRAKD---RIYLCDYGLCKIIGTPSCYDGTLDYFSPEKIKGHNY-----DVSFDWWAVGVLTYELLTG  202 (267)
T ss_pred             eeCCCCHHHEEEeCCCC---eEEEecCccceecCCCccCCCCCcccChhhhcCCCC-----CchhhHHHHHHHHHHHHHC
Confidence            99999999999986652   59999999988765432 245566777765533221     1235777777777777776


Q ss_pred             C
Q 024842          262 R  262 (262)
Q Consensus       262 ~  262 (262)
                      +
T Consensus       203 ~  203 (267)
T PHA03390        203 K  203 (267)
T ss_pred             C
Confidence            4

>KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms]

Probab=99.95  E-value=1.6e-28  Score=188.98  Aligned_cols=195  Identities=19%  Similarity=0.161  Sum_probs=152.6

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc-chHHHHHHHHHHHHhhhC-
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ-NNEQLEMVREEIRVSSLF-  102 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~-~~~~~~~~~~E~~~l~~l-  102 (262)
                      .++.+.+..||.|..|.|++++.+.++.                      ..|+|.+... +.+..+++...+.++.+- 
T Consensus        91 indl~~l~dlGsGtcG~V~k~~~rs~~~----------------------iiAVK~M~rt~Nkee~kRILmDldvv~~s~  148 (391)
T KOG0983|consen   91 INDLENLGDLGSGTCGQVWKMRFRSTGH----------------------IIAVKQMRRTGNKEENKRILMDLDVVLKSH  148 (391)
T ss_pred             hHHhhhHHhhcCCCccceEEEEEcccce----------------------EEEEEeecccCCHHHHHHHHHhhhHHhhcc
Confidence            4556778899999999999999987655                      6889988766 566678888888876554 


Q ss_pred             CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCe
Q 024842          103 SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPY  182 (262)
Q Consensus       103 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~i  182 (262)
                      .+|+|++.+++|+.          ....++.||.+ ...+.+++..   ..++++|..+=.+...+++||.||.++ .+|
T Consensus       149 dcpyIV~c~GyFi~----------n~dV~IcMelM-s~C~ekLlkr---ik~piPE~ilGk~tva~v~AL~YLKeK-H~v  213 (391)
T KOG0983|consen  149 DCPYIVQCFGYFIT----------NTDVFICMELM-STCAEKLLKR---IKGPIPERILGKMTVAIVKALYYLKEK-HGV  213 (391)
T ss_pred             CCCeeeeeeeEEee----------CchHHHHHHHH-HHHHHHHHHH---hcCCchHHhhhhhHHHHHHHHHHHHHh-cce
Confidence            59999999999964          45567777754 3345555542   346699999999999999999999984 349


Q ss_pred             eecCCCCCcEEEecCCCCCCceEEeeccceeeccccC----ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheec
Q 024842          183 AHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMREL  258 (262)
Q Consensus       183 vH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l  258 (262)
                      +|||+||+|||++..+    .+||+|||.+-.+.+..    ..|-+.|++||.+-..--..++  -+.||||+|+.++||
T Consensus       214 iHRDvKPSNILlDe~G----niKlCDFGIsGrlvdSkAhtrsAGC~~YMaPERidp~~~~kYD--iRaDVWSlGITlveL  287 (391)
T KOG0983|consen  214 IHRDVKPSNILLDERG----NIKLCDFGISGRLVDSKAHTRSAGCAAYMAPERIDPPDKPKYD--IRADVWSLGITLVEL  287 (391)
T ss_pred             eecccCccceEEccCC----CEEeecccccceeecccccccccCCccccCccccCCCCCCccc--hhhhhhhhccchhhh
Confidence            9999999999999888    69999999998765433    3577888888877444323333  357999999999999


Q ss_pred             ccCC
Q 024842          259 MFGR  262 (262)
Q Consensus       259 ~~G~  262 (262)
                      .||+
T Consensus       288 aTg~  291 (391)
T KOG0983|consen  288 ATGQ  291 (391)
T ss_pred             hccc
Confidence            9985

>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

Probab=99.95  E-value=2.7e-27  Score=196.42  Aligned_cols=193  Identities=26%  Similarity=0.348  Sum_probs=146.1

Q ss_pred             CceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc---chHHHHHHHHHHHHhhhC
Q 024842           26 NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ---NNEQLEMVREEIRVSSLF  102 (262)
Q Consensus        26 ~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~---~~~~~~~~~~E~~~l~~l  102 (262)
                      ..|+..+.||+|+||.||++.+..+++                      .+++|.+...   .......+.+|+.+++.+
T Consensus        25 ~~f~~~~~lg~G~~~~v~~~~~~~~~~----------------------~valK~~~~~~~~~~~~~~~~~~e~~~l~~l   82 (317)
T cd06635          25 KLFTDLREIGHGSFGAVYFARDVRTNE----------------------VVAIKKMSYSGKQSNEKWQDIIKEVKFLQRI   82 (317)
T ss_pred             hhhhhhheeccCCCeEEEEEEEcCCCc----------------------EEEEEEEecCCCCchHHHHHHHHHHHHHHhC
Confidence            458889999999999999999876544                      5777765432   233446788899999999


Q ss_pred             CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCe
Q 024842          103 SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPY  182 (262)
Q Consensus       103 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~i  182 (262)
                      +|||++++++.+.          .....+++|||+. +++.+.+..   ...++++..+..++.|++.||.|||+.+  +
T Consensus        83 ~h~~iv~~~~~~~----------~~~~~~lv~e~~~-g~l~~~~~~---~~~~l~~~~~~~i~~~i~~~l~~lH~~~--i  146 (317)
T cd06635          83 KHPNSIEYKGCYL----------REHTAWLVMEYCL-GSASDLLEV---HKKPLQEVEIAAITHGALQGLAYLHSHN--M  146 (317)
T ss_pred             CCCCEEEEEEEEe----------eCCeEEEEEeCCC-CCHHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHHHHCC--c
Confidence            9999999999873          3567899999986 477666542   3455899999999999999999999988  9


Q ss_pred             eecCCCCCcEEEecCCCCCCceEEeeccceeecccc-CccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecccC
Q 024842          183 AHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSK-FALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMFG  261 (262)
Q Consensus       183 vH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~-~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~G  261 (262)
                      +|+||+|+||+++.++    .++|+|||++...... ...++..|.+||.+.....  .......|+|++|+++++|++|
T Consensus       147 ~H~dL~p~Nil~~~~~----~~kl~dfg~~~~~~~~~~~~~~~~y~aPE~~~~~~~--~~~~~~~Dv~slGvil~el~~g  220 (317)
T cd06635         147 IHRDIKAGNILLTEPG----QVKLADFGSASIASPANSFVGTPYWMAPEVILAMDE--GQYDGKVDVWSLGITCIELAER  220 (317)
T ss_pred             ccCCCCcccEEECCCC----CEEEecCCCccccCCcccccCCccccChhhhhcCCC--CCCCccccHHHHHHHHHHHHhC
Confidence            9999999999998766    6999999998765432 2245556777665532110  0112246788888888888777


Q ss_pred             C
Q 024842          262 R  262 (262)
Q Consensus       262 ~  262 (262)
                      +
T Consensus       221 ~  221 (317)
T cd06635         221 K  221 (317)
T ss_pred             C
Confidence            4

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron

>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

Probab=99.95  E-value=2.4e-27  Score=194.49  Aligned_cols=185  Identities=17%  Similarity=0.275  Sum_probs=141.9

Q ss_pred             EEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCCCCCcc
Q 024842           29 RILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSHRNLL  108 (262)
Q Consensus        29 ~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~h~~i~  108 (262)
                      .....||+|+||.||++....+++                      .+++|++..........+.+|+.+++.++|+|++
T Consensus        23 ~~~~~lg~g~~g~v~~~~~~~~~~----------------------~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv   80 (292)
T cd06657          23 DNFIKIGEGSTGIVCIATVKSSGK----------------------LVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVV   80 (292)
T ss_pred             hhHHHcCCCCCeEEEEEEEcCCCe----------------------EEEEEEecccchhHHHHHHHHHHHHHhcCCcchh
Confidence            334679999999999999876554                      6777776555555566788999999999999999


Q ss_pred             chhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeeecCCC
Q 024842          109 PLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVK  188 (262)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~dik  188 (262)
                      ++++.+.          ..+..+++|||+.+++|.+++.     ...+++..++.++.|++.+|+|||+.+  ++|+||+
T Consensus        81 ~~~~~~~----------~~~~~~lv~e~~~~~~L~~~~~-----~~~~~~~~~~~~~~ql~~~l~~lH~~g--ivH~dl~  143 (292)
T cd06657          81 EMYNSYL----------VGDELWVVMEFLEGGALTDIVT-----HTRMNEEQIAAVCLAVLKALSVLHAQG--VIHRDIK  143 (292)
T ss_pred             heeeEEE----------eCCEEEEEEecCCCCcHHHHHh-----cCCCCHHHHHHHHHHHHHHHHHHHHCC--eecCCCC
Confidence            9999873          3577999999999999988764     234899999999999999999999998  9999999


Q ss_pred             CCcEEEecCCCCCCceEEeeccceeeccccC-----ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecccC
Q 024842          189 PGNILITCRKGQPPLAILMDFGSARPAQSKF-----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMFG  261 (262)
Q Consensus       189 p~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~G  261 (262)
                      |+||+++.++    .++|+|||++.......     ..++..|.+||.+.+..     .....|+|++|+++++|++|
T Consensus       144 p~Nilv~~~~----~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~-----~~~~~Dv~slGvil~el~tg  212 (292)
T cd06657         144 SDSILLTHDG----RVKLSDFGFCAQVSKEVPRRKSLVGTPYWMAPELISRLP-----YGPEVDIWSLGIMVIEMVDG  212 (292)
T ss_pred             HHHEEECCCC----CEEEcccccceecccccccccccccCccccCHHHhcCCC-----CCchhhHHHHHHHHHHHHhC
Confidence            9999998766    69999999887654322     23445566665432111     11135677777777776665

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.95  E-value=7.6e-28  Score=194.95  Aligned_cols=192  Identities=21%  Similarity=0.275  Sum_probs=150.2

Q ss_pred             eecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc---chHHHHHHHHHHHH
Q 024842           22 WINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ---NNEQLEMVREEIRV   98 (262)
Q Consensus        22 ~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~---~~~~~~~~~~E~~~   98 (262)
                      .+-..+|.++..||+|+||.|.+|..+.+.+                      .||+|+++..   ...+.+-...|-++
T Consensus       345 ~i~~tDFnFl~VlGKGSFGKVlLaerkgtdE----------------------LyAiKiLkKDViiQdDDvectm~EKrv  402 (683)
T KOG0696|consen  345 RIKATDFNFLMVLGKGSFGKVLLAERKGTDE----------------------LYAIKILKKDVIIQDDDVECTMVEKRV  402 (683)
T ss_pred             ceeecccceEEEeccCccceeeeecccCcch----------------------hhhhhhhccceeeecCcccceehhhhh
Confidence            5557789999999999999999999887766                      6777776544   22223334557777


Q ss_pred             hhhCC-CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHc
Q 024842           99 SSLFS-HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHS  177 (262)
Q Consensus        99 l~~l~-h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~  177 (262)
                      |+.-. -|.++++..+|          ++.+++|+||||+.+|+|.-.++    .-+.+.+..+..++..|+.||-+||+
T Consensus       403 LAL~~kppFL~qlHScF----------QTmDRLyFVMEyvnGGDLMyhiQ----Q~GkFKEp~AvFYAaEiaigLFFLh~  468 (683)
T KOG0696|consen  403 LALPGKPPFLVQLHSCF----------QTMDRLYFVMEYVNGGDLMYHIQ----QVGKFKEPVAVFYAAEIAIGLFFLHS  468 (683)
T ss_pred             eecCCCCchHHHHHHHh----------hhhhheeeEEEEecCchhhhHHH----HhcccCCchhhhhhHHHHHHhhhhhc
Confidence            77764 67888888888          56889999999999999987776    44559999999999999999999999


Q ss_pred             CCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeecc-----ccCccCcccCCcccchhhhhhhhhhhhh-cCcccch
Q 024842          178 LEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQ-----SKFALGQRRYSCRNGLLSIVLHLSELLS-CGTVRVI  251 (262)
Q Consensus       178 ~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~-----~~~~~~~~~~~~~~d~~s~g~~~~e~~~-~~~v~~~  251 (262)
                      +|  |++||||.+|||++.++    .+||+|||+++.--     ...-.+++.|.+||-+.      +.-+. .-|.|++
T Consensus       469 kg--IiYRDLKLDNvmLd~eG----HiKi~DFGmcKEni~~~~TTkTFCGTPdYiAPEIi~------YqPYgksvDWWa~  536 (683)
T KOG0696|consen  469 KG--IIYRDLKLDNVMLDSEG----HIKIADFGMCKENIFDGVTTKTFCGTPDYIAPEIIA------YQPYGKSVDWWAF  536 (683)
T ss_pred             CC--eeeeeccccceEeccCC----ceEeeecccccccccCCcceeeecCCCcccccceEE------ecccccchhHHHH
Confidence            99  99999999999999888    79999999998632     22335788887777542      11111 2467788


Q ss_pred             heeheecccC
Q 024842          252 QILMRELMFG  261 (262)
Q Consensus       252 g~~~~~l~~G  261 (262)
                      |+++|||+.|
T Consensus       537 GVLLyEmlaG  546 (683)
T KOG0696|consen  537 GVLLYEMLAG  546 (683)
T ss_pred             HHHHHHHHcC
Confidence            8888888776

>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

Probab=99.95  E-value=3e-27  Score=198.13  Aligned_cols=201  Identities=26%  Similarity=0.378  Sum_probs=145.3

Q ss_pred             CceeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc--chHHHHHHHHHH
Q 024842           19 GDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ--NNEQLEMVREEI   96 (262)
Q Consensus        19 ~~~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~--~~~~~~~~~~E~   96 (262)
                      ...|...++|.+.+.||+|++|.||+|.+..+++                      .+++|++...  .......+.+|+
T Consensus         8 ~~~~~~~~~y~~~~~ig~g~~g~v~~~~~~~~~~----------------------~vaiK~~~~~~~~~~~~~~~~~e~   65 (342)
T cd07879           8 KTVWELPERYTSLKQVGSGAYGSVCSAIDKRTGE----------------------KVAIKKLSRPFQSEIFAKRAYREL   65 (342)
T ss_pred             hhhhccccceEEEEEeeecCCeEEEEEEeCCCCc----------------------EEEEEEecCccccccchhHHHHHH
Confidence            3455567899999999999999999999876655                      5677765432  222335677899


Q ss_pred             HHhhhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHH
Q 024842           97 RVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMH  176 (262)
Q Consensus        97 ~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH  176 (262)
                      .+++.++||||+++++++...    .........+++++++.. ++.++.      ...+++..++.++.|++.||.|||
T Consensus        66 ~~l~~l~h~niv~~~~~~~~~----~~~~~~~~~~lv~e~~~~-~l~~~~------~~~~~~~~~~~~~~qi~~aL~~LH  134 (342)
T cd07879          66 TLLKHMQHENVIGLLDVFTSA----VSGDEFQDFYLVMPYMQT-DLQKIM------GHPLSEDKVQYLVYQMLCGLKYIH  134 (342)
T ss_pred             HHHHhcCCCCccchhheeccc----ccCCCCceEEEEeccccc-CHHHHH------cCCCCHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999987421    001122456899998753 554432      234899999999999999999999


Q ss_pred             cCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC--ccCcccCCcccchhhhhhhhhhhhhcCcccchhee
Q 024842          177 SLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF--ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQIL  254 (262)
Q Consensus       177 ~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~--~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~  254 (262)
                      +.+  ++||||||+||+++.++    .++|+|||++.......  ..++..|.+||.+....    ......|+||+|++
T Consensus       135 ~~~--i~H~dlkp~NIll~~~~----~~kL~dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~----~~~~~~Dv~slGvi  204 (342)
T cd07879         135 SAG--IIHRDLKPGNLAVNEDC----ELKILDFGLARHADAEMTGYVVTRWYRAPEVILNWM----HYNQTVDIWSVGCI  204 (342)
T ss_pred             HCC--cccCCCCHHHEEECCCC----CEEEeeCCCCcCCCCCCCCceeeecccChhhhcCcc----ccCchHHHHHHHHH
Confidence            998  99999999999998776    69999999987653322  23345566666543211    01123677777777


Q ss_pred             heecccCC
Q 024842          255 MRELMFGR  262 (262)
Q Consensus       255 ~~~l~~G~  262 (262)
                      +++|++|+
T Consensus       205 l~el~~g~  212 (342)
T cd07879         205 MAEMLTGK  212 (342)
T ss_pred             HHHHHhCC
Confidence            77777774

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13

>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

Probab=99.94  E-value=2.6e-27  Score=193.70  Aligned_cols=191  Identities=21%  Similarity=0.292  Sum_probs=151.1

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCCC
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSH  104 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~h  104 (262)
                      .+.|++.+.||.|++|.||++.+..+++                      .+++|.+..... ..+.+.+|+..++.++|
T Consensus        18 ~~~~~~~~~l~~g~~~~v~~~~~~~~~~----------------------~~~iK~~~~~~~-~~~~~~~e~~~l~~l~~   74 (286)
T cd06614          18 RELYKNLEKIGEGASGEVYKATDRATGK----------------------EVAIKKMRLRKQ-NKELIINEILIMKDCKH   74 (286)
T ss_pred             cccchHhHhccCCCCeEEEEEEEccCCc----------------------EEEEEEEecCch-hHHHHHHHHHHHHHCCC
Confidence            5679999999999999999999875433                      678887765544 45678889999999999


Q ss_pred             CCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeee
Q 024842          105 RNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAH  184 (262)
Q Consensus       105 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH  184 (262)
                      +|++++++.+.          .....+++++|+.+++|.+++....   ..+++..++.++.|++.||.|||+.+  ++|
T Consensus        75 ~~i~~~~~~~~----------~~~~~~lv~e~~~~~~L~~~l~~~~---~~l~~~~~~~i~~~i~~~L~~lH~~g--i~H  139 (286)
T cd06614          75 PNIVDYYDSYL----------VGDELWVVMEYMDGGSLTDIITQNF---VRMNEPQIAYVCREVLQGLEYLHSQN--VIH  139 (286)
T ss_pred             CCeeEEEEEEE----------ECCEEEEEEeccCCCcHHHHHHHhc---cCCCHHHHHHHHHHHHHHHHHHHhCC--eee
Confidence            99999999873          2577999999999999999886321   36999999999999999999999988  999


Q ss_pred             cCCCCCcEEEecCCCCCCceEEeeccceeeccccC-----ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecc
Q 024842          185 NDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELM  259 (262)
Q Consensus       185 ~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~  259 (262)
                      +||+|+||+++.++    .++|+|||++.......     ..++..|.+||.+..-     ..-...|+|++|+++|+|+
T Consensus       140 ~dl~p~ni~i~~~~----~~~l~d~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~-----~~~~~~Dv~slGvil~~l~  210 (286)
T cd06614         140 RDIKSDNILLSKDG----SVKLADFGFAAQLTKEKSKRNSVVGTPYWMAPEVIKRK-----DYGPKVDIWSLGIMCIEMA  210 (286)
T ss_pred             CCCChhhEEEcCCC----CEEECccchhhhhccchhhhccccCCcccCCHhHhcCC-----CCCCccccHHHHHHHHHHH
Confidence            99999999998766    69999999887554321     2344556666644221     1123478888888888888


Q ss_pred             cCC
Q 024842          260 FGR  262 (262)
Q Consensus       260 ~G~  262 (262)
                      +|+
T Consensus       211 ~g~  213 (286)
T cd06614         211 EGE  213 (286)
T ss_pred             hCC
Confidence            774

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou

>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

Probab=99.94  E-value=5.9e-27  Score=192.56  Aligned_cols=200  Identities=18%  Similarity=0.143  Sum_probs=142.4

Q ss_pred             ceeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc-hHHHHHHHHHHHH
Q 024842           20 DVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN-NEQLEMVREEIRV   98 (262)
Q Consensus        20 ~~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~-~~~~~~~~~E~~~   98 (262)
                      ...++.++|++.+.||+|++|.||+|.+..+++                      .+++|.+.... ......+..|+.+
T Consensus         9 ~~~~~~~~~~~~~~lg~g~~~~v~~~~~~~~~~----------------------~~avK~~~~~~~~~~~~~~~~e~~~   66 (296)
T cd06618           9 KYPADLNDLENLGEIGSGTCGQVYKMRFKKTGH----------------------VMAVKQMRRTGNKEENKRILMDLDV   66 (296)
T ss_pred             eccCCcchheeeeEeeccCCeEEEEEEECCCCe----------------------EEEEEEEeccCChHHHHHHHHHHHH
Confidence            344566889999999999999999999876544                      67777765432 2233455667766


Q ss_pred             hhhC-CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHc
Q 024842           99 SSLF-SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHS  177 (262)
Q Consensus        99 l~~l-~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~  177 (262)
                      +... .||||+++++++.          .....+++|+++. +++.++...   ....+++..+..++.|++.||.|||+
T Consensus        67 ~~~~~~~~~i~~~~~~~~----------~~~~~~~v~e~~~-~~l~~l~~~---~~~~l~~~~~~~i~~~i~~~l~~lH~  132 (296)
T cd06618          67 VLKSHDCPYIVKCYGYFI----------TDSDVFICMELMS-TCLDKLLKR---IQGPIPEDILGKMTVAIVKALHYLKE  132 (296)
T ss_pred             HHhccCCCchHhhheeee----------cCCeEEEEeeccC-cCHHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            6555 5999999999873          3567899999864 466666543   23468999999999999999999997


Q ss_pred             -CCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC----ccCcccCCcccchhhhhhhhhhhhhcCcccchh
Q 024842          178 -LEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQ  252 (262)
Q Consensus       178 -~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g  252 (262)
                       .+  ++|+||+|+||+++.++    .++|+|||++..+....    ..++..|.+||.+-.... ........|+||+|
T Consensus       133 ~~~--i~H~dl~p~nill~~~~----~~kL~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~-~~~~~~~~Di~slG  205 (296)
T cd06618         133 KHG--VIHRDVKPSNILLDASG----NVKLCDFGISGRLVDSKAKTRSAGCAAYMAPERIDPPDP-NPKYDIRADVWSLG  205 (296)
T ss_pred             hCC--EecCCCcHHHEEEcCCC----CEEECccccchhccCCCcccCCCCCccccCHhhcCCCCC-ccccccchhHHHHH
Confidence             47  99999999999998766    69999999987654321    123445555554321110 01122346777777


Q ss_pred             eeheecccCC
Q 024842          253 ILMRELMFGR  262 (262)
Q Consensus       253 ~~~~~l~~G~  262 (262)
                      +++++|++|+
T Consensus       206 ~il~el~~g~  215 (296)
T cd06618         206 ISLVELATGQ  215 (296)
T ss_pred             HHHHHHHhCC
Confidence            7777777764

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it

>cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases

Probab=99.94  E-value=1.2e-26  Score=185.91  Aligned_cols=182  Identities=27%  Similarity=0.334  Sum_probs=140.1

Q ss_pred             eecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc---chHHHHHHHHHHHHhhhCCCCCccch
Q 024842           34 LGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ---NNEQLEMVREEIRVSSLFSHRNLLPL  110 (262)
Q Consensus        34 ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~---~~~~~~~~~~E~~~l~~l~h~~i~~~  110 (262)
                      ||+|++|.||++.+...++                      .+++|.+...   .......+..|+.+++.++|||++++
T Consensus         1 lg~G~~~~v~~~~~~~~~~----------------------~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~   58 (250)
T cd05123           1 LGKGSFGKVLLVRKKDTGK----------------------LYAMKVLKKKKIIKRKEVEHTLTERNILSRINHPFIVKL   58 (250)
T ss_pred             CCCCCceEEEEEEECCCCc----------------------EEEEEEeehhhhcchHHHHHHHHHHHHHHHcCCCcHHHH
Confidence            6899999999999876544                      5677765433   22345678889999999999999999


Q ss_pred             hhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeeecCCCCC
Q 024842          111 LDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPG  190 (262)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~dikp~  190 (262)
                      ++.+          ......+++|+++.+++|.+++.    ....+++..++.++.|++.||.|||+.+  ++|+||+|+
T Consensus        59 ~~~~----------~~~~~~~~v~e~~~~~~L~~~l~----~~~~l~~~~~~~~~~qi~~~l~~lh~~~--~~H~~l~p~  122 (250)
T cd05123          59 HYAF----------QTEEKLYLVLEYAPGGELFSHLS----KEGRFSEERARFYAAEIVLALEYLHSLG--IIYRDLKPE  122 (250)
T ss_pred             HHHe----------ecCCeeEEEEecCCCCcHHHHHH----hcCCCCHHHHHHHHHHHHHHHHHHHHCC--ceecCCCcc
Confidence            9887          44677999999999999999886    3445899999999999999999999988  999999999


Q ss_pred             cEEEecCCCCCCceEEeeccceeecccc-----CccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecccCC
Q 024842          191 NILITCRKGQPPLAILMDFGSARPAQSK-----FALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMFGR  262 (262)
Q Consensus       191 Nill~~~~~~~~~~kl~Dfg~a~~~~~~-----~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~G~  262 (262)
                      ||+++.++    .++|+|||++......     ...++..|.+|+......     .....|+|++|++++++++|+
T Consensus       123 ni~~~~~~----~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~-----~~~~~D~~slG~~~~~l~~g~  190 (250)
T cd05123         123 NILLDADG----HIKLTDFGLAKELSSEGSRTNTFCGTPEYLAPEVLLGKG-----YGKAVDWWSLGVLLYEMLTGK  190 (250)
T ss_pred             eEEEcCCC----cEEEeecCcceecccCCCcccCCcCCccccChHHhCCCC-----CCchhhHHHHHHHHHHHHHCC
Confidence            99998766    6999999998875443     223455566665442211     112356777777777776663

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the

>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]

Probab=99.94  E-value=4.3e-28  Score=207.13  Aligned_cols=206  Identities=19%  Similarity=0.252  Sum_probs=170.0

Q ss_pred             CCCCceeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchH-HHHHHHH
Q 024842           16 NGGGDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNE-QLEMVRE   94 (262)
Q Consensus        16 ~~~~~~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~-~~~~~~~   94 (262)
                      .....-.|..++.++.++||+|+||.|++|.|...+.+.                   -.||+|.+...... ...+|..
T Consensus       100 ~~~lkclIpee~i~l~e~LG~GsFgvV~rg~Wt~psgk~-------------------V~VAVKclr~d~l~~~mddflr  160 (1039)
T KOG0199|consen  100 SIDLKCLIPEEQIKLYELLGEGSFGVVKRGTWTQPSGKH-------------------VNVAVKCLRDDSLNAIMDDFLR  160 (1039)
T ss_pred             CCCcceeccHHHHHHHHHhcCcceeeEeeccccCCCCcE-------------------EeEEEEeccCCccchhHHHHHH
Confidence            344456678889999999999999999999998754322                   26888888766433 6789999


Q ss_pred             HHHHhhhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHH
Q 024842           95 EIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKH  174 (262)
Q Consensus        95 E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~  174 (262)
                      |+.++..|+|+|++++|++.+           .....+|||.+..|+|.+.+..  .....+.-..+..++.||+.|+.|
T Consensus       161 Eas~M~~L~H~hliRLyGvVl-----------~qp~mMV~ELaplGSLldrLrk--a~~~~llv~~Lcdya~QiA~aM~Y  227 (1039)
T KOG0199|consen  161 EASHMLKLQHPHLIRLYGVVL-----------DQPAMMVFELAPLGSLLDRLRK--AKKAILLVSRLCDYAMQIAKAMQY  227 (1039)
T ss_pred             HHHHHHhccCcceeEEeeeec-----------cchhhHHhhhcccchHHHHHhh--ccccceeHHHHHHHHHHHHHHHHH
Confidence            999999999999999999975           3567889999999999998874  234558888999999999999999


Q ss_pred             HHcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-------------------ccCcccCCcccchhhh
Q 024842          175 MHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-------------------ALGQRRYSCRNGLLSI  235 (262)
Q Consensus       175 lH~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-------------------~~~~~~~~~~~d~~s~  235 (262)
                      |..++  .|||||-+.|+|+-...    .+||+|||+.+-....+                   ......|+..+|+|.+
T Consensus       228 Leskr--lvHRDLAARNlllaspr----tVKI~DFGLmRaLg~ned~Yvm~p~rkvPfAWCaPEsLrh~kFShaSDvWmy  301 (1039)
T KOG0199|consen  228 LESKR--LVHRDLAARNLLLASPR----TVKICDFGLMRALGENEDMYVMAPQRKVPFAWCAPESLRHRKFSHASDVWMY  301 (1039)
T ss_pred             Hhhhh--hhhhhhhhhhheecccc----eeeeecccceeccCCCCcceEecCCCcCcccccCHhHhccccccccchhhhh
Confidence            99988  99999999999996654    79999999998654332                   2455567888899999


Q ss_pred             hhhhhhhhhcCcccchheeheecc
Q 024842          236 VLHLSELLSCGTVRVIQILMRELM  259 (262)
Q Consensus       236 g~~~~e~~~~~~v~~~g~~~~~l~  259 (262)
                      |+++||||+.|..++.|+--+.++
T Consensus       302 GVTiWEMFtyGEePW~G~~g~qIL  325 (1039)
T KOG0199|consen  302 GVTIWEMFTYGEEPWVGCRGIQIL  325 (1039)
T ss_pred             hhhHHhhhccCCCCCCCCCHHHHH
Confidence            999999999999999887665543

>KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.94  E-value=2.4e-28  Score=188.26  Aligned_cols=184  Identities=30%  Similarity=0.416  Sum_probs=144.9

Q ss_pred             ceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc--chHHHHHHHHHHHHhhhCCC
Q 024842           27 RYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ--NNEQLEMVREEIRVSSLFSH  104 (262)
Q Consensus        27 ~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~--~~~~~~~~~~E~~~l~~l~h  104 (262)
                      +.+..+.||.|.||.||.+++..+++                      .+++|++..-  +-...+.+.+|+.++..++|
T Consensus        54 Di~PDRPIGYGAFGVVWsVTDPRdgr----------------------rvalkK~pnvfq~L~s~krvFre~kmLcfFkH  111 (449)
T KOG0664|consen   54 DIQPDRPIGYGAFGVVWSVTDPRSGK----------------------RVALKKMPNVFQNLASCKRVFREIKMLSSFRH  111 (449)
T ss_pred             cCCCCCcccccceeEEEeccCCCCcc----------------------chhHhhcchHHHHHHHHHHHHHHHHHHHhhcc
Confidence            34556889999999999999987655                      6788877543  34445778899999999999


Q ss_pred             CCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeee
Q 024842          105 RNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAH  184 (262)
Q Consensus       105 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH  184 (262)
                      .|++..+++..-.     .-....+.|+++|.+. .+|.+++.    ....++.+.++-+..||+.||+|||+.+  |.|
T Consensus       112 dNVLSaLDILQPp-----h~dfFqEiYV~TELmQ-SDLHKIIV----SPQ~Ls~DHvKVFlYQILRGLKYLHsA~--ILH  179 (449)
T KOG0664|consen  112 DNVLSLLDILQPA-----NPSFFQELYVLTELMQ-SDLHKIIV----SPQALTPDHVKVFVYQILRGLKYLHTAN--ILH  179 (449)
T ss_pred             ccHHHHHHhcCCC-----CchHHHHHHHHHHHHH-hhhhheec----cCCCCCcchhhhhHHHHHhhhHHHhhcc--hhh
Confidence            9999888765210     0011234666777544 46666665    6778999999999999999999999999  999


Q ss_pred             cCCCCCcEEEecCCCCCCceEEeeccceeecccc------------------CccCcccCCcccchhhhhhhhhhhhhcC
Q 024842          185 NDVKPGNILITCRKGQPPLAILMDFGSARPAQSK------------------FALGQRRYSCRNGLLSIVLHLSELLSCG  246 (262)
Q Consensus       185 ~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~------------------~~~~~~~~~~~~d~~s~g~~~~e~~~~~  246 (262)
                      |||||.|+|+.++.    .+||+|||+++..+..                  ...|...|+...|+||.||++.|++.+.
T Consensus       180 RDIKPGNLLVNSNC----vLKICDFGLARvee~d~~~hMTqEVVTQYYRAPEiLMGaRhYs~AvDiWSVGCIFaELLgRr  255 (449)
T KOG0664|consen  180 RDIKPGNLLVNSNC----ILKICDFGLARTWDQRDRLNMTHEVVTQYYRAPELLMGARRYTGAVDIWSVGCIFAELLQRK  255 (449)
T ss_pred             ccCCCccEEeccCc----eEEecccccccccchhhhhhhHHHHHHHHhccHHHhhcchhhcCccceehhhHHHHHHHhhh
Confidence            99999999996655    8999999999865432                  2368889999999999999999998754


Q ss_pred             cc
Q 024842          247 TV  248 (262)
Q Consensus       247 ~v  248 (262)
                      ..
T Consensus       256 IL  257 (449)
T KOG0664|consen  256 IL  257 (449)
T ss_pred             hh
Confidence            43

>PLN03224 probable serine/threonine protein kinase; Provisional

Probab=99.94  E-value=3.2e-26  Score=197.88  Aligned_cols=226  Identities=16%  Similarity=0.216  Sum_probs=147.9

Q ss_pred             ecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHH--------
Q 024842           23 INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVRE--------   94 (262)
Q Consensus        23 ~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~--------   94 (262)
                      ...++|++.++||+|+||.||+|.+...+...+.+      .........+..||+|++........+++.+        
T Consensus       142 ~~~d~F~i~~~LG~GgFG~VYkG~~~~~~~~~v~~------~~~~~~~~~~r~VAVK~l~~~~~~~~~~fl~e~~~~~~~  215 (507)
T PLN03224        142 WSSDDFQLRDKLGGGNFGITFEGLRLQADDQGVTQ------RSKLTAEQKKRRVVLKRVNMDRQGVRQDFLKTGTLAKGS  215 (507)
T ss_pred             ccccCceEeeEeecCCCeEEEEEEecccccchhhh------hccccccccCceEEEEEecccchhhHHHHHhhhhhhhcc
Confidence            35789999999999999999999875544322111      1111122234578999886654433334433        


Q ss_pred             ------HHHHhhhCCCCCc-----cchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhh------------
Q 024842           95 ------EIRVSSLFSHRNL-----LPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQT------------  151 (262)
Q Consensus        95 ------E~~~l~~l~h~~i-----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~------------  151 (262)
                            |+..+..++|.++     +++++++.....  ......+..++++||+.+++|.+++.....            
T Consensus       216 ~e~~~vE~~~l~~l~~~~l~~~~~~~~lg~~~~~~~--~g~~~~~~~~LV~Ey~~~gsL~~~L~~~~~~~~~~L~e~l~~  293 (507)
T PLN03224        216 AETGMVEAYMCAKIKRNPIAAASCAEYLGYFTSNTA--DGAFTKGSQWLVWKFESDATLGDALDGKLGPFPGCLEEFMMA  293 (507)
T ss_pred             cchhHHHHHHHHHhhcccchhhhhhhhhhhcccccc--cccccCCceEEEEEcCCCCcHHHHHhhccCCCcchHHHHHhc
Confidence                  4555555655443     445555432100  001123568999999999999988763210            


Q ss_pred             --------cCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC----
Q 024842          152 --------KKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF----  219 (262)
Q Consensus       152 --------~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~----  219 (262)
                              ....+++..++.++.|++.+|.|||+.+  ++||||||+||+++.++    .+||+|||++.......    
T Consensus       294 g~~l~~~~~~~~~~~~~~~~i~~ql~~aL~~lH~~~--ivHrDLKp~NILl~~~~----~~kL~DFGla~~~~~~~~~~~  367 (507)
T PLN03224        294 GKKIPDNMPQDKRDINVIKGVMRQVLTGLRKLHRIG--IVHRDIKPENLLVTVDG----QVKIIDFGAAVDMCTGINFNP  367 (507)
T ss_pred             CCchhhhcccccCCHHHHHHHHHHHHHHHHHHHHCC--eecCCCchHhEEECCCC----cEEEEeCcCccccccCCccCc
Confidence                    0122466788999999999999999988  99999999999998766    69999999997653321    


Q ss_pred             --ccCcccCCcccchhh-----------hh---hhhhhhhhc---CcccchheeheecccCC
Q 024842          220 --ALGQRRYSCRNGLLS-----------IV---LHLSELLSC---GTVRVIQILMRELMFGR  262 (262)
Q Consensus       220 --~~~~~~~~~~~d~~s-----------~g---~~~~e~~~~---~~v~~~g~~~~~l~~G~  262 (262)
                        ...++.|.+||.+..           ++   ......+..   -|+||+|+++++|++|.
T Consensus       368 ~~g~~tp~Y~aPE~l~~~~~~~~~~~~~~~~~l~~~~~~yg~~~~~DvwSlGvil~em~~~~  429 (507)
T PLN03224        368 LYGMLDPRYSPPEELVMPQSCPRAPAPAMAALLSPFAWLYGRPDLFDSYTAGVLLMQMCVPE  429 (507)
T ss_pred             cccCCCcceeChhhhcCCCCCCccchhhhhhhhhhhHHhcCCCCccchhhHHHHHHHHHhCC
Confidence              123567888876532           11   111222222   49999999999998863

>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

Probab=99.94  E-value=7.8e-27  Score=190.25  Aligned_cols=189  Identities=27%  Similarity=0.357  Sum_probs=143.5

Q ss_pred             eEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc--hHHHHHHHHHHHHhhhCCCC
Q 024842           28 YRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN--NEQLEMVREEIRVSSLFSHR  105 (262)
Q Consensus        28 y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~--~~~~~~~~~E~~~l~~l~h~  105 (262)
                      |++.+.||+|++|.||+|.+..+++                      .+++|.+....  ....+.+..|+.+++.++|+
T Consensus         1 y~~~~~ig~g~~~~vy~~~~~~~~~----------------------~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~~~   58 (282)
T cd07829           1 YEKLEKLGEGTYGVVYKARDKKTGE----------------------IVALKKIRLDNEEEGIPSTALREISLLKELKHP   58 (282)
T ss_pred             CeeehcccccCcceEEEeeecCCCc----------------------EEEEEEeccccccccccHHHHHHHHHHHhcCCC
Confidence            6778899999999999999876654                      67777666542  33346677899999999999


Q ss_pred             CccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeeec
Q 024842          106 NLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHN  185 (262)
Q Consensus       106 ~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~  185 (262)
                      |++++++.+.          .....++++|++. ++|.+++...   ...+++..++.++.|++.||.+||+++  ++|+
T Consensus        59 ~i~~~~~~~~----------~~~~~~~v~e~~~-~~l~~~i~~~---~~~~~~~~~~~~~~~i~~~l~~LH~~~--i~H~  122 (282)
T cd07829          59 NIVKLLDVIH----------TERKLYLVFEYCD-MDLKKYLDKR---PGPLSPNLIKSIMYQLLRGLAYCHSHR--ILHR  122 (282)
T ss_pred             CHHHHHhhhh----------cCCceEEEecCcC-cCHHHHHHhh---ccCCCHHHHHHHHHHHHHHHHHHHHCC--cccC
Confidence            9999999884          2467999999887 5898887632   245999999999999999999999998  9999


Q ss_pred             CCCCCcEEEecCCCCCCceEEeeccceeeccccC-----ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheeccc
Q 024842          186 DVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMF  260 (262)
Q Consensus       186 dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~  260 (262)
                      ||+|+||+++.++    .++|+|||.+.......     ...+..|.+||.+....    ..-...|+|++|++++++++
T Consensus       123 ~l~~~ni~~~~~~----~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~----~~~~~~Dv~slG~~l~~l~~  194 (282)
T cd07829         123 DLKPQNILINRDG----VLKLADFGLARAFGIPLRTYTHEVVTLWYRAPEILLGSK----HYSTAVDIWSVGCIFAEMIT  194 (282)
T ss_pred             CCChheEEEcCCC----CEEEecCCcccccCCCccccCccccCcCcCChHHhcCCc----CCCccccHHHHHHHHHHHHh
Confidence            9999999998766    69999999988654332     12234455665442210    11123677777777777776


Q ss_pred             CC
Q 024842          261 GR  262 (262)
Q Consensus       261 G~  262 (262)
                      |+
T Consensus       195 ~~  196 (282)
T cd07829         195 GK  196 (282)
T ss_pred             CC
Confidence            63

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the

>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

Probab=99.94  E-value=3.9e-27  Score=194.69  Aligned_cols=194  Identities=26%  Similarity=0.354  Sum_probs=147.1

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhc---cchHHHHHHHHHHHHhhh
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLI---QNNEQLEMVREEIRVSSL  101 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~---~~~~~~~~~~~E~~~l~~  101 (262)
                      .+.|...+.||+|++|.||+|++..+++                      .+++|.+..   ......+++.+|+.+++.
T Consensus        14 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~----------------------~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~   71 (308)
T cd06634          14 EKLFSDLREIGHGSFGAVYFARDVRNSE----------------------VVAIKKMSYSGKQSNEKWQDIIKEVRFLQK   71 (308)
T ss_pred             HHHHHHHHheeeCCCEEEEEEEEcCCCc----------------------EEEEEEEecccccChHHHHHHHHHHHHHHh
Confidence            4568888999999999999999876544                      567776543   223334667889999999


Q ss_pred             CCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCC
Q 024842          102 FSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPP  181 (262)
Q Consensus       102 l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~  181 (262)
                      ++|+|++++.+++.          .....+++|||+. +++.+.+..   ....+++..++.++.|++.||.|||+.+  
T Consensus        72 l~h~~i~~~~~~~~----------~~~~~~lv~e~~~-~~l~~~~~~---~~~~l~~~~~~~~~~~l~~~l~~LH~~~--  135 (308)
T cd06634          72 LRHPNTIQYRGCYL----------REHTAWLVMEYCL-GSASDLLEV---HKKPLQEVEIAAVTHGALQGLAYLHSHN--  135 (308)
T ss_pred             CCCCCcccEEEEEE----------cCCeeEEEEEccC-CCHHHHHHH---cCCCCCHHHHHHHHHHHHHHHHHHHhCC--
Confidence            99999999998873          2567899999986 577766542   3445899999999999999999999988  


Q ss_pred             eeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheeccc
Q 024842          182 YAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMF  260 (262)
Q Consensus       182 ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~  260 (262)
                      ++|+||+|+||+++.++    .++|+|||++....+.. ..++..|.+||.+......  ......|+|++|+++++|++
T Consensus       136 i~H~dl~p~nil~~~~~----~~kl~dfg~~~~~~~~~~~~~~~~y~aPE~~~~~~~~--~~~~~~Di~slG~il~el~~  209 (308)
T cd06634         136 MIHRDVKAGNILLSEPG----LVKLGDFGSASIMAPANXFVGTPYWMAPEVILAMDEG--QYDGKVDVWSLGITCIELAE  209 (308)
T ss_pred             cccCCCCHHhEEECCCC----cEEECCcccceeecCcccccCCccccCHHHHhhcccC--CCCcccchHHHHHHHHHHHc
Confidence            99999999999998766    69999999988655432 2455667777665322110  11124688888888888887


Q ss_pred             CC
Q 024842          261 GR  262 (262)
Q Consensus       261 G~  262 (262)
                      |+
T Consensus       210 g~  211 (308)
T cd06634         210 RK  211 (308)
T ss_pred             CC
Confidence            74

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin

>KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms]

Probab=99.94  E-value=9e-27  Score=186.60  Aligned_cols=194  Identities=24%  Similarity=0.336  Sum_probs=155.1

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCCC
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSH  104 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~h  104 (262)
                      .++|.+...+|+|.||.|-.+.+..++.                      .+|+|+++.-... .+...-|++++.++.+
T Consensus        88 ~~Ry~i~~~lGeGtFGkV~ec~D~~~~~----------------------~vAlKIik~V~kY-reAa~iEi~vLqki~~  144 (415)
T KOG0671|consen   88 TNRYEIVDLLGEGTFGKVVECWDRETKE----------------------HVALKIIKNVDKY-REAALIEIEVLQKINE  144 (415)
T ss_pred             ccceehhhhhcCCcccceEEEeecCCCc----------------------eehHHHHHHHHHH-hhHHHHHHHHHHHHHh
Confidence            6799999999999999999999987744                      6788877654433 2455678999998842


Q ss_pred             --C----CccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcC
Q 024842          105 --R----NLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSL  178 (262)
Q Consensus       105 --~----~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~  178 (262)
                        |    -++++.++|          ...++.++++| ..|.++.+++..  ++-.+++-..+..+++||+.++++||+.
T Consensus       145 ~DP~g~~rcv~m~~wF----------dyrghiCivfe-llG~S~~dFlk~--N~y~~fpi~~ir~m~~QL~~sv~fLh~~  211 (415)
T KOG0671|consen  145 SDPNGKFRCVQMRDWF----------DYRGHICIVFE-LLGLSTFDFLKE--NNYIPFPIDHIRHMGYQLLESVAFLHDL  211 (415)
T ss_pred             cCCCCceEEEeeehhh----------hccCceEEEEe-ccChhHHHHhcc--CCccccchHHHHHHHHHHHHHHHHHHhc
Confidence              2    356777777          66888999999 567789998862  2345699999999999999999999999


Q ss_pred             CCCeeecCCCCCcEEEecCC--------C--------CCCceEEeeccceeecccc--CccCcccCCcccchhhhhhhhh
Q 024842          179 EPPYAHNDVKPGNILITCRK--------G--------QPPLAILMDFGSARPAQSK--FALGQRRYSCRNGLLSIVLHLS  240 (262)
Q Consensus       179 ~~~ivH~dikp~Nill~~~~--------~--------~~~~~kl~Dfg~a~~~~~~--~~~~~~~~~~~~d~~s~g~~~~  240 (262)
                      +  ++|.||||+|||+.+..        .        +...++|+|||.|......  ....|.+|.+||-+.++|+..+
T Consensus       212 k--l~HTDLKPENILfvss~~~~~~~~k~~~~~~r~~ks~~I~vIDFGsAtf~~e~hs~iVsTRHYRAPEViLgLGwS~p  289 (415)
T KOG0671|consen  212 K--LTHTDLKPENILFVSSEYFKTYNPKKKVCFIRPLKSTAIKVIDFGSATFDHEHHSTIVSTRHYRAPEVILGLGWSQP  289 (415)
T ss_pred             c--eeecCCChheEEEeccceEEEeccCCccceeccCCCcceEEEecCCcceeccCcceeeeccccCCchheeccCcCCc
Confidence            9  99999999999995432        1        1336899999999876543  3568899999999988887654


Q ss_pred             hhhhcCcccchheeheecccC
Q 024842          241 ELLSCGTVRVIQILMRELMFG  261 (262)
Q Consensus       241 e~~~~~~v~~~g~~~~~l~~G  261 (262)
                           .||||.|+++.|+-+|
T Consensus       290 -----CDvWSiGCIL~ElytG  305 (415)
T KOG0671|consen  290 -----CDVWSIGCILVELYTG  305 (415)
T ss_pred             -----cCceeeeeEEEEeecc
Confidence                 4899999999999887

>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.94  E-value=8.6e-27  Score=197.27  Aligned_cols=196  Identities=19%  Similarity=0.225  Sum_probs=162.2

Q ss_pred             CceeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHH
Q 024842           19 GDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRV   98 (262)
Q Consensus        19 ~~~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~   98 (262)
                      ..+.++..+.....+||-|.||.||.|.|..-.-                      .||+|.++.+. -..++|..|..+
T Consensus       260 DkWEmeRtdItMkhKLGGGQYGeVYeGvWKkysl----------------------TvAVKtLKEDt-MeveEFLkEAAv  316 (1157)
T KOG4278|consen  260 DKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSL----------------------TVAVKTLKEDT-MEVEEFLKEAAV  316 (1157)
T ss_pred             chhhccchheeeeeccCCCcccceeeeeeeccce----------------------eeehhhhhhcc-hhHHHHHHHHHH
Confidence            3455666777888999999999999999975432                      57788776543 335789999999


Q ss_pred             hhhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcC
Q 024842           99 SSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSL  178 (262)
Q Consensus        99 l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~  178 (262)
                      ++.+.|||+++++++|.          ....+|+++|||..|.|.+++..+..  ..++.-.++.++.||.+|++||..+
T Consensus       317 MKeikHpNLVqLLGVCT----------~EpPFYIiTEfM~yGNLLdYLRecnr--~ev~avvLlyMAtQIsSaMeYLEkk  384 (1157)
T KOG4278|consen  317 MKEIKHPNLVQLLGVCT----------HEPPFYIITEFMCYGNLLDYLRECNR--SEVPAVVLLYMATQISSAMEYLEKK  384 (1157)
T ss_pred             HHhhcCccHHHHhhhhc----------cCCCeEEEEecccCccHHHHHHHhch--hhcchhHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999983          36779999999999999999976543  3478888999999999999999998


Q ss_pred             CCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccCc-----------------cCcccCCcccchhhhhhhhhh
Q 024842          179 EPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKFA-----------------LGQRRYSCRNGLLSIVLHLSE  241 (262)
Q Consensus       179 ~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~~-----------------~~~~~~~~~~d~~s~g~~~~e  241 (262)
                      +  .|||||-+.|+|+..+.    .+|++|||+++++.....                 +.-..|+...|+|++|+.+||
T Consensus       385 n--FIHRDLAARNCLVgEnh----iVKvADFGLsRlMtgDTYTAHAGAKFPIKWTAPEsLAyNtFSiKSDVWAFGVLLWE  458 (1157)
T KOG4278|consen  385 N--FIHRDLAARNCLVGENH----IVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNTFSIKSDVWAFGVLLWE  458 (1157)
T ss_pred             h--hhhhhhhhhhccccccc----eEEeeccchhhhhcCCceecccCccCcccccCcccccccccccchhhHHHHHHHHH
Confidence            8  99999999999998766    899999999998876543                 223345666789999999999


Q ss_pred             hhhcCcccchheeh
Q 024842          242 LLSCGTVRVIQILM  255 (262)
Q Consensus       242 ~~~~~~v~~~g~~~  255 (262)
                      +.+.|.-++.|+-+
T Consensus       459 IATYGMsPYPGidl  472 (1157)
T KOG4278|consen  459 IATYGMSPYPGIDL  472 (1157)
T ss_pred             HHhcCCCCCCCccH
Confidence            99988888888754

>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

Probab=99.94  E-value=1.1e-26  Score=192.36  Aligned_cols=192  Identities=25%  Similarity=0.328  Sum_probs=143.6

Q ss_pred             ceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc---chHHHHHHHHHHHHhhhCC
Q 024842           27 RYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ---NNEQLEMVREEIRVSSLFS  103 (262)
Q Consensus        27 ~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~---~~~~~~~~~~E~~~l~~l~  103 (262)
                      .|...+.||+|+||.||+|.+..+++                      .+++|.+...   .....+.+.+|+.+++.++
T Consensus        22 ~~~~~~~lg~g~~g~v~~~~~~~~~~----------------------~v~ik~~~~~~~~~~~~~~~~~~E~~~l~~l~   79 (313)
T cd06633          22 IFVGLHEIGHGSFGAVYFATNSHTNE----------------------VVAVKKMSYSGKQTNEKWQDIIKEVKFLQQLK   79 (313)
T ss_pred             HhhcceeeccCCCeEEEEEEECCCCc----------------------EEEEEEEeccccCchHHHHHHHHHHHHHHhCC
Confidence            47778889999999999999876654                      5777766432   2334467888999999999


Q ss_pred             CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCee
Q 024842          104 HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYA  183 (262)
Q Consensus       104 h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~iv  183 (262)
                      |||++++++.+.          .....|++|||+. +++.+++..   ...++++.+++.++.|++.||.|||+.+  ++
T Consensus        80 h~~iv~~~~~~~----------~~~~~~lv~e~~~-~~l~~~l~~---~~~~l~~~~~~~~~~qi~~al~~LH~~g--i~  143 (313)
T cd06633          80 HPNTIEYKGCYL----------KEHTAWLVMEYCL-GSASDLLEV---HKKPLQEVEIAAITHGALQGLAYLHSHN--MI  143 (313)
T ss_pred             CCCCccEEEEEE----------eCCEEEEEEecCC-CCHHHHHHh---cCCCCCHHHHHHHHHHHHHHHHHHHHCC--ee
Confidence            999999999873          3567899999985 567666542   3456899999999999999999999998  99


Q ss_pred             ecCCCCCcEEEecCCCCCCceEEeeccceeecccc-CccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecccCC
Q 024842          184 HNDVKPGNILITCRKGQPPLAILMDFGSARPAQSK-FALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMFGR  262 (262)
Q Consensus       184 H~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~-~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~G~  262 (262)
                      |+||+|+||+++.++    .++|+|||++...... ...++..|.+||.+......  ......|+|++|+++++|++|+
T Consensus       144 H~dl~p~nili~~~~----~~kL~dfg~~~~~~~~~~~~~~~~y~aPE~~~~~~~~--~~~~~sDv~slGvil~el~~g~  217 (313)
T cd06633         144 HRDIKAGNILLTEPG----QVKLADFGSASKSSPANSFVGTPYWMAPEVILAMDEG--QYDGKVDVWSLGITCIELAERK  217 (313)
T ss_pred             cCCCChhhEEECCCC----CEEEeecCCCcccCCCCCccccccccChhhccccCCC--CCCchhhHHHHHHHHHHHHhCC
Confidence            999999999998766    6999999998654322 22455566666654321100  1112367788888777777764

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co

>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases

Probab=99.94  E-value=3.1e-26  Score=183.68  Aligned_cols=143  Identities=22%  Similarity=0.338  Sum_probs=119.8

Q ss_pred             EEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccch-HHHHHHHHHHHHhhhCCCCCccch
Q 024842           32 RQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNN-EQLEMVREEIRVSSLFSHRNLLPL  110 (262)
Q Consensus        32 ~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~  110 (262)
                      ++||+|++|.||++.+.. ++                      .+++|....... .....+..|+.+++.++|+||+++
T Consensus         1 ~~lg~g~~g~v~~~~~~~-~~----------------------~v~~K~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~   57 (251)
T cd05041           1 EKIGKGNFGDVYKGVLKG-NT----------------------EVAVKTCRSTLPPDLKRKFLQEAEILKQYDHPNIVKL   57 (251)
T ss_pred             CccccCCCceEEEEEEeC-CC----------------------cEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCeEEE
Confidence            368999999999999764 33                      577777665433 345678899999999999999999


Q ss_pred             hhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeeecCCCCC
Q 024842          111 LDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPG  190 (262)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~dikp~  190 (262)
                      ++.+          ......+++|+++.+++|.+++..   ....+++..+..++.+++.+|.|||+++  ++|+||+|+
T Consensus        58 ~~~~----------~~~~~~~~v~e~~~~~~l~~~l~~---~~~~~~~~~~~~~~~~~~~~l~~lH~~~--i~h~di~p~  122 (251)
T cd05041          58 IGVC----------VQKQPIYIVMELVPGGSLLTFLRK---KKNRLTVKKLLQMSLDAAAGMEYLESKN--CIHRDLAAR  122 (251)
T ss_pred             EEEE----------ecCCCeEEEEEcCCCCcHHHHHHh---cCCCCCHHHHHHHHHHHHHHHHHHHhCC--EehhhcCcc
Confidence            9877          335678999999999999988752   2345889999999999999999999998  999999999


Q ss_pred             cEEEecCCCCCCceEEeeccceeecc
Q 024842          191 NILITCRKGQPPLAILMDFGSARPAQ  216 (262)
Q Consensus       191 Nill~~~~~~~~~~kl~Dfg~a~~~~  216 (262)
                      ||+++.++    .++|+|||++....
T Consensus       123 nili~~~~----~~~l~d~g~~~~~~  144 (251)
T cd05041         123 NCLVGENN----VLKISDFGMSREEE  144 (251)
T ss_pred             eEEEcCCC----cEEEeecccccccc
Confidence            99998776    69999999987554

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k

>KOG1345 consensus Serine/threonine kinase [Signal transduction mechanisms]

Probab=99.94  E-value=4.3e-27  Score=180.99  Aligned_cols=197  Identities=20%  Similarity=0.244  Sum_probs=152.1

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCC-
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFS-  103 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~-  103 (262)
                      .+.|.+.+.+|+|.||.+-+++++.++.                      .+++|.+...-.. ..+|.+|...--.|. 
T Consensus        23 ~d~y~I~k~lgeG~FgkIlL~eHr~s~t----------------------~ivlKavp~p~tt-~~dF~rEfhY~~~Ls~   79 (378)
T KOG1345|consen   23 EDVYTINKQLGEGRFGKILLAEHRQSKT----------------------RIVLKAVPRPQTT-QADFVREFHYSFFLSP   79 (378)
T ss_pred             hhhhhHHHHhcccceeeEEeeeccCCce----------------------EEEeeccCcchhh-HHHHHHHhccceeecc
Confidence            4689999999999999999999987655                      6777766555333 477888988876664 


Q ss_pred             CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCee
Q 024842          104 HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYA  183 (262)
Q Consensus       104 h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~iv  183 (262)
                      |.||+..++..+         +..+..++++||++.|+|.+-+.     ...+.|.....++.|+++|+.|+|+.+  +|
T Consensus        80 H~hIi~tY~vaF---------qt~d~YvF~qE~aP~gdL~snv~-----~~GigE~~~K~v~~ql~SAi~fMHskn--lV  143 (378)
T KOG1345|consen   80 HQHIIDTYEVAF---------QTSDAYVFVQEFAPRGDLRSNVE-----AAGIGEANTKKVFAQLLSAIEFMHSKN--LV  143 (378)
T ss_pred             chhhhHHHHHHh---------hcCceEEEeeccCccchhhhhcC-----cccccHHHHHHHHHHHHHHHHHhhccc--hh
Confidence            899999998875         55677889999999999988664     344899999999999999999999999  99


Q ss_pred             ecCCCCCcEEEecCCCCCCceEEeeccceeeccccC--ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecccC
Q 024842          184 HNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF--ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMFG  261 (262)
Q Consensus       184 H~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~--~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~G  261 (262)
                      |||||.+|||+-..+..  .+||+|||.......-.  ......|.+|+..--..--........|+|.+|++++.+++|
T Consensus       144 HRdlK~eNiLif~~df~--rvKlcDFG~t~k~g~tV~~~~~~~~y~~pe~~~~~~ne~~~~~ps~D~WqfGIi~f~cltG  221 (378)
T KOG1345|consen  144 HRDLKAENILIFDADFY--RVKLCDFGLTRKVGTTVKYLEYVNNYHAPELCDTVVNEKLVVNPSTDIWQFGIIFFYCLTG  221 (378)
T ss_pred             hcccccceEEEecCCcc--EEEeeecccccccCceehhhhhhcccCCcHHHhhccccceEecccccchheeeeeeeeecC
Confidence            99999999999765444  79999999987654322  223345555554322211122233347999999999999999


Q ss_pred             C
Q 024842          262 R  262 (262)
Q Consensus       262 ~  262 (262)
                      +
T Consensus       222 ~  222 (378)
T KOG1345|consen  222 K  222 (378)
T ss_pred             C
Confidence            5

>cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta

Probab=99.94  E-value=7.5e-27  Score=194.67  Aligned_cols=188  Identities=20%  Similarity=0.241  Sum_probs=136.1

Q ss_pred             EEeecc--cceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc--chHHHHHHHHHHHHhhhCCCCCc
Q 024842           32 RQLGEG--GFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ--NNEQLEMVREEIRVSSLFSHRNL  107 (262)
Q Consensus        32 ~~ig~G--~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~--~~~~~~~~~~E~~~l~~l~h~~i  107 (262)
                      ..||+|  +|+.||++.+..+++                      .|++|.....  .....+.+.+|+.+++.++||||
T Consensus         4 ~~ig~g~~~~~~v~~a~~~~~~~----------------------~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~h~ni   61 (328)
T cd08226           4 VEIGRGFCNLTSVYLARHTPTGT----------------------LVTVRITDLENCTEEHLKALQNEVVLSHFFRHPNI   61 (328)
T ss_pred             HHhCCcccCceeEEEEEEcCCCc----------------------EEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCc
Confidence            456666  999999999876655                      5677765543  23345778899999999999999


Q ss_pred             cchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeeecCC
Q 024842          108 LPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDV  187 (262)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~di  187 (262)
                      +++++++          ......++++|++.++++.+++....  ...+++..+..++.|++.||+|||+++  ++||||
T Consensus        62 v~~~~~~----------~~~~~~~~v~e~~~~~~l~~~l~~~~--~~~~~~~~~~~~~~qi~~aL~~lH~~~--ivHrDl  127 (328)
T cd08226          62 MTSWTVF----------TTGSWLWVISPFMAYGSANSLLKTYF--PEGMSEALIGNILFGALRGLNYLHQNG--YIHRNI  127 (328)
T ss_pred             ceEeeeE----------ecCCceEEEEecccCCCHHHHHHhhc--ccCCCHHHHHHHHHHHHHHHHHHHhCC--eecCCC
Confidence            9999988          33667899999999999998876432  234899999999999999999999988  999999


Q ss_pred             CCCcEEEecCCCCCCceEEeeccceeeccccC------------ccCcccCCcccchhhhhhhhhhhhhcCcccchheeh
Q 024842          188 KPGNILITCRKGQPPLAILMDFGSARPAQSKF------------ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILM  255 (262)
Q Consensus       188 kp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~------------~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~  255 (262)
                      ||+||+++.++    .++++||+.+.......            ..+...|.+||.+..-   ........|+|++|+++
T Consensus       128 kp~Nill~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~---~~~~~~~~DiwslG~~l  200 (328)
T cd08226         128 KASHILISGDG----LVSLSGLSHLYSLVRNGQKAKVVYDFPQFSTSVLPWLSPELLRQD---LYGYNVKSDIYSVGITA  200 (328)
T ss_pred             CHHHEEEeCCC----cEEEechHHHhhhhccCccccccccccccccCccCccChhhhcCC---CCCCCchhhHHHHHHHH
Confidence            99999998776    69999997554322111            0122234555443210   00011235777777777


Q ss_pred             eecccCC
Q 024842          256 RELMFGR  262 (262)
Q Consensus       256 ~~l~~G~  262 (262)
                      ++|++|+
T Consensus       201 ~el~~g~  207 (328)
T cd08226         201 CELATGR  207 (328)
T ss_pred             HHHHhCC
Confidence            7777764

Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig

>cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

Probab=99.94  E-value=2.9e-26  Score=187.36  Aligned_cols=194  Identities=24%  Similarity=0.279  Sum_probs=137.6

Q ss_pred             eEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc--hHHHHHHHHHHHHhhhC---
Q 024842           28 YRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN--NEQLEMVREEIRVSSLF---  102 (262)
Q Consensus        28 y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~--~~~~~~~~~E~~~l~~l---  102 (262)
                      |++.+.||+|+||.||+|.+..+++                      .+++|.+....  ......+.+|+.+++.+   
T Consensus         1 y~~~~~l~~g~~~~v~~~~~~~~~~----------------------~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~   58 (287)
T cd07838           1 YEELAEIGEGAYGTVYKARDLNTGR----------------------FVALKKVRVPLSEEGIPLSTLREIALLKQLESF   58 (287)
T ss_pred             CeEEEEecccCceEEEEEEECCCCC----------------------EEEEEEeccccccchhhhhHHHHHHHHHHhhcc
Confidence            6889999999999999999876544                      57777665332  22234455677766555   


Q ss_pred             CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCe
Q 024842          103 SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPY  182 (262)
Q Consensus       103 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~i  182 (262)
                      +|+|++++++.+...     ........+++|+++. ++|.+++....  ...+++..++.++.|++.||.|||+.+  +
T Consensus        59 ~h~~i~~~~~~~~~~-----~~~~~~~~~l~~e~~~-~~l~~~l~~~~--~~~l~~~~~~~~~~~i~~al~~LH~~~--i  128 (287)
T cd07838          59 EHPNIVRLLDVCHGP-----RTDRELKLTLVFEHVD-QDLATYLSKCP--KPGLPPETIKDLMRQLLRGVDFLHSHR--I  128 (287)
T ss_pred             CCCCcceEEEEEeec-----cCCCCceeEEEehhcc-cCHHHHHHHcc--CCCCCHHHHHHHHHHHHHHHHHHHHCC--e
Confidence            699999999987421     0011223889999876 47887775322  235899999999999999999999988  9


Q ss_pred             eecCCCCCcEEEecCCCCCCceEEeeccceeeccccC----ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheec
Q 024842          183 AHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMREL  258 (262)
Q Consensus       183 vH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l  258 (262)
                      +|+||+|+||+++.++    .++|+|||++..+....    ..++..|.+||.+...     ......|+|++|+++++|
T Consensus       129 ~h~~l~~~nili~~~~----~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~PE~~~~~-----~~~~~~Di~s~G~~l~~l  199 (287)
T cd07838         129 VHRDLKPQNILVTSDG----QVKIADFGLARIYSFEMALTSVVVTLWYRAPEVLLQS-----SYATPVDMWSVGCIFAEL  199 (287)
T ss_pred             eeccCChhhEEEccCC----CEEEeccCcceeccCCcccccccccccccChHHhccC-----CCCCcchhhhHHHHHHHH
Confidence            9999999999998776    79999999998764332    1234456666543221     112246777777777777


Q ss_pred             ccCC
Q 024842          259 MFGR  262 (262)
Q Consensus       259 ~~G~  262 (262)
                      ++|+
T Consensus       200 ~~~~  203 (287)
T cd07838         200 FRRR  203 (287)
T ss_pred             HhCC
Confidence            6653

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both

>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein

Probab=99.94  E-value=3.7e-26  Score=189.31  Aligned_cols=168  Identities=21%  Similarity=0.253  Sum_probs=123.9

Q ss_pred             cceeehhhhcc--chHHHHHHHHHHHHhhhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhh
Q 024842           74 GTYAMKKVLIQ--NNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQT  151 (262)
Q Consensus        74 ~~~~ik~~~~~--~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~  151 (262)
                      ..+|+|++...  .....+.+..|+.+++.++|+||+++++.+.          .....+++|||+.+++|.+++.... 
T Consensus        26 ~~~avK~~~~~~~~~~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~----------~~~~~~~~~e~~~~~~l~~~l~~~~-   94 (314)
T cd08216          26 TLVAVKKINLDSCSKEDLKLLQQEIITSRQLQHPNILPYVTSFI----------VDSELYVVSPLMAYGSCEDLLKTHF-   94 (314)
T ss_pred             CEEEEEEEeccccchhHHHHHHHHHHHHHhcCCcchhhhhheee----------cCCeEEEEEeccCCCCHHHHHHHhc-
Confidence            36788876544  3445577899999999999999999999873          3567899999999999999886332 


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC------------
Q 024842          152 KKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF------------  219 (262)
Q Consensus       152 ~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~------------  219 (262)
                       ...+++..+..++.|++.||.|||+.+  |+|+||||+||+++.++    .++|+||+.+.......            
T Consensus        95 -~~~~~~~~~~~~~~~l~~~L~~LH~~~--ivH~dlk~~Nili~~~~----~~kl~d~~~~~~~~~~~~~~~~~~~~~~~  167 (314)
T cd08216          95 -PEGLPELAIAFILKDVLNALDYIHSKG--FIHRSVKASHILLSGDG----KVVLSGLRYSVSMIKHGKRQRVVHDFPKS  167 (314)
T ss_pred             -ccCCCHHHHHHHHHHHHHHHHHHHHCC--eecCCCCcceEEEecCC----ceEEecCccceeecccccccccccccccc
Confidence             234889999999999999999999998  99999999999998776    69999999887543211            


Q ss_pred             ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecccCC
Q 024842          220 ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMFGR  262 (262)
Q Consensus       220 ~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~G~  262 (262)
                      ..++..|.+||.+..-.   ......+|+|++|+++++|++|+
T Consensus       168 ~~~~~~y~aPE~~~~~~---~~~~~~~Diws~G~il~el~~g~  207 (314)
T cd08216         168 SVKNLPWLSPEVLQQNL---QGYNEKSDIYSVGITACELANGH  207 (314)
T ss_pred             ccccccccCHHHhcCCC---CCCCcchhHHHHHHHHHHHHhCC
Confidence            12233344444332100   00112367777777777777663

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc

>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.94  E-value=1.2e-26  Score=183.70  Aligned_cols=201  Identities=22%  Similarity=0.269  Sum_probs=157.2

Q ss_pred             CCCCCceeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhc---cchHHHHH
Q 024842           15 VNGGGDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLI---QNNEQLEM   91 (262)
Q Consensus        15 ~~~~~~~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~---~~~~~~~~   91 (262)
                      ........+.-++|.++..||+|+|+.|-+++...+.+                      .||+|+++.   +..++..=
T Consensus       239 ~g~~~~~~l~l~df~ll~vigrgsyakvl~~~~~~t~q----------------------iyamkvvkkel~nddedidw  296 (593)
T KOG0695|consen  239 DGIKISQGLGLQDFDLLRVIGRGSYAKVLLVRLKKTDQ----------------------IYAMKVVKKELVNDDEDIDW  296 (593)
T ss_pred             cccccccccccccceeeeeecCcchhhhhheehcccce----------------------eeehhhHHHHhcCCcccchh
Confidence            33344445667899999999999999999999887755                      566665543   23333344


Q ss_pred             HHHHHHHhhhC-CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHH
Q 024842           92 VREEIRVSSLF-SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICA  170 (262)
Q Consensus        92 ~~~E~~~l~~l-~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~  170 (262)
                      ...|..+.... +||.++-+..+|          ++..+++++.||..+|+|.-.+.    ++..++++.+..+...|+.
T Consensus       297 vqtek~vfe~asn~pflvglhscf----------qtesrlffvieyv~ggdlmfhmq----rqrklpeeharfys~ei~l  362 (593)
T KOG0695|consen  297 VQTEKHVFEQASNNPFLVGLHSCF----------QTESRLFFVIEYVNGGDLMFHMQ----RQRKLPEEHARFYSAEICL  362 (593)
T ss_pred             HHhhHHHHHhccCCCeEEehhhhh----------cccceEEEEEEEecCcceeeehh----hhhcCcHHHhhhhhHHHHH
Confidence            45666666555 699999999998          56888999999999999976665    4445999999999999999


Q ss_pred             HHHHHHcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeecc-c----cCccCcccCCcccchhhhhhhhhhhhhc
Q 024842          171 GLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQ-S----KFALGQRRYSCRNGLLSIVLHLSELLSC  245 (262)
Q Consensus       171 ~l~~lH~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~-~----~~~~~~~~~~~~~d~~s~g~~~~e~~~~  245 (262)
                      ||.|||+.|  |++||||.+|+|++.++    .+||+|+|.++.-- +    ....+++.|-+||-+..-.+-+.     
T Consensus       363 al~flh~rg--iiyrdlkldnvlldaeg----hikltdygmcke~l~~gd~tstfcgtpnyiapeilrgeeygfs-----  431 (593)
T KOG0695|consen  363 ALNFLHERG--IIYRDLKLDNVLLDAEG----HIKLTDYGMCKEGLGPGDTTSTFCGTPNYIAPEILRGEEYGFS-----  431 (593)
T ss_pred             HHHHHhhcC--eeeeeccccceEEccCC----ceeecccchhhcCCCCCcccccccCCCcccchhhhcccccCce-----
Confidence            999999999  99999999999999888    79999999998632 2    22357888888776644332222     


Q ss_pred             CcccchheeheecccCC
Q 024842          246 GTVRVIQILMRELMFGR  262 (262)
Q Consensus       246 ~~v~~~g~~~~~l~~G~  262 (262)
                      -|.|++|++|+||+.||
T Consensus       432 vdwwalgvlmfemmagr  448 (593)
T KOG0695|consen  432 VDWWALGVLMFEMMAGR  448 (593)
T ss_pred             ehHHHHHHHHHHHHcCC
Confidence            47899999999999987

>KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.94  E-value=1.4e-27  Score=179.52  Aligned_cols=201  Identities=18%  Similarity=0.235  Sum_probs=153.8

Q ss_pred             hhccCCCCCceeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHH
Q 024842           11 LYDSVNGGGDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLE   90 (262)
Q Consensus        11 ~~~~~~~~~~~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~   90 (262)
                      +++..+ ....|=..++|++.+++|+|.+++||.|....+++                      .+++|.++.-.   .+
T Consensus        24 YWdYE~-~~i~wg~~ddYeivrk~GRGKYSEVFeg~~~~~~e----------------------K~ViKiLKPVk---kk   77 (338)
T KOG0668|consen   24 YWDYES-LVIDWGNQDDYEIVRKVGRGKYSEVFEGINITNNE----------------------KCVIKILKPVK---KK   77 (338)
T ss_pred             hcchhh-eeeeccccchHHHHHHHcCccHhhHhcccccCCCc----------------------eEEEeeechHH---HH
Confidence            344444 23445567899999999999999999999877655                      45666554332   35


Q ss_pred             HHHHHHHHhhhCC-CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHH
Q 024842           91 MVREEIRVSSLFS-HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQIC  169 (262)
Q Consensus        91 ~~~~E~~~l~~l~-h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~  169 (262)
                      .+.+|+.+|+.|. ||||+++++...        +......-+++|+..+.+...+..       .++.-.+..++.+++
T Consensus        78 KIkREikIL~nL~gg~NIi~L~DiV~--------Dp~SktpaLiFE~v~n~Dfk~ly~-------tl~d~dIryY~~elL  142 (338)
T KOG0668|consen   78 KIKREIKILQNLRGGPNIIKLLDIVK--------DPESKTPSLIFEYVNNTDFKQLYP-------TLTDYDIRYYIYELL  142 (338)
T ss_pred             HHHHHHHHHHhccCCCCeeehhhhhc--------CccccCchhHhhhhccccHHHHhh-------hhchhhHHHHHHHHH
Confidence            6789999999996 999999999874        234455678999988876655432       277788999999999


Q ss_pred             HHHHHHHcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccCcc----Cc------------ccCCcccchh
Q 024842          170 AGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKFAL----GQ------------RRYSCRNGLL  233 (262)
Q Consensus       170 ~~l~~lH~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~~~----~~------------~~~~~~~d~~  233 (262)
                      .||.|+|+.|  |.|||+||.|++++....   .++|+|+|+|.++.+....    .+            ..|.-.-|+|
T Consensus       143 kALdyCHS~G--ImHRDVKPhNvmIdh~~r---kLrlIDWGLAEFYHp~~eYnVRVASRyfKGPELLVdy~~YDYSLD~W  217 (338)
T KOG0668|consen  143 KALDYCHSMG--IMHRDVKPHNVMIDHELR---KLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDYQMYDYSLDMW  217 (338)
T ss_pred             HHHhHHHhcC--cccccCCcceeeechhhc---eeeeeecchHhhcCCCceeeeeeehhhcCCchheeechhccccHHHH
Confidence            9999999999  999999999999985443   6999999999987655421    11            1233345899


Q ss_pred             hhhhhhhhhhhcCcccchheehee
Q 024842          234 SIVLHLSELLSCGTVRVIQILMRE  257 (262)
Q Consensus       234 s~g~~~~e~~~~~~v~~~g~~~~~  257 (262)
                      |+||++..+..+...|+.|-..++
T Consensus       218 S~GcmlA~miFrkepFFhG~dN~D  241 (338)
T KOG0668|consen  218 SLGCMLASMIFRKEPFFHGHDNYD  241 (338)
T ss_pred             HHHHHHHHHHhccCcccCCCCCHH
Confidence            999999999888888888765543

>cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

Probab=99.94  E-value=2.6e-26  Score=182.78  Aligned_cols=174  Identities=18%  Similarity=0.141  Sum_probs=128.5

Q ss_pred             ccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCCCCCccchhhhhHH
Q 024842           37 GGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAII  116 (262)
Q Consensus        37 G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~  116 (262)
                      |.+|.||++++..+++                      .+++|++.....     ...|...+....|||++++++.+  
T Consensus         4 g~~~~v~~~~~~~~~~----------------------~~~~K~i~~~~~-----~~~~~~~~~~~~~~~i~~~~~~~--   54 (237)
T cd05576           4 GVIDKVLLVMDTRTQQ----------------------TFILKGLRKSSE-----YSRERLTIIPHCVPNMVCLHKYI--   54 (237)
T ss_pred             cccceEEEEEEccCCc----------------------EEEEEeecchhh-----hhhHHHHHHhcCCCceeehhhhe--
Confidence            8899999999987765                      577777654421     22344444556799999999987  


Q ss_pred             HhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeeecCCCCCcEEEec
Q 024842          117 AVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITC  196 (262)
Q Consensus       117 ~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~dikp~Nill~~  196 (262)
                              ......+++|||+.+++|.+++.    ....+++..+..++.|++.||.|||+.+  ++|+||||+||+++.
T Consensus        55 --------~~~~~~~lv~e~~~~~~L~~~l~----~~~~l~~~~~~~~~~ql~~~l~~lH~~~--i~H~dlkp~Nil~~~  120 (237)
T cd05576          55 --------VSEDSVFLVLQHAEGGKLWSHIS----KFLNIPEECVKRWAAEMVVALDALHREG--IVCRDLNPNNILLDD  120 (237)
T ss_pred             --------ecCCeEEEEEecCCCCCHHHHHH----HhcCCCHHHHHHHHHHHHHHHHHHHhCC--eeccCCCHHHEEEcC
Confidence                    33567899999999999999876    3345899999999999999999999988  999999999999987


Q ss_pred             CCCCCCceEEeeccceeeccccC--ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecccCC
Q 024842          197 RKGQPPLAILMDFGSARPAQSKF--ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMFGR  262 (262)
Q Consensus       197 ~~~~~~~~kl~Dfg~a~~~~~~~--~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~G~  262 (262)
                      ++    .++|+|||.+.......  ...+..|.+||....-.     .....|+|++|+++|+|++|+
T Consensus       121 ~~----~~~l~df~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-----~~~~~DvwslG~il~el~~g~  179 (237)
T cd05576         121 RG----HIQLTYFSRWSEVEDSCDGEAVENMYCAPEVGGISE-----ETEACDWWSLGAILFELLTGK  179 (237)
T ss_pred             CC----CEEEecccchhccccccccCCcCccccCCcccCCCC-----CCchhhHHHHHHHHHHHHHCc
Confidence            76    69999999876544321  22334466665432111     112357777777777777664

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha

>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]

Probab=99.94  E-value=7e-27  Score=202.78  Aligned_cols=196  Identities=22%  Similarity=0.298  Sum_probs=161.1

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc-chHHHHHHHHHHHHhhhCC
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ-NNEQLEMVREEIRVSSLFS  103 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~-~~~~~~~~~~E~~~l~~l~  103 (262)
                      .-..+..++||.|.||+||+|.|.-.++.+.+                  +|++|.+... ..+...++..|+..+..++
T Consensus       695 Etelkk~kvLGsgAfGtV~kGiw~Pege~vKi------------------pVaiKvl~~~t~~~~s~e~LdeAl~masld  756 (1177)
T KOG1025|consen  695 ETELKKDKVLGSGAFGTVYKGIWIPEGENVKI------------------PVAIKVLIEFTSPKASIELLDEALRMASLD  756 (1177)
T ss_pred             hhhhhhhceeccccceeEEeeeEecCCceecc------------------eeEEEEeeccCCchhhHHHHHHHHHHhcCC
Confidence            34566788999999999999999888776655                  4788866543 4444578899999999999


Q ss_pred             CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCee
Q 024842          104 HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYA  183 (262)
Q Consensus       104 h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~iv  183 (262)
                      |||++++++++.           .....+++++++.|+|.+++..   .+..+.....+.+..||++|+.|||.+.  ++
T Consensus       757 Hpnl~RLLgvc~-----------~s~~qlvtq~mP~G~LlDyvr~---hr~~igsq~lLnw~~QIAkgM~YLe~qr--lV  820 (1177)
T KOG1025|consen  757 HPNLLRLLGVCM-----------LSTLQLVTQLMPLGCLLDYVRE---HRDNIGSQDLLNWCYQIAKGMKYLEEQR--LV  820 (1177)
T ss_pred             CchHHHHhhhcc-----------cchHHHHHHhcccchHHHHHHH---hhccccHHHHHHHHHHHHHHHHHHHhcc--hh
Confidence            999999999986           2337789999999999999875   4556888999999999999999999988  99


Q ss_pred             ecCCCCCcEEEecCCCCCCceEEeeccceeeccccCc------------------cCcccCCcccchhhhhhhhhhhhhc
Q 024842          184 HNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKFA------------------LGQRRYSCRNGLLSIVLHLSELLSC  245 (262)
Q Consensus       184 H~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~~------------------~~~~~~~~~~d~~s~g~~~~e~~~~  245 (262)
                      ||||-+.|+|+...+    .+|+.|||+++...+...                  .....|+..+|+|++|++.||+++.
T Consensus       821 HrdLaaRNVLVksP~----hvkitdfgla~ll~~d~~ey~~~~gK~pikwmale~i~~~~~thqSDVWsfGVtiWElmTF  896 (1177)
T KOG1025|consen  821 HRDLAARNVLVKSPN----HVKITDFGLAKLLAPDEKEYSAPGGKVPIKWMALESIRIRKYTHQSDVWSFGVTIWELMTF  896 (1177)
T ss_pred             hhhhhhhheeecCCC----eEEEEecchhhccCcccccccccccccCcHHHHHHHhhccCCCchhhhhhhhhhHHHHHhc
Confidence            999999999997665    799999999997654331                  3445678888888888888888888


Q ss_pred             Ccccchheeheec
Q 024842          246 GTVRVIQILMREL  258 (262)
Q Consensus       246 ~~v~~~g~~~~~l  258 (262)
                      |.-+..|+-+-|+
T Consensus       897 Ga~Py~gi~~~eI  909 (1177)
T KOG1025|consen  897 GAKPYDGIPAEEI  909 (1177)
T ss_pred             CCCccCCCCHHHh
Confidence            8888777765543

>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]

Probab=99.93  E-value=3e-26  Score=190.17  Aligned_cols=193  Identities=22%  Similarity=0.233  Sum_probs=148.5

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCC-
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFS-  103 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~-  103 (262)
                      ..+|.+....|+|-|++|..|.+..-+.                      .||||++..++.- .+.=+.|+++|++|+ 
T Consensus       431 D~RY~V~~~~GkGvFs~Vvra~D~~r~~----------------------~vAiKIIRnNE~M-~KtGl~EleiLkKL~~  487 (752)
T KOG0670|consen  431 DSRYEVQGYTGKGVFSTVVRARDQARGQ----------------------EVAIKIIRNNEVM-HKTGLKELEILKKLND  487 (752)
T ss_pred             cceeEEEeccccceeeeeeeccccCCCC----------------------eeEEEEeecchHH-hhhhhHHHHHHHHhhc
Confidence            5899999999999999999999986544                      6888888765433 344567999999995 


Q ss_pred             -----CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcC
Q 024842          104 -----HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSL  178 (262)
Q Consensus       104 -----h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~  178 (262)
                           --|+++++.+|.          ...++++|+| .....|.++++.+.. +..+....+..++.||+.||.+|..+
T Consensus       488 AD~Edk~Hclrl~r~F~----------hknHLClVFE-~LslNLRevLKKyG~-nvGL~ikaVRsYaqQLflALklLK~c  555 (752)
T KOG0670|consen  488 ADPEDKFHCLRLFRHFK----------HKNHLCLVFE-PLSLNLREVLKKYGR-NVGLHIKAVRSYAQQLFLALKLLKKC  555 (752)
T ss_pred             cCchhhhHHHHHHHHhh----------hcceeEEEeh-hhhchHHHHHHHhCc-ccceeehHHHHHHHHHHHHHHHHHhc
Confidence                 348899999884          3678999999 456788888876543 34488889999999999999999999


Q ss_pred             CCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC--------------ccCcccCCcccchhhhhhhhhhhhh
Q 024842          179 EPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF--------------ALGQRRYSCRNGLLSIVLHLSELLS  244 (262)
Q Consensus       179 ~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~--------------~~~~~~~~~~~d~~s~g~~~~e~~~  244 (262)
                      +  |+|.||||+|||+....+   .+||||||.|.....+.              ..-...|..|.|+||.||+++|+++
T Consensus       556 ~--vlHaDIKPDNiLVNE~k~---iLKLCDfGSA~~~~eneitPYLVSRFYRaPEIiLG~~yd~~iD~WSvgctLYElYt  630 (752)
T KOG0670|consen  556 G--VLHADIKPDNILVNESKN---ILKLCDFGSASFASENEITPYLVSRFYRAPEIILGLPYDYPIDTWSVGCTLYELYT  630 (752)
T ss_pred             C--eeecccCccceEeccCcc---eeeeccCccccccccccccHHHHHHhccCcceeecCcccCCccceeeceeeEEeec
Confidence            9  999999999999975544   79999999998766543              2334455666666666666666665


Q ss_pred             cCcccchheeheec
Q 024842          245 CGTVRVIQILMREL  258 (262)
Q Consensus       245 ~~~v~~~g~~~~~l  258 (262)
                       |.|.+.|-+.-.|
T Consensus       631 -GkIlFpG~TNN~M  643 (752)
T KOG0670|consen  631 -GKILFPGRTNNQM  643 (752)
T ss_pred             -cceecCCCCcHHH
Confidence             5565666554443

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=99.93  E-value=1.1e-25  Score=202.94  Aligned_cols=164  Identities=20%  Similarity=0.309  Sum_probs=134.2

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc---chHHHHHHHHHHHHhhh
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ---NNEQLEMVREEIRVSSL  101 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~---~~~~~~~~~~E~~~l~~  101 (262)
                      .++|++.+.||+|+||.||+|.+..+++                      .||+|++...   .......+..|+.+++.
T Consensus         3 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~----------------------~vAiKvi~~~~~~~~~~~~~~~~E~~~l~~   60 (669)
T cd05610           3 IEEFVIVKPISRGAFGKVYLGRKKNNSK----------------------LYAVKVVKKADMINKNMVHQVQAERDALAL   60 (669)
T ss_pred             cCCEEEEEEEecCCCeEEEEEEECCCCc----------------------EEEEEEEehhhccCHHHHHHHHHHHHHHHh
Confidence            3689999999999999999999886655                      5677765432   23445678889999999


Q ss_pred             CCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCC
Q 024842          102 FSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPP  181 (262)
Q Consensus       102 l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~  181 (262)
                      ++||||++++..+          ......|++|||+.+++|.+++.    ....+++..++.++.||+.||.|||+++  
T Consensus        61 l~hp~Iv~~~~~~----------~~~~~~~lVmEy~~g~~L~~li~----~~~~l~~~~~~~i~~qil~aL~yLH~~g--  124 (669)
T cd05610          61 SKSPFIVHLYYSL----------QSANNVYLVMEYLIGGDVKSLLH----IYGYFDEEMAVKYISEVALALDYLHRHG--  124 (669)
T ss_pred             cCCCCcCeEEEEE----------EECCEEEEEEeCCCCCCHHHHHH----hcCCCCHHHHHHHHHHHHHHHHHHHhCC--
Confidence            9999999998776          33567999999999999999886    3445899999999999999999999988  


Q ss_pred             eeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-----ccCcccCCccc
Q 024842          182 YAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-----ALGQRRYSCRN  230 (262)
Q Consensus       182 ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~~~~~~~~  230 (262)
                      |+||||||+|||++.++    .++|+|||++.......     ..+++.|.+|+
T Consensus       125 IiHrDLKP~NILl~~~g----~vkL~DFGls~~~~~~~~~~~~~~~t~~~~~pe  174 (669)
T cd05610         125 IIHRDLKPDNMLISNEG----HIKLTDFGLSKVTLNRELNMMDILTTPSMAKPK  174 (669)
T ss_pred             EEeCCccHHHEEEcCCC----CEEEEeCCCCccccCCcccccccccCccccCcc
Confidence            99999999999998766    69999999998654322     24555566654

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=99.93  E-value=2.7e-26  Score=194.73  Aligned_cols=187  Identities=24%  Similarity=0.303  Sum_probs=145.9

Q ss_pred             cCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhC-
Q 024842           24 NENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLF-  102 (262)
Q Consensus        24 ~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l-  102 (262)
                      ..+.|.+...+|.|+|+.|-.+.+..+.+                      .+++|++....    .+..+|+.++... 
T Consensus       320 ~~~~y~~~~~~~~gs~s~~~~~~~~~t~~----------------------~~~vkii~~~~----~~~~~e~~~~~~~~  373 (612)
T KOG0603|consen  320 FTESYEFREELGEGSFSAVKYCESSPTDQ----------------------EPAVKIISKRA----DDNQDEIPISLLVR  373 (612)
T ss_pred             cchhhccccccCCCCccceeeeecccccc----------------------chhheeccccc----cccccccchhhhhc
Confidence            36789999999999999999999877655                      56777665442    2233566555444 


Q ss_pred             CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCe
Q 024842          103 SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPY  182 (262)
Q Consensus       103 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~i  182 (262)
                      +||||++..+.+          ......|++||.+.++-+.+.+.    ... ....++..|+.+|+.|+.|||++|  +
T Consensus       374 ~h~niv~~~~v~----------~~~~~~~~v~e~l~g~ell~ri~----~~~-~~~~e~~~w~~~lv~Av~~LH~~g--v  436 (612)
T KOG0603|consen  374 DHPNIVKSHDVY----------EDGKEIYLVMELLDGGELLRRIR----SKP-EFCSEASQWAAELVSAVDYLHEQG--V  436 (612)
T ss_pred             CCCcceeeccee----------cCCceeeeeehhccccHHHHHHH----hcc-hhHHHHHHHHHHHHHHHHHHHhcC--e
Confidence            799999999998          55788999999999998887664    222 333778889999999999999999  9


Q ss_pred             eecCCCCCcEEEe-cCCCCCCceEEeeccceeecccc--CccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecc
Q 024842          183 AHNDVKPGNILIT-CRKGQPPLAILMDFGSARPAQSK--FALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELM  259 (262)
Q Consensus       183 vH~dikp~Nill~-~~~~~~~~~kl~Dfg~a~~~~~~--~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~  259 (262)
                      +||||||+|||++ +.+    .++|+|||.++..+..  ...-+..|.+||-.-     .+++....|+||+|+++|+|+
T Consensus       437 vhRDLkp~NIL~~~~~g----~lrltyFG~a~~~~~~~~tp~~t~~y~APEvl~-----~~~yt~acD~WSLGvlLy~ML  507 (612)
T KOG0603|consen  437 VHRDLKPGNILLDGSAG----HLRLTYFGFWSELERSCDTPALTLQYVAPEVLA-----IQEYTEACDWWSLGVLLYEML  507 (612)
T ss_pred             eecCCChhheeecCCCC----cEEEEEechhhhCchhhcccchhhcccChhhhc-----cCCCCcchhhHHHHHHHHHHH
Confidence            9999999999995 444    6999999999987766  223455677777664     344445679999999999999


Q ss_pred             cCC
Q 024842          260 FGR  262 (262)
Q Consensus       260 ~G~  262 (262)
                      +|+
T Consensus       508 ~G~  510 (612)
T KOG0603|consen  508 TGR  510 (612)
T ss_pred             hCC
Confidence            996

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=99.93  E-value=9.7e-25  Score=192.71  Aligned_cols=208  Identities=21%  Similarity=0.243  Sum_probs=131.7

Q ss_pred             ecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhC
Q 024842           23 INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLF  102 (262)
Q Consensus        23 ~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l  102 (262)
                      ...++|++.+.||+|+||.||+|++..+...                  .+..+++|+.......  +....|  .+...
T Consensus       129 ~~~~~y~l~~~LG~G~FG~VYka~~~~~~~~------------------~~~~vAvK~~~~~~~~--e~~~~e--~l~~~  186 (566)
T PLN03225        129 FKKDDFVLGKKLGEGAFGVVYKASLVNKQSK------------------KEGKYVLKKATEYGAV--EIWMNE--RVRRA  186 (566)
T ss_pred             CccCCeEEeEEEeeCCCeEEEEEEEcCCccc------------------cCcEEEEEEecccchh--HHHHHH--HHHhh
Confidence            3467999999999999999999998765210                  1336788865433221  111111  12222


Q ss_pred             CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhh----------------cCCCCCHHHHHHHHH
Q 024842          103 SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQT----------------KKEFFSTSDVLQIFY  166 (262)
Q Consensus       103 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~----------------~~~~~~~~~~~~i~~  166 (262)
                      .+.++..+...+.....    .......+++++|+.+++|.+++.....                ......+..+..++.
T Consensus       187 ~~~~~~~~~~~~~~~~~----~~~~~~~~LV~ey~~~gsL~~~l~~~~~~~~v~~~l~~~~~~l~~~~~r~~~~i~~i~~  262 (566)
T PLN03225        187 CPNSCADFVYGFLEPVS----SKKEDEYWLVWRYEGESTLADLMQSKEFPYNVEPYLLGKVQDLPKGLERENKIIQTIMR  262 (566)
T ss_pred             chhhHHHHHHhhhcccc----cccCCceEEEEEecCCCcHHHHHHhcCCchhHHHHhccchhhccccchhhHHHHHHHHH
Confidence            23344444433321111    1345678999999999999988753210                001122345678999


Q ss_pred             HHHHHHHHHHcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccc------cCccCcccCCcccchhhhhhh--
Q 024842          167 QICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQS------KFALGQRRYSCRNGLLSIVLH--  238 (262)
Q Consensus       167 ql~~~l~~lH~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~------~~~~~~~~~~~~~d~~s~g~~--  238 (262)
                      |++.||.|||+.+  |+||||||+|||++.+..   .+||+|||+|.....      ....+++.|++||.+......  
T Consensus       263 qll~aL~yLH~~g--IiHRDLKP~NILl~~~~~---~~KL~DFGlA~~l~~~~~~~~~~~~~t~~Y~APE~~~~~~~~~~  337 (566)
T PLN03225        263 QILFALDGLHSTG--IVHRDVKPQNIIFSEGSG---SFKIIDLGAAADLRVGINYIPKEFLLDPRYAAPEQYIMSTQTPS  337 (566)
T ss_pred             HHHHHHHHHHHCC--EEeCcCCHHHEEEeCCCC---cEEEEeCCCccccccccccCCcccccCCCccChHHhhccCCCCC
Confidence            9999999999988  999999999999985322   699999999975532      233567788888843211000  


Q ss_pred             ---------------hhhhhhcCcccchheeheecccC
Q 024842          239 ---------------LSELLSCGTVRVIQILMRELMFG  261 (262)
Q Consensus       239 ---------------~~e~~~~~~v~~~g~~~~~l~~G  261 (262)
                                     ........||||+|+++|||++|
T Consensus       338 ~~~~~~~~~~sp~l~~~~~~~k~DVwSlGviL~el~~~  375 (566)
T PLN03225        338 APSAPVATALSPVLWQLNLPDRFDIYSAGLIFLQMAFP  375 (566)
T ss_pred             CccccccccccchhccccCCCCcccHHHHHHHHHHHhC
Confidence                           00111234788888888887765

>smart00221 STYKc Protein kinase; unclassified specificity

Probab=99.92  E-value=5.6e-25  Score=173.12  Aligned_cols=189  Identities=29%  Similarity=0.384  Sum_probs=144.9

Q ss_pred             eEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchH-HHHHHHHHHHHhhhCCCCC
Q 024842           28 YRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNE-QLEMVREEIRVSSLFSHRN  106 (262)
Q Consensus        28 y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~-~~~~~~~E~~~l~~l~h~~  106 (262)
                      |.+.+.||.|++|.||++....+++                      .+++|........ ..+.+.+|+..++.++|+|
T Consensus         1 ~~~~~~i~~g~~~~v~~~~~~~~~~----------------------~~~iK~~~~~~~~~~~~~~~~e~~~~~~~~~~~   58 (225)
T smart00221        1 YELGKKLGEGAFGKVYLARDKGTGE----------------------LVAVKVLKKEKTEKQREEFLREIRILKKLKHPN   58 (225)
T ss_pred             CceeeEeecCCCeEEEEEEEcCCCc----------------------EEEEEeeccccchHHHHHHHHHHHHHHhCCCCC
Confidence            5778999999999999999876443                      6788877665444 5678889999999999999


Q ss_pred             ccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCC-CCHHHHHHHHHHHHHHHHHHHcCCCCeeec
Q 024842          107 LLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEF-FSTSDVLQIFYQICAGLKHMHSLEPPYAHN  185 (262)
Q Consensus       107 i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~-~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~  185 (262)
                      ++++++.+.          .....++++|++.+++|.+++..    ... +++..++.++.+++.++.+||+.+  ++|+
T Consensus        59 i~~~~~~~~----------~~~~~~~v~e~~~~~~L~~~~~~----~~~~~~~~~~~~~~~~l~~~l~~lh~~~--i~h~  122 (225)
T smart00221       59 IVKLYGVFE----------DPEPLYLVMEYCEGGDLFDYLRK----KGGKLSEEEARFYLRQILEALEYLHSLG--IVHR  122 (225)
T ss_pred             hhhheeeee----------cCCceEEEEeccCCCCHHHHHHh----cccCCCHHHHHHHHHHHHHHHHHHHhCC--eecC
Confidence            999998763          24678999999999999998863    223 789999999999999999999988  9999


Q ss_pred             CCCCCcEEEecCCCCCCceEEeeccceeeccccC------ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecc
Q 024842          186 DVKPGNILITCRKGQPPLAILMDFGSARPAQSKF------ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELM  259 (262)
Q Consensus       186 dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~------~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~  259 (262)
                      ||+|+||+++.++    .++|+|||.+.......      ..+...|.+|+...    .........|+|++|+++++|+
T Consensus       123 di~~~ni~v~~~~----~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~~~pe~~~----~~~~~~~~~Dv~~lG~~~~~l~  194 (225)
T smart00221      123 DLKPENILLGMDG----LVKLADFGLARFIHRDLAALLKTVKGTPFYLAPEVLL----GGKGYGEAVDIWSLGVILYELL  194 (225)
T ss_pred             CCCHHHEEEcCCC----CEEEeeCceeeEecCcccccccceeccCCcCCHhHhc----CCCCCCchhhHHHHHHHHHHHH
Confidence            9999999998765    69999999998765432      23344455555431    0011111356777777777776


Q ss_pred             cCC
Q 024842          260 FGR  262 (262)
Q Consensus       260 ~G~  262 (262)
                      +|+
T Consensus       195 ~g~  197 (225)
T smart00221      195 WGP  197 (225)
T ss_pred             HCC
Confidence            664

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase.

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.91  E-value=1.1e-24  Score=205.38  Aligned_cols=183  Identities=15%  Similarity=0.169  Sum_probs=134.8

Q ss_pred             ceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCCCCC
Q 024842           27 RYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSHRN  106 (262)
Q Consensus        27 ~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~h~~  106 (262)
                      .++....||+|+||.||+|.+..++.                      .||+|++......    ...|++.++.++|||
T Consensus       691 ~~~~~~~ig~G~~g~Vy~~~~~~~~~----------------------~vavK~~~~~~~~----~~~~~~~l~~l~Hpn  744 (968)
T PLN00113        691 SLKEENVISRGKKGASYKGKSIKNGM----------------------QFVVKEINDVNSI----PSSEIADMGKLQHPN  744 (968)
T ss_pred             hCCcccEEccCCCeeEEEEEECCCCc----------------------EEEEEEccCCccc----cHHHHHHHhhCCCCC
Confidence            45667789999999999999866544                      5777766533221    124578899999999


Q ss_pred             ccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcC-CCCeeec
Q 024842          107 LLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSL-EPPYAHN  185 (262)
Q Consensus       107 i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~-~~~ivH~  185 (262)
                      |+++++++.          .....+++|||+.+++|.+++.    .   +++..+..++.|++.||+|||.. .++++||
T Consensus       745 Iv~~~~~~~----------~~~~~~lv~Ey~~~g~L~~~l~----~---l~~~~~~~i~~~ia~~L~yLH~~~~~~iiH~  807 (968)
T PLN00113        745 IVKLIGLCR----------SEKGAYLIHEYIEGKNLSEVLR----N---LSWERRRKIAIGIAKALRFLHCRCSPAVVVG  807 (968)
T ss_pred             cceEEEEEE----------cCCCCEEEEeCCCCCcHHHHHh----c---CCHHHHHHHHHHHHHHHHHhccCCCCCeecC
Confidence            999999883          3566899999999999999884    1   78899999999999999999943 2339999


Q ss_pred             CCCCCcEEEecCCCCCCceEEeeccceeecc-ccCccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecccCC
Q 024842          186 DVKPGNILITCRKGQPPLAILMDFGSARPAQ-SKFALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMFGR  262 (262)
Q Consensus       186 dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~-~~~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~G~  262 (262)
                      ||||+||+++.+.    ..++. |+...... .....++..|++||.+...     ......||||+|+++|||++|+
T Consensus       808 dlkp~Nil~~~~~----~~~~~-~~~~~~~~~~~~~~~t~~y~aPE~~~~~-----~~~~~sDv~S~Gvvl~el~tg~  875 (968)
T PLN00113        808 NLSPEKIIIDGKD----EPHLR-LSLPGLLCTDTKCFISSAYVAPETRETK-----DITEKSDIYGFGLILIELLTGK  875 (968)
T ss_pred             CCCHHhEEECCCC----ceEEE-eccccccccCCCccccccccCcccccCC-----CCCcccchhhHHHHHHHHHhCC
Confidence            9999999998665    34443 44443221 1223456778888765322     1233578888888888888875

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.91  E-value=1.4e-23  Score=174.35  Aligned_cols=144  Identities=19%  Similarity=0.118  Sum_probs=110.1

Q ss_pred             ecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc-----chHHHHHHHHHHH
Q 024842           23 INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ-----NNEQLEMVREEIR   97 (262)
Q Consensus        23 ~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~-----~~~~~~~~~~E~~   97 (262)
                      ...++|.+.+.||+|+||.||+|.+.....                     ..+|+|+....     .....+.+.+|++
T Consensus        15 ~~~~~Y~~~~~IG~G~fg~Vy~a~~~~~~~---------------------~~vAiK~~~~~~~~~~~~~~~~~~~~E~~   73 (365)
T PRK09188         15 ALSARFVETAVLKRDVFSTVERGYFAGDPG---------------------TARAVRRRVSEVPWWSKPLARHLAAREIR   73 (365)
T ss_pred             cccCCceEccEEeecCcEEEEEEEEcCCCC---------------------eEEEEEEecccccccccHHHHHHHHHHHH
Confidence            346789999999999999999998775321                     24567654322     2233566899999


Q ss_pred             HhhhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHc
Q 024842           98 VSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHS  177 (262)
Q Consensus        98 ~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~  177 (262)
                      +++.++|+|+++.+..             .+..|++|||+.+++|.. ..    .   ..   ...++.|++.+|.|||+
T Consensus        74 iL~~L~h~~iv~~l~~-------------~~~~~LVmE~~~G~~L~~-~~----~---~~---~~~~~~~i~~aL~~lH~  129 (365)
T PRK09188         74 ALKTVRGIGVVPQLLA-------------TGKDGLVRGWTEGVPLHL-AR----P---HG---DPAWFRSAHRALRDLHR  129 (365)
T ss_pred             HHHhccCCCCCcEEEE-------------cCCcEEEEEccCCCCHHH-hC----c---cc---hHHHHHHHHHHHHHHHH
Confidence            9999999999853321             134799999999998862 11    1   11   14578899999999999


Q ss_pred             CCCCeeecCC-CCCcEEEecCCCCCCceEEeeccceeeccc
Q 024842          178 LEPPYAHNDV-KPGNILITCRKGQPPLAILMDFGSARPAQS  217 (262)
Q Consensus       178 ~~~~ivH~di-kp~Nill~~~~~~~~~~kl~Dfg~a~~~~~  217 (262)
                      .+  |+|||| ||+|||++.++    .++|+|||+|.....
T Consensus       130 ~g--IiHrDL~KP~NILv~~~~----~ikLiDFGlA~~~~~  164 (365)
T PRK09188        130 AG--ITHNDLAKPQNWLMGPDG----EAAVIDFQLASVFRR  164 (365)
T ss_pred             CC--CeeCCCCCcceEEEcCCC----CEEEEECccceeccc
Confidence            98  999999 99999997665    699999999997654

>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.91  E-value=1.5e-23  Score=165.77  Aligned_cols=201  Identities=22%  Similarity=0.302  Sum_probs=154.9

Q ss_pred             hccCCCCCceeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHH
Q 024842           12 YDSVNGGGDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEM   91 (262)
Q Consensus        12 ~~~~~~~~~~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~   91 (262)
                      +..++....+.|.+-+|+++++||+|+||.++.|.+..+++                      .||||.-...  ..+.+
T Consensus        14 ~s~sss~s~~~~VG~hyrVGkKIGeGsFG~lf~G~Nl~nne----------------------~VAIKfEPrk--S~APQ   69 (449)
T KOG1165|consen   14 SSGSSSSSGVLMVGPHYRVGKKIGEGSFGVLFLGKNLYNNE----------------------PVAIKFEPRK--SEAPQ   69 (449)
T ss_pred             cCCccCCCCceEecccceeccccccCcceeeecccccccCc----------------------eEEEEecccc--CCcch
Confidence            33444556788889999999999999999999999988766                      6777755443  33467


Q ss_pred             HHHHHHHhhhCC-CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHH
Q 024842           92 VREEIRVSSLFS-HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICA  170 (262)
Q Consensus        92 ~~~E~~~l~~l~-h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~  170 (262)
                      +..|.+..+.|. .+.|...+-.          +.+.-...+|++ +.|.+|.|+++.+.   ..|+..++..++.|++.
T Consensus        70 LrdEYr~YKlL~g~~GIP~vYYF----------GqeG~~NiLVid-LLGPSLEDLFD~Cg---R~FSvKTV~miA~Qmi~  135 (449)
T KOG1165|consen   70 LRDEYRTYKLLGGTEGIPQVYYF----------GQEGKYNILVID-LLGPSLEDLFDLCG---RRFSVKTVAMIAKQMIT  135 (449)
T ss_pred             HHHHHHHHHHHcCCCCCCceeee----------ccccchhhhhhh-hhCcCHHHHHHHhc---CcccHHhHHHHHHHHHH
Confidence            888888888885 6777776533          245666678888 67889999886543   34999999999999999


Q ss_pred             HHHHHHcCCCCeeecCCCCCcEEEecCCCCC-CceEEeeccceeeccccCc------------cCcccC-----------
Q 024842          171 GLKHMHSLEPPYAHNDVKPGNILITCRKGQP-PLAILMDFGSARPAQSKFA------------LGQRRY-----------  226 (262)
Q Consensus       171 ~l~~lH~~~~~ivH~dikp~Nill~~~~~~~-~~~kl~Dfg~a~~~~~~~~------------~~~~~~-----------  226 (262)
                      -++++|+..  +|.|||||+|+||...++.. ..+.++|||+|+.+.++..            .|+..|           
T Consensus       136 rie~vH~k~--LIYRDIKPdNFLIGrp~~k~~n~IhiiDFGmAK~YrDp~TkqHIPYrE~KSLsGTARYMSINTHlGrEQ  213 (449)
T KOG1165|consen  136 RIEYVHEKD--LIYRDIKPDNFLIGRPGTKDANVIHIIDFGMAKEYRDPKTKQHIPYREHKSLSGTARYMSINTHLGREQ  213 (449)
T ss_pred             HHHHHHhcc--eeecccCccceeecCCCCCCCceEEEEeccchhhhcCccccccCccccccccccceeeeEeeccccchh
Confidence            999999998  99999999999998765432 3578999999998876542            355555           


Q ss_pred             CcccchhhhhhhhhhhhhcCcccchhe
Q 024842          227 SCRNGLLSIVLHLSELLSCGTVRVIQI  253 (262)
Q Consensus       227 ~~~~d~~s~g~~~~e~~~~~~v~~~g~  253 (262)
                      +...|+.++|.++...+. |.+++-|+
T Consensus       214 SRRDDLEaLGHvFmYFLR-GsLPWQGL  239 (449)
T KOG1165|consen  214 SRRDDLEALGHVFMYFLR-GSLPWQGL  239 (449)
T ss_pred             hhhhhHHHhhhhhhhhcc-CCCccccc
Confidence            334588999988877664 66666664

>smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain

Probab=99.90  E-value=1.4e-23  Score=166.76  Aligned_cols=177  Identities=27%  Similarity=0.331  Sum_probs=137.5

Q ss_pred             cceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHH-HHHHHHHHHHhhhCCCCCccchhhhhHH
Q 024842           38 GFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQ-LEMVREEIRVSSLFSHRNLLPLLDHAII  116 (262)
Q Consensus        38 ~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~-~~~~~~E~~~l~~l~h~~i~~~~~~~~~  116 (262)
                      +||.||+|.+..+++                      .+++|......... .+.+.+|++.++.++|+|++++++.+. 
T Consensus         1 ~~g~v~~~~~~~~~~----------------------~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~-   57 (244)
T smart00220        1 SFGKVYLARDKKTGK----------------------LVAIKVIKKEKIKKKRERILREISILKKLKHPNIVRLYDVFE-   57 (244)
T ss_pred             CceEEEEEEECCCCc----------------------EEEEEEecccccccHHHHHHHHHHHHHhCCCCcHHHHHhhee-
Confidence            589999999876443                      67888776554433 678899999999999999999999873 


Q ss_pred             HhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeeecCCCCCcEEEec
Q 024842          117 AVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITC  196 (262)
Q Consensus       117 ~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~dikp~Nill~~  196 (262)
                               .....++++|+..+++|.+++.    ....+++..++.++.+++.++.+||+.+  ++|+||+|+||+++.
T Consensus        58 ---------~~~~~~l~~e~~~~~~L~~~~~----~~~~~~~~~~~~~~~~l~~~l~~lh~~~--i~h~~i~~~ni~~~~  122 (244)
T smart00220       58 ---------DEDKLYLVMEYCDGGDLFDLLK----KRGRLSEDEARFYARQILSALEYLHSNG--IIHRDLKPENILLDE  122 (244)
T ss_pred             ---------eCCEEEEEEeCCCCCCHHHHHH----hccCCCHHHHHHHHHHHHHHHHHHHHcC--eecCCcCHHHeEECC
Confidence                     2467899999999999999876    2333899999999999999999999988  999999999999987


Q ss_pred             CCCCCCceEEeeccceeecccc----CccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecccC
Q 024842          197 RKGQPPLAILMDFGSARPAQSK----FALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMFG  261 (262)
Q Consensus       197 ~~~~~~~~kl~Dfg~a~~~~~~----~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~G  261 (262)
                      ++    .++|+|||.+......    ...+...|.+||......     .....|+|++|++++++++|
T Consensus       123 ~~----~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~pE~~~~~~-----~~~~~Di~slG~~l~~l~~~  182 (244)
T smart00220      123 DG----HVKLADFGLARQLDPGGLLTTFVGTPEYMAPEVLLGKG-----YGKAVDVWSLGVILYELLTG  182 (244)
T ss_pred             CC----cEEEccccceeeeccccccccccCCcCCCCHHHHccCC-----CCchhhHHHHHHHHHHHHhC
Confidence            65    6999999999877653    234555666666443111     11235777777777777766

Phosphotransferases. Serine or threonine-specific kinase subfamily.

>KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms]

Probab=99.90  E-value=2.3e-23  Score=185.61  Aligned_cols=204  Identities=25%  Similarity=0.303  Sum_probs=160.9

Q ss_pred             ceeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc-chHHHHHHHHHHHH
Q 024842           20 DVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ-NNEQLEMVREEIRV   98 (262)
Q Consensus        20 ~~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~-~~~~~~~~~~E~~~   98 (262)
                      ...++.++.++.+.||.|.||.|++|.-.......               ......||+|..+.. ...+.+.+..|+++
T Consensus       290 ~~e~~~~~l~~~~~lg~g~fG~v~~~~~~~~~~~~---------------~~~~~~VaVK~~k~~~~~~~~~~~~~El~~  354 (609)
T KOG0200|consen  290 KWEIPRENLKLGKYLGEGAFGQVVKALLFGLSKAL---------------LSIYVTVAVKMLKENASSSEKKDLMSELNV  354 (609)
T ss_pred             ceeechhhccccceeecccccceEeEEEeeccccc---------------ccceEEEEEEecccccCcHHHHHHHHHHHH
Confidence            56677788889999999999999999865432210               112347888887755 33556789999999


Q ss_pred             hhhCC-CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhh---hcC---------CCCCHHHHHHHH
Q 024842           99 SSLFS-HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQ---TKK---------EFFSTSDVLQIF  165 (262)
Q Consensus        99 l~~l~-h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~---~~~---------~~~~~~~~~~i~  165 (262)
                      ++.+. |+|++.+.+++.          ..+..++++||+..|+|.+++...+   ...         ..++....+.++
T Consensus       355 m~~~g~H~niv~llG~~t----------~~~~~~~v~Ey~~~G~L~~~Lr~~r~~~~~~~~~~~~~~~~~L~~~dLlsfa  424 (609)
T KOG0200|consen  355 LKELGKHPNIVNLLGACT----------QDGPLYVIVEYAEHGDLLEFLRKKRVTESIDGSGVFPNERDALTTKDLLSFA  424 (609)
T ss_pred             HHHhcCCcchhhheeeec----------cCCceEEEEEeccCCcHHHHHHhccccccccccCCCccccCCcCHHHHHHHH
Confidence            99884 999999999873          2678999999999999999987544   000         238889999999


Q ss_pred             HHHHHHHHHHHcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccCc-------------------cCcccC
Q 024842          166 YQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKFA-------------------LGQRRY  226 (262)
Q Consensus       166 ~ql~~~l~~lH~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~~-------------------~~~~~~  226 (262)
                      .||+.|++||++..  ++||||-+.|||++.+.    .+||+|||+|+.......                   .....|
T Consensus       425 ~QIa~GMe~L~~~~--~vHRDLAaRNVLi~~~~----~~kIaDFGlar~~~~~~~y~~~~~~~~LP~kWmApEsl~~~~f  498 (609)
T KOG0200|consen  425 YQIANGMEYLASVP--CVHRDLAARNVLITKNK----VIKIADFGLARDHYNKDYYRTKSSAGTLPVKWMAPESLFDRVF  498 (609)
T ss_pred             HHHHHHHHHHhhCC--ccchhhhhhhEEecCCC----EEEEccccceeccCCCCceEecCCCCccceeecCHHHhccCcc
Confidence            99999999999988  99999999999998876    799999999985432221                   222456


Q ss_pred             CcccchhhhhhhhhhhhhcCcccchhee
Q 024842          227 SCRNGLLSIVLHLSELLSCGTVRVIQIL  254 (262)
Q Consensus       227 ~~~~d~~s~g~~~~e~~~~~~v~~~g~~  254 (262)
                      +...|+||+|+.+||+++.|..++.|+.
T Consensus       499 t~kSDVWSfGI~L~EifsLG~~PYp~~~  526 (609)
T KOG0200|consen  499 TSKSDVWSFGILLWEIFTLGGTPYPGIP  526 (609)
T ss_pred             cccchhhHHHHHHHHHhhCCCCCCCCCC
Confidence            6667899999999999999888888853

>KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.90  E-value=4.8e-23  Score=169.97  Aligned_cols=140  Identities=28%  Similarity=0.364  Sum_probs=111.3

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCC-
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFS-  103 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~-  103 (262)
                      +.+|.+.++||.|.|++||+|.|....+                      .||+|+.+.. ....+....||.+|+.++ 
T Consensus        77 ~gRY~v~rKLGWGHFSTVWLawDtq~~r----------------------~VAlKVvKSA-qhYtEaAlDEIklL~~v~~  133 (590)
T KOG1290|consen   77 GGRYHVQRKLGWGHFSTVWLAWDTQNKR----------------------YVALKVVKSA-QHYTEAALDEIKLLQQVRE  133 (590)
T ss_pred             CceEEEEEeccccccceeEEEeeccCCe----------------------EEEEEEEehh-hHHHHHHHHHHHHHHHHHh
Confidence            4799999999999999999999987765                      4566655433 334566778999998873 


Q ss_pred             -------CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHH
Q 024842          104 -------HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMH  176 (262)
Q Consensus       104 -------h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH  176 (262)
                             ..+|+++++.|..      .+....+.++|+| +.|..|..++....-  ..++...++.|++|++.||.|||
T Consensus       134 ~Dp~~~~~~~VV~LlD~Fkh------sGpNG~HVCMVfE-vLGdnLLklI~~s~Y--rGlpl~~VK~I~~qvL~GLdYLH  204 (590)
T KOG1290|consen  134 GDPNDPGKKCVVQLLDHFKH------SGPNGQHVCMVFE-VLGDNLLKLIKYSNY--RGLPLSCVKEICRQVLTGLDYLH  204 (590)
T ss_pred             cCCCCCCCceeeeeecccee------cCCCCcEEEEEeh-hhhhHHHHHHHHhCC--CCCcHHHHHHHHHHHHHHHHHHH
Confidence                   2479999999853      3455667888888 567788888875433  34899999999999999999999


Q ss_pred             cCCCCeeecCCCCCcEEEecC
Q 024842          177 SLEPPYAHNDVKPGNILITCR  197 (262)
Q Consensus       177 ~~~~~ivH~dikp~Nill~~~  197 (262)
                      +. ++|||.||||+|||+...
T Consensus       205 ~e-cgIIHTDlKPENvLl~~~  224 (590)
T KOG1290|consen  205 RE-CGIIHTDLKPENVLLCST  224 (590)
T ss_pred             Hh-cCccccCCCcceeeeecc
Confidence            83 459999999999999655

>KOG1163 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.89  E-value=2e-22  Score=152.95  Aligned_cols=192  Identities=21%  Similarity=0.311  Sum_probs=138.8

Q ss_pred             ceeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHh
Q 024842           20 DVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVS   99 (262)
Q Consensus        20 ~~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l   99 (262)
                      .-.+....|+++++||.|+||.+|+|.....++                      .||+|.-......  .++.-|..+.
T Consensus         9 ~~~iv~gky~lvrkiGsGSFGdIy~~~~i~~ge----------------------~VAiK~Es~~a~h--pqL~yEskvY   64 (341)
T KOG1163|consen    9 EELIVGGKYKLVRKIGSGSFGDIYLGISITSGE----------------------EVAIKLESSKAKH--PQLLYESKVY   64 (341)
T ss_pred             hhheeccceEEEEeecCCchhheeeeeeccCCc----------------------eEEEEeecccCCC--cchhHHHHHH
Confidence            345667899999999999999999999887666                      5677654433222  4566788888


Q ss_pred             hhCCCC-CccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcC
Q 024842          100 SLFSHR-NLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSL  178 (262)
Q Consensus       100 ~~l~h~-~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~  178 (262)
                      +.|++- .|+.+..+.          .+.....+||+ +.+.+|.+++..+..+   ++..+++.++-|++.-++|+|..
T Consensus        65 ~iL~~g~GiP~i~~y~----------~e~~ynvlVMd-LLGPsLEdLfnfC~R~---ftmkTvLMLaDQml~RiEyvH~r  130 (341)
T KOG1163|consen   65 RILQGGVGIPHIRHYG----------TEKDYNVLVMD-LLGPSLEDLFNFCSRR---FTMKTVLMLADQMLSRIEYVHLR  130 (341)
T ss_pred             HHhccCCCCchhhhhc----------cccccceeeee-ccCccHHHHHHHHhhh---hhHHhHHHHHHHHHHHHHHHHhh
Confidence            888764 444444333          45677788999 6788999988765543   89999999999999999999998


Q ss_pred             CCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC------------ccCcccCCc-----------ccchhhh
Q 024842          179 EPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF------------ALGQRRYSC-----------RNGLLSI  235 (262)
Q Consensus       179 ~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~------------~~~~~~~~~-----------~~d~~s~  235 (262)
                      +  .+||||||+|.|+.-+-. ...+-|+|||+|+.+-+..            ..|+..|++           ..|+.|+
T Consensus       131 ~--fiHRDIKPdNFLMGlgrh-~~kl~LIDFGLaKky~d~~t~~HIpyre~r~ltGTaRYASinAh~g~eqSRRDDmeSv  207 (341)
T KOG1163|consen  131 N--FIHRDIKPDNFLMGLGRH-CNKLYLIDFGLAKKYRDIRTRQHIPYREDRNLTGTARYASINAHLGIEQSRRDDMESV  207 (341)
T ss_pred             c--cccccCCccceeeccccc-cceEEEEeccchhhhccccccccCccccCCccceeeeehhhhhhhhhhhhhhhhhhhh
Confidence            8  999999999999964432 2268899999999775433            234555433           2456666


Q ss_pred             hhhhhhhhhcCcccchhe
Q 024842          236 VLHLSELLSCGTVRVIQI  253 (262)
Q Consensus       236 g~~~~e~~~~~~v~~~g~  253 (262)
                      |+.+..+ .+|..++-|+
T Consensus       208 gYvLmYf-nrG~LPWQgl  224 (341)
T KOG1163|consen  208 GYVLMYF-NRGSLPWQGL  224 (341)
T ss_pred             cceeeee-ecCCCccccc
Confidence            6665443 2355555444

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=99.88  E-value=7.6e-24  Score=180.40  Aligned_cols=191  Identities=19%  Similarity=0.280  Sum_probs=154.3

Q ss_pred             cCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCC
Q 024842           24 NENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFS  103 (262)
Q Consensus        24 ~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~  103 (262)
                      ..++|.++..+|.|.+|.||++++..+++                      ..|+|.++.........+..|+-+++..+
T Consensus        13 P~ddyellqrvgsgTygdvyKaRd~~s~e----------------------laavkvVkLep~dd~~~iqqei~~~~dc~   70 (829)
T KOG0576|consen   13 PQDDYELLQRVGSGTYGDVYKARDKRSGE----------------------LAAVKVVKLEPGDDFSGIQQEIGMLRDCR   70 (829)
T ss_pred             CccchhheeeecCCcccchhhhcccccCc----------------------hhhheeeeccCCccccccccceeeeecCC
Confidence            46799999999999999999999998876                      56777777666666677778999999999


Q ss_pred             CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCee
Q 024842          104 HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYA  183 (262)
Q Consensus       104 h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~iv  183 (262)
                      ||||+.+++.+.          ..+..|+.||||-+|+|++.-.    --.++++.++..+.+..+.+|+|||+.+  -+
T Consensus        71 h~nivay~gsyl----------r~dklwicMEycgggslQdiy~----~TgplselqiayvcRetl~gl~ylhs~g--k~  134 (829)
T KOG0576|consen   71 HPNIVAYFGSYL----------RRDKLWICMEYCGGGSLQDIYH----VTGPLSELQIAYVCRETLQGLKYLHSQG--KI  134 (829)
T ss_pred             CcChHHHHhhhh----------hhcCcEEEEEecCCCcccceee----ecccchhHHHHHHHhhhhccchhhhcCC--cc
Confidence            999999999994          4788999999999999998654    4567999999999999999999999998  99


Q ss_pred             ecCCCCCcEEEecCCCCCCceEEeeccceeecccc-----CccCcccCCcccchhhhhhhhhhhhhcCcccchheeheec
Q 024842          184 HNDVKPGNILITCRKGQPPLAILMDFGSARPAQSK-----FALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMREL  258 (262)
Q Consensus       184 H~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~-----~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l  258 (262)
                      |||||=.||++++.+    .+||+|||.+..+..-     .-.|++-|++||-. +.+---. ..-..|+|+.|+...|+
T Consensus       135 hRdiKGanilltd~g----DvklaDfgvsaqitati~KrksfiGtpywmapEva-averkgg-ynqlcdiwa~gitAiel  208 (829)
T KOG0576|consen  135 HRDIKGANILLTDEG----DVKLADFGVSAQITATIAKRKSFIGTPYWMAPEVA-AVERKGG-YNQLCDIWALGITAIEL  208 (829)
T ss_pred             cccccccceeecccC----ceeecccCchhhhhhhhhhhhcccCCccccchhHH-HHHhccc-ccccccccccccchhhh
Confidence            999999999999888    5999999998877643     34678877777632 2211100 01124777777776665

>cd00180 PKc Catalytic domain of Protein Kinases

Probab=99.88  E-value=3.7e-22  Score=154.97  Aligned_cols=180  Identities=29%  Similarity=0.411  Sum_probs=136.2

Q ss_pred             eecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchH-HHHHHHHHHHHhhhCCCCCccchhh
Q 024842           34 LGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNE-QLEMVREEIRVSSLFSHRNLLPLLD  112 (262)
Q Consensus        34 ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~  112 (262)
                      ||.|.+|.||++.+..+++                      .+++|........ ..+.+.+|+..++.++|++++++++
T Consensus         1 l~~g~~~~v~~~~~~~~~~----------------------~~~~K~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~   58 (215)
T cd00180           1 LGEGGFGTVYLARDKKTGK----------------------KVAIKIIKKEDSSSLLEELLREIEILKKLNHPNIVKLYG   58 (215)
T ss_pred             CCcCCceEEEEEEecCCCc----------------------EEEEEEeccccchhHHHHHHHHHHHHHhcCCCCeeeEee
Confidence            6899999999999875433                      6788877665432 3467889999999999999999998


Q ss_pred             hhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeeecCCCCCcE
Q 024842          113 HAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNI  192 (262)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~dikp~Ni  192 (262)
                      .+.          .....++++|++.+++|.+++....   ..+++..++.++.+++.++.+||+.+  ++|+||+|+||
T Consensus        59 ~~~----------~~~~~~~~~e~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~lh~~~--~~H~dl~~~ni  123 (215)
T cd00180          59 VFE----------DENHLYLVMEYCEGGSLKDLLKENE---GKLSEDEILRILLQILEGLEYLHSNG--IIHRDLKPENI  123 (215)
T ss_pred             eee----------cCCeEEEEEecCCCCcHHHHHHhcc---CCCCHHHHHHHHHHHHHHHHHHHhCC--eeccCCCHhhE
Confidence            873          3468999999999999999876321   45899999999999999999999998  99999999999


Q ss_pred             EEec-CCCCCCceEEeeccceeeccccC-----ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheec
Q 024842          193 LITC-RKGQPPLAILMDFGSARPAQSKF-----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMREL  258 (262)
Q Consensus       193 ll~~-~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l  258 (262)
                      +++. ++    .++|+|||.+.......     ......|.+|+..-+.    .......|+|++|++++++
T Consensus       124 ~~~~~~~----~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~----~~~~~~~D~~~lg~~~~~l  187 (215)
T cd00180         124 LLDSDNG----KVKLADFGLSKLLTSDKSLLKTIVGTPAYMAPEVLLGK----GYYSEKSDIWSLGVILYEL  187 (215)
T ss_pred             EEeCCCC----cEEEecCCceEEccCCcchhhcccCCCCccChhHhccc----CCCCchhhhHHHHHHHHHH
Confidence            9987 44    69999999998765442     2344445554433221    0111235666666666553

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which

>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain

Probab=99.88  E-value=4.8e-23  Score=157.84  Aligned_cols=158  Identities=12%  Similarity=0.050  Sum_probs=101.2

Q ss_pred             EEEeecccceEEEEEEecccccccccccccccccCCCCCCCCcccee--ehhhh-----cc-chHHHHHHHHHHHHhhhC
Q 024842           31 LRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYA--MKKVL-----IQ-NNEQLEMVREEIRVSSLF  102 (262)
Q Consensus        31 ~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--ik~~~-----~~-~~~~~~~~~~E~~~l~~l  102 (262)
                      ...||+|++|.||+|.+. +++.+++|....-......    ...+.  ...+.     .. ..........|+..+..+
T Consensus         2 ~~~ig~G~~~~Vy~a~~~-~g~~vAvKv~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l   76 (190)
T cd05147           2 NGCISTGKEANVYHATTA-NGEERAIKIYKTSILVFKD----RDRYVSGEFRFRHGYCKSNPRKMVRTWAEKEMRNLKRL   76 (190)
T ss_pred             CCccccccceEEEEEECC-CCCEEEEEEEEeccccccc----HHHhhcCCchhhccccCCCHHHHHHHHHHHHHHHHHHH
Confidence            457999999999999986 6664444421111000000    00000  00000     00 000112334688899988


Q ss_pred             CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHH-HcCCCC
Q 024842          103 SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHM-HSLEPP  181 (262)
Q Consensus       103 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~l-H~~~~~  181 (262)
                      .++++.......            ....+++|||+.++++.....    ....+++..+..++.|++.+|.++ |+.+  
T Consensus        77 ~~~~v~~p~~~~------------~~~~~iVmE~i~g~~l~~~~~----~~~~~~~~~~~~i~~qi~~~L~~l~H~~g--  138 (190)
T cd05147          77 VTAGIPCPEPIL------------LKSHVLVMEFIGDDGWAAPRL----KDAPLSESKARELYLQVIQIMRILYQDCR--  138 (190)
T ss_pred             HHCCCCCCcEEE------------ecCCEEEEEEeCCCCCcchhh----hcCCCCHHHHHHHHHHHHHHHHHHHHhCC--
Confidence            877764333211            122489999999877654322    234689999999999999999999 6888  


Q ss_pred             eeecCCCCCcEEEecCCCCCCceEEeeccceeecc
Q 024842          182 YAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQ  216 (262)
Q Consensus       182 ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~  216 (262)
                      |+||||||+||+++. +    .++|+|||+|....
T Consensus       139 iiHrDlkP~NIli~~-~----~v~LiDFG~a~~~~  168 (190)
T cd05147         139 LVHADLSEYNLLYHD-G----KLYIIDVSQSVEHD  168 (190)
T ss_pred             cccCCCCHHHEEEEC-C----cEEEEEccccccCC
Confidence            999999999999973 3    59999999997543

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c

>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain

Probab=99.87  E-value=9.4e-22  Score=151.14  Aligned_cols=160  Identities=13%  Similarity=0.083  Sum_probs=104.6

Q ss_pred             EEEeecccceEEEEEEecccccccccccccccccCCCCCCCCcccee--ehhhhc------cchHHHHHHHHHHHHhhhC
Q 024842           31 LRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYA--MKKVLI------QNNEQLEMVREEIRVSSLF  102 (262)
Q Consensus        31 ~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--ik~~~~------~~~~~~~~~~~E~~~l~~l  102 (262)
                      ...||+|++|.||+|.+. +++.+++|........   . .....+.  .+....      ........+..|...+..+
T Consensus         2 ~~~ig~G~~~~Vy~a~~~-~g~~vavKv~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l   76 (190)
T cd05145           2 NGCISTGKEANVYHARTG-DGEELAVKIYKTSTLS---F-KDRDKYIEGDPRFRSRYSKSNPRKLVFAWAEKEFRNLKRL   76 (190)
T ss_pred             CceeecCCCcEEEEEEcC-CCCEEEEEEEEcCcce---E-eeHHHHhcCCcccccccccCCHHHHHHHHHHHHHHHHHHH
Confidence            468999999999999987 6665544422111000   0 0000000  000000      0011123346788999999


Q ss_pred             CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHc-CCCC
Q 024842          103 SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHS-LEPP  181 (262)
Q Consensus       103 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~-~~~~  181 (262)
                      .|+++.......            ....+++|||+.++++.....    ....++......++.|++.++.++|+ .|  
T Consensus        77 ~~~~i~~p~~~~------------~~~~~lVmE~~~g~~~~~~~l----~~~~~~~~~~~~i~~~l~~~l~~lH~~~g--  138 (190)
T cd05145          77 YEAGVPVPEPIL------------LKKNVLVMEFIGDDGSPAPRL----KDVPLEEEEAEELYEQVVEQMRRLYQEAG--  138 (190)
T ss_pred             HhCCCCCceEEE------------ecCCEEEEEEecCCCchhhhh----hhccCCHHHHHHHHHHHHHHHHHHHHhCC--
Confidence            888875443322            112489999998875543221    22447888999999999999999999 89  


Q ss_pred             eeecCCCCCcEEEecCCCCCCceEEeeccceeecccc
Q 024842          182 YAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSK  218 (262)
Q Consensus       182 ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~  218 (262)
                      ++||||||+||+++ ++    .++|+|||++...+.+
T Consensus       139 ivHrDlkP~NIll~-~~----~~~liDFG~a~~~~~~  170 (190)
T cd05145         139 LVHGDLSEYNILYH-DG----KPYIIDVSQAVELDHP  170 (190)
T ss_pred             EecCCCChhhEEEE-CC----CEEEEEcccceecCCC
Confidence            99999999999998 44    5999999999876654

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro

>KOG0665 consensus Jun-N-terminal kinase (JNK) [Signal transduction mechanisms]

Probab=99.87  E-value=8.3e-23  Score=160.58  Aligned_cols=185  Identities=24%  Similarity=0.358  Sum_probs=135.8

Q ss_pred             ceeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc--chHHHHHHHHHHH
Q 024842           20 DVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ--NNEQLEMVREEIR   97 (262)
Q Consensus        20 ~~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~--~~~~~~~~~~E~~   97 (262)
                      .......+|.-++.++.|.- .|..+.+...++                      ++++|+....  +...+++..+|..
T Consensus        11 s~ftv~~Ry~nL~p~~~g~~-~v~~a~D~v~~~----------------------~v~ikk~~~pf~n~~~akra~rel~   67 (369)
T KOG0665|consen   11 STFTVPKRYVNLKPIGSGAQ-IVVAAFDQVLGR----------------------PVAIKKLSRPFQNQTHAKRAYRELK   67 (369)
T ss_pred             cceeeeeeeeeecccCCCCc-eEEecchhhccC----------------------ceehhhhcCccccCccchhhhhhhh
Confidence            44455678999999999988 788888877655                      4555554332  3445677889999


Q ss_pred             HhhhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHc
Q 024842           98 VSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHS  177 (262)
Q Consensus        98 ~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~  177 (262)
                      ++..++|+|++++++.|.=   .. .-+.....|++||++. .+|.+.+.      -.+..+++..++.|++.|++|||+
T Consensus        68 l~~~v~~~nii~l~n~ftP---~~-~l~~~~e~y~v~e~m~-~nl~~vi~------~elDH~tis~i~yq~~~~ik~lhs  136 (369)
T KOG0665|consen   68 LMKCVNHKNIISLLNVFTP---QK-TLEEFQEVYLVMELMD-ANLCQVIL------MELDHETISYILYQMLCGIKHLHS  136 (369)
T ss_pred             hhhhhcccceeeeeeccCc---cc-cHHHHHhHHHHHHhhh-hHHHHHHH------HhcchHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999998830   00 0122456889999764 46666554      127788999999999999999999


Q ss_pred             CCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC----ccCccc-----------CCcccchhhhhhhhhhh
Q 024842          178 LEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF----ALGQRR-----------YSCRNGLLSIVLHLSEL  242 (262)
Q Consensus       178 ~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~~~-----------~~~~~d~~s~g~~~~e~  242 (262)
                      .+  |+||||||+||++..+.    .+||.|||+|.......    ...+.-           |.+..|+||.||++.|+
T Consensus       137 ~~--IihRdLkPsnivv~~~~----~lKi~dfg~ar~e~~~~~mtpyVvtRyyrapevil~~~~ke~vdiwSvGci~gEl  210 (369)
T KOG0665|consen  137 AG--IIHRDLKPSNIVVNSDC----TLKILDFGLARTEDTDFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEL  210 (369)
T ss_pred             cc--eeecccCcccceecchh----heeeccchhhcccCcccccCchhheeeccCchheeccCCcccchhhhhhhHHHHH
Confidence            99  99999999999997766    79999999998765442    122223           55555666666666666


Q ss_pred             hh
Q 024842          243 LS  244 (262)
Q Consensus       243 ~~  244 (262)
                      ..
T Consensus       211 i~  212 (369)
T KOG0665|consen  211 IL  212 (369)
T ss_pred             hh
Confidence            54

>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional

Probab=99.86  E-value=1.2e-21  Score=152.16  Aligned_cols=147  Identities=16%  Similarity=0.201  Sum_probs=109.4

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHH---HHH------HHHH
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQ---LEM------VREE   95 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~---~~~------~~~E   95 (262)
                      .++|++.+.+|.|+||.||++.+.  +                      +.+++|.+.......   .+.      +.+|
T Consensus        30 ~~~y~~~~~l~~~~f~~v~l~~~~--~----------------------~~~iiKvf~~~~~~~~~~~~~f~~g~~~e~E   85 (232)
T PRK10359         30 SYNIKTIKVFRNIDDTKVSLIDTD--Y----------------------GKYILKVFAPKVKRTERFLKSFVKGDYYENL   85 (232)
T ss_pred             hCceEEEEEecCCCceEEEEEecC--C----------------------CcEEEEEechhcCchHHHHHhhhhhHHHHHH
Confidence            679999999999999999996542  2                      257777765432211   122      5789


Q ss_pred             HHHhhhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHH
Q 024842           96 IRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHM  175 (262)
Q Consensus        96 ~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~l  175 (262)
                      +..+..+.|++|..+...+...  ........+..+++|||++|.+|.++..        +++.    ...+++.++..+
T Consensus        86 a~~l~rL~~~GI~~~~d~~~~~--~~~~~~~~~~~~lvmEyi~G~tL~~~~~--------~~~~----~~~~i~~~l~~l  151 (232)
T PRK10359         86 IVQTDRVRSEGLASLNDFYLLA--ERKTLRYAHTYIMLIEYIEGVELNDMPE--------ISED----VKAKIKASIESL  151 (232)
T ss_pred             HHHHHHHHHCCCCcceEeeeec--ccccccccCCeEEEEEEECCccHHHhhh--------ccHH----HHHHHHHHHHHH
Confidence            9999999999999998775421  0000112356899999999999977632        3332    356999999999


Q ss_pred             HcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeecc
Q 024842          176 HSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQ  216 (262)
Q Consensus       176 H~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~  216 (262)
                      |+.|  ++|||+||.||+++.++     ++|+|||......
T Consensus       152 H~~g--i~H~Dikp~Nili~~~g-----i~liDfg~~~~~~  185 (232)
T PRK10359        152 HQHG--MVSGDPHKGNFIVSKNG-----LRIIDLSGKRCTA  185 (232)
T ss_pred             HHcC--CccCCCChHHEEEeCCC-----EEEEECCCccccc
Confidence            9999  99999999999997654     9999999886553

>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]

Probab=99.86  E-value=1.1e-21  Score=171.13  Aligned_cols=189  Identities=21%  Similarity=0.254  Sum_probs=133.3

Q ss_pred             eEEEEEeecccce-EEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhC-CCC
Q 024842           28 YRILRQLGEGGFA-YVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLF-SHR  105 (262)
Q Consensus        28 y~~~~~ig~G~~g-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l-~h~  105 (262)
                      |.-.+.+|.|+.| .||+|.-.                        +++||+|++.....   ....+|+..++.- +||
T Consensus       511 ~~~~eilG~Gs~Gt~Vf~G~ye------------------------~R~VAVKrll~e~~---~~A~rEi~lL~eSD~H~  563 (903)
T KOG1027|consen  511 FSPKEILGYGSNGTVVFRGVYE------------------------GREVAVKRLLEEFF---DFAQREIQLLQESDEHP  563 (903)
T ss_pred             eccHHHcccCCCCcEEEEEeeC------------------------CceehHHHHhhHhH---HHHHHHHHHHHhccCCC
Confidence            4445567888877 57888753                        45899999876543   3345789888766 599


Q ss_pred             CccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeeec
Q 024842          106 NLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHN  185 (262)
Q Consensus       106 ~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~  185 (262)
                      ||++++..-          ......|+..|.|. .+|.++++.-............+.+..|+++||++||+.+  |+||
T Consensus       564 NviRyyc~E----------~d~qF~YIalELC~-~sL~dlie~~~~d~~~~~~i~~~~~l~q~~~GlaHLHsl~--iVHR  630 (903)
T KOG1027|consen  564 NVIRYYCSE----------QDRQFLYIALELCA-CSLQDLIESSGLDVEMQSDIDPISVLSQIASGLAHLHSLK--IVHR  630 (903)
T ss_pred             ceEEEEeec----------cCCceEEEEehHhh-hhHHHHHhccccchhhcccccHHHHHHHHHHHHHHHHhcc--cccc
Confidence            999999763          55677888889664 6999998742000011111456788999999999999988  9999


Q ss_pred             CCCCCcEEEecCC-CCCCceEEeeccceeeccccC--------ccCcccCCcccchhhhhhhhhhhhhcCcccchheehe
Q 024842          186 DVKPGNILITCRK-GQPPLAILMDFGSARPAQSKF--------ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMR  256 (262)
Q Consensus       186 dikp~Nill~~~~-~~~~~~kl~Dfg~a~~~~~~~--------~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~  256 (262)
                      ||||.||||+..+ .....++|+|||+|+......        ..|+..|.+||.+-.-.-..     .-|++++|++.|
T Consensus       631 DLkPQNILI~~~~~~~~~ra~iSDfglsKkl~~~~sS~~r~s~~sGt~GW~APE~L~~~~~~~-----avDiFslGCvfy  705 (903)
T KOG1027|consen  631 DLKPQNILISVPSADGTLRAKISDFGLSKKLAGGKSSFSRLSGGSGTSGWQAPEQLREDRKTQ-----AVDIFSLGCVFY  705 (903)
T ss_pred             cCCCceEEEEccCCCcceeEEecccccccccCCCcchhhcccCCCCcccccCHHHHhccccCc-----ccchhhcCceEE
Confidence            9999999998642 234579999999999876543        35666777776543222111     246777777777


Q ss_pred             ecccC
Q 024842          257 ELMFG  261 (262)
Q Consensus       257 ~l~~G  261 (262)
                      ..++|
T Consensus       706 Yvltg  710 (903)
T KOG1027|consen  706 YVLTG  710 (903)
T ss_pred             EEecC
Confidence            76665

>PRK10345 hypothetical protein; Provisional

Probab=99.86  E-value=2.8e-21  Score=149.52  Aligned_cols=144  Identities=15%  Similarity=0.170  Sum_probs=105.0

Q ss_pred             EEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhC-----CC
Q 024842           30 ILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLF-----SH  104 (262)
Q Consensus        30 ~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l-----~h  104 (262)
                      -.+.||+|+++.||.  ++.+.                       ..++|+.........+.+.+|+.+++.+     .|
T Consensus         6 ~~~~LG~G~~~~Vy~--hp~~~-----------------------~k~IKv~~~~~~~~~~~~~rEi~~l~~L~~~~~~h   60 (210)
T PRK10345          6 EQSPLGTGRHRKCYA--HPEDA-----------------------QRCIKIVYHRGDGGDKEIRRELKYYAHLSRRLIDW   60 (210)
T ss_pred             CcceecCCCceEEEE--CCCCc-----------------------CeEEEEEeccccchHHHHHHHHHHHHHhhccCCCC
Confidence            357899999999995  44332                       2357766554444456789999999999     57


Q ss_pred             CCccchhhhhHHHhhhccCCCCcceeE-EEEee--cCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHH-HHHHcCCC
Q 024842          105 RNLLPLLDHAIIAVKANQEGSWKHEAY-LLFPV--HLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGL-KHMHSLEP  180 (262)
Q Consensus       105 ~~i~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~--~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l-~~lH~~~~  180 (262)
                      |||+++++++..       +...+..+ ++++|  +.+++|.+++.    . ..+++.  ..++.|++.++ +|||+++ 
T Consensus        61 ~nIvr~yg~~et-------~~g~g~v~~~I~e~~G~~~~tL~~~l~----~-~~~~e~--~~~~~~~L~~l~~yLh~~~-  125 (210)
T PRK10345         61 SGIPRYYGTVET-------DCGTGYVYDVIADFDGKPSITLTEFAE----Q-CRYEED--VAQLRQLLKKLKRYLLDNR-  125 (210)
T ss_pred             cccceeeEEEEe-------CCCCeEEEEEEecCCCCcchhHHHHHH----c-ccccHh--HHHHHHHHHHHHHHHHHCC-
Confidence            999999998842       11123333 78999  55799999985    2 235555  35678888888 9999999 


Q ss_pred             CeeecCCCCCcEEEecCCCCCCceEEee-ccceee
Q 024842          181 PYAHNDVKPGNILITCRKGQPPLAILMD-FGSARP  214 (262)
Q Consensus       181 ~ivH~dikp~Nill~~~~~~~~~~kl~D-fg~a~~  214 (262)
                       |+||||||+|||++..++....++|+| ||....
T Consensus       126 -IvhrDlKp~NILl~~~~~~~~~~~LiDg~G~~~~  159 (210)
T PRK10345        126 -IVTMELKPQNILCQRISESEVIPVVCDNIGESTF  159 (210)
T ss_pred             -EeecCCCHHHEEEeccCCCCCcEEEEECCCCcce
Confidence             999999999999986554445799999 555443

>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]

Probab=99.85  E-value=6.9e-22  Score=160.52  Aligned_cols=146  Identities=21%  Similarity=0.382  Sum_probs=122.1

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCC-
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFS-  103 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~-  103 (262)
                      .+.|.++.+||.|.|+.||++.+....                   ..+..||+|.+...+.  ...+..|++.|..+. 
T Consensus        35 ~~~~~~v~kigeGsFssv~~a~~~~~~-------------------~~~~~valk~i~~ts~--p~ri~~El~~L~~~gG   93 (418)
T KOG1167|consen   35 SNAYKVVNKIGEGSFSSVYKATDIEQD-------------------TKRRYVALKAIYRTSS--PSRILNELEMLYRLGG   93 (418)
T ss_pred             hhhhhhhccccccchhhhhhhhHhhhc-------------------cccceEeeeecccccC--chHHHHHHHHHHHhcc
Confidence            467999999999999999999987620                   0234788887765543  356889999999884 


Q ss_pred             CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCee
Q 024842          104 HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYA  183 (262)
Q Consensus       104 h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~iv  183 (262)
                      +.||+++.+++          ..++...+++||++.....++..    .   ++-.++..+++.++.||.++|.+|  |+
T Consensus        94 ~~ni~~~~~~~----------rnnd~v~ivlp~~~H~~f~~l~~----~---l~~~~i~~Yl~~ll~Al~~~h~~G--Iv  154 (418)
T KOG1167|consen   94 SDNIIKLNGCF----------RNNDQVAIVLPYFEHDRFRDLYR----S---LSLAEIRWYLRNLLKALAHLHKNG--IV  154 (418)
T ss_pred             chhhhcchhhh----------ccCCeeEEEecccCccCHHHHHh----c---CCHHHHHHHHHHHHHHhhhhhccC--cc
Confidence            89999999988          55788999999999988877664    1   678899999999999999999999  99


Q ss_pred             ecCCCCCcEEEecCCCCCCceEEeecccee
Q 024842          184 HNDVKPGNILITCRKGQPPLAILMDFGSAR  213 (262)
Q Consensus       184 H~dikp~Nill~~~~~~~~~~kl~Dfg~a~  213 (262)
                      ||||||.|+|.+....   .-.|.|||+|.
T Consensus       155 HRDiKpsNFL~n~~t~---rg~LvDFgLA~  181 (418)
T KOG1167|consen  155 HRDIKPSNFLYNRRTQ---RGVLVDFGLAQ  181 (418)
T ss_pred             ccCCCccccccccccC---CceEEechhHH
Confidence            9999999999985543   57799999998

>KOG1164 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.85  E-value=9.9e-21  Score=157.18  Aligned_cols=185  Identities=30%  Similarity=0.421  Sum_probs=135.1

Q ss_pred             ceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCCC--
Q 024842           27 RYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSH--  104 (262)
Q Consensus        27 ~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~h--  104 (262)
                      +|++.++||+|+||.||++.+...+.                     ..+|+|............+..|..++..+..  
T Consensus        19 ~~~i~~~iG~G~fG~V~~v~~~~~~~---------------------~~~a~K~e~~~~~~~~~~l~~E~~vl~~l~~~~   77 (322)
T KOG1164|consen   19 RYKLGKKIGEGGFGAVYLVSDKSEKN---------------------KEYAKKLEKKELGSKPSVLKIEIQVLKKLEKKN   77 (322)
T ss_pred             ceEEeeeccccCCceEEEEEecCCCC---------------------eeEEEEEEEecccCCCccchhHHHHHHHHhhhc
Confidence            89999999999999999999876531                     2466665554432222256778888887763  


Q ss_pred             --CCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCe
Q 024842          105 --RNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPY  182 (262)
Q Consensus       105 --~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~i  182 (262)
                        +++..++....         ......|+||+ +.+.+|.++.....  ...++..++..++.|++.+|+++|+.|  +
T Consensus        78 ~~~~~~~~~~~G~---------~~~~~~~iVM~-l~G~sL~dl~~~~~--~~~fs~~T~l~ia~q~l~~l~~lH~~G--~  143 (322)
T KOG1164|consen   78 GPSHFPKLLDHGR---------STEDFNFIVMS-LLGPSLEDLRKRNP--PGRFSRKTVLRIAIQNLNALEDLHSKG--F  143 (322)
T ss_pred             CCCCCCEEEEecc---------CCCceeEEEEe-ccCccHHHHHHhCC--CCCcCHhHHHHHHHHHHHHHHHHHhcC--c
Confidence              56777766541         23556788888 78889999765333  456999999999999999999999999  9


Q ss_pred             eecCCCCCcEEEecCC-CCCCceEEeecccee--ecc-cc------------CccCcccCCcc-----------cchhhh
Q 024842          183 AHNDVKPGNILITCRK-GQPPLAILMDFGSAR--PAQ-SK------------FALGQRRYSCR-----------NGLLSI  235 (262)
Q Consensus       183 vH~dikp~Nill~~~~-~~~~~~kl~Dfg~a~--~~~-~~------------~~~~~~~~~~~-----------~d~~s~  235 (262)
                      +||||||+|+++.... .....+.|.|||+|+  .+. ..            ...++..|+++           .|+||+
T Consensus       144 iHRDiKp~N~~~g~~~~~~~~~~~llDfGlar~~~~~~~~~~~~~~~r~~~~~~rGT~ry~S~~~H~~~e~~r~DDles~  223 (322)
T KOG1164|consen  144 IHRDIKPENFVVGQSSRSEVRTLYLLDFGLARRFKYVGDSGGNLRPPRPQKGLFRGTLRYASINVHLGIEQGRRDDLESL  223 (322)
T ss_pred             ccCCcCHHHeeecCCCCcccceEEEEecCCCccccccCCCCcccccCCCCccCCCCccccccHHHhCCCccCCchhhhhH
Confidence            9999999999998653 112368999999998  321 10            11255566443           578888


Q ss_pred             hhhhhhhhhcC
Q 024842          236 VLHLSELLSCG  246 (262)
Q Consensus       236 g~~~~e~~~~~  246 (262)
                      .+++.++....
T Consensus       224 ~Y~l~el~~g~  234 (322)
T KOG1164|consen  224 FYMLLELLKGS  234 (322)
T ss_pred             HHHHHHHhcCC
Confidence            88888877543

>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]

Probab=99.83  E-value=8.3e-21  Score=153.24  Aligned_cols=208  Identities=22%  Similarity=0.244  Sum_probs=160.7

Q ss_pred             CceeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc-chHHHHHHHHHHH
Q 024842           19 GDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ-NNEQLEMVREEIR   97 (262)
Q Consensus        19 ~~~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~-~~~~~~~~~~E~~   97 (262)
                      .+..+..+++++...+-+|.||.||.|.|+....                 +.+.+.+.+|.++.. +.-+...+..|.-
T Consensus       277 ~~l~v~r~Rv~l~~llqEGtFGri~~gI~~eEdt-----------------~n~~q~v~vKTvk~~AS~iQv~~~L~es~  339 (563)
T KOG1024|consen  277 QELTVQRCRVRLSCLLQEGTFGRIYRGIWREEDT-----------------YNDCQEVLVKTVKQHASQIQVNLLLQESM  339 (563)
T ss_pred             HhhhhhhhheechhhhhcCchhheeeeeecccCC-----------------cchHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence            4455667788999999999999999998875433                 345678888888765 3444567888988


Q ss_pred             HhhhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhc----CCCCCHHHHHHHHHHHHHHHH
Q 024842           98 VSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTK----KEFFSTSDVLQIFYQICAGLK  173 (262)
Q Consensus        98 ~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~----~~~~~~~~~~~i~~ql~~~l~  173 (262)
                      .+..+.|||++++.++.+         +.....++++++..-|.|..++..++..    ...++.-++..++.|++.|++
T Consensus       340 lly~~sH~nll~V~~V~i---------e~~~~P~V~y~~~~~gNLK~FL~~Cr~~~~~~aqtvtt~qlV~masQla~am~  410 (563)
T KOG1024|consen  340 LLYGASHPNLLSVLGVSI---------EDYATPFVLYPATGVGNLKSFLQICRGDDPSYAQTVTTIQLVLMASQLAMAME  410 (563)
T ss_pred             HHhcCcCCCccceeEEEe---------eccCcceEEEeccCcchHHHHHHHhccCCCccccchhHHHHHHHHHHHHHHHH
Confidence            899999999999998875         3466788889988889999988755422    234677788899999999999


Q ss_pred             HHHcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC------------------ccCcccCCcccchhhh
Q 024842          174 HMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF------------------ALGQRRYSCRNGLLSI  235 (262)
Q Consensus       174 ~lH~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~------------------~~~~~~~~~~~d~~s~  235 (262)
                      |||..+  ++|.||.+.|++|++.-    .+||+|=.+++..-+..                  ......|++.+|+|++
T Consensus       411 hlh~~~--ViHkDiAaRNCvIdd~L----qVkltDsaLSRDLFP~DYhcLGDnEnRPvkWMslEal~n~~yssasDvWsf  484 (563)
T KOG1024|consen  411 HLHNHG--VIHKDIAARNCVIDDQL----QVKLTDSALSRDLFPGDYHCLGDNENRPVKWMSLEALQNSHYSSASDVWSF  484 (563)
T ss_pred             HHHhcC--cccchhhhhcceehhhe----eEEeccchhccccCcccccccCCCCCCcccccCHHHHhhhhhcchhhhHHH
Confidence            999988  99999999999997553    79999999998654322                  1344466777788888


Q ss_pred             hhhhhhhhhcCcccchheeheec
Q 024842          236 VLHLSELLSCGTVRVIQILMREL  258 (262)
Q Consensus       236 g~~~~e~~~~~~v~~~g~~~~~l  258 (262)
                      |+.+||+++.|..+..-+--+||
T Consensus       485 GVllWELmtlg~~PyaeIDPfEm  507 (563)
T KOG1024|consen  485 GVLLWELMTLGKLPYAEIDPFEM  507 (563)
T ss_pred             HHHHHHHHhcCCCCccccCHHHH
Confidence            88888888777776666555443

>KOG4158 consensus BRPK/PTEN-induced protein kinase [Signal transduction mechanisms]

Probab=99.81  E-value=3e-20  Score=150.55  Aligned_cols=103  Identities=24%  Similarity=0.312  Sum_probs=82.8

Q ss_pred             CCCCccchhhhhHHHhhhccC-----------------CCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHH
Q 024842          103 SHRNLLPLLDHAIIAVKANQE-----------------GSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIF  165 (262)
Q Consensus       103 ~h~~i~~~~~~~~~~~~~~~~-----------------~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~  165 (262)
                      +||||+++++.|.++++....                 -+.....|++|.. ...+|..++.    .+ ..+......++
T Consensus       274 ~HPNIvri~~aF~dsv~~lPda~~~YPdalp~R~~p~g~g~~~tlylvMkr-Y~~tLr~yl~----~~-~~s~r~~~~~l  347 (598)
T KOG4158|consen  274 KHPNIVRIQTAFIDSVKVLPDAIERYPDALPARWYPSGAGEPKTLYLVMKR-YRQTLREYLW----TR-HRSYRTGRVIL  347 (598)
T ss_pred             CCCCEEeehhhhhhhhccCCchhhhCcccccceecccccCCCceEEEehhc-chhhHHHHHh----cC-CCchHHHHHHH
Confidence            599999999999887653322                 1223457778874 4568888775    22 25677788899


Q ss_pred             HHHHHHHHHHHcCCCCeeecCCCCCcEEEecCCCCCCceEEeecccee
Q 024842          166 YQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSAR  213 (262)
Q Consensus       166 ~ql~~~l~~lH~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~  213 (262)
                      .|++.|+.|||.+|  |.|||+|.+|||+.-+++..|+++|+|||+|-
T Consensus       348 aQlLEav~hL~~hg--vAhRDlKSDNiL~ElddD~~P~LVvaDFGCcL  393 (598)
T KOG4158|consen  348 AQLLEAVTHLHKHG--VAHRDLKSDNILLELDDDEIPQLVVADFGCCL  393 (598)
T ss_pred             HHHHHHHHHHHHcc--chhhcccccceEEEecCCCCcEEEEcccceee
Confidence            99999999999999  99999999999999888888899999999885

>smart00090 RIO RIO-like kinase

Probab=99.78  E-value=8.9e-19  Score=138.67  Aligned_cols=148  Identities=13%  Similarity=0.063  Sum_probs=104.9

Q ss_pred             CceEEEEEeecccceEEEEEE-ecccccccccccccccccCCCCCCCCccceeehhhhccc-------------------
Q 024842           26 NRYRILRQLGEGGFAYVYLVK-ETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN-------------------   85 (262)
Q Consensus        26 ~~y~~~~~ig~G~~g~V~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~-------------------   85 (262)
                      .-|++.+.||+|++|.||+|. +..+++.                      ||+|.+....                   
T Consensus        28 ~~~~i~~~Lg~G~~g~Vy~a~~~~~~g~~----------------------vaiK~~~~~~~~~~~~~~~~~~~~~~~~~   85 (237)
T smart00090       28 ILSAIGGCISTGKEANVYHALDFDGSGKE----------------------RAVKIYRTGTLEFKRRDRYVDGDFRFKYR   85 (237)
T ss_pred             chHHhCCeeccCcceeEEEEEecCCCCcE----------------------EEEEEEEcCcceecchhhhcccchhhccC
Confidence            358899999999999999998 5555554                      4444333211                   


Q ss_pred             -----hHHHHHHHHHHHHhhhCCCCC--ccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCH
Q 024842           86 -----NEQLEMVREEIRVSSLFSHRN--LLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFST  158 (262)
Q Consensus        86 -----~~~~~~~~~E~~~l~~l~h~~--i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~  158 (262)
                           ......+..|+..++.+.+..  +++++..              ...+++||++.+.++.....    .......
T Consensus        86 ~~~~~~~~~~~~~~E~~~L~~L~~~~i~~p~~~~~--------------~~~~lV~E~~~g~~L~~~~~----~~~~~~~  147 (237)
T smart00090       86 KINPRKLVRLWAEKEFRNLQRLYEAGVPVPKPIAW--------------RRNVLVMEFIGGDGLPAPRL----KDVEPEE  147 (237)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeEe--------------cCceEEEEEecCCccccccc----ccCCcch
Confidence                 011234568999998887532  3333321              23589999999988866432    2234566


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC
Q 024842          159 SDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF  219 (262)
Q Consensus       159 ~~~~~i~~ql~~~l~~lH~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~  219 (262)
                      ..+..++.|++.++.+||+.+ .++|+||||+||+++ ++    .++|+|||.+.....+.
T Consensus       148 ~~~~~i~~qi~~~l~~LH~~g-~iiH~Dikp~NIli~-~~----~i~LiDFg~a~~~~~~~  202 (237)
T smart00090      148 EEEFELYDDILEEMRKLYKEG-ELVHGDLSEYNILVH-DG----KVVIIDVSQSVELDHPM  202 (237)
T ss_pred             HHHHHHHHHHHHHHHHHHhcC-CEEeCCCChhhEEEE-CC----CEEEEEChhhhccCCcc
Confidence            677899999999999999853 399999999999998 43    59999999998655543

>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.76  E-value=2.1e-18  Score=156.24  Aligned_cols=159  Identities=19%  Similarity=0.295  Sum_probs=120.4

Q ss_pred             CCCCceeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHH
Q 024842           16 NGGGDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREE   95 (262)
Q Consensus        16 ~~~~~~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E   95 (262)
                      +-..+.-+.+..|.|.+.||+|+||.||.|.... +                      +.+|+|.-+......   |.--
T Consensus       688 ~~~~~~~~~~~~~~I~~e~G~g~y~~vy~a~~~~-~----------------------~~~alK~e~P~~~WE---fYI~  741 (974)
T KOG1166|consen  688 NPNTEFEVGGEKFCISKEIGEGSYGSVYVATHSN-G----------------------KLVALKVEKPPNPWE---FYIC  741 (974)
T ss_pred             CccceeeecceeEEEEeeeccccceEEEEeecCC-C----------------------cEEEEEeecCCCcee---eeeh
Confidence            3444556778999999999999999999999765 3                      367888766554321   2222


Q ss_pred             HHHhhhCC---CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHH
Q 024842           96 IRVSSLFS---HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGL  172 (262)
Q Consensus        96 ~~~l~~l~---h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l  172 (262)
                      .+++.+|+   -+.|+++..+++.          .+..+++++|...|+|.+++.    ..+.+++..+..++.|++.-+
T Consensus       742 ~q~~~RLk~~~~~~~~~~~~a~~~----------~~~S~lv~ey~~~Gtlld~~N----~~~~m~e~lv~~~~~qml~iv  807 (974)
T KOG1166|consen  742 LQVMERLKPQMLPSIMHISSAHVF----------QNASVLVSEYSPYGTLLDLIN----TNKVMDEYLVMFFSCQMLRIV  807 (974)
T ss_pred             HHHHHhhchhhhcchHHHHHHHcc----------CCcceeeeeccccccHHHhhc----cCCCCCchhhhHHHHHHHHHH
Confidence            23333443   3455666555532          566899999999999999997    667799999999999999999


Q ss_pred             HHHHcCCCCeeecCCCCCcEEEecCC---CCCCceEEeeccceeecc
Q 024842          173 KHMHSLEPPYAHNDVKPGNILITCRK---GQPPLAILMDFGSARPAQ  216 (262)
Q Consensus       173 ~~lH~~~~~ivH~dikp~Nill~~~~---~~~~~~kl~Dfg~a~~~~  216 (262)
                      ++||..+  ||||||||+|.||...-   ....-++|+|||.+..+.
T Consensus       808 e~lH~~~--IIHgDiKPDNfll~~~~~~~~~~~~l~lIDfG~siDm~  852 (974)
T KOG1166|consen  808 EHLHAMG--IIHGDIKPDNFLLRREICADSDSKGLYLIDFGRSIDMK  852 (974)
T ss_pred             HHHHhcc--eecccCCcceeEeecccCCCCcccceEEEecccceeee
Confidence            9999999  99999999999995331   123469999999998654

>PRK14879 serine/threonine protein kinase; Provisional

Probab=99.76  E-value=4e-18  Score=133.30  Aligned_cols=136  Identities=18%  Similarity=0.157  Sum_probs=103.3

Q ss_pred             EEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc--------hHHHHHHHHHHHHhhhCC
Q 024842           32 RQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN--------NEQLEMVREEIRVSSLFS  103 (262)
Q Consensus        32 ~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~--------~~~~~~~~~E~~~l~~l~  103 (262)
                      +.||+|++|.||+|.+.  +.                      .+++|+.....        ......+.+|+.++..+.
T Consensus         2 ~~l~~G~~~~vy~~~~~--~~----------------------~~~vK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~   57 (211)
T PRK14879          2 KLIKRGAEAEIYLGDFL--GI----------------------KAVIKWRIPKRYRHPELDERIRRERTRREARIMSRAR   57 (211)
T ss_pred             cccccCceEEEEEEeeC--CC----------------------ceEEEEeCCcCCcChHHHHHHHHHHHHHHHHHHHHHH
Confidence            57899999999999873  22                      45555433211        112345778999999999


Q ss_pred             CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCee
Q 024842          104 HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYA  183 (262)
Q Consensus       104 h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~iv  183 (262)
                      |+++..+..++.          .....+++|+|+.+++|.+++.    ..   .+ ....++.+++.+|.++|+.+  ++
T Consensus        58 ~~~i~~p~~~~~----------~~~~~~lv~e~~~G~~L~~~~~----~~---~~-~~~~i~~~i~~~l~~lH~~~--i~  117 (211)
T PRK14879         58 KAGVNVPAVYFV----------DPENFIIVMEYIEGEPLKDLIN----SN---GM-EELELSREIGRLVGKLHSAG--II  117 (211)
T ss_pred             HCCCCCCeEEEE----------eCCCCEEEEEEeCCcCHHHHHH----hc---cH-HHHHHHHHHHHHHHHHHhCC--cc
Confidence            988876655442          2456789999999999998875    21   12 78889999999999999988  99


Q ss_pred             ecCCCCCcEEEecCCCCCCceEEeeccceeecc
Q 024842          184 HNDVKPGNILITCRKGQPPLAILMDFGSARPAQ  216 (262)
Q Consensus       184 H~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~  216 (262)
                      |+|++|+||+++ ++    .++|+|||++....
T Consensus       118 H~Dl~p~Nil~~-~~----~~~liDf~~a~~~~  145 (211)
T PRK14879        118 HGDLTTSNMILS-GG----KIYLIDFGLAEFSK  145 (211)
T ss_pred             cCCCCcccEEEE-CC----CEEEEECCcccCCC
Confidence            999999999998 33    59999999987643

>PRK12274 serine/threonine protein kinase; Provisional

Probab=99.75  E-value=1.5e-17  Score=126.80  Aligned_cols=133  Identities=17%  Similarity=0.170  Sum_probs=98.3

Q ss_pred             EEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccch----HHHHHHHHHHHHhhhCC-
Q 024842           29 RILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNN----EQLEMVREEIRVSSLFS-  103 (262)
Q Consensus        29 ~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~----~~~~~~~~E~~~l~~l~-  103 (262)
                      .+...|++|+||+|+.+...                        +..++.+.+.....    .....+.+|+++++.++ 
T Consensus         5 ~~~~~l~~~~f~~v~~~~~~------------------------~~k~~~~~l~~~~~~~~~~~~~l~~rE~~iL~~L~~   60 (218)
T PRK12274          5 AVNEPLKSDTFGRILLVRGG------------------------ERKFVRRDLSAAPWWLRGVAWWLARREALALRQLDG   60 (218)
T ss_pred             ccceeecCCCcceEEEeecC------------------------CceeeecccccchhhhhhHHHHHHHHHHHHHHhcCC
Confidence            45678999999999977652                        22444444433322    11225789999999996 


Q ss_pred             CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCee
Q 024842          104 HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYA  183 (262)
Q Consensus       104 h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~iv  183 (262)
                      |+++++++++              ...+++|+|+.+.+|.+...    .      . ...++.|++.+|.++|++|  |+
T Consensus        61 ~~~vP~ll~~--------------~~~~lvmeyI~G~~L~~~~~----~------~-~~~~~~qi~~~L~~lH~~G--Iv  113 (218)
T PRK12274         61 LPRTPRLLHW--------------DGRHLDRSYLAGAAMYQRPP----R------G-DLAYFRAARRLLQQLHRCG--VA  113 (218)
T ss_pred             CCCCCEEEEE--------------cCEEEEEeeecCccHHhhhh----h------h-hHHHHHHHHHHHHHHHHCc--Cc
Confidence            5778888764              23689999999988865321    1      1 1346789999999999999  99


Q ss_pred             ecCC-CCCcEEEecCCCCCCceEEeeccceeecc
Q 024842          184 HNDV-KPGNILITCRKGQPPLAILMDFGSARPAQ  216 (262)
Q Consensus       184 H~di-kp~Nill~~~~~~~~~~kl~Dfg~a~~~~  216 (262)
                      |||| ||+|||++.++    .++|+|||+|....
T Consensus       114 HrDL~kp~NILv~~~g----~i~LIDFG~A~~~~  143 (218)
T PRK12274        114 HNDLAKEANWLVQEDG----SPAVIDFQLAVRGN  143 (218)
T ss_pred             cCCCCCcceEEEcCCC----CEEEEECCCceecC
Confidence            9999 79999998665    69999999998544

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.75  E-value=5.1e-19  Score=163.34  Aligned_cols=148  Identities=15%  Similarity=0.141  Sum_probs=98.8

Q ss_pred             hhCCC-CCccchhhhhHHHhhhccCCCCc-ceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHc
Q 024842          100 SLFSH-RNLLPLLDHAIIAVKANQEGSWK-HEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHS  177 (262)
Q Consensus       100 ~~l~h-~~i~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~  177 (262)
                      +.++| +||..+++.|...    ..+... ..+++++|+ .+++|.+++..   ....+++.+++.++.||+.||.|||+
T Consensus        27 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~e~-~~~~L~~~l~~---~~~~~~~~~~~~i~~qi~~al~~lH~   98 (793)
T PLN00181         27 KSLSHIDYVRSLLGSHKEG----NLDGLDDDSIVRALEC-EDVSLRQWLDN---PDRSVDAFECFHVFRQIVEIVNAAHS   98 (793)
T ss_pred             chhhHHHHHHHhhcccCCc----cccccccchhhhhhcc-CCccHHHHHhc---ccccccHHHHHHHHHHHHHHHHHHHh
Confidence            34455 5777777765210    011222 345556664 57799998862   23559999999999999999999999


Q ss_pred             CCCCeeecCCCCCcEEEecCC---------------CCCCceEEeeccceeecccc---------------------Ccc
Q 024842          178 LEPPYAHNDVKPGNILITCRK---------------GQPPLAILMDFGSARPAQSK---------------------FAL  221 (262)
Q Consensus       178 ~~~~ivH~dikp~Nill~~~~---------------~~~~~~kl~Dfg~a~~~~~~---------------------~~~  221 (262)
                      ++  |+||||||+|||++..+               +....+|++|||+++.....                     ...
T Consensus        99 ~g--IvHrDlKP~NiLl~~~~~~k~~d~~~~~~~~~~~~~~~ki~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (793)
T PLN00181         99 QG--IVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDEDATTKSREIGSSRREEILSERRIEKLEEVKKQPFPMKQILAM  176 (793)
T ss_pred             CC--eeeccCCchhEEEcccCcEEEeeccccCcccccccCcccccccccccccccccccchhhhhccccCCCcccccccC
Confidence            99  99999999999996422               11225788888887643210                     012


Q ss_pred             CcccCCcccchhhhhhhhhhhhhcCcccchheeheecccCC
Q 024842          222 GQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMFGR  262 (262)
Q Consensus       222 ~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~G~  262 (262)
                      +++.|++||.+....+     ....||||+|+++|||++|+
T Consensus       177 gt~~Y~APE~~~~~~~-----~~~sDVwSlGviL~ELl~~~  212 (793)
T PLN00181        177 EMSWYTSPEEDNGSSS-----NCASDVYRLGVLLFELFCPV  212 (793)
T ss_pred             CCcceEChhhhccCCC-----CchhhhhhHHHHHHHHhhCC
Confidence            4555888876543221     23478999999999988764

>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated

Probab=99.74  E-value=1.2e-17  Score=147.62  Aligned_cols=143  Identities=15%  Similarity=0.092  Sum_probs=104.1

Q ss_pred             ceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhc---cchHHHHHHHHHHHHhhhCC
Q 024842           27 RYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLI---QNNEQLEMVREEIRVSSLFS  103 (262)
Q Consensus        27 ~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~---~~~~~~~~~~~E~~~l~~l~  103 (262)
                      .|...+.||+|+||.||++.+.....  +++                 ....|....   ......+.+.+|+++++.++
T Consensus       334 ~~~~~~~iG~G~~g~Vy~~~~~~~~~--v~k-----------------~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~  394 (535)
T PRK09605        334 RKIPDHLIGKGAEADIKKGEYLGRDA--VIK-----------------ERVPKGYRHPELDERLRTERTRAEARLLSEAR  394 (535)
T ss_pred             ccCccceeccCCcEEEEEEeecCccc--eeE-----------------EEecccccchhHHHHHHHHHHHHHHHHHHhhc
Confidence            34567899999999999988754321  111                 001111111   11123456889999999999


Q ss_pred             CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCee
Q 024842          104 HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYA  183 (262)
Q Consensus       104 h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~iv  183 (262)
                      |++++.+.....          .....+++|||+.+++|.+++.            ....++.+++.+|.+||+.+  ++
T Consensus       395 ~~~i~~p~~~~~----------~~~~~~lv~E~~~g~~L~~~l~------------~~~~~~~~i~~~L~~lH~~g--ii  450 (535)
T PRK09605        395 RAGVPTPVIYDV----------DPEEKTIVMEYIGGKDLKDVLE------------GNPELVRKVGEIVAKLHKAG--IV  450 (535)
T ss_pred             ccCCCeeEEEEE----------eCCCCEEEEEecCCCcHHHHHH------------HHHHHHHHHHHHHHHHHhCC--Cc
Confidence            999877654432          2345789999999999988764            24568899999999999998  99


Q ss_pred             ecCCCCCcEEEecCCCCCCceEEeeccceeeccc
Q 024842          184 HNDVKPGNILITCRKGQPPLAILMDFGSARPAQS  217 (262)
Q Consensus       184 H~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~  217 (262)
                      ||||||+||+++ ++    .++|+|||++.....
T Consensus       451 HrDlkp~NILl~-~~----~~~liDFGla~~~~~  479 (535)
T PRK09605        451 HGDLTTSNFIVR-DD----RLYLIDFGLGKYSDL  479 (535)
T ss_pred             cCCCChHHEEEE-CC----cEEEEeCcccccCCc
Confidence            999999999994 33    599999999987543

>COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

Probab=99.74  E-value=2.8e-17  Score=135.96  Aligned_cols=191  Identities=31%  Similarity=0.442  Sum_probs=141.1

Q ss_pred             eEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccch---HHHHHHHHHHHHhhhCCC
Q 024842           28 YRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNN---EQLEMVREEIRVSSLFSH  104 (262)
Q Consensus        28 y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~---~~~~~~~~E~~~l~~l~h  104 (262)
                      |.+.+.||.|+|+.||++.+.                         ..+++|.+.....   .....+.+|+.+++.+.|
T Consensus         2 ~~~~~~l~~g~~~~v~~~~~~-------------------------~~~~~k~~~~~~~~~~~~~~~~~~e~~~~~~~~~   56 (384)
T COG0515           2 YRILRKLGEGSFGEVYLARDR-------------------------KLVALKVLAKKLESKSKEVERFLREIQILASLNH   56 (384)
T ss_pred             ceeEEeecCCCCeEEEEEEec-------------------------cEEEEEeechhhccchhHHHHHHHHHHHHHHccC
Confidence            788999999999999999987                         1455555544321   246788899999999998


Q ss_pred             C-CccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCee
Q 024842          105 R-NLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYA  183 (262)
Q Consensus       105 ~-~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~iv  183 (262)
                      + +++++...+.          .....+++++++.++++.+++...... ..++......++.|++.++.++|+.+  ++
T Consensus        57 ~~~i~~~~~~~~----------~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~H~~~--~~  123 (384)
T COG0515          57 PPNIVKLYDFFQ----------DEGSLYLVMEYVDGGSLEDLLKKIGRK-GPLSESEALFILAQILSALEYLHSKG--II  123 (384)
T ss_pred             CcceeeEEEEEe----------cCCEEEEEEecCCCCcHHHHHHhcccc-cCCCHHHHHHHHHHHHHHHHHHHhCC--ee
Confidence            8 7999988872          234479999999999999665421110 26899999999999999999999999  99


Q ss_pred             ecCCCCCcEEEecCCCCCCceEEeeccceeecccc-----------CccCcccCCcccchhhhhhhhhhhhhcCcccchh
Q 024842          184 HNDVKPGNILITCRKGQPPLAILMDFGSARPAQSK-----------FALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQ  252 (262)
Q Consensus       184 H~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~-----------~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g  252 (262)
                      |||+||+||+++..+.   .++++|||.+......           ...++..|.+|+.+....  ........|+|++|
T Consensus       124 hrd~kp~nil~~~~~~---~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~t~~~~~pe~~~~~~--~~~~~~~~D~~s~g  198 (384)
T COG0515         124 HRDIKPENILLDRDGR---VVKLIDFGLAKLLPDPGSTSSIPALPSTSVGTPGYMAPEVLLGLS--LAYASSSSDIWSLG  198 (384)
T ss_pred             ccCCCHHHeeecCCCC---eEEEeccCcceecCCCCccccccccccccccccccCCHHHhcCCC--CCCCCchHhHHHHH
Confidence            9999999999976552   4899999998754432           234566677776664421  01112235777888


Q ss_pred             eeheecccC
Q 024842          253 ILMRELMFG  261 (262)
Q Consensus       253 ~~~~~l~~G  261 (262)
                      ++++++++|
T Consensus       199 ~~~~~~~~~  207 (384)
T COG0515         199 ITLYELLTG  207 (384)
T ss_pred             HHHHHHHhC
Confidence            777776665

>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain

Probab=99.74  E-value=8.5e-18  Score=130.11  Aligned_cols=161  Identities=12%  Similarity=0.025  Sum_probs=100.1

Q ss_pred             CceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCCCC
Q 024842           26 NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSHR  105 (262)
Q Consensus        26 ~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~h~  105 (262)
                      ..|.+.+.||+|+||.||++.+. +++.+++|....-.............+..+...............|..++..+.|+
T Consensus        15 ~~~~~~~~i~~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~   93 (198)
T cd05144          15 VVESLGNQIGVGKESDVYLALDP-DGNPVALKFHRLGRTSFRKVKRKRDYLGDRKHASWLYLSRLAAQKEFAALKALYEE   93 (198)
T ss_pred             chhhcCCccccCcceEEEEEEcC-CCCEEEEEEEecccchhhhhcchHHHHhccccchhHHHhHHHHHHHHHHHHHHHHc
Confidence            35888999999999999999875 45544333110000000000000000000000000011122356788888888776


Q ss_pred             C--ccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCee
Q 024842          106 N--LLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYA  183 (262)
Q Consensus       106 ~--i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~iv  183 (262)
                      +  +++.+.              ....+++||++.+++|.+...          ......++.+++.++.++|+.+  ++
T Consensus        94 ~i~v~~~~~--------------~~~~~lv~e~~~g~~L~~~~~----------~~~~~~~~~~i~~~l~~lh~~g--i~  147 (198)
T cd05144          94 GFPVPKPID--------------WNRHAVVMEYIDGVELYRVRV----------LEDPEEVLDEILEEIVKAYKHG--II  147 (198)
T ss_pred             CCCCCceee--------------cCCceEEEEEeCCcchhhccc----------cccHHHHHHHHHHHHHHHHHCC--CC
Confidence            4  332222              234589999999998876432          0345678899999999999988  99


Q ss_pred             ecCCCCCcEEEecCCCCCCceEEeeccceeeccc
Q 024842          184 HNDVKPGNILITCRKGQPPLAILMDFGSARPAQS  217 (262)
Q Consensus       184 H~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~  217 (262)
                      |+||+|+||+++.++    .++|+|||.+.....
T Consensus       148 H~Dl~p~Nill~~~~----~~~liDfg~~~~~~~  177 (198)
T cd05144         148 HGDLSEFNILVDDDE----KIYIIDWPQMVSTDH  177 (198)
T ss_pred             cCCCCcccEEEcCCC----cEEEEECCccccCCC
Confidence            999999999998665    699999999865443

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom

>TIGR03724 arch_bud32 Kae1-associated kinase Bud32

Probab=99.72  E-value=2.6e-17  Score=127.49  Aligned_cols=132  Identities=17%  Similarity=0.181  Sum_probs=96.8

Q ss_pred             EeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc--------chHHHHHHHHHHHHhhhCCC
Q 024842           33 QLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ--------NNEQLEMVREEIRVSSLFSH  104 (262)
Q Consensus        33 ~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~--------~~~~~~~~~~E~~~l~~l~h  104 (262)
                      .||+|++|.||+|.+..  .                      .+++|.....        ......++.+|+++++.++|
T Consensus         1 ~ig~G~~~~vy~~~~~~--~----------------------~~viK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~   56 (199)
T TIGR03724         1 LIAKGAEAIIYLGDFLG--L----------------------KAVIKERVPKSYRHPELDERIRRERTRNEARLLSRARK   56 (199)
T ss_pred             CCCCCceEEEEEeecCC--c----------------------cEEEEEecCCcCcCchHHHHHHHHHHHHHHHHHHHHHH
Confidence            37999999999998532  2                      4555543221        11123567789999999988


Q ss_pred             CCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeee
Q 024842          105 RNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAH  184 (262)
Q Consensus       105 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH  184 (262)
                      +++..+.-.+          ......+++|+++.+++|.+++.    ...    .   .++.+++.+|.++|+.+  ++|
T Consensus        57 ~~i~~p~~~~----------~~~~~~~lv~e~~~g~~l~~~~~----~~~----~---~~~~~i~~~l~~lH~~g--i~H  113 (199)
T TIGR03724        57 AGVNTPVVYD----------VDPDNKTIVMEYIEGKPLKDVIE----EGN----D---ELLREIGRLVGKLHKAG--IVH  113 (199)
T ss_pred             CCCCCCEEEE----------EECCCCEEEEEEECCccHHHHHh----hcH----H---HHHHHHHHHHHHHHHCC--eec
Confidence            7654443222          11345689999999999988764    111    1   77899999999999998  999


Q ss_pred             cCCCCCcEEEecCCCCCCceEEeeccceeecc
Q 024842          185 NDVKPGNILITCRKGQPPLAILMDFGSARPAQ  216 (262)
Q Consensus       185 ~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~  216 (262)
                      +|++|+||+++ ++    .++++|||++....
T Consensus       114 ~Dl~~~Nil~~-~~----~~~liDfg~a~~~~  140 (199)
T TIGR03724       114 GDLTTSNIIVR-DD----KLYLIDFGLGKYSD  140 (199)
T ss_pred             CCCCcceEEEE-CC----cEEEEECCCCcCCC
Confidence            99999999998 43    59999999987654

Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.71  E-value=2.9e-17  Score=145.35  Aligned_cols=191  Identities=20%  Similarity=0.246  Sum_probs=139.7

Q ss_pred             EEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhh-hccch-HHHHHHHHHHHHhhhCCCCC
Q 024842           29 RILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKV-LIQNN-EQLEMVREEIRVSSLFSHRN  106 (262)
Q Consensus        29 ~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~-~~~~~-~~~~~~~~E~~~l~~l~h~~  106 (262)
                      .....+|.|.+|.|+.+......+....+                 .+.++ . ..... .....+..|..+-..+.|+|
T Consensus       321 ~~~~~~g~ga~g~~~~~~~~~~~~~~~~~-----------------~~r~~-~~~~~s~~~~~~~i~sE~~i~~~l~h~~  382 (601)
T KOG0590|consen  321 KPGRVLGSGAYGSVRIAKRRSDLKSFPEK-----------------EFRVR-VKPTESERKYNYNITSEFCIGSSLSHPN  382 (601)
T ss_pred             CccceeeecccCceEEEEecCCCccchhh-----------------hhhcc-cCCcccHHHHhhhhhhheeecccccCCc
Confidence            56778899999988888777665543332                 22222 1 11111 11222666777788899999


Q ss_pred             ccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeeecC
Q 024842          107 LLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHND  186 (262)
Q Consensus       107 i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~d  186 (262)
                      ++........          ....+..|||++. +|..++.    ....+....+..++.|++.|+.|+|+.|  +.|||
T Consensus       383 ~~e~l~~~~~----------~~~~~~~mE~~~~-Dlf~~~~----~~~~~~~~e~~c~fKqL~~Gv~y~h~~G--iahrd  445 (601)
T KOG0590|consen  383 IIETLDIVQE----------IDGILQSMEYCPY-DLFSLVM----SNGKLTPLEADCFFKQLLRGVKYLHSMG--LAHRD  445 (601)
T ss_pred             hhhhHHHHhh----------cccchhhhhcccH-HHHHHHh----cccccchhhhhHHHHHHHHHHHHHHhcC--ceecc
Confidence            9888777642          3334444999999 9999886    4456899999999999999999999999  99999


Q ss_pred             CCCCcEEEecCCCCCCceEEeeccceeecccc---------CccCcccCCcccchhhhhhhhhhhhhcCcccchheehee
Q 024842          187 VKPGNILITCRKGQPPLAILMDFGSARPAQSK---------FALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRE  257 (262)
Q Consensus       187 ikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~---------~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~  257 (262)
                      +||+|+++..++    .+||+|||.+....-+         ...++..|.+||-+-...+...    .-|+|+.|+++..
T Consensus       446 lK~enll~~~~g----~lki~Dfg~~~vf~~~~e~~~~~~~g~~gS~pY~apE~~~~~~ydpr----~vDiwS~~ii~~~  517 (601)
T KOG0590|consen  446 LKLENLLVTENG----ILKIIDFGAASVFRYPWEKNIHESSGIVGSDPYLAPEVLTGKEYDPR----AVDVWSCGIIYIC  517 (601)
T ss_pred             CccccEEEecCC----ceEEeecCcceeeccCcchhhhhhcCcccCCcCcCcccccccccCcc----hhhhhhccceEEE
Confidence            999999998887    7999999998754322         2357788888877654443322    2589999999999


Q ss_pred             cccCC
Q 024842          258 LMFGR  262 (262)
Q Consensus       258 l~~G~  262 (262)
                      |.+||
T Consensus       518 m~~~~  522 (601)
T KOG0590|consen  518 MILGR  522 (601)
T ss_pred             EecCC
Confidence            98885

>PF14531 Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_A 3Q5Z_A 3Q60_A

Probab=99.69  E-value=1.7e-16  Score=127.09  Aligned_cols=207  Identities=22%  Similarity=0.281  Sum_probs=115.9

Q ss_pred             ceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc---chHHHHHHHHHHHHhhhCC
Q 024842           27 RYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ---NNEQLEMVREEIRVSSLFS  103 (262)
Q Consensus        27 ~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~---~~~~~~~~~~E~~~l~~l~  103 (262)
                      ++...+.||.|+++.||.+++..+++                      .+++|+....   .....+++++|.-....+.
T Consensus        13 ~l~~~~~i~~g~~~~v~~v~d~~t~~----------------------~~avkvf~~~~~~~~~~~~~~~~e~l~~~~~~   70 (288)
T PF14531_consen   13 TLVRGRIIGKGGFSIVFEVTDVETGE----------------------EFAVKVFLLPADASANEYEQLKEEQLAITLFP   70 (288)
T ss_dssp             EEEEEEEEEEETTEEEEEEEETTTTE----------------------EEEEEEEEESSTTHTTHHHHHHHHHHGGGGST
T ss_pred             EEEEccccccCCceEEEEEEEccCCc----------------------eEEEEEEecccccchHHHHHHHHHHHHhhhhc
Confidence            57889999999999999999999877                      4566554433   2233466666655444433


Q ss_pred             C---C-------CccchhhhhHHH----hhhccCCCCc---ceeEEEEeecCCCchhhHHHHhhhcCCC---CCHHHHHH
Q 024842          104 H---R-------NLLPLLDHAIIA----VKANQEGSWK---HEAYLLFPVHLDGTLLDHAKVMQTKKEF---FSTSDVLQ  163 (262)
Q Consensus       104 h---~-------~i~~~~~~~~~~----~~~~~~~~~~---~~~~~v~~~~~~~~L~~~~~~~~~~~~~---~~~~~~~~  163 (262)
                      +   |       .++..++.....    +-....+...   ...+++|+- ..++|.+++.........   ........
T Consensus        71 ~~~~p~~a~~~~r~l~P~d~~~i~~~~~~~~~~~~~~~~~v~n~~~l~P~-~~~dL~~~~~~l~~~~~~~~~l~~~arl~  149 (288)
T PF14531_consen   71 GVKNPKEAYRHLRFLVPLDLLRIPGKPPFFERGPGQSIYWVLNRFLLMPR-AQGDLQDLVEALFSRAQTHSPLAFAARLS  149 (288)
T ss_dssp             T--SHHHHHHHH-B---SEEEEETTS-SEEEECETTEEEEEESEEEEEE---SEEHHHHHHHHHHHTTTSHHHHHHHHHH
T ss_pred             cCCCHHHHHHhceEEeeeEEEEEcCCCcceecCCCCccceeehhhhccch-hhhcHHHHHHHHhhcccccchhHHHHHHH
Confidence            2   1       111111111000    0000000011   134667774 467888887655444322   33334456


Q ss_pred             HHHHHHHHHHHHHcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccCc--cCcccCCcccchhhhh---hh
Q 024842          164 IFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKFA--LGQRRYSCRNGLLSIV---LH  238 (262)
Q Consensus       164 i~~ql~~~l~~lH~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~~--~~~~~~~~~~d~~s~g---~~  238 (262)
                      ++.|++..+++||..|  ++|+||+|+|++++.++    .+.|+||+..........  ..+..+++||-.-..+   -.
T Consensus       150 lT~Q~I~lvA~Lh~~G--lVHgdi~~~nfll~~~G----~v~Lg~F~~~~r~g~~~~~~~~~~~~~PPe~~~~~~~~~~~  223 (288)
T PF14531_consen  150 LTVQMIRLVANLHSYG--LVHGDIKPENFLLDQDG----GVFLGDFSSLVRAGTRYRCSEFPVAFTPPELESCAGQFGQN  223 (288)
T ss_dssp             HHHHHHHHHHHHHHTT--EEEST-SGGGEEE-TTS-----EEE--GGGEEETTEEEEGGGS-TTTS-HHHHHHHTSCHHS
T ss_pred             HHHHHHHHHHHHhhcc--eEecccceeeEEEcCCC----CEEEcChHHHeecCceeeccCCCcccCChhhhhhhcccCcc
Confidence            6789999999999999  99999999999999888    699999998876654332  2223344444221110   01


Q ss_pred             hhhhhhcCcccchheeheecccCC
Q 024842          239 LSELLSCGTVRVIQILMRELMFGR  262 (262)
Q Consensus       239 ~~e~~~~~~v~~~g~~~~~l~~G~  262 (262)
                      ...+....|.|.+|+++|.|+||+
T Consensus       224 ~~~~t~~~DaW~LG~~ly~lWC~~  247 (288)
T PF14531_consen  224 NAPYTFATDAWQLGITLYSLWCGR  247 (288)
T ss_dssp             EEEE-HHHHHHHHHHHHHHHHHSS
T ss_pred             cceeeeccCHHHHHHHHHHHHHcc
Confidence            111122346777777777776664

>cd05119 RIO RIO kinase family, catalytic domain

Probab=99.67  E-value=2.2e-16  Score=121.08  Aligned_cols=76  Identities=16%  Similarity=0.177  Sum_probs=58.8

Q ss_pred             eeEEEEeecCCCchhh-HHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHc-CCCCeeecCCCCCcEEEecCCCCCCceEE
Q 024842          129 EAYLLFPVHLDGTLLD-HAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHS-LEPPYAHNDVKPGNILITCRKGQPPLAIL  206 (262)
Q Consensus       129 ~~~~v~~~~~~~~L~~-~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~-~~~~ivH~dikp~Nill~~~~~~~~~~kl  206 (262)
                      ..+++||++.++++.. .+..   ..  . ...+..++.+++.++.++|. .+  ++|+||||+||+++ ++    .++|
T Consensus        89 ~~~lv~e~~~g~~~~~~~l~~---~~--~-~~~~~~~~~~~~~~l~~lh~~~~--ivH~Dl~p~Nili~-~~----~~~l  155 (187)
T cd05119          89 RHVLVMEFIGGDGIPAPRLKD---VR--L-LEDPEELYDQILELMRKLYREAG--LVHGDLSEYNILVD-DG----KVYI  155 (187)
T ss_pred             CCEEEEEEeCCCCccChhhhh---hh--h-cccHHHHHHHHHHHHHHHhhccC--cCcCCCChhhEEEE-CC----cEEE
Confidence            4689999999855432 1111   00  1 16678899999999999999 88  99999999999998 44    5999


Q ss_pred             eeccceeeccc
Q 024842          207 MDFGSARPAQS  217 (262)
Q Consensus       207 ~Dfg~a~~~~~  217 (262)
                      +|||.+.....
T Consensus       156 iDfg~a~~~~~  166 (187)
T cd05119         156 IDVPQAVEIDH  166 (187)
T ss_pred             EECcccccccC
Confidence            99999976554

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct

>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed

Probab=99.64  E-value=1.9e-15  Score=119.94  Aligned_cols=107  Identities=16%  Similarity=0.137  Sum_probs=79.1

Q ss_pred             HHHHHHHHHHhhhCCCCCc--cchhhhhHHHhhhccCCCCcceeEEEEeecCC-CchhhHHHHhhhcCCCCCHHHHHHHH
Q 024842           89 LEMVREEIRVSSLFSHRNL--LPLLDHAIIAVKANQEGSWKHEAYLLFPVHLD-GTLLDHAKVMQTKKEFFSTSDVLQIF  165 (262)
Q Consensus        89 ~~~~~~E~~~l~~l~h~~i--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~L~~~~~~~~~~~~~~~~~~~~~i~  165 (262)
                      ...+.+|+.++..++|+++  +++++....      ........+++|+++.+ .+|.+++.     ...+++..    +
T Consensus        84 ~~r~~rE~~ll~~L~~~gi~vP~pl~~~~~------~~~~~~~~~lV~e~l~G~~~L~~~l~-----~~~l~~~~----~  148 (239)
T PRK01723         84 RTRAFAEFRLLAQLYEAGLPVPRPIAARVV------RHGLFYRADILIERIEGARDLVALLQ-----EAPLSEEQ----W  148 (239)
T ss_pred             hhHHHHHHHHHHHHHhCCCCCceeEeeeee------ecCcceeeeEEEEecCCCCCHHHHHh-----cCCCCHHH----H
Confidence            3567889999999988775  555544321      01112234699999987 68887764     22355543    5


Q ss_pred             HHHHHHHHHHHcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeecc
Q 024842          166 YQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQ  216 (262)
Q Consensus       166 ~ql~~~l~~lH~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~  216 (262)
                      .+++.+|.+||++|  |+|+||||+|||++.++    .++|+|||.+....
T Consensus       149 ~~i~~~l~~lH~~G--I~HrDlkp~NILv~~~~----~v~LIDfg~~~~~~  193 (239)
T PRK01723        149 QAIGQLIARFHDAG--VYHADLNAHNILLDPDG----KFWLIDFDRGELRT  193 (239)
T ss_pred             HHHHHHHHHHHHCC--CCCCCCCchhEEEcCCC----CEEEEECCCcccCC
Confidence            68999999999999  99999999999998665    69999999997754

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.63  E-value=1.2e-16  Score=143.73  Aligned_cols=164  Identities=26%  Similarity=0.306  Sum_probs=118.9

Q ss_pred             CCCcccchhhhhccCCCCCceeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehh
Q 024842            1 MGCSLSGLNALYDSVNGGGDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKK   80 (262)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~   80 (262)
                      ||.+.|+.-..+.......+...   ++...+.||.+.|=.|.+|++..+                        .+++|+
T Consensus         1 MGnqls~~sQi~~~e~yfsd~~~---e~~~~~~LGstRFlKv~r~k~~eG------------------------~vVvKV   53 (1431)
T KOG1240|consen    1 MGNQLSLPSQISPVEVYFSDLSV---ECHYVENLGSTRFLKVARAKDREG------------------------LVVVKV   53 (1431)
T ss_pred             CCcccccccccchHHHHhhcCcc---ceeeecccCchhhhhhhhccCCCc------------------------eEEEEE
Confidence            88888873333333333333222   689999999999999999998643                        567776


Q ss_pred             hhccc----hHHHHHHHHHHHHhhhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCC
Q 024842           81 VLIQN----NEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFF  156 (262)
Q Consensus        81 ~~~~~----~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~  156 (262)
                      +....    -....+...|+. ...+++||.+++..+-+.          ....|++=+| ..-+|+|.+.    .+..+
T Consensus        54 Fvk~~p~~sL~~~~qrL~~ik-~~l~~~pn~lPfqk~~~t----------~kAAylvRqy-vkhnLyDRlS----TRPFL  117 (1431)
T KOG1240|consen   54 FVKQDPTISLRPFKQRLEEIK-FALMKAPNCLPFQKVLVT----------DKAAYLVRQY-VKHNLYDRLS----TRPFL  117 (1431)
T ss_pred             EeccCCCCCchHHHHHHHHHH-HHhhcCCcccchHHHHHh----------hHHHHHHHHH-Hhhhhhhhhc----cchHH
Confidence            65443    223344444555 666789999999877532          3334444454 3457887775    55557


Q ss_pred             CHHHHHHHHHHHHHHHHHHHcCCCCeeecCCCCCcEEEecCCCCCCceEEeecccee
Q 024842          157 STSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSAR  213 (262)
Q Consensus       157 ~~~~~~~i~~ql~~~l~~lH~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~  213 (262)
                      ...+.+-++.||+.||.-+|..|  |+|||||.+|||+++.+    ++.|+||..-+
T Consensus       118 ~~iEKkWiaFQLL~al~qcH~~g--VcHGDIKsENILiTSWN----W~~LtDFAsFK  168 (1431)
T KOG1240|consen  118 VLIEKKWIAFQLLKALSQCHKLG--VCHGDIKSENILITSWN----WLYLTDFASFK  168 (1431)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcC--ccccccccceEEEeeec----hhhhhcccccC
Confidence            88889999999999999999999  99999999999998887    89999998654

>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family

Probab=99.63  E-value=2.2e-15  Score=111.08  Aligned_cols=134  Identities=23%  Similarity=0.247  Sum_probs=103.0

Q ss_pred             EEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCCC--CCc
Q 024842           30 ILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSH--RNL  107 (262)
Q Consensus        30 ~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~h--~~i  107 (262)
                      +.+.|++|.++.||++....                        ..+++|.......  ...+..|+..++.+++  ..+
T Consensus         2 ~~~~i~~g~~~~v~~~~~~~------------------------~~~~iK~~~~~~~--~~~~~~e~~~~~~l~~~~~~~   55 (155)
T cd05120           2 SIKLLKGGLTNRVYLLGTKD------------------------EDYVLKINPSREK--GADREREVAILQLLARKGLPV   55 (155)
T ss_pred             cceecccccccceEEEEecC------------------------CeEEEEecCCCCc--hhHHHHHHHHHHHHHHcCCCC
Confidence            45789999999999999743                        2577777654433  4567889999998876  477


Q ss_pred             cchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCC-CCeeecC
Q 024842          108 LPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLE-PPYAHND  186 (262)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~-~~ivH~d  186 (262)
                      ++++...          ...+..+++|+++.+.++..+           +......++.+++.+++.+|... .+++|+|
T Consensus        56 p~~~~~~----------~~~~~~~~v~e~~~g~~~~~~-----------~~~~~~~~~~~~~~~l~~lh~~~~~~i~H~D  114 (155)
T cd05120          56 PKVLASG----------ESDGWSYLLMEWIEGETLDEV-----------SEEEKEDIAEQLAELLAKLHQLPLLVLCHGD  114 (155)
T ss_pred             CeEEEEc----------CCCCccEEEEEecCCeecccC-----------CHHHHHHHHHHHHHHHHHHhCCCceEEEecC
Confidence            7777655          223578999999888777543           44566778899999999999841 2399999


Q ss_pred             CCCCcEEEecCCCCCCceEEeeccceee
Q 024842          187 VKPGNILITCRKGQPPLAILMDFGSARP  214 (262)
Q Consensus       187 ikp~Nill~~~~~~~~~~kl~Dfg~a~~  214 (262)
                      ++|+||+++..+    .++++|||.+..
T Consensus       115 l~~~Nil~~~~~----~~~l~Df~~~~~  138 (155)
T cd05120         115 LHPGNILVDDGK----ILGIIDWEYAGY  138 (155)
T ss_pred             CCcceEEEECCc----EEEEEecccccC
Confidence            999999998644    699999999864

The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves

>smart00750 KIND kinase non-catalytic C-lobe domain

Probab=99.62  E-value=5.6e-16  Score=117.55  Aligned_cols=101  Identities=18%  Similarity=0.172  Sum_probs=80.9

Q ss_pred             CchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC
Q 024842          140 GTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF  219 (262)
Q Consensus       140 ~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~  219 (262)
                      |+|.+++..   .+..+++.+++.++.|++.||.|||+.+        ||+||+++.++    .+++  ||++.......
T Consensus         1 GsL~~~l~~---~~~~l~~~~~~~i~~qi~~~L~~lH~~~--------kp~Nil~~~~~----~~~~--fG~~~~~~~~~   63 (176)
T smart00750        1 VSLADILEV---RGRPLNEEEIWAVCLQCLRALRELHRQA--------KSGNILLTWDG----LLKL--DGSVAFKTPEQ   63 (176)
T ss_pred             CcHHHHHHH---hCCCCCHHHHHHHHHHHHHHHHHHHhcC--------CcccEeEcCcc----ceee--ccceEeecccc
Confidence            578887752   2456999999999999999999999865        99999998766    5888  99998877666


Q ss_pred             ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecccCC
Q 024842          220 ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMFGR  262 (262)
Q Consensus       220 ~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~G~  262 (262)
                      ..++..|++||.+....+.     ...||||+|+++|||++|+
T Consensus        64 ~~g~~~y~aPE~~~~~~~~-----~~~DiwSlG~il~elltg~  101 (176)
T smart00750       64 SRVDPYFMAPEVIQGQSYT-----EKADIYSLGITLYEALDYE  101 (176)
T ss_pred             CCCcccccChHHhcCCCCc-----chhhHHHHHHHHHHHHhCC
Confidence            6788889999876443222     3478888888888888875

It is an interaction domain identified as being similar to the C-terminal protein kinase catalytic fold (C lobe). Its presence at the N terminus of signalling proteins and the absence of the active-site residues in the catalytic and activation loops suggest that it folds independently and is likely to be non-catalytic. The occurrence of KIND only in metazoa implies that it has evolved from the catalytic protein kinase domain into an interaction domain possibly by keeping the substrate-binding features

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=99.61  E-value=2.7e-17  Score=140.35  Aligned_cols=182  Identities=25%  Similarity=0.311  Sum_probs=140.9

Q ss_pred             eecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccch--HHHHHHHHHHHHhhhCC-CCCccch
Q 024842           34 LGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNN--EQLEMVREEIRVSSLFS-HRNLLPL  110 (262)
Q Consensus        34 ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~--~~~~~~~~E~~~l~~l~-h~~i~~~  110 (262)
                      +|+|.+|.|++++......                   .+..+++|.......  ........|-.++...+ ||.++++
T Consensus         2 lg~g~~gkvfLvrk~~g~d-------------------a~~~yamkvl~k~t~~~~~~~~t~~er~il~~~~~~~f~v~l   62 (612)
T KOG0603|consen    2 LGQGSYGKVFLVRKAGGAD-------------------AGHLYAMKVLKKATLKVRDRTHTKQERIILAFVHNTPFLVKL   62 (612)
T ss_pred             CCcCCCcchHHHHHhcccc-------------------ccchhhhhcccccccccccccccccHHHHHhhccCCCceeee
Confidence            6899999999877543322                   344566665543311  11124455667777776 9999999


Q ss_pred             hhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeeecCCCCC
Q 024842          111 LDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPG  190 (262)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~dikp~  190 (262)
                      .-.+          +.....++++++..++.+...+.    ....+.+.....+...++.+++++|+.+  ++|+|+|++
T Consensus        63 hyaf----------qt~~kl~l~ld~~rgg~lft~l~----~~~~f~~~~~~~~~aelaLald~lh~l~--iiyrd~k~e  126 (612)
T KOG0603|consen   63 HYAF----------QTDGKLYLILDFLRGGDLFTRLS----KEVMFDELDVAFYLAELALALDHLHKLG--IAYRDYKLE  126 (612)
T ss_pred             eeee----------ccccchhHhhhhcccchhhhccc----cCCchHHHHHHHHHHHHHHHHhhcchhH--HHHhccccc
Confidence            8887          55788999999999999987765    4555888888889999999999999999  999999999


Q ss_pred             cEEEecCCCCCCceEEeeccceeeccc-cCccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecccC
Q 024842          191 NILITCRKGQPPLAILMDFGSARPAQS-KFALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMFG  261 (262)
Q Consensus       191 Nill~~~~~~~~~~kl~Dfg~a~~~~~-~~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~G  261 (262)
                      ||+++.+|    .+++.|||+++..-. ....++..|++|+.+.  |..     ...|-|++|++++||++|
T Consensus       127 nilld~~G----hi~~tdfglske~v~~~~~cgt~eymApEI~~--gh~-----~a~D~ws~gvl~felltg  187 (612)
T KOG0603|consen  127 NVLLLLEG----HIKLTDFGLSKEAVKEKIACGTYEYRAPEIIN--GHL-----SAADWWSFGVLAFELLTG  187 (612)
T ss_pred             ceeecccC----ccccCCchhhhHhHhhhhcccchhhhhhHhhh--ccC-----CcccchhhhhhHHHHhhC
Confidence            99999888    799999999987543 3336788999988875  322     236899999999999988

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.53  E-value=8.2e-15  Score=113.84  Aligned_cols=183  Identities=16%  Similarity=0.175  Sum_probs=133.5

Q ss_pred             ecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc--hHHHHHHHHHHHHhh
Q 024842           23 INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN--NEQLEMVREEIRVSS  100 (262)
Q Consensus        23 ~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~--~~~~~~~~~E~~~l~  100 (262)
                      ++-.+..+..+|.....|+.|+|+|+..                        .++.|++....  .....+|.+|.-.++
T Consensus       187 id~~~lnl~tkl~e~hsgelwrgrwqgn------------------------divakil~vr~~t~risrdfneefp~lr  242 (448)
T KOG0195|consen  187 IDVSSLNLITKLAESHSGELWRGRWQGN------------------------DIVAKILNVREVTARISRDFNEEFPALR  242 (448)
T ss_pred             cchhhhhhhhhhccCCCcccccccccCc------------------------chhhhhhhhhhcchhhcchhhhhCccee
Confidence            3345677888899999999999999854                        34555544332  222357888999999


Q ss_pred             hCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCC
Q 024842          101 LFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEP  180 (262)
Q Consensus       101 ~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~  180 (262)
                      .+.||||+++++.+          +....+.++..|++.++|++.+..  .........++.+++.+++.|++|||+..+
T Consensus       243 ifshpnilpvlgac----------nsppnlv~isq~mp~gslynvlhe--~t~vvvd~sqav~faldiargmaflhslep  310 (448)
T KOG0195|consen  243 IFSHPNILPVLGAC----------NSPPNLVIISQYMPFGSLYNVLHE--QTSVVVDHSQAVRFALDIARGMAFLHSLEP  310 (448)
T ss_pred             eecCCchhhhhhhc----------cCCCCceEeeeeccchHHHHHHhc--CccEEEecchHHHHHHHHHhhHHHHhhcch
Confidence            99999999999998          446778999999999999998862  233457888999999999999999999877


Q ss_pred             CeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccCccCcccCCcc--------------cchhhhhhhhhhhhhc
Q 024842          181 PYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKFALGQRRYSCR--------------NGLLSIVLHLSELLSC  245 (262)
Q Consensus       181 ~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~--------------~d~~s~g~~~~e~~~~  245 (262)
                      .|..-.|....++++.+-.-  .+..+|--++.+....  .-.+.|.+|              .|+||+.+.+||+.++
T Consensus       311 ~ipr~~lns~hvmidedlta--rismad~kfsfqe~gr--~y~pawmspealqrkped~n~raadmwsfaillwel~tr  385 (448)
T KOG0195|consen  311 MIPRFYLNSKHVMIDEDLTA--RISMADTKFSFQEVGR--AYSPAWMSPEALQRKPEDLNIRAADMWSFAILLWELNTR  385 (448)
T ss_pred             hhhhhhcccceEEecchhhh--heecccceeeeecccc--ccCcccCCHHHHhcCchhcchhhhhHHHHHHHHHHhhcc
Confidence            66667889999999877521  3445565555432221  112233333              3678888888887764

>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase

Probab=99.44  E-value=7.3e-13  Score=113.93  Aligned_cols=80  Identities=20%  Similarity=0.186  Sum_probs=59.3

Q ss_pred             cceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHH-HHHHHHcCCCCeeecCCCCCcEEEecCCCCCCceE
Q 024842          127 KHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICA-GLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAI  205 (262)
Q Consensus       127 ~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~-~l~~lH~~~~~ivH~dikp~Nill~~~~~~~~~~k  205 (262)
                      ....+++|||+.+.+|.+......   ....   ...++.+++. .+..+|..|  ++|+|+||.||++..++    .++
T Consensus       230 ~~~~vLvmE~i~G~~L~~~~~~~~---~~~~---~~~ia~~~~~~~l~ql~~~g--~~H~D~hPgNilv~~~g----~i~  297 (437)
T TIGR01982       230 TSERVLTMEWIDGIPLSDIAALDE---AGLD---RKALAENLARSFLNQVLRDG--FFHADLHPGNIFVLKDG----KII  297 (437)
T ss_pred             cCCceEEEEeECCcccccHHHHHh---cCCC---HHHHHHHHHHHHHHHHHhCC--ceeCCCCcccEEECCCC----cEE
Confidence            445799999999999988764211   1122   2344555554 467788888  99999999999997766    699


Q ss_pred             Eeeccceeecccc
Q 024842          206 LMDFGSARPAQSK  218 (262)
Q Consensus       206 l~Dfg~a~~~~~~  218 (262)
                      |+|||++..+++.
T Consensus       298 liDfG~~~~l~~~  310 (437)
T TIGR01982       298 ALDFGIVGRLSEE  310 (437)
T ss_pred             EEeCCCeeECCHH
Confidence            9999999877643

This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.

>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed

Probab=99.40  E-value=8.9e-13  Score=114.99  Aligned_cols=82  Identities=21%  Similarity=0.342  Sum_probs=59.2

Q ss_pred             cceeEEEEeecCCCchhhHHHHhhhcC---CCCCHHHHHHHHHHHHHHHHHHHcCCCCeeecCCCCCcEEEecCCCCCCc
Q 024842          127 KHEAYLLFPVHLDGTLLDHAKVMQTKK---EFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPL  203 (262)
Q Consensus       127 ~~~~~~v~~~~~~~~L~~~~~~~~~~~---~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~dikp~Nill~~~~~~~~~  203 (262)
                      ....+++|||+.|+++.+.... ...+   ..+.+..+..++.|++       ..|  ++|+|+||.||+++.+++..+.
T Consensus       233 st~~VLvmE~i~G~~l~d~~~l-~~~g~d~~~la~~~v~~~~~Qif-------~~G--ffHaDpHPGNIlv~~~g~~~~~  302 (537)
T PRK04750        233 CSETVMVMERMYGIPVSDVAAL-RAAGTDMKLLAERGVEVFFTQVF-------RDG--FFHADMHPGNIFVSYDPPENPR  302 (537)
T ss_pred             CCCceEEEeeecCccHHhHHHH-HhcCCCHHHHHHHHHHHHHHHHH-------hCC--eeeCCCChHHeEEecCCCCCCe
Confidence            5667899999999999874321 1111   1244445555555554       357  9999999999999887755668


Q ss_pred             eEEeeccceeecccc
Q 024842          204 AILMDFGSARPAQSK  218 (262)
Q Consensus       204 ~kl~Dfg~a~~~~~~  218 (262)
                      ++++|||++...++.
T Consensus       303 i~llDFGivg~l~~~  317 (537)
T PRK04750        303 YIALDFGIVGSLNKE  317 (537)
T ss_pred             EEEEecceEEECCHH
Confidence            999999999977643

>cd05151 ChoK Choline Kinase (ChoK)

Probab=99.37  E-value=1.3e-12  Score=98.46  Aligned_cols=130  Identities=22%  Similarity=0.200  Sum_probs=89.8

Q ss_pred             EEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCCCCCcc-c
Q 024842           31 LRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSHRNLL-P  109 (262)
Q Consensus        31 ~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~h~~i~-~  109 (262)
                      .+.|+.|.++.||+++..                        ++.+++|....... ....+..|..+++.+.+.+++ +
T Consensus         3 ~~~l~~G~~~~vy~~~~~------------------------~~~~~lK~~~~~~~-~~~~~~~E~~~l~~l~~~~~~P~   57 (170)
T cd05151           3 ISPLKGGMTNKNYRVEVA------------------------NKKYVVRIPGNGTE-LLINRENEAENSKLAAEAGIGPK   57 (170)
T ss_pred             eeecCCcccCceEEEEEC------------------------CeEEEEEeCCCCcc-cccCHHHHHHHHHHHHHhCCCCc
Confidence            467899999999998854                        23677877644321 123456788888887654443 3


Q ss_pred             hhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCC---CeeecC
Q 024842          110 LLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEP---PYAHND  186 (262)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~---~ivH~d  186 (262)
                      ++...            ....+++||++.+.++.+. .        .   .....+.+++.+|..||+.+.   .++|+|
T Consensus        58 ~~~~~------------~~~~~lv~e~i~G~~l~~~-~--------~---~~~~~~~~l~~~l~~LH~~~~~~~~~~HgD  113 (170)
T cd05151          58 LYYFD------------PETGVLITEFIEGSELLTE-D--------F---SDPENLEKIAKLLKKLHSSPLPDLVPCHND  113 (170)
T ss_pred             eEEEe------------CCCCeEEEEecCCCccccc-c--------c---cCHHHHHHHHHHHHHHhCCCCCCceeecCC
Confidence            33321            2235799999999887642 0        1   112346789999999998761   249999


Q ss_pred             CCCCcEEEecCCCCCCceEEeeccceee
Q 024842          187 VKPGNILITCRKGQPPLAILMDFGSARP  214 (262)
Q Consensus       187 ikp~Nill~~~~~~~~~~kl~Dfg~a~~  214 (262)
                      ++|.||+++ ++    .++++||+.+..
T Consensus       114 ~~~~Nil~~-~~----~~~liDf~~a~~  136 (170)
T cd05151         114 LLPGNFLLD-DG----RLWLIDWEYAGM  136 (170)
T ss_pred             CCcCcEEEE-CC----eEEEEecccccC
Confidence            999999998 33    489999999864

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph

>KOG3087 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.34  E-value=1.7e-11  Score=90.52  Aligned_cols=163  Identities=15%  Similarity=0.085  Sum_probs=104.2

Q ss_pred             EEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc---chHHHHHHHHHHHHhhhCCCCC
Q 024842           30 ILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ---NNEQLEMVREEIRVSSLFSHRN  106 (262)
Q Consensus        30 ~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~---~~~~~~~~~~E~~~l~~l~h~~  106 (262)
                      ....|.+|+-+.|+++.+..  +...+|.                 -..|.+..+   ..-..++...|++.+.++.--.
T Consensus        11 ~l~likQGAEArv~~~~~~G--e~~iIK~-----------------Rf~K~YRHP~LD~kLtr~Rt~~Ear~l~k~~~~G   71 (229)
T KOG3087|consen   11 SLELIKQGAEARVPRGSFSG--EAAIIKE-----------------RFSKRYRHPALDQKLTRKRTKQEARLLAKCRALG   71 (229)
T ss_pred             cceeeeccceeeEeeeccCC--ceeEEee-----------------cccccccchHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            56788999999999988652  2222221                 122222222   1222456778888887765322


Q ss_pred             ccchhhhhHHHhhhccCCCCcceeEEEEeecCC-CchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeeec
Q 024842          107 LLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLD-GTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHN  185 (262)
Q Consensus       107 i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~  185 (262)
                      |.-+.-+|          .+...-.++|||..+ .++.+++....+..  ...+....+++++-..+.-||.++  ++||
T Consensus        72 I~~P~l~~----------~D~~~~~i~ME~~~g~~~vk~~i~~~~~~~--~~d~~~~~~~~~iG~~igklH~nd--iiHG  137 (229)
T KOG3087|consen   72 IPAPRLIF----------IDTYGGQIYMEFIDGASTVKDFILSTMEDE--SEDEGLAELARRIGELIGKLHDND--IIHG  137 (229)
T ss_pred             CCCceEEE----------EecCCCeEEEEeccchhHHHHHHHHHccCc--ccchhHHHHHHHHHHHHHHhhhCC--eecc
Confidence            22221112          123446788999876 46666665433322  333334778889999999999999  9999


Q ss_pred             CCCCCcEEEecCCCCCCceEEeeccceeeccccCccCcccC
Q 024842          186 DVKPGNILITCRKGQPPLAILMDFGSARPAQSKFALGQRRY  226 (262)
Q Consensus       186 dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~  226 (262)
                      ||..+||++..++++. .+.++|||++.....++..+...|
T Consensus       138 DLTTSNill~~~~~~~-~~~lIdfgls~~s~~~EDKgVDLY  177 (229)
T KOG3087|consen  138 DLTTSNILLRSDGNQI-TPILIDFGLSSVSRLPEDKGVDLY  177 (229)
T ss_pred             cccccceEEecCCCcC-ceEEEeecchhcccCcccccceee
Confidence            9999999999887654 468999999987665554444443

>cd05146 RIO3_euk RIO kinase family; eukaryotic RIO3, catalytic domain

Probab=99.34  E-value=6.7e-12  Score=95.69  Aligned_cols=100  Identities=12%  Similarity=0.158  Sum_probs=72.8

Q ss_pred             HHHHHHhhhCCC--CCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhh-HHHHhhhcCCCCCHHHHHHHHHHHH
Q 024842           93 REEIRVSSLFSH--RNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLD-HAKVMQTKKEFFSTSDVLQIFYQIC  169 (262)
Q Consensus        93 ~~E~~~l~~l~h--~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~-~~~~~~~~~~~~~~~~~~~i~~ql~  169 (262)
                      ++|.+.|+++..  .++++++..              ...+++|||..+..+.. .+.     ...++++....+..+++
T Consensus        74 ~kE~r~L~rl~~~Gv~vP~pi~~--------------~~~~lvME~Ig~~~~~~~~Lk-----d~~~~~~~~~~i~~~i~  134 (197)
T cd05146          74 EKEMHNLKRMQKAGIPCPEVVVL--------------KKHVLVMSFIGDDQVPAPKLK-----DAKLNDEEMKNAYYQVL  134 (197)
T ss_pred             HHHHHHHHHHHHcCCCCCeEEEe--------------cCCEEEEEEcCCCCccchhhh-----ccccCHHHHHHHHHHHH
Confidence            478888888753  455555542              35789999987654422 121     22355566777889999


Q ss_pred             HHHHHH-HcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeecccc
Q 024842          170 AGLKHM-HSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSK  218 (262)
Q Consensus       170 ~~l~~l-H~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~  218 (262)
                      .+|..+ |..+  ++||||+|.||++..+     .+.|+|||.+.....+
T Consensus       135 ~~l~~l~H~~g--lVHGDLs~~NIL~~~~-----~v~iIDF~qav~~~hp  177 (197)
T cd05146         135 SMMKQLYKECN--LVHADLSEYNMLWHDG-----KVWFIDVSQSVEPTHP  177 (197)
T ss_pred             HHHHHHHHhCC--eecCCCCHHHEEEECC-----cEEEEECCCceeCCCC
Confidence            999988 8888  9999999999999743     4999999998766543

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO3 is present only in multicellular eukaryotes. Its function is still unknown.

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=99.30  E-value=3e-12  Score=115.66  Aligned_cols=78  Identities=29%  Similarity=0.390  Sum_probs=60.2

Q ss_pred             HHHHHHHHcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeec--------------------cccCccCcc----
Q 024842          169 CAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPA--------------------QSKFALGQR----  224 (262)
Q Consensus       169 ~~~l~~lH~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~--------------------~~~~~~~~~----  224 (262)
                      +.+++|+|+.+  |+|||+||+|.+|+.-+    .+|+.|||+++..                    .+....+++    
T Consensus       153 vla~Eylh~yg--ivhrdlkpdnllIT~mG----hiKlTDfgLsk~GLms~atnl~eg~I~k~t~Ef~dKqvcgTPeyia  226 (1205)
T KOG0606|consen  153 VLAVEYLHSYG--IVHRDLKPDNLLITSMG----HIKLTDFGLSKKGLMSLATNLKEGHIEKDTHEFQDKQVCGTPEYIA  226 (1205)
T ss_pred             hHHhHhhccCC--eecCCCCCCcceeeecc----cccccchhhhhhhhhhccchhhhcchHHHHHHhhhccccCCccccC
Confidence            78899999988  99999999999999887    7999999998721                    122234454    


Q ss_pred             -------cCCcccchhhhhhhhhhhhhcCcccchhe
Q 024842          225 -------RYSCRNGLLSIVLHLSELLSCGTVRVIQI  253 (262)
Q Consensus       225 -------~~~~~~d~~s~g~~~~e~~~~~~v~~~g~  253 (262)
                             .|..|.|.|++|.+++|++- +-++++|-
T Consensus       227 PeVilrqgygkpvdwwamGiIlyeFLV-gcvpffGd  261 (1205)
T KOG0606|consen  227 PEVILRQGYGKPVDWWAMGIILYEFLV-GCVPFFGD  261 (1205)
T ss_pred             hhhhhhhccCCCccHHHHHHHHHHHhe-eeeeccCC
Confidence                   45666688999999888765 55666554

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.29  E-value=4.5e-13  Score=118.92  Aligned_cols=195  Identities=21%  Similarity=0.312  Sum_probs=146.3

Q ss_pred             cCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc--chHHHHHHHHHHHHhhh
Q 024842           24 NENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ--NNEQLEMVREEIRVSSL  101 (262)
Q Consensus        24 ~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~--~~~~~~~~~~E~~~l~~  101 (262)
                      ....|.+.+.||+|.++.|-........+.                     .++.|.+...  ......+...|..+.+.
T Consensus        18 ~~~~~~~~~~ig~gs~~~~~~~~~~~~~~~---------------------~~a~~~~s~~~~~~~~~~~i~~e~~~~~~   76 (601)
T KOG0590|consen   18 PNSQYKLSRSIGKGSFSSSALASNSRDPES---------------------SSATKPISIPPKSEDSSEHIDTETDIQKK   76 (601)
T ss_pred             ccccccccccccccccchhhhhhhcCCCcc---------------------eeeccCCCCCCCccchhhhcCcccccccc
Confidence            467899999999999999998887655432                     3344433332  23334555667777777


Q ss_pred             CC-CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCC-CCCHHHHHHHHHHHHHHHHHHH-cC
Q 024842          102 FS-HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKE-FFSTSDVLQIFYQICAGLKHMH-SL  178 (262)
Q Consensus       102 l~-h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~-~~~~~~~~~i~~ql~~~l~~lH-~~  178 (262)
                      +. |+|++++++..          ......++.+++..++++.+.+.   .... ..+...+..++.|+..++.|+| ..
T Consensus        77 ~s~h~n~~~~~~~~----------~~~~~~~~~~~~s~g~~~f~~i~---~~~~~~~~~~~~~~~~~ql~s~l~~~H~~~  143 (601)
T KOG0590|consen   77 LSKHSNTVHMIEPS----------SSPRSYLLSLSYSDGGSLFSKIS---HPDSTGTSSSSASRYLPQLNSGLSYLHPEN  143 (601)
T ss_pred             ccccccccccCCcc----------CCCcccccccCcccccccccccc---cCCccCCCCcchhhhhhhhccCccccCccc
Confidence            76 99999999876          45677889999989999988763   1232 5778889999999999999999 87


Q ss_pred             CCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccc-cC-------ccC-cccCCcccchhhhhhhhhhhhhcCccc
Q 024842          179 EPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQS-KF-------ALG-QRRYSCRNGLLSIVLHLSELLSCGTVR  249 (262)
Q Consensus       179 ~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~-~~-------~~~-~~~~~~~~d~~s~g~~~~e~~~~~~v~  249 (262)
                      +  +.|+|+||+|.+++..+.   .++++|||+|..+.. ..       ..+ ++.|.+||...+.++.-.    .-|+|
T Consensus       144 ~--~~h~~ikP~n~~l~~s~~---~l~~~df~~At~~~~~~g~~~~~~~~~g~s~~y~a~E~~~~~~~~~~----~~d~~  214 (601)
T KOG0590|consen  144 G--VTHRDIKPSNSLLDESGS---ALKIADFGLATAYRNKNGAERSLKDRCGSSPPYGAPEHLSGKAYRGP----SVDVW  214 (601)
T ss_pred             c--cccCCCCCccchhccCCC---cccCCCchhhccccccCCcceeeecccCCCCCCCCcccccchhhcCC----Ccccc
Confidence            8  999999999999976653   599999999997654 21       245 778888887766532221    36889


Q ss_pred             chheeheecccC
Q 024842          250 VIQILMRELMFG  261 (262)
Q Consensus       250 ~~g~~~~~l~~G  261 (262)
                      +.|+++..+++|
T Consensus       215 S~g~~l~~~~~g  226 (601)
T KOG0590|consen  215 SLGIVLSAMLTG  226 (601)
T ss_pred             cccccccccccC
Confidence            999988888776

>KOG1033 consensus eIF-2alpha kinase PEK/EIF2AK3 [Translation, ribosomal structure and biogenesis]

Probab=99.28  E-value=8.9e-13  Score=111.01  Aligned_cols=119  Identities=22%  Similarity=0.257  Sum_probs=92.6

Q ss_pred             cceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeeecCCCCCcEEEecCCCCCCceEE
Q 024842          127 KHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAIL  206 (262)
Q Consensus       127 ~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~dikp~Nill~~~~~~~~~~kl  206 (262)
                      ...+|+.|..|...+|.+|+.... .....+......++.|++.|++|   ++  .+|+|+||.||+...+.    .+||
T Consensus       328 ~~~lyI~Mn~c~~~tledWl~rr~-~~e~~s~s~~~~~~~q~~~~~~y---k~--~ihrdlkp~nif~~~d~----q~kI  397 (516)
T KOG1033|consen  328 KVYLYIQMNLCEKETLEDWLRRRR-TGEERSLSLMLDIFKQIAPAVEY---KG--LIHRDLKPSNIFFSDDD----QLKI  397 (516)
T ss_pred             ccchhhhhhhhhhhhHHHHhhCCC-cccccchhHHHHHHHhhccchhh---cc--chhhhccccccccccch----hhhh
Confidence            446889999999999999996333 23446788899999999999999   57  99999999999998777    7999


Q ss_pred             eeccceeeccccC-----------ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheeccc
Q 024842          207 MDFGSARPAQSKF-----------ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMF  260 (262)
Q Consensus       207 ~Dfg~a~~~~~~~-----------~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~  260 (262)
                      .|||+........           ..++..|++||.+-+--+.     ..-|+|++|++++|++.
T Consensus       398 gDFgl~ts~~~~~~~~~~~a~~t~~~gt~~YmsPEQi~g~~y~-----~kvdIyaLGlil~EL~~  457 (516)
T KOG1033|consen  398 GDFGLVTSQDKDETVAPAAASHTQQVGTLLYMSPEQIRGQQYS-----EKVDIYALGLILAELLI  457 (516)
T ss_pred             hhhhheeecccCCcccchhhhhhhcccccccCCHHHHhhhhhh-----hhcchhhHHHHHHHHHH
Confidence            9999998765433           3678889999877443222     23577777777777653

>KOG1023 consensus Natriuretic peptide receptor, guanylate cyclase [Signal transduction mechanisms]

Probab=99.26  E-value=6.8e-12  Score=107.17  Aligned_cols=100  Identities=22%  Similarity=0.260  Sum_probs=84.1

Q ss_pred             hhhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcC
Q 024842           99 SSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSL  178 (262)
Q Consensus        99 l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~  178 (262)
                      ++.+.|.|+.++++.++.          ....+.+.++|..|+|.+.+..   ....+++-....+++.++.||.|+|..
T Consensus         1 l~~l~h~n~~~f~g~~~~----------~~~~~~i~~~c~rGsl~D~i~~---~~~~~d~~F~~s~~rdi~~Gl~ylh~s   67 (484)
T KOG1023|consen    1 LRQLDHDNLNKFIGASVD----------GPEMIVIWEYCSRGSLLDILSN---EDIKLDYFFILSFIRDISKGLAYLHNS   67 (484)
T ss_pred             CcccchhhhhhheeeEec----------CCceEEEEeeecCccHHhHHhc---cccCccHHHHHHHHHHHHHHHHHHhcC
Confidence            467889999999999852          3678899999999999999874   344588888999999999999999984


Q ss_pred             CCCeeecCCCCCcEEEecCCCCCCceEEeeccceeecc
Q 024842          179 EPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQ  216 (262)
Q Consensus       179 ~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~  216 (262)
                      . ..+|+.++..|++++..=    .+||+|||+.....
T Consensus        68 ~-i~~hg~l~s~nClvd~~w----~lklt~~Gl~~~~~  100 (484)
T KOG1023|consen   68 P-IGYHGALKSSNCLVDSRW----VLKLTDFGLNSLLE  100 (484)
T ss_pred             c-ceeeeeeccccceeeeeE----EEEechhhhccccc
Confidence            3 349999999999997554    79999999987764

>COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.17  E-value=9.7e-11  Score=86.82  Aligned_cols=101  Identities=15%  Similarity=0.194  Sum_probs=74.7

Q ss_pred             HHHHHHHHHHhhhCCCC--CccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHH
Q 024842           89 LEMVREEIRVSSLFSHR--NLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFY  166 (262)
Q Consensus        89 ~~~~~~E~~~l~~l~h~--~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~  166 (262)
                      ..+..+|+.++..+.--  +.+.++.+.            .+...++|||..+..|.+.+..    .       ...+++
T Consensus        43 r~Rt~~Earil~~a~~~GV~~P~v~dvD------------~~~~~I~me~I~G~~lkd~l~~----~-------~~~~~r   99 (204)
T COG3642          43 RERTRREARILAKAREAGVPVPIVYDVD------------PDNGLIVMEYIEGELLKDALEE----A-------RPDLLR   99 (204)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCCeEEEEc------------CCCCEEEEEEeCChhHHHHHHh----c-------chHHHH
Confidence            45677889888877533  333334332            4556799999999888887752    1       134556


Q ss_pred             HHHHHHHHHHcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC
Q 024842          167 QICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF  219 (262)
Q Consensus       167 ql~~~l~~lH~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~  219 (262)
                      .+-.-+.-||..|  |+|+||.++||++..++     +.++|||++....+.+
T Consensus       100 ~vG~~vg~lH~~g--ivHGDLTtsNiIl~~~~-----i~~IDfGLg~~s~~~E  145 (204)
T COG3642         100 EVGRLVGKLHKAG--IVHGDLTTSNIILSGGR-----IYFIDFGLGEFSDEVE  145 (204)
T ss_pred             HHHHHHHHHHhcC--eecCCCccceEEEeCCc-----EEEEECCcccccccHH
Confidence            6666788899999  99999999999998765     8999999998665544

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=99.17  E-value=3.8e-10  Score=98.08  Aligned_cols=148  Identities=17%  Similarity=0.139  Sum_probs=108.0

Q ss_pred             ccceeehhhhccchHHHHHHHHHHHHhhhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhc
Q 024842           73 DGTYAMKKVLIQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTK  152 (262)
Q Consensus        73 ~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~  152 (262)
                      ++++.+...........+...+.+..++.++||||++++..+.          ..+..|+++|.+..  |..+++.    
T Consensus        37 ~~~vsVF~~~~~~~~~~~~~~~A~k~lKtlRHP~Il~yL~t~e----------~~~~~ylvTErV~P--l~~~lk~----  100 (690)
T KOG1243|consen   37 GGPVSVFVYKRSNGEVTELAKRAVKRLKTLRHPNILSYLDTTE----------EEGTLYLVTERVRP--LETVLKE----  100 (690)
T ss_pred             CCceEEEEEeCCCchhhHHHHHHHHHhhhccCchhhhhhhhhc----------ccCceEEEeecccc--HHHHHHH----
Confidence            3456666555554455566777888999999999999999983          35689999998764  5555542    


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHc-CCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccCc-----c-----
Q 024842          153 KEFFSTSDVLQIFYQICAGLKHMHS-LEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKFA-----L-----  221 (262)
Q Consensus       153 ~~~~~~~~~~~i~~ql~~~l~~lH~-~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~~-----~-----  221 (262)
                         +....+..-+.||+.||.|||. ++  ++|++|..+-|+++..+    ..||++|.++...+.-..     .     
T Consensus       101 ---l~~~~v~~Gl~qIl~AL~FL~~d~~--lvHgNv~~~SVfVn~~G----eWkLggle~v~~~~~~~~~~~~~~~~~s~  171 (690)
T KOG1243|consen  101 ---LGKEEVCLGLFQILAALSFLNDDCN--LVHGNVCKDSVFVNESG----EWKLGGLELVSKASGFNAPAKSLYLIESF  171 (690)
T ss_pred             ---hHHHHHHHHHHHHHHHHHHHhccCC--eeeccEeeeeEEEcCCC----cEEEeeeEEEeccccCCcccccchhhhcc
Confidence               3467777889999999999985 55  99999999999998777    799999998865432221     1     


Q ss_pred             CcccCCccc----chhhhhhhhhhhhhc
Q 024842          222 GQRRYSCRN----GLLSIVLHLSELLSC  245 (262)
Q Consensus       222 ~~~~~~~~~----d~~s~g~~~~e~~~~  245 (262)
                      ..+.-..|+    |.|.+|+..++++..
T Consensus       172 ~~P~~~~~s~~s~D~~~Lg~li~el~ng  199 (690)
T KOG1243|consen  172 DDPEEIDPSEWSIDSWGLGCLIEELFNG  199 (690)
T ss_pred             cChhhcCccccchhhhhHHHHHHHHhCc
Confidence            111111223    888888888888764

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.11  E-value=4.9e-11  Score=102.17  Aligned_cols=185  Identities=20%  Similarity=0.230  Sum_probs=128.3

Q ss_pred             cCCceEEEEEeec--ccceEEEEEEe--cccccccccccccccccCCCCCCCCccceeehhhhccc--hHHHHHHHHHHH
Q 024842           24 NENRYRILRQLGE--GGFAYVYLVKE--TVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN--NEQLEMVREEIR   97 (262)
Q Consensus        24 ~~~~y~~~~~ig~--G~~g~V~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~--~~~~~~~~~E~~   97 (262)
                      +...+.+.+.+|.  |.+|.+|.++.  ...+.                      .+++|+-....  ......-.+|+.
T Consensus       112 ~~~~~~~~~~~g~~~g~~~s~~~~~~~~~~s~~----------------------~~a~k~s~~p~s~p~~~~~k~~~~~  169 (524)
T KOG0601|consen  112 FDQRFPISSRTGSLPGSKGSVFKSRCTNSESPH----------------------KFAVKKSKIPFSPPLDSKRKLREFL  169 (524)
T ss_pred             hhhhcccccccccCCCCCceeecccCCcccCCc----------------------ccccccccCCCCCccccccccchhh
Confidence            3567788889999  99999999987  44333                      56666533332  233334445666


Q ss_pred             HhhhC-CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHH----HH
Q 024842           98 VSSLF-SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICA----GL  172 (262)
Q Consensus        98 ~l~~l-~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~----~l  172 (262)
                      ..+.+ .|+|.++.+..+          ...+..++-+|++ +.+|.++...   ....++...+|....+...    ||
T Consensus       170 s~~~i~~~~~~v~~~~~~----------e~~~~lfiqtE~~-~~sl~~~~~~---~~~~~p~~~l~~~~~~~~~~~~~al  235 (524)
T KOG0601|consen  170 SHHKIDSHENPVRDSPAW----------EGSGILFIQTELC-GESLQSYCHT---PCNFLPDNLLWNSLRDWLSRDVTAL  235 (524)
T ss_pred             cccccCccccccccCccc----------ccCCcceeeeccc-cchhHHhhhc---ccccCCchhhhhHHhhhhhcccccc
Confidence            66666 489999877666          4466677777754 5677766652   3334889999999999999    99


Q ss_pred             HHHHcCCCCeeecCCCCCcEEEecC-CCCCCceEEeeccceeeccccCc----------cCcccCCcccchhhhhhhhhh
Q 024842          173 KHMHSLEPPYAHNDVKPGNILITCR-KGQPPLAILMDFGSARPAQSKFA----------LGQRRYSCRNGLLSIVLHLSE  241 (262)
Q Consensus       173 ~~lH~~~~~ivH~dikp~Nill~~~-~~~~~~~kl~Dfg~a~~~~~~~~----------~~~~~~~~~~d~~s~g~~~~e  241 (262)
                      .++|+.+  ++|.|+||+||+...+ .    .++++|||+...+.+...          .+...|..++-.-.+.....+
T Consensus       236 ~~~hs~~--~~~~~~kp~~i~~~~~~~----s~~~~df~~v~~i~~~~~~~~~~~~~r~~~~~~Y~~ke~~~~l~~~~~d  309 (524)
T KOG0601|consen  236 SHLHSNN--IVHDDLKPANIFTTSDWT----SCKLTDFGLVSKISDGNFSSVFKVSKRPEGDCIYAAKELLNGLATFASD  309 (524)
T ss_pred             cccCCCc--ccccccchhheecccccc----eeecCCcceeEEccCCccccceeeeecCCCCceEeChhhhccccchHhh
Confidence            9999988  9999999999999877 4    699999999998775541          344556666544444444444


Q ss_pred             hhhcCcccc
Q 024842          242 LLSCGTVRV  250 (262)
Q Consensus       242 ~~~~~~v~~  250 (262)
                      +++.+.++.
T Consensus       310 i~sl~ev~l  318 (524)
T KOG0601|consen  310 IFSLGEVIL  318 (524)
T ss_pred             hcchhhhhH
Confidence            444333333

>cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins

Probab=99.06  E-value=1.5e-09  Score=85.18  Aligned_cols=146  Identities=18%  Similarity=0.203  Sum_probs=96.9

Q ss_pred             EEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccch-HHHHHHHHHHHHhhhCCCC--Ccc
Q 024842           32 RQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNN-EQLEMVREEIRVSSLFSHR--NLL  108 (262)
Q Consensus        32 ~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~-~~~~~~~~E~~~l~~l~h~--~i~  108 (262)
                      +.|+.|.++.+|+++...                       +..+++|....... .....+..|..+++.+.+.  .++
T Consensus         4 ~~l~~G~~n~~~~v~~~~-----------------------g~~~ilK~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~vp   60 (223)
T cd05154           4 RQLSGGQSNLTYLLTAGG-----------------------GRRLVLRRPPPGALLPSAHDVAREYRVLRALAGTGVPVP   60 (223)
T ss_pred             eecCCCccceEEEEEecC-----------------------CcceEEEeCCCcccCcccccHHHHHHHHHHhhCCCCCCC
Confidence            678999999999988642                       13577776654322 1245678899999888753  345


Q ss_pred             chhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcC----------
Q 024842          109 PLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSL----------  178 (262)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~----------  178 (262)
                      +++.....       ....+..+++|+++.+.++.+.+.     ...+++.....++.+++.+|..||+.          
T Consensus        61 ~~~~~~~~-------~~~~~~~~~v~e~i~G~~l~~~~~-----~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~~  128 (223)
T cd05154          61 KVLALCED-------PSVLGTPFYVMERVDGRVLRDRLL-----RPELSPEERRALARALADTLAALHSVDPAAVGLGDL  128 (223)
T ss_pred             CEEEECCC-------CCccCCceEEEEEeCCEecCCCCC-----CCCCCHHHHHHHHHHHHHHHHHHhCCChhhcCCccc
Confidence            55554310       011135689999999988876442     02356666666777777777777742          


Q ss_pred             --------------------------------------------CCCeeecCCCCCcEEEecCCCCCCceEEeeccceee
Q 024842          179 --------------------------------------------EPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARP  214 (262)
Q Consensus       179 --------------------------------------------~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~  214 (262)
                                                                  ...++|+|++|+||+++.++  ...+.|+||+.+..
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~HgD~~~~Nil~~~~~--~~~~~iID~e~~~~  206 (223)
T cd05154         129 GRPGGYLERQVARWRRQYDASRTDEPPAMERLLRWLEAHLPADSRPGLVHGDYRLGNVLFHPDE--PRVVAVLDWELATL  206 (223)
T ss_pred             CCCCchHHHHHHHHHHHHHhhcccccHHHHHHHHHHHhhCCCCCCcEEEECCCCcccEEEcCCC--CcEEEEEecccccc
Confidence                                                        12469999999999998631  11578999998753

This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain

>PRK15123 lipopolysaccharide core heptose(I) kinase RfaP; Provisional

Probab=98.99  E-value=3.8e-09  Score=85.00  Aligned_cols=115  Identities=10%  Similarity=0.027  Sum_probs=79.0

Q ss_pred             HHHHHHHHhhhCCCCCccc--hhhhhHHHhhhccCCCCcceeEEEEeecCCC-chhhHHHHhhhcCCCCCHHHHHHHHHH
Q 024842           91 MVREEIRVSSLFSHRNLLP--LLDHAIIAVKANQEGSWKHEAYLLFPVHLDG-TLLDHAKVMQTKKEFFSTSDVLQIFYQ  167 (262)
Q Consensus        91 ~~~~E~~~l~~l~h~~i~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~L~~~~~~~~~~~~~~~~~~~~~i~~q  167 (262)
                      .+.+|...+..+...+|..  +..+...     ..+......+++||++.+. +|.+++....  ..+.+......++.+
T Consensus        74 ~a~rE~~~l~~L~~~GIptP~pVa~~e~-----~~~~~~~~s~LVte~l~~~~sL~~~~~~~~--~~~~~~~~~~~ll~~  146 (268)
T PRK15123         74 GADREWRAIHRLHEVGVDTMTGVAFGER-----GSNPATRTSFIITEDLAPTISLEDYCADWA--TNPPDPRLKRMLIKR  146 (268)
T ss_pred             HHHHHHHHHHHHHHcCCCCCCeeEEEEe-----cCCCccceeEEEEeeCCCCccHHHHHHhhc--ccCCCHHHHHHHHHH
Confidence            3567777777664333322  2222210     0011134578999998876 7888875332  233567778899999


Q ss_pred             HHHHHHHHHcCCCCeeecCCCCCcEEEecC---CCCCCceEEeeccceee
Q 024842          168 ICAGLKHMHSLEPPYAHNDVKPGNILITCR---KGQPPLAILMDFGSARP  214 (262)
Q Consensus       168 l~~~l~~lH~~~~~ivH~dikp~Nill~~~---~~~~~~~kl~Dfg~a~~  214 (262)
                      ++..+.-||..|  ++|+|+++.|||++.+   ++....+.|+||+.+..
T Consensus       147 la~~i~~LH~~G--i~HgDL~~~NiLl~~~~~~~~~~~~~~LIDl~r~~~  194 (268)
T PRK15123        147 VATMVRDMHAAG--INHRDCYICHFLLHLPFPGREEDLKLSVIDLHRAQI  194 (268)
T ss_pred             HHHHHHHHHHCc--CccCCCChhhEEEeccccCCCCCceEEEEECCcccc
Confidence            999999999999  9999999999999852   12234699999999864

>KOG1266 consensus Protein kinase [Signal transduction mechanisms]

Probab=98.95  E-value=3.5e-09  Score=84.97  Aligned_cols=95  Identities=18%  Similarity=0.170  Sum_probs=81.3

Q ss_pred             hhhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcC
Q 024842           99 SSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSL  178 (262)
Q Consensus        99 l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~  178 (262)
                      +.++-|.||++++.+|-..     ...+..+..++.+|+..+++.++++........+......+++.||++||.|||+.
T Consensus       121 llqlvHsnlvkfH~yw~d~-----K~~e~~rviFiteymssgs~~~fLkrt~~~~~a~~~~~wkkw~tqIlsal~yLhs~  195 (458)
T KOG1266|consen  121 LLQLVHSNLVKFHKYWTDK-----KYEEKPRVIFITEYMSSGSLKQFLKRTKKNQKALFQKAWKKWCTQILSALSYLHSC  195 (458)
T ss_pred             HHHHHHHHHHHHHHhhccc-----ccccccceEEEEecccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhcc
Confidence            4555699999999988421     12345678899999999999999998877778889999999999999999999999


Q ss_pred             CCCeeecCCCCCcEEEecCC
Q 024842          179 EPPYAHNDVKPGNILITCRK  198 (262)
Q Consensus       179 ~~~ivH~dikp~Nill~~~~  198 (262)
                      .++|+|+++..+.|++..++
T Consensus       196 ~PpiihgnlTc~tifiq~ng  215 (458)
T KOG1266|consen  196 DPPIIHGNLTCDTIFIQHNG  215 (458)
T ss_pred             CCccccCCcchhheeecCCc
Confidence            99999999999999998665

>KOG3741 consensus Poly(A) ribonuclease subunit [RNA processing and modification]

Probab=98.90  E-value=1.5e-08  Score=86.13  Aligned_cols=171  Identities=16%  Similarity=0.092  Sum_probs=114.8

Q ss_pred             ccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCCCCCccchhhhhHH
Q 024842           37 GGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAII  116 (262)
Q Consensus        37 G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~  116 (262)
                      -...+.|+++...++.                      .|++|++............+-++.++++.|+|++++.++|..
T Consensus       287 ~~~~Ttyk~~s~~DG~----------------------~YvLkRlhg~r~~~~nk~t~lve~wkkl~h~NvV~frevf~t  344 (655)
T KOG3741|consen  287 LFSITTYKATSNVDGN----------------------AYVLKRLHGDRDQSTNKDTSLVEAWKKLCHTNVVPFREVFLT  344 (655)
T ss_pred             cccceeEeeeeccCCc----------------------eeeeeeeccccccCcccchHHHHHHHHhccCceeehhhhhhh
Confidence            3567889998877654                      688888744433333333445778999999999999999861


Q ss_pred             HhhhccCCCCcceeEEEEeecCC-CchhhHHHHhh-----------hcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeee
Q 024842          117 AVKANQEGSWKHEAYLLFPVHLD-GTLLDHAKVMQ-----------TKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAH  184 (262)
Q Consensus       117 ~~~~~~~~~~~~~~~~v~~~~~~-~~L~~~~~~~~-----------~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH  184 (262)
                            .-.....+.++++|++. ++|.++-..-.           ..+...+|+.+|.++.||..||.++|+.|  ..=
T Consensus       345 ------~tF~D~SlvlvYDYyP~s~TL~d~~F~~~~~t~~~n~~~~~~~~~~~e~~lW~y~~QLtaaL~sIHssG--LAc  416 (655)
T KOG3741|consen  345 ------YTFGDLSLVLVYDYYPSSPTLYDLYFANPPFTKRTNSFYPSQNLKAPEEVLWSYISQLTAALYSIHSSG--LAC  416 (655)
T ss_pred             ------hccCcceEEEEEecCCCCchHHHHHccCCccccccccccccCCCCchHHHHHHHHHHHHHHHHHHHhcC--cee
Confidence                  11234567888898765 56665432111           11234688999999999999999999999  877


Q ss_pred             cCCCCCcEEEecCCCCCCceEEeeccceeeccccCccCcccCCcccchhhhhhhhhhh
Q 024842          185 NDVKPGNILITCRKGQPPLAILMDFGSARPAQSKFALGQRRYSCRNGLLSIVLHLSEL  242 (262)
Q Consensus       185 ~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~d~~s~g~~~~e~  242 (262)
                      +-|.|.+|+++.+.    +++|+..|......++. ..+-.-...+|...+|.++..+
T Consensus       417 k~L~~~kIlv~G~~----RIriS~C~i~Dvl~~d~-~~~le~~Qq~D~~~lG~ll~aL  469 (655)
T KOG3741|consen  417 KTLDLKKILVTGKM----RIRISGCGIMDVLQEDP-TEPLESQQQNDLRDLGLLLLAL  469 (655)
T ss_pred             ecccHhHeEeeCcc----eEEEecccceeeecCCC-CcchhHHhhhhHHHHHHHHHHH
Confidence            99999999997654    68888777765544332 0111112234555566554443

>PF01163 RIO1: RIO1 family; InterPro: IPR018934 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=98.88  E-value=1.1e-08  Score=77.81  Aligned_cols=103  Identities=18%  Similarity=0.221  Sum_probs=67.2

Q ss_pred             HHHHHHHHHHhhhCCCC--CccchhhhhHHHhhhccCCCCcceeEEEEeecC--CCchhhHHHHhhhcCCCCCHHHHHHH
Q 024842           89 LEMVREEIRVSSLFSHR--NLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHL--DGTLLDHAKVMQTKKEFFSTSDVLQI  164 (262)
Q Consensus        89 ~~~~~~E~~~l~~l~h~--~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~L~~~~~~~~~~~~~~~~~~~~~i  164 (262)
                      .....+|.+.|..+...  ++++++.+              ....++|||..  +..+..+...    .  ++.+....+
T Consensus        52 ~~~~~~E~~~L~~l~~~Gv~vP~p~~~--------------~~~~ivME~I~~~G~~~~~l~~~----~--~~~~~~~~~  111 (188)
T PF01163_consen   52 REWAKKEFRNLKRLYEAGVPVPKPYDY--------------NRNVIVMEYIGEDGVPLPRLKDV----D--LSPEEPKEL  111 (188)
T ss_dssp             HHHHHHHHHHHHHCCCTT-SS--EEEE--------------ETTEEEEE--EETTEEGGCHHHC----G--GGGSTHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCccCCcEEEE--------------eCCEEEEEecCCCccchhhHHhc----c--ccchhHHHH
Confidence            34567899999999754  55666543              34689999998  6666554331    1  113445666


Q ss_pred             HHHHHHHHHH-HHcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeecccc
Q 024842          165 FYQICAGLKH-MHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSK  218 (262)
Q Consensus       165 ~~ql~~~l~~-lH~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~  218 (262)
                      +.+++..+.. +|..|  ++|||+.+.||+++.++     +.++|||.+.....+
T Consensus       112 ~~~il~~~~~~~~~~g--ivHGDLs~~NIlv~~~~-----~~iIDf~qav~~~~p  159 (188)
T PF01163_consen  112 LEEILEEIIKMLHKAG--IVHGDLSEYNILVDDGK-----VYIIDFGQAVDSSHP  159 (188)
T ss_dssp             HHHHHHHHHHHHHCTT--EEESS-STTSEEEETTC-----EEE--GTTEEETTST
T ss_pred             HHHHHHHHHHHHHhcC--ceecCCChhhEEeecce-----EEEEecCcceecCCc
Confidence            7777775555 57888  99999999999998664     999999999876543

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents RIO kinase, they exhibit little sequence similarity with eukaryotic protein kinases, and are classified as atypical protein kinases []. The conformation of ATP when bound to the RIO kinases is unique when compared with ePKs, such as serine/threonine kinases or the insulin receptor tyrosine kinase, suggesting that the detailed mechanism by which the catalytic aspartate of RIO kinases participates in phosphoryl transfer may not be identical to that employed in known serine/threonine ePKs. Representatives of the RIO family are present in organisms varying from Archaea to humans, although the RIO3 proteins have only been identified in multicellular eukaryotes, to date. Yeast Rio1 and Rio2 proteins are required for proper cell cycle progression and chromosome maintenance, and are necessary for survival of the cells. These proteins are involved in the processing of 20 S pre-rRNA via late 18 S rRNA processing. ; GO: 0003824 catalytic activity, 0005524 ATP binding; PDB: 1TQP_A 1ZAR_A 1TQI_A 1ZAO_A 1TQM_A 3RE4_A 1ZTH_B 1ZP9_A 1ZTF_A.

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.87  E-value=2.4e-09  Score=92.02  Aligned_cols=151  Identities=22%  Similarity=0.288  Sum_probs=111.9

Q ss_pred             cCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHH--HHHHHHHHhhh
Q 024842           24 NENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLE--MVREEIRVSSL  101 (262)
Q Consensus        24 ~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~--~~~~E~~~l~~  101 (262)
                      -..+|..+..||.+.|+.|+....+.                     .++..|++|.....-.....  .-..|+.+...
T Consensus       263 ~~~df~~v~~i~~~~~~~~~~~~~r~---------------------~~~~~Y~~ke~~~~l~~~~~di~sl~ev~l~~~  321 (524)
T KOG0601|consen  263 KLTDFGLVSKISDGNFSSVFKVSKRP---------------------EGDCIYAAKELLNGLATFASDIFSLGEVILEAI  321 (524)
T ss_pred             ecCCcceeEEccCCccccceeeeecC---------------------CCCceEeChhhhccccchHhhhcchhhhhHhhH
Confidence            34578999999999999999876431                     13447888876655332222  22456666655


Q ss_pred             C-CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCC
Q 024842          102 F-SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEP  180 (262)
Q Consensus       102 l-~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~  180 (262)
                      + .|.+.+..+..|.          .....|+-.||+.++++.....    ....+.+...+.+..|++.++.++|+.. 
T Consensus       322 l~~~~~~~g~~~~W~----------~~r~~~ip~e~~~~~s~~l~~~----~~~~~d~~~~~~~~~q~~~~l~~i~s~~-  386 (524)
T KOG0601|consen  322 LGSHLPSVGKNSSWS----------QLRQGYIPLEFCEGGSSSLRSV----TSQMLDEDPRLRLTAQILTALNVIHSKL-  386 (524)
T ss_pred             hhcccccCCCCCCcc----------ccccccCchhhhcCcchhhhhH----HHHhcCcchhhhhHHHHHhccccccchh-
Confidence            5 4888888776663          3556778889999988876553    2334888899999999999999999988 


Q ss_pred             CeeecCCCCCcEEEecCCCCCCceEEeeccceee
Q 024842          181 PYAHNDVKPGNILITCRKGQPPLAILMDFGSARP  214 (262)
Q Consensus       181 ~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~  214 (262)
                       ++|.|++|+||++..++   ...++.||++...
T Consensus       387 -~~~~d~~psni~i~~~~---~~~~~~~~~~~t~  416 (524)
T KOG0601|consen  387 -FVHLDVKPSNILISNDG---FFSKLGDFGCWTR  416 (524)
T ss_pred             -hhcccccccceeeccch---hhhhccccccccc
Confidence             99999999999998764   2578999998863

>PF06293 Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family; InterPro: IPR010440 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=98.77  E-value=2.6e-08  Score=77.42  Aligned_cols=114  Identities=16%  Similarity=0.137  Sum_probs=79.7

Q ss_pred             HHHHHHHHHhhhCCCCC--ccchhhhhHHHhhhccCCCCcceeEEEEeecCCC-chhhHHHHhhhcCCCCCHHHHHHHHH
Q 024842           90 EMVREEIRVSSLFSHRN--LLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDG-TLLDHAKVMQTKKEFFSTSDVLQIFY  166 (262)
Q Consensus        90 ~~~~~E~~~l~~l~h~~--i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~L~~~~~~~~~~~~~~~~~~~~~i~~  166 (262)
                      ....+|...+..+....  .++++++...      ........+++++++.+. +|.+++...    ...+......++.
T Consensus        56 ~ra~~E~~~~~~L~~~Gi~tP~pva~~~~------r~~~~~~s~lite~l~~~~~L~~~~~~~----~~~~~~~~~~ll~  125 (206)
T PF06293_consen   56 SRAKREWRNLQRLREAGIPTPEPVAYGER------RKGGGYRSYLITEALPGAQDLRDLLQQW----EQLDPSQRRELLR  125 (206)
T ss_pred             hHHHHHHHHHHHHHHcCCCCCcEEEEEEE------cCCCceeEEEEEEeCCCcccHHHHHHhh----cccchhhHHHHHH
Confidence            34566776666654322  3333333210      012224568999998874 788877522    2266677888999


Q ss_pred             HHHHHHHHHHcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeecc
Q 024842          167 QICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQ  216 (262)
Q Consensus       167 ql~~~l~~lH~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~  216 (262)
                      +++..+.-||++|  ++|+|++|.|||+..++ ....+.|+||+.+....
T Consensus       126 ~l~~~i~~lH~~g--i~H~Dl~~~NILv~~~~-~~~~~~lIDld~~~~~~  172 (206)
T PF06293_consen  126 ALARLIAKLHDAG--IYHGDLNPSNILVDPDD-GQYRFYLIDLDRMRFRP  172 (206)
T ss_pred             HHHHHHHHHHHCc--CCCCCCCcccEEEeCCC-CceeEEEEcchhceeCC
Confidence            9999999999999  99999999999998775 34479999999987644

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents lipopolysaccharide kinases which are related to protein kinases IPR000719 from INTERPRO. This family includes waaP (rfaP) gene product is required for the addition of phosphate to O-4 of the first heptose residue of the lipopolysaccharide (LPS) inner core region. It has previously been shown that WaaP is necessary for resistance to hydrophobic and polycationic antimicrobials in E. coli and that it is required for virulence in invasive strains of Salmonella enterica [].; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0009103 lipopolysaccharide biosynthetic process, 0016020 membrane

>PF06176 WaaY: Lipopolysaccharide core biosynthesis protein (WaaY); InterPro: IPR009330 This family consists of several bacterial lipopolysaccharide core biosynthesis proteins (WaaY or RfaY)

Probab=98.76  E-value=1.3e-07  Score=72.85  Aligned_cols=141  Identities=18%  Similarity=0.240  Sum_probs=86.9

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHH---------HH
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVR---------EE   95 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~---------~E   95 (262)
                      .++|++.+.+.......|.+-.-.                        ++.+++|..........+.+.         +.
T Consensus        30 ~~~~~~~kv~k~~~r~~ValIei~------------------------~~kyIlK~pr~~~~r~er~~~sf~kg~~~~~l   85 (229)
T PF06176_consen   30 DNNYKIIKVFKNTKRNYVALIEID------------------------GKKYILKEPREENRRPERRFKSFFKGSEYSRL   85 (229)
T ss_pred             hCCceEEEeecCCCccEEEEEEEC------------------------CcEEEEeccchhhhhHHHHHHHHhccHHHHHH
Confidence            567888888887777777765532                        346777766554332222211         22


Q ss_pred             HHHhhhCC---CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHH
Q 024842           96 IRVSSLFS---HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGL  172 (262)
Q Consensus        96 ~~~l~~l~---h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l  172 (262)
                      +..+..+.   -.....++.+..     ..........+++|||+.|..|.+...        +++.    +...+..++
T Consensus        86 ~~~~~~i~~~g~~~~~~~yl~~e-----kk~~~~~~~~~ll~EYIeG~~l~d~~~--------i~e~----~~~ki~~~i  148 (229)
T PF06176_consen   86 INNTDKIRNEGFTEPADPYLAAE-----KKIFRYTSSYVLLMEYIEGVELNDIED--------IDED----LAEKIVEAI  148 (229)
T ss_pred             HHHHHHHHHcCccccccceeeee-----eeeccceeEEEEEEEEecCeecccchh--------cCHH----HHHHHHHHH
Confidence            22222222   222222221110     000122455678999999988877543        3332    345677788


Q ss_pred             HHHHcCCCCeeecCCCCCcEEEecCCCCCCceEEeecccee
Q 024842          173 KHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSAR  213 (262)
Q Consensus       173 ~~lH~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~  213 (262)
                      .-+|+.|  ++|+|.+|.|++++.++     ++++||+...
T Consensus       149 kqlH~~G--~~HGD~hpgNFlv~~~~-----i~iID~~~k~  182 (229)
T PF06176_consen  149 KQLHKHG--FYHGDPHPGNFLVSNNG-----IRIIDTQGKR  182 (229)
T ss_pred             HHHHHcC--CccCCCCcCcEEEECCc-----EEEEECcccc
Confidence            9999999  99999999999998665     9999997764

The waaY, waaQ, and waaP genes are located in the central operon of the waa (formerly rfa) locus on the chromosome of Escherichia coli. This locus contains genes whose products are involved in the assembly of the core region of the lipopolysaccharide molecule. WaaY is the enzyme that phosphorylates HepII in this system [].; GO: 0009244 lipopolysaccharide core region biosynthetic process

>COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms]

Probab=98.68  E-value=2e-07  Score=73.60  Aligned_cols=147  Identities=14%  Similarity=0.122  Sum_probs=91.7

Q ss_pred             eEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc----------c--hHHHHHHHHH
Q 024842           28 YRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ----------N--NEQLEMVREE   95 (262)
Q Consensus        28 y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~----------~--~~~~~~~~~E   95 (262)
                      +.++..||-|.-+.||.|.+....+ +++|      .....      ....++++..          +  ........+|
T Consensus        93 e~iG~~IGvGKEsdVY~~~~~~g~~-~~vK------fHR~G------rtsFrkvk~~R~y~~~~~h~sWl~~sRl~A~rE  159 (304)
T COG0478          93 EAIGTKIGVGKESDVYVAIDPKGRK-VAVK------FHRLG------RTSFRKVKRNRDYLADKEHGSWLYVSRLAAERE  159 (304)
T ss_pred             HhhccccccCccceEEEEECCCCCE-EEEE------EeecC------chhhhhhcchhhhhccccCcchhhhHHHHHHHH
Confidence            4678899999999999999874332 2222      11111      0111111111          1  1113345678


Q ss_pred             HHHhhhCCCC--CccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHH
Q 024842           96 IRVSSLFSHR--NLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLK  173 (262)
Q Consensus        96 ~~~l~~l~h~--~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~  173 (262)
                      ..+|..|...  .+++++++              ++..++||+..+..|...-         ++.+....++..|+.-+.
T Consensus       160 f~~L~~L~~~G~~VP~P~~~--------------nRHaVvMe~ieG~eL~~~r---------~~~en~~~il~~il~~~~  216 (304)
T COG0478         160 FEALQRLYPEGVKVPKPIAW--------------NRHAVVMEYIEGVELYRLR---------LDVENPDEILDKILEEVR  216 (304)
T ss_pred             HHHHHHhhhcCCCCCCcccc--------------ccceeeeehcccceeeccc---------CcccCHHHHHHHHHHHHH
Confidence            8999998654  77777764              4578999999887776531         112223333344444444


Q ss_pred             HHHcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeecc
Q 024842          174 HMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQ  216 (262)
Q Consensus       174 ~lH~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~  216 (262)
                      -+-..|  ++|||+.+=||+++.++    .+.++||--+....
T Consensus       217 ~~~~~G--iVHGDlSefNIlV~~dg----~~~vIDwPQ~v~~~  253 (304)
T COG0478         217 KAYRRG--IVHGDLSEFNILVTEDG----DIVVIDWPQAVPIS  253 (304)
T ss_pred             HHHHcC--ccccCCchheEEEecCC----CEEEEeCcccccCC
Confidence            444557  99999999999999987    49999997766544

>KOG1235 consensus Predicted unusual protein kinase [General function prediction only]

Probab=98.58  E-value=6e-07  Score=78.23  Aligned_cols=85  Identities=19%  Similarity=0.193  Sum_probs=61.5

Q ss_pred             cceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeeecCCCCCcEEEecCCCCCCceEE
Q 024842          127 KHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAIL  206 (262)
Q Consensus       127 ~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~dikp~Nill~~~~~~~~~~kl  206 (262)
                      .....++|||+.|..+.|.-. ..+.  .++...+..-+.+...-.-+-|  |  .+|+|-+|.||++..+......+.+
T Consensus       274 st~RVLtME~~~G~~i~Dl~~-i~~~--gi~~~~i~~~l~~~~~~qIf~~--G--ffHaDPHPGNilv~~~~~~~~~ivl  346 (538)
T KOG1235|consen  274 STKRVLTMEYVDGIKINDLDA-IDKR--GISPHDILNKLVEAYLEQIFKT--G--FFHADPHPGNILVRPNPEGDEEIVL  346 (538)
T ss_pred             CcceEEEEEecCCccCCCHHH-HHHc--CCCHHHHHHHHHHHHHHHHHhc--C--CccCCCCCCcEEEecCCCCCccEEE
Confidence            567899999999998887633 2222  2666666665555554444444  6  9999999999999865433447999


Q ss_pred             eeccceeecccc
Q 024842          207 MDFGSARPAQSK  218 (262)
Q Consensus       207 ~Dfg~a~~~~~~  218 (262)
                      -|||+...+...
T Consensus       347 lDhGl~~~is~~  358 (538)
T KOG1235|consen  347 LDHGLYAVISHK  358 (538)
T ss_pred             EcccccccccHH
Confidence            999999876644

>PRK09902 hypothetical protein; Provisional

Probab=98.51  E-value=1.1e-06  Score=67.46  Aligned_cols=114  Identities=14%  Similarity=0.111  Sum_probs=78.9

Q ss_pred             HHHHHHHHHHhhhCCCCC--ccchhhhhHHHhhhccCCCCcceeEEEEeecCC-CchhhHHHHhhhcCCCCCHHHHHHHH
Q 024842           89 LEMVREEIRVSSLFSHRN--LLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLD-GTLLDHAKVMQTKKEFFSTSDVLQIF  165 (262)
Q Consensus        89 ~~~~~~E~~~l~~l~h~~--i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~L~~~~~~~~~~~~~~~~~~~~~i~  165 (262)
                      ...+.+|...++.+...+  ++++. .+    ... .....-..+++++-+.+ -+|.+++...  ...+.+......++
T Consensus        63 ~ptf~rE~~~L~~L~~~GvPVP~pv-f~----~~~-k~~~~~rA~LVTe~L~g~~~L~~~l~~~--~~~~~~~~~k~~il  134 (216)
T PRK09902         63 RPTIVREVAVIKELERAGVIVPKIV-FG----EAV-KIEGEWRALLVTEDMAGFISIADWYAQH--AVSPYSDEVRQAML  134 (216)
T ss_pred             chHHHHHHHHHHHHHHcCCCCCccc-ee----eee-ccCCceEEEEEEEeCCCCccHHHHHhcC--CcCCcchHHHHHHH
Confidence            367888988888885333  33333 11    000 11224457788885543 5777776421  12346778888999


Q ss_pred             HHHHHHHHHHHcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceee
Q 024842          166 YQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARP  214 (262)
Q Consensus       166 ~ql~~~l~~lH~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~  214 (262)
                      .+++..+.-||+.|  +.|+|+.+.||+++.++  ...++++||.-++.
T Consensus       135 ~~va~~ia~LH~~G--v~Hgdly~khIll~~~g--~~~v~lIDlEk~r~  179 (216)
T PRK09902        135 KAVALAFKKMHSVN--RQHGCCYVRHIYVKTEG--KAEAGFLDLEKSRR  179 (216)
T ss_pred             HHHHHHHHHHHHCC--CcCCCCCHhheeecCCC--CeeEEEEEhhccch
Confidence            99999999999999  99999999999998554  23599999987764

>TIGR02172 Fb_sc_TIGR02172 Fibrobacter succinogenes paralogous family TIGR02172

Probab=98.41  E-value=2.9e-06  Score=66.91  Aligned_cols=30  Identities=20%  Similarity=0.385  Sum_probs=24.9

Q ss_pred             CCeeecCCCCCcEEEecCCCCCCceEEeeccceee
Q 024842          180 PPYAHNDVKPGNILITCRKGQPPLAILMDFGSARP  214 (262)
Q Consensus       180 ~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~  214 (262)
                      ..++|+|++|.||+++.++     +.++||+.+..
T Consensus       153 ~~~~HgD~~~~Nii~~~~~-----~~iIDwe~a~~  182 (226)
T TIGR02172       153 STCLHGDFQIGNLITSGKG-----TYWIDLGDFGY  182 (226)
T ss_pred             CceEecCCCCCcEEEcCCC-----cEEEechhcCc
Confidence            3579999999999997544     78999998853

This model describes a paralogous family of five proteins, likely to be enzymes, in the rumen bacterium Fibrobacter succinogenes S85. Members show homology to proteins described by PFAM model pfam01636, a phosphotransferase enzyme family associated with resistance to aminoglycoside antibiotics. However, members of this family score below the current trusted and noise cutoffs for pfam01636.

>COG0661 AarF Predicted unusual protein kinase [General function prediction only]

Probab=98.33  E-value=2.7e-06  Score=74.37  Aligned_cols=84  Identities=19%  Similarity=0.254  Sum_probs=56.7

Q ss_pred             CCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeeecCCCCCcEEEecCCCCCCce
Q 024842          125 SWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLA  204 (262)
Q Consensus       125 ~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~dikp~Nill~~~~~~~~~~  204 (262)
                      +..+...++|||+.|-.+.+......   ..++...+.....++..---+ + .|  +.|.|.+|.||++..++    .+
T Consensus       236 e~t~~~VLtmE~i~Gi~i~d~~~l~~---~g~d~k~ia~~~~~~f~~q~~-~-dg--ffHaDpHpGNi~v~~~g----~i  304 (517)
T COG0661         236 EYTTRRVLTMEWIDGIKISDIAALKS---AGIDRKELAELLVRAFLRQLL-R-DG--FFHADPHPGNILVRSDG----RI  304 (517)
T ss_pred             hccCCcEEEEEeeCCEecccHHHHHh---cCCCHHHHHHHHHHHHHHHHH-h-cC--ccccCCCccceEEecCC----cE
Confidence            33677899999999999988743221   224433333332222221122 2 37  99999999999998876    79


Q ss_pred             EEeeccceeeccccC
Q 024842          205 ILMDFGSARPAQSKF  219 (262)
Q Consensus       205 kl~Dfg~a~~~~~~~  219 (262)
                      .+.|||....+++..
T Consensus       305 ~~lDfGi~g~l~~~~  319 (517)
T COG0661         305 VLLDFGIVGRLDPKF  319 (517)
T ss_pred             EEEcCcceecCCHHH
Confidence            999999998777543

>COG1718 RIO1 Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms / Cell division and chromosome partitioning]

Probab=98.28  E-value=1.5e-05  Score=62.49  Aligned_cols=79  Identities=14%  Similarity=0.166  Sum_probs=55.6

Q ss_pred             ceeEEEEeecCCCchh-hHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHc-CCCCeeecCCCCCcEEEecCCCCCCceE
Q 024842          128 HEAYLLFPVHLDGTLL-DHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHS-LEPPYAHNDVKPGNILITCRKGQPPLAI  205 (262)
Q Consensus       128 ~~~~~v~~~~~~~~L~-~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~-~~~~ivH~dikp~Nill~~~~~~~~~~k  205 (262)
                      ....++|||....... -.+     ...++..++...+..+++..+.-|-. .+  +||+||..=|||+.. +    .+.
T Consensus       139 ~~nVLvMEfIg~~g~pAP~L-----kDv~~e~~e~~~~~~~~v~~~~~l~~~a~--LVHgDLSEyNiL~~~-~----~p~  206 (268)
T COG1718         139 RNNVLVMEFIGDDGLPAPRL-----KDVPLELEEAEGLYEDVVEYMRRLYKEAG--LVHGDLSEYNILVHD-G----EPY  206 (268)
T ss_pred             cCCeEEEEeccCCCCCCCCc-----ccCCcCchhHHHHHHHHHHHHHHHHHhcC--cccccchhhheEEEC-C----eEE
Confidence            3468899987554211 111     12223444677777888888887776 77  999999999999983 3    499


Q ss_pred             Eeeccceeecccc
Q 024842          206 LMDFGSARPAQSK  218 (262)
Q Consensus       206 l~Dfg~a~~~~~~  218 (262)
                      ++||+-|.....+
T Consensus       207 iID~~QaV~~~hp  219 (268)
T COG1718         207 IIDVSQAVTIDHP  219 (268)
T ss_pred             EEECccccccCCC
Confidence            9999999876644

>PF01636 APH: Phosphotransferase enzyme family This family is part of the larger protein kinase superfamily

Probab=98.21  E-value=1.3e-05  Score=63.26  Aligned_cols=81  Identities=23%  Similarity=0.258  Sum_probs=52.9

Q ss_pred             EEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCCCCC--cc
Q 024842           31 LRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSHRN--LL  108 (262)
Q Consensus        31 ~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~h~~--i~  108 (262)
                      ++.++.|..+.||+.....                        +.+++|.....  .....+..|..+++.+....  ++
T Consensus         2 i~~l~~G~~n~~~~v~~~~------------------------~~~vlK~~~~~--~~~~~~~~e~~~~~~l~~~~~pvP   55 (239)
T PF01636_consen    2 IRPLSGGFSNRVYRVTTDD------------------------GRYVLKFYRPP--DAAERLRREAAVLRQLAEHGIPVP   55 (239)
T ss_dssp             EEEEEESSSSEEEEEEETT------------------------SEEEEEEESSH--HHHHHHHHHHHHHHHHHHTTSBS-
T ss_pred             CccCCCCCeeeEEEEEECC------------------------cEEEEEEeCCC--CCHHHHHHHHHHHHHHHhcCCCCc
Confidence            4679999999999988653                        36888876544  44567778888887775332  34


Q ss_pred             chhhhhHHHhhhccCCCCcceeEEEEeecCCCchhh
Q 024842          109 PLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLD  144 (262)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~  144 (262)
                      +++....       ........+.+|+++.+.++..
T Consensus        56 ~~~~~~~-------~~~~~~~~~~~~~~i~g~~~~~   84 (239)
T PF01636_consen   56 RVLAFDT-------SDEFNGFPYLLMEYIPGRPLDD   84 (239)
T ss_dssp             -EEEEEE-------ETEETSEEEEEEEEESSEEHHH
T ss_pred             eEEeecc-------cccccccceEEEEEeccccccc
Confidence            4443110       1122344789999999887766

; InterPro: IPR002575 This entry consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include:- aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation []. The proteins are found in a range of taxonomic groups.; PDB: 2PPQ_A 2Q83_B 3TDV_B 3TDW_A 3I0O_A 3I0Q_A 3I1A_B 3Q2M_A 3HAV_C 2PUI_B ....

>cd05150 APH Aminoglycoside 3'-phosphotransferase (APH)

Probab=98.04  E-value=3.3e-05  Score=61.68  Aligned_cols=31  Identities=23%  Similarity=0.269  Sum_probs=25.7

Q ss_pred             CCeeecCCCCCcEEEecCCCCCCceEEeeccceee
Q 024842          180 PPYAHNDVKPGNILITCRKGQPPLAILMDFGSARP  214 (262)
Q Consensus       180 ~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~  214 (262)
                      +.++|+|+.|.|||++.++    ...|+||+.+..
T Consensus       163 ~~l~HgD~~~~Nil~~~~~----~~~iIDwe~a~~  193 (244)
T cd05150         163 LVVTHGDACLPNIIVDPGK----FSGFIDLGRLGV  193 (244)
T ss_pred             eEEECCCCCCccEEEeCCc----EEEEEEcccccc
Confidence            3489999999999998654    567999998854

The APH subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). APH catalyzes the transfer of the gamma-phosphoryl group from ATP to aminoglycoside antibiotics such as kanamycin, streptomycin, neomycin, and gentamicin, among others. The aminoglycoside antibiotics target the 30S ribosome and promote miscoding, leading to the production of defective proteins which insert into the bacterial membrane, resulting in membrane damage and the ultimate demise of the bacterium. Phosphorylation of the aminoglycoside antibiotics results in their inactivation, leading to bacterial antibiotic resistance. The APH gene is found on transposons and plasmids and is thought to have originated as a self-defense mechanism used by microorganisms that produce the antibio

>PF10707 YrbL-PhoP_reg: PhoP regulatory network protein YrbL; InterPro: IPR019647 This entry represents proteins that are activated by the protein PhoP

Probab=98.02  E-value=6.8e-05  Score=57.62  Aligned_cols=98  Identities=19%  Similarity=0.215  Sum_probs=63.9

Q ss_pred             HHHHHHHHHhhhCC------CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCC--C----chhhHHHHhhhcCCCCC
Q 024842           90 EMVREEIRVSSLFS------HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLD--G----TLLDHAKVMQTKKEFFS  157 (262)
Q Consensus        90 ~~~~~E~~~l~~l~------h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~----~L~~~~~~~~~~~~~~~  157 (262)
                      .+..+|+.....+.      +.+|.++++..          ++..-.-+++|...+  |    +|.+++.     ...++
T Consensus        56 ~~~~~E~~~y~~l~~~~~~~~~~i~r~~G~v----------eT~~G~Glv~e~I~d~dG~~s~TL~~~l~-----~~~~~  120 (199)
T PF10707_consen   56 RQNRRELRYYKQLSLRRGVDWSHIPRFYGFV----------ETNLGLGLVVELIRDADGNISPTLEDYLK-----EGGLT  120 (199)
T ss_pred             HHHHHHHHHHHHHhhccCCcccccccEeEEE----------ecCCceEEEEEEEECCCCCcCccHHHHHH-----cCCcc
Confidence            44555655544443      78889999886          445556777776432  3    4555552     23365


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCeeecCCCCCcEEEecCCCCCCceEEee
Q 024842          158 TSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMD  208 (262)
Q Consensus       158 ~~~~~~i~~ql~~~l~~lH~~~~~ivH~dikp~Nill~~~~~~~~~~kl~D  208 (262)
                      + .....+.++   ..+|-+..  |+.+|++|+||++...++....+.|+|
T Consensus       121 ~-~~~~~L~~f---~~~l~~~~--Iv~~dl~~~NIv~~~~~~~~~~lvlID  165 (199)
T PF10707_consen  121 E-ELRQALDEF---KRYLLDHH--IVIRDLNPHNIVVQRRDSGEFRLVLID  165 (199)
T ss_pred             H-HHHHHHHHH---HHHHHHcC--CeecCCCcccEEEEecCCCceEEEEEe
Confidence            5 444444444   44555666  999999999999988776655788887

PhoP controls the expression of a large number of genes that mediate adaptation to low Mg2+ environments and/or virulence in several bacterial species. YbrL is proposed to be acting in a loop activity with PhoP and PrmA analogous to the multi-component loop in Salmonella sp., where the PhoP-dependent PmrD protein activates the regulatory protein PmrA, and the activated PmrA then represses transcription from the PmrD promoter which harbours binding sites for both the PhoP and PmrA proteins. Expression of YrbL is induced in low Mg2+ in a PhoP-dependent fashion and repressed by Fe3+ in a PmrA-dependent manner [].

>PLN02876 acyl-CoA dehydrogenase

Probab=97.99  E-value=0.00011  Score=68.92  Aligned_cols=84  Identities=14%  Similarity=0.155  Sum_probs=52.0

Q ss_pred             EEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc-hHHHHHHHHHHHHhhhCC-CCCc-
Q 024842           31 LRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN-NEQLEMVREEIRVSSLFS-HRNL-  107 (262)
Q Consensus        31 ~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~-~~~~~~~~~E~~~l~~l~-h~~i-  107 (262)
                      .+.++.|.++.+|+......+.                    ...+++|+..... ......+.+|..+++.+. |+++ 
T Consensus        43 v~~l~gG~sn~ty~l~~~~~~~--------------------~~~~VLR~~p~~~~~~~~~~~~rE~~~l~~L~~~~~vp  102 (822)
T PLN02876         43 VSQFGHGQSNPTFLLEVGNGGS--------------------VKRYVLRKKPPGKLLQSAHAVEREYQVLRALGEHTDVP  102 (822)
T ss_pred             EEEeCCCCcCceEEEEECCCCc--------------------ceeEEEEeCCCCccCccHHHHHHHHHHHHHHhhcCCCC
Confidence            6778999999999887543211                    1246666654322 112346778999999885 6654 


Q ss_pred             -cchhhhhHHHhhhccCCCCcceeEEEEeecCCCc
Q 024842          108 -LPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGT  141 (262)
Q Consensus       108 -~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  141 (262)
                       ++++..+.       .....+..|++||++.+..
T Consensus       103 VP~v~~~~~-------d~~v~G~~flVME~v~G~~  130 (822)
T PLN02876        103 VPKVYCLCT-------DASVIGTAFYIMEYLEGRI  130 (822)
T ss_pred             CCcEEEEec-------CCCcCCCceEEEEecCCcc
Confidence             44444431       1112346789999988754

>COG2112 Predicted Ser/Thr protein kinase [Signal transduction mechanisms]

Probab=97.95  E-value=1.8e-05  Score=58.83  Aligned_cols=130  Identities=15%  Similarity=0.180  Sum_probs=85.2

Q ss_pred             EEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCCCCCcc
Q 024842           29 RILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSHRNLL  108 (262)
Q Consensus        29 ~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~h~~i~  108 (262)
                      +..+.|++|.+|.||++.+...                        .+++|+...+..  ...++.|++++..++-.++-
T Consensus        25 ~v~~~L~KG~~s~Vyl~~~~~~------------------------~~a~Kvrr~ds~--r~~l~kEakiLeil~g~~~~   78 (201)
T COG2112          25 RVEKELAKGTTSVVYLGEWRGG------------------------EVALKVRRRDSP--RRNLEKEAKILEILAGEGVT   78 (201)
T ss_pred             hhhhhhhcccccEEEEeeccCc------------------------eEEEEEecCCcc--hhhHHHHHHHHHHhhhcCCC
Confidence            5577899999999999998643                        678886655433  46788999999998765553


Q ss_pred             c-hhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeeecCC
Q 024842          109 P-LLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDV  187 (262)
Q Consensus       109 ~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~di  187 (262)
                      + ++.+              +..++.|+|..|.+|.+...    .   ....++..+    +..---|-..|  |-|+.|
T Consensus        79 p~vy~y--------------g~~~i~me~i~G~~L~~~~~----~---~~rk~l~~v----lE~a~~LD~~G--I~H~El  131 (201)
T COG2112          79 PEVYFY--------------GEDFIRMEYIDGRPLGKLEI----G---GDRKHLLRV----LEKAYKLDRLG--IEHGEL  131 (201)
T ss_pred             ceEEEe--------------chhhhhhhhhcCcchhhhhh----c---ccHHHHHHH----HHHHHHHHHhc--cchhhh
Confidence            3 2322              23344599999888877653    1   133343333    33333344556  888888


Q ss_pred             C-CCcEEEecCCCCCCceEEeeccceeec
Q 024842          188 K-PGNILITCRKGQPPLAILMDFGSARPA  215 (262)
Q Consensus       188 k-p~Nill~~~~~~~~~~kl~Dfg~a~~~  215 (262)
                      . |...++..+.    .+.|+||..|+.-
T Consensus       132 ~~~~k~vlv~~~----~~~iIDFd~At~k  156 (201)
T COG2112         132 SRPWKNVLVNDR----DVYIIDFDSATFK  156 (201)
T ss_pred             cCCceeEEecCC----cEEEEEccchhhc
Confidence            6 4444454443    4899999999743

>cd05155 APH_ChoK_like_1 Uncharacterized bacterial proteins with similarity to Aminoglycoside 3'-phosphotransferase (APH) and Choline kinase (ChoK) family members

Probab=97.89  E-value=0.00011  Score=58.27  Aligned_cols=31  Identities=32%  Similarity=0.671  Sum_probs=24.8

Q ss_pred             CeeecCCCCCcEEEecCCCCCCceEEeeccceeec
Q 024842          181 PYAHNDVKPGNILITCRKGQPPLAILMDFGSARPA  215 (262)
Q Consensus       181 ~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~  215 (262)
                      .++|+|++|.|++++.+.    ..-|+||+.+..-
T Consensus       165 ~l~HGD~~~~Nvlv~~~~----i~giIDw~~a~~g  195 (235)
T cd05155         165 VWFHGDLAPGNLLVQDGR----LSAVIDFGCLGVG  195 (235)
T ss_pred             eEEeCCCCCCcEEEECCC----EEEEEeCcccCcC
Confidence            389999999999997543    4569999988543

The APH/ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates, such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides, and macrolides leads to their inactivation and to bacterial antibiotic resista

>COG4248 Uncharacterized protein with protein kinase and helix-hairpin-helix DNA-binding domains [General function prediction only]

Probab=97.85  E-value=0.00013  Score=61.35  Aligned_cols=194  Identities=16%  Similarity=0.116  Sum_probs=104.8

Q ss_pred             EEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCCCCCcc
Q 024842           29 RILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSHRNLL  108 (262)
Q Consensus        29 ~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~h~~i~  108 (262)
                      .....||+|+-+.+|-.-.-.                         --+.|++.........+...|  +.+--.||-+-
T Consensus        14 ~~gr~LgqGgea~ly~l~e~~-------------------------d~VAKIYh~Pppa~~aqk~a~--la~~p~~p~~~   66 (637)
T COG4248          14 PPGRPLGQGGEADLYTLGEVR-------------------------DQVAKIYHAPPPAAQAQKVAE--LAATPDAPLLN   66 (637)
T ss_pred             CCCccccCCccceeeecchhh-------------------------chhheeecCCCchHHHHHHHH--hccCCCCcchh
Confidence            456789999999999533211                         124455444433322222222  22223455443


Q ss_pred             chhhhhHHHhhhccCCCCcce-eEEEEeecCCC-chhhHHHHhhhcC--CCCCHHHHHHHHHHHHHHHHHHHcCCCCeee
Q 024842          109 PLLDHAIIAVKANQEGSWKHE-AYLLFPVHLDG-TLLDHAKVMQTKK--EFFSTSDVLQIFYQICAGLKHMHSLEPPYAH  184 (262)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~-~L~~~~~~~~~~~--~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH  184 (262)
                      .-+.+-.    +...+..... .-+.|+...+. .+..+..-.-.++  .-..+..+++.++.|+.+.+.||..|  .+-
T Consensus        67 ~rvaWPq----a~L~G~~~~~~iGflmP~v~g~~pI~~~y~p~tRRqs~P~~~w~fllrvaRnlA~aFA~lH~~G--h~v  140 (637)
T COG4248          67 YRVAWPQ----ATLHGGRRGKVIGFLMPKVSGKEPIHMIYSPATRRQSYPHCAWDFLLRVARNLASAFATLHEHG--HVV  140 (637)
T ss_pred             hhhcccH----HHhhCCCccceeEEecccCCCccchhhhcCchhhcccCCccccHHHHHHHHHHHHHHHHHHhcC--Ccc
Confidence            3222221    1112233333 77888877664 2222221111111  23688999999999999999999988  888


Q ss_pred             cCCCCCcEEEecCCCCCCceEEeeccceeeccccC----ccCcccCCcccch--hhhhhhhhhhhhcCcccchheeheec
Q 024842          185 NDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF----ALGQRRYSCRNGL--LSIVLHLSELLSCGTVRVIQILMREL  258 (262)
Q Consensus       185 ~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~~~~~~~~d~--~s~g~~~~e~~~~~~v~~~g~~~~~l  258 (262)
                      ||++++|+|+++++    .+.|.|=..-..-....    ..+...|++||--  -++-  -.+-....|.|-++++++++
T Consensus       141 GDVn~~~~lVsd~~----~V~LVdsDsfqi~~ng~~~~cpVg~~eftPPElQ~~~sf~--g~~r~~~hD~FGLavLiF~l  214 (637)
T COG4248         141 GDVNQNSFLVSDDS----KVVLVDSDSFQINANGTLHLCPVGVSEFTPPELQTLPSFV--GFERTANHDNFGLAVLIFHL  214 (637)
T ss_pred             cccCccceeeecCc----eEEEEcccceeeccCCceEecccCccccCCHHHhcccccc--ccCCCccccchhHHHHHHHH
Confidence            99999999999887    68887643222111111    1355566666522  1110  11111224555556666655


Q ss_pred             ccC
Q 024842          259 MFG  261 (262)
Q Consensus       259 ~~G  261 (262)
                      +.|
T Consensus       215 L~g  217 (637)
T COG4248         215 LFG  217 (637)
T ss_pred             Hhc
Confidence            544

>PF12260 PIP49_C: Protein-kinase domain of FAM69; InterPro: IPR022049 Family with sequence similarity 69 has three members (A, B and C)

Probab=97.78  E-value=0.00012  Score=56.01  Aligned_cols=105  Identities=14%  Similarity=0.084  Sum_probs=77.2

Q ss_pred             HHHHHhhhCCC-CCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHH
Q 024842           94 EEIRVSSLFSH-RNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGL  172 (262)
Q Consensus        94 ~E~~~l~~l~h-~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l  172 (262)
                      .|..+++.+++ ++++++++.+             + .+++.|+...+++...-... ..-...+|..+..++.+++..+
T Consensus         8 ~E~lll~~l~~~~~~pk~lG~C-------------G-~~~v~E~~~~~~~~~~~~~l-~~~~~~~w~~R~~iA~~lL~~l   72 (188)
T PF12260_consen    8 NEPLLLQLLQGSEPFPKLLGSC-------------G-RFYVVEYVGAGSLYGIYRPL-SQFLQSPWEQRAKIALQLLELL   72 (188)
T ss_pred             cHHHHHHHcCCCCCCCCeeeEC-------------C-CEEEEEeecCcccccccccc-ccccccCHHHHHHHHHHHHHHH
Confidence            47778888876 6889999876             2 35678888766554210000 0112268999999999999999


Q ss_pred             HHHHcCC-CCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccc
Q 024842          173 KHMHSLE-PPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQS  217 (262)
Q Consensus       173 ~~lH~~~-~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~  217 (262)
                      .+++..- ..+.-.|++|+|+-++.++    .+|++|...+...+.
T Consensus        73 ~~l~~~~~~~~~lcDv~~~nfgv~~~~----~lk~iDld~v~~~~~  114 (188)
T PF12260_consen   73 EELDHGPLGFFYLCDVSPDNFGVNDDG----RLKLIDLDDVFVEDK  114 (188)
T ss_pred             HHHhcCCCCcEEEeecchHHeEEeCCC----cEEEEechhcchhHH
Confidence            9999731 1489999999999999776    699999998775543

Proteins in this uncharacterised family are described as transmembrane proteins.

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=97.75  E-value=3.9e-06  Score=77.14  Aligned_cols=147  Identities=15%  Similarity=0.162  Sum_probs=96.2

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc---chHHHHHHHHHHHHhhh
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ---NNEQLEMVREEIRVSSL  101 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~---~~~~~~~~~~E~~~l~~  101 (262)
                      .+.+.+.+.+-.+.++.++.+.-..++...                      +++.....   .....+....+-.++-.
T Consensus       803 ~d~~~i~~p~qS~sp~ss~p~~pa~sgh~~----------------------~~~v~~~ap~i~~~~~~s~r~~s~~~i~  860 (1205)
T KOG0606|consen  803 PDGFEITKPSQSGSPSSSFPASPAGSGHTR----------------------PSKVHGLAPKIRTNDYESIRSKSNILIT  860 (1205)
T ss_pred             CccceecccccCCCCcccccCCcccccccc----------------------chhhhccchhhccccccccCCccCcccc
Confidence            456788888999999999987766554321                      11111110   00011111222222222


Q ss_pred             CCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCC
Q 024842          102 FSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPP  181 (262)
Q Consensus       102 l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~  181 (262)
                      ..+|-++..+-.+          ......++++++..+++|...+.    ...+.+++-.......+..++++||...  
T Consensus       861 p~~P~v~~~~~s~----------~~rsP~~L~~~~~~~~~~~Skl~----~~~~~saepaRs~i~~~vqs~e~L~s~~--  924 (1205)
T KOG0606|consen  861 PRSPAVVRSFPSF----------PCRSPLPLVGHYLNGGDLPSKLH----NSGCLSAEPARSPILERVQSLESLHSSL--  924 (1205)
T ss_pred             CCCCceecccCCC----------CCCCCcchhhHHhccCCchhhhh----cCCCcccccccchhHHHHhhhhccccch--
Confidence            3445555544332          33677899999999999988776    4445666777777888999999999976  


Q ss_pred             eeecCCCCCcEEEecCCCCCCceEEeecccee
Q 024842          182 YAHNDVKPGNILITCRKGQPPLAILMDFGSAR  213 (262)
Q Consensus       182 ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~  213 (262)
                      +.|+|++|+|++...++    ..+++||++..
T Consensus       925 r~h~~~~p~~~l~~~~g----h~~l~~~~t~~  952 (1205)
T KOG0606|consen  925 RKHRDLKPDSLLIAYDG----HRPLTDFGTLS  952 (1205)
T ss_pred             hhcccccccchhhcccC----CcccCcccccc
Confidence            89999999999997776    57788887443

>PRK09550 mtnK methylthioribose kinase; Reviewed

Probab=97.72  E-value=0.00065  Score=57.91  Aligned_cols=29  Identities=24%  Similarity=0.307  Sum_probs=25.2

Q ss_pred             CeeecCCCCCcEEEecCCCCCCceEEeeccceee
Q 024842          181 PYAHNDVKPGNILITCRKGQPPLAILMDFGSARP  214 (262)
Q Consensus       181 ~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~  214 (262)
                      .++|||++|.|||+..++     ++++||..|..
T Consensus       224 ~l~HgDl~~gni~~~~~~-----~~viD~E~a~~  252 (401)
T PRK09550        224 ALLHGDLHTGSIFVTEEE-----TKVIDPEFAFY  252 (401)
T ss_pred             ceeeccCCcccEEeeCCC-----cEEEecccccc
Confidence            489999999999997654     89999998764

>PRK10593 hypothetical protein; Provisional

Probab=97.64  E-value=0.00077  Score=55.50  Aligned_cols=82  Identities=9%  Similarity=0.026  Sum_probs=51.7

Q ss_pred             eEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCCC---
Q 024842           28 YRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSH---  104 (262)
Q Consensus        28 y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~h---  104 (262)
                      -.-.+.|+.|..+.||......                        +.+++|..+.  ......+..|...++.+.-   
T Consensus        16 ~~~~~~i~~G~~~~vy~~~~~~------------------------~~~~~k~~~~--~~~~~~~~~Ea~~L~~L~~~~~   69 (297)
T PRK10593         16 LSRVECISEQPYAALWALYDSQ------------------------GNPMPLMARS--FSTPGVAQQEAWKLSMLARSGT   69 (297)
T ss_pred             hheeeecCCccceeEEEEEcCC------------------------CCEEEEEecc--cccchHHHHHHHHHHHHccCCC
Confidence            3446789999999999876431                        2455555322  1123577888888887753   


Q ss_pred             CCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCch
Q 024842          105 RNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTL  142 (262)
Q Consensus       105 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L  142 (262)
                      ..++++++.+.       .....+..+++||++.+.++
T Consensus        70 vpVP~V~~~~~-------~~~~~g~~~LVmE~i~G~~~  100 (297)
T PRK10593         70 VRMPTVYGVMT-------HEQSPGPDVLLLERLRGVSV  100 (297)
T ss_pred             CCcCcEEEEec-------cCCcCCCeEEEEeccCCEec
Confidence            34566665431       11224668999999887654

>TIGR02721 ycfN_thiK thiamine kinase

Probab=97.57  E-value=0.0002  Score=57.67  Aligned_cols=31  Identities=26%  Similarity=0.300  Sum_probs=25.7

Q ss_pred             CeeecCCCCCcEEEecCCCCCCceEEeeccceeecc
Q 024842          181 PYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQ  216 (262)
Q Consensus       181 ~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~  216 (262)
                      .++|+|+.|.||+++.++     +.|+||+.|..-.
T Consensus       147 ~l~H~Dl~~~Nil~~~~~-----~~lIDwE~a~~gd  177 (256)
T TIGR02721       147 APLHMDVHAYNLVVTPQG-----LKLIDWEYASDGD  177 (256)
T ss_pred             eeecCCCCcCcEEEeCCC-----CEEEeccccCcCC
Confidence            489999999999998655     7899999886433

Members of this family are the ycfN gene product of Escherichia coli, now identified as the salvage enzyme thiamine kinase (thiK), and additional proteobacterial homologs taken to be orthologs with equivalent function.

>PF13095 FTA2: Kinetochore Sim4 complex subunit FTA2

Probab=97.40  E-value=0.0024  Score=49.02  Aligned_cols=135  Identities=21%  Similarity=0.207  Sum_probs=82.9

Q ss_pred             CceEEEEEeecccc-eEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhc---c------------c----
Q 024842           26 NRYRILRQLGEGGF-AYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLI---Q------------N----   85 (262)
Q Consensus        26 ~~y~~~~~ig~G~~-g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~---~------------~----   85 (262)
                      .+++.++.||.|.- |.||+++...                        ..||+|.+..   .            .    
T Consensus        37 ~~I~flefLg~g~~~~~V~kv~I~g------------------------~~YALKlf~~~~~~~~~~~~~~~~~~~~~~~   92 (207)
T PF13095_consen   37 DDIEFLEFLGHGSHDGYVFKVEIDG------------------------RIYALKLFRFWDYTEPDYTRERFAGHETSLS   92 (207)
T ss_pred             CcEeeeeecCCCCceeEEEEEEECC------------------------eEEEEEEeeccccCCCccccccccccccccc
Confidence            78999999999999 9999988542                        3455554110   0            0    


Q ss_pred             --hHHHHHHHHHHHHhhhCC---CCCc--cchhhhhHHHh----hhc----cCCCCcceeEEEEeecCCCchhhHHHHhh
Q 024842           86 --NEQLEMVREEIRVSSLFS---HRNL--LPLLDHAIIAV----KAN----QEGSWKHEAYLLFPVHLDGTLLDHAKVMQ  150 (262)
Q Consensus        86 --~~~~~~~~~E~~~l~~l~---h~~i--~~~~~~~~~~~----~~~----~~~~~~~~~~~v~~~~~~~~L~~~~~~~~  150 (262)
                        ......|..|.+...+|+   +.++  ++.+++.....    ...    .........-+|.++.....         
T Consensus        93 ~~~~y~~PF~~ECRAfgRLke~~~e~~~Avkc~Gyl~L~~~~q~~~~~~~~~~~~~~~~~aIVKD~v~~~~---------  163 (207)
T PF13095_consen   93 TPAHYADPFNCECRAFGRLKEAGREGLWAVKCHGYLLLTEDQQFEQLRQRGSDHRPLPIRAIVKDFVPDDP---------  163 (207)
T ss_pred             hhhhhcChHHHHHHhhHHHHhccccCceEEEeeEEEEEchHHHHHHhhcccccCCCCccEEEEEeecCCcc---------
Confidence              012235677777765554   4455  77777763221    100    11122233445666544322         


Q ss_pred             hcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccce
Q 024842          151 TKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSA  212 (262)
Q Consensus       151 ~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a  212 (262)
                          .++.+    -+.+|.+-+..+|..|  |+-+|+++.|..=         -+|+|||.+
T Consensus       164 ----~~~~~----~~~~~~~dl~~~~k~g--I~~~Dv~~~ny~~---------G~lvDfs~~  206 (207)
T PF13095_consen  164 ----PLQIR----DIPQMLRDLKILHKLG--IVPRDVKPRNYRG---------GKLVDFSSS  206 (207)
T ss_pred             ----ccchh----HHHHHHHHHHHHHHCC--eeeccCccccccC---------CEEEecccC
Confidence                12222    2456777789999999  9999999999862         469999875

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=97.33  E-value=0.00023  Score=63.17  Aligned_cols=83  Identities=16%  Similarity=0.228  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccCc--------------cCcccCCcccch
Q 024842          167 QICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKFA--------------LGQRRYSCRNGL  232 (262)
Q Consensus       167 ql~~~l~~lH~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~~--------------~~~~~~~~~~d~  232 (262)
                      +++.|+.|+|.. ..+||++|.|++|.++..+    .+||+.|+.+.-..++..              .....|.+||.+
T Consensus       107 ~v~dgl~flh~s-Ak~VH~ni~p~~i~~na~~----~wkl~Gf~f~v~~~~~~~~p~~~yd~~lp~~~~~~~~f~apE~~  181 (700)
T KOG2137|consen  107 NVADGLAFLHRS-AKVVHGNIQPEAIVVNANG----DWKLAGFSFCVNANGPTEYPFSEYDPPLPLLLQPHLNFLAPEYL  181 (700)
T ss_pred             cccchhhhhccC-cceeecccchhheeeccCc----ceeeccchhhhccCCCCccccccCCCCCChhhccCcccccchhh
Confidence            444899999983 4599999999999998777    699999999886665332              233344555544


Q ss_pred             hhhhhhhhhhhhcCcccchheeheecc
Q 024842          233 LSIVLHLSELLSCGTVRVIQILMRELM  259 (262)
Q Consensus       233 ~s~g~~~~e~~~~~~v~~~g~~~~~l~  259 (262)
                      ...     -.....|++|+|+++|-+.
T Consensus       182 ~~~-----~~~~~sd~fSlG~li~~i~  203 (700)
T KOG2137|consen  182 LGT-----TNTPASDVFSLGVLIYTIY  203 (700)
T ss_pred             ccc-----cccccccceeeeeEEEEEe
Confidence            331     1122478999999888776

>PRK05231 homoserine kinase; Provisional

Probab=97.32  E-value=0.0058  Score=50.82  Aligned_cols=29  Identities=28%  Similarity=0.312  Sum_probs=24.3

Q ss_pred             CeeecCCCCCcEEEecCCCCCCceEEeecccee
Q 024842          181 PYAHNDVKPGNILITCRKGQPPLAILMDFGSAR  213 (262)
Q Consensus       181 ~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~  213 (262)
                      .+||+|++|+||+++.+.    ..-|+||+.+.
T Consensus       188 ~liHgD~~~~Nil~~~~~----~~~iIDf~~~~  216 (319)
T PRK05231        188 GVIHADLFRDNVLFEGDR----LSGFIDFYFAC  216 (319)
T ss_pred             ccCCCCCCCCcEEEECCc----eEEEEeccccc
Confidence            499999999999998544    35799999885

>TIGR01767 MTRK 5-methylthioribose kinase

Probab=97.27  E-value=0.0013  Score=55.11  Aligned_cols=31  Identities=19%  Similarity=0.283  Sum_probs=25.7

Q ss_pred             CeeecCCCCCcEEEecCCCCCCceEEeeccceeecc
Q 024842          181 PYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQ  216 (262)
Q Consensus       181 ~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~  216 (262)
                      .++|||+.+.||+++.++     ++++|+..+..-+
T Consensus       193 ~llHGDl~~gNi~~~~~~-----~~~iD~e~~~~G~  223 (370)
T TIGR01767       193 TLLHGDLHSGSIFVSEHE-----TKVIDPEFAFYGP  223 (370)
T ss_pred             eeeeccCCcccEEEcCCC-----CEEEcCcccccCc
Confidence            489999999999997655     7899999886433

This enzyme is involved in the methionine salvage pathway in certain bacteria.

>cd05157 ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes

Probab=97.25  E-value=0.0028  Score=50.21  Aligned_cols=30  Identities=27%  Similarity=0.464  Sum_probs=25.3

Q ss_pred             CeeecCCCCCcEEEec-CCCCCCceEEeeccceee
Q 024842          181 PYAHNDVKPGNILITC-RKGQPPLAILMDFGSARP  214 (262)
Q Consensus       181 ~ivH~dikp~Nill~~-~~~~~~~~kl~Dfg~a~~  214 (262)
                      .++|+|++|.|||++. ++    .+.|+||..|..
T Consensus       171 ~l~H~Dl~~~Nil~~~~~~----~~~lIDwe~a~~  201 (235)
T cd05157         171 VFCHNDLLSGNIIYNEEKN----SVKFIDYEYAGY  201 (235)
T ss_pred             EEEcCCCCcCcEEEeCCCC----CEEEEEcccCCc
Confidence            4899999999999986 33    599999998753

ETNK is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major phospholipid, phosphatidylethanolamine (PtdEtn). Unlike ChoK, ETNK shows specific activity for its substrate, and displays negligible activity towards N-methylated derivatives of Etn. The Drosophila ETNK is implicated in development and neuronal function. Mammals contain two ETNK proteins, ETNK1 and ETNK2. ETNK1 selectively increases Etn uptake and phosphorylation, as well as PtdEtn synthesis. ETNK2 is found primarily in the liver and reproductive tissues. It plays a critical role in regulating placental hemostasis to support late embryo

>cd05153 HomoserineK_II Homoserine Kinase, type II

Probab=97.20  E-value=0.0017  Score=53.32  Aligned_cols=30  Identities=27%  Similarity=0.285  Sum_probs=25.1

Q ss_pred             CeeecCCCCCcEEEecCCCCCCceEEeeccceee
Q 024842          181 PYAHNDVKPGNILITCRKGQPPLAILMDFGSARP  214 (262)
Q Consensus       181 ~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~  214 (262)
                      .++|+|++|.|++++.++    .+.|+||+.+..
T Consensus       176 ~l~HgD~~~~Nil~~~~~----~~~iIDfe~a~~  205 (296)
T cd05153         176 GVIHADLFRDNVLFDGDE----LSGVIDFYFACT  205 (296)
T ss_pred             cCCccCcCcccEEEeCCc----eEEEeehhhhcC
Confidence            499999999999998654    457999998763

Homoserine kinase is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of unusual homoserine kinases, from a subset of bacteria, which have a PK fold. These proteins do not bear any similarity to the GHMP family homoserine kinases present in most bacteria and eukaryotes. Homoserine kinase catalyzes the transfer of the gamma-phosphoryl group from ATP to L-homoserine producing L-homoserine phosphate, an intermediate in the production of the amino acids threonine, methionine, and isoleucine.

>PLN02756 S-methyl-5-thioribose kinase

Probab=97.14  E-value=0.0053  Score=52.42  Aligned_cols=31  Identities=19%  Similarity=0.285  Sum_probs=25.8

Q ss_pred             CCeeecCCCCCcEEEecCCCCCCceEEeeccceeec
Q 024842          180 PPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPA  215 (262)
Q Consensus       180 ~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~  215 (262)
                      ...+|||++|.||+++.++     .+++|..++..-
T Consensus       230 ~~L~HGDl~~g~i~~~~~~-----~~~id~ef~~~g  260 (418)
T PLN02756        230 QALVHGDLHTGSVMVTPDS-----TQVIDPEFAFYG  260 (418)
T ss_pred             cceeecCCCCCcEEEcCCC-----ceEecchhhccC
Confidence            4699999999999998765     889998877543

>TIGR00938 thrB_alt homoserine kinase, Neisseria type

Probab=97.00  E-value=0.006  Score=50.47  Aligned_cols=29  Identities=28%  Similarity=0.336  Sum_probs=25.1

Q ss_pred             CeeecCCCCCcEEEecCCCCCCceEEeecccee
Q 024842          181 PYAHNDVKPGNILITCRKGQPPLAILMDFGSAR  213 (262)
Q Consensus       181 ~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~  213 (262)
                      .++|+|+++.|++++.++    ...|+||+.+.
T Consensus       188 ~l~HgD~~~~Nvl~~~~~----~~~vIDfd~~~  216 (307)
T TIGR00938       188 GVIHADLFPDNVLFDGDS----VKGVIDFYFAC  216 (307)
T ss_pred             ccCCCCCCcCcEEEECCc----eEEEeeccccc
Confidence            499999999999998765    46799999885

Homoserine kinase is required in the biosynthesis of threonine from aspartate.The member of this family from Pseudomonas aeruginosa was shown by direct assay and complementation to act specifically as a homoserine kinase.

>PRK12396 5-methylribose kinase; Reviewed

Probab=96.86  E-value=0.0032  Score=53.41  Aligned_cols=31  Identities=16%  Similarity=0.253  Sum_probs=26.5

Q ss_pred             CeeecCCCCCcEEEecCCCCCCceEEeeccceeecc
Q 024842          181 PYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQ  216 (262)
Q Consensus       181 ~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~  216 (262)
                      ..+|||++|.|||++.+.     .|++|..+|..-+
T Consensus       228 aLlHGDlHtGSI~v~~~~-----~kvIDpEFAfyGP  258 (409)
T PRK12396        228 ALIHGDLHTGSVFVKNDS-----TKVIDPEFAFYGP  258 (409)
T ss_pred             hhccCcCCCCCEEecCCc-----eEEEcccccccCC
Confidence            489999999999998766     9999999986443

>KOG2268 consensus Serine/threonine protein kinase [Signal transduction mechanisms; General function prediction only]

Probab=96.75  E-value=0.0054  Score=50.45  Aligned_cols=135  Identities=11%  Similarity=0.121  Sum_probs=84.5

Q ss_pred             ceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc------------------chHH
Q 024842           27 RYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ------------------NNEQ   88 (262)
Q Consensus        27 ~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~------------------~~~~   88 (262)
                      -+.++.+||-|.-+.||.+-+....                       +.++|.-...                  ...+
T Consensus        93 v~svGnqIGVGKESDIY~v~d~~G~-----------------------~~~lK~HRLGRtSFR~Vk~kRDY~r~r~~~sW  149 (465)
T KOG2268|consen   93 VESVGNQIGVGKESDIYVVADEEGN-----------------------PLILKLHRLGRTSFRNVKNKRDYLRKRKSGSW  149 (465)
T ss_pred             hhhhccccccccccceEEEecCCCC-----------------------chhHHHHhhhhhhHHHhhhhhhhHhcCCccch
Confidence            3577899999999999999876443                       3344321110                  0111


Q ss_pred             ----HHHHHHHHHHhhhCC-CC-CccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHH
Q 024842           89 ----LEMVREEIRVSSLFS-HR-NLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVL  162 (262)
Q Consensus        89 ----~~~~~~E~~~l~~l~-h~-~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~  162 (262)
                          .-...+|...++.|. |. -+++.++              ..+.+++|++..+.+|.+.-.       ....+++.
T Consensus       150 lyLSRlaa~kEfafmkaL~e~gfpVPkpiD--------------~~RH~Vvmelv~g~Pl~~v~~-------v~d~~~ly  208 (465)
T KOG2268|consen  150 LYLSRLAATKEFAFMKALYERGFPVPKPID--------------HNRHCVVMELVDGYPLRQVRH-------VEDPPTLY  208 (465)
T ss_pred             hhhHHHHHHHHHHHHHHHHHcCCCCCCccc--------------ccceeeHHHhhcccceeeeee-------cCChHHHH
Confidence                112346777777774 22 2333343              456788999999988876432       12334444


Q ss_pred             HHHHHHHHHHHHHHcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceee
Q 024842          163 QIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARP  214 (262)
Q Consensus       163 ~i~~ql~~~l~~lH~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~  214 (262)
                      .-+..+   +--|-..|  +||||.+-=||++..++    .++++||=-+..
T Consensus       209 ~~lm~~---Iv~la~~G--lIHgDFNEFNimv~dd~----~i~vIDFPQmvS  251 (465)
T KOG2268|consen  209 DDLMGL---IVRLANHG--LIHGDFNEFNIMVKDDD----KIVVIDFPQMVS  251 (465)
T ss_pred             HHHHHH---HHHHHHcC--ceecccchheeEEecCC----CEEEeechHhhc
Confidence            333333   33344557  99999999999998766    599999965543

>cd05152 MPH2' Macrolide 2'-Phosphotransferase (MPH2')

Probab=96.58  E-value=0.026  Score=45.94  Aligned_cols=33  Identities=30%  Similarity=0.516  Sum_probs=25.5

Q ss_pred             CeeecCCCCCcEEEecCCCCCCceEEeeccceeecc
Q 024842          181 PYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQ  216 (262)
Q Consensus       181 ~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~  216 (262)
                      .++|+|++|.||+++.++.   ..-|+||+.+..-+
T Consensus       186 ~lvHGD~~~~Nilv~~~~~---~~gviDWe~a~iGD  218 (276)
T cd05152         186 VLVHGDLHPGHILIDEDAR---VTGLIDWTEAKVGD  218 (276)
T ss_pred             eeEeCCCCCCcEEEeCCCC---EEEEECcHhcccCC
Confidence            4899999999999985331   35599999986443

MPH2' is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). MPH2' catalyzes the transfer of the gamma-phosphoryl group from ATP to the 2'-hydroxyl of macrolide antibiotics such as erythromycin, clarithromycin, and azithromycin, among others. Macrolides penetrate the bacterial cell and bind to ribosomes, where it interrupts protein elongation, leading ultimately to the demise of the bacterium. Phosphorylation of macrolides leads to their inactivation. Based on substrate specificity and amino acid sequence, MPH2' is divided into types I and II, encoded by mphA and mphB genes, respectively. MPH2'I inactivates 14-membered ring macrolides while MPH2'II inactivates both 14- and 16-membered ring macrolides. Enzymatic inactivation of macrolides has been reported

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=96.57  E-value=0.00056  Score=62.77  Aligned_cols=71  Identities=14%  Similarity=0.175  Sum_probs=44.5

Q ss_pred             eecCCCCCc-EEEecCCCCCCceEEeeccceeeccc-------cCccCcccCCcccchhhhhhhhhhhhhcCcccchhee
Q 024842          183 AHNDVKPGN-ILITCRKGQPPLAILMDFGSARPAQS-------KFALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQIL  254 (262)
Q Consensus       183 vH~dikp~N-ill~~~~~~~~~~kl~Dfg~a~~~~~-------~~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~  254 (262)
                      -+++..|.+ ++++..+    ..++.||+.+.....       ....++..|.+||.+...++     -...|||++|++
T Consensus       499 ~~~~~~p~~~~~~~p~~----~~~~~~~~~~~~~~~g~~~~~~~~~vGT~~Y~APE~l~~~~~-----~~~~DiwSlG~i  569 (669)
T cd05610         499 PTQKPRPHGNLYQTPKQ----VKIGTPYRTPKSVRRGAAPVEGERILGTPDYLAPELLLGKPH-----GPAVDWWALGVC  569 (669)
T ss_pred             CCCCCCCCCceeECCcc----ccccccCCCchhhhcccccccCCceeeCccccCHHHcCCCCC-----CcHHHHHHHHHH
Confidence            445666664 4444333    467888988765432       12357888888887644322     123588888888


Q ss_pred             heecccCC
Q 024842          255 MRELMFGR  262 (262)
Q Consensus       255 ~~~l~~G~  262 (262)
                      +|||++|+
T Consensus       570 l~ElltG~  577 (669)
T cd05610         570 LFEFLTGI  577 (669)
T ss_pred             HHHHHHCC
Confidence            88888874

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>PF07387 Seadorna_VP7: Seadornavirus VP7; InterPro: IPR009973 This family consists of several Seadornavirus specific VP7 proteins of around 305 residues in length

Probab=96.57  E-value=0.017  Score=45.00  Aligned_cols=103  Identities=16%  Similarity=0.062  Sum_probs=65.7

Q ss_pred             ceeehhhhccchH-HHHHHHHHHHHhhhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcC
Q 024842           75 TYAMKKVLIQNNE-QLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKK  153 (262)
Q Consensus        75 ~~~ik~~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~  153 (262)
                      +..+|++....-. ...-+..+..+++++.  .|+++..            ......-++.|.|......-         
T Consensus        87 ~L~lKKi~slp~~~~~~~y~nky~v~Armh--GilrL~N------------Dn~~~yGvIlE~Cy~~~i~~---------  143 (308)
T PF07387_consen   87 PLFLKKIRSLPCCINDALYFNKYRVFARMH--GILRLKN------------DNNYKYGVILERCYKIKINF---------  143 (308)
T ss_pred             hhhhhhccCCCcccchhhhhhhhhHHHHhh--heeEeec------------CCCceeEEEEeeccCcccch---------
Confidence            5566766544322 2344566777777664  4555542            23556778889876422210         


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccce
Q 024842          154 EFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSA  212 (262)
Q Consensus       154 ~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a  212 (262)
                             . .++..=+.+|.-.|+.....+|||-.|+|||-+..+    .+||.|-+.-
T Consensus       144 -------~-N~i~agi~~L~~fH~~~~~~lHGD~np~NiM~D~~G----~lKlVDP~~L  190 (308)
T PF07387_consen  144 -------S-NFITAGIKDLMDFHSENQHCLHGDCNPDNIMCDKFG----YLKLVDPVCL  190 (308)
T ss_pred             -------h-HHHHHhHHHHHHhhccCCCeecCCCChhheeecCCC----CEEecChhhh
Confidence                   0 011111466888897666799999999999998888    6999998764

The function of this family is unknown.

>COG3173 Predicted aminoglycoside phosphotransferase [General function prediction only]

Probab=96.52  E-value=0.054  Score=44.85  Aligned_cols=33  Identities=24%  Similarity=0.432  Sum_probs=26.9

Q ss_pred             CeeecCCCCCcEEEecCCCCCCceEEeeccceeeccc
Q 024842          181 PYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQS  217 (262)
Q Consensus       181 ~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~  217 (262)
                      .++|||+++.|++++..+    -+=+.||+++..-++
T Consensus       199 ~lvHGD~~~gNlii~~~~----~~gVlDwe~~~lGDP  231 (321)
T COG3173         199 VLVHGDYRPGNLIIDPGR----PTGVLDWELATLGDP  231 (321)
T ss_pred             eeeeCCcccCCEEEeCCC----eeEEEeccccccCCc
Confidence            689999999999998665    267899999865443

>KOG2270 consensus Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning]

Probab=96.28  E-value=0.035  Score=46.68  Aligned_cols=103  Identities=14%  Similarity=0.081  Sum_probs=66.7

Q ss_pred             HHHHHHhhhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCC-chhhHHHHhhhcCCCCCHHHHHHHHHHHHHH
Q 024842           93 REEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDG-TLLDHAKVMQTKKEFFSTSDVLQIFYQICAG  171 (262)
Q Consensus        93 ~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~  171 (262)
                      ++|++.|+++....|+.+--+.            -....++|+|+-.. .-.-.+     ....++...+..+-.|++.-
T Consensus       214 EKE~RNLkRl~~aGIP~PePIl------------Lk~hVLVM~FlGrdgw~aPkL-----Kd~~ls~~ka~~~Y~~~v~~  276 (520)
T KOG2270|consen  214 EKEMRNLKRLNNAGIPCPEPIL------------LKNHVLVMEFLGRDGWAAPKL-----KDASLSTSKARELYQQCVRI  276 (520)
T ss_pred             HHHHHHHHHHHhcCCCCCCcee------------eecceEeeeeccCCCCcCccc-----ccccCChHHHHHHHHHHHHH
Confidence            4567777777655443332222            23467899987532 222222     23446767777777777777


Q ss_pred             HHHHHcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeecccc
Q 024842          172 LKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSK  218 (262)
Q Consensus       172 l~~lH~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~  218 (262)
                      +.-|-+. +.+||.||.-=|+|+....     +.++|.+-+....-|
T Consensus       277 MR~lY~~-c~LVHADLSEfN~LyhdG~-----lyiIDVSQSVE~DHP  317 (520)
T KOG2270|consen  277 MRRLYQK-CRLVHADLSEFNLLYHDGK-----LYIIDVSQSVEHDHP  317 (520)
T ss_pred             HHHHHHH-hceeccchhhhhheEECCE-----EEEEEccccccCCCh
Confidence            7766652 3499999999999997654     999999988765544

>PF03881 Fructosamin_kin: Fructosamine kinase; InterPro: IPR016477 Ketosamines derive from a non-enzymatic reaction between a sugar and a protein []

Probab=96.01  E-value=0.022  Score=46.65  Aligned_cols=76  Identities=16%  Similarity=0.253  Sum_probs=41.0

Q ss_pred             eEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCC---C
Q 024842           28 YRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFS---H  104 (262)
Q Consensus        28 y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~---h  104 (262)
                      -+-.+.++.|....+|+...                        +++.+.+|......   ...+..|..-|+.|.   .
T Consensus        19 i~~~~~v~GG~i~~a~~~~~------------------------~~~~~FvK~~~~~~---~~~f~~Ea~gL~~L~~~~~   71 (288)
T PF03881_consen   19 ITSIEPVSGGDINEAYRLDT------------------------DGGSYFVKVNSESG---RDMFEGEAEGLKALAEANP   71 (288)
T ss_dssp             --EEEEE--SSSSEEEEEET------------------------TS-EEEEEEEEGGG---CCHHHHHHHHHHHHCHTTT
T ss_pred             eeeeEecCCCChhheEEEEC------------------------CCccEEEEecChhh---HHHHHHHHHHHHHHHhcCC
Confidence            34467788899999998772                        23478888766322   245666776666663   4


Q ss_pred             CCccchhhhhHHHhhhccCCCCcceeEEEEeecCCC
Q 024842          105 RNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDG  140 (262)
Q Consensus       105 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  140 (262)
                      -.+++++.+.          ...+..+++||++..+
T Consensus        72 ~~vP~vi~~G----------~~~~~~fLlle~l~~~   97 (288)
T PF03881_consen   72 IRVPKVIAWG----------EYDDDAFLLLEFLEMG   97 (288)
T ss_dssp             SBS--EEEEE----------E-SSCCEEEEE-----
T ss_pred             CCCCeEEEEE----------eecCCceEEEEeecCC
Confidence            4556666554          2234569999997655

Ketosamine-3-kinases (KT3K), of which fructosamine-3-kinase (FN3K) is the best-known example, catalyse the phosphorylation of the ketosamine moiety of glycated proteins. The instability of a phosphorylated ketosamine leads to its degradation, and KT3K is thus thought to be involved in protein repair []. The function of the prokaryotic members of this group has not been established. However, several lines of evidence indicate that they may function as fructosamine-3-kinases (FN3K). First, they are similar to characterised FN3K from mouse and human. Second, the Escherichia coli members are found in close proximity on the genome to fructose-6-phosphate kinase (PfkB). Last, FN3K activity has been found in a Anacystis montana (Gloeocapsa montana Kutzing 1843) [], indicating such activity-directly demonstrated in eukaryotes-is nonetheless not confined to eukaryotes. This family includes eukaryotic fructosamine-3-kinase enzymes [] which may initiate a process leading to the deglycation of fructoselysine and of glycated proteins and in the phosphorylation of 1-deoxy-1-morpholinofructose, fructoselysine, fructoseglycine, fructose and glycated lysozyme. The family also includes bacterial members that have not been characterised but probably have a similar or identical function. For additional information please see [].; PDB: 3JR1_B 3F7W_A.

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=95.86  E-value=0.0025  Score=56.56  Aligned_cols=153  Identities=14%  Similarity=0.092  Sum_probs=94.0

Q ss_pred             ceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCCCCC
Q 024842           27 RYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSHRN  106 (262)
Q Consensus        27 ~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~h~~  106 (262)
                      .+....-.++++.+.+++.+...+.                       ....+.+...     ....-++++|.+++|||
T Consensus       243 ws~~fh~fvK~altknpKkRptaek-----------------------lL~h~fvs~~-----l~~rl~~eLLdK~n~P~  294 (829)
T KOG0576|consen  243 WSEFFHNFVKGALTKNPKKRPTAEK-----------------------LLQHPFVSQT-----LSRRLAIELLDKVNNPN  294 (829)
T ss_pred             chHHHHHHHHHHhcCCCccCCChhh-----------------------heeceeeccc-----hhhHHHHHHHHHccCCC
Confidence            3555666788888888887755332                       2222222211     33455788999999999


Q ss_pred             -ccchhhhhHHHhhhccCCCCcceeEEEEeecCCC-chhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeee
Q 024842          107 -LLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDG-TLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAH  184 (262)
Q Consensus       107 -i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH  184 (262)
                       .+..++-+          ...+..++.++++..+ +.......   ....+.+-+...+.+.-+.+++++|+..  -+|
T Consensus       295 ~~v~~~~d~----------~~E~~~~i~~~i~s~~rs~~~~~~~---se~~~~~~~~~~~~r~et~~l~~l~~~~--~~~  359 (829)
T KOG0576|consen  295 PVVRYLEDY----------DGEDYLWIPMRICSTGRSSALEMTV---SEIALEQYQFAYPLRKETRPLAELHSSY--KVH  359 (829)
T ss_pred             CcccccccC----------CcccccchhhhhhcCCccccccCCh---hhHhhhhhhhhhhhhhhccccccccccc--ccC
Confidence             33333322          4466777888887766 22221111   1122444455666777888999999854  478


Q ss_pred             cCCCCCcEEEecCCCCCCceEEeeccceeecccc----CccCcccCCcccc
Q 024842          185 NDVKPGNILITCRKGQPPLAILMDFGSARPAQSK----FALGQRRYSCRNG  231 (262)
Q Consensus       185 ~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~----~~~~~~~~~~~~d  231 (262)
                      +|    ||+.+...     .++.||+....++..    ...+++.+.+|+.
T Consensus       360 ~d----~~l~s~~~-----~~~~~~~v~~~L~~~~~~~t~~~~~~~~~pev  401 (829)
T KOG0576|consen  360 RD----NILGSEEE-----VKLLDFAVPPQLTRTMKPRTAIGTPEPLAPEV  401 (829)
T ss_pred             cc----cccccccc-----cccccccCCcccCcccccccCCCCCCCCCchh
Confidence            87    88886543     889999987765533    3345556666653

>COG5072 ALK1 Serine/threonine kinase of the haspin family [Cell division and chromosome partitioning]

Probab=95.76  E-value=0.062  Score=45.12  Aligned_cols=55  Identities=24%  Similarity=0.378  Sum_probs=44.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeecc
Q 024842          156 FSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQ  216 (262)
Q Consensus       156 ~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~  216 (262)
                      ...+++..++++.+..++-+.. .-+.-|||+.-+||+|+ +|    .+.|+||.+++.-.
T Consensus       318 ~~~~e~lsff~s~~sil~~lek-kf~fehrnlt~~niLId-~G----nvtLIDfklsRl~~  372 (488)
T COG5072         318 DRSEEELSFFWSCISILDILEK-KFPFEHRNLTLDNILID-EG----NVTLIDFKLSRLSY  372 (488)
T ss_pred             ccHHHHHHHHHHHHHHHhhhhh-cCCcccccccccceeee-cC----ceEEEEeeeeeccc
Confidence            5668888899988887776665 45689999999999998 55    49999999998543

>cd05156 ChoK_euk Choline Kinase (ChoK) in eukaryotes

Probab=95.72  E-value=0.027  Score=46.42  Aligned_cols=36  Identities=31%  Similarity=0.486  Sum_probs=26.7

Q ss_pred             CeeecCCCCCcEEEecCCCCCCceEEeeccceeecc
Q 024842          181 PYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQ  216 (262)
Q Consensus       181 ~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~  216 (262)
                      .++|+|+.|.||+++.+......+.++||+.|..-.
T Consensus       180 ~lcH~Dl~~~Nil~~~~~~~~~~i~lIDwEya~~~~  215 (302)
T cd05156         180 VFCHNDLQEGNILLLNPSSETKKLVLIDFEYASYNY  215 (302)
T ss_pred             eEEecCCCcCeEEecCCCCCCCcEEEEeeCCCCCCC
Confidence            589999999999998640001158999999887443

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC) and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. ChoK plays an important role in cell signaling pathways and the regulation of cell growth. Along with PCho, it is involved in malignant transformation through Ras oncogenes in various human cancer

>PRK10271 thiK thiamine kinase; Provisional

Probab=95.56  E-value=0.011  Score=44.84  Aligned_cols=31  Identities=26%  Similarity=0.355  Sum_probs=25.9

Q ss_pred             CeeecCCCCCcEEEecCCCCCCceEEeeccceeecc
Q 024842          181 PYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQ  216 (262)
Q Consensus       181 ~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~  216 (262)
                      ..+|+|+.|.|++++.++     ++|+||+.|..-+
T Consensus        78 ~p~H~D~~~~N~~~~~~~-----~~lIDwe~a~~gD  108 (188)
T PRK10271         78 APLHMDVHAGNLVHSASG-----LRLIDWEYAGDGD  108 (188)
T ss_pred             eeecCCCCCccEEEECCC-----EEEEeCCcccCCC
Confidence            369999999999997665     8899999986443

>PTZ00384 choline kinase; Provisional

Probab=95.45  E-value=0.07  Score=45.60  Aligned_cols=29  Identities=31%  Similarity=0.293  Sum_probs=24.2

Q ss_pred             CeeecCCCCCcEEEecCCCCCCceEEeeccceee
Q 024842          181 PYAHNDVKPGNILITCRKGQPPLAILMDFGSARP  214 (262)
Q Consensus       181 ~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~  214 (262)
                      ..+|+|+.+.||+.+.++     +.++||.-|..
T Consensus       228 VfCHNDL~~gNIL~~~~~-----l~lID~EYA~~  256 (383)
T PTZ00384        228 LFCHNDLFFTNILDFNQG-----IYFIDFDFAGF  256 (383)
T ss_pred             eeeeccCCcccEEecCCC-----EEEEEeccccC
Confidence            379999999999986544     99999998863

>TIGR02906 spore_CotS spore coat protein, CotS family

Probab=95.38  E-value=0.045  Score=45.25  Aligned_cols=28  Identities=25%  Similarity=0.386  Sum_probs=23.8

Q ss_pred             CeeecCCCCCcEEEecCCCCCCceEEeecccee
Q 024842          181 PYAHNDVKPGNILITCRKGQPPLAILMDFGSAR  213 (262)
Q Consensus       181 ~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~  213 (262)
                      .++|||+++.||+++.+     .+.|+||+.+.
T Consensus       188 ~liHgD~~~~Nil~~~~-----~i~lIDfd~~~  215 (313)
T TIGR02906       188 GFCHQDYAYHNILLKDN-----EVYVIDFDYCT  215 (313)
T ss_pred             ceEcCCCCcccEEEeCC-----cEEEEECcccc
Confidence            48999999999999763     37899999765

Members of this family include the spore coat proteins CotS and YtaA from Bacillus subtilis and, from other endospore-forming bacteria, homologs that are more closely related to these two than to the spore coat proteins YutH and YsxE. The CotS family is more broadly distributed than YutH or YsxE, but still is not universal among spore-formers.

>COG3001 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.22  E-value=0.38  Score=37.96  Aligned_cols=57  Identities=19%  Similarity=0.230  Sum_probs=36.4

Q ss_pred             cceeehhhhccchHHHHHHHHHHHHhhhCC---CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchh
Q 024842           74 GTYAMKKVLIQNNEQLEMVREEIRVSSLFS---HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLL  143 (262)
Q Consensus        74 ~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~---h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~  143 (262)
                      .++.+|...   ......|..|+.-|+.+.   --.+.+.+.+-          ...+..|+||+|++.+.+.
T Consensus        40 ~~~FvK~n~---~~~~~~f~AEa~gL~~la~s~ti~VP~vi~~G----------~~~~~sylVle~L~~~~~d   99 (286)
T COG3001          40 DPFFVKCNQ---REQLSMFTAEADGLELLARSNTITVPKVIAVG----------ASRDHSYLVLEYLPTGPLD   99 (286)
T ss_pred             cceEEEecc---hhhHHHHHHHHHHHHHHHhcCCccccceEEec----------CCCCeeEEEEeeccCCCCC
Confidence            367777543   333455666766666554   34555555543          5688899999999876554

>PHA03111 Ser/Thr kinase; Provisional

Probab=95.09  E-value=0.042  Score=45.45  Aligned_cols=56  Identities=32%  Similarity=0.380  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHcCC--CCeeecCCCCCcEEEecCCC--------------CCCceEEeecccee
Q 024842          158 TSDVLQIFYQICAGLKHMHSLE--PPYAHNDVKPGNILITCRKG--------------QPPLAILMDFGSAR  213 (262)
Q Consensus       158 ~~~~~~i~~ql~~~l~~lH~~~--~~ivH~dikp~Nill~~~~~--------------~~~~~kl~Dfg~a~  213 (262)
                      .+-++.++.|++.-.-.+-+.-  ...+|.||||+|||+-+.+.              ++..++|.||.+++
T Consensus       278 ~~YikfifLQiaLLyikIYelp~c~nF~H~DLKPdNILiFds~~~i~I~~~~~~~vF~Epi~~~LnDFDfSq  349 (444)
T PHA03111        278 VEYIKFIFLQIALLYIKIYELPCCDNFLHVDLKPDNILIFDSDEPISITLKDATYVFNEPIKACLNDFDFSQ  349 (444)
T ss_pred             HHHHHHHHHHHHHHHHhhhcCCCcceeeeccCCCCcEEEecCCCcEEEEECCeEEEeccchhhhhcccCHHH
Confidence            3456677778776553442211  13899999999999965431              12245677777765

>COG0510 ycfN Thiamine kinase and related kinases [Coenzyme transport and metabolism]

Probab=94.98  E-value=0.069  Score=43.30  Aligned_cols=54  Identities=22%  Similarity=0.297  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHHHHHHHHHcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeecc
Q 024842          159 SDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQ  216 (262)
Q Consensus       159 ~~~~~i~~ql~~~l~~lH~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~  216 (262)
                      ..+...+..+-.++.-.+.....+||+|+.|+|++.+..+    .++|+||.-|..-+
T Consensus       132 ~~~~~~~~~l~~~l~~~~~~~~v~cH~Dl~~~N~l~t~~~----~l~LIDWEyAg~~D  185 (269)
T COG0510         132 HLLRKKLKELRRALEEVPKDDLVPCHNDLNPGNLLLTDKG----GLFLIDWEYAGLND  185 (269)
T ss_pred             HHHHHHHHHHHHHhhhcCCCceeeecCCCCccceEEcCCC----cEEEEecccCCCcc
Confidence            3444455566666666665312489999999999998745    59999998886433

>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]

Probab=94.61  E-value=0.017  Score=51.09  Aligned_cols=36  Identities=17%  Similarity=0.256  Sum_probs=28.7

Q ss_pred             CcccCCcccchhhhhhhhhhhhhcCcccchheeheecccCC
Q 024842          222 GQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMFGR  262 (262)
Q Consensus       222 ~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~G~  262 (262)
                      .+..|.+||-+.++.+..     .-|+||+|+++.||.+|.
T Consensus       350 QSRfYRAPEVILGlpY~~-----~IDmWSLGCIlAEL~tG~  385 (586)
T KOG0667|consen  350 QSRFYRAPEVILGLPYDT-----AIDMWSLGCILAELFTGE  385 (586)
T ss_pred             eccccccchhhccCCCCC-----ccceeehhhhHHhHhcCc
Confidence            455778888887776553     359999999999999983

>PF01633 Choline_kinase: Choline/ethanolamine kinase; InterPro: IPR002573 Choline kinase, (ATP:choline phosphotransferase, 2

Probab=94.54  E-value=0.027  Score=43.87  Aligned_cols=30  Identities=43%  Similarity=0.625  Sum_probs=19.3

Q ss_pred             CeeecCCCCCcEEE-ecCCCCCCceEEeeccceee
Q 024842          181 PYAHNDVKPGNILI-TCRKGQPPLAILMDFGSARP  214 (262)
Q Consensus       181 ~ivH~dikp~Nill-~~~~~~~~~~kl~Dfg~a~~  214 (262)
                      ..+|+|+.|.||++ ..++    .++|+||..|..
T Consensus       144 v~cHnDl~~~Nil~~~~~~----~~~lIDfEya~~  174 (211)
T PF01633_consen  144 VFCHNDLNPGNILINNKDG----EVKLIDFEYAGY  174 (211)
T ss_dssp             EEE-S--SGGGEEETSSSS----CEEE--GTT-EE
T ss_pred             eEeeccCccccEEeccCCC----eEEEecHHHHhh
Confidence            48999999999999 4444    599999998864

7.1.32 from EC) belongs to the choline/ethanolamine kinase family. Ethanolamine and choline are major membrane phospholipids, in the form of glycerophosphoethanolamine and glycerophosphocholine. Ethanolamine is also a component of the glycosylphosphatidylinositol (GPI) anchor, which is necessary for cell-surface protein attachment []. The de novo synthesis of these phospholipids begins with the creation of phosphoethanolamine and phosphocholine by ethanolamine and choline kinases in the first step of the CDP-ethanolamine pathway [, ]. There are two putative choline/ethanolamine kinases (C/EKs) in the Trypanosoma brucei genome. Ethanolamine kinase has no choline kinase activity [] and its activity is inhibited by ADP []. Inositol supplementation represses ethanolamine kinase, decreasing the incorporation of ethanolamine into the CDP-ethanolamine pathway and into phosphatidylethanolamine and phosphatidylcholine []. ; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 3C5I_A 2IG7_A 3LQ3_A 3FEG_A 2QG7_E 3FI8_A 1NW1_A 3MES_A 3G15_A 2CKP_B ....

>PF05445 Pox_ser-thr_kin: Poxvirus serine/threonine protein kinase; InterPro: IPR008790 This family of proteins contain poxvirus serine/threonine protein kinases, which are essential for phosphorylation of virion proteins during virion assembly

Probab=94.51  E-value=0.052  Score=45.10  Aligned_cols=57  Identities=33%  Similarity=0.347  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHcC--CCCeeecCCCCCcEEEecCCCC--------------CCceEEeeccceee
Q 024842          158 TSDVLQIFYQICAGLKHMHSL--EPPYAHNDVKPGNILITCRKGQ--------------PPLAILMDFGSARP  214 (262)
Q Consensus       158 ~~~~~~i~~ql~~~l~~lH~~--~~~ivH~dikp~Nill~~~~~~--------------~~~~kl~Dfg~a~~  214 (262)
                      .+-++.++.|++.-.--+-+.  -...+|.||||+|||+-+....              +-.++|.||.+++.
T Consensus       274 ~~YvkfifLQiaLLyikIYelp~c~nF~H~DLKPdNILiFds~~~i~I~~~~~~~vF~Epi~~~LnDFDfSqv  346 (434)
T PF05445_consen  274 VEYVKFIFLQIALLYIKIYELPCCTNFLHVDLKPDNILIFDSKEPIRIKFGNRNYVFKEPIRCCLNDFDFSQV  346 (434)
T ss_pred             HHHHHHHHHHHHHHHeeeecCCCcceeeecccCcCcEEEecCCCceEEEECCeEEEecccceeeecccCHHHh
Confidence            344566677765543222221  0138999999999999654321              22467888887763

; GO: 0004672 protein kinase activity, 0005524 ATP binding

>smart00587 CHK ZnF_C4 abd HLH domain containing kinases domain

Probab=94.28  E-value=0.049  Score=41.93  Aligned_cols=36  Identities=22%  Similarity=0.343  Sum_probs=27.6

Q ss_pred             CeeecCCCCCcEEEecCCC-CCCceEEeeccceeecc
Q 024842          181 PYAHNDVKPGNILITCRKG-QPPLAILMDFGSARPAQ  216 (262)
Q Consensus       181 ~ivH~dikp~Nill~~~~~-~~~~~kl~Dfg~a~~~~  216 (262)
                      .++|||+.+.|+++..+++ .+..+.|+||..+..-.
T Consensus       121 vl~HgD~~~~N~~~~~~~~~~~~~~~liDfq~~~~g~  157 (196)
T smart00587      121 VLNHGDLWANNIMFKYDDEGKPEDVALIDFQLSHYGS  157 (196)
T ss_pred             EEeeCCCCccceeeccCCCCCccceEEEecccCCcCC
Confidence            4899999999999975532 23358899999986443

subfamily of choline kinases

>PLN02236 choline kinase

Probab=93.90  E-value=0.11  Score=43.72  Aligned_cols=33  Identities=27%  Similarity=0.453  Sum_probs=26.5

Q ss_pred             CeeecCCCCCcEEEecCCCCCCceEEeeccceeecc
Q 024842          181 PYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQ  216 (262)
Q Consensus       181 ~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~  216 (262)
                      .++|+|+++.||+++.++.   .+.++||..|....
T Consensus       201 ~~cH~Dl~~~Nil~~~~~~---~~~lID~Eya~~~~  233 (344)
T PLN02236        201 GFCHNDLQYGNIMIDEETR---AITIIDYEYASYNP  233 (344)
T ss_pred             eEEeCCCCcCcEEEeCCCC---cEEEEeehhccccc
Confidence            4899999999999975321   59999999887543

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=93.77  E-value=0.082  Score=50.54  Aligned_cols=151  Identities=15%  Similarity=0.147  Sum_probs=89.2

Q ss_pred             HHHHHHHHHHHHhhhCCCCCccchhhhhHHHhhhccCCCCcc-eeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHH
Q 024842           87 EQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKH-EAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIF  165 (262)
Q Consensus        87 ~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~  165 (262)
                      ...+..+.|...+....|+|+..++.+-+..       ...+ ...+..+++...++...+.    .-..++.++.+.+.
T Consensus       224 ~~i~~~E~e~~~l~k~~~~n~~~~~~~~le~-------~~~g~~~~v~~~~~s~~~~~~~~q----~v~~i~~~~~r~~~  292 (1351)
T KOG1035|consen  224 KEIQTTEIELESLSKIAHDNLGGYFVYGLER-------LFRGIVLDVLQEICSKVELRSLLQ----SVGSIPLETLRILH  292 (1351)
T ss_pred             HHHHHHHHHHHHHHhhccccccceeEEeehh-------hcchHHHHHHHhhcCccchHHHHh----hccccCHHHHHHHH
Confidence            3445566788889999999999998776421       1112 1223445666777776665    45568999999999


Q ss_pred             HHHHHHHHHHHcCCCCeeecCCCCC---cEEEecCCCCCCceEEe--eccceeeccccCc---------------cCccc
Q 024842          166 YQICAGLKHMHSLEPPYAHNDVKPG---NILITCRKGQPPLAILM--DFGSARPAQSKFA---------------LGQRR  225 (262)
Q Consensus       166 ~ql~~~l~~lH~~~~~ivH~dikp~---Nill~~~~~~~~~~kl~--Dfg~a~~~~~~~~---------------~~~~~  225 (262)
                      .++..||.++|+..  ..|.-+...   +--.+.++    .+..+  ||+..........               ...+.
T Consensus       293 ~~~~~GL~~~h~~~--l~~v~L~~s~~~~~~~~~e~----~~~~sl~~~~ss~~l~d~~~~~~~~~~~~~~~~e~~~~~~  366 (1351)
T KOG1035|consen  293 QKLLEGLAYLHSLS--LEHVVLSASSSKESTVDGEG----VVAISLSDFDSSKPLPDNEKSFSDLLAEIRNADEDLKENT  366 (1351)
T ss_pred             HHHhhhHHHHHHhc--cceeEEecccccccccCccc----eeecchhhhcccccCCCcccchhhcCcccccccccccccc
Confidence            99999999999875  544444333   11111111    34444  7776665443221               11111


Q ss_pred             C--CcccchhhhhhhhhhhhhcCcccchhee
Q 024842          226 Y--SCRNGLLSIVLHLSELLSCGTVRVIQIL  254 (262)
Q Consensus       226 ~--~~~~d~~s~g~~~~e~~~~~~v~~~g~~  254 (262)
                      +  ....|+|.+|....-+...+++...+..
T Consensus       367 ~~~~r~~dL~~lgll~~~~~~~~~i~~~~~~  397 (1351)
T KOG1035|consen  367 AKKSRLTDLWCLGLLLLQLSQGEDISEKSAV  397 (1351)
T ss_pred             chhhhhhHHHHHHHHHhhhhhcCcccccccc
Confidence            1  2224777777665555555555444433

>COG2334 Putative homoserine kinase type II (protein kinase fold) [General function prediction only]

Probab=93.50  E-value=0.064  Score=44.76  Aligned_cols=29  Identities=28%  Similarity=0.517  Sum_probs=24.8

Q ss_pred             eeecCCCCCcEEEecCCCCCCceEEeecccee
Q 024842          182 YAHNDVKPGNILITCRKGQPPLAILMDFGSAR  213 (262)
Q Consensus       182 ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~  213 (262)
                      +||+|+.|+||+++.+..   ..-++||+.|.
T Consensus       199 iIH~D~~~~NVl~d~~~~---~~g~iDFdDa~  227 (331)
T COG2334         199 IIHGDLHPDNVLFDDDTD---VSGFIDFDDAG  227 (331)
T ss_pred             eeecCCCccceeEcCCCC---eeeEEEccccc
Confidence            899999999999986652   37799999876

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	262
2buj_A	317	Crystal Structure Of The Human Serine-Threonine Kin		2e-19
3ll6_A	337	Crystal Structure Of The Human Cyclin G Associated		4e-14
4eqm_A	294	Structural Analysis Of Staphylococcus Aureus Serine		1e-08
3uto_A	573	Twitchin Kinase Region From C.Elegans (Fn31-Nl-Kin-		6e-08
1koa_A	491	Twitchin Kinase Fragment (C.Elegans), Autoregulated		8e-08
3hx4_A	508	Crystal Structure Of Cdpk1 Of Toxoplasma Gondii, Tg		1e-06
3ku2_A	507	Crystal Structure Of Inactivated Form Of Cdpk1 From		1e-06
3i79_A	484	Calcium-Dependent Protein Kinase 1 From Toxoplasma		2e-06
3ma6_A	298	Crystal Structure Of Kinase Domain Of Tgcdpk1 In Pr		3e-06
2v7o_A	336	Crystal Structure Of Human Calcium-Calmodulin-Depen		6e-06
4bcf_A	331	Structure Of Cdk9 In Complex With Cyclin T And A 2-		1e-05
3blh_A	331	Crystal Structure Of Human Cdk9CYCLINT1 Length = 33		2e-05
3i7c_A	484	Calcium-Dependent Protein Kinase 1 From Toxoplasma		2e-05
3mi9_A	351	Crystal Structure Of Hiv-1 Tat Complexed With Human		2e-05
4ec8_A	373	Structure Of Full Length Cdk9 In Complex With Cycli		2e-05
1kob_A	387	Twitchin Kinase Fragment (Aplysia), Autoregulated P		2e-05
3mdy_A	337	Crystal Structure Of The Cytoplasmic Domain Of The		3e-05
3nup_A	307	Cdk6 (Monomeric) In Complex With Inhibitor Length =		3e-05
1jow_B	308	Crystal Structure Of A Complex Of Human Cdk6 And A		4e-05
1bi8_A	326	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		4e-05
3q5i_A	504	Crystal Structure Of Pbanka_031420 Length = 504		4e-05
1tki_A	321	Autoinhibited Serine Kinase Domain Of The Giant Mus		5e-05
3hzt_A	467	Crystal Structure Of Toxoplasma Gondii Cdpk3, Tgme4		5e-05
2wei_A	287	Crystal Structure Of The Kinase Domain Of Cryptospo		6e-05
4apc_A	350	Crystal Structure Of Human Nima-Related Kinase 1 (N		7e-05
3igo_A	486	Crystal Structure Of Cryptosporidium Parvum Cdpk1,		7e-05
3dfa_A	286	Crystal Structure Of Kinase Domain Of Calcium-depen		7e-05
3dxn_A	287	Crystal Structure Of The Calcium-dependent Kinase F		1e-04
3fi2_A	353	Crystal Structure Of Jnk3 With Amino-Pyrazole Inhib		1e-04
3ttj_A	464	Crystal Structure Of Jnk3 Complexed With Cc-359, A		1e-04
2wnt_A	330	Crystal Structure Of The Human Ribosomal Protein S6		1e-04
3rny_A	346	Crystal Structure Of Human Rsk1 C-Terminal Kinase D		2e-04
2z7q_A	321	Crystal Structure Of The N-Terminal Kinase Domain O		2e-04
1jnk_A	423	The C-Jun N-Terminal Kinase (Jnk3s) Complexed With		2e-04
2vz6_A	313	Structure Of Human Calcium Calmodulin Dependent Pro		2e-04
3fv8_A	355	Jnk3 Bound To Piperazine Amide Inhibitor, Sr2774 Le		2e-04
3ptg_A	363	Design And Synthesis Of A Novel, Orally Efficacious		2e-04
2ok1_A	365	Crystal Structure Of Jnk3 Bound To N-Benzyl-4-(4-(3		2e-04
1pmn_A	364	Crystal Structure Of Jnk3 In Complex With An Imidaz		2e-04
2o0u_A	364	Crystal Structure Of Human Jnk3 Complexed With N-{3		2e-04
3oxi_A	362	Design And Synthesis Of Disubstituted Thiophene And		2e-04
3bhh_A	295	Crystal Structure Of Human Calcium/calmodulin-depen		2e-04
3kvx_A	364	Jnk3 Bound To Aminopyrimidine Inhibitor, Sr-3562 Le		2e-04
3fi3_A	364	Crystal Structure Of Jnk3 With Indazole Inhibitor,		3e-04
4el9_A	305	Structure Of N-Terminal Kinase Domain Of Rsk2 With		3e-04
2wel_A	327	Crystal Structure Of Su6656-Bound CalciumCALMODULIN		3e-04
2vn9_A	301	Crystal Structure Of Human Calcium Calmodulin Depen		3e-04
3ubd_A	304	Structure Of N-Terminal Domain Of Rsk2 Kinase In Co		3e-04
3vum_A	370	Crystal Structure Of A Cysteine-deficient Mutant M7		3e-04
2exc_X	356	Inhibitor Complex Of Jnk3 Length = 356		3e-04
2b1p_A	355	Inhibitor Complex Of Jnk3 Length = 355		3e-04
4h36_A	356	Crystal Structure Of Jnk3 In Complex With Atf2 Pept		3e-04
2x4f_A	373	The Crystal Structure Of The Human Myosin Light Cha		3e-04
2r9s_A	356	C-Jun N-Terminal Kinase 3 With 3,5-Disubstituted Qu		4e-04
3vuk_A	370	Crystal Structure Of A Cysteine-deficient Mutant M5		4e-04
3vul_A	370	Crystal Structure Of A Cysteine-deficient Mutant M1		4e-04
3is5_A	285	Crystal Structure Of Cdpk Kinase Domain From Toxopl		4e-04
3g51_A	325	Structural Diversity Of The Active Conformation Of		4e-04
3vui_A	370	Crystal Structure Of A Cysteine-deficient Mutant M2		4e-04
1u5q_A	348	Crystal Structure Of The Tao2 Kinase Domain: Activa		5e-04
2wqm_A	310	Structure Of Apo Human Nek7 Length = 310		5e-04
2j90_A	304	Crystal Structure Of Human Zip Kinase In Complex Wi		5e-04
2gcd_A	309	Tao2 Kinase Domain-Staurosporine Structure Length =		6e-04
3lij_A	494	Crystal Structure Of Full Length Cpcdpk3 (Cgd5_820)		6e-04
2y0a_A	326	Structure Of Dapk1 Construct Residues 1-304 Length		6e-04
2xuu_A	334	Crystal Structure Of A Dap-Kinase 1 Mutant Length =		7e-04
2x0g_A	334	X-ray Structure Of A Dap-kinase Calmodulin Complex		7e-04
2xzs_A	312	Death Associated Protein Kinase 1 Residues 1-312 Le		7e-04
4aaa_A	331	Crystal Structure Of The Human Cdkl2 Kinase Domain		8e-04
3vuh_A	370	Crystal Structure Of A Cysteine-deficient Mutant M3		8e-04
3bhy_A	283	Crystal Structure Of Human Death Associated Protein		8e-04
2yak_A	285	Structure Of Death-Associated Protein Kinase 1 (Dap		9e-04
2w4k_A	302	X-Ray Structure Of A Dap-Kinase 2-302 Length = 302		9e-04
1wvw_A	278	Crystal Structures Of Kinase Domain Of Dap Kinase I		9e-04
1p4f_A	293	Death Associated Protein Kinase Catalytic Domain Wi		9e-04
3gu4_A	295	Crystal Structure Of Dapkq23v-Amppnp Length = 295		9e-04
2w4j_A	277	X-Ray Structure Of A Dap-Kinase 2-277 Length = 277		9e-04

>pdb|2BUJ|A Chain A, Crystal Structure Of The Human Serine-Threonine Kinase 16 In Complex With Staurosporine Length = 317

Iteration: 1
 Score = 92.8 bits (229), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 65/198 (32%), Positives = 98/198 (49%), Gaps = 34/198 (17%)
Query: 18  GGDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYA 77
           G  V I+   Y  +++LGEGGF+YV LV+                       L D   YA
Sbjct: 21  GHMVIIDNKHYLFIQKLGEGGFSYVDLVEG----------------------LHDGHFYA 58
Query: 78  MKKVLIQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVH 137
           +K++L    +  E  + E  +  LF+H N+L L+ + +      +E   KHEA+LL P  
Sbjct: 59  LKRILCHEQQDREEAQREADMHRLFNHPNILRLVAYCL------RERGAKHEAWLLLPFF 112
Query: 138 LDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCR 197
             GTL +  + ++ K  F +   +L +   IC GL+ +H+    YAH D+KP NIL+   
Sbjct: 113 KRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAIHA--KGYAHRDLKPTNILLG-D 169
Query: 198 KGQPPLAILMDFGSARPA 215
           +GQP   +LMD GS   A
Sbjct: 170 EGQP---VLMDLGSMNQA 184

>pdb|3LL6|A Chain A, Crystal Structure Of The Human Cyclin G Associated Kinase (gak) Length = 337

Iteration: 1
 Score = 75.1 bits (183), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 60/210 (28%), Positives = 95/210 (45%), Gaps = 31/210 (14%)
Query: 4   SLSGLNALYDSVNGGGDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANK 63
           SL G +    S   G  V + E R R+ R L EGGFA+VY  ++                
Sbjct: 6   SLGGASGRDQSDFVGQTVELGELRLRVRRVLAEGGFAFVYEAQD---------------- 49
Query: 64  VKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEI-RVSSLFSHRNLLPLLDHAIIAVKANQ 122
                 +     YA+K++L    E+   + +E+  +  L  H N++     A I  + + 
Sbjct: 50  ------VGSGREYALKRLLSNEEEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKEESD 103
Query: 123 EGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPY 182
            G  +   +LL      G L++  K M+++    S   VL+IFYQ C  ++HMH  +PP 
Sbjct: 104 TGQAE---FLLLTELCKGQLVEFLKKMESRGPL-SCDTVLKIFYQTCRAVQHMHRQKPPI 159
Query: 183 AHNDVKPGNILITCRKGQPPLAILMDFGSA 212
            H D+K  N+L++ +        L DFGSA
Sbjct: 160 IHRDLKVENLLLSNQG----TIKLCDFGSA 185

>pdb|4EQM|A Chain A, Structural Analysis Of Staphylococcus Aureus SerineTHREONINE KINASE Pknb Length = 294

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 63/249 (25%), Positives = 104/249 (41%), Gaps = 57/249 (22%)
Query: 23  INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVL 82
           INE RY+I+ +LG GG + VYL ++T+          L  KV            A+K + 
Sbjct: 9   INE-RYKIVDKLGGGGMSTVYLAEDTI----------LNIKV------------AIKAIF 45
Query: 83  I---QNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLD 139
           I   +  E L+    E+  SS  SH+N++ ++D        ++E     + Y L   +++
Sbjct: 46  IPPREKEETLKRFEREVHNSSQLSHQNIVSMID-------VDEED----DCYYLVMEYIE 94
Query: 140 GTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKG 199
           G  L  ++ +++     S    +    QI  G+KH H +     H D+KP NILI   K 
Sbjct: 95  GPTL--SEYIESHGP-LSVDTAINFTNQILDGIKHAHDMR--IVHRDIKPQNILIDSNKT 149
Query: 200 QPPLAILMDFGSARP------AQSKFALGQRRYSCRNGXXXXXXXXXXXXXCGTVRVIQI 253
                 + DFG A+        Q+   LG  +Y                  C  +  I I
Sbjct: 150 LK----IFDFGIAKALSETSLTQTNHVLGTVQY-----FSPEQAKGEATDECTDIYSIGI 200
Query: 254 LMRELMFGR 262
           ++ E++ G 
Sbjct: 201 VLYEMLVGE 209

>pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans (Fn31-Nl-Kin-Crd-Ig26) Length = 573

Iteration: 1
 Score = 54.3 bits (129), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 76/185 (41%), Gaps = 39/185 (21%)
Query: 26  NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN 85
           + Y I  +LG G F  V+ V E  T +                       +A K V+  +
Sbjct: 157 DHYDIHEELGTGAFGVVHRVTERATGN----------------------NFAAKFVMTPH 194
Query: 86  NEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDH 145
               E VR+EI+  S+  H  L+ L D    A + +      +E  +++     G L + 
Sbjct: 195 ESDKETVRKEIQTMSVLRHPTLVNLHD----AFEDD------NEMVMIYEFMSGGELFEK 244
Query: 146 AKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAI 205
                 K    S  + ++   Q+C GL HMH  E  Y H D+KP NI+ T ++       
Sbjct: 245 VADEHNK---MSEDEAVEYMRQVCKGLCHMH--ENNYVHLDLKPENIMFTTKRSNE--LK 297
Query: 206 LMDFG 210
           L+DFG
Sbjct: 298 LIDFG 302

>pdb|1KOA|A Chain A, Twitchin Kinase Fragment (C.Elegans), Autoregulated Protein Kinase And Immunoglobulin Domains Length = 491

Iteration: 1
 Score = 53.9 bits (128), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 76/185 (41%), Gaps = 39/185 (21%)
Query: 26  NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN 85
           + Y I  +LG G F  V+ V E  T +                       +A K V+  +
Sbjct: 51  DHYDIHEELGTGAFGVVHRVTERATGN----------------------NFAAKFVMTPH 88
Query: 86  NEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDH 145
               E VR+EI+  S+  H  L+ L D    A + +      +E  +++     G L + 
Sbjct: 89  ESDKETVRKEIQTMSVLRHPTLVNLHD----AFEDD------NEMVMIYEFMSGGELFEK 138
Query: 146 AKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAI 205
                 K    S  + ++   Q+C GL HMH  E  Y H D+KP NI+ T ++       
Sbjct: 139 VADEHNK---MSEDEAVEYMRQVCKGLCHMH--ENNYVHLDLKPENIMFTTKRSNE--LK 191
Query: 206 LMDFG 210
           L+DFG
Sbjct: 192 LIDFG 196

>pdb|3HX4|A Chain A, Crystal Structure Of Cdpk1 Of Toxoplasma Gondii, Tgme49_101440, In Presence Of Calcium Length = 508

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 81/188 (43%), Gaps = 36/188 (19%)
Query: 23  INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVL 82
           I  +RY+  R LG+G F  V L K+ +T    A                        KV+
Sbjct: 47  IFSDRYKGQRVLGKGSFGEVILCKDKITGQECAV-----------------------KVI 83
Query: 83  IQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTL 142
            +       V+++    SL     LL  LDH  I +K  +    K   YL+  V+  G L
Sbjct: 84  SKRQ-----VKQKTDKESLLREVQLLKQLDHPNI-MKLYEFFEDKGYFYLVGEVYTGGEL 137
Query: 143 LDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPP 202
            D  +++  K+  FS  D  +I  Q+ +G+ +MH  +    H D+KP N+L+  +     
Sbjct: 138 FD--EIISRKR--FSEVDAARIIRQVLSGITYMH--KNKIVHRDLKPENLLLESKSKDAN 191
Query: 203 LAILMDFG 210
           + I+ DFG
Sbjct: 192 IRII-DFG 198

>pdb|3KU2|A Chain A, Crystal Structure Of Inactivated Form Of Cdpk1 From Toxoplasma Gondii, Tgme49.101440 Length = 507

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 81/188 (43%), Gaps = 36/188 (19%)
Query: 23  INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVL 82
           I  +RY+  R LG+G F  V L K+ +T    A                        KV+
Sbjct: 46  IFSDRYKGQRVLGKGSFGEVILCKDKITGQECAV-----------------------KVI 82
Query: 83  IQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTL 142
            +       V+++    SL     LL  LDH  I +K  +    K   YL+  V+  G L
Sbjct: 83  SKRQ-----VKQKTDKESLLREVQLLKQLDHPNI-MKLYEFFEDKGYFYLVGEVYTGGEL 136
Query: 143 LDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPP 202
            D  +++  K+  FS  D  +I  Q+ +G+ +MH  +    H D+KP N+L+  +     
Sbjct: 137 FD--EIISRKR--FSEVDAARIIRQVLSGITYMH--KNKIVHRDLKPENLLLESKSKDAN 190
Query: 203 LAILMDFG 210
           + I+ DFG
Sbjct: 191 IRII-DFG 197

>pdb|3I79|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii (Tgcdpk1) Length = 484

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 81/188 (43%), Gaps = 36/188 (19%)
Query: 23  INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVL 82
           I  +RY+  R LG+G F  V L K+ +T    A                        KV+
Sbjct: 23  IFSDRYKGQRVLGKGSFGEVILCKDKITGQECAV-----------------------KVI 59
Query: 83  IQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTL 142
            +       V+++    SL     LL  LDH  I +K  +    K   YL+  V+  G L
Sbjct: 60  SKRQ-----VKQKTDKESLLREVQLLKQLDHPNI-MKLYEFFEDKGYFYLVGEVYTGGEL 113
Query: 143 LDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPP 202
            D  +++  K+  FS  D  +I  Q+ +G+ +MH  +    H D+KP N+L+  +     
Sbjct: 114 FD--EIISRKR--FSEVDAARIIRQVLSGITYMH--KNKIVHRDLKPENLLLESKSKDAN 167
Query: 203 LAILMDFG 210
           + I+ DFG
Sbjct: 168 IRII-DFG 174

>pdb|3MA6|A Chain A, Crystal Structure Of Kinase Domain Of Tgcdpk1 In Presence Of 3brb-Pp1 Length = 298

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 81/188 (43%), Gaps = 36/188 (19%)
Query: 23  INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVL 82
           I  +RY+  R LG+G F  V L K+ +T    A                        KV+
Sbjct: 29  IFSDRYKGQRVLGKGSFGEVILCKDKITGQECAV-----------------------KVI 65
Query: 83  IQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTL 142
            +       V+++    SL     LL  LDH  I +K  +    K   YL+  V+  G L
Sbjct: 66  SKRQ-----VKQKTDKESLLREVQLLKQLDHPNI-MKLYEFFEDKGYFYLVGEVYTGGEL 119
Query: 143 LDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPP 202
            D  +++  K+  FS  D  +I  Q+ +G+ +MH  +    H D+KP N+L+  +     
Sbjct: 120 FD--EIISRKR--FSEVDAARIIRQVLSGITYMH--KNKIVHRDLKPENLLLESKSKDAN 173
Query: 203 LAILMDFG 210
           + I+ DFG
Sbjct: 174 IRII-DFG 180

>pdb|2V7O|A Chain A, Crystal Structure Of Human Calcium-Calmodulin-Dependent Protein Kinase Ii Gamma Length = 336

Iteration: 1
 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 86/196 (43%), Gaps = 43/196 (21%)
Query: 26  NRYRILRQLGEGGFAYVY-LVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ 84
           + Y++  +LG+G F+ V   VK+T T + +A                       KK+  +
Sbjct: 31  DDYQLFEELGKGAFSVVRRCVKKTPTQEYAAK------------------IINTKKLSAR 72
Query: 85  NNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLD 144
           ++++LE    E R+  L  H N++ L D        ++EG      YL+F +   G L +
Sbjct: 73  DHQKLE---REARICRLLKHPNIVRLHD------SISEEGF----HYLVFDLVTGGELFE 119
Query: 145 HAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILIT--CRKGQPP 202
                   +E++S +D     +QI   + H+H  +    H D+KP N+L+   C+     
Sbjct: 120 DI----VAREYYSEADASHCIHQILESVNHIHQHD--IVHRDLKPENLLLASKCKGAAVK 173
Query: 203 LAILMDFGSARPAQSK 218
           LA   DFG A   Q +
Sbjct: 174 LA---DFGLAIEVQGE 186

>pdb|4BCF|A Chain A, Structure Of Cdk9 In Complex With Cyclin T And A 2-amino-4- Heteroaryl-pyrimidine Inhibitor Length = 331

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 86/191 (45%), Gaps = 38/191 (19%)
Query: 26  NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN 85
           ++Y  L ++G+G F  V+  +                      H       A+KKVL++N
Sbjct: 18  SKYEKLAKIGQGTFGEVFKAR----------------------HRKTGQKVALKKVLMEN 55
Query: 86  NEQ---LEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTL 142
            ++   +  +RE I++  L  H N++ L++  I   KA+     K   YL+F    D   
Sbjct: 56  EKEGFPITALRE-IKILQLLKHENVVNLIE--ICRTKASPYNRCKASIYLVF----DFCE 108
Query: 143 LDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPP 202
            D A ++      F+ S++ ++   +  GL ++H  +    H D+K  N+LIT R G   
Sbjct: 109 HDLAGLLSNVLVKFTLSEIKRVMQMLLNGLYYIHRNK--ILHRDMKAANVLIT-RDGVLK 165
Query: 203 LAILMDFGSAR 213
           LA   DFG AR
Sbjct: 166 LA---DFGLAR 173

>pdb|3BLH|A Chain A, Crystal Structure Of Human Cdk9CYCLINT1 Length = 331

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 86/191 (45%), Gaps = 38/191 (19%)
Query: 26  NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN 85
           ++Y  L ++G+G F  V+  +                      H       A+KKVL++N
Sbjct: 18  SKYEKLAKIGQGTFGEVFKAR----------------------HRKTGQKVALKKVLMEN 55
Query: 86  NEQ---LEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTL 142
            ++   +  +RE I++  L  H N++ L++  I   KA+     K   YL+F    D   
Sbjct: 56  EKEGFPITALRE-IKILQLLKHENVVNLIE--ICRTKASPYNRCKGSIYLVF----DFCE 108
Query: 143 LDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPP 202
            D A ++      F+ S++ ++   +  GL ++H  +    H D+K  N+LIT R G   
Sbjct: 109 HDLAGLLSNVLVKFTLSEIKRVMQMLLNGLYYIHRNK--ILHRDMKAANVLIT-RDGVLK 165
Query: 203 LAILMDFGSAR 213
           LA   DFG AR
Sbjct: 166 LA---DFGLAR 173

>pdb|3I7C|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii (Tgcdpk1) In Complex With Bumped Kinase Inhibitor Na-Pp2 Length = 484

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 79/188 (42%), Gaps = 36/188 (19%)
Query: 23  INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVL 82
           I  +RY+  R LG+G F  V L K+ +T                       G     KV+
Sbjct: 23  IFSDRYKGQRVLGKGSFGEVILCKDKIT-----------------------GQECAVKVI 59
Query: 83  IQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTL 142
            +       V+++    SL     LL  LDH  I  K  +    K   YL+  V+  G L
Sbjct: 60  SKR-----QVKQKTDKESLLREVQLLKQLDHPNIX-KLYEFFEDKGYFYLVGEVYTGGEL 113
Query: 143 LDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPP 202
            D  +++  K+  FS  D  +I  Q+ +G+ + H  +    H D+KP N+L+  +     
Sbjct: 114 FD--EIISRKR--FSEVDAARIIRQVLSGITYXH--KNKIVHRDLKPENLLLESKSKDAN 167
Query: 203 LAILMDFG 210
           + I+ DFG
Sbjct: 168 IRII-DFG 174

>pdb|3MI9|A Chain A, Crystal Structure Of Hiv-1 Tat Complexed With Human P-Tefb Length = 351

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 86/191 (45%), Gaps = 38/191 (19%)
Query: 26  NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN 85
           ++Y  L ++G+G F  V+  +                      H       A+KKVL++N
Sbjct: 17  SKYEKLAKIGQGTFGEVFKAR----------------------HRKTGQKVALKKVLMEN 54
Query: 86  NEQ---LEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTL 142
            ++   +  +RE I++  L  H N++ L++  I   KA+     K   YL+F    D   
Sbjct: 55  EKEGFPITALRE-IKILQLLKHENVVNLIE--ICRTKASPYNRCKGSIYLVF----DFCE 107
Query: 143 LDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPP 202
            D A ++      F+ S++ ++   +  GL ++H  +    H D+K  N+LIT R G   
Sbjct: 108 HDLAGLLSNVLVKFTLSEIKRVMQMLLNGLYYIHRNK--ILHRDMKAANVLIT-RDGVLK 164
Query: 203 LAILMDFGSAR 213
           LA   DFG AR
Sbjct: 165 LA---DFGLAR 172

>pdb|4EC8|A Chain A, Structure Of Full Length Cdk9 In Complex With Cyclint And Drb Length = 373

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 86/191 (45%), Gaps = 38/191 (19%)
Query: 26  NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN 85
           ++Y  L ++G+G F  V+  +                      H       A+KKVL++N
Sbjct: 18  SKYEKLAKIGQGTFGEVFKAR----------------------HRKTGQKVALKKVLMEN 55
Query: 86  NEQ---LEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTL 142
            ++   +  +RE I++  L  H N++ L++  I   KA+     K   YL+F    D   
Sbjct: 56  EKEGFPITALRE-IKILQLLKHENVVNLIE--ICRTKASPYNRCKGSIYLVF----DFCE 108
Query: 143 LDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPP 202
            D A ++      F+ S++ ++   +  GL ++H  +    H D+K  N+LIT R G   
Sbjct: 109 HDLAGLLSNVLVKFTLSEIKRVMQMLLNGLYYIHRNK--ILHRDMKAANVLIT-RDGVLK 165
Query: 203 LAILMDFGSAR 213
           LA   DFG AR
Sbjct: 166 LA---DFGLAR 173

>pdb|1KOB|A Chain A, Twitchin Kinase Fragment (Aplysia), Autoregulated Protein Kinase Domain Length = 387

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 73/185 (39%), Gaps = 39/185 (21%)
Query: 28  YRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNE 87
           Y IL +LG G F  V+   E  T         +A  +  P        Y + K  ++N  
Sbjct: 53  YDILEELGSGAFGVVHRCVEKAT-----GRVFVAKFINTP--------YPLDKYTVKN-- 97
Query: 88  QLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAK 147
                  EI + +   H  L+ L D       A ++   K+E  L+      G L D   
Sbjct: 98  -------EISIMNQLHHPKLINLHD-------AFED---KYEMVLILEFLSGGELFDRIA 140
Query: 148 VMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILM 207
               K    S ++V+    Q C GLKHMH  E    H D+KP NI+   +K       ++
Sbjct: 141 AEDYK---MSEAEVINYMRQACEGLKHMH--EHSIVHLDIKPENIMCETKKASS--VKII 193
Query: 208 DFGSA 212
           DFG A
Sbjct: 194 DFGLA 198

>pdb|3MDY|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of The Bone Morp Protein Receptor Type-1b (Bmpr1b) In Complex With Fkbp12 An 193189 Length = 337

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 59/131 (45%), Gaps = 21/131 (16%)
Query: 74  GTYAMKKVLIQ---NNEQLEMVRE-EIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHE 129
           G +  +KV ++     E+    RE EI  + L  H N+L       IA      GSW  +
Sbjct: 56  GKWRGEKVAVKVFFTTEEASWFRETEIYQTVLMRHENIL-----GFIAADIKGTGSWT-Q 109
Query: 130 AYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSL------EPPYA 183
            YL+   H +G+L D+ K             +L++ Y   +GL H+H+       +P  A
Sbjct: 110 LYLITDYHENGSLYDYLKSTT-----LDAKSMLKLAYSSVSGLCHLHTEIFSTQGKPAIA 164
Query: 184 HNDVKPGNILI 194
           H D+K  NIL+
Sbjct: 165 HRDLKSKNILV 175

>pdb|3NUP|A Chain A, Cdk6 (Monomeric) In Complex With Inhibitor Length = 307

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 54/203 (26%), Positives = 91/203 (44%), Gaps = 42/203 (20%)
Query: 25  ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTY-AMKKVLI 83
           + +Y  + ++GEG +  V+                   K +D   L + G + A+K+V +
Sbjct: 10  DQQYECVAEIGEGAYGKVF-------------------KARD---LKNGGRFVALKRVRV 47
Query: 84  QNNEQ---LEMVREE--IRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHL 138
           Q  E+   L  +RE   +R    F H N++ L D   ++ + ++E     +  L+F  H+
Sbjct: 48  QTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVS-RTDRET----KLTLVFE-HV 101
Query: 139 DGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRK 198
           D  L  +    +  +    T  +  + +Q+  GL  +HS      H D+KP NIL+T   
Sbjct: 102 DQDLTTYLD--KVPEPGVPTETIKDMMFQLLRGLDFLHSHR--VVHRDLKPQNILVTS-S 156
Query: 199 GQPPLAILMDFGSARPAQSKFAL 221
           GQ  LA   DFG AR    + AL
Sbjct: 157 GQIKLA---DFGLARIYSFQMAL 176

>pdb|1JOW|B Chain B, Crystal Structure Of A Complex Of Human Cdk6 And A Viral Cyclin Length = 308

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 54/203 (26%), Positives = 91/203 (44%), Gaps = 42/203 (20%)
Query: 25  ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTY-AMKKVLI 83
           + +Y  + ++GEG +  V+                   K +D   L + G + A+K+V +
Sbjct: 10  DQQYECVAEIGEGAYGKVF-------------------KARD---LKNGGRFVALKRVRV 47
Query: 84  QNNEQ---LEMVREE--IRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHL 138
           Q  E+   L  +RE   +R    F H N++ L D   ++ + ++E     +  L+F  H+
Sbjct: 48  QTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVS-RTDRET----KLTLVFE-HV 101
Query: 139 DGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRK 198
           D  L  +    +  +    T  +  + +Q+  GL  +HS      H D+KP NIL+T   
Sbjct: 102 DQDLTTYLD--KVPEPGVPTETIKDMMFQLLRGLDFLHSHR--VVHRDLKPQNILVTS-S 156
Query: 199 GQPPLAILMDFGSARPAQSKFAL 221
           GQ  LA   DFG AR    + AL
Sbjct: 157 GQIKLA---DFGLARIYSFQMAL 176

>pdb|1BI8|A Chain A, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 326

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 54/203 (26%), Positives = 90/203 (44%), Gaps = 42/203 (20%)
Query: 25  ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTY-AMKKVLI 83
           + +Y  + ++GEG +  V+                   K +D   L + G + A+K+V +
Sbjct: 10  DQQYECVAEIGEGAYGKVF-------------------KARD---LKNGGRFVALKRVRV 47
Query: 84  QNNEQ---LEMVREE--IRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHL 138
           Q  E+   L  +RE   +R    F H N++ L D   ++ + ++E        L+F  H+
Sbjct: 48  QTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVS-RTDRETKLT----LVFE-HV 101
Query: 139 DGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRK 198
           D  L  +    +  +    T  +  + +Q+  GL  +HS      H D+KP NIL+T   
Sbjct: 102 DQDLTTYLD--KVPEPGVPTETIKDMMFQLLRGLDFLHSHR--VVHRDLKPQNILVTS-S 156
Query: 199 GQPPLAILMDFGSARPAQSKFAL 221
           GQ  LA   DFG AR    + AL
Sbjct: 157 GQIKLA---DFGLARIYSFQMAL 176

>pdb|3Q5I|A Chain A, Crystal Structure Of Pbanka_031420 Length = 504

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 54/197 (27%), Positives = 82/197 (41%), Gaps = 26/197 (13%)
Query: 28  YRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNE 87
           Y  +R+LG G +  V L KE       A       KV   S   D G Y+       +N+
Sbjct: 38  YFKVRKLGSGAYGEVLLCKEKNGHSEKAI------KVIKKSQF-DKGRYS------DDNK 84
Query: 88  QLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAK 147
            +E   EEI     ++  +LL  LDH  I +K       K   YL+   +  G L +   
Sbjct: 85  NIEKFHEEI-----YNEISLLKSLDHPNI-IKLFDVFEDKKYFYLVTEFYEGGELFEQ-- 136
Query: 148 VMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILM 207
           ++   K  F   D   I  QI +G+ ++H  +    H D+KP NIL+  +     + I+ 
Sbjct: 137 IINRHK--FDECDAANIMKQILSGICYLH--KHNIVHRDIKPENILLENKNSLLNIKIV- 191
Query: 208 DFGSARPAQSKFALGQR 224
           DFG +      + L  R
Sbjct: 192 DFGLSSFFSKDYKLRDR 208

>pdb|1TKI|A Chain A, Autoinhibited Serine Kinase Domain Of The Giant Muscle Protein Titin Length = 321

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 77/188 (40%), Gaps = 40/188 (21%)
Query: 26  NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN 85
            +Y I   LG G F  V+   ET                      S   TY  K V ++ 
Sbjct: 5   EKYMIAEDLGRGEFGIVHRCVET----------------------SSKKTYMAKFVKVKG 42
Query: 86  NEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDH 145
            +Q+ +V++EI + ++  HRN+L L            E     E  ++    + G  LD 
Sbjct: 43  TDQV-LVKKEISILNIARHRNILHL-----------HESFESMEELVMIFEFISG--LDI 88
Query: 146 AKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAI 205
            + + T     +  +++   +Q+C  L+ +HS      H D++P NI+   R+       
Sbjct: 89  FERINTSAFELNEREIVSYVHQVCEALQFLHS--HNIGHFDIRPENIIYQTRRSST--IK 144
Query: 206 LMDFGSAR 213
           +++FG AR
Sbjct: 145 IIEFGQAR 152

>pdb|3HZT|A Chain A, Crystal Structure Of Toxoplasma Gondii Cdpk3, Tgme49_105860 Length = 467

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 76/185 (41%), Gaps = 36/185 (19%)
Query: 26  NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN 85
           +RY+ +++LG G +  V L K+ +T        G    +K            +KK  +  
Sbjct: 4   DRYQRVKKLGSGAYGEVLLCKDKLT--------GAERAIK-----------IIKKSSVTT 44
Query: 86  NEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDH 145
                 + +E+ V     H N++ L  +     K N         YL+  V+  G L D 
Sbjct: 45  TSNSGALLDEVAVLKQLDHPNIMKL--YEFFEDKRN--------YYLVMEVYRGGELFDE 94
Query: 146 AKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAI 205
             + Q     FS  D   I  Q+ +G  ++H  +    H D+KP N+L+   K +  L  
Sbjct: 95  IILRQK----FSEVDAAVIMKQVLSGTTYLH--KHNIVHRDLKPENLLLES-KSRDALIK 147
Query: 206 LMDFG 210
           ++DFG
Sbjct: 148 IVDFG 152

>pdb|2WEI|A Chain A, Crystal Structure Of The Kinase Domain Of Cryptosporidium Parvum Calcium Dependent Protein Kinase In Complex With 3- Mb-Pp1 Length = 287

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 45/199 (22%), Positives = 82/199 (41%), Gaps = 37/199 (18%)
Query: 26  NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN 85
            RY I+  LG+G F  V   K+ +T    A                      + K   +N
Sbjct: 22  ERYNIVCMLGKGSFGEVLKCKDRITQQEYAVK-------------------VINKASAKN 62
Query: 86  NEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDH 145
            +   ++R E+ +     H N++ L +  I+   ++         Y++  ++  G L D 
Sbjct: 63  KDTSTILR-EVELLKKLDHPNIMKLFE--ILEDSSS--------FYIVGELYTGGELFDE 111
Query: 146 AKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAI 205
                 K++ FS  D  +I  Q+ +G+ +MH  +    H D+KP NIL+  ++    + I
Sbjct: 112 I----IKRKRFSEHDAARIIKQVFSGITYMH--KHNIVHRDLKPENILLESKEKDCDIKI 165
Query: 206 LMDFGSARPAQSKFALGQR 224
           + DFG +   Q    +  R
Sbjct: 166 I-DFGLSTCFQQNTKMKDR 183

>pdb|4APC|A Chain A, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1) Length = 350

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 79/199 (39%), Gaps = 42/199 (21%)
Query: 27  RYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ-- 84
           +Y  L+++GEG F    LVK T                       D   Y +K++ I   
Sbjct: 25  KYVRLQKIGEGSFGKAILVKST----------------------EDGRQYVIKEINISRM 62
Query: 85  NNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLD 144
           ++++ E  R E+ V +   H N++   +         + GS     Y++      G L  
Sbjct: 63  SSKEREESRREVAVLANMKHPNIVQYRESF------EENGSL----YIVMDYCEGGDLFK 112
Query: 145 HAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLA 204
             ++   K   F    +L  F QIC  LKH+H  +    H D+K  NI +T + G   L 
Sbjct: 113 --RINAQKGVLFQEDQILDWFVQICLALKHVHDRK--ILHRDIKSQNIFLT-KDGTVQLG 167
Query: 205 ILMDFGSARPAQSKFALGQ 223
              DFG AR   S   L +
Sbjct: 168 ---DFGIARVLNSTVELAR 183

>pdb|3IGO|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cdpk1, Cgd3_920 Length = 486

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 45/198 (22%), Positives = 82/198 (41%), Gaps = 37/198 (18%)
Query: 27  RYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNN 86
           RY I+  LG+G F  V   K+ +T    A                      + K   +N 
Sbjct: 23  RYNIVCMLGKGSFGEVLKCKDRITQQEYAVK-------------------VINKASAKNK 63
Query: 87  EQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHA 146
           +   ++R E+ +     H N++ L +  I+   ++         Y++  ++  G L D  
Sbjct: 64  DTSTILR-EVELLKKLDHPNIMKLFE--ILEDSSS--------FYIVGELYTGGELFDEI 112
Query: 147 KVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAIL 206
                K++ FS  D  +I  Q+ +G+ +MH  +    H D+KP NIL+  ++    + I+
Sbjct: 113 ----IKRKRFSEHDAARIIKQVFSGITYMH--KHNIVHRDLKPENILLESKEKDCDIKII 166
Query: 207 MDFGSARPAQSKFALGQR 224
            DFG +   Q    +  R
Sbjct: 167 -DFGLSTCFQQNTKMKDR 183

>pdb|3DFA|A Chain A, Crystal Structure Of Kinase Domain Of Calcium-dependent Protein Kinase Cgd3_920 From Cryptosporidium Parvum Length = 286

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 45/199 (22%), Positives = 82/199 (41%), Gaps = 37/199 (18%)
Query: 26  NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN 85
            RY I+  LG+G F  V   K+ +T    A                      + K   +N
Sbjct: 22  ERYNIVCMLGKGSFGEVLKCKDRITQQEYAVK-------------------VINKASAKN 62
Query: 86  NEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDH 145
            +   ++R E+ +     H N++ L +  I+   ++         Y++  ++  G L D 
Sbjct: 63  KDTSTILR-EVELLKKLDHPNIMKLFE--ILEDSSS--------FYIVGELYTGGELFDE 111
Query: 146 AKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAI 205
                 K++ FS  D  +I  Q+ +G+ +MH  +    H D+KP NIL+  ++    + I
Sbjct: 112 I----IKRKRFSEHDAARIIKQVFSGITYMH--KHNIVHRDLKPENILLESKEKDCDIKI 165
Query: 206 LMDFGSARPAQSKFALGQR 224
           + DFG +   Q    +  R
Sbjct: 166 I-DFGLSTCFQQNTKMKDR 183

>pdb|3DXN|A Chain A, Crystal Structure Of The Calcium-dependent Kinase From Toxoplasma Gondii, 541.m00134, Kinase Domain Length = 287

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/185 (23%), Positives = 75/185 (40%), Gaps = 36/185 (19%)
Query: 26  NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN 85
           +RY+ +++LG G +  V L K+ +T        G    +K            +KK  +  
Sbjct: 21  DRYQRVKKLGSGAYGEVLLCKDKLT--------GAERAIK-----------IIKKSSVTT 61
Query: 86  NEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDH 145
                 + +E+ V     H N++ L +              K   YL+  V+  G L D 
Sbjct: 62  TSNSGALLDEVAVLKQLDHPNIMKLYEFF----------EDKRNYYLVMEVYRGGELFDE 111
Query: 146 AKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAI 205
             + Q     FS  D   I  Q+ +G  ++H  +    H D+KP N+L+   K +  L  
Sbjct: 112 IILRQK----FSEVDAAVIMKQVLSGTTYLH--KHNIVHRDLKPENLLLES-KSRDALIK 164
Query: 206 LMDFG 210
           ++DFG
Sbjct: 165 IVDFG 169

>pdb|3FI2|A Chain A, Crystal Structure Of Jnk3 With Amino-Pyrazole Inhibitor, Sr- 3451 Length = 353

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 93/220 (42%), Gaps = 41/220 (18%)
Query: 4   SLSGLNALYDSVNGGGDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANK 63
           S S ++  + SV  G   +    RY+ L+ +G G    V    + V              
Sbjct: 2   SKSKVDNQFYSVEVGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAVL------------- 48
Query: 64  VKDPSHLSDDGTYAMKKVL--IQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKAN 121
                    D   A+KK+    QN    +    E+ +    +H+N++ LL+      K  
Sbjct: 49  ---------DRNVAIKKLSRPFQNQTHAKRAYRELVLMKXVNHKNIISLLN-VFTPQKTL 98
Query: 122 QEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPP 181
           +E     + YL+  + +D  L    +V+Q + +    S +L   YQ+  G+KH+HS    
Sbjct: 99  EEF---QDVYLVMEL-MDANL---CQVIQMELDHERMSYLL---YQMLCGIKHLHS--AG 146
Query: 182 YAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKFAL 221
             H D+KP NI++   K    L IL DFG AR A + F +
Sbjct: 147 IIHRDLKPSNIVV---KSDXTLKIL-DFGLARTAGTSFMM 182

>pdb|3TTJ|A Chain A, Crystal Structure Of Jnk3 Complexed With Cc-359, A Jnk Inhibitor For The Prevention Of Ischemia-Reperfusion Injury Length = 464

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 93/220 (42%), Gaps = 41/220 (18%)
Query: 4   SLSGLNALYDSVNGGGDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANK 63
           S S ++  + SV  G   +    RY+ L+ +G G    V    + V              
Sbjct: 40  SKSKVDNQFYSVEVGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAVL------------- 86
Query: 64  VKDPSHLSDDGTYAMKKV--LIQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKAN 121
                    D   A+KK+    QN    +    E+ +    +H+N++ LL+      K  
Sbjct: 87  ---------DRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLN-VFTPQKTL 136
Query: 122 QEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPP 181
           +E     + YL+  + +D  L    +V+Q + +    S +L   YQ+  G+KH+HS    
Sbjct: 137 EEF---QDVYLVMEL-MDANL---CQVIQMELDHERMSYLL---YQMLCGIKHLHSAG-- 184
Query: 182 YAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKFAL 221
             H D+KP NI++   K    L IL DFG AR A + F +
Sbjct: 185 IIHRDLKPSNIVV---KSDCTLKIL-DFGLARTAGTSFMM 220

>pdb|2WNT|A Chain A, Crystal Structure Of The Human Ribosomal Protein S6 Kinase Length = 330

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 82/183 (44%), Gaps = 26/183 (14%)
Query: 39  FAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRV 98
           F+  Y+VKET+         G  ++ K   H + +  YA+K +     +  E +   +R 
Sbjct: 25  FSDGYVVKETIGV-------GSYSECKRCVHKATNMEYAVKVIDKSKRDPSEEIEILLRY 77
Query: 99  SSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFST 158
                H N++ L D          +G  KH  YL+  +   G LLD  K+++ K  FFS 
Sbjct: 78  GQ---HPNIITLKD-------VYDDG--KH-VYLVTELMRGGELLD--KILRQK--FFSE 120
Query: 159 SDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSK 218
            +   + + I   ++++HS      H D+KP NIL     G P    + DFG A+  +++
Sbjct: 121 REASFVLHTIGKTVEYLHS--QGVVHRDLKPSNILYVDESGNPECLRICDFGFAKQLRAE 178
Query: 219 FAL 221
             L
Sbjct: 179 NGL 181

>pdb|3RNY|A Chain A, Crystal Structure Of Human Rsk1 C-Terminal Kinase Domain Length = 346

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 82/183 (44%), Gaps = 26/183 (14%)
Query: 39  FAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRV 98
           F+  Y+VKET+         G  ++ K   H + +  YA+K +     +  E +   +R 
Sbjct: 25  FSDGYVVKETIGV-------GSYSECKRCVHKATNMEYAVKVIDKSKRDPSEEIEILLRY 77
Query: 99  SSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFST 158
                H N++ L D          +G  KH  YL+  +   G LLD  K+++ K  FFS 
Sbjct: 78  GQ---HPNIITLKD-------VYDDG--KH-VYLVTELMRGGELLD--KILRQK--FFSE 120
Query: 159 SDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSK 218
            +   + + I   ++++HS      H D+KP NIL     G P    + DFG A+  +++
Sbjct: 121 REASFVLHTIGKTVEYLHSQG--VVHRDLKPSNILYVDESGNPECLRICDFGFAKQLRAE 178
Query: 219 FAL 221
             L
Sbjct: 179 NGL 181

>pdb|2Z7Q|A Chain A, Crystal Structure Of The N-Terminal Kinase Domain Of Human Rsk-1 Bound To Amp-Pcp Length = 321

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 86/192 (44%), Gaps = 37/192 (19%)
Query: 24  NENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLI 83
           + + + +L+ LG+G F  V+LV++    D+               HL     YAM KVL 
Sbjct: 26  DPSHFELLKVLGQGSFGKVFLVRKVTRPDS--------------GHL-----YAM-KVLK 65
Query: 84  QNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLL 143
           +   +   VR+ +R       R++L  ++H  + VK +     + + YL+      G L 
Sbjct: 66  KATLK---VRDRVRTK---MERDILADVNHPFV-VKLHYAFQTEGKLYLILDFLRGGDLF 118
Query: 144 DHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPL 203
                  +K+  F+  DV     ++  GL H+HSL   Y   D+KP NIL+   +G   L
Sbjct: 119 TRL----SKEVMFTEEDVKFYLAELALGLDHLHSLGIIY--RDLKPENILLD-EEGHIKL 171
Query: 204 AILMDFGSARPA 215
               DFG ++ A
Sbjct: 172 T---DFGLSKEA 180

>pdb|1JNK|A Chain A, The C-Jun N-Terminal Kinase (Jnk3s) Complexed With Mgamp-Pnp Length = 423

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 93/220 (42%), Gaps = 41/220 (18%)
Query: 4   SLSGLNALYDSVNGGGDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANK 63
           S S ++  + SV  G   +    RY+ L+ +G G    V    + V              
Sbjct: 40  SKSKVDNQFYSVEVGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAVL------------- 86
Query: 64  VKDPSHLSDDGTYAMKKV--LIQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKAN 121
                    D   A+KK+    QN    +    E+ +    +H+N++ LL+      K  
Sbjct: 87  ---------DRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLN-VFTPQKTL 136
Query: 122 QEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPP 181
           +E     + YL+  + +D  L    +V+Q + +    S +L   YQ+  G+KH+HS    
Sbjct: 137 EEF---QDVYLVMEL-MDANL---CQVIQMELDHERMSYLL---YQMLCGIKHLHSAG-- 184
Query: 182 YAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKFAL 221
             H D+KP NI++   K    L IL DFG AR A + F +
Sbjct: 185 IIHRDLKPSNIVV---KSDCTLKIL-DFGLARTAGTSFMM 220

>pdb|2VZ6|A Chain A, Structure Of Human Calcium Calmodulin Dependent Protein Kinase Type Ii Alpha (Camk2a) In Complex With Indirubin E804 Length = 313

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 79/189 (41%), Gaps = 39/189 (20%)
Query: 25  ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ 84
           ++ Y++  +LG+G F+ V    + +     AA                      KK+  +
Sbjct: 21  QSMYQLFEELGKGAFSVVRRCVKVLAGQEYAAK-----------------IINTKKLSAR 63
Query: 85  NNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLD 144
           ++++LE    E R+  L  H N++ L D        ++EG      YL+F +   G L +
Sbjct: 64  DHQKLE---REARICRLLKHPNIVRLHD------SISEEG----HHYLIFDLVTGGELFE 110
Query: 145 HAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCR-KGQPPL 203
                   +E++S +D      QI   + H H +     H D+KP N+L+  + KG    
Sbjct: 111 DI----VAREYYSEADASHCIQQILEAVLHCHQM--GVVHRDLKPENLLLASKLKGAA-- 162
Query: 204 AILMDFGSA 212
             L DFG A
Sbjct: 163 VKLADFGLA 171

>pdb|3FV8|A Chain A, Jnk3 Bound To Piperazine Amide Inhibitor, Sr2774 Length = 355

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 93/220 (42%), Gaps = 41/220 (18%)
Query: 4   SLSGLNALYDSVNGGGDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANK 63
           S S ++  + SV  G   +    RY+ L+ +G G    V    + V              
Sbjct: 2   SKSKVDNQFYSVEVGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAVL------------- 48
Query: 64  VKDPSHLSDDGTYAMKKV--LIQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKAN 121
                    D   A+KK+    QN    +    E+ +    +H+N++ LL+      K  
Sbjct: 49  ---------DRNVAIKKLSRPFQNQTHAKRAYRELVLMKXVNHKNIISLLN-VFTPQKTL 98
Query: 122 QEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPP 181
           +E     + YL+  + +D  L    +V+Q + +    S +L   YQ+  G+KH+HS    
Sbjct: 99  EEF---QDVYLVMEL-MDANL---XQVIQMELDHERMSYLL---YQMLCGIKHLHS--AG 146
Query: 182 YAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKFAL 221
             H D+KP NI++   K    L IL DFG AR A + F +
Sbjct: 147 IIHRDLKPSNIVV---KSDXTLKIL-DFGLARTAGTSFMM 182

>pdb|3PTG|A Chain A, Design And Synthesis Of A Novel, Orally Efficacious Tri-Substituted Thiophene Based Jnk Inhibitor Length = 363

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 93/220 (42%), Gaps = 41/220 (18%)
Query: 4   SLSGLNALYDSVNGGGDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANK 63
           S S ++  + SV  G   +    RY+ L+ +G G    V    + V              
Sbjct: 2   SKSKVDNQFYSVEVGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAVL------------- 48
Query: 64  VKDPSHLSDDGTYAMKKV--LIQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKAN 121
                    D   A+KK+    QN    +    E+ +    +H+N++ LL+      K  
Sbjct: 49  ---------DRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLN-VFTPQKTL 98
Query: 122 QEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPP 181
           +E     + YL+  + +D  L    +V+Q + +    S +L   YQ+  G+KH+HS    
Sbjct: 99  EEF---QDVYLVMEL-MDANL---CQVIQMELDHERMSYLL---YQMLCGIKHLHSAG-- 146
Query: 182 YAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKFAL 221
             H D+KP NI++   K    L IL DFG AR A + F +
Sbjct: 147 IIHRDLKPSNIVV---KSDCTLKIL-DFGLARTAGTSFMM 182

>pdb|2OK1|A Chain A, Crystal Structure Of Jnk3 Bound To N-Benzyl-4-(4-(3- Chlorophenyl)-1h-Pyrazol-3-Yl)-1h-Pyrrole-2-Carboxamide Length = 365

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 93/220 (42%), Gaps = 41/220 (18%)
Query: 4   SLSGLNALYDSVNGGGDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANK 63
           S S ++  + SV  G   +    RY+ L+ +G G    V    + V              
Sbjct: 3   SKSKVDNQFYSVEVGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAVL------------- 49
Query: 64  VKDPSHLSDDGTYAMKKV--LIQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKAN 121
                    D   A+KK+    QN    +    E+ +    +H+N++ LL+      K  
Sbjct: 50  ---------DRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLN-VFTPQKTL 99
Query: 122 QEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPP 181
           +E     + YL+  + +D  L    +V+Q + +    S +L   YQ+  G+KH+HS    
Sbjct: 100 EEF---QDVYLVMEL-MDANL---CQVIQMELDHERMSYLL---YQMLCGIKHLHSAG-- 147
Query: 182 YAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKFAL 221
             H D+KP NI++   K    L IL DFG AR A + F +
Sbjct: 148 IIHRDLKPSNIVV---KSDCTLKIL-DFGLARTAGTSFMM 183

>pdb|1PMN|A Chain A, Crystal Structure Of Jnk3 In Complex With An Imidazole- Pyrimidine Inhibitor Length = 364

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 93/220 (42%), Gaps = 41/220 (18%)
Query: 4   SLSGLNALYDSVNGGGDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANK 63
           S S ++  + SV  G   +    RY+ L+ +G G    V    + V              
Sbjct: 3   SKSKVDNQFYSVEVGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAVL------------- 49
Query: 64  VKDPSHLSDDGTYAMKKV--LIQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKAN 121
                    D   A+KK+    QN    +    E+ +    +H+N++ LL+      K  
Sbjct: 50  ---------DRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLN-VFTPQKTL 99
Query: 122 QEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPP 181
           +E     + YL+  + +D  L    +V+Q + +    S +L   YQ+  G+KH+HS    
Sbjct: 100 EEF---QDVYLVMEL-MDANL---CQVIQMELDHERMSYLL---YQMLCGIKHLHSAG-- 147
Query: 182 YAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKFAL 221
             H D+KP NI++   K    L IL DFG AR A + F +
Sbjct: 148 IIHRDLKPSNIVV---KSDCTLKIL-DFGLARTAGTSFMM 183

>pdb|2O0U|A Chain A, Crystal Structure Of Human Jnk3 Complexed With N-{3-Cyano-6-[3-(1- Piperidinyl)propanoyl]-4,5,6,7-Tetrahydrothieno[2, 3-C]pyridin-2-Yl}- 1-Naphthalenecarboxamide Length = 364

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 93/220 (42%), Gaps = 41/220 (18%)
Query: 4   SLSGLNALYDSVNGGGDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANK 63
           S S ++  + SV  G   +    RY+ L+ +G G    V    + V              
Sbjct: 2   SKSKVDNQFYSVEVGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAVL------------- 48
Query: 64  VKDPSHLSDDGTYAMKKV--LIQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKAN 121
                    D   A+KK+    QN    +    E+ +    +H+N++ LL+      K  
Sbjct: 49  ---------DRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLN-VFTPQKTL 98
Query: 122 QEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPP 181
           +E     + YL+  + +D  L    +V+Q + +    S +L   YQ+  G+KH+HS    
Sbjct: 99  EEF---QDVYLVMEL-MDANL---CQVIQMELDHERMSYLL---YQMLCGIKHLHSAG-- 146
Query: 182 YAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKFAL 221
             H D+KP NI++   K    L IL DFG AR A + F +
Sbjct: 147 IIHRDLKPSNIVV---KSDCTLKIL-DFGLARTAGTSFMM 182

>pdb|3OXI|A Chain A, Design And Synthesis Of Disubstituted Thiophene And Thiazole Based Inhibitors Of Jnk For The Treatment Of Neurodegenerative Diseases Length = 362

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 93/220 (42%), Gaps = 41/220 (18%)
Query: 4   SLSGLNALYDSVNGGGDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANK 63
           S S ++  + SV  G   +    RY+ L+ +G G    V    + V              
Sbjct: 1   SKSKVDNQFYSVEVGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAVL------------- 47
Query: 64  VKDPSHLSDDGTYAMKKV--LIQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKAN 121
                    D   A+KK+    QN    +    E+ +    +H+N++ LL+      K  
Sbjct: 48  ---------DRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLN-VFTPQKTL 97
Query: 122 QEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPP 181
           +E     + YL+  + +D  L    +V+Q + +    S +L   YQ+  G+KH+HS    
Sbjct: 98  EEF---QDVYLVMEL-MDANL---CQVIQMELDHERMSYLL---YQMLCGIKHLHSAG-- 145
Query: 182 YAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKFAL 221
             H D+KP NI++   K    L IL DFG AR A + F +
Sbjct: 146 IIHRDLKPSNIVV---KSDCTLKIL-DFGLARTAGTSFMM 181

>pdb|3BHH|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent Protein Kinase Iib Isoform 1 (camk2b) Length = 295

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 77/191 (40%), Gaps = 37/191 (19%)
Query: 26  NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN 85
           + Y++   +G+G F+ V    +  T    AA                      KK+  ++
Sbjct: 4   DEYQLYEDIGKGAFSVVRRCVKLCTGHEYAAK-----------------IINTKKLSARD 46
Query: 86  NEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDH 145
           +++LE    E R+  L  H N++ L D        ++EG      YL+F +   G L + 
Sbjct: 47  HQKLE---REARICRLLKHSNIVRLHD------SISEEGF----HYLVFDLVTGGELFED 93
Query: 146 AKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAI 205
                  +E++S +D      QI   + H H +     H D+KP N+L+   K +     
Sbjct: 94  I----VAREYYSEADASHCIQQILEAVLHCHQM--GVVHRDLKPENLLLA-SKCKGAAVK 146
Query: 206 LMDFGSARPAQ 216
           L DFG A   Q
Sbjct: 147 LADFGLAIEVQ 157

>pdb|3KVX|A Chain A, Jnk3 Bound To Aminopyrimidine Inhibitor, Sr-3562 Length = 364

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 93/220 (42%), Gaps = 41/220 (18%)
Query: 4   SLSGLNALYDSVNGGGDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANK 63
           S S ++  + SV  G   +    RY+ L+ +G G    V    + V              
Sbjct: 2   SKSKVDNQFYSVEVGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAVL------------- 48
Query: 64  VKDPSHLSDDGTYAMKKV--LIQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKAN 121
                    D   A+KK+    QN    +    E+ +    +H+N++ LL+      K  
Sbjct: 49  ---------DRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLN-VFTPQKTL 98
Query: 122 QEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPP 181
           +E     + YL+  + +D  L    +V+Q + +    S +L   YQ+  G+KH+HS    
Sbjct: 99  EEF---QDVYLVMEL-MDANL---XQVIQMELDHERMSYLL---YQMLXGIKHLHSAG-- 146
Query: 182 YAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKFAL 221
             H D+KP NI++   K    L IL DFG AR A + F +
Sbjct: 147 IIHRDLKPSNIVV---KSDXTLKIL-DFGLARTAGTSFMM 182

>pdb|3FI3|A Chain A, Crystal Structure Of Jnk3 With Indazole Inhibitor, Sr-3737 Length = 364

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 93/220 (42%), Gaps = 41/220 (18%)
Query: 4   SLSGLNALYDSVNGGGDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANK 63
           S S ++  + SV  G   +    RY+ L+ +G G    V    + V              
Sbjct: 2   SKSKVDNQFYSVEVGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAVL------------- 48
Query: 64  VKDPSHLSDDGTYAMKKV--LIQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKAN 121
                    D   A+KK+    QN    +    E+ +    +H+N++ LL+      K  
Sbjct: 49  ---------DRNVAIKKLSRPFQNQTHAKRAYRELVLMKXVNHKNIISLLN-VFTPQKTL 98
Query: 122 QEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPP 181
           +E     + YL+  + +D  L    +V+Q + +    S +L   YQ+  G+KH+HS    
Sbjct: 99  EEF---QDVYLVMEL-MDANL---XQVIQMELDHERMSYLL---YQMLXGIKHLHSAG-- 146
Query: 182 YAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKFAL 221
             H D+KP NI++   K    L IL DFG AR A + F +
Sbjct: 147 IIHRDLKPSNIVV---KSDXTLKIL-DFGLARTAGTSFMM 182

>pdb|4EL9|A Chain A, Structure Of N-Terminal Kinase Domain Of Rsk2 With Afzelin Length = 305

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 76/171 (44%), Gaps = 33/171 (19%)
Query: 24  NENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLI 83
           + +++ +L+ LG+G F  V+LVK+   +DA                      YAM KVL 
Sbjct: 23  DPSQFELLKVLGQGSFGKVFLVKKISGSDARQ-------------------LYAM-KVLK 62
Query: 84  QNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLL 143
           +   +   VR+ +R       R++L  ++H  I VK +     + + YL+      G L 
Sbjct: 63  KATLK---VRDRVRTK---MERDILVEVNHPFI-VKLHYAFQTEGKLYLILDFLRGGDLF 115
Query: 144 DHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILI 194
                  +K+  F+  DV     ++   L H+HSL   Y   D+KP NIL+
Sbjct: 116 TRL----SKEVMFTEEDVKFYLAELALALDHLHSLGIIY--RDLKPENILL 160

>pdb|2WEL|A Chain A, Crystal Structure Of Su6656-Bound CalciumCALMODULIN- Dependent Protein Kinase Ii Delta In Complex With Calmodulin Length = 327

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 77/191 (40%), Gaps = 37/191 (19%)
Query: 26  NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN 85
           + Y++  +LG+G F+ V    +  T    AA                      KK+  ++
Sbjct: 4   DEYQLFEELGKGAFSVVRRCMKIPTGQEYAAK-----------------IINTKKLSARD 46
Query: 86  NEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDH 145
           +++LE    E R+  L  H N++ L D        ++EG      YL+F +   G L + 
Sbjct: 47  HQKLE---REARICRLLKHPNIVRLHD------SISEEGF----HYLVFDLVTGGELFED 93
Query: 146 AKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAI 205
                  +E++S +D      QI   + H H       H D+KP N+L+   K +     
Sbjct: 94  I----VAREYYSEADASHCIQQILESVNHCHL--NGIVHRDLKPENLLLAS-KSKGAAVK 146
Query: 206 LMDFGSARPAQ 216
           L DFG A   Q
Sbjct: 147 LADFGLAIEVQ 157

>pdb|2VN9|A Chain A, Crystal Structure Of Human Calcium Calmodulin Dependent Protein Kinase Ii Delta Isoform 1, Camkd Length = 301

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 77/191 (40%), Gaps = 37/191 (19%)
Query: 26  NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN 85
           + Y++  +LG+G F+ V    +  T    AA                      KK+  ++
Sbjct: 4   DEYQLFEELGKGAFSVVRRCMKIPTGQEYAAK-----------------IINTKKLSARD 46
Query: 86  NEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDH 145
           +++LE    E R+  L  H N++ L D        ++EG      YL+F +   G L + 
Sbjct: 47  HQKLE---REARICRLLKHPNIVRLHD------SISEEGF----HYLVFDLVTGGELFED 93
Query: 146 AKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAI 205
                  +E++S +D      QI   + H H       H D+KP N+L+   K +     
Sbjct: 94  I----VAREYYSEADASHCIQQILESVNHCHL--NGIVHRDLKPENLLLAS-KSKGAAVK 146
Query: 206 LMDFGSARPAQ 216
           L DFG A   Q
Sbjct: 147 LADFGLAIEVQ 157

>pdb|3UBD|A Chain A, Structure Of N-Terminal Domain Of Rsk2 Kinase In Complex With Flavonoid Glycoside Sl0101 Length = 304

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 76/171 (44%), Gaps = 33/171 (19%)
Query: 24  NENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLI 83
           + +++ +L+ LG+G F  V+LVK+   +DA                      YAM KVL 
Sbjct: 22  DPSQFELLKVLGQGSFGKVFLVKKISGSDARQ-------------------LYAM-KVLK 61
Query: 84  QNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLL 143
           +   +   VR+ +R       R++L  ++H  I VK +     + + YL+      G L 
Sbjct: 62  KATLK---VRDRVRTK---MERDILVEVNHPFI-VKLHYAFQTEGKLYLILDFLRGGDLF 114
Query: 144 DHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILI 194
                  +K+  F+  DV     ++   L H+HSL   Y   D+KP NIL+
Sbjct: 115 TRL----SKEVMFTEEDVKFYLAELALALDHLHSLGIIY--RDLKPENILL 159

>pdb|3VUM|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M7 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 70/138 (50%), Gaps = 17/138 (12%)
Query: 84  QNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLL 143
           QN    +    E+ +  + +H+N++ LL+      K+ +E     + Y++  + +D  L 
Sbjct: 62  QNQTHAKRAYRELVLMKVVNHKNIIGLLN-VFTPQKSLEEF---QDVYIVMEL-MDANL- 115
Query: 144 DHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPL 203
             ++V+Q + +    S +L   YQ+  G+KH+HS      H D+KP NI++   K    L
Sbjct: 116 --SQVIQMELDHERMSYLL---YQMLVGIKHLHSAG--IIHRDLKPSNIVV---KSDATL 165
Query: 204 AILMDFGSARPAQSKFAL 221
            IL DFG AR A + F +
Sbjct: 166 KIL-DFGLARTAGTSFMM 182

>pdb|2EXC|X Chain X, Inhibitor Complex Of Jnk3 Length = 356

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 73/151 (48%), Gaps = 19/151 (12%)
Query: 73  DGTYAMKKV--LIQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEA 130
           D   A+KK+    QN    +    E+ +    +H+N++ LL+      K  +E     + 
Sbjct: 43  DRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLN-VFTPQKTLEEF---QDV 98
Query: 131 YLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPG 190
           YL+  + +D  L    +V+Q + +    S +L   YQ+  G+KH+HS      H D+KP 
Sbjct: 99  YLVMEL-MDANL---CQVIQMELDHERMSYLL---YQMLCGIKHLHSAG--IIHRDLKPS 149
Query: 191 NILITCRKGQPPLAILMDFGSARPAQSKFAL 221
           NI++   K    L IL DFG AR A + F +
Sbjct: 150 NIVV---KSDCTLKIL-DFGLARTAGTSFMM 176

>pdb|2B1P|A Chain A, Inhibitor Complex Of Jnk3 Length = 355

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 73/151 (48%), Gaps = 19/151 (12%)
Query: 73  DGTYAMKKV--LIQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEA 130
           D   A+KK+    QN    +    E+ +    +H+N++ LL+      K  +E     + 
Sbjct: 42  DRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLN-VFTPQKTLEEF---QDV 97
Query: 131 YLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPG 190
           YL+  + +D  L    +V+Q + +    S +L   YQ+  G+KH+HS      H D+KP 
Sbjct: 98  YLVMEL-MDANL---CQVIQMELDHERMSYLL---YQMLCGIKHLHSAG--IIHRDLKPS 148
Query: 191 NILITCRKGQPPLAILMDFGSARPAQSKFAL 221
           NI++   K    L IL DFG AR A + F +
Sbjct: 149 NIVV---KSDCTLKIL-DFGLARTAGTSFMM 175

>pdb|4H36|A Chain A, Crystal Structure Of Jnk3 In Complex With Atf2 Peptide Length = 356

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 73/151 (48%), Gaps = 19/151 (12%)
Query: 73  DGTYAMKKV--LIQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEA 130
           D   A+KK+    QN    +    E+ +    +H+N++ LL+      K  +E     + 
Sbjct: 43  DRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLN-VFTPQKTLEEF---QDV 98
Query: 131 YLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPG 190
           YL+  + +D  L    +V+Q + +    S +L   YQ+  G+KH+HS      H D+KP 
Sbjct: 99  YLVMEL-MDANL---CQVIQMELDHERMSYLL---YQMLCGIKHLHSAG--IIHRDLKPS 149
Query: 191 NILITCRKGQPPLAILMDFGSARPAQSKFAL 221
           NI++   K    L IL DFG AR A + F +
Sbjct: 150 NIVV---KSDCTLKIL-DFGLARTAGTSFMM 176

>pdb|2X4F|A Chain A, The Crystal Structure Of The Human Myosin Light Chain Kinase Loc340156. Length = 373

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 60/126 (47%), Gaps = 21/126 (16%)
Query: 90  EMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVM 149
           E V+ EI V +   H NL+ L D    A ++      K++  L+      G L D     
Sbjct: 131 EEVKNEISVMNQLDHANLIQLYD----AFES------KNDIVLVMEYVDGGELFD----- 175
Query: 150 QTKKEFFSTSDVLQIFY--QICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILM 207
           +   E ++ +++  I +  QIC G++HMH +     H D+KP NIL   R  +     ++
Sbjct: 176 RIIDESYNLTELDTILFMKQICEGIRHMHQMY--ILHLDLKPENILCVNRDAKQ--IKII 231
Query: 208 DFGSAR 213
           DFG AR
Sbjct: 232 DFGLAR 237

>pdb|2R9S|A Chain A, C-Jun N-Terminal Kinase 3 With 3,5-Disubstituted Quinoline Inhibitor Length = 356

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 73/151 (48%), Gaps = 19/151 (12%)
Query: 73  DGTYAMKKV--LIQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEA 130
           D   A+KK+    QN    +    E+ +    +H+N++ LL+      K  +E     + 
Sbjct: 42  DRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLN-VFTPQKTLEEF---QDV 97
Query: 131 YLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPG 190
           YL+  + +D  L    +V+Q + +    S +L   YQ+  G+KH+HS      H D+KP 
Sbjct: 98  YLVMEL-MDANL---XQVIQMELDHERMSYLL---YQMLXGIKHLHSAG--IIHRDLKPS 148
Query: 191 NILITCRKGQPPLAILMDFGSARPAQSKFAL 221
           NI++   K    L IL DFG AR A + F +
Sbjct: 149 NIVV---KSDXTLKIL-DFGLARTAGTSFMM 175

>pdb|3VUK|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M5 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 70/138 (50%), Gaps = 17/138 (12%)
Query: 84  QNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLL 143
           QN    +    E+ +  + +H+N++ LL+      K+ +E     + Y++  + +D  L 
Sbjct: 62  QNQTHAKRAYRELVLMKVVNHKNIIGLLN-VFTPQKSLEEF---QDVYIVMEL-MDANL- 115
Query: 144 DHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPL 203
             ++V+Q + +    S +L   YQ+  G+KH+HS      H D+KP NI++   K    L
Sbjct: 116 --SQVIQMELDHERMSYLL---YQMLVGIKHLHSAG--IIHRDLKPSNIVV---KSDATL 165
Query: 204 AILMDFGSARPAQSKFAL 221
            IL DFG AR A + F +
Sbjct: 166 KIL-DFGLARTAGTSFMM 182

>pdb|3VUL|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M1 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 70/138 (50%), Gaps = 17/138 (12%)
Query: 84  QNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLL 143
           QN    +    E+ +  + +H+N++ LL+      K+ +E     + Y++  + +D  L 
Sbjct: 62  QNQTHAKRAYRELVLMKVVNHKNIIGLLN-VFTPQKSLEEF---QDVYIVMEL-MDANL- 115
Query: 144 DHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPL 203
             ++V+Q + +    S +L   YQ+  G+KH+HS      H D+KP NI++   K    L
Sbjct: 116 --SQVIQMELDHERMSYLL---YQMLVGIKHLHSAG--IIHRDLKPSNIVV---KSDATL 165
Query: 204 AILMDFGSARPAQSKFAL 221
            IL DFG AR A + F +
Sbjct: 166 KIL-DFGLARTAGTSFMM 182

>pdb|3IS5|A Chain A, Crystal Structure Of Cdpk Kinase Domain From Toxoplasma Gondii, Tgme49_018720 Length = 285

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 72/182 (39%), Gaps = 34/182 (18%)
Query: 32  RQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEM 91
           R+LG G F  V+LV+E         S GL   +K    ++ D          ++   +E 
Sbjct: 28  RKLGSGAFGDVHLVEER--------SSGLERVIKT---INKD----------RSQVPMEQ 66
Query: 92  VREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQT 151
           +  EI V     H N++      I  V  +      H  Y++      G LL+     Q 
Sbjct: 67  IEAEIEVLKSLDHPNII-----KIFEVFEDY-----HNMYIVMETCEGGELLERIVSAQA 116
Query: 152 KKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGS 211
           + +  S   V ++  Q+   L + HS      H D+KP NIL        P+ I+ DFG 
Sbjct: 117 RGKALSEGYVAELMKQMMNALAYFHSQH--VVHKDLKPENILFQDTSPHSPIKII-DFGL 173
Query: 212 AR 213
           A 
Sbjct: 174 AE 175

>pdb|3G51|A Chain A, Structural Diversity Of The Active Conformation Of The N- Terminal Kinase Domain Of P90 Ribosomal S6 Kinase 2 Length = 325

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 76/171 (44%), Gaps = 33/171 (19%)
Query: 24  NENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLI 83
           + +++ +L+ LG+G F  V+LVK+   +DA                      YAM KVL 
Sbjct: 22  DPSQFELLKVLGQGSFGKVFLVKKISGSDARQ-------------------LYAM-KVLK 61
Query: 84  QNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLL 143
           +   +   VR+ +R       R++L  ++H  I VK +     + + YL+      G L 
Sbjct: 62  KATLK---VRDRVRTK---MERDILVEVNHPFI-VKLHYAFQTEGKLYLILDFLRGGDLF 114
Query: 144 DHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILI 194
                  +K+  F+  DV     ++   L H+HSL   Y   D+KP NIL+
Sbjct: 115 TRL----SKEVMFTEEDVKFYLAELALALDHLHSLGIIY--RDLKPENILL 159

>pdb|3VUI|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M2 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 70/138 (50%), Gaps = 17/138 (12%)
Query: 84  QNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLL 143
           QN    +    E+ +  + +H+N++ LL+      K+ +E     + Y++  + +D  L 
Sbjct: 62  QNQTHAKRAYRELVLMKVVNHKNIIGLLN-VFTPQKSLEEF---QDVYIVMEL-MDANL- 115
Query: 144 DHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPL 203
             ++V+Q + +    S +L   YQ+  G+KH+HS      H D+KP NI++   K    L
Sbjct: 116 --SQVIQMELDHERMSYLL---YQMLCGIKHLHSAG--IIHRDLKPSNIVV---KSDATL 165
Query: 204 AILMDFGSARPAQSKFAL 221
            IL DFG AR A + F +
Sbjct: 166 KIL-DFGLARTAGTSFMM 182

>pdb|1U5Q|A Chain A, Crystal Structure Of The Tao2 Kinase Domain: Activation And Specifity Of A Ste20p Map3k Length = 348

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 44/190 (23%), Positives = 80/190 (42%), Gaps = 43/190 (22%)
Query: 25  ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ 84
           E  +  LR++G G F  VY  ++   ++  A                   +Y+ K    Q
Sbjct: 53  EKLFSDLREIGHGSFGAVYFARDVRNSEVVAIK---------------KMSYSGK----Q 93
Query: 85  NNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSW--KHEAYLLFPVHLDGTL 142
           +NE+ + + +E+R      H N +               G +  +H A+L+    ++  L
Sbjct: 94  SNEKWQDIIKEVRFLQKLRHPNTI------------QYRGCYLREHTAWLV----MEYCL 137
Query: 143 LDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPP 202
              + +++  K+     ++  + +    GL ++HS      H DVK GNIL++    +P 
Sbjct: 138 GSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHSHN--MIHRDVKAGNILLS----EPG 191
Query: 203 LAILMDFGSA 212
           L  L DFGSA
Sbjct: 192 LVKLGDFGSA 201

>pdb|2WQM|A Chain A, Structure Of Apo Human Nek7 Length = 310

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 70/168 (41%), Gaps = 31/168 (18%)
Query: 28  YRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNE 87
           +RI +++G G F+ VY           AA             L D    A+KKV I    
Sbjct: 34  FRIEKKIGRGQFSEVY----------RAAC------------LLDGVPVALKKVQI---- 67
Query: 88  QLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAK 147
             +++  + R   +    +LL  L+H  + +K        +E  ++  +   G L    K
Sbjct: 68  -FDLMDAKARADCI-KEIDLLKQLNHPNV-IKYYASFIEDNELNIVLELADAGDLSRMIK 124
Query: 148 VMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILIT 195
             + +K       V + F Q+C+ L+HMHS      H D+KP N+ IT
Sbjct: 125 HFKKQKRLIPERTVWKYFVQLCSALEHMHSRR--VMHRDIKPANVFIT 170

>pdb|2J90|A Chain A, Crystal Structure Of Human Zip Kinase In Complex With A Tetracyclic Pyridone Inhibitor (pyridone 6) Length = 304

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 76/195 (38%), Gaps = 36/195 (18%)
Query: 25  ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ 84
           E+ Y +  +LG G FA V   ++  T    AA                   +  K+ L  
Sbjct: 25  EDHYEMGEELGSGQFAIVRKCRQKGTGKEYAAK------------------FIKKRRLXS 66
Query: 85  NNEQL--EMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTL 142
           +   +  E +  E+ +     H N++ L  H I   K +          L+  +   G L
Sbjct: 67  SRRGVSREEIEREVNILREIRHPNIITL--HDIFENKTD--------VVLILELVSGGEL 116
Query: 143 LDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPP 202
            D       +KE  +  +  Q   QI  G+ ++HS     AH D+KP NI++  +    P
Sbjct: 117 FD----FLAEKESLTEDEATQFLKQILDGVHYLHS--KRIAHFDLKPENIMLLDKNVPNP 170
Query: 203 LAILMDFGSARPAQS 217
              L+DFG A   ++
Sbjct: 171 RIKLIDFGIAHKIEA 185

>pdb|2GCD|A Chain A, Tao2 Kinase Domain-Staurosporine Structure Length = 309

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 44/190 (23%), Positives = 80/190 (42%), Gaps = 43/190 (22%)
Query: 25  ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ 84
           E  +  LR++G G F  VY  ++   ++  A                   +Y+ K    Q
Sbjct: 14  EKLFSDLREIGHGSFGAVYFARDVRNSEVVAIK---------------KMSYSGK----Q 54
Query: 85  NNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSW--KHEAYLLFPVHLDGTL 142
           +NE+ + + +E+R      H N +               G +  +H A+L+    ++  L
Sbjct: 55  SNEKWQDIIKEVRFLQKLRHPNTI------------QYRGCYLREHTAWLV----MEYCL 98
Query: 143 LDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPP 202
              + +++  K+     ++  + +    GL ++HS      H DVK GNIL++    +P 
Sbjct: 99  GSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHSHN--MIHRDVKAGNILLS----EPG 152
Query: 203 LAILMDFGSA 212
           L  L DFGSA
Sbjct: 153 LVKLGDFGSA 162

>pdb|3LIJ|A Chain A, Crystal Structure Of Full Length Cpcdpk3 (Cgd5_820) In Complex With Ca2+ And Amppnp Length = 494

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 46/197 (23%), Positives = 87/197 (44%), Gaps = 37/197 (18%)
Query: 28  YRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNE 87
           Y+ +++LG G +  V L ++ VT    A       K+   + +S   T +  K+L     
Sbjct: 39  YQRVKKLGSGAYGEVLLCRDKVTHVERAI------KIIRKTSVS---TSSNSKLL----- 84
Query: 88  QLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAK 147
                 EE+ V  L  H N++ L D              K   YL+   +  G L D  +
Sbjct: 85  ------EEVAVLKLLDHPNIMKLYDFF----------EDKRNYYLVMECYKGGELFD--E 126
Query: 148 VMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILM 207
           ++   K  F+  D   I  Q+ +G+ ++H  +    H D+KP N+L+  ++ +  L  ++
Sbjct: 127 IIHRMK--FNEVDAAVIIKQVLSGVTYLH--KHNIVHRDLKPENLLLESKE-KDALIKIV 181
Query: 208 DFGSARPAQSKFALGQR 224
           DFG +   +++  + +R
Sbjct: 182 DFGLSAVFENQKKMKER 198

>pdb|2Y0A|A Chain A, Structure Of Dapk1 Construct Residues 1-304 Length = 326

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 16/123 (13%)
Query: 90  EMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVM 149
           E +  E+ +     H N++ L  H +   K +          L+  +   G L D     
Sbjct: 59  EDIEREVSILKEIQHPNVITL--HEVYENKTD--------VILILELVAGGELFD----F 104
Query: 150 QTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDF 209
             +KE  +  +  +   QI  G+ ++HSL+   AH D+KP NI++  R    P   ++DF
Sbjct: 105 LAEKESLTEEEATEFLKQILNGVYYLHSLQ--IAHFDLKPENIMLLDRNVPKPRIKIIDF 162
Query: 210 GSA 212
           G A
Sbjct: 163 GLA 165

>pdb|2XUU|A Chain A, Crystal Structure Of A Dap-Kinase 1 Mutant Length = 334

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Query: 127 KHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHND 186
           K +  L+  +   G L D       +KE  +  +  +   QI  G+ ++HSL+   AH D
Sbjct: 86  KTDVILILELVAGGELFDFL----AEKESLTEEEATEFLKQILNGVYYLHSLQ--IAHFD 139
Query: 187 VKPGNILITCRKGQPPLAILMDFGSA 212
           +KP NI++  R    P   ++DFG A
Sbjct: 140 LKPENIMLLDRNVPKPRIKIIDFGLA 165

>pdb|2X0G|A Chain A, X-ray Structure Of A Dap-kinase Calmodulin Complex Length = 334

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Query: 127 KHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHND 186
           K +  L+  +   G L D       +KE  +  +  +   QI  G+ ++HSL+   AH D
Sbjct: 86  KTDVILILELVAGGELFDFL----AEKESLTEEEATEFLKQILNGVYYLHSLQ--IAHFD 139
Query: 187 VKPGNILITCRKGQPPLAILMDFGSA 212
           +KP NI++  R    P   ++DFG A
Sbjct: 140 LKPENIMLLDRNVPKPRIKIIDFGLA 165

>pdb|2XZS|A Chain A, Death Associated Protein Kinase 1 Residues 1-312 Length = 312

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 16/123 (13%)
Query: 90  EMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVM 149
           E +  E+ +     H N++ L  H +   K +          L+  +   G L D     
Sbjct: 59  EDIEREVSILKEIQHPNVITL--HEVYENKTD--------VILILELVAGGELFD----F 104
Query: 150 QTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDF 209
             +KE  +  +  +   QI  G+ ++HSL+   AH D+KP NI++  R    P   ++DF
Sbjct: 105 LAEKESLTEEEATEFLKQILNGVYYLHSLQ--IAHFDLKPENIMLLDRNVPKPRIKIIDF 162
Query: 210 GSA 212
           G A
Sbjct: 163 GLA 165

>pdb|4AAA|A Chain A, Crystal Structure Of The Human Cdkl2 Kinase Domain Length = 331

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 67/139 (48%), Gaps = 22/139 (15%)
Query: 77  AMKKVLIQNNEQL--EMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLF 134
           A+KK L  +++++  ++   EI++     H NL+ LL+         ++  W    YL+F
Sbjct: 54  AIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLE------VCKKKKRW----YLVF 103
Query: 135 PVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILI 194
              +D T+LD  ++     ++     V +  +QI  G+   HS      H D+KP NIL+
Sbjct: 104 EF-VDHTILDDLELFPNGLDY---QVVQKYLFQIINGIGFCHSHN--IIHRDIKPENILV 157
Query: 195 TCRKGQPPLAILMDFGSAR 213
           +    Q  +  L DFG AR
Sbjct: 158 S----QSGVVKLCDFGFAR 172

>pdb|3VUH|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M3 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 69/138 (50%), Gaps = 17/138 (12%)
Query: 84  QNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLL 143
           QN    +    E+ +    +H+N++ LL+      K+ +E     + Y++  + +D  L 
Sbjct: 62  QNQTHAKRAYRELVLMKCVNHKNIIGLLN-VFTPQKSLEEF---QDVYIVMEL-MDANL- 115
Query: 144 DHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPL 203
             ++V+Q + +    S +L   YQ+  G+KH+HS      H D+KP NI++   K    L
Sbjct: 116 --SQVIQMELDHERMSYLL---YQMLCGIKHLHSAG--IIHRDLKPSNIVV---KSDATL 165
Query: 204 AILMDFGSARPAQSKFAL 221
            IL DFG AR A + F +
Sbjct: 166 KIL-DFGLARTAGTSFMM 182

>pdb|3BHY|A Chain A, Crystal Structure Of Human Death Associated Protein Kinase 3 (Dapk3) In Complex With A Beta-Carboline Ligand Length = 283

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 76/195 (38%), Gaps = 36/195 (18%)
Query: 25  ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ 84
           E+ Y +  +LG G FA V   ++  T    AA                   +  K+ L  
Sbjct: 4   EDHYEMGEELGSGQFAIVRKCRQKGTGKEYAAK------------------FIKKRRLSS 45
Query: 85  NNEQL--EMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTL 142
           +   +  E +  E+ +     H N++ L  H I   K +          L+  +   G L
Sbjct: 46  SRRGVSREEIEREVNILREIRHPNIITL--HDIFENKTD--------VVLILELVSGGEL 95
Query: 143 LDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPP 202
            D       +KE  +  +  Q   QI  G+ ++HS     AH D+KP NI++  +    P
Sbjct: 96  FD----FLAEKESLTEDEATQFLKQILDGVHYLHS--KRIAHFDLKPENIMLLDKNVPNP 149
Query: 203 LAILMDFGSARPAQS 217
              L+DFG A   ++
Sbjct: 150 RIKLIDFGIAHKIEA 164

>pdb|2YAK|A Chain A, Structure Of Death-Associated Protein Kinase 1 (Dapk1) In Complex With A Ruthenium Octasporine Ligand (Osv) Length = 285

Iteration: 1
 Score = 40.8 bits (94), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 16/123 (13%)
Query: 90  EMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVM 149
           E +  E+ +     H N++ L  H +   K +          L+  +   G L D     
Sbjct: 59  EDIEREVSILKEIQHPNVITL--HEVYENKTD--------VILILELVAGGELFD----F 104
Query: 150 QTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDF 209
             +KE  +  +  +   QI  G+ ++HSL+   AH D+KP NI++  R    P   ++DF
Sbjct: 105 LAEKESLTEEEATEFLKQILNGVYYLHSLQ--IAHFDLKPENIMLLDRNVPKPRIKIIDF 162
Query: 210 GSA 212
           G A
Sbjct: 163 GLA 165

>pdb|2W4K|A Chain A, X-Ray Structure Of A Dap-Kinase 2-302 Length = 302

Iteration: 1
 Score = 40.8 bits (94), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 16/123 (13%)
Query: 90  EMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVM 149
           E +  E+ +     H N++ L  H +   K +          L+  +   G L D     
Sbjct: 59  EDIEREVSILKEIQHPNVITL--HEVYENKTD--------VILILELVAGGELFD----F 104
Query: 150 QTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDF 209
             +KE  +  +  +   QI  G+ ++HSL+   AH D+KP NI++  R    P   ++DF
Sbjct: 105 LAEKESLTEEEATEFLKQILNGVYYLHSLQ--IAHFDLKPENIMLLDRNVPKPRIKIIDF 162
Query: 210 GSA 212
           G A
Sbjct: 163 GLA 165

>pdb|1WVW|A Chain A, Crystal Structures Of Kinase Domain Of Dap Kinase In Complex With Small Molecular Inhibitors Length = 278

Iteration: 1
 Score = 40.4 bits (93), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 16/123 (13%)
Query: 90  EMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVM 149
           E +  E+ +     H N++ L  H +   K +          L+  +   G L D     
Sbjct: 59  EDIEREVSILKEIQHPNVITL--HEVYENKTD--------VILILELVAGGELFD----F 104
Query: 150 QTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDF 209
             +KE  +  +  +   QI  G+ ++HSL+   AH D+KP NI++  R    P   ++DF
Sbjct: 105 LAEKESLTEEEATEFLKQILNGVYYLHSLQ--IAHFDLKPENIMLLDRNVPKPRIKIIDF 162
Query: 210 GSA 212
           G A
Sbjct: 163 GLA 165

>pdb|1P4F|A Chain A, Death Associated Protein Kinase Catalytic Domain With Bound Inhibitor Fragment Length = 293

Iteration: 1
 Score = 40.4 bits (93), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 16/123 (13%)
Query: 90  EMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVM 149
           E +  E+ +     H N++ L  H +   K +          L+  +   G L D     
Sbjct: 58  EDIEREVSILKEIQHPNVITL--HEVYENKTD--------VILILELVAGGELFD----F 103
Query: 150 QTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDF 209
             +KE  +  +  +   QI  G+ ++HSL+   AH D+KP NI++  R    P   ++DF
Sbjct: 104 LAEKESLTEEEATEFLKQILNGVYYLHSLQ--IAHFDLKPENIMLLDRNVPKPRIKIIDF 161
Query: 210 GSA 212
           G A
Sbjct: 162 GLA 164

>pdb|3GU4|A Chain A, Crystal Structure Of Dapkq23v-Amppnp Length = 295

Iteration: 1
 Score = 40.4 bits (93), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 16/123 (13%)
Query: 90  EMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVM 149
           E +  E+ +     H N++ L  H +   K +          L+  +   G L D     
Sbjct: 59  EDIEREVSILKEIQHPNVITL--HEVYENKTD--------VILILELVAGGELFD----F 104
Query: 150 QTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDF 209
             +KE  +  +  +   QI  G+ ++HSL+   AH D+KP NI++  R    P   ++DF
Sbjct: 105 LAEKESLTEEEATEFLKQILNGVYYLHSLQ--IAHFDLKPENIMLLDRNVPKPRIKIIDF 162
Query: 210 GSA 212
           G A
Sbjct: 163 GLA 165

>pdb|2W4J|A Chain A, X-Ray Structure Of A Dap-Kinase 2-277 Length = 277

Iteration: 1
 Score = 40.4 bits (93), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 16/123 (13%)
Query: 90  EMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVM 149
           E +  E+ +     H N++ L  H +   K +          L+  +   G L D     
Sbjct: 59  EDIEREVSILKEIQHPNVITL--HEVYENKTD--------VILILELVAGGELFD----F 104
Query: 150 QTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDF 209
             +KE  +  +  +   QI  G+ ++HSL+   AH D+KP NI++  R    P   ++DF
Sbjct: 105 LAEKESLTEEEATEFLKQILNGVYYLHSLQ--IAHFDLKPENIMLLDRNVPKPRIKIIDF 162
Query: 210 GSA 212
           G A
Sbjct: 163 GLA 165

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	262
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	2e-60
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	1e-49
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	5e-22
2a19_B	284	Interferon-induced, double-stranded RNA-activated	1e-20
4apc_A	350	Serine/threonine-protein kinase NEK1; transferase;	1e-20
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	1e-20
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	2e-20
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	7e-20
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	1e-19
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	1e-19
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	9e-19
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	1e-18
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	1e-17
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	3e-17
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	3e-17
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	5e-17
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	7e-17
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	8e-17
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	1e-16
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	2e-16
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	3e-16
3bhy_A	283	Death-associated protein kinase 3; death associate	4e-16
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	1e-15
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	1e-15
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	2e-15
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	2e-15
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	2e-15
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	2e-15
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	2e-15
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	3e-15
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	3e-15
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	3e-15
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	4e-15
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	4e-15
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	5e-15
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	5e-15
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	5e-15
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	5e-15
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	6e-15
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	7e-15
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	8e-15
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	1e-14
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	2e-14
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	3e-14
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	3e-14
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	4e-14
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	7e-14
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	7e-14
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	7e-14
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	9e-14
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	1e-13
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	1e-13
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	2e-13
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	2e-13
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	2e-13
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	2e-13
3o0g_A	292	Cell division protein kinase 5; kinase activator c	2e-13
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	3e-13
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	4e-13
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	4e-13
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	6e-13
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	6e-13
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	6e-13
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	8e-13
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	9e-13
3niz_A	311	Rhodanese family protein; structural genomics, str	9e-13
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	1e-12
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	1e-12
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	1e-12
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	2e-12
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	2e-12
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	2e-12
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	2e-12
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	3e-12
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	3e-12
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	3e-12
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	4e-12
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	5e-12
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	5e-12
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	6e-12
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	7e-12
3rp9_A	458	Mitogen-activated protein kinase; structural genom	7e-12
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	9e-12
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	1e-11
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	1e-11
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	2e-11
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	2e-11
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	2e-11
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	3e-11
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	4e-11
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	6e-11
3ork_A	311	Serine/threonine protein kinase; structural genomi	6e-11
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	1e-10
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	1e-10
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	2e-10
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	3e-10
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	4e-10
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	5e-10
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	6e-10
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	8e-10
3uqc_A	286	Probable conserved transmembrane protein; structur	9e-10
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	2e-09
3soc_A	322	Activin receptor type-2A; structural genomics cons	2e-09
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	2e-09
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	2e-09
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	4e-09
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	6e-09
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	6e-09
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	6e-09
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	7e-09
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	7e-09
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	7e-09
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	8e-09
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	1e-08
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	2e-08
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	2e-08
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	4e-08
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	4e-08
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	6e-08
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	7e-08
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	8e-08
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	8e-08
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	1e-07
3q4u_A	301	Activin receptor type-1; structural genomics conso	1e-07
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	1e-07
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	1e-07
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	2e-07
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	2e-07
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	2e-07
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	2e-07
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	2e-07
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	2e-07
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	2e-07
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	2e-07
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	4e-07
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	4e-07
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	5e-07
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	6e-07
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	6e-07
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	6e-07
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	7e-07
1uu3_A	310	HPDK1, 3-phosphoinositide dependent protein kinase	8e-07
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	1e-06
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	2e-06
2dyl_A	318	Dual specificity mitogen-activated protein kinase	2e-06
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	2e-06
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	2e-06
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	2e-06
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	2e-06
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	2e-06
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	2e-06
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	3e-06
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	3e-06
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	3e-06
3fme_A	290	Dual specificity mitogen-activated protein kinase;	3e-06
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	5e-06
3aln_A	327	Dual specificity mitogen-activated protein kinase;	5e-06
3an0_A	340	Dual specificity mitogen-activated protein kinase;	6e-06
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	9e-06
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	1e-05
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	3e-05
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	3e-05
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	4e-05
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	5e-05
3pvu_A	695	Beta-adrenergic receptor kinase 1; transferase, se	6e-05
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	9e-05
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	3e-04
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	5e-04
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	6e-04
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	8e-04
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	9e-04

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} Length = 317

 Score =  192 bits (490), Expect = 2e-60
 Identities = 69/220 (31%), Positives = 104/220 (47%), Gaps = 37/220 (16%)

Query: 6   SGLNALYDSVNGGGDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVK 65
           SG   LY     G  V I+   Y  +++LGEGGF+YV LV+                   
Sbjct: 12  SGRENLYFQ---GHMVIIDNKHYLFIQKLGEGGFSYVDLVE------------------- 49

Query: 66  DPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGS 125
               L D   YA+K++L    +  E  + E  +  LF+H N+L L+ + +      +E  
Sbjct: 50  ---GLHDGHFYALKRILCHEQQDREEAQREADMHRLFNHPNILRLVAYCL------RERG 100

Query: 126 WKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHN 185
            KHEA+LL P    GTL +  + ++ K  F +   +L +   IC GL+ +H+    YAH 
Sbjct: 101 AKHEAWLLLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAIHA--KGYAHR 158

Query: 186 DVKPGNILITCRKGQPPLAILMDFGSARPAQSKFALGQRR 225
           D+KP NIL+   +GQP   +LMD GS   A       ++ 
Sbjct: 159 DLKPTNILLG-DEGQP---VLMDLGSMNQACIHVEGSRQA 194

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens} Length = 337

 Score =  165 bits (420), Expect = 1e-49
 Identities = 57/205 (27%), Positives = 89/205 (43%), Gaps = 31/205 (15%)

Query: 18  GGDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYA 77
           G  V + E R R+ R L EGGFA+VY  +                       +     YA
Sbjct: 20  GQTVELGELRLRVRRVLAEGGFAFVYEAQ----------------------DVGSGREYA 57

Query: 78  MKKVLIQNNEQLEMVREEIRV-SSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPV 136
           +K++L    E+   + +E+     L  H N++     A I  + +  G  +   +LL   
Sbjct: 58  LKRLLSNEEEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKEESDTGQAE---FLLLTE 114

Query: 137 HLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITC 196
              G L++  K M+++    S   VL+IFYQ C  ++HMH  +PP  H D+K  N+L++ 
Sbjct: 115 LCKGQLVEFLKKMESRG-PLSCDTVLKIFYQTCRAVQHMHRQKPPIIHRDLKVENLLLS- 172

Query: 197 RKGQPPLAILMDFGSARPAQSKFAL 221
            +G      L DFGSA         
Sbjct: 173 NQGTI---KLCDFGSATTISHYPDY 194

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* Length = 279

 Score = 91.2 bits (227), Expect = 5e-22
 Identities = 34/209 (16%), Positives = 64/209 (30%), Gaps = 51/209 (24%)

Query: 26  NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLI-- 83
             Y +L  +G G +     ++                        SD      K++    
Sbjct: 6   EDYEVLYTIGTGSYGRCQKIR----------------------RKSDGKILVWKELDYGS 43

Query: 84  QNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHL----- 138
               + +M+  E+ +     H N++   D   I  + N              +++     
Sbjct: 44  MTEAEKQMLVSEVNLLRELKHPNIVRYYDR--IIDRTNTT------------LYIVMEYC 89

Query: 139 -DGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYA---HNDVKPGNILI 194
             G L         ++++     VL++  Q+   LK  H          H D+KP N+ +
Sbjct: 90  EGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFL 149

Query: 195 TCRKGQPPLAILMDFGSARPAQSKFALGQ 223
              K    L    DFG AR      +  +
Sbjct: 150 D-GKQNVKLG---DFGLARILNHDTSFAK 174

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* Length = 284

 Score = 87.7 bits (218), Expect = 1e-20
 Identities = 38/194 (19%), Positives = 66/194 (34%), Gaps = 40/194 (20%)

Query: 26  NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN 85
             ++ +  +G GGF  V+  K                      H  D  TY +K+V   N
Sbjct: 11  MDFKEIELIGSGGFGQVFKAK----------------------HRIDGKTYVIKRVKYNN 48

Query: 86  NEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHL------D 139
               E    E++  +   H N++             +  S          + +       
Sbjct: 49  ----EKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSSKNSSRSKTKCLFIQMEFCDK 104

Query: 140 GTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKG 199
           GTL    +  + + E       L++F QI  G+ ++HS +    + D+KP NI +     
Sbjct: 105 GTLEQWIE--KRRGEKLDKVLALELFEQITKGVDYIHSKK--LINRDLKPSNIFLV-DTK 159

Query: 200 QPPLAILMDFGSAR 213
           Q  +    DFG   
Sbjct: 160 QVKIG---DFGLVT 170

>4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo sapiens} Length = 350

 Score = 88.6 bits (220), Expect = 1e-20
 Identities = 51/204 (25%), Positives = 79/204 (38%), Gaps = 50/204 (24%)

Query: 26  NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLI-- 83
            +Y  L+++GEG F    LVK                         D   Y +K++ I  
Sbjct: 24  EKYVRLQKIGEGSFGKAILVK----------------------STEDGRQYVIKEINISR 61

Query: 84  QNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLD---- 139
            ++++ E  R E+ V +   H N        I+  +     S++    L   + +D    
Sbjct: 62  MSSKEREESRREVAVLANMKHPN--------IVQYR----ESFEENGSLY--IVMDYCEG 107

Query: 140 GTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKG 199
           G L    ++   K   F    +L  F QIC  LKH+H  +    H D+K  NI +T + G
Sbjct: 108 GDL--FKRINAQKGVLFQEDQILDWFVQICLALKHVHDRK--ILHRDIKSQNIFLT-KDG 162

Query: 200 QPPLAILMDFGSARPAQSKFALGQ 223
              L    DFG AR   S   L +
Sbjct: 163 TVQLG---DFGIARVLNSTVELAR 183

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* Length = 310

 Score = 88.1 bits (219), Expect = 1e-20
 Identities = 49/206 (23%), Positives = 74/206 (35%), Gaps = 55/206 (26%)

Query: 26  NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN 85
             +RI +++G G F+ VY                          L D    A+KKV I +
Sbjct: 32  ANFRIEKKIGRGQFSEVYRAA----------------------CLLDGVPVALKKVQIFD 69

Query: 86  ---NEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLD--- 139
               +      +EI +    +H N        +I        S+  +  L   + L+   
Sbjct: 70  LMDAKARADCIKEIDLLKQLNHPN--------VIKYY----ASFIEDNELN--IVLELAD 115

Query: 140 -GTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHS---LEPPYAHNDVKPGNILIT 195
            G L    K  + +K       V + F Q+C+ L+HMHS   +     H D+KP N+ IT
Sbjct: 116 AGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALEHMHSRRVM-----HRDIKPANVFIT 170

Query: 196 CRKGQPPLAILMDFGSARPAQSKFAL 221
              G   L    D G  R   SK   
Sbjct: 171 -ATGVVKLG---DLGLGRFFSSKTTA 192

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} Length = 311

 Score = 87.4 bits (217), Expect = 2e-20
 Identities = 34/194 (17%), Positives = 57/194 (29%), Gaps = 49/194 (25%)

Query: 25  ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKV--- 81
           +  ++ L +LG G +  V+ V+                         D   YA+K+    
Sbjct: 56  QQSFQRLSRLGHGSYGEVFKVR----------------------SKEDGRLYAVKRSMSP 93

Query: 82  LIQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPV--HLD 139
                ++   + E      +  H   + L              +W+    L         
Sbjct: 94  FRGPKDRARKLAEVGSHEKVGQHPCCVRLEQ------------AWEEGGILYL-QTELCG 140

Query: 140 GTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKG 199
            +L  H    +        + V          L H+HS      H DVKP NI +   +G
Sbjct: 141 PSLQQH---CEAWGASLPEAQVWGYLRDTLLALAHLHSQG--LVHLDVKPANIFLG-PRG 194

Query: 200 QPPLAILMDFGSAR 213
           +  L    DFG   
Sbjct: 195 RCKLG---DFGLLV 205

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A Length = 303

 Score = 85.8 bits (213), Expect = 7e-20
 Identities = 37/191 (19%), Positives = 71/191 (37%), Gaps = 35/191 (18%)

Query: 26  NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN 85
           + +  +  LG+G F  V   +                      +  D   YA+KK+    
Sbjct: 6   SDFEEIAVLGQGAFGQVVKAR----------------------NALDSRYYAIKKIR-HT 42

Query: 86  NEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPV--HLD-GTL 142
            E+L  +  E+ + +  +H+ ++      +      +  +   +   LF    + + GTL
Sbjct: 43  EEKLSTILSEVMLLASLNHQYVVRYYAAWLERRNFVKPMTAVKKKSTLFIQMEYCENGTL 102

Query: 143 LDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPP 202
            D    + ++       +  ++F QI   L ++HS      H D+KP NI I        
Sbjct: 103 YDL---IHSENLNQQRDEYWRLFRQILEALSYIHSQG--IIHRDLKPMNIFID-ESRNVK 156

Query: 203 LAILMDFGSAR 213
           +    DFG A+
Sbjct: 157 IG---DFGLAK 164

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* Length = 299

 Score = 85.5 bits (212), Expect = 1e-19
 Identities = 41/195 (21%), Positives = 67/195 (34%), Gaps = 40/195 (20%)

Query: 26  NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN 85
             +  ++ LG GGF  V+  K                      +  DD  YA+K++ + N
Sbjct: 5   TDFEPIQCLGRGGFGVVFEAK----------------------NKVDDCNYAIKRIRLPN 42

Query: 86  NE-QLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHL------ 138
            E   E V  E++  +   H  ++   +  +      +      + YL    ++      
Sbjct: 43  RELAREKVMREVKALAKLEHPGIVRYFNAWLEKNTTEKLQPSSPKVYL----YIQMQLCR 98

Query: 139 DGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRK 198
              L D     +   E    S  L IF QI   ++ +HS      H D+KP NI  T   
Sbjct: 99  KENLKDWMN-GRCTIEERERSVCLHIFLQIAEAVEFLHSKG--LMHRDLKPSNIFFT-MD 154

Query: 199 GQPPLAILMDFGSAR 213
               +    DFG   
Sbjct: 155 DVVKVG---DFGLVT 166

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens} Length = 365

 Score = 86.2 bits (213), Expect = 1e-19
 Identities = 32/202 (15%), Positives = 67/202 (33%), Gaps = 37/202 (18%)

Query: 20  DVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMK 79
           +  +      +   LGEG FA VY   +    DA                      + +K
Sbjct: 59  EFQLGSKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQ-----------------KFVLK 101

Query: 80  KVLIQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLD 139
                N  +  +  + +          L P + H  +   +     +++ + L+  ++  
Sbjct: 102 VQKPANPWEFYIGTQLMER--------LKPSMQHMFMKFYSAHL--FQNGSVLVGELYSY 151

Query: 140 GTLLDHA-KVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRK 198
           GTLL+       T ++      V+    ++   ++ +H  E    H D+KP N ++    
Sbjct: 152 GTLLNAINLYKNTPEKVMPQGLVISFAMRMLYMIEQVHDCE--IIHGDIKPDNFILGNGF 209

Query: 199 GQPPLAI-------LMDFGSAR 213
            +            L+D G + 
Sbjct: 210 LEQDDEDDLSAGLALIDLGQSI 231

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 84.1 bits (208), Expect = 9e-19
 Identities = 49/189 (25%), Positives = 76/189 (40%), Gaps = 39/189 (20%)

Query: 25  ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ 84
            + Y I  +LG G F  V+ V E  T +                       +A K V+  
Sbjct: 156 LDHYDIHEELGTGAFGVVHRVTERATGN----------------------NFAAKFVMTP 193

Query: 85  NNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLD 144
           +    E VR+EI+  S+  H  L+ L D       A ++    +E  +++     G L +
Sbjct: 194 HESDKETVRKEIQTMSVLRHPTLVNLHD-------AFED---DNEMVMIYEFMSGGELFE 243

Query: 145 HAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLA 204
             KV   +    S  + ++   Q+C GL HMH     Y H D+KP NI+ T ++      
Sbjct: 244 --KVA-DEHNKMSEDEAVEYMRQVCKGLCHMHENN--YVHLDLKPENIMFTTKRSNELKL 298

Query: 205 ILMDFGSAR 213
           I  DFG   
Sbjct: 299 I--DFGLTA 305

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A* Length = 289

 Score = 82.0 bits (203), Expect = 1e-18
 Identities = 34/203 (16%), Positives = 67/203 (33%), Gaps = 41/203 (20%)

Query: 25  ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ 84
              +  L ++G G F  V+                            D   YA+K+    
Sbjct: 10  TTEFHELEKIGSGEFGSVFKCV----------------------KRLDGCIYAIKRSKKP 47

Query: 85  N---NEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHL--D 139
                ++   +RE    + L  H +        ++        +W  + ++L        
Sbjct: 48  LAGSVDEQNALREVYAHAVLGQHSH--------VVRYF----SAWAEDDHMLIQNEYCNG 95

Query: 140 GTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKG 199
           G+L D          +F  +++  +  Q+  GL+++HS+     H D+KP NI I+    
Sbjct: 96  GSLADAISENYRIMSYFKEAELKDLLLQVGRGLRYIHSMS--LVHMDIKPSNIFISRTSI 153

Query: 200 QPPLAILMDFGSARPAQSKFALG 222
               +   D       +  F +G
Sbjct: 154 PNAASEEGDEDDWASNKVMFKIG 176

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* Length = 351

 Score = 80.4 bits (199), Expect = 1e-17
 Identities = 54/217 (24%), Positives = 86/217 (39%), Gaps = 58/217 (26%)

Query: 26  NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN 85
           ++Y  L ++G+G F  V+  +   T                          A+KKVL   
Sbjct: 17  SKYEKLAKIGQGTFGEVFKARHRKTGQ----------------------KVALKKVL--- 51

Query: 86  NEQLEMVRE--------EIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVH 137
              +E  +E        EI++  L  H N++ L++  I   KA+     K   YL+F   
Sbjct: 52  ---MENEKEGFPITALREIKILQLLKHENVVNLIE--ICRTKASPYNRCKGSIYLVFD-- 104

Query: 138 LDGTLLDH--AKVMQTKKEFFSTSDVLQIFYQICAGLKHMHS---LEPPYAHNDVKPGNI 192
                 +H  A ++      F+ S++ ++   +  GL ++H    L     H D+K  N+
Sbjct: 105 ----FCEHDLAGLLSNVLVKFTLSEIKRVMQMLLNGLYYIHRNKIL-----HRDMKAANV 155

Query: 193 LITCRKGQPPLAILMDFGSARPAQSKFALGQRRYSCR 229
           LIT R G   LA   DFG AR           RY+ R
Sbjct: 156 LIT-RDGVLKLA---DFGLARAFSLAKNSQPNRYTNR 188

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7 Length = 387

 Score = 79.4 bits (196), Expect = 3e-17
 Identities = 47/189 (24%), Positives = 68/189 (35%), Gaps = 39/189 (20%)

Query: 25  ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ 84
            + Y IL +LG G F  V+   E  T                         +  K +   
Sbjct: 50  YDYYDILEELGSGAFGVVHRCVEKATGR----------------------VFVAKFINTP 87

Query: 85  NNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLD 144
                  V+ EI + +   H  L+ L D       A ++   K+E  L+      G L D
Sbjct: 88  YPLDKYTVKNEISIMNQLHHPKLINLHD-------AFED---KYEMVLILEFLSGGELFD 137

Query: 145 HAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLA 204
               +  +    S ++V+    Q C GLKHMH       H D+KP NI+   +K      
Sbjct: 138 R---IAAEDYKMSEAEVINYMRQACEGLKHMHEHS--IVHLDIKPENIMCETKKASSVKI 192

Query: 205 ILMDFGSAR 213
           I  DFG A 
Sbjct: 193 I--DFGLAT 199

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis} Length = 394

 Score = 79.3 bits (196), Expect = 3e-17
 Identities = 41/199 (20%), Positives = 75/199 (37%), Gaps = 37/199 (18%)

Query: 15  VNGGGDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDG 74
            + G      E  Y   + +G G F  V+  K   +           ++V          
Sbjct: 29  ASDGKTGEQREIAYTNCKVIGNGSFGVVFQAKLVES-----------DEV---------- 67

Query: 75  TYAMKKVLIQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLF 134
             A+KKVL     +    R E+++  +  H N++ L         +N +   +    L+ 
Sbjct: 68  --AIKKVLQDKRFKN---R-ELQIMRIVKHPNVVDLKA----FFYSNGDKKDEVFLNLVL 117

Query: 135 PVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILI 194
             ++  T+   ++     K+      +    YQ+   L ++HS+     H D+KP N+L+
Sbjct: 118 E-YVPETVYRASRHYAKLKQTMPMLLIKLYMYQLLRSLAYIHSIG--ICHRDIKPQNLLL 174

Query: 195 TCRKGQPPLAILMDFGSAR 213
               G   L    DFGSA+
Sbjct: 175 DPPSGVLKLI---DFGSAK 190

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* Length = 371

 Score = 78.6 bits (193), Expect = 5e-17
 Identities = 25/215 (11%), Positives = 55/215 (25%), Gaps = 51/215 (23%)

Query: 27  RYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMK---KVLI 83
           + +++  L  G  + V+LV++                            +A+K       
Sbjct: 63  KLKLVEPLRVGDRSVVFLVRDVER----------------------LEDFALKVFTMGAE 100

Query: 84  QNNEQLEMVREEIRVSSLFSHRNLLPLLDHA----------------IIAVKANQEGSWK 127
            +  +LE + E    ++     +     D                     +   Q+    
Sbjct: 101 NSRSELERLHEATFAAARLLGESPEEARDRRRLLLPSDAVAVQSQPPFAQLSPGQDDYAV 160

Query: 128 HEAYLLFPVHLDGTLLDHAKVMQ---TKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAH 184
               LL P      L      +      +       +  +  Q+     ++ S      H
Sbjct: 161 ANYLLLMPA-ASVDLELLFSTLDFVYVFRGDEGILALHILTAQLIRLAANLQSKG--LVH 217

Query: 185 NDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF 219
               P N+ I    G+  L    D  +     ++ 
Sbjct: 218 GHFTPDNLFIM-PDGRLMLG---DVSALWKVGTRG 248

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens} Length = 319

 Score = 77.9 bits (192), Expect = 7e-17
 Identities = 36/192 (18%), Positives = 68/192 (35%), Gaps = 34/192 (17%)

Query: 23  INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKV- 81
            + + + +   LG+G  A V+  +   T D                       +A+K   
Sbjct: 6   TSNHLWLLSDILGQGATANVFRGRHKKTGD----------------------LFAIKVFN 43

Query: 82  LIQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGT 141
            I     +++   E  V    +H+N        I+ + A +E +      L+      G+
Sbjct: 44  NISFLRPVDVQMREFEVLKKLNHKN--------IVKLFAIEEETTTRHKVLIMEFCPCGS 95

Query: 142 LLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQP 201
           L        +       S+ L +   +  G+ H+        H ++KPGNI+    +   
Sbjct: 96  LYTVL-EEPSNAYGLPESEFLIVLRDVVGGMNHLRENG--IVHRNIKPGNIMRVIGEDGQ 152

Query: 202 PLAILMDFGSAR 213
            +  L DFG+AR
Sbjct: 153 SVYKLTDFGAAR 164

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A* Length = 361

 Score = 77.8 bits (192), Expect = 8e-17
 Identities = 44/189 (23%), Positives = 70/189 (37%), Gaps = 32/189 (16%)

Query: 25  ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ 84
           E+ Y I  +LG G FA V   +E  T    AA      K               +     
Sbjct: 11  EDFYDIGEELGSGQFAIVKKCREKSTGLEYAA------KFIKKRQSRASRRGVCR----- 59

Query: 85  NNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLD 144
                E +  E+ +     H N++ L D         +    + +  L+  +   G L D
Sbjct: 60  -----EEIEREVSILRQVLHPNIITLHD-------VYEN---RTDVVLILELVSGGELFD 104

Query: 145 HAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLA 204
                  +KE  S  +      QI  G+ ++H+ +   AH D+KP NI++  +    P  
Sbjct: 105 FL----AQKESLSEEEATSFIKQILDGVNYLHTKK--IAHFDLKPENIMLLDKNIPIPHI 158

Query: 205 ILMDFGSAR 213
            L+DFG A 
Sbjct: 159 KLIDFGLAH 167

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A Length = 321

 Score = 76.9 bits (190), Expect = 1e-16
 Identities = 44/189 (23%), Positives = 70/189 (37%), Gaps = 32/189 (16%)

Query: 25  ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ 84
           E+ Y I  +LG G FA V   +E  T    AA      K               +     
Sbjct: 11  EDFYDIGEELGSGQFAIVKKCREKSTGLEYAA------KFIKKRQSRASRRGVSR----- 59

Query: 85  NNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLD 144
                E +  E+ +     H N++ L D         +    + +  L+  +   G L D
Sbjct: 60  -----EEIEREVSILRQVLHHNVITLHD-------VYEN---RTDVVLILELVSGGELFD 104

Query: 145 HAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLA 204
                  +KE  S  +      QI  G+ ++H+ +   AH D+KP NI++  +    P  
Sbjct: 105 FL----AQKESLSEEEATSFIKQILDGVNYLHTKK--IAHFDLKPENIMLLDKNIPIPHI 158

Query: 205 ILMDFGSAR 213
            L+DFG A 
Sbjct: 159 KLIDFGLAH 167

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens} Length = 396

 Score = 77.2 bits (190), Expect = 2e-16
 Identities = 36/192 (18%), Positives = 68/192 (35%), Gaps = 34/192 (17%)

Query: 23  INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKV- 81
            + + + +   LG+G  A V+  +   T D                       +A+K   
Sbjct: 6   TSNHLWLLSDILGQGATANVFRGRHKKTGD----------------------LFAIKVFN 43

Query: 82  LIQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGT 141
            I     +++   E  V    +H+N        I+ + A +E +      L+      G+
Sbjct: 44  NISFLRPVDVQMREFEVLKKLNHKN--------IVKLFAIEEETTTRHKVLIMEFCPCGS 95

Query: 142 LLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQP 201
           L        +       S+ L +   +  G+ H+        H ++KPGNI+    +   
Sbjct: 96  LYTVL-EEPSNAYGLPESEFLIVLRDVVGGMNHLRENG--IVHRNIKPGNIMRVIGEDGQ 152

Query: 202 PLAILMDFGSAR 213
            +  L DFG+AR
Sbjct: 153 SVYKLTDFGAAR 164

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 413

 Score = 77.0 bits (189), Expect = 3e-16
 Identities = 31/206 (15%), Positives = 66/206 (32%), Gaps = 29/206 (14%)

Query: 27  RYRIL---RQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLI 83
           R R L     LG+          +  T ++          V  P + ++       K + 
Sbjct: 76  RPRTLVRGTVLGQEDPYAYLEATDQETGESFE--------VHVP-YFTERPPSNAIKQMK 126

Query: 84  QNNEQLEMVREEIRVSSLFSHRNLLPLLDH-------AIIAVKANQEGSWKHEAYLLFPV 136
           +   +L ++R          H   +   D         +I V+ ++   W    + L+P 
Sbjct: 127 EEVLRLRLLRGIKNQKQAKVHLRFIFPFDLVKDPQKKKMIRVRLDERDMWVLSRFFLYPR 186

Query: 137 HLDGTLLDHAKVMQTKK---EFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNIL 193
            +   L    +V+ +     +       LQ+  Q+   L  +H       H  ++P +I+
Sbjct: 187 -MQSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHYG--LVHTYLRPVDIV 243

Query: 194 ITCRKGQPPLAILMDFGSARPAQSKF 219
           +  ++G      L  F       +  
Sbjct: 244 LD-QRGG---VFLTGFEHLVRDGASA 265

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ... Length = 283

 Score = 74.9 bits (185), Expect = 4e-16
 Identities = 46/189 (24%), Positives = 72/189 (38%), Gaps = 32/189 (16%)

Query: 25  ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ 84
           E+ Y +  +LG G FA V   ++  T    AA      K      LS       +     
Sbjct: 4   EDHYEMGEELGSGQFAIVRKCRQKGTGKEYAA------KFIKKRRLSSSRRGVSR----- 52

Query: 85  NNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLD 144
                E +  E+ +     H N++ L D         +    K +  L+  +   G L D
Sbjct: 53  -----EEIEREVNILREIRHPNIITLHD-------IFEN---KTDVVLILELVSGGELFD 97

Query: 145 HAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLA 204
                  +KE  +  +  Q   QI  G+ ++HS     AH D+KP NI++  +    P  
Sbjct: 98  FL----AEKESLTEDEATQFLKQILDGVHYLHSKR--IAHFDLKPENIMLLDKNVPNPRI 151

Query: 205 ILMDFGSAR 213
            L+DFG A 
Sbjct: 152 KLIDFGIAH 160

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A* Length = 484

 Score = 75.1 bits (185), Expect = 1e-15
 Identities = 44/192 (22%), Positives = 73/192 (38%), Gaps = 42/192 (21%)

Query: 25  ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMK---KV 81
            +RY+  R LG+G F  V L K                              A+K   K 
Sbjct: 25  SDRYKGQRVLGKGSFGEVILCK----------------------DKITGQECAVKVISKR 62

Query: 82  LIQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGT 141
            ++     E +  E+++     H N        I+ +    E   K   YL+  V+  G 
Sbjct: 63  QVKQKTDKESLLREVQLLKQLDHPN--------IMKLYEFFED--KGYFYLVGEVYTGGE 112

Query: 142 LLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQP 201
           L D        ++ FS  D  +I  Q+ +G+ +MH  +    H D+KP N+L+  +    
Sbjct: 113 LFDEII----SRKRFSEVDAARIIRQVLSGITYMHKNK--IVHRDLKPENLLLESKSKDA 166

Query: 202 PLAILMDFGSAR 213
            + I +DFG + 
Sbjct: 167 NIRI-IDFGLST 177

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ... Length = 420

 Score = 74.7 bits (184), Expect = 1e-15
 Identities = 44/200 (22%), Positives = 72/200 (36%), Gaps = 36/200 (18%)

Query: 14  SVNGGGDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDD 73
           +  G G     E  Y   + +G G F  VY  K   + +           V         
Sbjct: 42  ATPGQGPDRPQEVSYTDTKVIGNGSFGVVYQAKLCDSGE----------LV--------- 82

Query: 74  GTYAMKKVLIQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLL 133
              A+KKVL     +    RE +++     H N++ L         ++ E   +    L+
Sbjct: 83  ---AIKKVLQDKRFKN---RE-LQIMRKLDHCNIVRLRY----FFYSSGEKKDEVYLNLV 131

Query: 134 FPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNIL 193
              ++  T+   A+     K+      V    YQ+   L ++HS      H D+KP N+L
Sbjct: 132 LD-YVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFG--ICHRDIKPQNLL 188

Query: 194 ITCRKGQPPLAILMDFGSAR 213
           +        L    DFGSA+
Sbjct: 189 LDPDTAVLKLC---DFGSAK 205

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens} Length = 432

 Score = 74.4 bits (183), Expect = 2e-15
 Identities = 46/234 (19%), Positives = 83/234 (35%), Gaps = 50/234 (21%)

Query: 1   MGCSLSGLNALYDSVNGGGDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGL 60
           MG S S      D         + +  +     LG G    +                  
Sbjct: 1   MGSSPSLEQDDGDEETSVVI--VGKISFCPKDVLGHGAEGTIVYR--------------- 43

Query: 61  ANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRV-SSLFSHRNLLPLLDHAIIAVK 119
                    + D+   A+K++L    E       E+++      H N        +I   
Sbjct: 44  --------GMFDNRDVAVKRILP---ECFSFADREVQLLRESDEHPN--------VIRYF 84

Query: 120 ANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLE 179
             ++   +   Y+   +    TL +    ++ K       + + +  Q  +GL H+HSL 
Sbjct: 85  CTEKD--RQFQYIAIEL-CAATLQE---YVEQKDFAHLGLEPITLLQQTTSGLAHLHSLN 138

Query: 180 PPYAHNDVKPGNILITCRKGQPPL-AILMDFGSARPAQSKFALGQRRYSCRNGL 232
               H D+KP NILI+       + A++ DFG  +    K A+G+  +S R+G+
Sbjct: 139 --IVHRDLKPHNILISMPNAHGKIKAMISDFGLCK----KLAVGRHSFSRRSGV 186

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens} Length = 278

 Score = 73.3 bits (181), Expect = 2e-15
 Identities = 38/205 (18%), Positives = 78/205 (38%), Gaps = 44/205 (21%)

Query: 26  NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN 85
             +++   LG+G FA VY  +   T    A       K+             + K  +  
Sbjct: 11  EDFKVGNLLGKGSFAGVYRAESIHTGLEVAI------KM-------------IDKKAMYK 51

Query: 86  NEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDH 145
              ++ V+ E+++     H ++L L  +                 YL+  +  +G +  +
Sbjct: 52  AGMVQRVQNEVKIHCQLKHPSILEL--YNYFEDSNY--------VYLVLEMCHNGEMNRY 101

Query: 146 AKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAI 205
              ++ + + FS ++     +QI  G+ ++HS      H D+   N+L+T R     +A 
Sbjct: 102 ---LKNRVKPFSENEARHFMHQIITGMLYLHSHG--ILHRDLTLSNLLLT-RNMNIKIA- 154

Query: 206 LMDFG-SARPAQSKFALGQRRY-SC 228
             DFG + +         ++ Y  C
Sbjct: 155 --DFGLATQLKMP----HEKHYTLC 173

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7 Length = 321

 Score = 73.4 bits (181), Expect = 2e-15
 Identities = 41/189 (21%), Positives = 75/189 (39%), Gaps = 40/189 (21%)

Query: 25  ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ 84
             +Y I   LG G F  V+   ET +                        TY  K V ++
Sbjct: 4   YEKYMIAEDLGRGEFGIVHRCVETSSKK----------------------TYMAKFVKVK 41

Query: 85  NNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLD 144
             +Q  +V++EI + ++  HRN+L L +       + +      E  ++F       + +
Sbjct: 42  GTDQ-VLVKKEISILNIARHRNILHLHE-------SFES---MEELVMIFEFISGLDIFE 90

Query: 145 HAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLA 204
               + T     +  +++   +Q+C  L+ +HS      H D++P NI+   R+      
Sbjct: 91  R---INTSAFELNEREIVSYVHQVCEALQFLHSHN--IGHFDIRPENIIYQTRRSSTIKI 145

Query: 205 ILMDFGSAR 213
           I  +FG AR
Sbjct: 146 I--EFGQAR 152

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A* Length = 294

 Score = 73.0 bits (180), Expect = 2e-15
 Identities = 38/207 (18%), Positives = 75/207 (36%), Gaps = 51/207 (24%)

Query: 27  RYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMK---KVLI 83
           RY   R LG+GGFA  + + +  T +                       +A K   K L+
Sbjct: 16  RYVRGRFLGKGGFAKCFEISDADTKE----------------------VFAGKIVPKSLL 53

Query: 84  QNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLL 143
               Q E +  EI +    +H++++    H                 +++  +    +LL
Sbjct: 54  LKPHQREKMSMEISIHRSLAHQHVVGF--HGFFEDNDF--------VFVVLELCRRRSLL 103

Query: 144 DHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPL 203
           +  K    +++  +  +      QI  G +++H       H D+K GN+ +     +  +
Sbjct: 104 ELHK----RRKALTEPEARYYLRQIVLGCQYLHRNR--VIHRDLKLGNLFLN-EDLEVKI 156

Query: 204 AILMDFG-SARPAQSKFALGQRRY-SC 228
               DFG + +        G+R+   C
Sbjct: 157 G---DFGLATKVEYD----GERKKVLC 176

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus} Length = 332

 Score = 73.4 bits (180), Expect = 2e-15
 Identities = 38/236 (16%), Positives = 64/236 (27%), Gaps = 75/236 (31%)

Query: 25  ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKV-LI 83
              +  ++ +G GGF  V+  K                      +  DD  YA+K++ L 
Sbjct: 5   LTDFEPIQCMGRGGFGVVFEAK----------------------NKVDDCNYAIKRIRLP 42

Query: 84  QNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAV-----------------------KA 120
                 E V  E++  +   H  ++   +  +                            
Sbjct: 43  NRELAREKVMREVKALAKLEHPGIVRYFNAWLETPPEKWQEEMDEIWLKDESTDWPLSSP 102

Query: 121 NQEGSWKHEAYLLFPVHLDGTLLDHAK---------VMQ--------------TKKEFFS 157
           +   +   +   + P     T+               MQ                 E   
Sbjct: 103 SPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRCSLEDRE 162

Query: 158 TSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSAR 213
               L IF QI   ++ +HS      H D+KP NI  T       +    DFG   
Sbjct: 163 HGVCLHIFIQIAEAVEFLHSKG--LMHRDLKPSNIFFT-MDDVVKVG---DFGLVT 212

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens} Length = 326

 Score = 73.1 bits (180), Expect = 3e-15
 Identities = 43/189 (22%), Positives = 71/189 (37%), Gaps = 32/189 (16%)

Query: 25  ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ 84
           ++ Y    +LG G FA V   +E  T    AA      K               +     
Sbjct: 10  DDYYDTGEELGSGQFAVVKKCREKSTGLQYAA------KFIKKRRTKSSRRGVSR----- 58

Query: 85  NNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLD 144
                E +  E+ +     H N++ L +         +    K +  L+  +   G L D
Sbjct: 59  -----EDIEREVSILKEIQHPNVITLHE-------VYEN---KTDVILILELVAGGELFD 103

Query: 145 HAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLA 204
                  +KE  +  +  +   QI  G+ ++HSL+   AH D+KP NI++  R    P  
Sbjct: 104 FL----AEKESLTEEEATEFLKQILNGVYYLHSLQ--IAHFDLKPENIMLLDRNVPKPRI 157

Query: 205 ILMDFGSAR 213
            ++DFG A 
Sbjct: 158 KIIDFGLAH 166

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7 Length = 346

 Score = 73.4 bits (181), Expect = 3e-15
 Identities = 51/215 (23%), Positives = 83/215 (38%), Gaps = 63/215 (29%)

Query: 26  NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN 85
            RY  L  LGEG FA VY  ++  T           N++            A+KK+ + +
Sbjct: 10  KRYEKLDFLGEGQFATVYKARDKNT-----------NQI-----------VAIKKIKLGH 47

Query: 86  NEQLEM------VREEIRVSSL--FSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVH 137
             + +       +RE   +  L   SH N++ LLD      K+N          L+F   
Sbjct: 48  RSEAKDGINRTALRE---IKLLQELSHPNIIGLLD--AFGHKSN--------ISLVFD-F 93

Query: 138 LDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHS---LEPPYAHNDVKPGNILI 194
           ++    D   +++      + S +         GL+++H    L     H D+KP N+L+
Sbjct: 94  ME---TDLEVIIKDNSLVLTPSHIKAYMLMTLQGLEYLHQHWIL-----HRDLKPNNLLL 145

Query: 195 TCRKGQPPLAILMDFGSARPAQSKFALGQRRYSCR 229
               G   LA   DFG A+     F    R Y+ +
Sbjct: 146 D-ENGVLKLA---DFGLAKS----FGSPNRAYTHQ 172

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens} Length = 324

 Score = 73.0 bits (180), Expect = 3e-15
 Identities = 53/211 (25%), Positives = 83/211 (39%), Gaps = 59/211 (27%)

Query: 26  NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN 85
             Y  L +LGEG +A VY  K  +T                      D   A+K++ +++
Sbjct: 2   ETYIKLDKLGEGTYATVYKGKSKLT----------------------DNLVALKEIRLEH 39

Query: 86  NEQLEM--VREEIRVSSL--FSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGT 141
            E      +RE   VS L    H N++ L D  II  + +          L+F  +LD  
Sbjct: 40  EEGAPCTAIRE---VSLLKDLKHANIVTLHD--IIHTEKS--------LTLVFE-YLD-- 83

Query: 142 LLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHS---LEPPYAHNDVKPGNILITCRK 198
             D  + +       +  +V    +Q+  GL + H    L     H D+KP N+LI   +
Sbjct: 84  -KDLKQYLDDCGNIINMHNVKLFLFQLLRGLAYCHRQKVL-----HRDLKPQNLLIN-ER 136

Query: 199 GQPPLAILMDFGSARPAQSKFALGQRRYSCR 229
           G+  LA   DFG AR      ++  + Y   
Sbjct: 137 GELKLA---DFGLARA----KSIPTKTYDNE 160

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A Length = 419

 Score = 73.2 bits (180), Expect = 4e-15
 Identities = 34/189 (17%), Positives = 66/189 (34%), Gaps = 32/189 (16%)

Query: 25  ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ 84
            + Y + + LG G    V L  E  T    A       ++      +            +
Sbjct: 134 RDEYIMSKTLGSGACGEVKLAFERKTCKKVAI------RIISKRKFAIGSA--------R 179

Query: 85  NNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLD 144
             +    V  EI +    +H          II +K   +     + Y++  +   G L D
Sbjct: 180 EADPALNVETEIEILKKLNHPC--------IIKIKNFFD---AEDYYIVLELMEGGELFD 228

Query: 145 HAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLA 204
                    +    +     FYQ+   ++++H       H D+KP N+L++ ++    + 
Sbjct: 229 KV----VGNKRLKEATCKLYFYQMLLAVQYLHENG--IIHRDLKPENVLLSSQEEDCLIK 282

Query: 205 ILMDFGSAR 213
           I  DFG ++
Sbjct: 283 I-TDFGHSK 290

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A* Length = 335

 Score = 72.7 bits (179), Expect = 4e-15
 Identities = 39/207 (18%), Positives = 76/207 (36%), Gaps = 51/207 (24%)

Query: 27  RYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMK---KVLI 83
           RY   R LG+GGFA  + + +  T            +V           +A K   K L+
Sbjct: 42  RYVRGRFLGKGGFAKCFEISDADT-----------KEV-----------FAGKIVPKSLL 79

Query: 84  QNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLL 143
               Q E +  EI +    +H++++    H                 +++  +    +LL
Sbjct: 80  LKPHQREKMSMEISIHRSLAHQHVVGF--HGFFEDNDF--------VFVVLELCRRRSLL 129

Query: 144 DHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPL 203
           +  K    +++  +  +      QI  G +++H       H D+K GN+ +     +  +
Sbjct: 130 ELHK----RRKALTEPEARYYLRQIVLGCQYLHRNR--VIHRDLKLGNLFLN-EDLEVKI 182

Query: 204 AILMDFG-SARPAQSKFALGQRRY-SC 228
               DFG + +        G+R+   C
Sbjct: 183 G---DFGLATKVEYD----GERKKVLC 202

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A* Length = 486

 Score = 73.2 bits (180), Expect = 5e-15
 Identities = 42/191 (21%), Positives = 71/191 (37%), Gaps = 41/191 (21%)

Query: 25  ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ 84
             RY I+  LG+G F  V   K                             YA+K +   
Sbjct: 21  AERYNIVCMLGKGSFGEVLKCK----------------------DRITQQEYAVKVINKA 58

Query: 85  N--NEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTL 142
           +  N+    +  E+ +     H N        I+ +    E       Y++  ++  G L
Sbjct: 59  SAKNKDTSTILREVELLKKLDHPN--------IMKLFEILED--SSSFYIVGELYTGGEL 108

Query: 143 LDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPP 202
            D       K++ FS  D  +I  Q+ +G+ +MH       H D+KP NIL+  ++    
Sbjct: 109 FDEII----KRKRFSEHDAARIIKQVFSGITYMHKHN--IVHRDLKPENILLESKEKDCD 162

Query: 203 LAILMDFGSAR 213
           + I +DFG + 
Sbjct: 163 IKI-IDFGLST 172

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A Length = 377

 Score = 73.1 bits (179), Expect = 5e-15
 Identities = 24/198 (12%), Positives = 56/198 (28%), Gaps = 18/198 (9%)

Query: 27  RYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNN 86
                  LG+          +  T ++          V   +           K  +   
Sbjct: 74  TLVRGTVLGQEDPYAYLEATDQETGESFEV------HVPYFTERPPSNAIKQMKEEVLRL 127

Query: 87  EQLEMVREEIRVSSLFSHRNLLPLLDH----AIIAVKANQEGSWKHEAYLLFPVHLD--G 140
             L  ++ + +            L+       +I V+ ++   W    + L+P       
Sbjct: 128 RLLRGIKNQKQAKVHLRFIFPFDLVKDPQKKKMIRVRLDERDMWVLSRFFLYPRMQSNLQ 187

Query: 141 TLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQ 200
           T  +      +  +       LQ+  Q+   L  +H       H  ++P +I++  ++G 
Sbjct: 188 TFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHYG--LVHTYLRPVDIVL-DQRGG 244

Query: 201 PPLAILMDFGSARPAQSK 218
                L  F       ++
Sbjct: 245 ---VFLTGFEHLVRDGAR 259

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens} Length = 373

 Score = 72.8 bits (179), Expect = 5e-15
 Identities = 51/191 (26%), Positives = 75/191 (39%), Gaps = 41/191 (21%)

Query: 25  ENRYRILRQ--LGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVL 82
            + Y + +   LG G F  V+  +ET T        GL                A K + 
Sbjct: 86  NSFYTVSKTEILGGGRFGQVHKCEETAT--------GL--------------KLAAKIIK 123

Query: 83  IQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTL 142
            +  +  E V+ EI V +   H NL+ L D       A +    K++  L+      G L
Sbjct: 124 TRGMKDKEEVKNEISVMNQLDHANLIQLYD-------AFES---KNDIVLVMEYVDGGEL 173

Query: 143 LDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPP 202
            D    +  +    +  D +    QIC G++HMH +     H D+KP NIL   R  +  
Sbjct: 174 FDR---IIDESYNLTELDTILFMKQICEGIRHMHQMY--ILHLDLKPENILCVNRDAKQI 228

Query: 203 LAILMDFGSAR 213
             I  DFG AR
Sbjct: 229 KII--DFGLAR 237

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A* Length = 494

 Score = 73.2 bits (180), Expect = 5e-15
 Identities = 38/191 (19%), Positives = 68/191 (35%), Gaps = 41/191 (21%)

Query: 25  ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ 84
              Y+ +++LG G +  V L +                              A+K +   
Sbjct: 36  SEMYQRVKKLGSGAYGEVLLCR----------------------DKVTHVERAIKIIRKT 73

Query: 85  N--NEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTL 142
           +        + EE+ V  L  H N        I+ +    E   K   YL+   +  G L
Sbjct: 74  SVSTSSNSKLLEEVAVLKLLDHPN--------IMKLYDFFED--KRNYYLVMECYKGGEL 123

Query: 143 LDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPP 202
            D        +  F+  D   I  Q+ +G+ ++H       H D+KP N+L+  ++    
Sbjct: 124 FDEII----HRMKFNEVDAAVIIKQVLSGVTYLHKHN--IVHRDLKPENLLLESKEKDAL 177

Query: 203 LAILMDFGSAR 213
           + I +DFG + 
Sbjct: 178 IKI-VDFGLSA 187

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II} Length = 345

 Score = 72.6 bits (178), Expect = 6e-15
 Identities = 32/220 (14%), Positives = 65/220 (29%), Gaps = 57/220 (25%)

Query: 25  ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMK----- 79
           + +Y +   +G+G +  V +  E  T                          A+K     
Sbjct: 25  QKKYHLKGAIGQGSYGVVRVAIENQTRA----------------------IRAIKIMNKN 62

Query: 80  KVLIQNNEQLEMVREEIRVSSLFSHRNLLPLLD---------------------HAIIAV 118
           K+   N + +E ++ E+R+     H N+  L +                       +   
Sbjct: 63  KIRQINPKDVERIKTEVRLMKKLHHPNIARLYEVYEDEQYICLVMELCHGGHLLDKLNVF 122

Query: 119 KANQEGSWKHEAYLLFPVHLDGTLLD-----HAKVMQTKKEFFSTSDVLQIFYQICAGLK 173
             +  G    +              +          ++         +  I  QI + L 
Sbjct: 123 IDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLISNIMRQIFSALH 182

Query: 174 HMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSAR 213
           ++H+      H D+KP N L +  K      +  DFG ++
Sbjct: 183 YLHNQG--ICHRDIKPENFLFSTNKSFEIKLV--DFGLSK 218

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens} Length = 311

 Score = 71.8 bits (177), Expect = 7e-15
 Identities = 45/192 (23%), Positives = 72/192 (37%), Gaps = 48/192 (25%)

Query: 26  NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN 85
            +Y  + ++GEG +  V+  +   T             V            A+KK L   
Sbjct: 3   EKYEKIGKIGEGSYGVVFKCRNRDT----------GQIV------------AIKKFLESE 40

Query: 86  NEQLEMVRE----EIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGT 141
           ++   ++++    EIR+     H NL+ LL+  +   K           +L+F  + D T
Sbjct: 41  DD--PVIKKIALREIRMLKQLKHPNLVNLLE--VFRRKRR--------LHLVFE-YCDHT 87

Query: 142 LLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQP 201
           +L     +   +       V  I +Q    +   H       H DVKP NILIT +    
Sbjct: 88  VL---HELDRYQRGVPEHLVKSITWQTLQAVNFCHKHN--CIHRDVKPENILIT-KHSVI 141

Query: 202 PLAILMDFGSAR 213
            L    DFG AR
Sbjct: 142 KLC---DFGFAR 150

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} Length = 331

 Score = 71.9 bits (177), Expect = 8e-15
 Identities = 50/206 (24%), Positives = 80/206 (38%), Gaps = 52/206 (25%)

Query: 26  NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN 85
            +Y  L  +GEG +  V   +   T             V            A+KK L  +
Sbjct: 25  EKYENLGLVGEGSYGMVMKCRNKDT----------GRIV------------AIKKFLESD 62

Query: 86  NEQLEMVRE----EIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGT 141
           ++  +MV++    EI++     H NL+ LL+  +      ++  W    YL+F   +D T
Sbjct: 63  DD--KMVKKIAMREIKLLKQLRHENLVNLLE--VC----KKKKRW----YLVFE-FVDHT 109

Query: 142 LLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQP 201
           +L     ++          V +  +QI  G+   HS      H D+KP NIL++ + G  
Sbjct: 110 IL---DDLELFPNGLDYQVVQKYLFQIINGIGFCHSHN--IIHRDIKPENILVS-QSGVV 163

Query: 202 PLAILMDFGSARPAQSKFALGQRRYS 227
            L    DFG AR      A     Y 
Sbjct: 164 KLC---DFGFART----LAAPGEVYD 182

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A* Length = 287

 Score = 70.7 bits (174), Expect = 1e-14
 Identities = 43/191 (22%), Positives = 73/191 (38%), Gaps = 41/191 (21%)

Query: 25  ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ 84
             RY I+  LG+G F  V   K+ +T                         YA+K +   
Sbjct: 21  AERYNIVCMLGKGSFGEVLKCKDRITQQ----------------------EYAVKVINKA 58

Query: 85  --NNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTL 142
              N+    +  E+ +     H N        I+ +    E       Y++  ++  G L
Sbjct: 59  SAKNKDTSTILREVELLKKLDHPN--------IMKLFEILED--SSSFYIVGELYTGGEL 108

Query: 143 LDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPP 202
            D       K++ FS  D  +I  Q+ +G+ +MH       H D+KP NIL+  ++    
Sbjct: 109 FDEI----IKRKRFSEHDAARIIKQVFSGITYMHKHN--IVHRDLKPENILLESKEKDCD 162

Query: 203 LAILMDFGSAR 213
           + I+ DFG + 
Sbjct: 163 IKII-DFGLST 172

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei} Length = 504

 Score = 71.3 bits (175), Expect = 2e-14
 Identities = 45/189 (23%), Positives = 66/189 (34%), Gaps = 26/189 (13%)

Query: 25  ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ 84
              Y  +R+LG G +  V L KE       A       KV   S           K    
Sbjct: 35  GESYFKVRKLGSGAYGEVLLCKEKNGHSEKAI------KVIKKSQFDKGRYSDDNK---N 85

Query: 85  NNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLD 144
             +  E +  EI +     H N        II +    E   K   YL+   +  G L +
Sbjct: 86  IEKFHEEIYNEISLLKSLDHPN--------IIKLFDVFED--KKYFYLVTEFYEGGELFE 135

Query: 145 HAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLA 204
                   +  F   D   I  QI +G+ ++H       H D+KP NIL+  +     + 
Sbjct: 136 QII----NRHKFDECDAANIMKQILSGICYLHKHN--IVHRDIKPENILLENKNSLLNIK 189

Query: 205 ILMDFGSAR 213
           I +DFG + 
Sbjct: 190 I-VDFGLSS 197

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii} Length = 285

 Score = 70.0 bits (172), Expect = 3e-14
 Identities = 44/190 (23%), Positives = 70/190 (36%), Gaps = 36/190 (18%)

Query: 25  ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVL-I 83
           ++ +   R+LG G F  V+LV+E  +                           +K +   
Sbjct: 21  DDLFIFKRKLGSGAFGDVHLVEERSS----------------------GLERVIKTINKD 58

Query: 84  QNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLL 143
           ++   +E +  EI V     H N        II +    E    H  Y++      G LL
Sbjct: 59  RSQVPMEQIEAEIEVLKSLDHPN--------IIKIFEVFED--YHNMYIVMETCEGGELL 108

Query: 144 DHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPL 203
           +     Q + +  S   V ++  Q+   L + HS      H D+KP NIL        P+
Sbjct: 109 ERIVSAQARGKALSEGYVAELMKQMMNALAYFHSQH--VVHKDLKPENILFQDTSPHSPI 166

Query: 204 AILMDFGSAR 213
            I+ DFG A 
Sbjct: 167 KII-DFGLAE 175

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A Length = 304

 Score = 69.9 bits (172), Expect = 3e-14
 Identities = 37/189 (19%), Positives = 69/189 (36%), Gaps = 39/189 (20%)

Query: 25  ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ 84
              +  +  LG G F+ V+LVK+ +T                         +A+K +   
Sbjct: 8   RKTFIFMEVLGSGAFSEVFLVKQRLTGK----------------------LFALKCIKKS 45

Query: 85  NNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLD 144
              +   +  EI V     H N        I+ ++   E       YL+  +   G L D
Sbjct: 46  PAFRDSSLENEIAVLKKIKHEN--------IVTLEDIYES--TTHYYLVMQLVSGGELFD 95

Query: 145 HAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLA 204
                  ++  ++  D   +  Q+ + +K++H       H D+KP N+L    +    + 
Sbjct: 96  RI----LERGVYTEKDASLVIQQVLSAVKYLHENG--IVHRDLKPENLLYLTPEENSKIM 149

Query: 205 ILMDFGSAR 213
           I  DFG ++
Sbjct: 150 I-TDFGLSK 157

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 3lau_A* 2wtv_A* ... Length = 279

 Score = 69.5 bits (171), Expect = 4e-14
 Identities = 44/194 (22%), Positives = 68/194 (35%), Gaps = 40/194 (20%)

Query: 26  NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN 85
             + I R LG+G F  VYL +E  +         LA KV             + K  ++ 
Sbjct: 9   EDFEIGRPLGKGKFGNVYLAREKQSKFI------LALKV-------------LFKAQLEK 49

Query: 86  NEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDH 145
                 +R E+ + S   H N+L L  +                 YL+      GT+   
Sbjct: 50  AGVEHQLRREVEIQSHLRHPNILRL--YGYFHDATR--------VYLILEYAPLGTVYRE 99

Query: 146 AKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAI 205
            +    K   F          ++   L + HS      H D+KP N+L+    G+  +A 
Sbjct: 100 LQ----KLSKFDEQRTATYITELANALSYCHSKR--VIHRDIKPENLLLG-SAGELKIA- 151

Query: 206 LMDFG-SARPAQSK 218
             DFG S     S+
Sbjct: 152 --DFGWSVHAPSSR 163

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B Length = 326

 Score = 69.2 bits (170), Expect = 7e-14
 Identities = 50/200 (25%), Positives = 79/200 (39%), Gaps = 54/200 (27%)

Query: 26  NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN 85
            +Y  + ++GEG +  V+  ++                             A+K+V +Q 
Sbjct: 11  QQYECVAEIGEGAYGKVFKARDLKNGGR---------------------FVALKRVRVQT 49

Query: 86  NEQ---LEMVREEIRVSSL-----FSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVH 137
            E+   L  +RE   V+ L     F H N++ L D     V        + +  L+F  H
Sbjct: 50  GEEGMPLSTIRE---VAVLRHLETFEHPNVVRLFD-----VCTVSRTDRETKLTLVFE-H 100

Query: 138 LDGTLLDHAKVMQTKKE-FFSTSDVLQIFYQICAGLKHMHS---LEPPYAHNDVKPGNIL 193
           +D    D    +    E    T  +  + +Q+  GL  +HS   +     H D+KP NIL
Sbjct: 101 VD---QDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSHRVV-----HRDLKPQNIL 152

Query: 194 ITCRKGQPPLAILMDFGSAR 213
           +T   GQ  LA   DFG AR
Sbjct: 153 VT-SSGQIKLA---DFGLAR 168

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A* Length = 284

 Score = 68.7 bits (169), Expect = 7e-14
 Identities = 36/191 (18%), Positives = 68/191 (35%), Gaps = 41/191 (21%)

Query: 25  ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ 84
            + Y +  +LG+G F+ V       T                         +A K +  +
Sbjct: 5   SDNYDVKEELGKGAFSVVRRCVHKTTGL----------------------EFAAKIINTK 42

Query: 85  --NNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTL 142
             +    + +  E R+     H N        I+ +  + +   +   YL+F +   G L
Sbjct: 43  KLSARDFQKLEREARICRKLQHPN--------IVRLHDSIQE--ESFHYLVFDLVTGGEL 92

Query: 143 LDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPP 202
            +        +EF+S +D      QI   + + HS      H ++KP N+L+  +     
Sbjct: 93  FEDI----VAREFYSEADASHCIQQILESIAYCHSNG--IVHRNLKPENLLLASKAKGAA 146

Query: 203 LAILMDFGSAR 213
           + +  DFG A 
Sbjct: 147 VKL-ADFGLAI 156

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A* Length = 277

 Score = 68.8 bits (169), Expect = 7e-14
 Identities = 40/189 (21%), Positives = 64/189 (33%), Gaps = 39/189 (20%)

Query: 25  ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ 84
              Y +   +G G +  V +  +  T                          A KK+   
Sbjct: 8   NQYYTLENTIGRGSWGEVKIAVQKGT----------------------RIRRAAKKIPKY 45

Query: 85  NNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLD 144
             E ++  ++EI +     H N        II +    E     + YL+  +   G L +
Sbjct: 46  FVEDVDRFKQEIEIMKSLDHPN--------IIRLYETFED--NTDIYLVMELCTGGELFE 95

Query: 145 HAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLA 204
                   K  F  SD  +I   + + + + H L    AH D+KP N L        PL 
Sbjct: 96  RV----VHKRVFRESDAARIMKDVLSAVAYCHKLN--VAHRDLKPENFLFLTDSPDSPLK 149

Query: 205 ILMDFGSAR 213
           ++ DFG A 
Sbjct: 150 LI-DFGLAA 157

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A* Length = 327

 Score = 68.8 bits (169), Expect = 9e-14
 Identities = 40/193 (20%), Positives = 67/193 (34%), Gaps = 41/193 (21%)

Query: 25  ENRYRIL-RQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLI 83
            N Y +  ++LG G FA V       T                         YA K +  
Sbjct: 27  NNFYILTSKELGRGKFAVVRQCISKSTGQ----------------------EYAAKFLKK 64

Query: 84  Q--NNEQLEMVREEIRV-SSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDG 140
           +    +    +  EI V     S   ++ L +         +      E  L+      G
Sbjct: 65  RRRGQDCRAEILHEIAVLELAKSCPRVINLHE-------VYEN---TSEIILILEYAAGG 114

Query: 141 TLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQ 200
            +      +    E  S +DV+++  QI  G+ ++H       H D+KP NIL++     
Sbjct: 115 EIFS--LCLPELAEMVSENDVIRLIKQILEGVYYLHQNN--IVHLDLKPQNILLSSIYPL 170

Query: 201 PPLAILMDFGSAR 213
             + I+ DFG +R
Sbjct: 171 GDIKIV-DFGMSR 182

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens} Length = 349

 Score = 68.9 bits (169), Expect = 1e-13
 Identities = 45/189 (23%), Positives = 70/189 (37%), Gaps = 41/189 (21%)

Query: 25  ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ 84
            + + +  +LG G  + VY  K+  T                         YA+K +   
Sbjct: 52  SDFFEVESELGRGATSIVYRCKQKGT----------------------QKPYALKVLKKT 89

Query: 85  NNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLD 144
            ++  ++VR EI V    SH N        II +K   E     E  L+  +   G L D
Sbjct: 90  VDK--KIVRTEIGVLLRLSHPN--------IIKLKEIFET--PTEISLVLELVTGGELFD 137

Query: 145 HAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLA 204
                  +K ++S  D      QI   + ++H       H D+KP N+L        PL 
Sbjct: 138 RI----VEKGYYSERDAADAVKQILEAVAYLHENG--IVHRDLKPENLLYATPAPDAPLK 191

Query: 205 ILMDFGSAR 213
           I  DFG ++
Sbjct: 192 I-ADFGLSK 199

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Length = 308

 Score = 68.4 bits (168), Expect = 1e-13
 Identities = 47/203 (23%), Positives = 73/203 (35%), Gaps = 58/203 (28%)

Query: 26  NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN 85
           +RY  + ++G G +  VY  ++  +                          A+K V + N
Sbjct: 9   SRYEPVAEIGVGAYGTVYKARDPHS----------------------GHFVALKSVRVPN 46

Query: 86  NEQLEM------VREEIRVSSL-----FSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLF 134
                       VRE   V+ L     F H N++ L+D     V A      + +  L+F
Sbjct: 47  GGGGGGGLPISTVRE---VALLRRLEAFEHPNVVRLMD-----VCATSRTDREIKVTLVF 98

Query: 135 PVHLDGTLLDHAKVMQTKKE-FFSTSDVLQIFYQICAGLKHMHS---LEPPYAHNDVKPG 190
             H+D    D    +            +  +  Q   GL  +H+   +     H D+KP 
Sbjct: 99  E-HVD---QDLRTYLDKAPPPGLPAETIKDLMRQFLRGLDFLHANCIV-----HRDLKPE 149

Query: 191 NILITCRKGQPPLAILMDFGSAR 213
           NIL+T   G   LA   DFG AR
Sbjct: 150 NILVT-SGGTVKLA---DFGLAR 168

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A* Length = 676

 Score = 68.9 bits (168), Expect = 2e-13
 Identities = 33/189 (17%), Positives = 66/189 (34%), Gaps = 33/189 (17%)

Query: 27  RYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKV-LIQN 85
            + +  +LG GGF YV       T +                        A+K+     +
Sbjct: 15  PWEMKERLGTGGFGYVLRWIHQDTGE----------------------QVAIKQCRQELS 52

Query: 86  NEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLD-GTLLD 144
            +  E    EI++    +H N++   +     V    +    ++  LL   + + G L  
Sbjct: 53  PKNRERWCLEIQIMKKLNHPNVVSARE-----VPDGLQKLAPNDLPLLAMEYCEGGDLRK 107

Query: 145 HAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLA 204
           +    +          +  +   I + L+++H       H D+KP NI++     +    
Sbjct: 108 YLNQFE-NCCGLKEGPIRTLLSDISSALRYLHENR--IIHRDLKPENIVLQPGPQRLIHK 164

Query: 205 ILMDFGSAR 213
           I +D G A+
Sbjct: 165 I-IDLGYAK 172

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} Length = 343

 Score = 68.2 bits (167), Expect = 2e-13
 Identities = 40/210 (19%), Positives = 67/210 (31%), Gaps = 45/210 (21%)

Query: 21  VWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKK 80
           + +    Y IL+Q+G GG + V+ V                              YA+K 
Sbjct: 4   ISVKGRIYSILKQIGSGGSSKVFQVLN-----------------------EKKQIYAIKY 40

Query: 81  VLIQN--NEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHL 138
           V ++   N+ L+  R EI   +     +        II +   +        Y++     
Sbjct: 41  VNLEEADNQTLDSYRNEIAYLNKLQQHS------DKIIRLYDYEIT--DQYIYMVMECG- 91

Query: 139 DGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRK 198
           +  L    K    KK+     +    +  +   +  +H       H+D+KP N LI    
Sbjct: 92  NIDLNSWLK----KKKSIDPWERKSYWKNMLEAVHTIHQHG--IVHSDLKPANFLIV--D 143

Query: 199 GQPPLAILMDFGSARPAQSKFALGQRRYSC 228
           G   L    DFG A   Q       +    
Sbjct: 144 GMLKLI---DFGIANQMQPDTTSVVKDSQV 170

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A* Length = 322

 Score = 67.7 bits (166), Expect = 2e-13
 Identities = 35/189 (18%), Positives = 66/189 (34%), Gaps = 32/189 (16%)

Query: 25  ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ 84
            + Y + + LG G    V L  E  T    A       K+      +            +
Sbjct: 9   RDEYIMSKTLGSGACGEVKLAFERKTCKKVAI------KIISKRKFAIGSA--------R 54

Query: 85  NNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLD 144
             +    V  EI +    +H          II +K   +     + Y++  +   G L D
Sbjct: 55  EADPALNVETEIEILKKLNHPC--------IIKIKNFFD---AEDYYIVLELMEGGELFD 103

Query: 145 HAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLA 204
                    +    +     FYQ+   ++++H       H D+KP N+L++ ++    + 
Sbjct: 104 KV----VGNKRLKEATCKLYFYQMLLAVQYLHENG--IIHRDLKPENVLLSSQEEDCLIK 157

Query: 205 ILMDFGSAR 213
           I  DFG ++
Sbjct: 158 I-TDFGHSK 165

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A* Length = 313

 Score = 67.7 bits (166), Expect = 2e-13
 Identities = 40/208 (19%), Positives = 66/208 (31%), Gaps = 45/208 (21%)

Query: 23  INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVL 82
           +    Y IL+Q+G GG + V+ V                              YA+K V 
Sbjct: 25  VKGRIYSILKQIGSGGSSKVFQVLN-----------------------EKKQIYAIKYVN 61

Query: 83  IQN--NEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDG 140
           ++   N+ L+  R EI   +     +        II +   +        Y++     + 
Sbjct: 62  LEEADNQTLDSYRNEIAYLNKLQQHS------DKIIRLYDYEIT--DQYIYMVMECG-NI 112

Query: 141 TLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQ 200
            L    K    KK+     +    +  +   +  +H       H+D+KP N LI    G 
Sbjct: 113 DLNSWLK----KKKSIDPWERKSYWKNMLEAVHTIHQHG--IVHSDLKPANFLIV--DGM 164

Query: 201 PPLAILMDFGSARPAQSKFALGQRRYSC 228
             L    DFG A   Q       +    
Sbjct: 165 LKLI---DFGIANQMQPDTTSVVKDSQV 189

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A Length = 292

 Score = 67.5 bits (166), Expect = 2e-13
 Identities = 50/215 (23%), Positives = 74/215 (34%), Gaps = 66/215 (30%)

Query: 26  NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN 85
            +Y  L ++GEG +  V+  K   T                          A+K+V    
Sbjct: 2   QKYEKLEKIGEGTYGTVFKAKNRET----------------------HEIVALKRV---- 35

Query: 86  NEQLEMVRE--------EIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVH 137
             +L+   E        EI +     H+N++ L D  ++               L+F   
Sbjct: 36  --RLDDDDEGVPSSALREICLLKELKHKNIVRLHD--VLHSDKK--------LTLVFE-F 82

Query: 138 LDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHS---LEPPYAHNDVKPGNILI 194
            D    D  K   +         V    +Q+  GL   HS   L     H D+KP N+LI
Sbjct: 83  CD---QDLKKYFDSCNGDLDPEIVKSFLFQLLKGLGFCHSRNVL-----HRDLKPQNLLI 134

Query: 195 TCRKGQPPLAILMDFGSARPAQSKFALGQRRYSCR 229
             R G+  LA   +FG AR     F +  R YS  
Sbjct: 135 N-RNGELKLA---NFGLAR----AFGIPVRCYSAE 161

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B Length = 362

 Score = 67.7 bits (166), Expect = 3e-13
 Identities = 36/191 (18%), Positives = 68/191 (35%), Gaps = 41/191 (21%)

Query: 25  ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ 84
            + Y +  +LG+G F+ V       T                         +A K +  +
Sbjct: 28  SDNYDVKEELGKGAFSVVRRCVHKTTGL----------------------EFAAKIINTK 65

Query: 85  --NNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTL 142
             +    + +  E R+     H N        I+ +  + +   +   YL+F +   G L
Sbjct: 66  KLSARDFQKLEREARICRKLQHPN--------IVRLHDSIQE--ESFHYLVFDLVTGGEL 115

Query: 143 LDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPP 202
            +        +EF+S +D      QI   + + HS      H ++KP N+L+  +     
Sbjct: 116 FEDI----VAREFYSEADASHCIQQILESIAYCHSNG--IVHRNLKPENLLLASKAKGAA 169

Query: 203 LAILMDFGSAR 213
           + +  DFG A 
Sbjct: 170 VKL-ADFGLAI 179

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3mb7_A* 3mb6_A* 3owj_A* 3owk_A* ... Length = 330

 Score = 66.9 bits (164), Expect = 4e-13
 Identities = 45/203 (22%), Positives = 81/203 (39%), Gaps = 46/203 (22%)

Query: 12  YDSVNGGGDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLS 71
           Y         W N++ Y+++R+LG G ++ V+        +          KV       
Sbjct: 22  YWDYESHVVEWGNQDDYQLVRKLGRGKYSEVFEAINITNNE----------KV------- 64

Query: 72  DDGTYAMKKVLIQNNEQLEMVREEIRV-SSLFSHRNLLPLLDHAIIAVKANQEGSWKHEA 130
                 +K   ++  ++ ++ RE I++  +L    N++ L D     VK           
Sbjct: 65  -----VVKI--LKPVKKKKIKRE-IKILENLRGGPNIITLAD----IVKDPVSR----TP 108

Query: 131 YLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPG 190
            L+F  H++ T  D  ++ QT     +  D+    Y+I   L + HS+     H DVKP 
Sbjct: 109 ALVFE-HVNNT--DFKQLYQT----LTDYDIRFYMYEILKALDYCHSMG--IMHRDVKPH 159

Query: 191 NILITCRKGQPPLAILMDFGSAR 213
           N++I     +  L    D+G A 
Sbjct: 160 NVMIDHEHRKLRLI---DWGLAE 179

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7 Length = 367

 Score = 67.0 bits (164), Expect = 4e-13
 Identities = 53/209 (25%), Positives = 81/209 (38%), Gaps = 42/209 (20%)

Query: 12  YDSVNGGGDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLS 71
           +         W     YR L+ +G G +  V    +  T    A       K+  P    
Sbjct: 11  FYRQEVTKTAWEVRAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIK-----KLYRPF--- 62

Query: 72  DDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAY 131
               +A K+            RE +R+     H N++ LLD        ++      + Y
Sbjct: 63  QSELFA-KRAY----------RE-LRLLKHMRHENVIGLLD----VFTPDETLDDFTDFY 106

Query: 132 LLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIF-YQICAGLKHMHSLEPPYAHNDVKPG 190
           L+      GT  D  K+M+ +K      D +Q   YQ+  GL+++H+      H D+KPG
Sbjct: 107 LVM--PFMGT--DLGKLMKHEK---LGEDRIQFLVYQMLKGLRYIHAAG--IIHRDLKPG 157

Query: 191 NILIT--CRKGQPPLAILMDFGSARPAQS 217
           N+ +   C      L IL DFG AR A S
Sbjct: 158 NLAVNEDCE-----LKIL-DFGLARQADS 180

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens} Length = 353

 Score = 66.6 bits (163), Expect = 6e-13
 Identities = 48/211 (22%), Positives = 77/211 (36%), Gaps = 47/211 (22%)

Query: 12  YDSVNGGGDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLS 71
           +   +     W     Y     +G G +  V    +  + +          KV       
Sbjct: 10  FYKQDVNKTAWELPKTYVSPTHVGSGAYGSVCSAIDKRSGE----------KV------- 52

Query: 72  DDGTYAMKKVL--IQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHE 129
                A+KK+    Q+    +    E+ +     H N++ LLD               ++
Sbjct: 53  -----AIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLD----VFTPASSLRNFYD 103

Query: 130 AYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIF-YQICAGLKHMHSLEPPYAHNDVK 188
            YL+       T  D  K+M  K     + + +Q   YQ+  GLK++HS      H D+K
Sbjct: 104 FYLVM--PFMQT--DLQKIMGLK----FSEEKIQYLVYQMLKGLKYIHSAG--VVHRDLK 153

Query: 189 PGNILIT--CRKGQPPLAILMDFGSARPAQS 217
           PGN+ +   C      L IL DFG AR A +
Sbjct: 154 PGNLAVNEDCE-----LKIL-DFGLARHADA 178

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major} Length = 360

 Score = 66.5 bits (163), Expect = 6e-13
 Identities = 40/204 (19%), Positives = 74/204 (36%), Gaps = 38/204 (18%)

Query: 14  SVNGGGDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDD 73
           +           +R+++ R  G+G F  V L KE  T             V         
Sbjct: 11  AAAADERSRKEMDRFQVERMAGQGTFGTVQLGKEKSTGM----------SV--------- 51

Query: 74  GTYAMKKVLIQNNEQLEMVRE--EIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAY 131
              A+KKV+    +     RE   ++  ++  H N++ L  +     + +     + + Y
Sbjct: 52  ---AIKKVI---QDPRFRNRELQIMQDLAVLHHPNIVQLQSYFYTLGERD-----RRDIY 100

Query: 132 LLFPV--HLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKP 189
           L   V  ++  TL    +    ++       +    +Q+   +  +H       H D+KP
Sbjct: 101 LNV-VMEYVPDTLHRCCRNYYRRQVAPPPILIKVFLFQLIRSIGCLHLPSVNVCHRDIKP 159

Query: 190 GNILITCRKGQPPLAILMDFGSAR 213
            N+L+    G   L    DFGSA+
Sbjct: 160 HNVLVNEADGTLKLC---DFGSAK 180

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} Length = 362

 Score = 66.6 bits (163), Expect = 6e-13
 Identities = 46/227 (20%), Positives = 77/227 (33%), Gaps = 61/227 (26%)

Query: 12  YDSVNGGGDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLS 71
               +   ++   ++ Y + R +  G +  V    ++               V       
Sbjct: 8   AAMRDLIAELHAMQSPYTVQRFISSGSYGAVCAGVDSEGI-----------PV------- 49

Query: 72  DDGTYAMKKVLIQNNEQLEM------------VREEIRVSSLFSHRNLLPLLDHAIIAVK 119
                A+K+V    ++   +            +R EIR+ + F H N+L L D  I    
Sbjct: 50  -----AIKRVFNTVSDGRTVNILSDSFLCKRVLR-EIRLLNHFHHPNILGLRD--IFVHF 101

Query: 120 ANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLE 179
                   H+ YL+    L  T  D A+V+  ++   S   +    Y I  GL  +H   
Sbjct: 102 EEPA---MHKLYLVT--ELMRT--DLAQVIHDQRIVISPQHIQYFMYHILLGLHVLHE-- 152

Query: 180 PPYA---HNDVKPGNILIT--CRKGQPPLAILMDFGSARPAQSKFAL 221
              A   H D+ PGNIL+          + I  DF  AR   +    
Sbjct: 153 ---AGVVHRDLHPGNILLADNND-----ITIC-DFNLAREDTADANK 190

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ... Length = 367

 Score = 66.2 bits (162), Expect = 8e-13
 Identities = 54/212 (25%), Positives = 81/212 (38%), Gaps = 48/212 (22%)

Query: 12  YDSVNGGGDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLS 71
           +        +W    RY+ L  +G G +  V    +T T    A       K+  P    
Sbjct: 15  FYRQELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVK-----KLSRPF--- 66

Query: 72  DDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAY 131
               +A K+            RE +R+     H N++ LLD         +     ++ Y
Sbjct: 67  QSIIHA-KRTY----------RE-LRLLKHMKHENVIGLLD----VFTPARSLEEFNDVY 110

Query: 132 LLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIF-YQICAGLKHMHSLEPPYA---HNDV 187
           L+    L G   D   +++ +K    T D +Q   YQI  GLK++HS     A   H D+
Sbjct: 111 LVTH--LMGA--DLNNIVKCQK---LTDDHVQFLIYQILRGLKYIHS-----ADIIHRDL 158

Query: 188 KPGNILI--TCRKGQPPLAILMDFGSARPAQS 217
           KP N+ +   C      L IL DFG AR    
Sbjct: 159 KPSNLAVNEDCE-----LKIL-DFGLARHTAD 184

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A* Length = 464

 Score = 66.4 bits (162), Expect = 9e-13
 Identities = 53/221 (23%), Positives = 89/221 (40%), Gaps = 43/221 (19%)

Query: 4   SLSGLNALYDSVNGGGDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANK 63
           S S ++  + SV  G   +    RY+ L+ +G G    V    + V     A       K
Sbjct: 40  SKSKVDNQFYSVEVGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIK-----K 94

Query: 64  VKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQE 123
           +  P     + T+A K+            R E+ +    +H+N++ LL+         + 
Sbjct: 95  LSRP---FQNQTHA-KRAY----------R-ELVLMKCVNHKNIISLLN----VFTPQKT 135

Query: 124 GSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIF-YQICAGLKHMHSLEPPY 182
                + YL+    L     +  +V+Q +       + +    YQ+  G+KH+HS     
Sbjct: 136 LEEFQDVYLVM--ELMDA--NLCQVIQMEL----DHERMSYLLYQMLCGIKHLHSAG--I 185

Query: 183 AHNDVKPGNILI--TCRKGQPPLAILMDFGSARPAQSKFAL 221
            H D+KP NI++   C      L IL DFG AR A + F +
Sbjct: 186 IHRDLKPSNIVVKSDCT-----LKIL-DFGLARTAGTSFMM 220

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} PDB: 2qkr_A* Length = 311

 Score = 66.0 bits (162), Expect = 9e-13
 Identities = 53/215 (24%), Positives = 80/215 (37%), Gaps = 67/215 (31%)

Query: 26  NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN 85
            +Y+ L ++GEG +  VY                   K KD    S     A+K++    
Sbjct: 21  EKYQKLEKVGEGTYGVVY-------------------KAKD----SQGRIVALKRI---- 53

Query: 86  NEQLEMVRE--------EIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVH 137
             +L+   E        EI +     H N++ L+D  +I  +            L+F   
Sbjct: 54  --RLDAEDEGIPSTAIREISLLKELHHPNIVSLID--VIHSERC--------LTLVFE-F 100

Query: 138 LDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHS---LEPPYAHNDVKPGNILI 194
           ++    D  KV+   K     S +    YQ+  G+ H H    L     H D+KP N+LI
Sbjct: 101 ME---KDLKKVLDENKTGLQDSQIKIYLYQLLRGVAHCHQHRIL-----HRDLKPQNLLI 152

Query: 195 TCRKGQPPLAILMDFGSARPAQSKFALGQRRYSCR 229
               G   LA   DFG AR     F +  R Y+  
Sbjct: 153 N-SDGALKLA---DFGLARA----FGIPVRSYTHE 179

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ... Length = 371

 Score = 65.9 bits (161), Expect = 1e-12
 Identities = 49/213 (23%), Positives = 85/213 (39%), Gaps = 43/213 (20%)

Query: 12  YDSVNGGGDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLS 71
           + SV  G   +    RY+ L+ +G G    V    + +     A       K+  P    
Sbjct: 11  FYSVEIGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAILERNVAIK-----KLSRPF--- 62

Query: 72  DDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAY 131
            + T+A K+            RE + +    +H+N++ LL+         +      + Y
Sbjct: 63  QNQTHA-KRAY----------RE-LVLMKCVNHKNIIGLLN----VFTPQKSLEEFQDVY 106

Query: 132 LLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIF-YQICAGLKHMHSLEPPYAHNDVKPG 190
           ++    L     +  +V+Q +       + +    YQ+  G+KH+HS      H D+KP 
Sbjct: 107 IVM--ELMDA--NLCQVIQMEL----DHERMSYLLYQMLCGIKHLHSAG--IIHRDLKPS 156

Query: 191 NILI--TCRKGQPPLAILMDFGSARPAQSKFAL 221
           NI++   C      L IL DFG AR A + F +
Sbjct: 157 NIVVKSDCT-----LKIL-DFGLARTAGTSFMM 183

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* Length = 390

 Score = 66.0 bits (161), Expect = 1e-12
 Identities = 41/216 (18%), Positives = 71/216 (32%), Gaps = 57/216 (26%)

Query: 21  VWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDG-TYAMK 79
           + +    Y IL+Q+G GG + V+ V                        L++    YA+K
Sbjct: 51  ISVKGRIYSILKQIGSGGSSKVFQV------------------------LNEKKQIYAIK 86

Query: 80  KVLIQN--NEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVH 137
            V ++   N+ L+  R EI   +     +        II +          + Y+    +
Sbjct: 87  YVNLEEADNQTLDSYRNEIAYLNKLQQHS------DKIIRLY----DYEITDQYI----Y 132

Query: 138 L-----DGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNI 192
           +     +  L    K    KK+     +    +  +   +  +H       H+D+KP N 
Sbjct: 133 MVMECGNIDLNSWLK----KKKSIDPWERKSYWKNMLEAVHTIHQHG--IVHSDLKPANF 186

Query: 193 LITCRKGQPPLAILMDFGSARPAQSKFALGQRRYSC 228
           LI    G   L    DFG A   Q       +    
Sbjct: 187 LIV--DGMLKLI---DFGIANQMQPDTTSVVKDSQV 217

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A* Length = 317

 Score = 65.3 bits (160), Expect = 1e-12
 Identities = 49/213 (23%), Positives = 79/213 (37%), Gaps = 58/213 (27%)

Query: 26  NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN 85
           ++++ L +LG G +A VY      T                          A+K+V + +
Sbjct: 5   SQFKQLEKLGNGTYATVYKGLNKTT----------------------GVYVALKEVKLDS 42

Query: 86  NEQLEM--VREEIRVSSL--FSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFP-VHLD- 139
            E      +RE   +S +    H N++ L D  +I  +            L+F  +  D 
Sbjct: 43  EEGTPSTAIRE---ISLMKELKHENIVRLYD--VIHTENK--------LTLVFEFMDNDL 89

Query: 140 GTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHS---LEPPYAHNDVKPGNILITC 196
              +D   V  T +     + V    +Q+  GL   H    L     H D+KP N+LI  
Sbjct: 90  KKYMDSRTVGNTPRG-LELNLVKYFQWQLLQGLAFCHENKIL-----HRDLKPQNLLIN- 142

Query: 197 RKGQPPLAILMDFGSARPAQSKFALGQRRYSCR 229
           ++GQ  L    DFG AR     F +    +S  
Sbjct: 143 KRGQLKLG---DFGLAR----AFGIPVNTFSSE 168

>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ... Length = 299

 Score = 64.9 bits (159), Expect = 2e-12
 Identities = 50/216 (23%), Positives = 77/216 (35%), Gaps = 67/216 (31%)

Query: 26  NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN 85
             ++ + ++GEG +  VY  +  +T                          A+KK+    
Sbjct: 3   ENFQKVEKIGEGTYGVVYKARNKLT----------------------GEVVALKKI---- 36

Query: 86  NEQLEMVRE--------EIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVH 137
             +L+   E        EI +    +H N++ LLD  +I  +           YL+F   
Sbjct: 37  --RLDTETEGVPSTAIREISLLKELNHPNIVKLLD--VIHTENK--------LYLVFE-F 83

Query: 138 LDGTLLDHAKVMQTKKE-FFSTSDVLQIFYQICAGLKHMHS---LEPPYAHNDVKPGNIL 193
           L     D  K M            +    +Q+  GL   HS   L     H D+KP N+L
Sbjct: 84  LH---QDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSHRVL-----HRDLKPQNLL 135

Query: 194 ITCRKGQPPLAILMDFGSARPAQSKFALGQRRYSCR 229
           I   +G   LA   DFG AR     F +  R Y+  
Sbjct: 136 IN-TEGAIKLA---DFGLAR----AFGVPVRTYTHE 163

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A Length = 288

 Score = 64.8 bits (159), Expect = 2e-12
 Identities = 52/215 (24%), Positives = 82/215 (38%), Gaps = 67/215 (31%)

Query: 26  NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN 85
            +Y  L ++GEG +  VY                   K ++        T+A+KK+    
Sbjct: 2   EKYHGLEKIGEGTYGVVY-------------------KAQNNY----GETFALKKI---- 34

Query: 86  NEQLEMVRE--------EIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVH 137
             +LE   E        EI +     H N++ L D  +I  K            L+F  H
Sbjct: 35  --RLEKEDEGIPSTTIREISILKELKHSNIVKLYD--VIHTKKR--------LVLVFE-H 81

Query: 138 LDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHS---LEPPYAHNDVKPGNILI 194
           LD    D  K++   +    +        Q+  G+ + H    L     H D+KP N+LI
Sbjct: 82  LD---QDLKKLLDVCEGGLESVTAKSFLLQLLNGIAYCHDRRVL-----HRDLKPQNLLI 133

Query: 195 TCRKGQPPLAILMDFGSARPAQSKFALGQRRYSCR 229
             R+G+  +A   DFG AR     F +  R+Y+  
Sbjct: 134 N-REGELKIA---DFGLARA----FGIPVRKYTHE 160

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A Length = 316

 Score = 65.0 bits (159), Expect = 2e-12
 Identities = 45/225 (20%), Positives = 72/225 (32%), Gaps = 53/225 (23%)

Query: 25  ENRYRILRQ-LGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLI 83
           E+ Y++    LGEG  A V      +T+                        YA+K +  
Sbjct: 11  EDVYQLQEDVLGEGAHARVQTCINLITSQE----------------------YAVKIIEK 48

Query: 84  QNNEQLEMVREEIRV-SSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTL 142
           Q       V  E+ +      HRN        ++ +    E   +   YL+F     G++
Sbjct: 49  QPGHIRSRVFREVEMLYQCQGHRN--------VLELIEFFEE--EDRFYLVFEKMRGGSI 98

Query: 143 LDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPP 202
           L H      K+  F+  +   +   + + L  +H+     AH D+KP NIL        P
Sbjct: 99  LSHI----HKRRHFNELEASVVVQDVASALDFLHNKG--IAHRDLKPENILCEHPNQVSP 152

Query: 203 LAILMDFGSARPAQSKFALGQRRYSCRNGLLSIVLHLSELLSCGT 247
           + I  DF           L           L           CG+
Sbjct: 153 VKI-CDFDLGS----GIKLNGDCSPISTPELLTP--------CGS 184

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II} Length = 383

 Score = 65.1 bits (159), Expect = 2e-12
 Identities = 39/216 (18%), Positives = 73/216 (33%), Gaps = 58/216 (26%)

Query: 25  ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ 84
             +Y + + LG G F  V  V +  +            +             A+KKVL  
Sbjct: 6   SKKYSLGKTLGTGSFGIVCEVFDIESGK----------RF------------ALKKVLQD 43

Query: 85  NNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLD 144
              +    RE + +  +  H N++ L+D+         +     + +       +G    
Sbjct: 44  PRYKN---RE-LDIMKVLDHVNIIKLVDYFYTTGDEEPKPPQPPDDHNKLGGKNNGVNNH 99

Query: 145 HAKVMQTKKEFFS--------------------------TSDVLQIF-YQICAGLKHMHS 177
           H  V+    +                               +++ I+ YQ+   +  +HS
Sbjct: 100 HKSVIVNPSQNKYLNVIMEYVPDTLHKVLKSFIRSGRSIPMNLISIYIYQLFRAVGFIHS 159

Query: 178 LEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSAR 213
           L     H D+KP N+L+  +     L +  DFGSA+
Sbjct: 160 LG--ICHRDIKPQNLLVNSKDNT--LKLC-DFGSAK 190

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens} Length = 444

 Score = 65.0 bits (159), Expect = 3e-12
 Identities = 35/191 (18%), Positives = 68/191 (35%), Gaps = 41/191 (21%)

Query: 25  ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ 84
              Y++  +LG+G F+ V    + +                          YA   +  +
Sbjct: 10  TEEYQLFEELGKGAFSVVRRCVKVLAGQE----------------------YAAMIINTK 47

Query: 85  --NNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTL 142
             +    + +  E R+  L  H N        I+ +  +     +   YL+F +   G L
Sbjct: 48  KLSARDHQKLEREARICRLLKHPN--------IVRLHDSISE--EGHHYLIFDLVTGGEL 97

Query: 143 LDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPP 202
            +        +E++S +D      QI   + H H +     H ++KP N+L+  +     
Sbjct: 98  FEDI----VAREYYSEADASHCIQQILEAVLHCHQMG--VVHRNLKPENLLLASKLKGAA 151

Query: 203 LAILMDFGSAR 213
           + +  DFG A 
Sbjct: 152 VKL-ADFGLAI 161

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X* Length = 348

 Score = 64.8 bits (158), Expect = 3e-12
 Identities = 35/195 (17%), Positives = 64/195 (32%), Gaps = 38/195 (19%)

Query: 26  NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHL-SDDGTYAMKKVLIQ 84
           N YRI+R L +G F  + L ++         +   A K  + S L             I 
Sbjct: 31  NDYRIIRTLNQGKFNKIILCEKD--------NKFYALKKYEKSLLEKKRDFTKSNNDKIS 82

Query: 85  NNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYL---------LFP 135
              + +  + E+++ +   +   L      II              Y+         +  
Sbjct: 83  IKSKYDDFKNELQIITDIKNEYCLTC--EGIITNYDE--------VYIIYEYMENDSILK 132

Query: 136 VHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILIT 195
                       + +    F     +  I   +     ++H+ +    H DVKP NIL+ 
Sbjct: 133 F-----DEYFFVLDKNYTCFIPIQVIKCIIKSVLNSFSYIHNEKNIC-HRDVKPSNILMD 186

Query: 196 CRKGQPPLAILMDFG 210
            + G+  L+   DFG
Sbjct: 187 -KNGRVKLS---DFG 197

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens} Length = 320

 Score = 64.6 bits (158), Expect = 3e-12
 Identities = 45/217 (20%), Positives = 81/217 (37%), Gaps = 53/217 (24%)

Query: 14  SVNGGGDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDD 73
           S+N     +   +RY  L+ LG GG   V+   +               +V         
Sbjct: 1   SMNI--HGFDLGSRYMDLKPLGCGGNGLVFSAVDNDCDK----------RV--------- 39

Query: 74  GTYAMKKVLIQNNEQLEMVREEIRVSSLFSHRNLLPLLD----HAIIAVKANQEGSWKHE 129
              A+KK+++ + + ++    EI++     H N++ + +                +  + 
Sbjct: 40  ---AIKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVFEILGPSGSQLTDDVGSLTELNS 96

Query: 130 AYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIF-YQICAGLKHMHSLEPPYA---HN 185
            Y++       T  D A V++         +  ++F YQ+  GLK++HS     A   H 
Sbjct: 97  VYIVQE--YMET--DLANVLEQGP---LLEEHARLFMYQLLRGLKYIHS-----ANVLHR 144

Query: 186 DVKPGNILI---TCRKGQPPLAILMDFGSARPAQSKF 219
           D+KP N+ I           L I  DFG AR     +
Sbjct: 145 DLKPANLFINTEDLV-----LKIG-DFGLARIMDPHY 175

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A Length = 351

 Score = 64.2 bits (157), Expect = 4e-12
 Identities = 32/194 (16%), Positives = 58/194 (29%), Gaps = 40/194 (20%)

Query: 25  ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMK----- 79
           E+ Y +   +G+G F+ V       T                         +A+K     
Sbjct: 23  EDVYELCEVIGKGPFSVVRRCINRETGQ----------------------QFAVKIVDVA 60

Query: 80  KVLIQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLD 139
           K         E ++ E  +  +  H +        I+ +            Y++F     
Sbjct: 61  KFTSSPGLSTEDLKREASICHMLKHPH--------IVELLETYSS--DGMLYMVFEFMDG 110

Query: 140 GTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKG 199
             L             +S +       QI   L++ H       H DVKP  +L+  ++ 
Sbjct: 111 ADLCFEIVKRADAGFVYSEAVASHYMRQILEALRYCHDNN--IIHRDVKPHCVLLASKEN 168

Query: 200 QPPLAILMDFGSAR 213
             P+ +   FG A 
Sbjct: 169 SAPVKL-GGFGVAI 181

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ... Length = 284

 Score = 63.4 bits (155), Expect = 5e-12
 Identities = 42/194 (21%), Positives = 68/194 (35%), Gaps = 40/194 (20%)

Query: 26  NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN 85
           + + I R LG+G F  VYL +E            +A KV             + K  ++ 
Sbjct: 14  DDFDIGRPLGKGKFGNVYLAREKQNKFI------MALKV-------------LFKSQLEK 54

Query: 86  NEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDH 145
                 +R EI + S   H N+L +  +     +           YL+      G L   
Sbjct: 55  EGVEHQLRREIEIQSHLRHPNILRM--YNYFHDRKR--------IYLMLEFAPRGELYKE 104

Query: 146 AKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAI 205
            +    K   F          ++   L + H  +    H D+KP N+L+   KG+  +A 
Sbjct: 105 LQ----KHGRFDEQRSATFMEELADALHYCHERK--VIHRDIKPENLLMG-YKGELKIA- 156

Query: 206 LMDFG-SARPAQSK 218
             DFG S      +
Sbjct: 157 --DFGWSVHAPSLR 168

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A* Length = 299

 Score = 63.5 bits (155), Expect = 5e-12
 Identities = 33/197 (16%), Positives = 64/197 (32%), Gaps = 51/197 (25%)

Query: 23  INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVL 82
           I ++     + LG G    V  +    T +                       +A+K + 
Sbjct: 15  IIDDYKVTSQVLGLGINGKVLQIFNKRTQEK----------------------FALKML- 51

Query: 83  IQNNEQLEMVREEIRVSSLFSHRNLLPLLDHA-IIAVKANQEGSWKHEAYLLFPVHL--- 138
               +     R E+ +                 I+ +    E  +         + +   
Sbjct: 52  ----QDCPKARREVEL--------HWRASQCPHIVRIVDVYENLYAGRKC----LLIVME 95

Query: 139 ---DGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILIT 195
               G L    ++     + F+  +  +I   I   ++++HS+    AH DVKP N+L T
Sbjct: 96  CLDGGELFS--RIQDRGDQAFTEREASEIMKSIGEAIQYLHSIN--IAHRDVKPENLLYT 151

Query: 196 CRKGQPPLAILMDFGSA 212
            ++    L +  DFG A
Sbjct: 152 SKRPNAILKL-TDFGFA 167

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A* Length = 432

 Score = 64.0 bits (156), Expect = 6e-12
 Identities = 45/207 (21%), Positives = 75/207 (36%), Gaps = 48/207 (23%)

Query: 18  GGDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYA 77
           G       + Y I   +G G + YVYL  +  T    A       KV       +D    
Sbjct: 18  GIKNVHVPDNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIK-----KVNRM---FEDLIDC 69

Query: 78  MKKVLIQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVH 137
            K++L          R EI + +      ++ L D  +I      +     E Y++    
Sbjct: 70  -KRIL----------R-EITILNRLKSDYIIRLYD--LIIPDDLLK---FDELYIVL--E 110

Query: 138 LDGTLLDHAKVMQTKKEFFSTSDVLQ-IFYQICAGLKHMHSLEPPYA---HNDVKPGNIL 193
           +  +  D  K+ +T      T + ++ I Y +  G   +H      +   H D+KP N L
Sbjct: 111 IADS--DLKKLFKTPIFL--TEEHIKTILYNLLLGENFIHE-----SGIIHRDLKPANCL 161

Query: 194 IT--CRKGQPPLAILMDFGSARPAQSK 218
           +   C      + +  DFG AR   S+
Sbjct: 162 LNQDCS-----VKVC-DFGLARTINSE 182

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* Length = 287

 Score = 63.1 bits (154), Expect = 7e-12
 Identities = 38/214 (17%), Positives = 72/214 (33%), Gaps = 48/214 (22%)

Query: 10  ALYDSVNGGGDVW-INENRYRILRQLGEGGFAYVYLVK-----ETVTTDASAASGGLANK 63
           A+  S      +  + +N     +Q+G+GGF  V+  +       V           A K
Sbjct: 2   AMGGSEFPKSRLPTLADNEIEYEKQIGKGGFGLVHKGRLVKDKSVV-----------AIK 50

Query: 64  VKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQE 123
                    +             E+ +  + E+ + S  +H N++ L             
Sbjct: 51  SLILGDSEGETEMI---------EKFQEFQREVFIMSNLNHPNIVKLY------------ 89

Query: 124 GSWKHEAYL---LFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEP 180
           G   +   +     P    G L      +  K      S  L++   I  G+++M +  P
Sbjct: 90  GLMHNPPRMVMEFVP---CGDLYH---RLLDKAHPIKWSVKLRLMLDIALGIEYMQNQNP 143

Query: 181 PYAHNDVKPGNILITCRKGQPPLAI-LMDFGSAR 213
           P  H D++  NI +       P+   + DFG ++
Sbjct: 144 PIVHRDLRSPNIFLQSLDENAPVCAKVADFGLSQ 177

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii} Length = 458

 Score = 63.7 bits (155), Expect = 7e-12
 Identities = 44/214 (20%), Positives = 83/214 (38%), Gaps = 54/214 (25%)

Query: 14  SVNGGGDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDD 73
           S+      W   +RY I   +G G + +V    + +              V         
Sbjct: 41  SMPRPHSDWQIPDRYEIRHLIGTGSYGHVCEAYDKLE----------KRVV--------- 81

Query: 74  GTYAMKKV-LIQNNEQL--EMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEA 130
              A+KK+  +  +      ++R EI + +  +H +++ +LD  I+  K  ++     E 
Sbjct: 82  ---AIKKILRVFEDLIDCKRILR-EIAILNRLNHDHVVKVLD--IVIPKDVEK---FDEL 132

Query: 131 YLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIF-YQICAGLKHMHSLEPPYA---HND 186
           Y++    +  +  D  K+ +T      T   ++   Y +  G+K++HS     A   H D
Sbjct: 133 YVVL--EIADS--DFKKLFRTPVYL--TELHIKTLLYNLLVGVKYVHS-----AGILHRD 181

Query: 187 VKPGNILIT--CRKGQPPLAILMDFGSARPAQSK 218
           +KP N L+   C      + +  DFG AR     
Sbjct: 182 LKPANCLVNQDCS-----VKVC-DFGLARTVDYP 209

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A Length = 325

 Score = 63.1 bits (154), Expect = 9e-12
 Identities = 37/187 (19%), Positives = 65/187 (34%), Gaps = 43/187 (22%)

Query: 28  YRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNE 87
               + LGEG F+         +  A                      +A+K +   +  
Sbjct: 13  DLKDKPLGEGSFSICRKCVHKKSNQA----------------------FAVKII---SKR 47

Query: 88  QLEMVREEIRV-SSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHA 146
                ++EI        H N        I+ +        +   +L+  +   G L +  
Sbjct: 48  MEANTQKEITALKLCEGHPN--------IVKLHEVFHD--QLHTFLVMELLNGGELFERI 97

Query: 147 KVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAIL 206
                KK+ FS ++   I  ++ + + HMH +     H D+KP N+L T       + I 
Sbjct: 98  ----KKKKHFSETEASYIMRKLVSAVSHMHDVG--VVHRDLKPENLLFTDENDNLEIKI- 150

Query: 207 MDFGSAR 213
           +DFG AR
Sbjct: 151 IDFGFAR 157

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A Length = 342

 Score = 62.7 bits (153), Expect = 1e-11
 Identities = 38/190 (20%), Positives = 68/190 (35%), Gaps = 43/190 (22%)

Query: 25  ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ 84
            + Y +   +G G ++         T                         +A+K +   
Sbjct: 21  TDGYEVKEDIGVGSYSVCKRCIHKATNME----------------------FAVKII--- 55

Query: 85  NNEQLEMVREEIRVSSLFSHRNLLPLLDHA-IIAVKANQEGSWKHEAYLLFPVHLDGTLL 143
            ++      EEI +        LL    H  II +K   +       Y++  +   G LL
Sbjct: 56  -DKSKRDPTEEIEI--------LLRYGQHPNIITLKDVYDD--GKYVYVVTELMKGGELL 104

Query: 144 DHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPL 203
           D       +++FFS  +   + + I   ++++H+      H D+KP NIL     G P  
Sbjct: 105 DKI----LRQKFFSEREASAVLFTITKTVEYLHAQG--VVHRDLKPSNILYVDESGNPES 158

Query: 204 AILMDFGSAR 213
             + DFG A+
Sbjct: 159 IRICDFGFAK 168

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp} Length = 294

 Score = 62.2 bits (152), Expect = 1e-11
 Identities = 46/198 (23%), Positives = 70/198 (35%), Gaps = 51/198 (25%)

Query: 26  NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGL----ANKVKDPSHLSDDGTYAMKKV 81
            RY+I+ +LG GG + VYL ++T+          L    A K        +         
Sbjct: 11  ERYKIVDKLGGGGMSTVYLAEDTI----------LNIKVAIKAIFI-PPREKEET----- 54

Query: 82  LIQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPV--HLD 139
                  L+    E+  SS  SH+N++ ++D                  YL   V  +++
Sbjct: 55  -------LKRFEREVHNSSQLSHQNIVSMIDV----------DEEDDCYYL---VMEYIE 94

Query: 140 GTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKG 199
           G  L             S    +    QI  G+KH H +     H D+KP NILI     
Sbjct: 95  GPTL---SEYIESHGPLSVDTAINFTNQILDGIKHAHDMR--IVHRDIKPQNILID-SNK 148

Query: 200 QPPLAILMDFGSARPAQS 217
                 + DFG A+    
Sbjct: 149 T---LKIFDFGIAKALSE 163

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A* Length = 434

 Score = 62.9 bits (153), Expect = 2e-11
 Identities = 37/205 (18%), Positives = 63/205 (30%), Gaps = 58/205 (28%)

Query: 25  ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ 84
           +N     + LG G    V                                  A+K++LI 
Sbjct: 14  KNLVVSEKILGYGSSGTVVFQ-----------------------GSFQGRPVAVKRMLID 50

Query: 85  NNEQLEMVREEIRVSSLFSHRNLLPLLDHA-IIAVKANQEGSWKHEAYL---LFPVHLDG 140
                ++   EI++        L    DH  +I    ++        Y+   L     + 
Sbjct: 51  F---CDIALMEIKL--------LTESDDHPNVIRYYCSETT--DRFLYIALEL----CNL 93

Query: 141 TLLD---HAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCR 197
            L D      V     +     + + +  QI +G+ H+HSL+    H D+KP NIL++  
Sbjct: 94  NLQDLVESKNVSDENLKLQKEYNPISLLRQIASGVAHLHSLK--IIHRDLKPQNILVSTS 151

Query: 198 KGQPPLAILM---------DFGSAR 213
                              DFG  +
Sbjct: 152 SRFTADQQTGAENLRILISDFGLCK 176

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3o71_A 3r63_A 3c9w_A* 2y9q_A* 3sa0_A* 1wzy_A* 2e14_A* 1tvo_A* 2ojg_A* 2oji_A* ... Length = 364

 Score = 62.3 bits (152), Expect = 2e-11
 Identities = 55/207 (26%), Positives = 88/207 (42%), Gaps = 54/207 (26%)

Query: 19  GDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAM 78
           G V+    RY  L  +GEG +  V    + +             +V            A+
Sbjct: 20  GQVFDVGPRYTNLSYIGEGAYGMVCSAYDNLN----------KVRV------------AI 57

Query: 79  KKVLIQNNEQL--EMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPV 136
           KK+    ++      +R EI++   F H N++ + D  II     ++     + Y++   
Sbjct: 58  KKISPFEHQTYCQRTLR-EIKILLRFRHENIIGIND--IIRAPTIEQ---MKDVYIVQ-- 109

Query: 137 HLDGTLLDHAKVMQTKKEFFSTSDVLQIF-YQICAGLKHMHSLEPPYA---HNDVKPGNI 192
            L  T  D  K+++T+     ++D +  F YQI  GLK++HS     A   H D+KP N+
Sbjct: 110 DLMET--DLYKLLKTQH---LSNDHICYFLYQILRGLKYIHS-----ANVLHRDLKPSNL 159

Query: 193 LI--TCRKGQPPLAILMDFGSARPAQS 217
           L+  TC      L I  DFG AR A  
Sbjct: 160 LLNTTCD-----LKIC-DFGLARVADP 180

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens} Length = 335

 Score = 62.0 bits (151), Expect = 2e-11
 Identities = 37/187 (19%), Positives = 62/187 (33%), Gaps = 35/187 (18%)

Query: 27  RYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNN 86
           +Y  +  LG G F +V+   +               K      + +D            +
Sbjct: 25  KYSTMSPLGSGAFGFVWTAVDKEKNKEVVV------KFIKKEKVLEDC--------WIED 70

Query: 87  EQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGT-LLDH 145
            +L  V  EI + S   H N++ +LD     +  N     +    L+   H  G  L   
Sbjct: 71  PKLGKVTLEIAILSRVEHANIIKVLD-----IFEN-----QGFFQLVMEKHGSGLDLFAF 120

Query: 146 AKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAI 205
                 +           IF Q+ + + ++   +    H D+K  NI+I        L  
Sbjct: 121 I----DRHPRLDEPLASYIFRQLVSAVGYLRLKD--IIHRDIKDENIVIA-EDFTIKLI- 172

Query: 206 LMDFGSA 212
             DFGSA
Sbjct: 173 --DFGSA 177

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A* Length = 329

 Score = 61.5 bits (150), Expect = 3e-11
 Identities = 51/216 (23%), Positives = 85/216 (39%), Gaps = 64/216 (29%)

Query: 26  NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN 85
           +RYR + +LGEG +  VY   +TVT                      + T A+K++ +++
Sbjct: 34  DRYRRITKLGEGTYGEVYKAIDTVT----------------------NETVAIKRIRLEH 71

Query: 86  NEQ---LEMVREEIRVSSL--FSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDG 140
            E+      +RE   VS L    HRN++ L    +I              +L+F  + + 
Sbjct: 72  EEEGVPGTAIRE---VSLLKELQHRNIIELKS--VIHHNHR--------LHLIFE-YAE- 116

Query: 141 TLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHS---LEPPYAHNDVKPGNILITC- 196
              D  K M    +  S   +    YQ+  G+   HS   L     H D+KP N+L++  
Sbjct: 117 --NDLKKYMDKNPD-VSMRVIKSFLYQLINGVNFCHSRRCL-----HRDLKPQNLLLSVS 168

Query: 197 ---RKGQPPLAILMDFGSARPAQSKFALGQRRYSCR 229
                    +    DFG AR     F +  R+++  
Sbjct: 169 DASETPVLKIG---DFGLAR----AFGIPIRQFTHE 197

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C Length = 400

 Score = 61.3 bits (149), Expect = 4e-11
 Identities = 33/198 (16%), Positives = 64/198 (32%), Gaps = 51/198 (25%)

Query: 23  INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVL 82
           I ++     + LG G    V  +    T +                       +A+K + 
Sbjct: 59  IIDDYKVTSQVLGLGINGKVLQIFNKRTQEK----------------------FALKML- 95

Query: 83  IQNNEQLEMVREEIRVSSLFSHRNLLPLLDHA-IIAVKANQEGSWKHEAYLLFPVHL--- 138
               +     R E+ +                 I+ +    E  +         + +   
Sbjct: 96  ----QDCPKARREVEL--------HWRASQCPHIVRIVDVYENLYAGRKC----LLIVME 139

Query: 139 ---DGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILIT 195
               G L     +     + F+  +  +I   I   ++++HS+    AH DVKP N+L T
Sbjct: 140 CLDGGELFSR--IQDRGDQAFTEREASEIMKSIGEAIQYLHSIN--IAHRDVKPENLLYT 195

Query: 196 CRKGQPPLAILMDFGSAR 213
            ++    L +  DFG A+
Sbjct: 196 SKRPNAILKL-TDFGFAK 212

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A Length = 373

 Score = 60.9 bits (148), Expect = 6e-11
 Identities = 48/208 (23%), Positives = 81/208 (38%), Gaps = 49/208 (23%)

Query: 19  GDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAM 78
           G+ + +  RY ++R+LG G F+ V+L K+ V                       +   AM
Sbjct: 13  GEPYKD-ARYILVRKLGWGHFSTVWLAKDMVN----------------------NTHVAM 49

Query: 79  KKVLIQNNEQ-LEMVREEIRV-----------SSLFSHRNLLPLLDHAIIAVKANQEGSW 126
           K  +++ ++   E   +EI++                  ++L LLDH        +  + 
Sbjct: 50  K--IVRGDKVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNH-----KGPNG 102

Query: 127 KHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHND 186
            H   ++F V L   LL   K  + +        V QI  Q+  GL +MH       H D
Sbjct: 103 VHVV-MVFEV-LGENLLALIK--KYEHRGIPLIYVKQISKQLLLGLDYMHR-RCGIIHTD 157

Query: 187 VKPGNILITCRKGQPPLAI--LMDFGSA 212
           +KP N+L+        L    + D G+A
Sbjct: 158 IKPENVLMEIVDSPENLIQIKIADLGNA 185

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A* Length = 311

 Score = 60.3 bits (147), Expect = 6e-11
 Identities = 39/207 (18%), Positives = 65/207 (31%), Gaps = 65/207 (31%)

Query: 26  NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGL----ANKVKDPSHLSDDGTYAMKKV 81
           +RY +   LG GG + V+L ++                 A KV     L+ D ++     
Sbjct: 12  DRYELGEILGFGGMSEVHLARDLR----------DHRDVAVKVLRA-DLARDPSF----- 55

Query: 82  LIQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGT 141
                      R E + ++  +H  ++ + D          E       Y+         
Sbjct: 56  -------YLRFRREAQNAAALNHPAIVAVYDTG------EAETPAGPLPYI--------- 93

Query: 142 LLDHAKVM-----QTKKEF------FSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPG 190
                 VM      T ++        +    +++    C  L   H       H DVKP 
Sbjct: 94  ------VMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALNFSHQNG--IIHRDVKPA 145

Query: 191 NILITCRKGQPPLAILMDFGSARPAQS 217
           NI+I+          +MDFG AR    
Sbjct: 146 NIMIS-ATNA---VKVMDFGIARAIAD 168

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis} Length = 309

 Score = 60.0 bits (146), Expect = 1e-10
 Identities = 45/189 (23%), Positives = 70/189 (37%), Gaps = 43/189 (22%)

Query: 27  RYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNN 86
            YR+ R +G GG   VY  ++TV          +A K+     LS D  +  +       
Sbjct: 35  PYRLRRLVGRGGMGDVYEAEDTVRERI------VALKLMSE-TLSSDPVFRTR------- 80

Query: 87  EQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPV--HLDGTLLD 144
               M RE      L    +++P+ D           G    + Y+       ++G  L 
Sbjct: 81  ----MQREARTAGRL-QEPHVVPIHDF----------GEIDGQLYV---DMRLINGVDL- 121

Query: 145 HAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLA 204
               M  ++   +    + I  QI + L   H+      H DVKP NIL++        A
Sbjct: 122 --AAMLRRQGPLAPPRAVAIVRQIGSALDAAHAAG--ATHRDVKPENILVS-ADDF---A 173

Query: 205 ILMDFGSAR 213
            L+DFG A 
Sbjct: 174 YLVDFGIAS 182

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A* Length = 353

 Score = 60.0 bits (146), Expect = 1e-10
 Identities = 48/220 (21%), Positives = 83/220 (37%), Gaps = 54/220 (24%)

Query: 21  VWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKK 80
           V+   + +++   LGEG +  V       T             V            A+KK
Sbjct: 6   VYNISSDFQLKSLLGEGAYGVVCSATHKPT----------GEIV------------AIKK 43

Query: 81  VLIQNNEQL--EMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHL 138
           +   +        +RE I++   F H N++ + +  I    + +     +E Y++    L
Sbjct: 44  IEPFDKPLFALRTLRE-IKILKHFKHENIITIFN--IQRPDSFEN---FNEVYIIQ--EL 95

Query: 139 DGTLLDHAKVMQTKKEFFSTSDVLQIF-YQICAGLKHMHSLEPPYA---HNDVKPGNILI 194
             T  D  +V+ T+     + D +Q F YQ    +K +H      +   H D+KP N+LI
Sbjct: 96  MQT--DLHRVISTQM---LSDDHIQYFIYQTLRAVKVLHG-----SNVIHRDLKPSNLLI 145

Query: 195 --TCRKGQPPLAILMDFGSARPAQSKFALGQRRYSCRNGL 232
              C      L +  DFG AR      A        ++G+
Sbjct: 146 NSNCD-----LKVC-DFGLARIIDESAADNSEPTGQQSGM 179

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A* Length = 336

 Score = 59.3 bits (144), Expect = 2e-10
 Identities = 34/193 (17%), Positives = 63/193 (32%), Gaps = 42/193 (21%)

Query: 25  ENRYRILRQ-LGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLI 83
            + Y++ +Q LG G    V       T                          A+K +  
Sbjct: 27  TDDYQLSKQVLGLGVNGKVLECFHRRTGQK----------------------CALKLL-- 62

Query: 84  QNNEQLEMVREEIRV-SSLFSHRNLLPLLDHAIIAVKANQEGSWKHEA-YLLFPVHLDGT 141
                    R+E+          +++ +LD         +          ++      G 
Sbjct: 63  ---YDSPKARQEVDHHWQASGGPHIVCILD-------VYENMHHGKRCLLIIMECMEGGE 112

Query: 142 LLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQP 201
           L     + +   + F+  +  +I   I   ++ +HS     AH DVKP N+L T ++   
Sbjct: 113 LFSR--IQERGDQAFTEREAAEIMRDIGTAIQFLHSHN--IAHRDVKPENLLYTSKEKDA 168

Query: 202 PLAILMDFGSARP 214
            L +  DFG A+ 
Sbjct: 169 VLKL-TDFGFAKE 180

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681

 Score = 59.1 bits (143), Expect = 3e-10
 Identities = 31/192 (16%), Positives = 70/192 (36%), Gaps = 46/192 (23%)

Query: 26  NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN 85
            +Y +   +  GG  ++YL  +                                K L+ +
Sbjct: 80  GQYEVKGCIAHGGLGWIYLALDRNVNGRPVVL----------------------KGLVHS 117

Query: 86  NEQ--LEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPV--HLDGT 141
            +     M   E +  +   H +++ + +          E + +H   + + V  ++ G 
Sbjct: 118 GDAEAQAMAMAERQFLAEVVHPSIVQIFNFV--------EHTDRHGDPVGYIVMEYVGGQ 169

Query: 142 LLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQP 201
            L      ++K +    ++ +    +I   L ++HS+     +ND+KP NI++T  + Q 
Sbjct: 170 SLK-----RSKGQKLPVAEAIAYLLEILPALSYLHSI--GLVYNDLKPENIMLT--EEQ- 219

Query: 202 PLAILMDFGSAR 213
               L+D G+  
Sbjct: 220 --LKLIDLGAVS 229

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 3fpq_A Length = 290

 Score = 57.7 bits (140), Expect = 4e-10
 Identities = 41/197 (20%), Positives = 68/197 (34%), Gaps = 41/197 (20%)

Query: 28  YRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLI--QN 85
            +   ++G G F  VY   +T TT                         A  ++      
Sbjct: 28  LKFDIEIGRGSFKTVYKGLDTETTV----------------------EVAWCELQDRKLT 65

Query: 86  NEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHL--DGTLL 143
             + +  +EE  +     H N        I+    + E + K +  ++    L   GTL 
Sbjct: 66  KSERQRFKEEAEMLKGLQHPN--------IVRFYDSWESTVKGKKCIVLVTELMTSGTLK 117

Query: 144 DHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPL 203
            + K    + +      +     QI  GL+ +H+  PP  H D+K  NI IT   G   +
Sbjct: 118 TYLK----RFKVMKIKVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFITGPTGSVKI 173

Query: 204 AILMDFGSARPAQSKFA 220
               D G A   ++ FA
Sbjct: 174 G---DLGLATLKRASFA 187

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A* Length = 298

 Score = 57.7 bits (140), Expect = 5e-10
 Identities = 38/190 (20%), Positives = 65/190 (34%), Gaps = 34/190 (17%)

Query: 25  ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ 84
              Y     LG G  + V       T    A       K+ D +         ++++   
Sbjct: 16  YENYEPKEILGRGVSSVVRRCIHKPTCKEYAV------KIIDVTGGGSFSAEEVQEL--- 66

Query: 85  NNEQLEMVREEIRV-SSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLL 143
                E   +E+ +   +  H N        II +K   E       +L+F +   G L 
Sbjct: 67  ----REATLKEVDILRKVSGHPN--------IIQLKDTYET--NTFFFLVFDLMKKGELF 112

Query: 144 DHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPL 203
           D+     T+K   S  +  +I   +   +  +H L     H D+KP NIL+        +
Sbjct: 113 DYL----TEKVTLSEKETRKIMRALLEVICALHKLN--IVHRDLKPENILL---DDDMNI 163

Query: 204 AILMDFGSAR 213
            +  DFG + 
Sbjct: 164 KL-TDFGFSC 172

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A* Length = 302

 Score = 57.3 bits (139), Expect = 6e-10
 Identities = 44/202 (21%), Positives = 75/202 (37%), Gaps = 47/202 (23%)

Query: 25  ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ 84
              + I+ +LG+G F  VY  K   T                          A K +  +
Sbjct: 18  NEVWEIVGELGDGAFGKVYKAKNKET----------------------GALAAAKVIETK 55

Query: 85  NNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHL--DGTL 142
           + E+LE    EI + +   H  ++ LL            G++ H+  L   +     G +
Sbjct: 56  SEEELEDYIVEIEILATCDHPYIVKLL------------GAYYHDGKLWIMIEFCPGGAV 103

Query: 143 LDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPP 202
                +M       +   +  +  Q+   L  +HS      H D+K GN+L+T  +G   
Sbjct: 104 DA---IMLELDRGLTEPQIQVVCRQMLEALNFLHSKR--IIHRDLKAGNVLMT-LEGDIR 157

Query: 203 LAILMDFGSARPAQSKFALGQR 224
           LA   DFG +  A++   L +R
Sbjct: 158 LA---DFGVS--AKNLKTLQKR 174

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A Length = 336

 Score = 57.2 bits (137), Expect = 8e-10
 Identities = 24/196 (12%), Positives = 55/196 (28%), Gaps = 33/196 (16%)

Query: 20  DVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMK 79
              +   + +   ++GEG F  V+      T  A          +        +G++   
Sbjct: 14  SHCLPTEKLQRCEKIGEGVFGEVFQTIADHTPVA-------IKIIAIEGPDLVNGSHQKT 66

Query: 80  KVLIQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKA------------NQEGSW- 126
              I     +      +           + L     +                + +GS  
Sbjct: 67  FEEILPEIIISKELSLLSGEVCNRTEGFIGLNSVHCVQGSYPPLLLKAWDHYNSTKGSAN 126

Query: 127 -------KHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLE 179
                    + +++      G  L+       + +  S +    I +Q+ A L    +  
Sbjct: 127 DRPDFFKDDQLFIVLEFEFGGIDLEQ-----MRTKLSSLATAKSILHQLTASLAVAEA-S 180

Query: 180 PPYAHNDVKPGNILIT 195
             + H D+  GN+L+ 
Sbjct: 181 LRFEHRDLHWGNVLLK 196

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A Length = 286

 Score = 56.7 bits (137), Expect = 9e-10
 Identities = 28/202 (13%), Positives = 52/202 (25%), Gaps = 48/202 (23%)

Query: 26  NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN 85
            RYR+L   G       +   +T           +A    DP  +  D            
Sbjct: 31  GRYRLLIFHGGVPPLQFWQALDTALDRQ------VALTFVDPQGVLPD------------ 72

Query: 86  NEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVH--LDGTLL 143
            + L+         S      +  +LD              +    +   V   + G  L
Sbjct: 73  -DVLQETLSRTLRLSRIDKPGVARVLDV----------VHTRAGGLV---VAEWIRGGSL 118

Query: 144 DHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPL 203
              +V  T     S    ++    + A     H      A +   P  + ++   G    
Sbjct: 119 --QEVADTS---PSPVGAIRAMQSLAAAADAAH--RAGVALSIDHPSRVRVS-IDGD--- 167

Query: 204 AILMDFGSARPAQSK---FALG 222
            +L    +   A  +     +G
Sbjct: 168 VVLAYPATMPDANPQDDIRGIG 189

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A Length = 365

 Score = 56.3 bits (136), Expect = 2e-09
 Identities = 37/190 (19%), Positives = 64/190 (33%), Gaps = 35/190 (18%)

Query: 25  ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ 84
             +Y     +G G  + V       T    A       K+ + +        A +    Q
Sbjct: 93  YQKYDPKDVIGRGVSSVVRRCVHRATGHEFAV------KIMEVT--------AERLSPEQ 138

Query: 85  NNEQLEMVREEIRV-SSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLL 143
             E  E  R E  +   +  H +        II +  + E       +L+F +   G L 
Sbjct: 139 LEEVREATRRETHILRQVAGHPH--------IITLIDSYES--SSFMFLVFDLMRKGELF 188

Query: 144 DHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPL 203
           D+     T+K   S  +   I   +   +  +H+      H D+KP NIL+        +
Sbjct: 189 DYL----TEKVALSEKETRSIMRSLLEAVSFLHANN--IVHRDLKPENILL---DDNMQI 239

Query: 204 AILMDFGSAR 213
            +  DFG + 
Sbjct: 240 RL-SDFGFSC 248

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 2qlu_A* Length = 322

 Score = 56.3 bits (136), Expect = 2e-09
 Identities = 41/232 (17%), Positives = 70/232 (30%), Gaps = 62/232 (26%)

Query: 14  SVNGGGDVW-INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSD 72
            V+ G +         ++L     G F  V+                             
Sbjct: 11  GVDLGTENLYFQSMPLQLLEVKARGRFGCVW-------------------------KAQL 45

Query: 73  DGTYAMKKVLIQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYL 132
              Y   K+    ++Q      E+       H N+L  +        A + G+       
Sbjct: 46  LNEYVAVKIFPIQDKQSWQNEYEVYSLPGMKHENILQFIG-------AEKRGTSVDVDLW 98

Query: 133 LFPV---HLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHS--------LEPP 181
           L  +   H  G+L D       K    S +++  I   +  GL ++H          +P 
Sbjct: 99  L--ITAFHEKGSLSDF-----LKANVVSWNELCHIAETMARGLAYLHEDIPGLKDGHKPA 151

Query: 182 YAHNDVKPGNILITCRKGQPPLAILMDFGSAR-------PAQSKFALGQRRY 226
            +H D+K  N+L+        +A   DFG A           +   +G RRY
Sbjct: 152 ISHRDIKSKNVLLK-NNLTACIA---DFGLALKFEAGKSAGDTHGQVGTRRY 199

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} Length = 336

 Score = 56.0 bits (135), Expect = 2e-09
 Identities = 26/142 (18%), Positives = 49/142 (34%), Gaps = 23/142 (16%)

Query: 80  KVLIQNNEQLEMVRE-EIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHL 138
           KV    N Q   + E  I    L  H N+        I          + E  L+   + 
Sbjct: 42  KVFSFANRQ-NFINEKNIYRVPLMEHDNIARF-----IVGDERVTADGRMEYLLVMEYYP 95

Query: 139 DGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHS-------LEPPYAHNDVKPGN 191
           +G+L  +                 ++ + +  GL ++H+        +P  +H D+   N
Sbjct: 96  NGSLXKY-----LSLHTSDWVSSCRLAHSVTRGLAYLHTELPRGDHYKPAISHRDLNSRN 150

Query: 192 ILITCRKGQPPLAILMDFGSAR 213
           +L+    G   ++   DFG + 
Sbjct: 151 VLVK-NDGTCVIS---DFGLSM 168

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ... Length = 320

 Score = 55.8 bits (135), Expect = 2e-09
 Identities = 41/191 (21%), Positives = 61/191 (31%), Gaps = 42/191 (21%)

Query: 27  RYRILRQLGEGGFAYVYLVKETVTTDASAASGGL--ANKVKDPSHLSDDGTYAMKKVLIQ 84
           +Y++   LG GGF  VY                L  A K  +   +SD G          
Sbjct: 44  QYQVGPLLGSGGFGSVYSGIRVSD--------NLPVAIKHVEKDRISDWGELPN------ 89

Query: 85  NNEQLEMVREEIRVSSLFSHR--NLLPLLDHAIIAVKANQEGSWKHEAYLLFP-VHLDGT 141
                  V  E+ +    S     ++ LLD                   L+         
Sbjct: 90  ----GTRVPMEVVLLKKVSSGFSGVIRLLD-----WFER-----PDSFVLILERPEPVQD 135

Query: 142 LLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQP 201
           L D      T++           F+Q+   ++H H+      H D+K  NILI   +G+ 
Sbjct: 136 LFDFI----TERGALQEELARSFFWQVLEAVRHCHNCG--VLHRDIKDENILIDLNRGEL 189

Query: 202 PLAILMDFGSA 212
            L    DFGS 
Sbjct: 190 KLI---DFGSG 197

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens} Length = 298

 Score = 55.0 bits (133), Expect = 4e-09
 Identities = 33/174 (18%), Positives = 67/174 (38%), Gaps = 19/174 (10%)

Query: 26  NRYRILRQLGEGGFAYVYLVKETVTTDASA----ASGGLANKVKDPSHLSDDGTYAMKKV 81
           N+Y +  ++G+G +  V L          A    +   L  +   P      GT      
Sbjct: 13  NQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGG 72

Query: 82  LIQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGT 141
            IQ    +E V +EI +     H N++ L++  ++      +   +   Y++F +   G 
Sbjct: 73  CIQPRGPIEQVYQEIAILKKLDHPNVVKLVE--VL------DDPNEDHLYMVFELVNQGP 124

Query: 142 LLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILIT 195
           +++            S       F  +  G++++H  +    H D+KP N+L+ 
Sbjct: 125 VME--VPTLKP---LSEDQARFYFQDLIKGIEYLHYQK--IIHRDIKPSNLLVG 171

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens} Length = 312

 Score = 54.6 bits (132), Expect = 6e-09
 Identities = 44/193 (22%), Positives = 63/193 (32%), Gaps = 44/193 (22%)

Query: 27  RYRILRQLGEGGFAYVYLVKETVTTDASAASGGL--ANKVKDPSHLSDDGTYAMKKVLIQ 84
            YR+   LG+GGF  V+                L  A KV   + +              
Sbjct: 32  EYRLGPLLGKGGFGTVFAGHRLTD--------RLQVAIKVIPRNRVLGWS---------- 73

Query: 85  NNEQLEMVREEI----RVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDG 140
                     E+    +V +   H  ++ LLD              +    L+    L  
Sbjct: 74  PLSDSVTCPLEVALLWKVGAGGGHPGVIRLLD-----WFET-----QEGFMLVLERPLPA 123

Query: 141 T-LLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKG 199
             L D+     T+K           F Q+ A ++H HS      H D+K  NILI  R+G
Sbjct: 124 QDLFDYI----TEKGPLGEGPSRCFFGQVVAAIQHCHSRG--VVHRDIKDENILIDLRRG 177

Query: 200 QPPLAILMDFGSA 212
              L    DFGS 
Sbjct: 178 CAKLI---DFGSG 187

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} Length = 307

 Score = 54.6 bits (132), Expect = 6e-09
 Identities = 34/205 (16%), Positives = 69/205 (33%), Gaps = 57/205 (27%)

Query: 23  INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTY-----A 77
           I+     +   +G G F  V                                 +     A
Sbjct: 5   IDYKEIEVEEVVGRGAFGVVCK-----------------------------AKWRAKDVA 35

Query: 78  MKKVLIQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVH 137
           +K++  +   + +    E+R  S  +H N++ L             G+  +   L+    
Sbjct: 36  IKQIESE--SERKAFIVELRQLSRVNHPNIVKLY------------GACLNPVCLVMEYA 81

Query: 138 LDGTLLD--HAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEP-PYAHNDVKPGNILI 194
             G+L +  H         +++ +  +    Q   G+ ++HS++P    H D+KP N+L+
Sbjct: 82  EGGSLYNVLHGA---EPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLL 138

Query: 195 TCRKGQPPLAILMDFGSARPAQSKF 219
                   +    DFG+A   Q+  
Sbjct: 139 VAGGTVLKIC---DFGTACDIQTHM 160

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens} Length = 352

 Score = 54.7 bits (132), Expect = 6e-09
 Identities = 32/199 (16%), Positives = 57/199 (28%), Gaps = 36/199 (18%)

Query: 23  INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVL 82
            +  ++++           +Y    T T    +                    +++K   
Sbjct: 39  KSGRQWKLKSFQTRDNQGILYEAAPTSTLTCDSGP--------------QKQKFSLK--- 81

Query: 83  IQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQE-------GSWKHEAYLLFP 135
                 L+     +     F  R   PL  +    + +          G   H+    F 
Sbjct: 82  ------LDAKDGRLFNEQNFFQRAAKPLQVNKWKKLYSTPLLAIPTCMGFGVHQDKYRFL 135

Query: 136 VH-LDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILI 194
           V    G  L  A  +  K    S   VLQ+  ++   L+ +H  E  Y H +V   NI +
Sbjct: 136 VLPSLGRSLQSALDVSPKHVL-SERSVLQVACRLLDALEFLHENE--YVHGNVTAENIFV 192

Query: 195 TCRKGQPPLAILMDFGSAR 213
                      L  +G A 
Sbjct: 193 --DPEDQSQVTLAGYGFAF 209

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens} Length = 305

 Score = 54.2 bits (131), Expect = 7e-09
 Identities = 44/171 (25%), Positives = 73/171 (42%), Gaps = 35/171 (20%)

Query: 27  RYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNN 86
           +Y +   LGEG +  V  V ++ T    A       K+              KK L +  
Sbjct: 6   KYLMGDLLGEGSYGKVKEVLDSETLCRRAV------KILK------------KKKLRRIP 47

Query: 87  EQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLL--FPVHLDGTLLD 144
                V++EI++     H+N++ L+D     V  N+E   K + Y++  + V     +LD
Sbjct: 48  NGEANVKKEIQLLRRLRHKNVIQLVD-----VLYNEE---KQKMYMVMEYCVCGMQEMLD 99

Query: 145 HAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILIT 195
                  K+  F        F Q+  GL+++HS      H D+KPGN+L+T
Sbjct: 100 SVP---EKR--FPVCQAHGYFCQLIDGLEYLHSQG--IVHKDIKPGNLLLT 143

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B* Length = 389

 Score = 54.5 bits (131), Expect = 7e-09
 Identities = 33/195 (16%), Positives = 68/195 (34%), Gaps = 48/195 (24%)

Query: 24  NENRYRILRQLGEGGFAY--VYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKV 81
               Y +L  +G+G      V L +   T                           ++++
Sbjct: 23  EGGCYELLTVIGKGFEDLMTVNLARYKPT----------------------GEYVTVRRI 60

Query: 82  LI--QNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSW--KHEAYLLFPVH 137
            +   +NE +  ++ E+ VS LF+H N++P               ++   +E +++    
Sbjct: 61  NLEACSNEMVTFLQGELHVSKLFNHPNIVPYR------------ATFIADNELWVVTSFM 108

Query: 138 LDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCR 197
             G+  D         +  +   +  I   +   L ++H +   Y H  VK  +ILI+  
Sbjct: 109 AYGSAKDLICT--HFMDGMNELAIAYILQGVLKALDYIHHMG--YVHRSVKASHILIS-V 163

Query: 198 KGQPPLAILMDFGSA 212
            G+  L+      S 
Sbjct: 164 DGKVYLS---GLRSN 175

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A* Length = 382

 Score = 54.7 bits (132), Expect = 7e-09
 Identities = 47/229 (20%), Positives = 72/229 (31%), Gaps = 73/229 (31%)

Query: 6   SGLNALYDSVNGGGDVWINE---NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLAN 62
              N  YD  N    V   E   +RY I   +G+G F  V                    
Sbjct: 31  KVYNDGYDDDNYDYIVKNGEKWMDRYEIDSLIGKGSFGQVV------------------- 71

Query: 63  KVKDPSHLSDDGTYAMKKVLIQNNEQ-----------LEMVREE--------IRVSSLFS 103
           K  D     +    A+K  +I+N +            LE++ +         + +   F 
Sbjct: 72  KAYD---RVEQEWVAIK--IIKNKKAFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFM 126

Query: 104 HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQ 163
            RN      H  +                 F + L   L D  +   T     S +   +
Sbjct: 127 FRN------HLCLV----------------FEM-LSYNLYDLLR--NTNFRGVSLNLTRK 161

Query: 164 IFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSA 212
              Q+C  L  + + E    H D+KP NIL+   K      +  DFGS+
Sbjct: 162 FAQQMCTALLFLATPELSIIHCDLKPENILLCNPKRSAIKIV--DFGSS 208

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Length = 405

 Score = 54.4 bits (131), Expect = 8e-09
 Identities = 44/201 (21%), Positives = 75/201 (37%), Gaps = 51/201 (25%)

Query: 25  ENRYRILR-QLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLI 83
           E+ +     ++G G + +VY                   K K      DD  YA+K++  
Sbjct: 19  EDLFEYEGCKVGRGTYGHVY-------------------KAKR-KDGKDDKDYALKQIE- 57

Query: 84  QNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLD---G 140
                +   RE I +     H N++ L    +    A+       + +LLF  + +    
Sbjct: 58  GTGISMSACRE-IALLRELKHPNVISLQK--VFLSHAD------RKVWLLFD-YAEHDLW 107

Query: 141 TLLDH--AKVMQTKKEFFSTSDVLQIFYQICAGLKHMHS---LEPPYAHNDVKPGNILIT 195
            ++    A     K        V  + YQI  G+ ++H+   L     H D+KP NIL+ 
Sbjct: 108 HIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHANWVL-----HRDLKPANILVM 162

Query: 196 C---RKGQPPLAILMDFGSAR 213
                +G+  +A   D G AR
Sbjct: 163 GEGPERGRVKIA---DMGFAR 180

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A* Length = 271

 Score = 53.4 bits (129), Expect = 1e-08
 Identities = 28/216 (12%), Positives = 64/216 (29%), Gaps = 68/216 (31%)

Query: 23  INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTY-----A 77
           I+  +   L +L E     ++                              G +      
Sbjct: 7   IDFKQLNFLTKLNENHSGELWK-----------------------------GRWQGNDIV 37

Query: 78  MKKVLIQ--NNEQLEMVREEIRVSSLFSHRNLLPLL---------DHAIIAVKANQEGSW 126
           +K + ++  +  +     EE     +FSH N+LP+L            +I          
Sbjct: 38  VKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPTLIT--------- 88

Query: 127 KHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHND 186
               ++ +     G+L +   + +        S  ++    +  G+  +H+LEP    + 
Sbjct: 89  --H-WMPY-----GSLYNV--LHEGTNFVVDQSQAVKFALDMARGMAFLHTLEPLIPRHA 138

Query: 187 VKPGNILITCRKGQPPLAILMDFGSARPAQSKFALG 222
           +   +++I         A +         QS   + 
Sbjct: 139 LNSRSVMIDEDM----TARISMADVKFSFQSPGRMY 170

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II} Length = 388

 Score = 53.5 bits (129), Expect = 2e-08
 Identities = 44/219 (20%), Positives = 83/219 (37%), Gaps = 51/219 (23%)

Query: 18  GGDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYA 77
           G        +Y ++++LG+G +  V+   +  T +  A        VK       + T A
Sbjct: 1   GRVDRHVLRKYELVKKLGKGAYGIVWKSIDRRTGEVVA--------VKKIFDAFQNSTDA 52

Query: 78  MKKVLIQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVH 137
            ++            RE + ++ L  H N++ LL+  ++    ++      + YL+F   
Sbjct: 53  -QRTF----------REIMILTELSGHENIVNLLN--VLRADNDR------DVYLVF--D 91

Query: 138 LDGTLLDHAKVMQTKKEFFSTSDVLQ-IFYQICAGLKHMHSLEPPYA---HNDVKPGNIL 193
              T  D   V++            Q + YQ+   +K++HS         H D+KP NIL
Sbjct: 92  YMET--DLHAVIRANI---LEPVHKQYVVYQLIKVIKYLHS-----GGLLHRDMKPSNIL 141

Query: 194 IT--CRKGQPPLAILMDFGSARPAQSKFALGQRRYSCRN 230
           +   C      + +  DFG +R   +   +        N
Sbjct: 142 LNAECH-----VKVA-DFGLSRSFVNIRRVTNNIPLSIN 174

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens} Length = 314

 Score = 53.1 bits (128), Expect = 2e-08
 Identities = 40/202 (19%), Positives = 77/202 (38%), Gaps = 49/202 (24%)

Query: 25  ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ 84
           E  + +L +LGEG +  VY      T                          A+K+V ++
Sbjct: 28  EEVFDVLEKLGEGSYGSVYKAIHKETGQ----------------------IVAIKQVPVE 65

Query: 85  NNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPV-HLD-GTL 142
               L+ + +EI +       +++               GS+     L   + +   G++
Sbjct: 66  --SDLQEIIKEISIMQQCDSPHVVKYY------------GSYFKNTDLWIVMEYCGAGSV 111

Query: 143 LDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPP 202
            D   +++ + +  +  ++  I      GL+++H +     H D+K GNIL+   +G   
Sbjct: 112 SD---IIRLRNKTLTEDEIATILQSTLKGLEYLHFMR--KIHRDIKAGNILLN-TEGHAK 165

Query: 203 LAILMDFGSARPAQSKFALGQR 224
           LA   DFG A   Q    + +R
Sbjct: 166 LA---DFGVA--GQLTDTMAKR 182

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A* Length = 348

 Score = 52.4 bits (126), Expect = 4e-08
 Identities = 43/189 (22%), Positives = 71/189 (37%), Gaps = 41/189 (21%)

Query: 25  ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ 84
           E  +  LR++G G F  VY  ++   ++  A       K              M     Q
Sbjct: 53  EKLFSDLREIGHGSFGAVYFARDVRNSEVVAI------KK-------------MSYSGKQ 93

Query: 85  NNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYL-LFPVHLDGTLL 143
           +NE+ + + +E+R      H N                 G +  E    L   +  G+  
Sbjct: 94  SNEKWQDIIKEVRFLQKLRHPNT------------IQYRGCYLREHTAWLVMEYCLGSAS 141

Query: 144 DHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPL 203
           D   +++  K+     ++  + +    GL ++HS      H DVK GNIL++   G   L
Sbjct: 142 D---LLEVHKKPLQEVEIAAVTHGALQGLAYLHSHN--MIHRDVKAGNILLS-EPGLVKL 195

Query: 204 AILMDFGSA 212
               DFGSA
Sbjct: 196 G---DFGSA 201

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A Length = 364

 Score = 52.1 bits (125), Expect = 4e-08
 Identities = 36/198 (18%), Positives = 68/198 (34%), Gaps = 34/198 (17%)

Query: 23  INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVL 82
           +    +++   +G+GGF  +YL     +                   +  D    +K V 
Sbjct: 32  MAAAAWKVGLPIGQGGFGCIYLADMNSSES-----------------VGSDAPCVVK-VE 73

Query: 83  IQNNEQLEMVREEIRV-------SSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFP 135
             +N  L     E++          +        L    +     +       ++Y    
Sbjct: 74  PSDNGPLFT---ELKFYQRAAKPEQIQKWIRTRKLKYLGVPKYWGSGLHDKNGKSYRFMI 130

Query: 136 VHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILIT 195
           +   G+ L        K+  FS   VLQ+  +I   L+++H  E  Y H D+K  N+L+ 
Sbjct: 131 MDRFGSDLQKIYEANAKR--FSRKTVLQLSLRILDILEYIHEHE--YVHGDIKASNLLLN 186

Query: 196 CRKGQPPLAILMDFGSAR 213
            +        L+D+G A 
Sbjct: 187 YKNPD--QVYLVDYGLAY 202

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group} Length = 483

 Score = 51.9 bits (124), Expect = 7e-08
 Identities = 38/189 (20%), Positives = 67/189 (35%), Gaps = 40/189 (21%)

Query: 26  NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN 85
           N++R+ R++G G F  +YL     T +   A      K K P                  
Sbjct: 7   NKFRLGRKIGSGSFGEIYLGTNIQT-NEEVAIKLENVKTKHP------------------ 47

Query: 86  NEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDH 145
             QL     E ++  +      +P +                   Y +  + L G  L+ 
Sbjct: 48  --QLLY---ESKIYRILQGGTGIPNVRW-----------FGVEGDYNVLVMDLLGPSLED 91

Query: 146 AKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAI 205
                ++K   S   VL +  Q+   ++ +HS    + H D+KP N L+     +     
Sbjct: 92  LFNFCSRK--LSLKTVLMLADQMINRVEFVHSKS--FLHRDIKPDNFLMG-LGRRANQVY 146

Query: 206 LMDFGSARP 214
           ++DFG A+ 
Sbjct: 147 IIDFGLAKK 155

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A* Length = 276

 Score = 51.1 bits (123), Expect = 8e-08
 Identities = 32/168 (19%), Positives = 64/168 (38%), Gaps = 35/168 (20%)

Query: 27  RYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNN 86
            Y +   LG G F  V + +  +T    A        VK            + +  I++ 
Sbjct: 12  HYVLGDTLGVGTFGKVKIGEHQLTGHKVA--------VK-----------ILNRQKIRSL 52

Query: 87  EQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHA 146
           + +  ++ EI+   LF H +++ L    +I+           + +++      G L D+ 
Sbjct: 53  DVVGKIKREIQNLKLFRHPHIIKLYQ--VIST--------PTDFFMVMEYVSGGELFDYI 102

Query: 147 KVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILI 194
                K       +  ++F QI + + + H       H D+KP N+L+
Sbjct: 103 ----CKHGRVEEMEARRLFQQILSAVDYCHRHM--VVHRDLKPENVLL 144

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* Length = 309

 Score = 51.2 bits (123), Expect = 8e-08
 Identities = 36/210 (17%), Positives = 71/210 (33%), Gaps = 66/210 (31%)

Query: 19  GDVW-INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTY- 76
           GD   I      I  ++G G F  V+                                + 
Sbjct: 29  GDDMDIPWCDLNIKEKIGAGSFGTVHR-----------------------------AEWH 59

Query: 77  ----AMKKVLIQ--NNEQLEMVREEIRVSSLFSHRNLLPLL-------DHAIIAVKANQE 123
               A+K ++ Q  + E++     E+ +     H N++  +       + +I+       
Sbjct: 60  GSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQPPNLSIVT------ 113

Query: 124 GSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYA 183
                E YL       G+L         +++       L + Y +  G+ ++H+  PP  
Sbjct: 114 -----E-YLS-----RGSLYRLLHKSGAREQL-DERRRLSMAYDVAKGMNYLHNRNPPIV 161

Query: 184 HNDVKPGNILITCRKGQPPLAILMDFGSAR 213
           H ++K  N+L+  +K    +    DFG +R
Sbjct: 162 HRNLKSPNLLVD-KKYTVKVC---DFGLSR 187

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A* Length = 303

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 46/215 (21%), Positives = 76/215 (35%), Gaps = 49/215 (22%)

Query: 23  INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKV- 81
           IN + Y +   +G G  A V                                  A+K++ 
Sbjct: 12  INRDDYELQEVIGSGATAVVQAAY----------------------CAPKKEKVAIKRIN 49

Query: 82  LIQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSW--KHEAYLLFPVHLD 139
           L +    ++ + +EI+  S   H N++                S+  K E +L+  +   
Sbjct: 50  LEKCQTSMDELLKEIQAMSQCHHPNIVSYY------------TSFVVKDELWLVMKLLSG 97

Query: 140 GTLLDHAKVMQTKKEF----FSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILIT 195
           G++LD  K +  K E        S +  I  ++  GL+++H       H DVK GNIL+ 
Sbjct: 98  GSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLHKNG--QIHRDVKAGNILLG 155

Query: 196 CRKGQPPLAILMDFGSARPAQSKFALGQRRYSCRN 230
              G   +A   DFG +  A         R   R 
Sbjct: 156 -EDGSVQIA---DFGVS--AFLATGGDITRNKVRK 184

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* Length = 301

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 36/140 (25%), Positives = 56/140 (40%), Gaps = 21/140 (15%)

Query: 80  KVLIQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLD 139
           K+    +E+      E+  + +  H N+L       IA       S   + +L+   H  
Sbjct: 37  KIFSSRDEKSWFRETELYNTVMLRHENILGF-----IASDMTSRHSST-QLWLITHYHEM 90

Query: 140 GTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLE------PPYAHNDVKPGNIL 193
           G+L D+ +          T   L+I   I +GL H+H         P  AH D+K  NIL
Sbjct: 91  GSLYDYLQ-----LTTLDTVSCLRIVLSIASGLAHLHIEIFGTQGKPAIAHRDLKSKNIL 145

Query: 194 ITCRKGQPPLAILMDFGSAR 213
           +  + GQ  +A   D G A 
Sbjct: 146 VK-KNGQCCIA---DLGLAV 161

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens} Length = 326

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 39/209 (18%), Positives = 71/209 (33%), Gaps = 54/209 (25%)

Query: 25  ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ 84
              + ++  +G G +  VY  +   T   +A                        KV+  
Sbjct: 23  AGIFELVELVGNGTYGQVYKGRHVKTGQLAAI-----------------------KVMDV 59

Query: 85  NNEQLEMVREEIRV-SSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHL----- 138
             ++ E +++EI +      HRN+                G++  +        L     
Sbjct: 60  TGDEEEEIKQEINMLKKYSHHRNIATYY------------GAFIKKNPPGMDDQLWLVME 107

Query: 139 ---DGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILIT 195
               G++ D  K  +          +  I  +I  GL H+H  +    H D+K  N+L+T
Sbjct: 108 FCGAGSVTDLIKNTKGNT--LKEEWIAYICREILRGLSHLHQHK--VIHRDIKGQNVLLT 163

Query: 196 CRKGQPPLAILMDFGSARPAQSKFALGQR 224
               +  L    DFG +  AQ    +G+R
Sbjct: 164 -ENAEVKLV---DFGVS--AQLDRTVGRR 186

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A* Length = 298

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 34/189 (17%), Positives = 70/189 (37%), Gaps = 40/189 (21%)

Query: 26  NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN 85
             Y++ R++GEG F  ++                         +L ++   A+K    ++
Sbjct: 10  VHYKVGRRIGEGSFGVIFEGT----------------------NLLNNQQVAIKFEPRRS 47

Query: 86  NEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDH 145
           +     +R+E R   L +    +P + +             +   + +  + L G  L+ 
Sbjct: 48  DAPQ--LRDEYRTYKLLAGCTGIPNVYY-----------FGQEGLHNVLVIDLLGPSLED 94

Query: 146 AKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAI 205
              +  +K  FS   V     Q+ A ++ +H       + D+KP N LI     +    I
Sbjct: 95  LLDLCGRK--FSVKTVAMAAKQMLARVQSIHEKS--LVYRDIKPDNFLIGRPNSKNANMI 150

Query: 206 -LMDFGSAR 213
            ++DFG  +
Sbjct: 151 YVVDFGMVK 159

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe} Length = 336

 Score = 50.4 bits (121), Expect = 2e-07
 Identities = 42/196 (21%), Positives = 70/196 (35%), Gaps = 45/196 (22%)

Query: 27  RYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNN 86
            Y I   LGEG F  V L     T    A        +K            + + L++ +
Sbjct: 10  PYIIRETLGEGSFGKVKLATHYKTQQKVA--------LK-----------FISRQLLKKS 50

Query: 87  EQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPV--HLDGTLLD 144
           +    V  EI    L  H +++ L D  +I    +           +  V  +  G L D
Sbjct: 51  DMHMRVEREISYLKLLRHPHIIKLYD--VITTPTD-----------IVMVIEYAGGELFD 97

Query: 145 HAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLA 204
           +      +K+  +  +  + F QI   +++ H  +    H D+KP N+L+        +A
Sbjct: 98  YI----VEKKRMTEDEGRRFFQQIICAIEYCHRHK--IVHRDLKPENLLLD-DNLNVKIA 150

Query: 205 ILMDFG-SARPAQSKF 219
              DFG S       F
Sbjct: 151 ---DFGLSNIMTDGNF 163

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A* Length = 297

 Score = 50.4 bits (121), Expect = 2e-07
 Identities = 38/203 (18%), Positives = 69/203 (33%), Gaps = 49/203 (24%)

Query: 25  ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ 84
           + +Y    ++G+G    VY   +  T                          A++++ +Q
Sbjct: 19  KKKYTRFEKIGQGASGTVYTAMDVATGQ----------------------EVAIRQMNLQ 56

Query: 85  NNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYL-LFPVHLD-GTL 142
              + E++  EI V     + N++  L             S+     L +   +L  G+L
Sbjct: 57  QQPKKELIINEILVMRENKNPNIVNYL------------DSYLVGDELWVVMEYLAGGSL 104

Query: 143 LDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPP 202
            D   V+           +  +  +    L+ +HS +    H D+K  NIL+    G   
Sbjct: 105 TD---VVTETC--MDEGQIAAVCRECLQALEFLHSNQ--VIHRDIKSDNILLG-MDGSVK 156

Query: 203 LAILMDFGSARPAQSKFALGQRR 225
           L    DFG    AQ      +R 
Sbjct: 157 LT---DFGFC--AQITPEQSKRS 174

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens} Length = 345

 Score = 50.1 bits (120), Expect = 2e-07
 Identities = 37/197 (18%), Positives = 70/197 (35%), Gaps = 41/197 (20%)

Query: 26  NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN 85
           N++ + +++G GGF  +YL   T                        D  + +K V  Q 
Sbjct: 37  NQWVLGKKIGSGGFGLIYLAFPTNKP-------------------EKDARHVVK-VEYQE 76

Query: 86  NEQLEM-VREEIRVSSLFSHRNLLPLLDHAIIAV--------KANQEGSWKHEAYLLFPV 136
           N  L   ++   RV+     +  +       + +           +  S++   +++   
Sbjct: 77  NGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLFYGSGLTEFKGRSYR---FMVME- 132

Query: 137 HLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITC 196
              G  L            F  S VLQ+  ++   L+++H  E  Y H D+K  N+L+  
Sbjct: 133 -RLGIDLQKISGQNGT---FKKSTVLQLGIRMLDVLEYIHENE--YVHGDIKAANLLL-- 184

Query: 197 RKGQPPLAILMDFGSAR 213
               P    L D+G + 
Sbjct: 185 GYKNPDQVYLADYGLSY 201

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A* Length = 303

 Score = 50.0 bits (120), Expect = 2e-07
 Identities = 41/203 (20%), Positives = 76/203 (37%), Gaps = 50/203 (24%)

Query: 25  ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKV-LI 83
           E  +  L ++G+G F  V+   +  T                          A+K + L 
Sbjct: 21  EELFTKLEKIGKGSFGEVFKGIDNRTQK----------------------VVAIKIIDLE 58

Query: 84  QNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYL--LFPVHLDGT 141
           +  +++E +++EI V S      +                GS+  +  L  +      G+
Sbjct: 59  EAEDEIEDIQQEITVLSQCDSPYVTKYY------------GSYLKDTKLWIIMEYLGGGS 106

Query: 142 LLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQP 201
            LD   +++        + +  I  +I  GL ++HS +    H D+K  N+L++   G+ 
Sbjct: 107 ALD---LLEPGP--LDETQIATILREILKGLDYLHSEK--KIHRDIKAANVLLS-EHGEV 158

Query: 202 PLAILMDFGSARPAQSKFALGQR 224
            LA   DFG A   Q      +R
Sbjct: 159 KLA---DFGVA--GQLTDTQIKR 176

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} Length = 310

 Score = 50.0 bits (120), Expect = 2e-07
 Identities = 32/197 (16%), Positives = 62/197 (31%), Gaps = 53/197 (26%)

Query: 23  INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVL 82
              +       LG+G F     V                       H        MK+++
Sbjct: 7   FRPSDLIHGEVLGKGCFGQAIKVT----------------------HRETGEVMVMKELI 44

Query: 83  IQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHL---- 138
             + E      +E++V     H N+L  +            G    +      ++     
Sbjct: 45  RFDEETQRTFLKEVKVMRCLEHPNVLKFI------------GVLYKDK----RLNFITEY 88

Query: 139 --DGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITC 196
              GTL     ++++    +  S  +     I +G+ ++HS+     H D+   N L+  
Sbjct: 89  IKGGTLRG---IIKSMDSQYPWSQRVSFAKDIASGMAYLHSM--NIIHRDLNSHNCLV-- 141

Query: 197 RKGQPPLAILMDFGSAR 213
              +    ++ DFG AR
Sbjct: 142 --RENKNVVVADFGLAR 156

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B Length = 543

 Score = 50.6 bits (121), Expect = 2e-07
 Identities = 41/201 (20%), Positives = 67/201 (33%), Gaps = 61/201 (30%)

Query: 23  INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMK--- 79
           + E+ +   R LG GGF  V+  +                  K    L     YA K   
Sbjct: 182 MGEDWFLDFRVLGRGGFGEVFACQM-----------------KATGKL-----YACKKLN 219

Query: 80  KVLIQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAY----LLFP 135
           K  ++  +  +    E ++ +    R ++ L                   A+     L  
Sbjct: 220 KKRLKKRKGYQGAMVEKKILAKVHSRFIVSL-----------------AYAFETKTDLCL 262

Query: 136 VHLD----GTLLDHAKVMQTKKEFFSTSDVLQIFY--QICAGLKHMHSLEPPYAHNDVKP 189
           V +     G +  H   +      F       IFY  QI +GL+H+H     Y   D+KP
Sbjct: 263 V-MTIMNGGDIRYHIYNVDEDNPGFQEPRA--IFYTAQIVSGLEHLHQRNIIY--RDLKP 317

Query: 190 GNILITCRKGQPPLAILMDFG 210
            N+L+    G   ++   D G
Sbjct: 318 ENVLLD-DDGNVRIS---DLG 334

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A* Length = 410

 Score = 50.1 bits (120), Expect = 2e-07
 Identities = 40/192 (20%), Positives = 71/192 (36%), Gaps = 58/192 (30%)

Query: 30  ILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMK---KVLIQNN 86
           +++ +G G F  V LV+   T            KV           YAMK   K  +   
Sbjct: 73  VVKVIGRGAFGEVQLVRHKST-----------RKV-----------YAMKLLSKFEMIKR 110

Query: 87  EQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLD----GTL 142
                  EE  + +  +   ++ L              +++ + YL   V ++    G L
Sbjct: 111 SDSAFFWEERDIMAFANSPWVVQL------------FYAFQDDRYLYM-V-MEYMPGGDL 156

Query: 143 LDHAKVMQTKKEFFSTSDVLQIFY--QICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQ 200
           ++      +  +        + FY  ++   L  +HS+   + H DVKP N+L+  + G 
Sbjct: 157 VNL----MSNYDV--PEKWAR-FYTAEVVLALDAIHSMG--FIHRDVKPDNMLLD-KSGH 206

Query: 201 PPLAILMDFGSA 212
             LA   DFG+ 
Sbjct: 207 LKLA---DFGTC 215

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* Length = 342

 Score = 49.8 bits (119), Expect = 2e-07
 Identities = 33/140 (23%), Positives = 55/140 (39%), Gaps = 21/140 (15%)

Query: 80  KVLIQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLD 139
           K+     E+      EI  + +  H N+L       IA      G+W  + +L+   H  
Sbjct: 71  KIFSSREERSWFREAEIYQTVMLRHENILGF-----IAADNKDNGTWT-QLWLVSDYHEH 124

Query: 140 GTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHS------LEPPYAHNDVKPGNIL 193
           G+L D+       +   +   ++++     +GL H+H        +P  AH D+K  NIL
Sbjct: 125 GSLFDY-----LNRYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNIL 179

Query: 194 ITCRKGQPPLAILMDFGSAR 213
           +   K      I  D G A 
Sbjct: 180 V---KKNGTCCIA-DLGLAV 195

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A Length = 296

 Score = 48.9 bits (117), Expect = 4e-07
 Identities = 40/189 (21%), Positives = 73/189 (38%), Gaps = 42/189 (22%)

Query: 26  NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN 85
           NRYR+ R++G G F  +YL                         ++     A+K   ++ 
Sbjct: 9   NRYRLGRKIGSGSFGDIYLGT----------------------DIAAGEEVAIKLECVKT 46

Query: 86  NE-QLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLD 144
              QL +   E ++  +      +P +                   Y +  + L G  L+
Sbjct: 47  KHPQLHI---ESKIYKMMQGGVGIPTIRW-----------CGAEGDYNVMVMELLGPSLE 92

Query: 145 HAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLA 204
                 ++K  FS   VL +  Q+ + ++++HS    + H DVKP N L+     +  L 
Sbjct: 93  DLFNFCSRK--FSLKTVLLLADQMISRIEYIHSKN--FIHRDVKPDNFLMG-LGKKGNLV 147

Query: 205 ILMDFGSAR 213
            ++DFG A+
Sbjct: 148 YIIDFGLAK 156

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A* Length = 321

 Score = 48.9 bits (117), Expect = 5e-07
 Identities = 34/203 (16%), Positives = 72/203 (35%), Gaps = 49/203 (24%)

Query: 25  ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ 84
                   ++GEG    V L +E  +                          A+K + ++
Sbjct: 44  RLLLDSYVKIGEGSTGIVCLAREKHSGR----------------------QVAVKMMDLR 81

Query: 85  NNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYL-LFPVHLD-GTL 142
             ++ E++  E+ +   + H N++ +              S+     L +    L  G L
Sbjct: 82  KQQRRELLFNEVVIMRDYQHFNVVEMY------------KSYLVGEELWVLMEFLQGGAL 129

Query: 143 LDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPP 202
            D   ++   +   +   +  +   +   L ++H+      H D+K  +IL+T   G+  
Sbjct: 130 TD---IVSQVR--LNEEQIATVCEAVLQALAYLHAQG--VIHRDIKSDSILLT-LDGRVK 181

Query: 203 LAILMDFGSARPAQSKFALGQRR 225
           L+   DFG    AQ    + +R+
Sbjct: 182 LS---DFGFC--AQISKDVPKRK 199

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A* 3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A* Length = 289

 Score = 48.4 bits (116), Expect = 6e-07
 Identities = 37/203 (18%), Positives = 68/203 (33%), Gaps = 60/203 (29%)

Query: 20  DVW-INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAM 78
           D W I + +  + +++G G F  VY              G     V            A+
Sbjct: 17  DDWEIPDGQITVGQRIGSGSFGTVYK-------------GKWHGDV------------AV 51

Query: 79  KKVLIQ--NNEQLEMVREEIRVSSLFSHRNLLPLL------DHAIIAVKANQEGSWKHEA 130
           K + +     +QL+  + E+ V     H N+L  +        AI+            + 
Sbjct: 52  KMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTAPQLAIVT-----------Q- 99

Query: 131 YLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPG 190
           +         +L  H   +   +  F    ++ I  Q   G+ ++H+      H D+K  
Sbjct: 100 WCE-----GSSLYHH---LHASETKFEMKKLIDIARQTARGMDYLHA--KSIIHRDLKSN 149

Query: 191 NILITCRKGQPPLAILMDFGSAR 213
           NI +     +     + DFG A 
Sbjct: 150 NIFL----HEDNTVKIGDFGLAT 168

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens} Length = 295

 Score = 48.5 bits (116), Expect = 6e-07
 Identities = 40/187 (21%), Positives = 79/187 (42%), Gaps = 52/187 (27%)

Query: 34  LGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVR 93
           LG+G +  VY               G          LS+    A+K++  +++   + + 
Sbjct: 30  LGKGTYGIVYA--------------GR--------DLSNQVRIAIKEIPERDSRYSQPLH 67

Query: 94  EEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYL-LFPVHLD----GTLLDHAKV 148
           EEI +     H+N+          V+    GS+    ++ +F   ++    G+L   + +
Sbjct: 68  EEIALHKHLKHKNI----------VQ--YLGSFSENGFIKIF---MEQVPGGSL---SAL 109

Query: 149 MQTKKEFFSTSDVLQIFY--QICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAIL 206
           +++K      ++    FY  QI  GLK++H  +    H D+K  N+LI    G   ++  
Sbjct: 110 LRSKWGPLKDNEQTIGFYTKQILEGLKYLHDNQ--IVHRDIKGDNVLINTYSGVLKIS-- 165

Query: 207 MDFGSAR 213
            DFG+++
Sbjct: 166 -DFGTSK 171

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* Length = 429

 Score = 49.0 bits (117), Expect = 6e-07
 Identities = 48/228 (21%), Positives = 80/228 (35%), Gaps = 79/228 (34%)

Query: 9   NALYDSVNGG-----GDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANK 63
           N  YD   G       D      RY +L+ +G+G F  V                    K
Sbjct: 77  NGGYDDDQGSYVQVPHDHV--AYRYEVLKVIGKGSFGQVV-------------------K 115

Query: 64  VKDPSHLSDDGTYAMKKVLIQNNEQ-----------LEMVREE--------IRVSSLFSH 104
             D          A+K  +++N ++           LE +R++        I +   F+ 
Sbjct: 116 AYD---HKVHQHVALK--MVRNEKRFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTF 170

Query: 105 RNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQI 164
           RN      H  +                 F + L   L +  K  + K + FS   V + 
Sbjct: 171 RN------HICMT----------------FEL-LSMNLYELIK--KNKFQGFSLPLVRKF 205

Query: 165 FYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSA 212
            + I   L  +H       H D+KP NIL+  ++G+  +  ++DFGS+
Sbjct: 206 AHSILQCLDALHKNR--IIHCDLKPENILL-KQQGRSGIK-VIDFGSS 249

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A* Length = 437

 Score = 48.6 bits (116), Expect = 7e-07
 Identities = 46/192 (23%), Positives = 69/192 (35%), Gaps = 56/192 (29%)

Query: 30  ILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMK---KVLIQNN 86
           IL+ +G G F  V +VK               +KV           +AMK   K  +   
Sbjct: 78  ILKVIGRGAFGEVAVVKLKNA-----------DKV-----------FAMKILNKWEMLKR 115

Query: 87  EQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLD----GTL 142
            +    REE         R++L   D   I        +++ +  L   V +D    G L
Sbjct: 116 AETACFREE---------RDVLVNGDSKWIT---TLHYAFQDDNNLYL-V-MDYYVGGDL 161

Query: 143 LDHAKVMQTKKEFFSTSDVLQIFY--QICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQ 200
           L     +   ++          FY  ++   +  +H L   Y H D+KP NIL+    G 
Sbjct: 162 LTL---LSKFEDRLPEEMA--RFYLAEMVIAIDSVHQLH--YVHRDIKPDNILMD-MNGH 213

Query: 201 PPLAILMDFGSA 212
             LA   DFGS 
Sbjct: 214 IRLA---DFGSC 222

>1uu3_A HPDK1, 3-phosphoinositide dependent protein kinase-1; PKB, inhibitor, LY333531, diabetes, cancer, transferase, serine/threonine-protein kinase; HET: SEP LY4; 1.7A {Homo sapiens} SCOP: d.144.1.7 PDB: 1okz_A* 1oky_A* 1uu7_A* 1uu8_A* 2biy_A* 3rwp_A* 2xch_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* ... Length = 310

 Score = 48.4 bits (116), Expect = 8e-07
 Identities = 44/194 (22%), Positives = 71/194 (36%), Gaps = 57/194 (29%)

Query: 28  YRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMK---KVLIQ 84
           ++  + LGEG F+ V L +E  T           ++            YA+K   K  I 
Sbjct: 32  FKFGKILGEGSFSTVVLARELAT-----------SRE-----------YAIKILEKRHII 69

Query: 85  NNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLD----G 140
              ++  V  E  V S   H   + L              +++ +  L F   L     G
Sbjct: 70  KENKVPYVTRERDVMSRLDHPFFVKL------------YFTFQDDEKLYF-G-LSYAKNG 115

Query: 141 TLLDHAKVMQTKKEFFSTSDVLQIFY--QICAGLKHMHSLEPPYAHNDVKPGNILITCRK 198
            LL + +    K   F  +     FY  +I + L+++H       H D+KP NIL+    
Sbjct: 116 ELLKYIR----KIGSFDETCTR--FYTAEIVSALEYLHGKG--IIHRDLKPENILLN-ED 166

Query: 199 GQPPLAILMDFGSA 212
               +    DFG+A
Sbjct: 167 MHIQIT---DFGTA 177

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus} Length = 476

 Score = 48.2 bits (115), Expect = 1e-06
 Identities = 35/168 (20%), Positives = 64/168 (38%), Gaps = 35/168 (20%)

Query: 27  RYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNN 86
            Y +   LG G F  V + K  +T    A        VK            + +  I++ 
Sbjct: 17  HYILGDTLGVGTFGKVKVGKHELTGHKVA--------VK-----------ILNRQKIRSL 57

Query: 87  EQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHA 146
           + +  +R EI+   LF H +++ L       V +        + +++      G L D+ 
Sbjct: 58  DVVGKIRREIQNLKLFRHPHIIKLYQ-----VIST-----PSDIFMVMEYVSGGELFDYI 107

Query: 147 KVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILI 194
                K       +  ++F QI +G+ + H       H D+KP N+L+
Sbjct: 108 ----CKNGRLDEKESRRLFQQILSGVDYCHRHM--VVHRDLKPENVLL 149

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens} Length = 412

 Score = 47.4 bits (113), Expect = 2e-06
 Identities = 50/192 (26%), Positives = 70/192 (36%), Gaps = 56/192 (29%)

Query: 30  ILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMK---KVLIQNN 86
           IL+ +G G F+ V +VK   T            +V           YAMK   K  +   
Sbjct: 65  ILKVIGRGAFSEVAVVKMKQT-----------GQV-----------YAMKIMNKWDMLKR 102

Query: 87  EQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLD----GTL 142
            ++   REE  V      R +  L              +++ E YL   V ++    G L
Sbjct: 103 GEVSCFREERDVLVNGDRRWITQL------------HFAFQDENYLYL-V-MEYYVGGDL 148

Query: 143 LDHAKVMQTKKEFFSTSDVLQIFY--QICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQ 200
           L     +    E          FY  +I   +  +H L   Y H D+KP NIL+  R G 
Sbjct: 149 LTL---LSKFGERIPAEMA--RFYLAEIVMAIDSVHRLG--YVHRDIKPDNILLD-RCGH 200

Query: 201 PPLAILMDFGSA 212
             LA   DFGS 
Sbjct: 201 IRLA---DFGSC 209

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens} Length = 318

 Score = 47.0 bits (112), Expect = 2e-06
 Identities = 34/189 (17%), Positives = 66/189 (34%), Gaps = 41/189 (21%)

Query: 23  INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVL 82
              N    L ++G G    V+ ++                              A+K++ 
Sbjct: 22  AEINDLENLGEMGSGTCGQVWKMR----------------------FRKTGHVIAVKQMR 59

Query: 83  IQNNEQ-LEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGT 141
              N++  + +  ++ V        +L   D   I V+    G++     +   + L GT
Sbjct: 60  RSGNKEENKRILMDLDV--------VLKSHDCPYI-VQC--FGTFITNTDVFIAMELMGT 108

Query: 142 LLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQP 201
             +  K+ +  +       + ++   I   L ++   +    H DVKP NIL+   +GQ 
Sbjct: 109 CAE--KLKKRMQGPIPERILGKMTVAIVKALYYLKE-KHGVIHRDVKPSNILLD-ERGQI 164

Query: 202 PLAILMDFG 210
            L    DFG
Sbjct: 165 KLC---DFG 170

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} Length = 337

 Score = 47.0 bits (112), Expect = 2e-06
 Identities = 40/140 (28%), Positives = 56/140 (40%), Gaps = 21/140 (15%)

Query: 80  KVLIQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLD 139
           KV     E       EI  + L  H N+L       IA      GSW  + YL+   H +
Sbjct: 66  KVFFTTEEASWFRETEIYQTVLMRHENILGF-----IAADIKGTGSWT-QLYLITDYHEN 119

Query: 140 GTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSL------EPPYAHNDVKPGNIL 193
           G+L D+ K             +L++ Y   +GL H+H+       +P  AH D+K  NIL
Sbjct: 120 GSLYDYLK-----STTLDAKSMLKLAYSSVSGLCHLHTEIFSTQGKPAIAHRDLKSKNIL 174

Query: 194 ITCRKGQPPLAILMDFGSAR 213
           +   K      I  D G A 
Sbjct: 175 V---KKNGTCCIA-DLGLAV 190

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A* Length = 355

 Score = 46.9 bits (112), Expect = 2e-06
 Identities = 45/228 (19%), Positives = 73/228 (32%), Gaps = 86/228 (37%)

Query: 19  GDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAM 78
           GD    + RY I+  LGEG F  V                    +  D  H       A+
Sbjct: 14  GDWL--QERYEIVGNLGEGTFGKVV-------------------ECLD--HARGKSQVAL 50

Query: 79  KKVLIQNNEQ-----------LEMVREE--------IRVSSLFSHRNLLPLLDHAIIAVK 119
           K  +I+N  +           L+ ++E+        + +S  F+         H  IA  
Sbjct: 51  K--IIRNVGKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHG------HMCIA-- 100

Query: 120 ANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLE 179
                         F + L     +  K  +   + +    V  + YQ+C  L+ +H  +
Sbjct: 101 --------------FEL-LGKNTFEFLK--ENNFQPYPLPHVRHMAYQLCHALRFLHENQ 143

Query: 180 PPYAHNDVKPGNILITCRKGQPPLAI---------------LMDFGSA 212
               H D+KP NIL    + +                    + DFGSA
Sbjct: 144 --LTHTDLKPENILFVNSEFETLYNEHKSCEEKSVKNTSIRVADFGSA 189

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A Length = 328

 Score = 46.9 bits (112), Expect = 2e-06
 Identities = 39/184 (21%), Positives = 71/184 (38%), Gaps = 40/184 (21%)

Query: 27  RYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNN 86
            YR+L+ +G+G FA V L +  +T         +A K+ D + L              N 
Sbjct: 16  NYRLLKTIGKGNFAKVKLARHILTGRE------VAIKIIDKTQL--------------NP 55

Query: 87  EQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHA 146
             L+ +  E+R+  + +H N++ L +  +I          +   YL+      G + D+ 
Sbjct: 56  TSLQKLFREVRIMKILNHPNIVKLFE--VIET--------EKTLYLIMEYASGGEVFDYL 105

Query: 147 KVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAIL 206
                        +    F QI + +++ H       H D+K  N+L+        +A  
Sbjct: 106 ----VAHGRMKEKEARSKFRQIVSAVQYCHQKR--IVHRDLKAENLLLD-ADMNIKIA-- 156

Query: 207 MDFG 210
            DFG
Sbjct: 157 -DFG 159

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A* Length = 397

 Score = 47.2 bits (112), Expect = 2e-06
 Identities = 39/179 (21%), Positives = 65/179 (36%), Gaps = 43/179 (24%)

Query: 26  NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN 85
            RY ++R+LG G F+ V+L  +                            +   KV+   
Sbjct: 37  GRYHVIRKLGWGHFSTVWLSWDIQG-----------------------KKFVAMKVVKSA 73

Query: 86  NEQLEMVREEIRV--------SSLFSHRNLLPLLDHAIIAVKANQEGSW-KHEAYLLFPV 136
               E   +EIR+         +  +   ++ LLD   I       G    H   ++F V
Sbjct: 74  EHYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKI------SGVNGTHIC-MVFEV 126

Query: 137 HLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILIT 195
            L   LL        +        V +I  Q+  GL ++H+ +    H D+KP NIL++
Sbjct: 127 -LGHHLLKWIIKSNYQG--LPLPCVKKIIQQVLQGLDYLHT-KCRIIHTDIKPENILLS 181

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ... Length = 276

 Score = 46.4 bits (111), Expect = 2e-06
 Identities = 36/168 (21%), Positives = 63/168 (37%), Gaps = 37/168 (22%)

Query: 27  RYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNN 86
            + +++ LGEG +  V L    VT +A A       K+ D     D              
Sbjct: 8   DWDLVQTLGEGAYGEVQLAVNRVTEEAVAV------KIVDMKRAVDC------------- 48

Query: 87  EQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHA 146
              E +++EI ++ + +H N++    +        Q        YL       G L D  
Sbjct: 49  --PENIKKEICINKMLNHENVVKF--YGHRREGNIQ--------YLFLEYCSGGELFDRI 96

Query: 147 KVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILI 194
                        D  + F+Q+ AG+ ++H +     H D+KP N+L+
Sbjct: 97  ----EPDIGMPEPDAQRFFHQLMAGVVYLHGIG--ITHRDIKPENLLL 138

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} Length = 271

 Score = 46.5 bits (111), Expect = 3e-06
 Identities = 40/215 (18%), Positives = 70/215 (32%), Gaps = 73/215 (33%)

Query: 21  VW-INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTY--- 76
           +  I+     +   +G GGF  VY                                +   
Sbjct: 1   LLEIDFAELTLEEIIGIGGFGKVYR-----------------------------AFWIGD 31

Query: 77  --AMKKVLIQNNEQ----LEMVREEIRVSSLFSHRNLLPLL-------DHAIIAVKANQE 123
             A+K      +E     +E VR+E ++ ++  H N++ L        +  ++       
Sbjct: 32  EVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCLKEPNLCLVM------ 85

Query: 124 GSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEP-PY 182
                E +        G L     V+  K+       ++    QI  G+ ++H     P 
Sbjct: 86  -----E-FAR-----GGPLNR---VLSGKR--IPPDILVNWAVQIARGMNYLHDEAIVPI 129

Query: 183 AHNDVKPGNILITCRKGQPPLAILM----DFGSAR 213
            H D+K  NILI  +     L+  +    DFG AR
Sbjct: 130 IHRDLKSSNILILQKVENGDLSNKILKITDFGLAR 164

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A* Length = 576

 Score = 47.1 bits (112), Expect = 3e-06
 Identities = 41/185 (22%), Positives = 64/185 (34%), Gaps = 59/185 (31%)

Query: 23  INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMK--- 79
           + +N +R  R LG+GGF  V   +                  +    +     YA K   
Sbjct: 181 VTKNTFRQYRVLGKGGFGEVCACQV-----------------RATGKM-----YACKKLE 218

Query: 80  KVLIQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAY----LLFP 135
           K  I+  +   M   E ++    + R ++ L                   AY     L  
Sbjct: 219 KKRIKKRKGEAMALNEKQILEKVNSRFVVSL-----------------AYAYETKDALCL 261

Query: 136 VHLD----GTLLDHAKVMQTKKEFFSTSDVLQIFY--QICAGLKHMHSLEPPYAHNDVKP 189
           V L     G L  H  +    +  F  +    +FY  +IC GL+ +H     Y   D+KP
Sbjct: 262 V-LTLMNGGDLKFH--IYHMGQAGFPEARA--VFYAAEICCGLEDLHRERIVY--RDLKP 314

Query: 190 GNILI 194
            NIL+
Sbjct: 315 ENILL 319

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} Length = 319

 Score = 46.6 bits (111), Expect = 3e-06
 Identities = 35/201 (17%), Positives = 64/201 (31%), Gaps = 63/201 (31%)

Query: 23  INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVL 82
           I   +  I   +G+G F  VY              G    +V            A++ + 
Sbjct: 30  IPFEQLEIGELIGKGRFGQVY-------------HGRWHGEV------------AIRLID 64

Query: 83  IQNN--EQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHL-- 138
           I+ +  +QL+  + E+       H N++  +                     + P HL  
Sbjct: 65  IERDNEDQLKAFKREVMAYRQTRHENVVLFM------------------GACMSPPHLAI 106

Query: 139 ------DGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNI 192
                   TL      ++  K     +   QI  +I  G+ ++H+      H D+K  N+
Sbjct: 107 ITSLCKGRTLYSV---VRDAKIVLDVNKTRQIAQEIVKGMGYLHA--KGILHKDLKSKNV 161

Query: 193 LITCRKGQPPLAILMDFGSAR 213
                K      ++ DFG   
Sbjct: 162 FYDNGK-----VVITDFGLFS 177

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A Length = 290

 Score = 46.5 bits (111), Expect = 3e-06
 Identities = 35/191 (18%), Positives = 66/191 (34%), Gaps = 42/191 (21%)

Query: 23  INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVL 82
           +  +    + +LG G +  V  ++                      H+      A+K++ 
Sbjct: 4   VKADDLEPIMELGRGAYGVVEKMR----------------------HVPSGQIMAVKRIR 41

Query: 83  IQNNEQ-LEMVREEIRVS-SLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPV-HLD 139
              N Q  + +  ++ +S                 +       G+   E  +   +  +D
Sbjct: 42  ATVNSQEQKRLLMDLDISMRTVDCPF--------TVTFY----GALFREGDVWICMELMD 89

Query: 140 GTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKG 199
            +L    K +  K +      + +I   I   L+H+HS +    H DVKP N+LI    G
Sbjct: 90  TSLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLHS-KLSVIHRDVKPSNVLIN-ALG 147

Query: 200 QPPLAILMDFG 210
           Q  +    DFG
Sbjct: 148 QVKMC---DFG 155

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* Length = 360

 Score = 46.0 bits (109), Expect = 5e-06
 Identities = 34/191 (17%), Positives = 68/191 (35%), Gaps = 46/191 (24%)

Query: 23  INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVL 82
           + ++ +  + +LG G    V+ V                       H       A K + 
Sbjct: 30  LKDDDFEKISELGAGNGGVVFKVS----------------------HKPSGLVMARKLIH 67

Query: 83  IQNNEQ-LEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPV-HLDG 140
           ++        +  E++V    +           I+       G++  +  +   + H+DG
Sbjct: 68  LEIKPAIRNQIIRELQVLHECNSPY--------IVGFY----GAFYSDGEISICMEHMDG 115

Query: 141 TLLDHAKVMQTKKEFFSTSDVL-QIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKG 199
             LD  +V++          +L ++   +  GL ++   +    H DVKP NIL+   +G
Sbjct: 116 GSLD--QVLKKAGRI--PEQILGKVSIAVIKGLTYLRE-KHKIMHRDVKPSNILVN-SRG 169

Query: 200 QPPLAILMDFG 210
           +  L    DFG
Sbjct: 170 EIKLC---DFG 177

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A* Length = 327

 Score = 45.8 bits (109), Expect = 5e-06
 Identities = 33/198 (16%), Positives = 63/198 (31%), Gaps = 42/198 (21%)

Query: 17  GGGDVW-INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGT 75
                W       + L ++G G +  V  +                       H      
Sbjct: 12  SPEQHWDFTAEDLKDLGEIGRGAYGSVNKMV----------------------HKPSGQI 49

Query: 76  YAMKKVLIQNNEQ-LEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLF 134
            A+K++    +E+  + +  ++ V        ++   D   I V+    G+   E     
Sbjct: 50  MAVKRIRSTVDEKEQKQLLMDLDV--------VMRSSDCPYI-VQF--YGALFREGDCWI 98

Query: 135 PV-HLDGTLLDHAKVMQTKKEFFSTSDVL-QIFYQICAGLKHMHSLEPPYAHNDVKPGNI 192
            +  +  +     K + +  +     ++L +I       L H+        H D+KP NI
Sbjct: 99  CMELMSTSFDKFYKYVYSVLDDVIPEEILGKITLATVKALNHLKE-NLKIIHRDIKPSNI 157

Query: 193 LITCRKGQPPLAILMDFG 210
           L+  R G   L    DFG
Sbjct: 158 LLD-RSGNIKLC---DFG 171

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A* Length = 323

 Score = 45.0 bits (107), Expect = 9e-06
 Identities = 36/168 (21%), Positives = 63/168 (37%), Gaps = 37/168 (22%)

Query: 27  RYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNN 86
            + +++ LGEG +  V L    VT +A A       K+ D     D              
Sbjct: 8   DWDLVQTLGEGAYGEVQLAVNRVTEEAVAV------KIVDMKRAVDC------------- 48

Query: 87  EQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHA 146
              E +++EI ++ + +H N++    +        Q        YL       G L D  
Sbjct: 49  --PENIKKEICINKMLNHENVVKF--YGHRREGNIQ--------YLFLEYCSGGELFDRI 96

Query: 147 KVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILI 194
                        D  + F+Q+ AG+ ++H +     H D+KP N+L+
Sbjct: 97  ----EPDIGMPEPDAQRFFHQLMAGVVYLHGIG--ITHRDIKPENLLL 138

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A* Length = 330

 Score = 44.7 bits (106), Expect = 1e-05
 Identities = 37/189 (19%), Positives = 63/189 (33%), Gaps = 40/189 (21%)

Query: 26  NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN 85
             +R+ +++G G F  + L K                      +L  +   A+K      
Sbjct: 9   PNFRVGKKIGCGNFGELRLGK----------------------NLYTNEYVAIK------ 40

Query: 86  NEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDH 145
              LE    + R   L         L       +    G      Y    + L G  L+ 
Sbjct: 41  ---LE--PMKSRAPQLHLEYRFYKQLGSGDGIPQVYYFG--PCGKYNAMVLELLGPSLED 93

Query: 146 AKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILI-TCRKGQPPLA 204
              +  +   FS   VL I  Q+ + ++++HS      + DVKP N LI         + 
Sbjct: 94  LFDLCDRT--FSLKTVLMIAIQLISRMEYVHSKN--LIYRDVKPENFLIGRPGNKTQQVI 149

Query: 205 ILMDFGSAR 213
            ++DF  A+
Sbjct: 150 HIIDFALAK 158

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7} Length = 360

 Score = 43.8 bits (104), Expect = 3e-05
 Identities = 35/249 (14%), Positives = 71/249 (28%), Gaps = 93/249 (37%)

Query: 6   SGLNALYDSVNGGGDVWINE---NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLAN 62
             L    D               N + ++R++G+G F  V                    
Sbjct: 12  ENLYFQGDDEIVHFSWKKGMLLNNAFLVIRKMGDGTFGRVL------------------- 52

Query: 63  KVKDPSHLSDDGTYAMKKVLIQNNEQ-----------LEMVREE-------IRVSSLFSH 104
             +    + +   YA+K  +++N ++           L+ ++ +       ++    F +
Sbjct: 53  LCQH---IDNKKYYAVK--VVRNIKKYTRSAKIEADILKKIQNDDINNNNIVKYHGKFMY 107

Query: 105 RNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQI 164
            +      H  +                 F   L  +L +     +     F   D+   
Sbjct: 108 YD------HMCLI----------------FEP-LGPSLYEIIT--RNNYNGFHIEDIKLY 142

Query: 165 FYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAI------------------- 205
             +I   L ++  +     H D+KP NIL+     +  L                     
Sbjct: 143 CIEILKALNYLRKMS--LTHTDLKPENILLDDPYFEKSLITVRRVTDGKKIQIYRTKSTG 200

Query: 206 --LMDFGSA 212
             L+DFG A
Sbjct: 201 IKLIDFGCA 209

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A* Length = 339

 Score = 43.8 bits (104), Expect = 3e-05
 Identities = 46/228 (20%), Positives = 71/228 (31%), Gaps = 86/228 (37%)

Query: 19  GDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAM 78
           GDV     RY I+  LGEG F  V                    +  D  H +     A+
Sbjct: 9   GDVL--SARYEIVDTLGEGAFGKVV-------------------ECID--HKAGGRHVAV 45

Query: 79  KKVLIQNNEQ-----------LEMVREE--------IRVSSLFSHRNLLPLLDHAIIAVK 119
           K  +++N ++           LE +           +++   F H        H  I   
Sbjct: 46  K--IVKNVDRYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEHHG------HICIV-- 95

Query: 120 ANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLE 179
                         F + L  +  D  K  +     F    + ++ YQIC  +  +HS +
Sbjct: 96  --------------FEL-LGLSTYDFIK--ENGFLPFRLDHIRKMAYQICKSVNFLHSNK 138

Query: 180 PPYAHNDVKPGNILITCRKGQPPLAI---------------LMDFGSA 212
               H D+KP NIL                           ++DFGSA
Sbjct: 139 --LTHTDLKPENILFVQSDYTEAYNPKIKRDERTLINPDIKVVDFGSA 184

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A Length = 361

 Score = 43.1 bits (102), Expect = 4e-05
 Identities = 37/191 (19%), Positives = 66/191 (34%), Gaps = 55/191 (28%)

Query: 27  RYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNN 86
           RY  ++ +G G F    L+++ +T +           V            A+K       
Sbjct: 21  RYDFVKDIGSGNFGVARLMRDKLTKE----------LV------------AVK---YIER 55

Query: 87  EQL--EMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLD----G 140
                E V+ EI       H N++      +I    +           L  + ++    G
Sbjct: 56  GAAIDENVQREIINHRSLRHPNIVRF--KEVILTPTH-----------LAII-MEYASGG 101

Query: 141 TLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQ 200
            L +           FS  +    F Q+ +G+ + HS++    H D+K  N L+    G 
Sbjct: 102 ELYERI----CNAGRFSEDEARFFFQQLLSGVSYCHSMQ--ICHRDLKLENTLLD---GS 152

Query: 201 PPLAI-LMDFG 210
           P   + + DFG
Sbjct: 153 PAPRLKICDFG 163

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ... Length = 350

 Score = 43.0 bits (102), Expect = 5e-05
 Identities = 47/192 (24%), Positives = 75/192 (39%), Gaps = 53/192 (27%)

Query: 28  YRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMK---KVLIQ 84
           +  ++ LG G F  V LVK                  K+  +      YAMK   K  + 
Sbjct: 43  FDRIKTLGTGSFGRVMLVKH-----------------KESGNH-----YAMKILDKQKVV 80

Query: 85  NNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEA--YLLFPVHLDGTL 142
             +Q+E    E R+    +   L+ L            E S+K  +  Y++      G +
Sbjct: 81  KLKQIEHTLNEKRILQAVNFPFLVKL------------EFSFKDNSNLYMVMEYVAGGEM 128

Query: 143 LDHAKVMQTKKEFFSTSDVLQIFY--QICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQ 200
             H   ++    F   S+    FY  QI    +++HSL+  Y   D+KP N+LI  ++G 
Sbjct: 129 FSH---LRRIGRF---SEPHARFYAAQIVLTFEYLHSLDLIY--RDLKPENLLID-QQGY 179

Query: 201 PPLAILMDFGSA 212
             +    DFG A
Sbjct: 180 IQVT---DFGFA 188

>3pvu_A Beta-adrenergic receptor kinase 1; transferase, serine/threonine-protein kinase, ATP-binding, I membrane; HET: QRW; 2.48A {Bos taurus} PDB: 3psc_A* 3pvw_A* 1omw_A 1ym7_A 2bcj_A* 3cik_A 3krw_A* 3krx_A* 1bak_A Length = 695

 Score = 42.9 bits (101), Expect = 6e-05
 Identities = 44/200 (22%), Positives = 69/200 (34%), Gaps = 60/200 (30%)

Query: 23  INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMK--- 79
           +  N + + R +G GGF  VY  +                   D   +     YAMK   
Sbjct: 186 LTMNDFSVHRIIGRGGFGEVYGCR-----------------KADTGKM-----YAMKCLD 223

Query: 80  KVLIQNNEQLEMVREEIRV---SSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPV 136
           K  I+  +   +   E  +    S      ++ +         A        +   +   
Sbjct: 224 KKRIKMKQGETLALNERIMLSLVSTGDCPFIVCM--SY-----AFHT---PDKLSFI--- 270

Query: 137 HLD----GTLLDHAKVMQTKKEFFSTSDVLQIFY--QICAGLKHMHSLEPPYAHNDVKPG 190
            LD    G L  H      +   FS +D+   FY  +I  GL+HMH+    Y   D+KP 
Sbjct: 271 -LDLMNGGDLHYHLS----QHGVFSEADM--RFYAAEIILGLEHMHNRFVVY--RDLKPA 321

Query: 191 NILITCRKGQPPLAILMDFG 210
           NIL+    G   ++   D G
Sbjct: 322 NILLD-EHGHVRIS---DLG 337

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens} Length = 384

 Score = 42.3 bits (100), Expect = 9e-05
 Identities = 42/200 (21%), Positives = 73/200 (36%), Gaps = 57/200 (28%)

Query: 23  INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMK--- 79
           +N + + ILR +G+G F  V +V++                  D   +     YAMK   
Sbjct: 12  VNFDHFEILRAIGKGSFGKVCIVQK-----------------NDTKKM-----YAMKYMN 49

Query: 80  KVLIQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLD 139
           K       ++  V +E           ++  L+H  +    N   S++ E  +   V +D
Sbjct: 50  KQKCVERNEVRNVFKE---------LQIMQGLEHPFL---VNLWYSFQDEEDMFM-V-VD 95

Query: 140 ----GTLLDHAKVMQTKKEFFSTSDVLQIFY--QICAGLKHMHSLEPPYAHNDVKPGNIL 193
               G L  H   +Q +   F    V    +  ++   L ++ +      H D+KP NIL
Sbjct: 96  LLLGGDLRYH---LQ-QNVHFKEETV--KLFICELVMALDYLQNQR--IIHRDMKPDNIL 147

Query: 194 ITCRKGQPPLAILMDFGSAR 213
           +    G      + DF  A 
Sbjct: 148 LD-EHGH---VHITDFNIAA 163

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7 Length = 355

 Score = 40.7 bits (96), Expect = 3e-04
 Identities = 46/193 (23%), Positives = 75/193 (38%), Gaps = 58/193 (30%)

Query: 30  ILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAM----KKVLIQN 85
           +L+ LG G +  V+LV++                  D   L     YAM    K  ++Q 
Sbjct: 58  LLKVLGTGAYGKVFLVRKISG--------------HDTGKL-----YAMKVLKKATIVQK 98

Query: 86  NEQLEMVREEIRVSSLFSHRNLLPLLDHA--IIAVKANQEGSWKHEAYLLFPVHLD---- 139
            +  E  R E         R +L  +  +  ++ +      +++ E  L   + LD    
Sbjct: 99  AKTTEHTRTE---------RQVLEHIRQSPFLVTLHY----AFQTETKLHL-I-LDYING 143

Query: 140 GTLLDHAKVMQTKKEFFSTSDVLQIFY--QICAGLKHMHSLEPPYAHNDVKPGNILITCR 197
           G L  H   +  ++E F+  +V    Y  +I   L+H+H L   Y   D+K  NIL+   
Sbjct: 144 GELFTH---LS-QRERFTEHEVQ--IYVGEIVLALEHLHKLGIIY--RDIKLENILLD-S 194

Query: 198 KGQPPLAILMDFG 210
            G   L    DFG
Sbjct: 195 NGHVVLT---DFG 204

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A* Length = 289

 Score = 39.6 bits (93), Expect = 5e-04
 Identities = 35/196 (17%), Positives = 63/196 (32%), Gaps = 36/196 (18%)

Query: 23  INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVL 82
           I          LG+G F  ++               G+  +V D      +    +K + 
Sbjct: 5   IRNEDLIFNESLGQGTFTKIFK--------------GVRREVGDYGQ-LHETEVLLKVLD 49

Query: 83  IQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTL 142
             +    E   E   + S  SH++L+         V    +     E  L+      G+L
Sbjct: 50  KAHRNYSESFFEAASMMSKLSHKHLVLN-----YGVCVCGD-----ENILVQEFVKFGSL 99

Query: 143 LDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPP-YAHNDVKPGNILITCRKGQP 201
             +   ++  K   +    L++  Q+ A    MH LE     H +V   NIL+   + + 
Sbjct: 100 DTY---LKKNKNCINILWKLEVAKQLAAA---MHFLEENTLIHGNVCAKNILLIREEDRK 153

Query: 202 PLAILM----DFGSAR 213
                     D G + 
Sbjct: 154 TGNPPFIKLSDPGISI 169

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* Length = 377

 Score = 39.5 bits (93), Expect = 6e-04
 Identities = 36/203 (17%), Positives = 72/203 (35%), Gaps = 57/203 (28%)

Query: 20  DVW-INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAM 78
           D W +N     +  Q+G G F  V+               G                 A+
Sbjct: 107 DKWVLNHEDLVLGEQIGRGNFGEVFS--------------GRLRADNTL--------VAV 144

Query: 79  K--KVLIQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPV 136
           K  +  +  + + + ++ E R+   +SH N++ L     I V   ++           P+
Sbjct: 145 KSCRETLPPDLKAKFLQ-EARILKQYSHPNIVRL-----IGVCTQKQ-----------PI 187

Query: 137 HL------DGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPG 190
           ++       G  L     ++T+        +LQ+     AG++++ S      H D+   
Sbjct: 188 YIVMELVQGGDFLTF---LRTEGARLRVKTLLQMVGDAAAGMEYLESK--CCIHRDLAAR 242

Query: 191 NILITCRKGQPPLAILMDFGSAR 213
           N L+     +  +  + DFG +R
Sbjct: 243 NCLV----TEKNVLKISDFGMSR 261

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A* Length = 336

 Score = 39.3 bits (92), Expect = 8e-04
 Identities = 34/200 (17%), Positives = 61/200 (30%), Gaps = 56/200 (28%)

Query: 19  GDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAM 78
            +     +      ++G G F  V+                                 A+
Sbjct: 51  YEYREEVHWMTHQPRVGRGSFGEVHR--------------MK--------DKQTGFQCAV 88

Query: 79  KKVLIQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYL-LFPVH 137
           KKV ++         EE+   +  S   ++PL             G+ +   ++ +F   
Sbjct: 89  KKVRLEVFRV-----EELVACAGLSSPRIVPLY------------GAVREGPWVNIFMEL 131

Query: 138 LDG----TLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNIL 193
           L+G     L+                  L    Q   GL+++H+      H DVK  N+L
Sbjct: 132 LEGGSLGQLIKQMGC-------LPEDRALYYLGQALEGLEYLHTRR--ILHGDVKADNVL 182

Query: 194 ITCRKGQPPLAILMDFGSAR 213
           ++    +  L    DFG A 
Sbjct: 183 LSSDGSRAALC---DFGHAL 199

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A* Length = 313

 Score = 39.2 bits (92), Expect = 9e-04
 Identities = 36/203 (17%), Positives = 68/203 (33%), Gaps = 43/203 (21%)

Query: 20  DVW-INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAM 78
           +   I+ N   + + LGEG F  V                G   +    S        A+
Sbjct: 27  EDVVIDRNLLILGKILGEGEFGSVME--------------GNLKQEDGTSL-----KVAV 67

Query: 79  K--KVLIQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPV 136
           K  K+   +  ++E    E      FSH N++ LL      V          +  ++ P 
Sbjct: 68  KTMKLDNSSQREIEEFLSEAACMKDFSHPNVIRLL-----GVCIEMSSQGIPKPMVILPF 122

Query: 137 HLDGTLLDH--AKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILI 194
              G L  +     ++T  +      +L+    I  G++++ +    + H D+   N ++
Sbjct: 123 MKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLSNRN--FLHRDLAARNCML 180

Query: 195 ----TCRKGQPPLAILMDFGSAR 213
               T            DFG ++
Sbjct: 181 RDDMTVCVA--------DFGLSK 195

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	262
4aw0_A	311	HPDK1, 3-phosphoinositide-dependent protein kinase	100.0
4b9d_A	350	Serine/threonine-protein kinase NEK1; transferase,	100.0
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	100.0
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
3hyh_A	275	Carbon catabolite-derepressing protein kinase; kin	100.0
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	100.0
3ubd_A	304	Ribosomal protein S6 kinase alpha-3; kinase-inhibi	100.0
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	100.0
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	100.0
4aoj_A	329	High affinity nerve growth factor receptor; transf	100.0
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	100.0
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	100.0
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	100.0
4b99_A	398	Mitogen-activated protein kinase 7; transferase, i	100.0
3hmm_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	100.0
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	100.0
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	100.0
4f9c_A	361	Cell division cycle 7-related protein kinase; Ser/	100.0
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	100.0
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	100.0
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	100.0
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	100.0
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	100.0
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	100.0
3soc_A	322	Activin receptor type-2A; structural genomics cons	100.0
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	100.0
3zgw_A	347	Maternal embryonic leucine zipper kinase; transfer	100.0
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	100.0
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	100.0
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	100.0
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	100.0
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	100.0
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	100.0
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	100.0
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	100.0
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	100.0
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	100.0
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	100.0
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	100.0
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	100.0
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	100.0
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	100.0
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	100.0
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	100.0
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	100.0
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	100.0
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	100.0
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	100.0
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	100.0
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	100.0
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	100.0
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	100.0
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	100.0
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	100.0
3o0g_A	292	Cell division protein kinase 5; kinase activator c	100.0
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	100.0
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	100.0
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	100.0
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	100.0
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	100.0
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	100.0
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	100.0
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	100.0
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	100.0
4hcu_A	269	Tyrosine-protein kinase ITK/TSK; transferase-trans	100.0
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	100.0
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	100.0
3ork_A	311	Serine/threonine protein kinase; structural genomi	100.0
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	100.0
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	100.0
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	100.0
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	100.0
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	100.0
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	100.0
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	100.0
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	100.0
3niz_A	311	Rhodanese family protein; structural genomics, str	100.0
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	100.0
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	100.0
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	100.0
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	100.0
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	100.0
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	100.0
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	100.0
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	100.0
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	100.0
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	100.0
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	100.0
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	100.0
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	100.0
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	100.0
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	100.0
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	100.0
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	100.0
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	100.0
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	100.0
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	100.0
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	100.0
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	100.0
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	100.0
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	100.0
3rp9_A	458	Mitogen-activated protein kinase; structural genom	100.0
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	100.0
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	100.0
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	100.0
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	100.0
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	100.0
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	100.0
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	100.0
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	100.0
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	100.0
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	100.0
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	100.0
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	100.0
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	100.0
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	100.0
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	100.0
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	100.0
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	100.0
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	100.0
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	100.0
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	100.0
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	100.0
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	100.0
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	100.0
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	100.0
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	100.0
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	100.0
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	100.0
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	100.0
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	100.0
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	100.0
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	100.0
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	100.0
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	100.0
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	100.0
3bhy_A	283	Death-associated protein kinase 3; death associate	100.0
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	100.0
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	100.0
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	100.0
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	100.0
3q4u_A	301	Activin receptor type-1; structural genomics conso	100.0
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	100.0
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	100.0
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	100.0
3fme_A	290	Dual specificity mitogen-activated protein kinase;	100.0
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	100.0
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	100.0
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	100.0
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	100.0
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	100.0
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	100.0
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	100.0
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	100.0
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	100.0
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	100.0
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	100.0
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	100.0
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	100.0
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	100.0
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	100.0
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	100.0
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	100.0
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	100.0
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	100.0
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	100.0
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	100.0
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	100.0
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	100.0
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	100.0
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	100.0
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	100.0
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	100.0
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	100.0
3an0_A	340	Dual specificity mitogen-activated protein kinase;	100.0
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	100.0
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	100.0
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	100.0
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	99.98
3pls_A	298	Macrophage-stimulating protein receptor; protein k	99.98
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	99.98
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	99.98
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	99.98
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	99.98
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	99.98
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	99.98
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	99.98
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	99.98
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	99.98
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	99.98
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	99.98
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	99.98
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	99.98
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	99.98
2a19_B	284	Interferon-induced, double-stranded RNA-activated	99.98
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	99.98
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	99.98
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	99.98
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	99.98
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	99.97
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	99.97
4exu_A	371	Mitogen-activated protein kinase 13; P38 kinase, t	99.97
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	99.97
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	99.97
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	99.97
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	99.97
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	99.97
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	99.97
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	99.97
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	99.97
4hgt_A	296	Casein kinase I isoform delta; CK1D, inhibitor, tr	99.97
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	99.97
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	99.97
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	99.97
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	99.97
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	99.97
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	99.97
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	99.97
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	99.97
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	99.97
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	99.97
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	99.97
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	99.97
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	99.97
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	99.97
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	99.97
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	99.97
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.97
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	99.97
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	99.97
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	99.97
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	99.97
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	99.97
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	99.97
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	99.97
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	99.97
2dyl_A	318	Dual specificity mitogen-activated protein kinase	99.97
3aln_A	327	Dual specificity mitogen-activated protein kinase;	99.97
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	99.97
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	99.97
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	99.97
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	99.97
3uqc_A	286	Probable conserved transmembrane protein; structur	99.97
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	99.97
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	99.97
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	99.96
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	99.96
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	99.96
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	99.96
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.95
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	99.9
1zar_A	282	RIO2 kinase; serine kinase, winged-helix, RIO doma	99.9
1zth_A	258	RIO1 serine protein kinase; ribosome biogenesis, r	99.86
4gyi_A	397	RIO2 kinase; protein kinase, ADP complex, phosphoa	99.74
3tm0_A	263	Aminoglycoside 3'-phosphotransferase; protein kina	99.35
3dxp_A	359	Putative acyl-COA dehydrogenase; protein kinase-li	99.1
1nd4_A	264	Aminoglycoside 3'-phosphotransferase; protein kina	99.04
3sg8_A	304	APH(2'')-ID; antibiotic resistance enzyme, transfe	98.77
3r70_A	320	Aminoglycoside phosphotransferase; structural geno	98.63
3tdw_A	306	Gentamicin resistance protein; kinase, phosphoryl	98.49
4gkh_A	272	Aminoglycoside 3'-phosphotransferase APHA1-IAB; py	98.48
3d1u_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	98.44
3ovc_A	362	Hygromycin-B 4-O-kinase; aminoglycoside phosphotra	98.24
2olc_A	397	MTR kinase, methylthioribose kinase; kinase ADP-2H	98.13
3ats_A	357	Putative uncharacterized protein; hypothetical pro	98.06
3f7w_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	97.98
2q83_A	346	YTAA protein; 2635576, structural genomics, joint	97.94
3jr1_A	312	Putative fructosamine-3-kinase; YP_719053.1, struc	97.25
3dxq_A	301	Choline/ethanolamine kinase family protein; NP_106	97.09
2pyw_A	420	Uncharacterized protein; 5-methylthioribose kinase	95.91
3csv_A	333	Aminoglycoside phosphotransferase; YP_614837.1, ph	94.02
2ppq_A	322	HSK, HK, homoserine kinase; structural genomics, M	94.01
3c5i_A	369	Choline kinase; choline, kinase, malaria, transfer	93.44
1zyl_A	328	Hypothetical protein YIHE; putative protein kinase	93.42
3i1a_A	339	Spectinomycin phosphotransferase; protein kinase,	93.04
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	92.9
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	92.5
2qg7_A	458	Ethanolamine kinase PV091845; malaria, SGC, struct	92.06
4aoj_A	329	High affinity nerve growth factor receptor; transf	91.99
3feg_A	379	Choline/ethanolamine kinase; non-protein kinase, c	91.95
1nw1_A	429	Choline kinase (49.2 KD); phospholipid synthesis,	91.94
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	91.62
3f2s_A	401	CK, chetk-alpha, choline kinase alpha; non-protein	90.61
3g15_A	401	CK, chetk-alpha, choline kinase alpha; non-protein	89.89
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	88.53
3ubd_A	304	Ribosomal protein S6 kinase alpha-3; kinase-inhibi	87.94
4f9c_A	361	Cell division cycle 7-related protein kinase; Ser/	87.81
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	87.62
4b9d_A	350	Serine/threonine-protein kinase NEK1; transferase,	87.45
4b99_A	398	Mitogen-activated protein kinase 7; transferase, i	86.92
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	86.48
3mes_A	424	Choline kinase; malaria, structural genomics, stru	86.41
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	84.72
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	84.44
4aw0_A	311	HPDK1, 3-phosphoinositide-dependent protein kinase	83.91
3hyh_A	275	Carbon catabolite-derepressing protein kinase; kin	82.99
2yle_A	229	Protein spire homolog 1; actin-binding protein, ac	81.09
3uqc_A	286	Probable conserved transmembrane protein; structur	81.05
4ano_A	219	ESSB; membrane protein, membrane secretion, ESS ty	80.92

>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...

Probab=100.00  E-value=3.5e-45  Score=298.14  Aligned_cols=191  Identities=23%  Similarity=0.306  Sum_probs=161.1

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc---chHHHHHHHHHHHHhhh
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ---NNEQLEMVREEIRVSSL  101 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~---~~~~~~~~~~E~~~l~~  101 (262)
                      .++|++.+.||+|+||.||+|++..+++                      .||+|++...   .....+.+.+|+.+++.
T Consensus        31 ~~dy~i~~~lG~G~fg~V~~a~~~~~~~----------------------~~AiK~i~k~~~~~~~~~~~~~~E~~il~~   88 (311)
T 4aw0_A           31 PEDFKFGKILGEGSFSTVVLARELATSR----------------------EYAIKILEKRHIIKENKVPYVTRERDVMSR   88 (311)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEETTTCC----------------------EEEEEEEEHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             ccccEEEEEEecccCeEEEEEEECCCCC----------------------EEEEEEEEHHHCCCHHHHHHHHHHHHHHHh
Confidence            3679999999999999999999988766                      5777766432   22334678999999999


Q ss_pred             CCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCC
Q 024842          102 FSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPP  181 (262)
Q Consensus       102 l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~  181 (262)
                      ++||||++++++|          .+....|++|||+.+|+|.+++.    ....+++..++.++.||+.||+|||+++  
T Consensus        89 l~HpnIv~l~~~~----------~~~~~~yivmEy~~gG~L~~~i~----~~~~l~e~~~~~~~~qi~~al~ylH~~~--  152 (311)
T 4aw0_A           89 LDHPFFVKLYFTF----------QDDEKLYFGLSYAKNGELLKYIR----KIGSFDETCTRFYTAEIVSALEYLHGKG--  152 (311)
T ss_dssp             CCCTTBCCEEEEE----------ECSSEEEEEECCCTTEEHHHHHH----HHSSCCHHHHHHHHHHHHHHHHHHHHTT--
T ss_pred             CCCCCCCeEEEEE----------EeCCEEEEEEecCCCCCHHHHHH----HcCCCCHHHHHHHHHHHHHHHHHHHHCC--
Confidence            9999999999998          44678999999999999999986    4456999999999999999999999999  


Q ss_pred             eeecCCCCCcEEEecCCCCCCceEEeeccceeecccc-------CccCcccCCcccchhhhhhhhhhhhhcCcccchhee
Q 024842          182 YAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSK-------FALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQIL  254 (262)
Q Consensus       182 ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~-------~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~  254 (262)
                      |+||||||+|||++.++    .+||+|||+|+.....       ...|++.|++||-+..-++.     ...|+||+|++
T Consensus       153 IiHRDlKPeNILl~~~g----~vKl~DFGla~~~~~~~~~~~~~~~~GTp~YmAPEvl~~~~y~-----~~~DiWSlGvi  223 (311)
T 4aw0_A          153 IIHRDLKPENILLNEDM----HIQITDFGTAKVLSPESKQARANSFVGTAQYVSPELLTEKSAC-----KSSDLWALGCI  223 (311)
T ss_dssp             EECSCCSGGGEEECTTS----CEEECCCTTCEECCTTTTCCCBCCCCSCGGGCCHHHHHHSCBC-----HHHHHHHHHHH
T ss_pred             CccCCCCHHHeEEcCCC----CEEEEEcCCceecCCCCCcccccCcccCcccCCHHHHcCCCCC-----cHHHHHHHHHH
Confidence            99999999999998877    6999999999976432       23589999999977544332     23689999999


Q ss_pred             heecccCC
Q 024842          255 MRELMFGR  262 (262)
Q Consensus       255 ~~~l~~G~  262 (262)
                      +|+|++|+
T Consensus       224 lyeml~G~  231 (311)
T 4aw0_A          224 IYQLVAGL  231 (311)
T ss_dssp             HHHHHHSS
T ss_pred             HHHHHhCC
Confidence            99999985

>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*

Probab=100.00  E-value=7e-45  Score=300.99  Aligned_cols=193  Identities=26%  Similarity=0.388  Sum_probs=155.5

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc--chHHHHHHHHHHHHhhhC
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ--NNEQLEMVREEIRVSSLF  102 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~--~~~~~~~~~~E~~~l~~l  102 (262)
                      -++|++++.||+|+||.||+|++..+++                      .||+|++...  .....+.+.+|+.+++.+
T Consensus        23 me~Y~~~~~lG~G~fg~V~~a~~~~~~~----------------------~vAiK~i~~~~~~~~~~~~~~~E~~il~~l   80 (350)
T 4b9d_A           23 MEKYVRLQKIGEGSFGKAILVKSTEDGR----------------------QYVIKEINISRMSSKEREESRREVAVLANM   80 (350)
T ss_dssp             CCCEEEEEEC------CEEEEEETTTCC----------------------EEEEEEEECTTSCHHHHHHHHHHHHHHHHC
T ss_pred             ccceEEeEEEecCCCeEEEEEEECCCCC----------------------EEEEEEEehHHCCHHHHHHHHHHHHHHHHC
Confidence            3689999999999999999999987765                      6777776543  344567899999999999


Q ss_pred             CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCe
Q 024842          103 SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPY  182 (262)
Q Consensus       103 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~i  182 (262)
                      +||||+++++++          ...+..|++|||+.+|+|.+++...  ....+++..++.++.||+.||+|||+++  |
T Consensus        81 ~HpnIV~~~~~~----------~~~~~~yiVmEy~~gg~L~~~i~~~--~~~~~~e~~~~~~~~qi~~aL~ylH~~~--I  146 (350)
T 4b9d_A           81 KHPNIVQYRESF----------EENGSLYIVMDYCEGGDLFKRINAQ--KGVLFQEDQILDWFVQICLALKHVHDRK--I  146 (350)
T ss_dssp             CCTTBCCEEEEE----------EETTEEEEEEECCTTCBHHHHHHHT--TTCCCCHHHHHHHHHHHHHHHHHHHHTT--C
T ss_pred             CCCCCCcEEEEE----------EECCEEEEEEeCCCCCcHHHHHHHc--CCCCCCHHHHHHHHHHHHHHHHHHHHCC--e
Confidence            999999999998          3467899999999999999998632  3345899999999999999999999999  9


Q ss_pred             eecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-----ccCcccCCcccchhhhhhhhhhhhhcCcccchheehee
Q 024842          183 AHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRE  257 (262)
Q Consensus       183 vH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~  257 (262)
                      +||||||+|||++.++    .+||+|||+|+...+..     ..|++.|++||-+..-++.     ...||||+|+++||
T Consensus       147 iHRDlKp~NILl~~~g----~vKl~DFGla~~~~~~~~~~~~~~GT~~YmAPE~l~~~~y~-----~~~DiwSlGvilye  217 (350)
T 4b9d_A          147 LHRDIKSQNIFLTKDG----TVQLGDFGIARVLNSTVELARACIGTPYYLSPEICENKPYN-----NKSDIWALGCVLYE  217 (350)
T ss_dssp             EETTCCGGGEEECTTC----CEEECSTTEESCCCHHHHHHHHHHSCCTTCCHHHHTTCCCC-----HHHHHHHHHHHHHH
T ss_pred             eeccCCHHHEEECCCC----CEEEcccccceeecCCcccccccCCCccccCHHHHCCCCCC-----cHHHHHHHHHHHHH
Confidence            9999999999998877    69999999998765432     3589999999976543322     23688888888888


Q ss_pred             cccCC
Q 024842          258 LMFGR  262 (262)
Q Consensus       258 l~~G~  262 (262)
                      |++|+
T Consensus       218 mltG~  222 (350)
T 4b9d_A          218 LCTLK  222 (350)
T ss_dssp             HHHSS
T ss_pred             HHHCC
Confidence            88885

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=100.00  E-value=4.8e-45  Score=301.53  Aligned_cols=189  Identities=16%  Similarity=0.260  Sum_probs=158.7

Q ss_pred             CceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCCCC
Q 024842           26 NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSHR  105 (262)
Q Consensus        26 ~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~h~  105 (262)
                      +.|++.++||+|+||.||+|++..+++                      .||+|++........+.+.+|+.+++.++||
T Consensus        74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~----------------------~vAiK~i~~~~~~~~~~~~~Ei~il~~l~Hp  131 (346)
T 4fih_A           74 SYLDNFIKIGEGSTGIVCIATVRSSGK----------------------LVAVKKMDLRKQQRRELLFNEVVIMRDYQHE  131 (346)
T ss_dssp             GTEEEEEEEEECSSCEEEEEEETTTCC----------------------EEEEEEEEGGGCSSGGGGHHHHHHHHHCCCT
T ss_pred             HhcEEeEEeecCcCeEEEEEEECCCCC----------------------EEEEEEEecCchhHHHHHHHHHHHHHhCCCC
Confidence            569999999999999999999988766                      5777766544444446678999999999999


Q ss_pred             CccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeeec
Q 024842          106 NLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHN  185 (262)
Q Consensus       106 ~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~  185 (262)
                      ||++++++|          ...+..|++|||+.+|+|.+++.     ...+++..++.++.||+.||+|||+++  |+||
T Consensus       132 nIV~l~~~~----------~~~~~~~ivmEy~~gg~L~~~l~-----~~~l~e~~~~~~~~qi~~aL~ylH~~~--IiHR  194 (346)
T 4fih_A          132 NVVEMYNSY----------LVGDELWVVMEFLEGGALTDIVT-----HTRMNEEQIAAVCLAVLQALSVLHAQG--VIHR  194 (346)
T ss_dssp             TBCCEEEEE----------EETTEEEEEECCCTTEEHHHHHH-----HSCCCHHHHHHHHHHHHHHHHHHHHTT--EECC
T ss_pred             CCCcEEEEE----------EECCEEEEEEeCCCCCcHHHHHH-----cCCCCHHHHHHHHHHHHHHHHHHHHCC--cccc
Confidence            999999998          34678999999999999999885     235999999999999999999999999  9999


Q ss_pred             CCCCCcEEEecCCCCCCceEEeeccceeecccc-----CccCcccCCcccchhhhhhhhhhhhhcCcccchheeheeccc
Q 024842          186 DVKPGNILITCRKGQPPLAILMDFGSARPAQSK-----FALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMF  260 (262)
Q Consensus       186 dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~-----~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~  260 (262)
                      ||||+|||++.++    .+||+|||+|......     ...|++.|++||-+..-++.     ...||||+|+++|||++
T Consensus       195 DlKp~NILl~~~g----~vKl~DFGla~~~~~~~~~~~~~~GTp~YmAPEvl~~~~y~-----~~~DiWSlGvilyeml~  265 (346)
T 4fih_A          195 DIKSDSILLTHDG----RVKLSDFGFCAQVSKEVPRRKSLVGTPYWMAPELISRLPYG-----PEVDIWSLGIMVIEMVD  265 (346)
T ss_dssp             CCSGGGEEECTTC----CEEECCCTTCEECCSSSCCBCCCCSCGGGCCHHHHTTCCBC-----THHHHHHHHHHHHHHHH
T ss_pred             cCCHHHEEECCCC----CEEEecCcCceecCCCCCcccccccCcCcCCHHHHCCCCCC-----cHHHHHHHHHHHHHHHH
Confidence            9999999998877    6999999999876543     23688999999866443322     23688888888888888


Q ss_pred             CC
Q 024842          261 GR  262 (262)
Q Consensus       261 G~  262 (262)
                      |+
T Consensus       266 G~  267 (346)
T 4fih_A          266 GE  267 (346)
T ss_dssp             SS
T ss_pred             CC
Confidence            85

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=100.00  E-value=7.3e-44  Score=288.80  Aligned_cols=193  Identities=22%  Similarity=0.231  Sum_probs=156.5

Q ss_pred             eEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc--chHHHHHHHHHHHHhhhCCCC
Q 024842           28 YRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ--NNEQLEMVREEIRVSSLFSHR  105 (262)
Q Consensus        28 y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~--~~~~~~~~~~E~~~l~~l~h~  105 (262)
                      |++.++||+|+||.||+|++..++.                      .||+|++...  .....+.+.+|+.+++.++||
T Consensus        28 ~~~~~~iG~G~fg~Vy~a~~~~~~~----------------------~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~Hp   85 (290)
T 3fpq_A           28 LKFDIEIGRGSFKTVYKGLDTETTV----------------------EVAWCELQDRKLTKSERQRFKEEAEMLKGLQHP   85 (290)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTCC----------------------EEEEEEEEGGGSCHHHHHHHHHHHHHHHTCCCT
T ss_pred             EEeeeEEecCcCcEEEEEEECCCCe----------------------EEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCC
Confidence            4888999999999999999987765                      5677765433  344467899999999999999


Q ss_pred             CccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeeec
Q 024842          106 NLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHN  185 (262)
Q Consensus       106 ~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~  185 (262)
                      ||++++++|...      .......|++|||+.+|+|.+++.    +...+++..++.++.|++.||+|||+++++|+||
T Consensus        86 nIV~~~~~~~~~------~~~~~~~~lvmEy~~gg~L~~~l~----~~~~l~~~~~~~~~~qi~~aL~ylH~~~~~IiHR  155 (290)
T 3fpq_A           86 NIVRFYDSWEST------VKGKKCIVLVTELMTSGTLKTYLK----RFKVMKIKVLRSWCRQILKGLQFLHTRTPPIIHR  155 (290)
T ss_dssp             TBCCEEEEEEEE------ETTEEEEEEEEECCCSCBHHHHHH----HHSSCCHHHHHHHHHHHHHHHHHHHTSSSCCCCC
T ss_pred             CCCcEEEEEeec------cCCCcEEEEEEeCCCCCCHHHHHH----hcCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEec
Confidence            999999987310      122456899999999999999987    4456999999999999999999999987789999


Q ss_pred             CCCCCcEEEec-CCCCCCceEEeeccceeeccccC---ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecccC
Q 024842          186 DVKPGNILITC-RKGQPPLAILMDFGSARPAQSKF---ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMFG  261 (262)
Q Consensus       186 dikp~Nill~~-~~~~~~~~kl~Dfg~a~~~~~~~---~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~G  261 (262)
                      ||||+|||++. ++    .+||+|||+|+......   ..|++.|++||-+.. .     +....||||+|+++|||+||
T Consensus       156 DlKp~NILl~~~~g----~vKl~DFGla~~~~~~~~~~~~GTp~YmAPE~~~~-~-----y~~~~DiwSlGvilyelltg  225 (290)
T 3fpq_A          156 DLKCDNIFITGPTG----SVKIGDLGLATLKRASFAKAVIGTPEFMAPEMYEE-K-----YDESVDVYAFGMCMLEMATS  225 (290)
T ss_dssp             CCCGGGEEESSTTS----CEEECCTTGGGGCCTTSBEESCSSCCCCCGGGGGT-C-----CCTHHHHHHHHHHHHHHHHS
T ss_pred             ccChhheeEECCCC----CEEEEeCcCCEeCCCCccCCcccCccccCHHHcCC-C-----CCcHHHHHHHHHHHHHHHHC
Confidence            99999999974 44    69999999998654332   368999999995422 1     22346899999999999988


Q ss_pred             C
Q 024842          262 R  262 (262)
Q Consensus       262 ~  262 (262)
                      +
T Consensus       226 ~  226 (290)
T 3fpq_A          226 E  226 (290)
T ss_dssp             S
T ss_pred             C
Confidence            5

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=100.00  E-value=3.4e-44  Score=303.41  Aligned_cols=189  Identities=16%  Similarity=0.273  Sum_probs=158.5

Q ss_pred             CceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCCCC
Q 024842           26 NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSHR  105 (262)
Q Consensus        26 ~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~h~  105 (262)
                      +.|++.+.||+|+||.||+|++..+++                      .||+|++........+.+.+|+.+++.++||
T Consensus       151 ~~y~~~~~iG~G~fG~V~~a~~~~tg~----------------------~vAiK~i~~~~~~~~~~~~~Ei~il~~l~Hp  208 (423)
T 4fie_A          151 SYLDNFIKIGEGSTGIVCIATVRSSGK----------------------LVAVKKMDLRKQQRRELLFNEVVIMRDYQHE  208 (423)
T ss_dssp             GTEEEEEEEEECSSCEEEEEEETTTCC----------------------EEEEEEEESTTCSSGGGHHHHHHHHHHCCCT
T ss_pred             HhcEeeeEeccCcCcEEEEEEECCCCC----------------------EEEEEEEeccchhHHHHHHHHHHHHHhCCCC
Confidence            579999999999999999999988766                      5777766554444456688999999999999


Q ss_pred             CccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeeec
Q 024842          106 NLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHN  185 (262)
Q Consensus       106 ~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~  185 (262)
                      ||++++++|.          ..+.+|++|||+.+|+|.+++.     ...+++..++.++.||+.||+|||+++  |+||
T Consensus       209 nIV~l~~~~~----------~~~~~~iVmEy~~gG~L~~~i~-----~~~l~e~~~~~~~~qil~aL~ylH~~~--IiHR  271 (423)
T 4fie_A          209 NVVEMYNSYL----------VGDELWVVMEFLEGGALTDIVT-----HTRMNEEQIAAVCLAVLQALSVLHAQG--VIHR  271 (423)
T ss_dssp             TBCCEEEEEE----------ETTEEEEEEECCTTEEHHHHHH-----HSCCCHHHHHHHHHHHHHHHHHHHHTT--EECC
T ss_pred             CCCceEEEEE----------ECCEEEEEEeCCCCCcHHHHHh-----ccCCCHHHHHHHHHHHHHHHHHHHHCC--eecc
Confidence            9999999983          3678999999999999999885     234999999999999999999999999  9999


Q ss_pred             CCCCCcEEEecCCCCCCceEEeeccceeeccccC-----ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheeccc
Q 024842          186 DVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMF  260 (262)
Q Consensus       186 dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~  260 (262)
                      ||||+|||++.++    .+||+|||+|..+....     ..|++.|++||-+..-++.     ...||||+|+++|||++
T Consensus       272 DiKp~NILl~~~g----~vKl~DFGla~~~~~~~~~~~~~~GTp~YmAPEvl~~~~y~-----~~~DiWSlGvilyeml~  342 (423)
T 4fie_A          272 DIKSDSILLTHDG----RVKLSDFGFCAQVSKEVPRRKSLVGTPYWMAPELISRLPYG-----PEVDIWSLGIMVIEMVD  342 (423)
T ss_dssp             CCSTTTEEECTTC----CEEECCCTTCEECCSSCCCBCCCEECTTTCCHHHHTTCCBC-----THHHHHHHHHHHHHHHH
T ss_pred             cCCHHHEEEcCCC----CEEEecCccceECCCCCccccccccCcCcCCHHHHCCCCCC-----cHHHHHHHHHHHHHHHH
Confidence            9999999998877    69999999998765432     3588899999866443322     23588888888888888


Q ss_pred             CC
Q 024842          261 GR  262 (262)
Q Consensus       261 G~  262 (262)
                      |+
T Consensus       343 G~  344 (423)
T 4fie_A          343 GE  344 (423)
T ss_dssp             SS
T ss_pred             CC
Confidence            85

>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A

Probab=100.00  E-value=3.9e-44  Score=288.08  Aligned_cols=190  Identities=22%  Similarity=0.320  Sum_probs=146.8

Q ss_pred             CceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc---chHHHHHHHHHHHHhhhC
Q 024842           26 NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ---NNEQLEMVREEIRVSSLF  102 (262)
Q Consensus        26 ~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~---~~~~~~~~~~E~~~l~~l  102 (262)
                      ++|++.+.||+|+||.||+|++..+++                      .||+|++...   .....+.+.+|+.+++.+
T Consensus        13 g~Y~i~~~lG~G~fg~V~~~~~~~~~~----------------------~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l   70 (275)
T 3hyh_A           13 GNYQIVKTLGEGSFGKVKLAYHTTTGQ----------------------KVALKIINKKVLAKSDMQGRIEREISYLRLL   70 (275)
T ss_dssp             -CCEEEEEEEC---CCEEEEECTTTCC----------------------EEEEEEEECC------CHHHHHHHHHHHHHC
T ss_pred             eCeEEEEEEecCcCeEEEEEEECCCCC----------------------EEEEEEEeHHHcCCHHHHHHHHHHHHHHHHC
Confidence            589999999999999999999987765                      5777766433   223346788999999999


Q ss_pred             CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCe
Q 024842          103 SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPY  182 (262)
Q Consensus       103 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~i  182 (262)
                      +||||+++++++          ...+..|++|||+ +|+|.+++.    ....+++..++.++.||+.||+|||+++  |
T Consensus        71 ~HpnIv~~~~~~----------~~~~~~~ivmEy~-~g~L~~~l~----~~~~l~e~~~~~~~~qi~~al~ylH~~~--I  133 (275)
T 3hyh_A           71 RHPHIIKLYDVI----------KSKDEIIMVIEYA-GNELFDYIV----QRDKMSEQEARRFFQQIISAVEYCHRHK--I  133 (275)
T ss_dssp             CCTTBCCEEEEE----------ECSSEEEEEEECC-CEEHHHHHH----HSCSCCHHHHHHHHHHHHHHHHHHHHTT--C
T ss_pred             CCCCCCeEEEEE----------EECCEEEEEEeCC-CCCHHHHHH----HcCCCCHHHHHHHHHHHHHHHHHHHHCC--c
Confidence            999999999998          4467899999998 789998886    4566999999999999999999999999  9


Q ss_pred             eecCCCCCcEEEecCCCCCCceEEeeccceeeccccC----ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheec
Q 024842          183 AHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMREL  258 (262)
Q Consensus       183 vH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l  258 (262)
                      +||||||+|||++.++    .+||+|||+|+......    ..|++.|++||-+..-++.    ....||||+|+++|+|
T Consensus       134 iHRDiKP~NILl~~~~----~vkl~DFGla~~~~~~~~~~~~~GT~~Y~APE~~~~~~y~----~~~~DiwSlGvily~l  205 (275)
T 3hyh_A          134 VHRDLKPENLLLDEHL----NVKIADFGLSNIMTDGNFLKTSCGSPNYAAPEVISGKLYA----GPEVDVWSCGVILYVM  205 (275)
T ss_dssp             CCCCCCTTTEEECTTC----CEEECCSSCC---------------CTTSCHHHHSSSSCC----CTHHHHHHHHHHHHHH
T ss_pred             ccccCChHHeEECCCC----CEEEeecCCCeecCCCCccCCeeECcccCChhhhcCCCCC----CChhhhHHHHHHHHHH
Confidence            9999999999998776    69999999998765432    3688999999876443321    1135899999999999


Q ss_pred             ccCC
Q 024842          259 MFGR  262 (262)
Q Consensus       259 ~~G~  262 (262)
                      ++|+
T Consensus       206 ltg~  209 (275)
T 3hyh_A          206 LCRR  209 (275)
T ss_dssp             HHSS
T ss_pred             HHCC
Confidence            9985

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=100.00  E-value=9.6e-44  Score=289.88  Aligned_cols=201  Identities=19%  Similarity=0.245  Sum_probs=154.4

Q ss_pred             eecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhh
Q 024842           22 WINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSL  101 (262)
Q Consensus        22 ~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~  101 (262)
                      .|..++|.+.+.||+|+||.||+|++......                 .++..||+|++........+.+.+|+.+++.
T Consensus         9 ~I~r~~~~l~~~lG~G~fG~Vy~a~~~~~~~~-----------------~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~   71 (299)
T 4asz_A            9 HIKRHNIVLKRELGEGAFGKVFLAECYNLCPE-----------------QDKILVAVKTLKDASDNARKDFHREAELLTN   71 (299)
T ss_dssp             BCCGGGEEEEEEEEC--CCCEEEEEECSCC---------------------CEEEEEEEECSCCHHHHHHHHHHHHHHTT
T ss_pred             ccCHHHeEEeeEEeeCCCcEEEEEEECCcccC-----------------CCCEEEEEEEeCCCChHHHHHHHHHHHHHHh
Confidence            35678999999999999999999997643211                 1245789998877777777889999999999


Q ss_pred             CCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhh---------hcCCCCCHHHHHHHHHHHHHHH
Q 024842          102 FSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQ---------TKKEFFSTSDVLQIFYQICAGL  172 (262)
Q Consensus       102 l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~---------~~~~~~~~~~~~~i~~ql~~~l  172 (262)
                      ++||||+++++++          ...+..+++|||+.+|+|.+++....         .....+++..++.++.|++.||
T Consensus        72 l~HpnIV~l~g~~----------~~~~~~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl  141 (299)
T 4asz_A           72 LQHEHIVKFYGVC----------VEGDPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGM  141 (299)
T ss_dssp             CCCTTBCCEEEEE----------CSSSSEEEEEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCccEEEEE----------eeCCEEEEEEEcCCCCcHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHH
Confidence            9999999999998          34667999999999999999986432         1235699999999999999999


Q ss_pred             HHHHcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-------ccCcccCCcccchhhhhhhhhhhhhc
Q 024842          173 KHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-------ALGQRRYSCRNGLLSIVLHLSELLSC  245 (262)
Q Consensus       173 ~~lH~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-------~~~~~~~~~~~d~~s~g~~~~e~~~~  245 (262)
                      .|||+++  |+||||||+|||++.++    .+||+|||+|+...+..       ..+++.|++||.+..-.+     ...
T Consensus       142 ~yLH~~~--iiHRDlKp~NILl~~~~----~~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~-----~~k  210 (299)
T 4asz_A          142 VYLASQH--FVHRDLATRNCLVGENL----LVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKF-----TTE  210 (299)
T ss_dssp             HHHHHTT--CCCSCCSGGGEEECGGG----CEEECCCSCHHHHTGGGCEEETTTEEECGGGCCHHHHHHCCC-----CHH
T ss_pred             HHHHhCC--cccCccCHhhEEECCCC----cEEECCcccceecCCCCceeecCceecChhhcCHHHHcCCCC-----Cch
Confidence            9999988  99999999999998877    69999999998654322       236667777774432211     122


Q ss_pred             Ccccchheeheeccc
Q 024842          246 GTVRVIQILMRELMF  260 (262)
Q Consensus       246 ~~v~~~g~~~~~l~~  260 (262)
                      .||||+|+++|||+|
T Consensus       211 ~DVwS~Gvvl~Ellt  225 (299)
T 4asz_A          211 SDVWSLGVVLWEIFT  225 (299)
T ss_dssp             HHHHHHHHHHHHHHT
T ss_pred             hhHHHHHHHHHHHHc
Confidence            455555555555555

>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*

Probab=100.00  E-value=1.4e-44  Score=294.46  Aligned_cols=196  Identities=23%  Similarity=0.322  Sum_probs=153.0

Q ss_pred             ecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc--hHHHHHHHHHHHHhh
Q 024842           23 INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN--NEQLEMVREEIRVSS  100 (262)
Q Consensus        23 ~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~--~~~~~~~~~E~~~l~  100 (262)
                      ++.++|++.+.||+|+||.||+|++..+..                   .++.||+|.+....  ......+.+|+.+++
T Consensus        21 ~~p~~Y~i~~~lG~G~fg~Vy~a~~~~~~~-------------------~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~   81 (304)
T 3ubd_A           21 ADPSQFELLKVLGQGSFGKVFLVKKISGSD-------------------ARQLYAMKVLKKATLKVRDRVRTKMERDILV   81 (304)
T ss_dssp             CCGGGEEEEEEEECGGGCEEEEEEECSSTT-------------------TTCEEEEEEEESEEEEEEECC------CCCC
T ss_pred             CCccccEEEEEEecCCCeEEEEEEEccCCC-------------------CCEEEEEEEEehHHcChHHHHHHHHHHHHHH
Confidence            345789999999999999999999754322                   23467888765331  112245778999999


Q ss_pred             hCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCC
Q 024842          101 LFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEP  180 (262)
Q Consensus       101 ~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~  180 (262)
                      .++||||+++++++          ...+..|++|||+.+|+|.+++.    ....+++..++.++.|++.||+|||+++ 
T Consensus        82 ~l~HpnIv~l~~~~----------~~~~~~~ivmEy~~gg~L~~~l~----~~~~l~e~~~~~~~~qi~~aL~ylH~~~-  146 (304)
T 3ubd_A           82 EVNHPFIVKLHYAF----------QTEGKLYLILDFLRGGDLFTRLS----KEVMFTEEDVKFYLAELALALDHLHSLG-  146 (304)
T ss_dssp             CCCCTTEECEEEEE----------EETTEEEEEECCCTTCEEHHHHH----HHCCCCHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred             HCCCCCCCeEEEEE----------EECCEEEEEEEcCCCCCHHHHHH----hcCCCCHHHHHHHHHHHHHHHHHHHHCC-
Confidence            99999999999998          44678999999999999999987    4456999999999999999999999999 


Q ss_pred             CeeecCCCCCcEEEecCCCCCCceEEeeccceeecccc-----CccCcccCCcccchhhhhhhhhhhhhcCcccchheeh
Q 024842          181 PYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSK-----FALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILM  255 (262)
Q Consensus       181 ~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~-----~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~  255 (262)
                       |+||||||+|||++.++    .+||+|||+|+.....     ...|++.|++||-+..-++.     ...|+||+|+++
T Consensus       147 -IiHRDlKp~NILl~~~g----~vKl~DFGla~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~-----~~~DiwSlGvil  216 (304)
T 3ubd_A          147 -IIYRDLKPENILLDEEG----HIKLTDFGLSKESIDHEKKAYSFCGTVEYMAPEVVNRRGHT-----QSADWWSFGVLM  216 (304)
T ss_dssp             -CCCSSCCGGGEEECTTS----CEEEESSEEEEC-----CCCCSCCCCGGGCCHHHHHTSCCC-----THHHHHHHHHHH
T ss_pred             -CcCCCCCHHHeEEcCCC----CEEecccccceeccCCCccccccccCcccCCHHHhccCCCC-----CCCcccchHHHH
Confidence             99999999999998877    6999999999865322     24689999999976443332     236899999999


Q ss_pred             eecccCC
Q 024842          256 RELMFGR  262 (262)
Q Consensus       256 ~~l~~G~  262 (262)
                      |||++|+
T Consensus       217 yemltG~  223 (304)
T 3ubd_A          217 FEMLTGT  223 (304)
T ss_dssp             HHHHHSS
T ss_pred             HHHHhCC
Confidence            9998885

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=100.00  E-value=1.6e-43  Score=288.87  Aligned_cols=195  Identities=22%  Similarity=0.235  Sum_probs=154.4

Q ss_pred             eeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc--chHHHHHHHHHHHH
Q 024842           21 VWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ--NNEQLEMVREEIRV   98 (262)
Q Consensus        21 ~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~--~~~~~~~~~~E~~~   98 (262)
                      ..++.+++++.++||+|+||.||+|++..                         .+|+|.++..  .....+.+.+|+.+
T Consensus        31 Wei~~~~l~l~~~iG~G~fG~Vy~~~~~~-------------------------~vAvK~~~~~~~~~~~~~~f~~E~~i   85 (307)
T 3omv_A           31 WEIEASEVMLSTRIGSGSFGTVYKGKWHG-------------------------DVAVKILKVVDPTPEQFQAFRNEVAV   85 (307)
T ss_dssp             CBCCTTSCCEEEECCCCSSSEEEEEESSS-------------------------EEEEEECCCSSCCHHHHHHHHHHHHH
T ss_pred             cEEcHHHeEEeeEEeeCCCcEEEEEEECC-------------------------cEEEEEEEecCCCHHHHHHHHHHHHH
Confidence            44778899999999999999999998642                         3566665432  34556789999999


Q ss_pred             hhhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcC
Q 024842           99 SSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSL  178 (262)
Q Consensus        99 l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~  178 (262)
                      ++.++||||+++++++.           .+..++||||+.+|+|.+++..   ....+++..+..++.|++.||+|||++
T Consensus        86 l~~l~HpNIV~l~g~~~-----------~~~~~iVmEy~~gGsL~~~l~~---~~~~l~~~~~~~i~~qia~gL~yLH~~  151 (307)
T 3omv_A           86 LRKTRHVNILLFMGYMT-----------KDNLAIVTQWCEGSSLYKHLHV---QETKFQMFQLIDIARQTAQGMDYLHAK  151 (307)
T ss_dssp             HTTCCCTTBCCEEEEEC-----------SSSCEEEEECCSSCBHHHHHHT---SCCCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHhCCCCCEeeEEEEEE-----------CCeEEEEEEcCCCCCHHHHHhh---cCCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            99999999999999752           3458999999999999998852   345699999999999999999999998


Q ss_pred             CCCeeecCCCCCcEEEecCCCCCCceEEeeccceeecccc-------CccCcccCCcccchhhhhhhhhhhhhcCcccch
Q 024842          179 EPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSK-------FALGQRRYSCRNGLLSIVLHLSELLSCGTVRVI  251 (262)
Q Consensus       179 ~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~-------~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~  251 (262)
                      +  |+||||||+|||++.++    .+||+|||+|+.....       ...|++.|++||.+......  .+....||||+
T Consensus       152 ~--IiHRDlKp~NILl~~~~----~~Ki~DFGla~~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~--~y~~ksDVwS~  223 (307)
T 3omv_A          152 N--IIHRDMKSNNIFLHEGL----TVKIGDFGLATVKSRWSGSQQVEQPTGSVLWMAPEVIRMQDNN--PFSFQSDVYSY  223 (307)
T ss_dssp             T--CBCSCCCSSSEEEETTE----EEEECCCSSCBC------------CCCCTTSCCHHHHHCCSSC--CCCHHHHHHHH
T ss_pred             C--ccCCccCHHHEEECCCC----cEEEeeccCceecccCCcceeecccccCCCccCHHHhhccCCC--CCCcHHHhHhH
Confidence            8  99999999999998776    7999999999865421       23578889888865321100  01224688888


Q ss_pred             heeheecccCC
Q 024842          252 QILMRELMFGR  262 (262)
Q Consensus       252 g~~~~~l~~G~  262 (262)
                      |+++|||+||+
T Consensus       224 Gvvl~Elltg~  234 (307)
T 3omv_A          224 GIVLYELMTGE  234 (307)
T ss_dssp             HHHHHHHHHSS
T ss_pred             HHHHHHHHHCC
Confidence            88888888885

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=100.00  E-value=1.8e-43  Score=291.30  Aligned_cols=187  Identities=21%  Similarity=0.218  Sum_probs=153.2

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCCC
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSH  104 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~h  104 (262)
                      .+.|++.++||+|+||.||+|++..+++                      .||+|++.....     ..+|+.+++.++|
T Consensus        57 ~~~~~~~~~lG~G~fG~Vy~a~~~~~g~----------------------~vAiK~i~~~~~-----~~~E~~il~~l~H  109 (336)
T 4g3f_A           57 VHWMTHQPRVGRGSFGEVHRMKDKQTGF----------------------QCAVKKVRLEVF-----RVEELVACAGLSS  109 (336)
T ss_dssp             TTEEEEEEEEEEETTEEEEEEEETTTCC----------------------EEEEEEEETTTC-----CTHHHHTTTTCCC
T ss_pred             hhheEeCcEeccCCCeEEEEEEECCCCC----------------------EEEEEEECHHHh-----HHHHHHHHHhCCC
Confidence            4679999999999999999999988766                      567776643321     2369999999999


Q ss_pred             CCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeee
Q 024842          105 RNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAH  184 (262)
Q Consensus       105 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH  184 (262)
                      |||+++++++          ......|++|||+.+|+|.+++.    ...++++..++.++.|++.||+|||+++  |+|
T Consensus       110 pnIV~l~~~~----------~~~~~~~ivmEy~~gg~L~~~l~----~~~~l~e~~~~~~~~qi~~aL~ylH~~~--IiH  173 (336)
T 4g3f_A          110 PRIVPLYGAV----------REGPWVNIFMELLEGGSLGQLIK----QMGCLPEDRALYYLGQALEGLEYLHTRR--ILH  173 (336)
T ss_dssp             TTBCCEEEEE----------EETTEEEEEECCCTTCBHHHHHH----HHSSCCHHHHHHHHHHHHHHHHHHHTTT--EEC
T ss_pred             CCCCcEEEEE----------EECCEEEEEEeccCCCcHHHHHH----HcCCCCHHHHHHHHHHHHHHHHHHHHCC--cee
Confidence            9999999988          34678999999999999999987    4456999999999999999999999999  999


Q ss_pred             cCCCCCcEEEecCCCCCCceEEeeccceeecccc----------CccCcccCCcccchhhhhhhhhhhhhcCcccchhee
Q 024842          185 NDVKPGNILITCRKGQPPLAILMDFGSARPAQSK----------FALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQIL  254 (262)
Q Consensus       185 ~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~----------~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~  254 (262)
                      |||||+|||++.++.   .+||+|||+|+.....          ...||+.|++||-+..-++.     ...||||+|++
T Consensus       174 RDlKp~NILl~~~g~---~vKl~DFGla~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~-----~~~DiwSlGvi  245 (336)
T 4g3f_A          174 GDVKADNVLLSSDGS---RAALCDFGHALCLQPDGLGKSLLTGDYIPGTETHMAPEVVMGKPCD-----AKVDIWSSCCM  245 (336)
T ss_dssp             SCCCGGGEEECTTSC---CEEECCCTTCEEC------------CCCCCCGGGCCHHHHTTCCCC-----THHHHHHHHHH
T ss_pred             cccCHHHEEEeCCCC---EEEEeeCCCCeEccCCCcccceecCCccccCccccCHHHHCCCCCC-----cHHHHHHHHHH
Confidence            999999999987653   4999999999876432          13588999999876543322     23588888888


Q ss_pred             heecccCC
Q 024842          255 MRELMFGR  262 (262)
Q Consensus       255 ~~~l~~G~  262 (262)
                      +|||++|+
T Consensus       246 lyemltG~  253 (336)
T 4g3f_A          246 MLHMLNGC  253 (336)
T ss_dssp             HHHHHHSS
T ss_pred             HHHHHHCc
Confidence            88888885

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=100.00  E-value=1.7e-42  Score=286.14  Aligned_cols=201  Identities=17%  Similarity=0.235  Sum_probs=151.7

Q ss_pred             eecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhh
Q 024842           22 WINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSL  101 (262)
Q Consensus        22 ~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~  101 (262)
                      .+..+++.+.++||+|+||.||+|++.....                 ..++..||+|++........+.|.+|+.+++.
T Consensus        37 ~i~~~d~~l~~~LG~G~fG~Vy~a~~~~~~~-----------------~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~   99 (329)
T 4aoj_A           37 HIKRRDIVLKWELGEGAFGKVFLAECHNLLP-----------------EQDKMLVAVKALKEASESARQDFQREAELLTM   99 (329)
T ss_dssp             BCCGGGEEEEEEEEECSSEEEEEEEESSSCC--------------------CEEEEEEEESCCSHHHHHHHHHHHHHHTT
T ss_pred             ccCHHHeEEEEEEccCCCcEEEEEEECCccc-----------------CCCCeEEEEEEECcCCHHHHHHHHHHHHHHHh
Confidence            3556789999999999999999999764211                 01345789999887777777889999999999


Q ss_pred             CCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhh-----------cCCCCCHHHHHHHHHHHHH
Q 024842          102 FSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQT-----------KKEFFSTSDVLQIFYQICA  170 (262)
Q Consensus       102 l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~-----------~~~~~~~~~~~~i~~ql~~  170 (262)
                      ++||||+++++++          ......+++|||+.+|+|.+++.....           ...++++.+++.++.|++.
T Consensus       100 l~HpnIV~l~g~~----------~~~~~~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~  169 (329)
T 4aoj_A          100 LQHQHIVRFFGVC----------TEGRPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAA  169 (329)
T ss_dssp             CCCTTBCCEEEEE----------CSSSSEEEEEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHH
T ss_pred             CCCCCCCcEEEEE----------EECCEEEEEEEcCCCCcHHHHHHhcCcccccccccccccCCCCCHHHHHHHHHHHHH
Confidence            9999999999998          346679999999999999999864321           2346999999999999999


Q ss_pred             HHHHHHcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeecccc-------CccCcccCCcccchhhhhhhhhhhh
Q 024842          171 GLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSK-------FALGQRRYSCRNGLLSIVLHLSELL  243 (262)
Q Consensus       171 ~l~~lH~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~-------~~~~~~~~~~~~d~~s~g~~~~e~~  243 (262)
                      ||.|||+++  |+||||||+|||++.+.    .+||+|||+|+.....       ...+++.|++||.+..-.+     .
T Consensus       170 gl~yLH~~~--iiHRDLKp~NILl~~~~----~~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~-----~  238 (329)
T 4aoj_A          170 GMVYLAGLH--FVHRDLATRNCLVGQGL----VVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKF-----T  238 (329)
T ss_dssp             HHHHHHHTT--CCCSCCCGGGEEEETTT----EEEECCCC----------------CCCCGGGCCHHHHTTCCC-----C
T ss_pred             HHHHHhcCC--eecccccHhhEEECCCC----cEEEcccccceeccCCCcceecCcccccccccChhhhcCCCC-----C
Confidence            999999988  99999999999998776    7999999999865332       1346677888874432211     1


Q ss_pred             hcCcccchheeheeccc
Q 024842          244 SCGTVRVIQILMRELMF  260 (262)
Q Consensus       244 ~~~~v~~~g~~~~~l~~  260 (262)
                      ...||||+|+++|||+|
T Consensus       239 ~~sDvwS~Gvvl~Ellt  255 (329)
T 4aoj_A          239 TESDVWSFGVVLWEIFT  255 (329)
T ss_dssp             HHHHHHHHHHHHHHHHT
T ss_pred             ccccccchHHHHHHHHc
Confidence            23466666666666665

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*

Probab=100.00  E-value=5.8e-42  Score=279.69  Aligned_cols=201  Identities=23%  Similarity=0.322  Sum_probs=146.5

Q ss_pred             CceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc-hHHHHHHHHHHHHhhhCCC
Q 024842           26 NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN-NEQLEMVREEIRVSSLFSH  104 (262)
Q Consensus        26 ~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~-~~~~~~~~~E~~~l~~l~h  104 (262)
                      ++|++.+.||+|+||.||+|++..+++                      .||+|++.... ....+.+.+|+.+++.++|
T Consensus         5 ~dy~~~~~lG~G~fg~V~~a~~~~~~~----------------------~vAiK~i~~~~~~~~~~~~~~E~~il~~l~H   62 (299)
T 4g31_A            5 TDFEPIQCLGRGGFGVVFEAKNKVDDC----------------------NYAIKRIRLPNRELAREKVMREVKALAKLEH   62 (299)
T ss_dssp             HHEEEEEEEEECC--EEEEEEETTTCC----------------------EEEEEEEEECSSHHHHHHHHHHHHHHTTCCC
T ss_pred             hhCEEeeEEecCCCeEEEEEEECCCCC----------------------EEEEEEEeccCCHHHHHHHHHHHHHHHhCCC
Confidence            469999999999999999999987655                      67888776543 3345678999999999999


Q ss_pred             CCccchhhhhHHHhh--hccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCe
Q 024842          105 RNLLPLLDHAIIAVK--ANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPY  182 (262)
Q Consensus       105 ~~i~~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~i  182 (262)
                      |||++++++|.....  ...........|++|||+.+|+|.+++..... ....++..++.++.|++.||+|||+++  |
T Consensus        63 pnIV~~~~~~~~~~~~~~~~~~~~~~~l~ivmE~~~gg~L~~~l~~~~~-~~~~~~~~~~~i~~qi~~al~ylH~~~--I  139 (299)
T 4g31_A           63 PGIVRYFNAWLEKNTTEKLQPSSPKVYLYIQMQLCRKENLKDWMNGRCT-IEERERSVCLHIFLQIAEAVEFLHSKG--L  139 (299)
T ss_dssp             TTBCCEEEEEEEEC----------CEEEEEEEECCCSCCHHHHHHTCCS-GGGSCHHHHHHHHHHHHHHHHHHHHTT--C
T ss_pred             CCCCeEEEEEEecCccccccccCCCcEEEEEEecCCCCcHHHHHHhcCC-CChhHHHHHHHHHHHHHHHHHHHHHCc--C
Confidence            999999998742100  00011223457999999999999999863221 123566778999999999999999999  9


Q ss_pred             eecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-----------------ccCcccCCcccchhhhhhhhhhhhhc
Q 024842          183 AHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-----------------ALGQRRYSCRNGLLSIVLHLSELLSC  245 (262)
Q Consensus       183 vH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-----------------~~~~~~~~~~~d~~s~g~~~~e~~~~  245 (262)
                      +||||||+|||++.++    .+||+|||+|+......                 ..||+.|++||.+..-.+.     ..
T Consensus       140 iHRDlKp~NILl~~~~----~vKl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~-----~~  210 (299)
T 4g31_A          140 MHRDLKPSNIFFTMDD----VVKVGDFGLVTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSPEQIHGNSYS-----HK  210 (299)
T ss_dssp             CCCCCCGGGEEECTTC----CEEECCCCCC--------------------------CCCTTSCHHHHTTCCCC-----TH
T ss_pred             ccccCcHHHeEECCCC----cEEEccCccceecCCCccccccccccccccccCCcccCccccCHHHHcCCCCC-----CH
Confidence            9999999999998877    69999999998765322                 2488889999865433221     23


Q ss_pred             Ccccchheeheeccc
Q 024842          246 GTVRVIQILMRELMF  260 (262)
Q Consensus       246 ~~v~~~g~~~~~l~~  260 (262)
                      .||||+|+++|||++
T Consensus       211 ~DiwSlGvilyell~  225 (299)
T 4g31_A          211 VDIFSLGLILFELLY  225 (299)
T ss_dssp             HHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHcc
Confidence            578888888887765

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=100.00  E-value=1.8e-41  Score=282.29  Aligned_cols=202  Identities=18%  Similarity=0.251  Sum_probs=154.2

Q ss_pred             eecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc-hHHHHHHHHHHHHhh
Q 024842           22 WINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN-NEQLEMVREEIRVSS  100 (262)
Q Consensus        22 ~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~-~~~~~~~~~E~~~l~  100 (262)
                      .++.++|++.+.||+|+||.||+|++..+++..+.                 +.||+|++.... ....+.+.+|+.+++
T Consensus        60 Ei~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~-----------------k~VAvK~l~~~~~~~~~~~~~~E~~il~  122 (353)
T 4ase_A           60 EFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATC-----------------RTVAVKMLKEGATHSEHRALMSELKILI  122 (353)
T ss_dssp             BCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCE-----------------EEEEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred             EecHHHeEEeeEEecCCCeEEEEEEEcCCCcccCC-----------------eEEEEEEEccccChHHHHHHHHHHHHHH
Confidence            36678999999999999999999998876554332                 378999876543 344577999999999


Q ss_pred             hCCC-CCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhc------------CCCCCHHHHHHHHHH
Q 024842          101 LFSH-RNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTK------------KEFFSTSDVLQIFYQ  167 (262)
Q Consensus       101 ~l~h-~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~------------~~~~~~~~~~~i~~q  167 (262)
                      .++| |||+++++++.         ......+++|||+.+|+|.+++......            ...+++..+..++.|
T Consensus       123 ~l~hhpnIV~l~g~~~---------~~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~q  193 (353)
T 4ase_A          123 HIGHHLNVVNLLGACT---------KPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQ  193 (353)
T ss_dssp             HHCCCTTBCCEEEEEC---------CTTSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHH
T ss_pred             HcCCCCcEEEEEEEEE---------ecCCEEEEEEEcCCCCCHHHHHHhcccccccccccchhhccccCCHHHHHHHHHH
Confidence            9976 89999999873         2345689999999999999998754321            345899999999999


Q ss_pred             HHHHHHHHHcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-------ccCcccCCcccchhhhhhhhh
Q 024842          168 ICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-------ALGQRRYSCRNGLLSIVLHLS  240 (262)
Q Consensus       168 l~~~l~~lH~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-------~~~~~~~~~~~d~~s~g~~~~  240 (262)
                      ++.||+|||+++  |+||||||+|||++.++    .+||+|||+|+......       ..+++.|++||-+..-.+   
T Consensus       194 ia~gl~yLH~~~--iiHRDLK~~NILl~~~~----~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~y---  264 (353)
T 4ase_A          194 VAKGMEFLASRK--CIHRDLAARNILLSEKN----VVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVY---  264 (353)
T ss_dssp             HHHHHHHHHHTT--CCCSCCSGGGEEECGGG----CEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCC---
T ss_pred             HHHHHHhHhhCC--eecCccCccceeeCCCC----CEEECcchhhhhcccCCCceeeccccccccccCHHHHhcCCC---
Confidence            999999999998  99999999999998877    69999999998654322       235667777774322111   


Q ss_pred             hhhhcCcccchheeheeccc
Q 024842          241 ELLSCGTVRVIQILMRELMF  260 (262)
Q Consensus       241 e~~~~~~v~~~g~~~~~l~~  260 (262)
                        ....||||+|+++|||+|
T Consensus       265 --~~ksDVwS~Gv~l~El~t  282 (353)
T 4ase_A          265 --TIQSDVWSFGVLLWEIFS  282 (353)
T ss_dssp             --CHHHHHHHHHHHHHHHTT
T ss_pred             --CCcccEeehHHHHHHHHh
Confidence              112355555555555544

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=100.00  E-value=5e-41  Score=274.98  Aligned_cols=200  Identities=19%  Similarity=0.222  Sum_probs=150.4

Q ss_pred             ecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc-hHHHHHHHHHHHHhhh
Q 024842           23 INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN-NEQLEMVREEIRVSSL  101 (262)
Q Consensus        23 ~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~-~~~~~~~~~E~~~l~~  101 (262)
                      +...++++.++||+|+||.||+|++.....                 ...+..||+|++.... ....+.|.+|+.+++.
T Consensus        23 i~~~~~~~~~~lG~G~fG~Vykg~~~~~~~-----------------~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~   85 (308)
T 4gt4_A           23 ISLSAVRFMEELGEDRFGKVYKGHLFGPAP-----------------GEQTQAVAIKTLKDKAEGPLREEFRHEAMLRAR   85 (308)
T ss_dssp             CCGGGEEEEEEEEECSSCEEEEEEEC------------------------CEEEEEEECCC-CCC-CHHHHHHHHHHHHH
T ss_pred             CCHHHCeEeeEeccCCCcEEEEEEEcCCcc-----------------CCCCeEEEEEEECcccChHHHHHHHHHHHHHHh
Confidence            556789999999999999999999753211                 0123478888876542 3335779999999999


Q ss_pred             CCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhh------------hcCCCCCHHHHHHHHHHHH
Q 024842          102 FSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQ------------TKKEFFSTSDVLQIFYQIC  169 (262)
Q Consensus       102 l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~------------~~~~~~~~~~~~~i~~ql~  169 (262)
                      ++||||+++++++          ......++||||+.+|+|.+++....            .....+++..+..++.|++
T Consensus        86 l~HpNIV~l~g~~----------~~~~~~~lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia  155 (308)
T 4gt4_A           86 LQHPNVVCLLGVV----------TKDQPLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIA  155 (308)
T ss_dssp             CCCTTBCCEEEEE----------CSSSSCEEEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHH
T ss_pred             CCCCCCCCcceEE----------EECCEEEEEEEcCCCCcHHHHHHhhCccccccccccccccccCCCHHHHHHHHHHHH
Confidence            9999999999998          34567899999999999999986432            1134689999999999999


Q ss_pred             HHHHHHHcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-------ccCcccCCcccchhhhhhhhhhh
Q 024842          170 AGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-------ALGQRRYSCRNGLLSIVLHLSEL  242 (262)
Q Consensus       170 ~~l~~lH~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-------~~~~~~~~~~~d~~s~g~~~~e~  242 (262)
                      .||+|||+++  |+||||||+|||++.++    .+||+|||+|+......       ..+++.|++||.+..-.     +
T Consensus       156 ~gl~yLH~~~--iiHRDLK~~NILl~~~~----~~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~-----~  224 (308)
T 4gt4_A          156 AGMEYLSSHH--VVHKDLATRNVLVYDKL----NVKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGK-----F  224 (308)
T ss_dssp             HHHHHHHHTT--CCCSCCSGGGEEECGGG----CEEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHHHHCC-----C
T ss_pred             HHHHHHHhCC--CCCCCccccceEECCCC----CEEECCcccceeccCCCceeEecccccCCcccCHHHHhCCC-----C
Confidence            9999999998  99999999999998877    69999999998654321       34667788887442211     1


Q ss_pred             hhcCcccchheeheeccc
Q 024842          243 LSCGTVRVIQILMRELMF  260 (262)
Q Consensus       243 ~~~~~v~~~g~~~~~l~~  260 (262)
                      ....||||+|+++|||+|
T Consensus       225 s~ksDVwSfGvvl~El~t  242 (308)
T 4gt4_A          225 SIDSDIWSYGVVLWEVFS  242 (308)
T ss_dssp             CHHHHHHHHHHHHHHHHT
T ss_pred             CccchhhhHHHHHHHHHh
Confidence            123455566665555554

>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}

Probab=100.00  E-value=7.8e-41  Score=282.83  Aligned_cols=197  Identities=21%  Similarity=0.300  Sum_probs=155.4

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc--chHHHHHHHHHHHHhhhC
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ--NNEQLEMVREEIRVSSLF  102 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~--~~~~~~~~~~E~~~l~~l  102 (262)
                      +++|++++.||+|+||.||+|++..+++                      .||+|++...  .....+.+.+|+.+++.+
T Consensus        53 ~~~Y~~~~~lG~G~fG~V~~a~~~~t~~----------------------~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l  110 (398)
T 4b99_A           53 GDEYEIIETIGNGAYGVVSSARRRLTGQ----------------------QVAIKKIPNAFDVVTNAKRTLRELKILKHF  110 (398)
T ss_dssp             CSSEEEEEEEEECSSCEEEEEEETTTCC----------------------EEEEEEETTTTSSHHHHHHHHHHHHHHHHC
T ss_pred             CCCeEEEEEEecccCeEEEEEEECCCCC----------------------EEEEEEECccccchHHHHHHHHHHHHHHhc
Confidence            4689999999999999999999988766                      6777776543  334456788999999999


Q ss_pred             CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCe
Q 024842          103 SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPY  182 (262)
Q Consensus       103 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~i  182 (262)
                      +||||+++++++...    .........|++|||+. |+|.+++.    ...++++..++.++.||+.||.|||+++  |
T Consensus       111 ~HpnIv~l~~~~~~~----~~~~~~~~~~ivmE~~~-g~L~~~i~----~~~~l~~~~~~~~~~qil~al~ylH~~~--i  179 (398)
T 4b99_A          111 KHDNIIAIKDILRPT----VPYGEFKSVYVVLDLME-SDLHQIIH----SSQPLTLEHVRYFLYQLLRGLKYMHSAQ--V  179 (398)
T ss_dssp             CCTTBCCEEEECCCS----SCTTTCCCEEEEEECCS-EEHHHHHT----SSSCCCHHHHHHHHHHHHHHHHHHHHTT--C
T ss_pred             CCCCcceEeeeeecc----cccccCCEEEEEEeCCC-CCHHHHHH----hcCCCCHHHHHHHHHHHHHHHHHHHHCc--C
Confidence            999999999876310    01123467899999995 78988876    5667999999999999999999999999  9


Q ss_pred             eecCCCCCcEEEecCCCCCCceEEeeccceeecccc---------CccCcccCCcccchhhhhhhhhhhhhcCcccchhe
Q 024842          183 AHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSK---------FALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQI  253 (262)
Q Consensus       183 vH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~---------~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~  253 (262)
                      +||||||+|||++.++    .+||+|||+|+.....         ...|++.|.+||-+.....    .....||||+|+
T Consensus       180 iHRDlKP~NIl~~~~~----~~Ki~DFGla~~~~~~~~~~~~~~~~~~GT~~Y~APEv~~~~~~----~~~~~DiWSlG~  251 (398)
T 4b99_A          180 IHRDLKPSNLLVNENC----ELKIGDFGMARGLCTSPAEHQYFMTEYVATRWYRAPELMLSLHE----YTQAIDLWSVGC  251 (398)
T ss_dssp             BCCCCCGGGEEECTTC----CEEECCCTTCBCC-------CCCCCSSCCCCTTCCHHHHTTCSC----CCTHHHHHHHHH
T ss_pred             cCCCcCccccccCCCC----CEEEeecceeeecccCccccccccccceeChHhcCHHHhcCCCC----CCChhheehhHH
Confidence            9999999999998777    6999999999865321         2368888888886543321    112257888888


Q ss_pred             eheecccCC
Q 024842          254 LMRELMFGR  262 (262)
Q Consensus       254 ~~~~l~~G~  262 (262)
                      ++|||++|+
T Consensus       252 il~ell~G~  260 (398)
T 4b99_A          252 IFGEMLARR  260 (398)
T ss_dssp             HHHHHHHTS
T ss_pred             HHHHHHHCC
Confidence            888888875

>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*

Probab=100.00  E-value=1e-40  Score=273.30  Aligned_cols=197  Identities=20%  Similarity=0.282  Sum_probs=149.8

Q ss_pred             CceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCCCC
Q 024842           26 NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSHR  105 (262)
Q Consensus        26 ~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~h~  105 (262)
                      ++|.+.+.||+|+||.||+|++.  +                      ..||+|++...... ....+.|+..+..++||
T Consensus         3 r~i~L~~~iG~G~fG~Vy~~~~~--g----------------------~~VAvK~l~~~~~~-~~~~e~Ei~~~~~l~Hp   57 (303)
T 3hmm_A            3 RTIVLQESIGKGRFGEVWRGKWR--G----------------------EEVAVKIFSSREER-SWFREAEIYQTVMLRHE   57 (303)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEET--T----------------------EEEEEEEECGGGHH-HHHHHHHHHTSTTCCCT
T ss_pred             cEEEEEEEEeeCCCeEEEEEEEC--C----------------------EEEEEEEECccchh-hHHHHHHHHHHhcCCCC
Confidence            57999999999999999999874  2                      36888877544332 23345577777889999


Q ss_pred             CccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcC------C
Q 024842          106 NLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSL------E  179 (262)
Q Consensus       106 ~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~------~  179 (262)
                      ||+++++++..      .+......|+||||+.+|+|.+++.     ...++++.+..++.|++.||+|||++      .
T Consensus        58 NIv~l~g~~~~------~~~~~~~~~lV~Ey~~~gsL~~~l~-----~~~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~  126 (303)
T 3hmm_A           58 NILGFIAADNK------DNGTWTQLWLVSDYHEHGSLFDYLN-----RYTVTVEGMIKLALSTASGLAHLHMEIVGTQGK  126 (303)
T ss_dssp             TBCCEEEEEEE------ECSSSEEEEEEEECCTTCBHHHHHH-----HCCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCB
T ss_pred             CCCcEEEEEEe------cCCCceEEEEEecCCCCCcHHHHHH-----hCCCCHHHHHHHHHHHHHHHHHHHHhhhhccCC
Confidence            99999998742      1122346899999999999999985     23589999999999999999999986      1


Q ss_pred             CCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC---------ccCcccCCcccchhhhh-hhhhhhhhcCccc
Q 024842          180 PPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF---------ALGQRRYSCRNGLLSIV-LHLSELLSCGTVR  249 (262)
Q Consensus       180 ~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~---------~~~~~~~~~~~d~~s~g-~~~~e~~~~~~v~  249 (262)
                      ++|+||||||+|||++.++    .+||+|||+|+......         ..+++.|++||-+..-. ..........|||
T Consensus       127 ~~IiHRDlKp~NILl~~~~----~~Ki~DFGla~~~~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVw  202 (303)
T 3hmm_A          127 PAIAHRDLKSKNILVKKNG----TCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIY  202 (303)
T ss_dssp             CCEECSCCCGGGEEECTTS----CEEECCCTTCEEEETTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHH
T ss_pred             CCEeeccCCcccEEECCCC----CEEEEeCCCCccccCCCCceeeecccccccccccCHHHhcccccccCCccChhHhhh
Confidence            2499999999999998877    69999999998765332         25788899998663321 1111233356888


Q ss_pred             chheeheecccCC
Q 024842          250 VIQILMRELMFGR  262 (262)
Q Consensus       250 ~~g~~~~~l~~G~  262 (262)
                      |+|+++|||+||+
T Consensus       203 S~Gvvl~El~tg~  215 (303)
T 3hmm_A          203 AMGLVFWEIARRC  215 (303)
T ss_dssp             HHHHHHHHHHHTB
T ss_pred             hHHHHHHHHHHCC
Confidence            8888888888873

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=100.00  E-value=7.7e-40  Score=288.97  Aligned_cols=192  Identities=22%  Similarity=0.257  Sum_probs=155.7

Q ss_pred             cCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc------chHHHHHHHHHHH
Q 024842           24 NENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ------NNEQLEMVREEIR   97 (262)
Q Consensus        24 ~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~------~~~~~~~~~~E~~   97 (262)
                      ..++|++.+.||+|+||.||+|++..+++                      .||+|++...      ..........++.
T Consensus       187 slddf~i~k~LG~G~fG~V~la~~~~tg~----------------------~~AiK~i~K~~i~~~~~~~~~~~E~~~l~  244 (689)
T 3v5w_A          187 TMNDFSVHRIIGRGGFGEVYGCRKADTGK----------------------MYAMKCLDKKRIKMKQGETLALNERIMLS  244 (689)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEETTTCC----------------------EEEEEEEEHHHHHHTTCHHHHHHHHHHHH
T ss_pred             chHHeEEEEEEecccCeEEEEEEECCCCC----------------------EEEEEEEeHHHcchhhhHHHHHHHHHHHH
Confidence            35789999999999999999999988766                      5666655322      1222233344566


Q ss_pred             HhhhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHc
Q 024842           98 VSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHS  177 (262)
Q Consensus        98 ~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~  177 (262)
                      +++.++||||++++.+|          .+...+|+||||+.+|+|.+++.    ....+++..++.++.||+.||+|||+
T Consensus       245 ll~~~~HP~IV~l~~~f----------~~~~~lylVmEy~~GGdL~~~l~----~~~~l~E~~a~~y~~qIl~aL~yLH~  310 (689)
T 3v5w_A          245 LVSTGDCPFIVCMSYAF----------HTPDKLSFILDLMNGGDLHYHLS----QHGVFSEADMRFYAAEIILGLEHMHN  310 (689)
T ss_dssp             HHSSSCCTTBCCEEEEE----------ECSSEEEEEECCCCSCBHHHHHH----HHCCCCHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHhhCCCCCEeEEEEEE----------EECCEEEEEEecCCCCcHHHHHH----hcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            77888999999999998          44778999999999999999986    44569999999999999999999999


Q ss_pred             CCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC---ccCcccCCcccchhh-hhhhhhhhhhcCcccchhe
Q 024842          178 LEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF---ALGQRRYSCRNGLLS-IVLHLSELLSCGTVRVIQI  253 (262)
Q Consensus       178 ~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~---~~~~~~~~~~~d~~s-~g~~~~e~~~~~~v~~~g~  253 (262)
                      ++  |+||||||+|||++.++    .+||+|||+|.......   ..|++.|++||-+.. .++.     ...|+||+|+
T Consensus       311 ~g--IiHRDLKPeNILld~~G----~vKL~DFGlA~~~~~~~~~t~~GTp~YmAPEvl~~~~~y~-----~~vDiWSLGv  379 (689)
T 3v5w_A          311 RF--VVYRDLKPANILLDEHG----HVRISDLGLACDFSKKKPHASVGTHGYMAPEVLQKGVAYD-----SSADWFSLGC  379 (689)
T ss_dssp             TT--EECCCCSGGGEEECTTS----CEEECCCTTCEECSSCCCCSCCSCGGGCCHHHHSTTCCCC-----THHHHHHHHH
T ss_pred             CC--ccccCCchHHeEEeCCC----CEEecccceeeecCCCCCCCccCCcCccCHHHHhCCCCCC-----cHHHHHHHHH
Confidence            99  99999999999998887    69999999998775433   468899999986632 2222     1258999999


Q ss_pred             eheecccCC
Q 024842          254 LMRELMFGR  262 (262)
Q Consensus       254 ~~~~l~~G~  262 (262)
                      ++|||++|+
T Consensus       380 ilYEmLtG~  388 (689)
T 3v5w_A          380 MLFKLLRGH  388 (689)
T ss_dssp             HHHHHHHSS
T ss_pred             HHHHHHhCC
Confidence            999999885

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=100.00  E-value=2.7e-39  Score=285.65  Aligned_cols=193  Identities=26%  Similarity=0.419  Sum_probs=161.5

Q ss_pred             CceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCCCC
Q 024842           26 NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSHR  105 (262)
Q Consensus        26 ~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~h~  105 (262)
                      ++|++.+.||+|+||.||+|++..+++                      .||+|++........+.+.+|+.+|+.++||
T Consensus       157 ~~Y~i~~~lG~G~fg~V~~~~~~~tg~----------------------~~AiK~i~~~~~~~~~~~~~Ei~il~~l~hp  214 (573)
T 3uto_A          157 DHYDIHEELGTGAFGVVHRVTERATGN----------------------NFAAKFVMTPHESDKETVRKEIQTMSVLRHP  214 (573)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTCC----------------------EEEEEEEECCSHHHHHHHHHHHHHHHHTCCT
T ss_pred             cccEEEEEEeeccCeEEEEEEECCCCC----------------------EEEEEEEeccchhhHHHHHHHHHHHHhCCCC
Confidence            589999999999999999999987765                      6788877766666677889999999999999


Q ss_pred             CccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeeec
Q 024842          106 NLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHN  185 (262)
Q Consensus       106 ~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~  185 (262)
                      ||++++++|          ......|++|||+.+|+|.+++.   .....+++..+..+++||+.||+|||+++  |+||
T Consensus       215 nIv~l~~~~----------~~~~~~~iv~E~~~gg~L~~~i~---~~~~~l~e~~~~~~~~qi~~al~ylH~~~--iiHR  279 (573)
T 3uto_A          215 TLVNLHDAF----------EDDNEMVMIYEFMSGGELFEKVA---DEHNKMSEDEAVEYMRQVCKGLCHMHENN--YVHL  279 (573)
T ss_dssp             TBCCEEEEE----------ECSSEEEEEEECCCCCBHHHHHT---CTTSCEEHHHHHHHHHHHHHHHHHHHHTT--EECC
T ss_pred             CCCeEEEEE----------EECCEEEEEEeecCCCcHHHHHH---HhCCCCCHHHHHHHHHHHHHHHHHHHHCC--eeec
Confidence            999999998          44678999999999999998874   23456999999999999999999999999  9999


Q ss_pred             CCCCCcEEEecCCCCCCceEEeeccceeeccccC----ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecccC
Q 024842          186 DVKPGNILITCRKGQPPLAILMDFGSARPAQSKF----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMFG  261 (262)
Q Consensus       186 dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~G  261 (262)
                      ||||+|||++.+..  ..+||+|||+|..+.+..    ..|++.|++||-+..-++.     ...|+||+|+++|+|++|
T Consensus       280 DlKp~Nill~~~~~--~~vKl~DFG~a~~~~~~~~~~~~~GT~~y~APEv~~~~~y~-----~~~DiWSlGvilyeml~G  352 (573)
T 3uto_A          280 DLKPENIMFTTKRS--NELKLIDFGLTAHLDPKQSVKVTTGTAEFAAPEVAEGKPVG-----YYTDMWSVGVLSYILLSG  352 (573)
T ss_dssp             CCCGGGEEESSSSC--CCEEECCCSSCEECCTTSEEEEECSSGGGCCHHHHTTCCBC-----HHHHHHHHHHHHHHHHHS
T ss_pred             cCChhhccccCCCC--CCEEEeeccceeEccCCCceeeeEECccccCHHHhCCCCCC-----cHHHHHHHHHHHHHHHHC
Confidence            99999999975421  169999999999876543    2588889998866543322     235888888888888887


Q ss_pred             C
Q 024842          262 R  262 (262)
Q Consensus       262 ~  262 (262)
                      +
T Consensus       353 ~  353 (573)
T 3uto_A          353 L  353 (573)
T ss_dssp             C
T ss_pred             C
Confidence            5

>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*

Probab=100.00  E-value=2.3e-39  Score=271.07  Aligned_cols=191  Identities=20%  Similarity=0.307  Sum_probs=149.8

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhC-C
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLF-S  103 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l-~  103 (262)
                      .++|++.+.||+|+||.||+|++.....                   .++.||+|++.....  ..++.+|+++++.+ +
T Consensus        20 ~~~Y~i~~~lG~G~fg~Vy~a~~~~~~~-------------------~~~~vAiK~i~~~~~--~~~~~~E~~~l~~~~~   78 (361)
T 4f9c_A           20 SNVFKIEDKIGEGTFSSVYLATAQLQVG-------------------PEEKIALKHLIPTSH--PIRIAAELQCLTVAGG   78 (361)
T ss_dssp             GGTCEEEEEEEECSSEEEEEEEEEBTTS-------------------CEEEEEEEEECTTSC--HHHHHHHHHHHHHTCS
T ss_pred             cCcEEEEEEEecccCcEEEEEEEcccCC-------------------CCCEEEEEEEccccC--HHHHHHHHHHHHHhcC
Confidence            4689999999999999999998753211                   234688887654432  34577899999988 6


Q ss_pred             CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCee
Q 024842          104 HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYA  183 (262)
Q Consensus       104 h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~iv  183 (262)
                      ||||++++++|          ...+..|++|||+.+++|.+++.       .+++.+++.++.||+.||+|||++|  |+
T Consensus        79 h~nIv~l~~~~----------~~~~~~~lvmE~~~g~~L~~~~~-------~l~~~~~~~~~~qll~al~ylH~~g--Ii  139 (361)
T 4f9c_A           79 QDNVMGVKYCF----------RKNDHVVIAMPYLEHESFLDILN-------SLSFQEVREYMLNLFKALKRIHQFG--IV  139 (361)
T ss_dssp             BTTBCCCSEEE----------EETTEEEEEEECCCCCCHHHHHT-------TCCHHHHHHHHHHHHHHHHHHHHTT--EE
T ss_pred             CCCCceEEEEE----------EECCEEEEEEeCCCcccHHHHHc-------CCCHHHHHHHHHHHHHHHHHHHHCC--eE
Confidence            99999999988          34678999999999999998873       2899999999999999999999999  99


Q ss_pred             ecCCCCCcEEEecCCCCCCceEEeeccceeeccccC---------------------------------ccCcccCCccc
Q 024842          184 HNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF---------------------------------ALGQRRYSCRN  230 (262)
Q Consensus       184 H~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~---------------------------------~~~~~~~~~~~  230 (262)
                      ||||||+|||++.+..   .+||+|||+|+...+..                                 ..||+.|.+||
T Consensus       140 HRDiKPeNiLl~~~~~---~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APE  216 (361)
T 4f9c_A          140 HRDVKPSNFLYNRRLK---KYALVDFGLAQGTHDTKIELLKFVQSEAQQERCSQNKCSICLSRRQQVAPRAGTPGFRAPE  216 (361)
T ss_dssp             CSCCSGGGEEEETTTT---EEEECCCTTCEECTTCSCGGGGGC--------------------------CCCCGGGCCHH
T ss_pred             eCcCCHHHeEEeCCCC---eEEECcCCCCcccCCccccccccccccccccccccccccccccccccccccccCccccCHH
Confidence            9999999999986522   69999999998654221                                 14677788777


Q ss_pred             chhhhhhhhhhhhhcCcccchheeheecccCC
Q 024842          231 GLLSIVLHLSELLSCGTVRVIQILMRELMFGR  262 (262)
Q Consensus       231 d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~G~  262 (262)
                      -+.....    .....|+||+|+++|||++|+
T Consensus       217 ~l~~~~~----y~~~~DiWSlG~il~ell~G~  244 (361)
T 4f9c_A          217 VLTKCPN----QTTAIDMWSAGVIFLSLLSGR  244 (361)
T ss_dssp             HHTTCSC----CCTHHHHHHHHHHHHHHHHTC
T ss_pred             HHcCCCC----CCCccchhhhHHHHHHHHHCC
Confidence            5533210    112248888888888888885

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A

Probab=100.00  E-value=1.6e-36  Score=251.47  Aligned_cols=192  Identities=21%  Similarity=0.308  Sum_probs=157.3

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc--chHHHHHHHHHHHHhhhC
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ--NNEQLEMVREEIRVSSLF  102 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~--~~~~~~~~~~E~~~l~~l  102 (262)
                      .++|++.+.||+|+||.||+|++..+++                      .||+|++...  .....+.+.+|+.+++.+
T Consensus        14 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~----------------------~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l   71 (328)
T 3fe3_A           14 IGNYRLLKTIGKGNFAKVKLARHILTGR----------------------EVAIKIIDKTQLNPTSLQKLFREVRIMKIL   71 (328)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEETTTCC----------------------EEEEEEEEGGGSCHHHHHHHHHHHHHHHHC
T ss_pred             cCCEEEEEEEeeCCCEEEEEEEECCCCC----------------------EEEEEEEEhhcCCHHHHHHHHHHHHHHHhC
Confidence            4689999999999999999999987655                      6777776543  344567788999999999


Q ss_pred             CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCe
Q 024842          103 SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPY  182 (262)
Q Consensus       103 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~i  182 (262)
                      +||||+++++++          ......|++|||+.+++|.+++.    ....+++..++.++.|++.||+|||+++  |
T Consensus        72 ~hpnIv~l~~~~----------~~~~~~~lv~e~~~~~~L~~~l~----~~~~l~~~~~~~~~~qi~~al~~lH~~~--i  135 (328)
T 3fe3_A           72 NHPNIVKLFEVI----------ETEKTLYLIMEYASGGEVFDYLV----AHGRMKEKEARSKFRQIVSAVQYCHQKR--I  135 (328)
T ss_dssp             CCTTBCCEEEEE----------ECSSEEEEEECCCTTCBHHHHHH----HHCCCCHHHHHHHHHHHHHHHHHHHHTT--C
T ss_pred             CCCCEeeEEEEE----------EECCEEEEEEECCCCCcHHHHHH----HcCCCCHHHHHHHHHHHHHHHHHHHHCC--E
Confidence            999999999987          34677999999999999999886    3455999999999999999999999999  9


Q ss_pred             eecCCCCCcEEEecCCCCCCceEEeeccceeeccccC----ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheec
Q 024842          183 AHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMREL  258 (262)
Q Consensus       183 vH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l  258 (262)
                      +||||||+||+++.++    .+||+|||++.......    ..+++.|.+||.+....+.    ....|+||+|+++|+|
T Consensus       136 vHrDlkp~NIll~~~~----~~kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~----~~~~DiwslG~il~el  207 (328)
T 3fe3_A          136 VHRDLKAENLLLDADM----NIKIADFGFSNEFTVGGKLDAFCGAPPYAAPELFQGKKYD----GPEVDVWSLGVILYTL  207 (328)
T ss_dssp             CCSCCCGGGEEECTTS----CEEECSTTCCGGGSSSCGGGTTSSSGGGCCHHHHHTCCCC----SHHHHHHHHHHHHHHH
T ss_pred             eccCCCHHHEEEcCCC----CEEEeeccCceecCCCCccccccCCcceeCcccccCCCcC----CchhhhhhhHHHHHHH
Confidence            9999999999998776    69999999997654332    3577788888765432211    1135888888888888


Q ss_pred             ccCC
Q 024842          259 MFGR  262 (262)
Q Consensus       259 ~~G~  262 (262)
                      ++|+
T Consensus       208 l~g~  211 (328)
T 3fe3_A          208 VSGS  211 (328)
T ss_dssp             HHSS
T ss_pred             HhCC
Confidence            8875

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}

Probab=100.00  E-value=1.6e-35  Score=243.67  Aligned_cols=196  Identities=19%  Similarity=0.210  Sum_probs=158.6

Q ss_pred             ceeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHh
Q 024842           20 DVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVS   99 (262)
Q Consensus        20 ~~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l   99 (262)
                      ...+..++|++.+.||+|+||.||+|.+..+++                      .+++|++........+.+.+|+.++
T Consensus         4 ~~~~~~~~~~~~~~lG~G~~g~V~~~~~~~~~~----------------------~va~K~~~~~~~~~~~~~~~E~~~l   61 (310)
T 3s95_A            4 HRIFRPSDLIHGEVLGKGCFGQAIKVTHRETGE----------------------VMVMKELIRFDEETQRTFLKEVKVM   61 (310)
T ss_dssp             CEEECGGGEEEEEEEECCSSEEEEEEEETTTCC----------------------EEEEEEESCCCHHHHHHHHHHHHHH
T ss_pred             ceeeChhHeeccceecCCCCEEEEEEEECCCCc----------------------EEEEEEeccCCHHHHHHHHHHHHHH
Confidence            345667899999999999999999999987655                      6788877666667778899999999


Q ss_pred             hhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCC
Q 024842          100 SLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLE  179 (262)
Q Consensus       100 ~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~  179 (262)
                      +.++||||+++++++.          .....+++|||+.+++|.+++..   ....+++..++.++.|++.||+|||+.+
T Consensus        62 ~~l~hp~iv~~~~~~~----------~~~~~~lv~e~~~~~~L~~~l~~---~~~~~~~~~~~~i~~qi~~al~~lH~~~  128 (310)
T 3s95_A           62 RCLEHPNVLKFIGVLY----------KDKRLNFITEYIKGGTLRGIIKS---MDSQYPWSQRVSFAKDIASGMAYLHSMN  128 (310)
T ss_dssp             TTCCCTTBCCEEEEEE----------ETTEEEEEEECCTTCBHHHHHHH---CCTTSCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HhCCCcCcccEEEEEe----------cCCeeEEEEEecCCCcHHHHHHh---ccCCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence            9999999999999873          35679999999999999998863   2456999999999999999999999999


Q ss_pred             CCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-------------------ccCcccCCcccchhhhhhhhh
Q 024842          180 PPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-------------------ALGQRRYSCRNGLLSIVLHLS  240 (262)
Q Consensus       180 ~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-------------------~~~~~~~~~~~d~~s~g~~~~  240 (262)
                        ++||||||+||+++.++    .+||+|||++.......                   ..+++.|.+||.+....    
T Consensus       129 --ivH~dlkp~Nil~~~~~----~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~----  198 (310)
T 3s95_A          129 --IIHRDLNSHNCLVRENK----NVVVADFGLARLMVDEKTQPEGLRSLKKPDRKKRYTVVGNPYWMAPEMINGRS----  198 (310)
T ss_dssp             --EECSCCSTTSEEECTTS----CEEECCCTTCEECC--------------------CCCCSCGGGCCHHHHTTCC----
T ss_pred             --ccCCCCCcCeEEECCCC----CEEEeecccceecccccccccccccccccccccccccCCCcceeCHHHhcCCC----
Confidence              99999999999998776    69999999998754321                   24666677777543321    


Q ss_pred             hhhhcCcccchheeheecccC
Q 024842          241 ELLSCGTVRVIQILMRELMFG  261 (262)
Q Consensus       241 e~~~~~~v~~~g~~~~~l~~G  261 (262)
                       .....|||++|+++|+|++|
T Consensus       199 -~~~~~Di~slG~~l~el~~g  218 (310)
T 3s95_A          199 -YDEKVDVFSFGIVLCEIIGR  218 (310)
T ss_dssp             -CCTHHHHHHHHHHHHHHHHT
T ss_pred             -CCcHHHHHHHHHHHHHHhcC
Confidence             11235777777777777766

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}

Probab=100.00  E-value=3.9e-36  Score=251.47  Aligned_cols=193  Identities=22%  Similarity=0.304  Sum_probs=153.6

Q ss_pred             ecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc---chHHHHHHHHHHHHh
Q 024842           23 INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ---NNEQLEMVREEIRVS   99 (262)
Q Consensus        23 ~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~---~~~~~~~~~~E~~~l   99 (262)
                      +..++|++.+.||+|+||.||+|++..+++                      .||+|++...   .....+.+..|..++
T Consensus        20 ~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~----------------------~~AvK~~~~~~~~~~~~~~~~~~E~~il   77 (353)
T 3txo_A           20 LGIDNFEFIRVLGKGSFGKVMLARVKETGD----------------------LYAVKVLKKDVILQDDDVECTMTEKRIL   77 (353)
T ss_dssp             ---CCEEEEEEEEEETTEEEEEEEETTTCC----------------------EEEEEEEEHHHHHHHTTHHHHHHHHHHH
T ss_pred             CchhheEEEEEEeeCCCEEEEEEEEcCCCC----------------------EEEEEEEEHHHhcchhHHHHHHHHHHHH
Confidence            446789999999999999999999987655                      5777766433   223345677899999


Q ss_pred             hhC-CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcC
Q 024842          100 SLF-SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSL  178 (262)
Q Consensus       100 ~~l-~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~  178 (262)
                      +.+ +||||+++++++          ......|++|||+.+++|.+++.    ....+++..++.++.||+.||+|||++
T Consensus        78 ~~~~~hp~Iv~l~~~~----------~~~~~~~lv~E~~~gg~L~~~l~----~~~~~~~~~~~~~~~qi~~aL~~LH~~  143 (353)
T 3txo_A           78 SLARNHPFLTQLFCCF----------QTPDRLFFVMEFVNGGDLMFHIQ----KSRRFDEARARFYAAEIISALMFLHDK  143 (353)
T ss_dssp             HHTTTCTTBCCEEEEE----------ECSSEEEEEEECCCSCBHHHHHH----HHSSCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HhccCCCceeeEEEEE----------EeCCEEEEEEeCCCCCcHHHHHH----HcCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            887 799999999988          34677999999999999999886    345599999999999999999999999


Q ss_pred             CCCeeecCCCCCcEEEecCCCCCCceEEeeccceeecccc-----CccCcccCCcccchhhhhhhhhhhhhcCcccchhe
Q 024842          179 EPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSK-----FALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQI  253 (262)
Q Consensus       179 ~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~-----~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~  253 (262)
                      +  |+||||||+|||++.++    .+||+|||+|......     ...+++.|.+||-+....+     ....|+||+|+
T Consensus       144 g--ivHrDlkp~NILl~~~g----~ikL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-----~~~~DiwslG~  212 (353)
T 3txo_A          144 G--IIYRDLKLDNVLLDHEG----HCKLADFGMCKEGICNGVTTATFCGTPDYIAPEILQEMLY-----GPAVDWWAMGV  212 (353)
T ss_dssp             T--CBCCCCCGGGEEECTTS----CEEECCCTTCBCSCC---------CCGGGCCHHHHHHHHC-----TTHHHHHHHHH
T ss_pred             C--CcccCCCHHHEEECCCC----CEEEccccceeecccCCccccccCCCcCeEChhhcCCCCc-----CCccCCCcchH
Confidence            9  99999999999998777    6999999999864322     2357888888886643322     22368888888


Q ss_pred             eheecccCC
Q 024842          254 LMRELMFGR  262 (262)
Q Consensus       254 ~~~~l~~G~  262 (262)
                      ++|||++|+
T Consensus       213 il~ell~G~  221 (353)
T 3txo_A          213 LLYEMLCGH  221 (353)
T ss_dssp             HHHHHHHSS
T ss_pred             HHHHHHhCC
Confidence            888888885

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}

Probab=100.00  E-value=3.1e-36  Score=255.19  Aligned_cols=195  Identities=22%  Similarity=0.269  Sum_probs=152.4

Q ss_pred             eeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc---chHHHHHHHHHHH
Q 024842           21 VWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ---NNEQLEMVREEIR   97 (262)
Q Consensus        21 ~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~---~~~~~~~~~~E~~   97 (262)
                      ..+..++|++.+.||+|+||.||+|++..+++                      .+|+|++...   .....+.+..|..
T Consensus        47 ~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~----------------------~~AvK~~~k~~~~~~~~~~~~~~E~~  104 (396)
T 4dc2_A           47 SSLGLQDFDLLRVIGRGSYAKVLLVRLKKTDR----------------------IYAMRVVKKELVNDDEDIDWVQTEKH  104 (396)
T ss_dssp             --CCGGGEEEEEEEEECSSEEEEEEEETTTTE----------------------EEEEEEEEGGGTC----CCHHHHHHH
T ss_pred             cCCChhHcEEEEEEeeCCCeEEEEEEECCCCC----------------------EEEEEEEEhhhccCHHHHHHHHHHHH
Confidence            34556899999999999999999999987765                      5666655433   2233345778888


Q ss_pred             HhhhC-CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHH
Q 024842           98 VSSLF-SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMH  176 (262)
Q Consensus        98 ~l~~l-~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH  176 (262)
                      +++.+ +||||+++++++          ......|++|||+.+++|.+++.    ....+++..++.++.||+.||.|||
T Consensus       105 il~~~~~hp~Iv~l~~~~----------~~~~~~~lV~E~~~gg~L~~~l~----~~~~l~~~~~~~~~~qi~~aL~~LH  170 (396)
T 4dc2_A          105 VFEQASNHPFLVGLHSCF----------QTESRLFFVIEYVNGGDLMFHMQ----RQRKLPEEHARFYSAEISLALNYLH  170 (396)
T ss_dssp             HHHHHTTCTTBCCEEEEE----------ECSSEEEEEEECCTTCBHHHHHH----HHSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhcCCCCCcCeeEEEE----------EECCEEEEEEEcCCCCcHHHHHH----HcCCCCHHHHHHHHHHHHHHHHHHH
Confidence            88776 899999999988          34678999999999999998886    3456999999999999999999999


Q ss_pred             cCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccc-----cCccCcccCCcccchhhhhhhhhhhhhcCcccch
Q 024842          177 SLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQS-----KFALGQRRYSCRNGLLSIVLHLSELLSCGTVRVI  251 (262)
Q Consensus       177 ~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~-----~~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~  251 (262)
                      +++  |+||||||+|||++.++    .+||+|||+|.....     ....+++.|.+||-+...++.     ...|+||+
T Consensus       171 ~~g--ivHrDLKp~NILl~~~g----~ikL~DFGla~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~~-----~~~Diwsl  239 (396)
T 4dc2_A          171 ERG--IIYRDLKLDNVLLDSEG----HIKLTDYGMCKEGLRPGDTTSTFCGTPNYIAPEILRGEDYG-----FSVDWWAL  239 (396)
T ss_dssp             HTT--CBCCCCCGGGEEECTTS----CEEECCCTTCBCCCCTTCCBCCCCBCGGGCCHHHHTTCCBC-----THHHHHHH
T ss_pred             HCC--EEeccCCHHHEEECCCC----CEEEeecceeeecccCCCccccccCCcccCCchhhcCCCCC-----hHHHHHHH
Confidence            999  99999999999998777    699999999986322     223577788888765443221     23578888


Q ss_pred             heeheecccCC
Q 024842          252 QILMRELMFGR  262 (262)
Q Consensus       252 g~~~~~l~~G~  262 (262)
                      |+++|||++|+
T Consensus       240 Gvllyell~G~  250 (396)
T 4dc2_A          240 GVLMFEMMAGR  250 (396)
T ss_dssp             HHHHHHHHHSS
T ss_pred             HHHHHHHHhCC
Confidence            88888887774

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A

Probab=100.00  E-value=5.6e-36  Score=250.62  Aligned_cols=198  Identities=19%  Similarity=0.219  Sum_probs=157.6

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc-----hHHHHHHHHHHHHh
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN-----NEQLEMVREEIRVS   99 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~-----~~~~~~~~~E~~~l   99 (262)
                      .++|++.+.||+|+||.||+|++..+++                      .||+|++....     ....+.+.+|+.++
T Consensus        23 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~----------------------~vavK~~~~~~~~~~~~~~~~~~~~E~~~l   80 (351)
T 3c0i_A           23 EDVYELCEVIGKGPFSVVRRCINRETGQ----------------------QFAVKIVDVAKFTSSPGLSTEDLKREASIC   80 (351)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTCC----------------------EEEEEEEEHHHHHTSSSCCHHHHHHHHHHH
T ss_pred             ccceEEeeEEeeCCCEEEEEEEECCCCC----------------------EEEEEEEEhhhccccccchHHHHHHHHHHH
Confidence            5789999999999999999999987655                      56777654321     11346788999999


Q ss_pred             hhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCC
Q 024842          100 SLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLE  179 (262)
Q Consensus       100 ~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~  179 (262)
                      +.++||||+++++++          ......|++|||+.+++|.+.+.........+++..++.++.|++.||.|||+++
T Consensus        81 ~~l~hpnIv~~~~~~----------~~~~~~~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~  150 (351)
T 3c0i_A           81 HMLKHPHIVELLETY----------SSDGMLYMVFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQILEALRYCHDNN  150 (351)
T ss_dssp             HHCCCTTBCCEEEEE----------EETTEEEEEEECCSSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HhCCCCCCCcEEEEE----------EeCCEEEEEEeCCCCCCHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            999999999999987          3367799999999999999887655545556899999999999999999999999


Q ss_pred             CCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-----ccCcccCCcccchhhhhhhhhhhhhcCcccchhee
Q 024842          180 PPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQIL  254 (262)
Q Consensus       180 ~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~  254 (262)
                        |+||||||+|||++.++. ...+||+|||++.......     ..+++.|.+||.+....+     ....|+||+|++
T Consensus       151 --ivHrDlkp~NIl~~~~~~-~~~vkl~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-----~~~~DiwslG~i  222 (351)
T 3c0i_A          151 --IIHRDVKPHCVLLASKEN-SAPVKLGGFGVAIQLGESGLVAGGRVGTPHFMAPEVVKREPY-----GKPVDVWGCGVI  222 (351)
T ss_dssp             --EECSCCSGGGEEECSSST-TCCEEECCCTTCEECCTTSCBCCCCCSCGGGCCHHHHTTCCB-----CTHHHHHHHHHH
T ss_pred             --ceeccCChHHeEEecCCC-CCcEEEecCcceeEecCCCeeecCCcCCcCccCHHHHcCCCC-----CchHhhHHHHHH
Confidence              999999999999986542 2259999999998765432     246778888876543221     123578888888


Q ss_pred             heecccCC
Q 024842          255 MRELMFGR  262 (262)
Q Consensus       255 ~~~l~~G~  262 (262)
                      +|+|++|+
T Consensus       223 l~~ll~g~  230 (351)
T 3c0i_A          223 LFILLSGC  230 (351)
T ss_dssp             HHHHHHSS
T ss_pred             HHHHHHCC
Confidence            88888774

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...

Probab=100.00  E-value=4.7e-36  Score=249.48  Aligned_cols=192  Identities=23%  Similarity=0.258  Sum_probs=155.1

Q ss_pred             cCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc---chHHHHHHHHHHHHhh
Q 024842           24 NENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ---NNEQLEMVREEIRVSS  100 (262)
Q Consensus        24 ~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~---~~~~~~~~~~E~~~l~  100 (262)
                      ..++|++.+.||+|+||.||+|++..+++                      .||+|.+...   .......+.+|+.+++
T Consensus         3 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~----------------------~vaiK~~~~~~~~~~~~~~~~~~E~~~l~   60 (337)
T 1o6l_A            3 TMNDFDYLKLLGKGTFGKVILVREKATGR----------------------YYAMKILRKEVIIAKDEVAHTVTESRVLQ   60 (337)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEETTTCC----------------------EEEEEEEEHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ChHHeEEEEEEecCCCeEEEEEEECCCCC----------------------EEEEEEEeHHHhhhhhHHHHHHHHHHHHH
Confidence            35789999999999999999999887655                      5777766432   2223466788999999


Q ss_pred             hCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCC
Q 024842          101 LFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEP  180 (262)
Q Consensus       101 ~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~  180 (262)
                      .++||||+++++.+          ......|++|||+.+++|.+++.    ....+++..++.++.|++.||.|||+++ 
T Consensus        61 ~l~hp~iv~l~~~~----------~~~~~~~lv~E~~~gg~L~~~l~----~~~~~~~~~~~~~~~qi~~aL~~LH~~~-  125 (337)
T 1o6l_A           61 NTRHPFLTALKYAF----------QTHDRLCFVMEYANGGELFFHLS----RERVFTEERARFYGAEIVSALEYLHSRD-  125 (337)
T ss_dssp             SCCCTTBCCEEEEE----------ECSSEEEEEEECCTTCBHHHHHH----HHSCCCHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred             hCCCCcCcceEEEE----------EeCCEEEEEEeCCCCCcHHHHHH----hcCCCCHHHHHHHHHHHHHHHHHHHHCC-
Confidence            99999999999988          34678999999999999998886    3456999999999999999999999999 


Q ss_pred             CeeecCCCCCcEEEecCCCCCCceEEeeccceeecccc-----CccCcccCCcccchhhhhhhhhhhhhcCcccchheeh
Q 024842          181 PYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSK-----FALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILM  255 (262)
Q Consensus       181 ~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~-----~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~  255 (262)
                       |+||||||+|||++.++    .+||+|||++......     ...+++.|.+||.+..-++     ....|+||+|+++
T Consensus       126 -ivHrDlkp~NIll~~~g----~vkL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-----~~~~DiwslG~il  195 (337)
T 1o6l_A          126 -VVYRDIKLENLMLDKDG----HIKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLEDNDY-----GRAVDWWGLGVVM  195 (337)
T ss_dssp             -CBCCCCCGGGEEECTTS----CEEECCCTTCBCSCCTTCCBCCCEECGGGCCGGGGSSSCB-----CTTHHHHHHHHHH
T ss_pred             -eecCcCCHHHEEECCCC----CEEEeeccchhhcccCCCcccccccChhhCChhhhcCCCC-----CchhhcccchhHH
Confidence             99999999999998777    6999999999864321     2346778888886643322     2246788888888


Q ss_pred             eecccCC
Q 024842          256 RELMFGR  262 (262)
Q Consensus       256 ~~l~~G~  262 (262)
                      |||++|+
T Consensus       196 ~ell~g~  202 (337)
T 1o6l_A          196 YEMMCGR  202 (337)
T ss_dssp             HHHHHSS
T ss_pred             HHHhcCC
Confidence            8888774

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*

Probab=100.00  E-value=6.8e-36  Score=247.28  Aligned_cols=205  Identities=20%  Similarity=0.250  Sum_probs=160.4

Q ss_pred             CCCCceeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHH
Q 024842           16 NGGGDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREE   95 (262)
Q Consensus        16 ~~~~~~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E   95 (262)
                      ....+..+..++|++.+.||+|+||.||+|++..                        ..||+|++...... ......|
T Consensus        14 ~~~~n~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~------------------------~~vavK~~~~~~~~-~~~~~~E   68 (322)
T 3soc_A           14 LGTENLYFQSMPLQLLEVKARGRFGCVWKAQLLN------------------------EYVAVKIFPIQDKQ-SWQNEYE   68 (322)
T ss_dssp             CCCCCEEETTEEEEEEEEEECSTTCEEEEEEETT------------------------EEEEEEEECGGGHH-HHHHHHH
T ss_pred             cCccccccchhhchhhheecccCceEEEEEEECC------------------------CEEEEEEeecCchH-HHHHHHH
Confidence            3556788889999999999999999999998752                        36888887655433 3455668


Q ss_pred             HHHhhhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHH
Q 024842           96 IRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHM  175 (262)
Q Consensus        96 ~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~l  175 (262)
                      +.+++.++||||+++++++..      ........+++|||+.+++|.+++.     ...+++..++.++.|++.||.||
T Consensus        69 ~~~l~~l~hpniv~~~~~~~~------~~~~~~~~~lv~e~~~~g~L~~~l~-----~~~~~~~~~~~i~~qi~~al~~L  137 (322)
T 3soc_A           69 VYSLPGMKHENILQFIGAEKR------GTSVDVDLWLITAFHEKGSLSDFLK-----ANVVSWNELCHIAETMARGLAYL  137 (322)
T ss_dssp             HHTSTTCCCTTBCCEEEEEEE------ECSSSEEEEEEEECCTTCBHHHHHH-----HCCBCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCCCCCchhhcceecc------CCCCCceEEEEEecCCCCCHHHHHH-----hcCCCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999998742      1112345799999999999999885     23499999999999999999999


Q ss_pred             HcC----------CCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-------ccCcccCCcccchhhhhhh
Q 024842          176 HSL----------EPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-------ALGQRRYSCRNGLLSIVLH  238 (262)
Q Consensus       176 H~~----------~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-------~~~~~~~~~~~d~~s~g~~  238 (262)
                      |+.          +  |+||||||+|||++.++    .+||+|||++.......       ..+++.|.+||.+......
T Consensus       138 H~~~~~l~~~~~~~--ivH~Dlkp~Nill~~~~----~~kL~DFg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~  211 (322)
T 3soc_A          138 HEDIPGLKDGHKPA--ISHRDIKSKNVLLKNNL----TACIADFGLALKFEAGKSAGDTHGQVGTRRYMAPEVLEGAINF  211 (322)
T ss_dssp             TCCEEEETTEEECE--EECSCCSGGGEEECTTC----CEEECCCTTCEEECTTSCCCCCTTCCCCGGGCCHHHHTTCCCC
T ss_pred             HhhccccccccCCC--EEeCCCChHhEEECCCC----eEEEccCCcccccccccCccccccCccCccccCHhhccccccc
Confidence            998          7  99999999999998776    69999999998765332       3467788888866432111


Q ss_pred             hhhhhhcCcccchheeheecccCC
Q 024842          239 LSELLSCGTVRVIQILMRELMFGR  262 (262)
Q Consensus       239 ~~e~~~~~~v~~~g~~~~~l~~G~  262 (262)
                      ........||||+|+++|+|++|+
T Consensus       212 ~~~~~~~~DiwslG~il~el~tg~  235 (322)
T 3soc_A          212 QRDAFLRIDMYAMGLVLWELASRC  235 (322)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTB
T ss_pred             CcCCCccchhHHHHHHHHHHHhCC
Confidence            122223468889999888888873

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*

Probab=100.00  E-value=3.5e-36  Score=246.31  Aligned_cols=190  Identities=19%  Similarity=0.297  Sum_probs=154.4

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCCC
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSH  104 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~h  104 (262)
                      .++|++.+.||+|+||.||+|.+..+++                      .||+|++........+.+.+|+.+++.++|
T Consensus        19 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~----------------------~vaiK~~~~~~~~~~~~~~~E~~~l~~l~h   76 (297)
T 3fxz_A           19 KKKYTRFEKIGQGASGTVYTAMDVATGQ----------------------EVAIRQMNLQQQPKKELIINEILVMRENKN   76 (297)
T ss_dssp             GGTBCCCEEEEEETTEEEEEEEBTTTCC----------------------EEEEEEEEGGGCSCHHHHHHHHHHHHHCCC
T ss_pred             hhceeeeeeeccCCCeEEEEEEECCCCc----------------------EEEEEEeecccccHHHHHHHHHHHHhcCCC
Confidence            5689999999999999999999877655                      677877665544445678899999999999


Q ss_pred             CCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeee
Q 024842          105 RNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAH  184 (262)
Q Consensus       105 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH  184 (262)
                      |||+++++++.          .....+++|||+.+++|.+++.     ...+++..++.++.|++.||.|||+.+  |+|
T Consensus        77 p~iv~~~~~~~----------~~~~~~lv~e~~~~~~L~~~~~-----~~~~~~~~~~~~~~qi~~~l~~lH~~~--i~H  139 (297)
T 3fxz_A           77 PNIVNYLDSYL----------VGDELWVVMEYLAGGSLTDVVT-----ETCMDEGQIAAVCRECLQALEFLHSNQ--VIH  139 (297)
T ss_dssp             TTBCCEEEEEE----------ETTEEEEEEECCTTCBHHHHHH-----HSCCCHHHHHHHHHHHHHHHHHHHHTT--EEC
T ss_pred             CCCCeEeEEEE----------ECCEEEEEEECCCCCCHHHHHh-----hcCCCHHHHHHHHHHHHHHHHHHHhCC--cee
Confidence            99999999873          3567899999999999999885     235999999999999999999999999  999


Q ss_pred             cCCCCCcEEEecCCCCCCceEEeeccceeeccccC-----ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecc
Q 024842          185 NDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELM  259 (262)
Q Consensus       185 ~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~  259 (262)
                      |||||+|||++.++    .+||+|||++.......     ..+++.|.+||.+....+     ....|+||+|+++|+|+
T Consensus       140 ~Dlkp~Nil~~~~~----~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-----~~~~DiwslG~il~ell  210 (297)
T 3fxz_A          140 RDIKSDNILLGMDG----SVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAY-----GPKVDIWSLGIMAIEMI  210 (297)
T ss_dssp             CCCSGGGEEECTTC----CEEECCCTTCEECCSTTCCBCCCCSCGGGCCHHHHHCSCB-----CTHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHEEECCCC----CEEEeeCCCceecCCcccccCCccCCcCccChhhhcCCCC-----CcHHHHHHHHHHHHHHH
Confidence            99999999998776    69999999998765432     356777888775533221     12357777777777777


Q ss_pred             cCC
Q 024842          260 FGR  262 (262)
Q Consensus       260 ~G~  262 (262)
                      +|+
T Consensus       211 ~g~  213 (297)
T 3fxz_A          211 EGE  213 (297)
T ss_dssp             HSS
T ss_pred             hCC
Confidence            764

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*

Probab=100.00  E-value=4.4e-36  Score=257.33  Aligned_cols=199  Identities=22%  Similarity=0.269  Sum_probs=157.5

Q ss_pred             ecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc---hHHHHHHHHHHHHh
Q 024842           23 INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN---NEQLEMVREEIRVS   99 (262)
Q Consensus        23 ~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~---~~~~~~~~~E~~~l   99 (262)
                      +..++|++.+.||+|+||.||+|++..+++                      .||+|++....   ......+.+|..++
T Consensus        71 ~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~----------------------~vAvK~~~~~~~~~~~~~~~~~~E~~il  128 (437)
T 4aw2_A           71 LHREDFEILKVIGRGAFGEVAVVKLKNADK----------------------VFAMKILNKWEMLKRAETACFREERDVL  128 (437)
T ss_dssp             CCGGGEEEEEEEEECSSEEEEEEEETTTTE----------------------EEEEEEEEHHHHHHTTTTCCHHHHHHHH
T ss_pred             CChhheEEEEEEEeCCCEEEEEEEEcCCCc----------------------EEEEEEEEHHHhhhHHHHHHHHHHHHHH
Confidence            446799999999999999999999987655                      56777654321   11123477899999


Q ss_pred             hhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCC
Q 024842          100 SLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLE  179 (262)
Q Consensus       100 ~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~  179 (262)
                      +.++||||+++++++          ......|++|||+.+++|.+++..   ....+++..++.++.|++.||.|||+.+
T Consensus       129 ~~~~hp~Iv~l~~~~----------~~~~~~~lV~Ey~~gg~L~~~l~~---~~~~l~e~~~~~~~~qi~~aL~~LH~~g  195 (437)
T 4aw2_A          129 VNGDSKWITTLHYAF----------QDDNNLYLVMDYYVGGDLLTLLSK---FEDRLPEEMARFYLAEMVIAIDSVHQLH  195 (437)
T ss_dssp             HHSCTTTBCCEEEEE----------ECSSEEEEEECCCTTCBHHHHHHT---TTTCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HhCCCCCEEEEEEEE----------eeCCEEEEEEecCCCCcHHHHHHH---ccCCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence            999999999999988          446779999999999999998862   2456999999999999999999999999


Q ss_pred             CCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC------ccCcccCCcccchhhhhhhhhhhhhcCcccchhe
Q 024842          180 PPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF------ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQI  253 (262)
Q Consensus       180 ~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~------~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~  253 (262)
                        |+||||||+|||++.++    .+||+|||+|.......      ..+++.|.+||-+..............|+||+|+
T Consensus       196 --iiHrDLKp~NILl~~~g----~vkL~DFGla~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~~DvwSlGv  269 (437)
T 4aw2_A          196 --YVHRDIKPDNILMDMNG----HIRLADFGSCLKLMEDGTVQSSVAVGTPDYISPEILQAMEGGKGRYGPECDWWSLGV  269 (437)
T ss_dssp             --EECCCCSGGGEEECTTS----CEEECCCTTCEECCTTSCEECCSCCSCGGGCCHHHHHHHHTSCCEECTHHHHHHHHH
T ss_pred             --eEecccCHHHeeEcCCC----CEEEcchhhhhhcccCCCcccccccCCcCeeChHHHhhcccCCCCCCCcCeeHHHHH
Confidence              99999999999998777    69999999997654322      3578888888866432110011122468999999


Q ss_pred             eheecccCC
Q 024842          254 LMRELMFGR  262 (262)
Q Consensus       254 ~~~~l~~G~  262 (262)
                      ++|||++|+
T Consensus       270 il~elltG~  278 (437)
T 4aw2_A          270 CMYEMLYGE  278 (437)
T ss_dssp             HHHHHHHSS
T ss_pred             HHHHHHhCC
Confidence            999999885

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*

Probab=100.00  E-value=1.5e-35  Score=248.64  Aligned_cols=195  Identities=25%  Similarity=0.322  Sum_probs=155.4

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccch------HHHHHHHHHHHH
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNN------EQLEMVREEIRV   98 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~------~~~~~~~~E~~~   98 (262)
                      .++|++.+.||+|+||.||+|++..+++                      .+|+|.+.....      ...+.+.+|+.+
T Consensus        11 ~~~y~~~~~LG~G~fg~V~~~~~~~~~~----------------------~~avK~i~~~~~~~~~~~~~~~~~~~E~~i   68 (361)
T 2yab_A           11 EDFYDIGEELGSGQFAIVKKCREKSTGL----------------------EYAAKFIKKRQSRASRRGVCREEIEREVSI   68 (361)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTCC----------------------EEEEEEEEBCSSTTCSSSBCHHHHHHHHHH
T ss_pred             hhceEEeeEEeeCcCEEEEEEEECCCCC----------------------EEEEEEEEccccccccchhHHHHHHHHHHH
Confidence            4689999999999999999999987765                      566665543321      124678899999


Q ss_pred             hhhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcC
Q 024842           99 SSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSL  178 (262)
Q Consensus        99 l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~  178 (262)
                      ++.++||||+++++++          ......+++||++.+++|.+++.    ....+++..++.++.|++.||.|||+.
T Consensus        69 l~~l~hpnIv~l~~~~----------~~~~~~~lv~e~~~gg~L~~~l~----~~~~l~~~~~~~i~~qi~~aL~~LH~~  134 (361)
T 2yab_A           69 LRQVLHPNIITLHDVY----------ENRTDVVLILELVSGGELFDFLA----QKESLSEEEATSFIKQILDGVNYLHTK  134 (361)
T ss_dssp             HTTCCCTTBCCEEEEE----------ECSSEEEEEEECCCSCBHHHHHT----TCSCCBHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHhCCCcCCCcEEEEE----------EeCCEEEEEEEcCCCCcHHHHHH----hcCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            9999999999999987          34677999999999999999885    456699999999999999999999999


Q ss_pred             CCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC----ccCcccCCcccchhhhhhhhhhhhhcCcccchhee
Q 024842          179 EPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQIL  254 (262)
Q Consensus       179 ~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~  254 (262)
                      +  |+||||||+|||++.++.....+||+|||++.......    ..+++.|.+||-+..-.+     ....|+||+|++
T Consensus       135 g--ivHrDlkp~NIll~~~~~~~~~vkl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-----~~~~DiwslGvi  207 (361)
T 2yab_A          135 K--IAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIEDGVEFKNIFGTPEFVAPEIVNYEPL-----GLEADMWSIGVI  207 (361)
T ss_dssp             T--EECCCCSGGGEEESCTTSSSCCEEECCCSSCEECCTTCCCCCCCSCGGGCCHHHHTTCCC-----CTHHHHHHHHHH
T ss_pred             C--cccCCCCHHHEEEeCCCCCccCEEEEecCCceEcCCCCccccCCCCccEECchHHcCCCC-----CccccHHHHHHH
Confidence            9  99999999999998665434469999999998765432    357777888875432211     123577788877


Q ss_pred             heecccCC
Q 024842          255 MRELMFGR  262 (262)
Q Consensus       255 ~~~l~~G~  262 (262)
                      +|+|++|+
T Consensus       208 l~~ll~g~  215 (361)
T 2yab_A          208 TYILLSGA  215 (361)
T ss_dssp             HHHHHHSC
T ss_pred             HHHHHhCC
Confidence            77777774

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*

Probab=100.00  E-value=1.4e-35  Score=244.11  Aligned_cols=211  Identities=19%  Similarity=0.257  Sum_probs=150.4

Q ss_pred             hhhhhccCCCCCceeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc--c
Q 024842            8 LNALYDSVNGGGDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ--N   85 (262)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~--~   85 (262)
                      .|.+++..-.+.+..+..++|++.+.||+|+||.||+|++.  +                      ..+|+|++...  .
T Consensus        19 ~~~~~~~~~~~~~~~i~~~~y~i~~~lG~G~~g~V~~~~~~--~----------------------~~vavK~~~~~~~~   74 (309)
T 3p86_A           19 ENLYFQGAMDGDDMDIPWCDLNIKEKIGAGSFGTVHRAEWH--G----------------------SDVAVKILMEQDFH   74 (309)
T ss_dssp             -------------CBCCGGGEEEEEEEEECSSEEEEEEEET--T----------------------EEEEEEEECCCCCS
T ss_pred             ccceeccCCCcccccCChhHceeeeEeecCCCeEEEEEEEC--C----------------------CcEEEEEecCCCCC
Confidence            45556666677777788999999999999999999999863  2                      25777776544  3


Q ss_pred             hHHHHHHHHHHHHhhhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHH
Q 024842           86 NEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIF  165 (262)
Q Consensus        86 ~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~  165 (262)
                      ....+.+.+|+.+++.++||||+++++++          ......+++|||+.+++|.+++..... ...+++..++.++
T Consensus        75 ~~~~~~~~~E~~~l~~l~hp~iv~~~~~~----------~~~~~~~lv~e~~~~~~L~~~l~~~~~-~~~~~~~~~~~i~  143 (309)
T 3p86_A           75 AERVNEFLREVAIMKRLRHPNIVLFMGAV----------TQPPNLSIVTEYLSRGSLYRLLHKSGA-REQLDERRRLSMA  143 (309)
T ss_dssp             HHHHHHHHHHHHHHHHCCCTTBCCEEEEE----------CSTTCCEEEEECCTTCBHHHHHHSTTH-HHHSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCCCEeeEEEEE----------EECCceEEEEecCCCCcHHHHHhhcCC-CCCCCHHHHHHHH
Confidence            44456788999999999999999999987          445678999999999999998863211 1238999999999


Q ss_pred             HHHHHHHHHHHcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeecccc-----CccCcccCCcccchhhhhhhhh
Q 024842          166 YQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSK-----FALGQRRYSCRNGLLSIVLHLS  240 (262)
Q Consensus       166 ~ql~~~l~~lH~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~-----~~~~~~~~~~~~d~~s~g~~~~  240 (262)
                      .|++.||.|||+.+++|+||||||+||+++.++    .+||+|||++......     ...+++.|.+||.+.....   
T Consensus       144 ~qi~~aL~~LH~~~~~ivH~Dikp~NIll~~~~----~~kL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~---  216 (309)
T 3p86_A          144 YDVAKGMNYLHNRNPPIVHRNLKSPNLLVDKKY----TVKVCDFGLSRLKASTFLSSKSAAGTPEWMAPEVLRDEPS---  216 (309)
T ss_dssp             HHHHHHHHHHHTSSSCCCCTTCCGGGEEECTTC----CEEECCCC-----------------CCTTSCHHHHTTCCC---
T ss_pred             HHHHHHHHHHHcCCCCEECCCCChhhEEEeCCC----cEEECCCCCCccccccccccccCCCCccccChhhhcCCCC---
Confidence            999999999999777799999999999998776    6999999999765433     2356777888775533221   


Q ss_pred             hhhhcCcccchheeheecccCC
Q 024842          241 ELLSCGTVRVIQILMRELMFGR  262 (262)
Q Consensus       241 e~~~~~~v~~~g~~~~~l~~G~  262 (262)
                        ....||||+|+++|+|++|+
T Consensus       217 --~~~~DiwslG~il~elltg~  236 (309)
T 3p86_A          217 --NEKSDVYSFGVILWELATLQ  236 (309)
T ss_dssp             --CTTHHHHHHHHHHHHHHHCC
T ss_pred             --CchhhHHHHHHHHHHHHhCC
Confidence              12357777777777777764

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}

Probab=100.00  E-value=1.6e-35  Score=242.01  Aligned_cols=191  Identities=29%  Similarity=0.474  Sum_probs=152.7

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhc---cchHHHHHHHHHHHHhhh
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLI---QNNEQLEMVREEIRVSSL  101 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~---~~~~~~~~~~~E~~~l~~  101 (262)
                      .++|++.+.||+|+||.||+|++..+++                      .+|+|.+..   ......+.+.+|+.+++.
T Consensus        10 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~----------------------~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~   67 (294)
T 4eqm_A           10 NERYKIVDKLGGGGMSTVYLAEDTILNI----------------------KVAIKAIFIPPREKEETLKRFEREVHNSSQ   67 (294)
T ss_dssp             ETTEEEEEEEEEETTEEEEEEEETTTCS----------------------EEEEEEEECCSSCCHHHHHHHHHHHHHHTT
T ss_pred             hccEEEEEEEccCCCEEEEEEEECCCCC----------------------eEEEEEeccCccccHHHHHHHHHHHHHHhc
Confidence            6789999999999999999999887655                      567776543   234456788999999999


Q ss_pred             CCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCC
Q 024842          102 FSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPP  181 (262)
Q Consensus       102 l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~  181 (262)
                      ++||||+++++++          ...+..+++|||+.+++|.+++.    ...++++..++.++.|++.||.|||+++  
T Consensus        68 l~hp~iv~~~~~~----------~~~~~~~lv~e~~~g~~L~~~l~----~~~~~~~~~~~~~~~qi~~~l~~lH~~~--  131 (294)
T 4eqm_A           68 LSHQNIVSMIDVD----------EEDDCYYLVMEYIEGPTLSEYIE----SHGPLSVDTAINFTNQILDGIKHAHDMR--  131 (294)
T ss_dssp             CCBTTBCCEEEEE----------ECSSEEEEEEECCCSCBHHHHHH----HHCSCCHHHHHHHHHHHHHHHHHHHHTT--
T ss_pred             CCCCCCceEEEee----------eeCCeEEEEEeCCCCCCHHHHHH----hcCCCCHHHHHHHHHHHHHHHHHHHHCC--
Confidence            9999999999987          44677999999999999999886    3456999999999999999999999999  


Q ss_pred             eeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC------ccCcccCCcccchhhhhhhhhhhhhcCcccchheeh
Q 024842          182 YAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF------ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILM  255 (262)
Q Consensus       182 ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~------~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~  255 (262)
                      ++||||||+||+++.++    .+||+|||++.......      ..+++.|.+||.+.....     ....|+||+|+++
T Consensus       132 i~H~Dlkp~Nil~~~~~----~~kl~Dfg~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-----~~~~Di~slG~~l  202 (294)
T 4eqm_A          132 IVHRDIKPQNILIDSNK----TLKIFDFGIAKALSETSLTQTNHVLGTVQYFSPEQAKGEAT-----DECTDIYSIGIVL  202 (294)
T ss_dssp             CCCCCCCGGGEEECTTS----CEEECCCSSSTTC-------------CCSSCCHHHHHTCCC-----CTTHHHHHHHHHH
T ss_pred             cccCCCCHHHEEECCCC----CEEEEeCCCccccccccccccCccccCccccCHhHhcCCCC-----CchHhHHHHHHHH
Confidence            99999999999998776    69999999997654322      346778888875533221     1235788888888


Q ss_pred             eecccCC
Q 024842          256 RELMFGR  262 (262)
Q Consensus       256 ~~l~~G~  262 (262)
                      |+|++|+
T Consensus       203 ~~ll~g~  209 (294)
T 4eqm_A          203 YEMLVGE  209 (294)
T ss_dssp             HHHHHSS
T ss_pred             HHHHhCC
Confidence            8877774

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7

Probab=100.00  E-value=1.6e-35  Score=244.41  Aligned_cols=192  Identities=22%  Similarity=0.294  Sum_probs=155.7

Q ss_pred             cCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc---hHHHHHHHHHHHHhh
Q 024842           24 NENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN---NEQLEMVREEIRVSS  100 (262)
Q Consensus        24 ~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~---~~~~~~~~~E~~~l~  100 (262)
                      ..++|++.+.||+|+||.||+|++..+++                      .||+|.+....   ....+.+.+|..+++
T Consensus         4 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~----------------------~~aiK~~~~~~~~~~~~~~~~~~E~~~l~   61 (318)
T 1fot_A            4 SLQDFQILRTLGTGSFGRVHLIRSRHNGR----------------------YYAMKVLKKEIVVRLKQVEHTNDERLMLS   61 (318)
T ss_dssp             CGGGEEEEEEEEECSSCEEEEEEETTTCC----------------------EEEEEEEEHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ChHHcEEEEEEeeCCCEEEEEEEECCCCC----------------------EEEEEEEEHHHhhhhhHHHHHHHHHHHHh
Confidence            35789999999999999999999887655                      56777654331   223466788999999


Q ss_pred             hCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCC
Q 024842          101 LFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEP  180 (262)
Q Consensus       101 ~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~  180 (262)
                      .++||||+++++++          ......|++|||+.+++|.+++.    ....+++..++.++.|++.||.|||+++ 
T Consensus        62 ~l~hp~Iv~~~~~~----------~~~~~~~lv~e~~~gg~L~~~l~----~~~~~~~~~~~~~~~qi~~aL~~LH~~~-  126 (318)
T 1fot_A           62 IVTHPFIIRMWGTF----------QDAQQIFMIMDYIEGGELFSLLR----KSQRFPNPVAKFYAAEVCLALEYLHSKD-  126 (318)
T ss_dssp             SCCBTTBCCEEEEE----------ECSSEEEEEECCCCSCBHHHHHH----HTSSCCHHHHHHHHHHHHHHHHHHHTTT-
T ss_pred             hCCCCCCceEeEEE----------EeCCEEEEEEeCCCCCCHHHHHH----HcCCCCHHHHHHHHHHHHHHHHHHHHCC-
Confidence            99999999999987          34667999999999999999886    4456999999999999999999999999 


Q ss_pred             CeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC--ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheec
Q 024842          181 PYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF--ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMREL  258 (262)
Q Consensus       181 ~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~--~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l  258 (262)
                       |+||||||+|||++.++    .+||+|||++.......  ..+++.|.+||.+..-++     ....|+||+|+++|+|
T Consensus       127 -ivHrDlkp~NIll~~~g----~~kL~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~~~~-----~~~~DiwslG~il~el  196 (318)
T 1fot_A          127 -IIYRDLKPENILLDKNG----HIKITDFGFAKYVPDVTYTLCGTPDYIAPEVVSTKPY-----NKSIDWWSFGILIYEM  196 (318)
T ss_dssp             -EECCCCCGGGEEECTTS----CEEECCCSSCEECSSCBCCCCSCTTTCCHHHHTTCCB-----CTTHHHHHHHHHHHHH
T ss_pred             -ccccCCChheEEEcCCC----CEEEeecCcceecCCccccccCCccccCHhHhcCCCC-----CcccchhhhHHHHHHH
Confidence             99999999999998776    69999999998765432  357788888886543221     1235788888888888


Q ss_pred             ccCC
Q 024842          259 MFGR  262 (262)
Q Consensus       259 ~~G~  262 (262)
                      ++|+
T Consensus       197 l~g~  200 (318)
T 1fot_A          197 LAGY  200 (318)
T ss_dssp             HHSS
T ss_pred             HhCC
Confidence            8774

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*

Probab=100.00  E-value=5e-36  Score=255.13  Aligned_cols=198  Identities=20%  Similarity=0.250  Sum_probs=158.0

Q ss_pred             eeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc---hHHHHHHHHHHH
Q 024842           21 VWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN---NEQLEMVREEIR   97 (262)
Q Consensus        21 ~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~---~~~~~~~~~E~~   97 (262)
                      ..+..++|++.+.||+|+||.||+|++..+++                      .||+|++....   ....+.+.+|+.
T Consensus        64 ~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~----------------------~~AiK~~~k~~~~~~~~~~~~~~E~~  121 (410)
T 3v8s_A           64 LRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRK----------------------VYAMKLLSKFEMIKRSDSAFFWEERD  121 (410)
T ss_dssp             HSCCGGGEEEEEEEEECSSEEEEEEEETTTCC----------------------EEEEEEEEHHHHHHTCCCSTHHHHHH
T ss_pred             cccCccccEEEEEEEcCCCEEEEEEEECCCCc----------------------EEEEEEEehhhhhhhHHHHHHHHHHH
Confidence            34556899999999999999999999987655                      56777654321   111234778999


Q ss_pred             HhhhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHc
Q 024842           98 VSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHS  177 (262)
Q Consensus        98 ~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~  177 (262)
                      +++.++||||+++++++          ......|++|||+.+++|.+++.     ...+++..++.++.|++.||+|||+
T Consensus       122 il~~l~hp~Iv~l~~~~----------~~~~~~~lV~E~~~gg~L~~~l~-----~~~~~e~~~~~~~~qi~~aL~~LH~  186 (410)
T 3v8s_A          122 IMAFANSPWVVQLFYAF----------QDDRYLYMVMEYMPGGDLVNLMS-----NYDVPEKWARFYTAEVVLALDAIHS  186 (410)
T ss_dssp             HHHHCCCTTBCCEEEEE----------ECSSEEEEEECCCTTEEHHHHHH-----HCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhCCCCCCCeEEEEE----------EECCEEEEEEeCCCCCcHHHHHH-----cCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999988          34677999999999999999875     2348999999999999999999999


Q ss_pred             CCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeecccc------CccCcccCCcccchhhhhhhhhhhhhcCcccch
Q 024842          178 LEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSK------FALGQRRYSCRNGLLSIVLHLSELLSCGTVRVI  251 (262)
Q Consensus       178 ~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~------~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~  251 (262)
                      .+  |+||||||+|||++.++    .+||+|||+|......      ...+++.|.+||-+...+... ......|+||+
T Consensus       187 ~g--ivHrDLKp~NILl~~~g----~ikL~DFG~a~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~-~~~~~~DiwSl  259 (410)
T 3v8s_A          187 MG--FIHRDVKPDNMLLDKSG----HLKLADFGTCMKMNKEGMVRCDTAVGTPDYISPEVLKSQGGDG-YYGRECDWWSV  259 (410)
T ss_dssp             TT--EECCCCSGGGEEECTTS----CEEECCCTTCEECCTTSEEECCSCCSCGGGCCHHHHHTTTTTC-EEETHHHHHHH
T ss_pred             CC--eEeccCCHHHeeECCCC----CEEEeccceeEeeccCCcccccCCcCCccccCHHHhhccCCCc-CCCCcceEecc
Confidence            99  99999999999998777    6999999999876543      345788888888765432110 01123689999


Q ss_pred             heeheecccCC
Q 024842          252 QILMRELMFGR  262 (262)
Q Consensus       252 g~~~~~l~~G~  262 (262)
                      |+++|||++|+
T Consensus       260 Gvilyell~G~  270 (410)
T 3v8s_A          260 GVFLYEMLVGD  270 (410)
T ss_dssp             HHHHHHHHHSS
T ss_pred             hHHHHHHHhCC
Confidence            99999999885

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}

Probab=100.00  E-value=1.4e-35  Score=250.31  Aligned_cols=196  Identities=22%  Similarity=0.309  Sum_probs=156.9

Q ss_pred             ecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc---chHHHHHHHHHHHHh
Q 024842           23 INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ---NNEQLEMVREEIRVS   99 (262)
Q Consensus        23 ~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~---~~~~~~~~~~E~~~l   99 (262)
                      +..++|++.+.||+|+||.||+|++..+++                      .||+|.+...   .....+.+.+|+.++
T Consensus        12 v~~~~y~i~~~LG~G~fG~V~~~~~~~~~~----------------------~~AiK~~~~~~~~~~~~~~~~~~E~~il   69 (384)
T 4fr4_A           12 VNFDHFEILRAIGKGSFGKVCIVQKNDTKK----------------------MYAMKYMNKQKCVERNEVRNVFKELQIM   69 (384)
T ss_dssp             CCGGGEEEEEEEECCTTCCEEEEEETTTCC----------------------EEEEEEEEHHHHHHTTCHHHHHHHHHHH
T ss_pred             CChHHeEEEEEEeeCCCeEEEEEEECCCCC----------------------EEEEEEEehhhcccHHHHHHHHHHHHHH
Confidence            336789999999999999999999987655                      5777765432   222346788999999


Q ss_pred             hhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCC
Q 024842          100 SLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLE  179 (262)
Q Consensus       100 ~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~  179 (262)
                      +.++||||+++++++          ......|++|||+.+++|.+++.    ....+++..++.++.|++.||.|||+++
T Consensus        70 ~~l~hp~Iv~l~~~~----------~~~~~~~lv~e~~~gg~L~~~l~----~~~~l~~~~~~~~~~qi~~aL~~LH~~g  135 (384)
T 4fr4_A           70 QGLEHPFLVNLWYSF----------QDEEDMFMVVDLLLGGDLRYHLQ----QNVHFKEETVKLFICELVMALDYLQNQR  135 (384)
T ss_dssp             HTCCCTTBCCEEEEE----------ECSSEEEEEECCCTTEEHHHHHH----TTCCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HhCCCCCCCcEEEEE----------EeCCEEEEEEecCCCCcHHHHHH----hcCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            999999999999988          34677999999999999999886    4566999999999999999999999999


Q ss_pred             CCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC----ccCcccCCcccchhhhhhhhhhhhhcCcccchheeh
Q 024842          180 PPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILM  255 (262)
Q Consensus       180 ~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~  255 (262)
                        |+||||||+|||++.++    .+||+|||++.......    ..+++.|.+||-+......  ......|+||+|+++
T Consensus       136 --ivHrDlkp~NIll~~~g----~vkL~DFG~a~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~--~~~~~~DiwSlG~il  207 (384)
T 4fr4_A          136 --IIHRDMKPDNILLDEHG----HVHITDFNIAAMLPRETQITTMAGTKPYMAPEMFSSRKGA--GYSFAVDWWSLGVTA  207 (384)
T ss_dssp             --EECCCCSGGGEEECTTS----CEEECCCTTCEECCTTCCBCCCCSCGGGCCGGGTCCCSSC--CBCTTHHHHHHHHHH
T ss_pred             --ceeccCcHHHeEECCCC----CEEEeccceeeeccCCCceeccCCCccccCCeeeccCCCC--CCCccceeechHHHH
Confidence              99999999999998777    69999999998765332    3577778888765321100  011235788888888


Q ss_pred             eecccCC
Q 024842          256 RELMFGR  262 (262)
Q Consensus       256 ~~l~~G~  262 (262)
                      |+|++|+
T Consensus       208 ~elltG~  214 (384)
T 4fr4_A          208 YELLRGR  214 (384)
T ss_dssp             HHHHHSS
T ss_pred             HHHHhCC
Confidence            8888874

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*

Probab=100.00  E-value=3.8e-35  Score=244.85  Aligned_cols=192  Identities=22%  Similarity=0.272  Sum_probs=154.0

Q ss_pred             cCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc---chHHHHHHHHHHHHhh
Q 024842           24 NENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ---NNEQLEMVREEIRVSS  100 (262)
Q Consensus        24 ~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~---~~~~~~~~~~E~~~l~  100 (262)
                      ..++|++.+.||+|+||.||+|++..+++                      .||+|++...   .....+.+.+|..+++
T Consensus         7 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~----------------------~~aiK~~~~~~~~~~~~~~~~~~E~~~l~   64 (345)
T 3a8x_A            7 GLQDFDLLRVIGRGSYAKVLLVRLKKTDR----------------------IYAMKVVKKELVNDDEDIDWVQTEKHVFE   64 (345)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEETTTTE----------------------EEEEEEEEGGGSCSHHHHHHHHHHHHHHH
T ss_pred             chhheEEEEEEEecCCeEEEEEEECCCCC----------------------EEEEEEEEhHHhcchHHHHHHHHHHHHHH
Confidence            45789999999999999999999987655                      5677766433   3445567888999998


Q ss_pred             hC-CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCC
Q 024842          101 LF-SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLE  179 (262)
Q Consensus       101 ~l-~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~  179 (262)
                      .+ +||||+++++++          ......|++|||+.+++|.+++.    ....+++..++.++.|++.||.|||+++
T Consensus        65 ~~~~hp~iv~l~~~~----------~~~~~~~lv~e~~~gg~L~~~l~----~~~~l~~~~~~~~~~qi~~aL~~LH~~~  130 (345)
T 3a8x_A           65 QASNHPFLVGLHSCF----------QTESRLFFVIEYVNGGDLMFHMQ----RQRKLPEEHARFYSAEISLALNYLHERG  130 (345)
T ss_dssp             HTTTCTTBCCEEEEE----------ECSSEEEEEECCCCSCBHHHHHH----HHSSCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             hcCCCCccCeEEEEE----------EeCCEEEEEEeCCCCCcHHHHHH----HcCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            87 899999999987          34678999999999999998886    3345999999999999999999999999


Q ss_pred             CCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccc-----cCccCcccCCcccchhhhhhhhhhhhhcCcccchhee
Q 024842          180 PPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQS-----KFALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQIL  254 (262)
Q Consensus       180 ~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~-----~~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~  254 (262)
                        |+||||||+|||++.++    .+||+|||++.....     ....+++.|.+||.+..-++     ....|+||+|++
T Consensus       131 --ivHrDlkp~NIll~~~g----~~kL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-----~~~~DiwslG~i  199 (345)
T 3a8x_A          131 --IIYRDLKLDNVLLDSEG----HIKLTDYGMCKEGLRPGDTTSTFCGTPNYIAPEILRGEDY-----GFSVDWWALGVL  199 (345)
T ss_dssp             --CBCCCCCGGGEEECTTS----CEEECCGGGCBCSCCTTCCBCCCCSCGGGCCHHHHTTCCB-----CTHHHHHHHHHH
T ss_pred             --ceecCCCHHHEEECCCC----CEEEEeccccccccCCCCcccccCCCccccCccccCCCCC-----ChHHhHHHHHHH
Confidence              99999999999998776    699999999986322     12357778888875543221     123577777777


Q ss_pred             heecccCC
Q 024842          255 MRELMFGR  262 (262)
Q Consensus       255 ~~~l~~G~  262 (262)
                      +|||++|+
T Consensus       200 l~ell~g~  207 (345)
T 3a8x_A          200 MFEMMAGR  207 (345)
T ss_dssp             HHHHHHSS
T ss_pred             HHHHHhCC
Confidence            77777774

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...

Probab=100.00  E-value=2.7e-35  Score=246.19  Aligned_cols=193  Identities=23%  Similarity=0.295  Sum_probs=156.2

Q ss_pred             ecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc---hHHHHHHHHHHHHh
Q 024842           23 INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN---NEQLEMVREEIRVS   99 (262)
Q Consensus        23 ~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~---~~~~~~~~~E~~~l   99 (262)
                      ...++|++.+.||+|+||.||+|++..+++                      .||+|.+....   ....+.+.+|+.++
T Consensus        38 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~----------------------~~aiK~~~~~~~~~~~~~~~~~~E~~~l   95 (350)
T 1rdq_E           38 AQLDQFDRIKTLGTGSFGRVMLVKHKESGN----------------------HYAMKILDKQKVVKLKQIEHTLNEKRIL   95 (350)
T ss_dssp             CCGGGEEEEEEEEECSSCEEEEEEETTTCC----------------------EEEEEEEEHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCHHHCEEEEEeecCcCcEEEEEEECCCCC----------------------EEEEEEEEhHHhccHHHHHHHHHHHHHH
Confidence            345799999999999999999999887655                      57777654332   22346788899999


Q ss_pred             hhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCC
Q 024842          100 SLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLE  179 (262)
Q Consensus       100 ~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~  179 (262)
                      +.++||||+++++++          ......|++|||+.+++|.+++.    ....+++..++.++.|++.||.|||+++
T Consensus        96 ~~l~hp~iv~~~~~~----------~~~~~~~lv~e~~~gg~L~~~l~----~~~~~~~~~~~~~~~qi~~aL~~LH~~~  161 (350)
T 1rdq_E           96 QAVNFPFLVKLEFSF----------KDNSNLYMVMEYVAGGEMFSHLR----RIGRFSEPHARFYAAQIVLTFEYLHSLD  161 (350)
T ss_dssp             TTCCCTTBCCEEEEE----------ECSSEEEEEEECCTTCBHHHHHH----HHCCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HhCCCCCCCeEEEEE----------EcCCEEEEEEcCCCCCcHHHHHH----HcCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            999999999999887          34677999999999999999886    3345999999999999999999999999


Q ss_pred             CCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC--ccCcccCCcccchhhhhhhhhhhhhcCcccchheehee
Q 024842          180 PPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF--ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRE  257 (262)
Q Consensus       180 ~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~--~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~  257 (262)
                        |+||||||+|||++.++    .+||+|||++.......  ..+++.|.+||.+..-++.     ...|+|++|+++|+
T Consensus       162 --ivHrDlkp~NIll~~~g----~~kL~DFg~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~-----~~~DiwslG~il~e  230 (350)
T 1rdq_E          162 --LIYRDLKPENLLIDQQG----YIQVTDFGFAKRVKGRTWTLCGTPEALAPEIILSKGYN-----KAVDWWALGVLIYE  230 (350)
T ss_dssp             --EECCCCSGGGEEECTTS----CEEECCCTTCEECSSCBCCCEECGGGCCHHHHTTCCBC-----THHHHHHHHHHHHH
T ss_pred             --cccccCccceEEECCCC----CEEEcccccceeccCCcccccCCccccCHHHhcCCCCC-----CcCCEecccHhHhH
Confidence              99999999999998776    69999999998765432  3577788888765433221     23578888888888


Q ss_pred             cccCC
Q 024842          258 LMFGR  262 (262)
Q Consensus       258 l~~G~  262 (262)
                      |++|+
T Consensus       231 ll~g~  235 (350)
T 1rdq_E          231 MAAGY  235 (350)
T ss_dssp             HHHSS
T ss_pred             HhhCC
Confidence            87774

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=100.00  E-value=8.8e-35  Score=240.92  Aligned_cols=195  Identities=19%  Similarity=0.268  Sum_probs=151.9

Q ss_pred             ecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc-chHHHHHHHHHHHHhhh
Q 024842           23 INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ-NNEQLEMVREEIRVSSL  101 (262)
Q Consensus        23 ~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~-~~~~~~~~~~E~~~l~~  101 (262)
                      +..++|++.+.||+|+||.||+|++..+++                   .+..||+|.+... .....+.+.+|+.+++.
T Consensus        46 ~~~~~y~i~~~lG~G~~g~V~~~~~~~~~~-------------------~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~  106 (325)
T 3kul_A           46 IEASRIHIEKIIGSGDSGEVCYGRLRVPGQ-------------------RDVPVAIKALKAGYTERQRRDFLSEASIMGQ  106 (325)
T ss_dssp             CCGGGEEEEEEEEETTTEEEEEEEECCTTS-------------------CCEEEEEEEECTTCCHHHHHHHHHHHHHHTT
T ss_pred             cChhHeEEeeEEEeCCCcEEEEEEEecCCC-------------------CCceEEEEecCCCCCHHHHHHHHHHHHHHHh
Confidence            457899999999999999999999876554                   2335888887654 34455778999999999


Q ss_pred             CCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCC
Q 024842          102 FSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPP  181 (262)
Q Consensus       102 l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~  181 (262)
                      ++||||+++++++          ......+++|||+.+++|.+++..   ....+++..++.++.|++.||.|||+.+  
T Consensus       107 l~h~~iv~~~~~~----------~~~~~~~lv~e~~~~~~L~~~l~~---~~~~~~~~~~~~i~~qi~~~L~~LH~~~--  171 (325)
T 3kul_A          107 FDHPNIIRLEGVV----------TRGRLAMIVTEYMENGSLDTFLRT---HDGQFTIMQLVGMLRGVGAGMRYLSDLG--  171 (325)
T ss_dssp             CCCTTBCCEEEEE----------CGGGCCEEEEECCTTCBHHHHHHT---TTTCSCHHHHHHHHHHHHHHHHHHHHTT--
T ss_pred             CCCCCCCcEEEEE----------EeCCccEEEeeCCCCCcHHHHHHh---cccCCCHHHHHHHHHHHHHHHHHHHHCC--
Confidence            9999999999987          446778999999999999998852   3356999999999999999999999999  


Q ss_pred             eeecCCCCCcEEEecCCCCCCceEEeeccceeeccccCc--------cCcccCCcccchhhhhhhhhhhhhcCcccchhe
Q 024842          182 YAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKFA--------LGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQI  253 (262)
Q Consensus       182 ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~~--------~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~  253 (262)
                      |+||||||+|||++.++    .+||+|||++........        .++..|.+||.+....     .....|||++|+
T Consensus       172 ivH~Dlkp~NIll~~~~----~~kl~Dfg~a~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~-----~~~~~Di~slG~  242 (325)
T 3kul_A          172 YVHRDLAARNVLVDSNL----VCKVSDFGLSRVLEDDPDAAYTTTGGKIPIRWTAPEAIAFRT-----FSSASDVWSFGV  242 (325)
T ss_dssp             EECSCCSGGGEEECTTC----CEEECCCSSCEECC----CCEECC---CCGGGSCHHHHHHCE-----ECHHHHHHHHHH
T ss_pred             eeCCCCCcceEEECCCC----CEEECCCCcccccccCccceeeccCCCCcccccCHhHhcCCC-----CCcHHHHHHHHH
Confidence            99999999999998766    699999999987654321        2334577776442211     111346666666


Q ss_pred             eheeccc
Q 024842          254 LMRELMF  260 (262)
Q Consensus       254 ~~~~l~~  260 (262)
                      ++|+|++
T Consensus       243 il~ell~  249 (325)
T 3kul_A          243 VMWEVLA  249 (325)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHc
Confidence            6666665

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*

Probab=100.00  E-value=2.2e-35  Score=244.36  Aligned_cols=192  Identities=24%  Similarity=0.365  Sum_probs=153.2

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc-hHHHHHHHHHHHHhhhCC
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN-NEQLEMVREEIRVSSLFS  103 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~-~~~~~~~~~E~~~l~~l~  103 (262)
                      .++|++.+.||+|+||.||+|++..+++                      .||+|++.... ....+.+.+|+.+++.++
T Consensus         6 ~~~y~i~~~lG~G~~g~V~~~~~~~~~~----------------------~vavK~~~~~~~~~~~~~~~~E~~~l~~l~   63 (323)
T 3tki_A            6 VEDWDLVQTLGEGAYGEVQLAVNRVTEE----------------------AVAVKIVDMKRAVDCPENIKKEICINKMLN   63 (323)
T ss_dssp             TTCEEEEEEEEEETTEEEEEEEETTTCC----------------------EEEEEEEECC-------CHHHHHHHHHHCC
T ss_pred             hhhceeeeEEecCCCEEEEEEEECCCCc----------------------EEEEEEEEcccccchHHHHHHHHHHHHhCC
Confidence            4689999999999999999999887655                      57777664432 222456789999999999


Q ss_pred             CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCee
Q 024842          104 HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYA  183 (262)
Q Consensus       104 h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~iv  183 (262)
                      ||||+++++++          ......+++|||+.+++|.+++.    ....+++..++.++.|++.||.|||+.+  |+
T Consensus        64 hpnIv~~~~~~----------~~~~~~~lv~e~~~~~~L~~~l~----~~~~~~~~~~~~i~~qi~~aL~~LH~~g--iv  127 (323)
T 3tki_A           64 HENVVKFYGHR----------REGNIQYLFLEYCSGGELFDRIE----PDIGMPEPDAQRFFHQLMAGVVYLHGIG--IT  127 (323)
T ss_dssp             CTTBCCEEEEE----------ECSSEEEEEEECCTTEEGGGGSB----TTTBCCHHHHHHHHHHHHHHHHHHHHTT--EE
T ss_pred             CCCCCeEEEEE----------ecCCeEEEEEEcCCCCcHHHHHh----hcCCCCHHHHHHHHHHHHHHHHHHHHCC--cc
Confidence            99999999987          34667899999999999999875    4556999999999999999999999999  99


Q ss_pred             ecCCCCCcEEEecCCCCCCceEEeeccceeecccc-------CccCcccCCcccchhhhhhhhhhhhhcCcccchheehe
Q 024842          184 HNDVKPGNILITCRKGQPPLAILMDFGSARPAQSK-------FALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMR  256 (262)
Q Consensus       184 H~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~-------~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~  256 (262)
                      ||||||+|||++.++    .+||+|||++......       ...+++.|.+||.+......    ....|+|++|+++|
T Consensus       128 H~Dlkp~NIll~~~~----~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~----~~~~DiwslG~il~  199 (323)
T 3tki_A          128 HRDIKPENLLLDERD----NLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFH----AEPVDVWSCGIVLT  199 (323)
T ss_dssp             CSCCSGGGEEECTTC----CEEECCCTTCEECEETTEECCBCSCCSCGGGSCHHHHHCSSBC----HHHHHHHHHHHHHH
T ss_pred             ccccchHHEEEeCCC----CEEEEEeeccceeccCCcccccCCCccCcCccCcHHhccCCCC----CCcccHHHHHHHHH
Confidence            999999999998776    6999999999865322       23567778888765432211    11368888888888


Q ss_pred             ecccCC
Q 024842          257 ELMFGR  262 (262)
Q Consensus       257 ~l~~G~  262 (262)
                      +|++|+
T Consensus       200 ~ll~g~  205 (323)
T 3tki_A          200 AMLAGE  205 (323)
T ss_dssp             HHHHSS
T ss_pred             HHHhCC
Confidence            888875

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.5e-35  Score=244.87  Aligned_cols=191  Identities=23%  Similarity=0.288  Sum_probs=154.0

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc---hHHHHHHHHHHHHhhh
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN---NEQLEMVREEIRVSSL  101 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~---~~~~~~~~~E~~~l~~  101 (262)
                      .++|++.+.||+|+||.||+|++..+++                      .||+|++....   ......+.+|+.+++.
T Consensus         8 i~~Y~i~~~lG~G~~g~V~~a~~~~~~~----------------------~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~   65 (336)
T 3h4j_B            8 IGPYIIRETLGEGSFGKVKLATHYKTQQ----------------------KVALKFISRQLLKKSDMHMRVEREISYLKL   65 (336)
T ss_dssp             ETTEEEEEEEEEETTEEEEEEEETTTCC----------------------EEEEEEEEHHHHHHTTCSHHHHHHHHHHTT
T ss_pred             cCCEEEEEEEecCCCeEEEEEEECCCCC----------------------EEEEEEEehHHccchhHHHHHHHHHHHHHh
Confidence            3589999999999999999999987655                      57777654321   1223568899999999


Q ss_pred             CCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCC
Q 024842          102 FSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPP  181 (262)
Q Consensus       102 l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~  181 (262)
                      ++||||+++++++          ......+++|||+ +++|.+++.    ....+++..++.++.|++.||.|||+.+  
T Consensus        66 l~hpnIv~l~~~~----------~~~~~~~lv~E~~-~g~l~~~l~----~~~~l~~~~~~~i~~qi~~aL~~LH~~g--  128 (336)
T 3h4j_B           66 LRHPHIIKLYDVI----------TTPTDIVMVIEYA-GGELFDYIV----EKKRMTEDEGRRFFQQIICAIEYCHRHK--  128 (336)
T ss_dssp             CCCTTBCCEEEEE----------ECSSEEEEEECCC-CEEHHHHHH----HHCSCCHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred             CCCCCCCeEEEEE----------EeCCEEEEEEECC-CCcHHHHHH----HcCCCCHHHHHHHHHHHHHHHHHHHHCC--
Confidence            9999999999987          3356789999998 789988876    3455999999999999999999999999  


Q ss_pred             eeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC----ccCcccCCcccchhhhhhhhhhhhhcCcccchheehee
Q 024842          182 YAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRE  257 (262)
Q Consensus       182 ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~  257 (262)
                      |+||||||+|||++.++    .+||+|||++.......    ..+++.|.+||.+..-.+..    ...|+||+|+++|+
T Consensus       129 ivH~Dlkp~NIll~~~~----~~kl~DFG~s~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~----~~~DiwslG~il~~  200 (336)
T 3h4j_B          129 IVHRDLKPENLLLDDNL----NVKIADFGLSNIMTDGNFLKTSCGSPNYAAPEVINGKLYAG----PEVDVWSCGIVLYV  200 (336)
T ss_dssp             CCCCCCSTTTEEECTTC----CEEECCSSCTBTTTTSBTTCCCTTSTTTSCGGGSCCSGGGC----HHHHHHHHHHHHHH
T ss_pred             eEecCCchhhEEEcCCC----CEEEEEeccceeccCCcccccccCCcCcCCHHHHcCCCCCC----CccchhHHHHHHHH
Confidence            99999999999998776    69999999998665432    35778888888764332211    23688899998888


Q ss_pred             cccCC
Q 024842          258 LMFGR  262 (262)
Q Consensus       258 l~~G~  262 (262)
                      |++|+
T Consensus       201 ll~g~  205 (336)
T 3h4j_B          201 MLVGR  205 (336)
T ss_dssp             HHHSS
T ss_pred             HHhCC
Confidence            88885

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B

Probab=100.00  E-value=6e-35  Score=245.24  Aligned_cols=194  Identities=22%  Similarity=0.328  Sum_probs=156.4

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc--chHHHHHHHHHHHHhhhC
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ--NNEQLEMVREEIRVSSLF  102 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~--~~~~~~~~~~E~~~l~~l  102 (262)
                      .++|++.+.||+|+||.||+|.+..+++                      .+|+|.+...  .....+.+.+|+.+++.+
T Consensus        28 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~----------------------~~avK~~~~~~~~~~~~~~~~~E~~il~~l   85 (362)
T 2bdw_A           28 SDNYDVKEELGKGAFSVVRRCVHKTTGL----------------------EFAAKIINTKKLSARDFQKLEREARICRKL   85 (362)
T ss_dssp             HHHEEEEEEEEEETTEEEEEEEETTTCC----------------------EEEEEEEETTTCCHHHHHHHHHHHHHHHHC
T ss_pred             ccCeEEeeEEecCCCeEEEEEEECCCCC----------------------EEEEEEEEcccCCHHHHHHHHHHHHHHHhC
Confidence            3589999999999999999999887655                      5777766543  334457788999999999


Q ss_pred             CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCe
Q 024842          103 SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPY  182 (262)
Q Consensus       103 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~i  182 (262)
                      +||||+++++++          ......|++||++.+++|.+.+.    ....+++..++.++.|++.||.|||+++  |
T Consensus        86 ~hpnIv~~~~~~----------~~~~~~~lv~e~~~gg~L~~~l~----~~~~~~~~~~~~~~~qi~~al~~lH~~~--i  149 (362)
T 2bdw_A           86 QHPNIVRLHDSI----------QEESFHYLVFDLVTGGELFEDIV----AREFYSEADASHCIQQILESIAYCHSNG--I  149 (362)
T ss_dssp             CCTTBCCEEEEE----------ECSSEEEEEECCCCSCBHHHHHT----TCSCCCHHHHHHHHHHHHHHHHHHHHTT--C
T ss_pred             CCCCCCeEEEEE----------EeCCEEEEEEecCCCCCHHHHHH----HcCCCCHHHHHHHHHHHHHHHHHHHHCC--e
Confidence            999999999987          34677899999999999998875    4566999999999999999999999999  9


Q ss_pred             eecCCCCCcEEEecCCCCCCceEEeeccceeeccccC----ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheec
Q 024842          183 AHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMREL  258 (262)
Q Consensus       183 vH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l  258 (262)
                      +||||||+|||++.++. ...+||+|||++.......    ..+++.|.+||.+..-.+     ....|+||+|+++|+|
T Consensus       150 vH~Dlkp~NIll~~~~~-~~~~kl~DfG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-----~~~~DiwslG~il~~l  223 (362)
T 2bdw_A          150 VHRNLKPENLLLASKAK-GAAVKLADFGLAIEVNDSEAWHGFAGTPGYLSPEVLKKDPY-----SKPVDIWACGVILYIL  223 (362)
T ss_dssp             BCCCCSGGGEEESCSST-TCCEEECCCTTCBCCTTCCSCCCSCSCTTTCCHHHHTTCCC-----CTHHHHHHHHHHHHHH
T ss_pred             EeccCchHHEEEecCCC-CCCEEEeecCcceEecCCcccccCCCCccccCHHHHccCCC-----CchhhHHHHHHHHHHH
Confidence            99999999999986542 2259999999998765433    357778888876543221     1235788888888888


Q ss_pred             ccCC
Q 024842          259 MFGR  262 (262)
Q Consensus       259 ~~G~  262 (262)
                      ++|+
T Consensus       224 l~g~  227 (362)
T 2bdw_A          224 LVGY  227 (362)
T ss_dssp             HHSS
T ss_pred             HHCC
Confidence            8774

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*

Probab=100.00  E-value=3.4e-35  Score=245.71  Aligned_cols=194  Identities=20%  Similarity=0.234  Sum_probs=153.7

Q ss_pred             eecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc---chHHHHHHHHHHHH
Q 024842           22 WINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ---NNEQLEMVREEIRV   98 (262)
Q Consensus        22 ~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~---~~~~~~~~~~E~~~   98 (262)
                      .+..++|++.+.||+|+||.||+|++..+++                      .||+|++...   .....+.+..|..+
T Consensus        16 ~~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~----------------------~~AiK~~~~~~~~~~~~~~~~~~E~~~   73 (353)
T 2i0e_A           16 RMKLTDFNFLMVLGKGSFGKVMLSERKGTDE----------------------LYAVKILKKDVVIQDDDVECTMVEKRV   73 (353)
T ss_dssp             ---CTTEEEEEEEEEETTEEEEEEEETTEEE----------------------EEEEEEEEHHHHHHTTCHHHHHHHHHH
T ss_pred             CCchHHcEEEEEEeeCCCEEEEEEEECCCCC----------------------EEEEEEEEHHHhhcchHHHHHHHHHHH
Confidence            3457899999999999999999999987655                      5777766433   12234567789999


Q ss_pred             hhhC-CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHc
Q 024842           99 SSLF-SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHS  177 (262)
Q Consensus        99 l~~l-~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~  177 (262)
                      ++.+ +||+|+++++++          ......|++|||+.+++|.+++.    ....+++..++.++.|++.||.|||+
T Consensus        74 l~~~~~hp~iv~l~~~~----------~~~~~~~lv~E~~~gg~L~~~l~----~~~~~~~~~~~~~~~qi~~aL~~LH~  139 (353)
T 2i0e_A           74 LALPGKPPFLTQLHSCF----------QTMDRLYFVMEYVNGGDLMYHIQ----QVGRFKEPHAVFYAAEIAIGLFFLQS  139 (353)
T ss_dssp             HTCTTCCTTBCCEEEEE----------ECSSEEEEEEECCCSCBHHHHHH----HHSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhcCCCCEEeeEEEEE----------EcCCEEEEEEeCCCCCcHHHHHH----hcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            9887 799999999987          34678999999999999999886    33459999999999999999999999


Q ss_pred             CCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccc-----cCccCcccCCcccchhhhhhhhhhhhhcCcccchh
Q 024842          178 LEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQS-----KFALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQ  252 (262)
Q Consensus       178 ~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~-----~~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g  252 (262)
                      ++  |+||||||+|||++.++    .+||+|||++.....     ....+++.|.+||.+..-++     ....|+|++|
T Consensus       140 ~g--ivHrDlkp~NIll~~~g----~vkL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-----~~~~DiwslG  208 (353)
T 2i0e_A          140 KG--IIYRDLKLDNVMLDSEG----HIKIADFGMCKENIWDGVTTKTFCGTPDYIAPEIIAYQPY-----GKSVDWWAFG  208 (353)
T ss_dssp             TT--CBCCCCCGGGEEECTTS----CEEECCCTTCBCCCCTTCCBCCCCSCGGGCCHHHHTTCCB-----STHHHHHHHH
T ss_pred             CC--EEeccCCHHHEEEcCCC----cEEEEeCCcccccccCCcccccccCCccccChhhhcCCCc-----CCcccccchH
Confidence            99  99999999999998777    699999999986422     22357788888886543322     1235788888


Q ss_pred             eeheecccCC
Q 024842          253 ILMRELMFGR  262 (262)
Q Consensus       253 ~~~~~l~~G~  262 (262)
                      +++|||++|+
T Consensus       209 ~il~ell~G~  218 (353)
T 2i0e_A          209 VLLYEMLAGQ  218 (353)
T ss_dssp             HHHHHHHHSS
T ss_pred             HHHHHHHcCC
Confidence            8888888774

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}

Probab=100.00  E-value=6.9e-35  Score=241.63  Aligned_cols=195  Identities=25%  Similarity=0.321  Sum_probs=154.7

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccch------HHHHHHHHHHHH
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNN------EQLEMVREEIRV   98 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~------~~~~~~~~E~~~   98 (262)
                      .++|++.+.||+|+||.||+|++..+++                      .+|+|.+.....      ...+.+.+|+.+
T Consensus        10 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~----------------------~~avK~~~~~~~~~~~~~~~~~~~~~E~~~   67 (326)
T 2y0a_A           10 DDYYDTGEELGSGQFAVVKKCREKSTGL----------------------QYAAKFIKKRRTKSSRRGVSREDIEREVSI   67 (326)
T ss_dssp             HHHEEEEEEEECCSSEEEEEEEETTTCC----------------------EEEEEEEEBCCSTTCSSSBCHHHHHHHHHH
T ss_pred             ccceEeceEEeeCCCeEEEEEEECCCCc----------------------EEEEEEEEccccccccchhhHHHHHHHHHH
Confidence            4679999999999999999999987665                      566665543321      124678899999


Q ss_pred             hhhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcC
Q 024842           99 SSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSL  178 (262)
Q Consensus        99 l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~  178 (262)
                      ++.++||||+++++++          ......+++||++.+++|.+++.    ....+++..++.++.|++.||.|||+.
T Consensus        68 l~~l~hp~iv~~~~~~----------~~~~~~~lv~e~~~~~~L~~~l~----~~~~~~~~~~~~i~~qi~~al~~lH~~  133 (326)
T 2y0a_A           68 LKEIQHPNVITLHEVY----------ENKTDVILILELVAGGELFDFLA----EKESLTEEEATEFLKQILNGVYYLHSL  133 (326)
T ss_dssp             HHHCCCTTBCCEEEEE----------ECSSEEEEEEECCCSCBHHHHHT----TSSCCBHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHhCCCCCCCcEEEEE----------EeCCEEEEEEEcCCCCCHHHHHH----hcCCcCHHHHHHHHHHHHHHHHHHHHC
Confidence            9999999999999987          33667999999999999999885    456699999999999999999999999


Q ss_pred             CCCeeecCCCCCcEEEecCCCCCCceEEeeccceeecccc----CccCcccCCcccchhhhhhhhhhhhhcCcccchhee
Q 024842          179 EPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSK----FALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQIL  254 (262)
Q Consensus       179 ~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~----~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~  254 (262)
                      +  |+||||||+||+++.++.....+||+|||++......    ...+++.|.+||.+..-.     .....|+||+|++
T Consensus       134 ~--ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~-----~~~~~DiwslG~i  206 (326)
T 2y0a_A          134 Q--IAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNYEP-----LGLEADMWSIGVI  206 (326)
T ss_dssp             T--EECCCCCGGGEEESCSSSSSCCEEECCCTTCEECCTTSCCCCCCSCTTTCCHHHHTTCC-----CCTHHHHHHHHHH
T ss_pred             C--eEcCCCCHHHEEEecCCCCCCCEEEEECCCCeECCCCCccccccCCcCcCCceeecCCC-----CCcHHHHHHHHHH
Confidence            9  9999999999999876644446999999999876532    235677788877542221     1123577788877


Q ss_pred             heecccCC
Q 024842          255 MRELMFGR  262 (262)
Q Consensus       255 ~~~l~~G~  262 (262)
                      +|+|++|+
T Consensus       207 l~~ll~g~  214 (326)
T 2y0a_A          207 TYILLSGA  214 (326)
T ss_dssp             HHHHHHSC
T ss_pred             HHHHHHCc
Confidence            77777774

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=8.4e-35  Score=240.60  Aligned_cols=193  Identities=23%  Similarity=0.354  Sum_probs=153.7

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCCC
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSH  104 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~h  104 (262)
                      .++|++.+.||+|+||.||+|.+..+++                      .+++|.+.... .....+.+|+.+++.++|
T Consensus         4 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~----------------------~~a~K~~~~~~-~~~~~~~~E~~~l~~l~h   60 (321)
T 1tki_A            4 YEKYMIAEDLGRGEFGIVHRCVETSSKK----------------------TYMAKFVKVKG-TDQVLVKKEISILNIARH   60 (321)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTE----------------------EEEEEEECCCT-HHHHHHHHHHHHHHHSCC
T ss_pred             hhceEeeeEEecCCCeEEEEEEECCCCc----------------------EEEEEEEecCc-ccHHHHHHHHHHHHhCCC
Confidence            4789999999999999999999887655                      57777665443 334678899999999999


Q ss_pred             CCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeee
Q 024842          105 RNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAH  184 (262)
Q Consensus       105 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH  184 (262)
                      |||+++++++          ......+++|||+.+++|.+++.   .....+++..++.++.|++.||.|||+.+  |+|
T Consensus        61 pnIv~~~~~~----------~~~~~~~lv~e~~~g~~L~~~l~---~~~~~~~~~~~~~i~~qi~~al~~lH~~g--ivH  125 (321)
T 1tki_A           61 RNILHLHESF----------ESMEELVMIFEFISGLDIFERIN---TSAFELNEREIVSYVHQVCEALQFLHSHN--IGH  125 (321)
T ss_dssp             TTBCCEEEEE----------EETTEEEEEECCCCCCBHHHHHT---SSSCCCCHHHHHHHHHHHHHHHHHHHHTT--EEC
T ss_pred             CCCCeEeEEE----------ecCCEEEEEEEeCCCCCHHHHHH---hcCCCCCHHHHHHHHHHHHHHHHHHHHCC--CCc
Confidence            9999999987          33667999999999999999875   23346999999999999999999999999  999


Q ss_pred             cCCCCCcEEEecCCCCCCceEEeeccceeeccccC----ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheeccc
Q 024842          185 NDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMF  260 (262)
Q Consensus       185 ~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~  260 (262)
                      |||||+|||++.+.  ...+||+|||++.......    ..+++.|.+||.+..-.     .....|+||+|+++|+|++
T Consensus       126 ~Dlkp~NIl~~~~~--~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~-----~~~~~DiwslG~il~~ll~  198 (321)
T 1tki_A          126 FDIRPENIIYQTRR--SSTIKIIEFGQARQLKPGDNFRLLFTAPEYYAPEVHQHDV-----VSTATDMWSLGTLVYVLLS  198 (321)
T ss_dssp             CCCCGGGEEESSSS--CCCEEECCCTTCEECCTTCEEEEEESCGGGSCHHHHTTCE-----ECHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHEEEccCC--CCCEEEEECCCCeECCCCCccccccCChhhcCcHHhcCCC-----CCchhhHHHHHHHHHHHHh
Confidence            99999999998632  1269999999998765433    24677777777553221     1123578888888888877


Q ss_pred             CC
Q 024842          261 GR  262 (262)
Q Consensus       261 G~  262 (262)
                      |+
T Consensus       199 g~  200 (321)
T 1tki_A          199 GI  200 (321)
T ss_dssp             SS
T ss_pred             CC
Confidence            74

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*

Probab=100.00  E-value=3.2e-35  Score=239.40  Aligned_cols=205  Identities=18%  Similarity=0.140  Sum_probs=158.8

Q ss_pred             ecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhC
Q 024842           23 INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLF  102 (262)
Q Consensus        23 ~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l  102 (262)
                      +..++|++.+.||+|+||.||+|++..+++....+               ...+++|.+........+.+.+|+.+++.+
T Consensus         5 i~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~---------------~~~va~K~~~~~~~~~~~~~~~E~~~l~~l   69 (289)
T 4fvq_A            5 IRNEDLIFNESLGQGTFTKIFKGVRREVGDYGQLH---------------ETEVLLKVLDKAHRNYSESFFEAASMMSKL   69 (289)
T ss_dssp             CCGGGEEEEEEEEEETTEEEEEEEEEEECGGGCEE---------------EEEEEEEEECGGGGGGHHHHHHHHHHHHTS
T ss_pred             echhHeeeeeeeccCCCceEEEEEEeccccccccc---------------chhhhhhhcccccHHHHHHHHHHHHHHHhC
Confidence            45789999999999999999999998776532221               236888887666666668899999999999


Q ss_pred             CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCe
Q 024842          103 SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPY  182 (262)
Q Consensus       103 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~i  182 (262)
                      +||||+++++++          ......+++||++.+++|.+++..   ....+++..++.++.|++.||.|||+++  +
T Consensus        70 ~h~~iv~~~~~~----------~~~~~~~lv~e~~~~~~L~~~l~~---~~~~~~~~~~~~i~~qi~~~L~~LH~~~--i  134 (289)
T 4fvq_A           70 SHKHLVLNYGVC----------VCGDENILVQEFVKFGSLDTYLKK---NKNCINILWKLEVAKQLAAAMHFLEENT--L  134 (289)
T ss_dssp             CCTTBCCEEEEE----------CCTTCCEEEEECCTTCBHHHHHHH---TGGGCCHHHHHHHHHHHHHHHHHHHHTT--C
T ss_pred             CCCCEeEEEEEE----------EeCCCCEEEEECCCCCCHHHHHHh---CCCCCCHHHHHHHHHHHHHHHHHHhhCC--e
Confidence            999999999987          335678999999999999998863   2334899999999999999999999999  9


Q ss_pred             eecCCCCCcEEEecCCC----CCCceEEeeccceeeccccC-ccCcccCCcccchhhhhhhhhhhhhcCcccchheehee
Q 024842          183 AHNDVKPGNILITCRKG----QPPLAILMDFGSARPAQSKF-ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRE  257 (262)
Q Consensus       183 vH~dikp~Nill~~~~~----~~~~~kl~Dfg~a~~~~~~~-~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~  257 (262)
                      +||||||+|||++.++.    ....+||+|||++....... ..++..|.+||.+....    ......||||+|+++|+
T Consensus       135 vH~Dlkp~NIll~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~y~aPE~~~~~~----~~~~~~DiwslG~il~e  210 (289)
T 4fvq_A          135 IHGNVCAKNILLIREEDRKTGNPPFIKLSDPGISITVLPKDILQERIPWVPPECIENPK----NLNLATDKWSFGTTLWE  210 (289)
T ss_dssp             CCCCCCGGGEEEEECCBGGGTBCCEEEECCCCSCTTTSCHHHHHHTTTTSCHHHHHCGG----GCCHHHHHHHHHHHHHH
T ss_pred             ECCCcCcceEEEecCCcccccccceeeeccCcccccccCccccCCcCcccCHHHhCCCC----CCCchhHHHHHHHHHHH
Confidence            99999999999987762    11239999999997654332 23556677777553211    11123577777777777


Q ss_pred             cccC
Q 024842          258 LMFG  261 (262)
Q Consensus       258 l~~G  261 (262)
                      |++|
T Consensus       211 l~~g  214 (289)
T 4fvq_A          211 ICSG  214 (289)
T ss_dssp             HHTT
T ss_pred             HHcC
Confidence            7775

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*

Probab=100.00  E-value=3.7e-35  Score=244.71  Aligned_cols=194  Identities=22%  Similarity=0.271  Sum_probs=152.8

Q ss_pred             eecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc---hHHHHHHHHHHHH
Q 024842           22 WINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN---NEQLEMVREEIRV   98 (262)
Q Consensus        22 ~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~---~~~~~~~~~E~~~   98 (262)
                      .+..++|++.+.||+|+||.||+|++..+++                      .||+|.+....   ....+.+..|..+
T Consensus        13 ~~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~----------------------~vaiK~~~~~~~~~~~~~~~~~~E~~i   70 (345)
T 1xjd_A           13 KLKIEDFILHKMLGKGSFGKVFLAEFKKTNQ----------------------FFAIKALKKDVVLMDDDVECTMVEKRV   70 (345)
T ss_dssp             ---CTTEEEEEEEEECSSSEEEEEEETTTTE----------------------EEEEEEEEHHHHHHTTCHHHHHHHHHH
T ss_pred             CCChHHeEEEEEEeeCCCeEEEEEEECCCCC----------------------EEEEEEEEhHHhhhhhhHHHHHHHHHH
Confidence            3557899999999999999999999987655                      57777664331   2224566778888


Q ss_pred             hhhC-CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHc
Q 024842           99 SSLF-SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHS  177 (262)
Q Consensus        99 l~~l-~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~  177 (262)
                      ++.+ +||||+++++++          ......|++|||+.+++|.+++.    ....+++..++.++.|++.||+|||+
T Consensus        71 l~~~~~hp~iv~l~~~~----------~~~~~~~lv~E~~~gg~L~~~l~----~~~~~~~~~~~~~~~qi~~aL~~LH~  136 (345)
T 1xjd_A           71 LSLAWEHPFLTHMFCTF----------QTKENLFFVMEYLNGGDLMYHIQ----SCHKFDLSRATFYAAEIILGLQFLHS  136 (345)
T ss_dssp             HHHHTTCTTBCCEEEEE----------ECSSEEEEEEECCTTCBHHHHHH----HHSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhcCCCCCCCcEEEEE----------EeCCEEEEEEeCCCCCcHHHHHH----HcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            8766 899999999988          34677999999999999999886    33459999999999999999999999


Q ss_pred             CCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccc-----cCccCcccCCcccchhhhhhhhhhhhhcCcccchh
Q 024842          178 LEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQS-----KFALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQ  252 (262)
Q Consensus       178 ~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~-----~~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g  252 (262)
                      ++  |+||||||+|||++.++    .+||+|||++.....     ....+++.|.+||-+..-++     ....|+||+|
T Consensus       137 ~~--ivHrDlkp~NIll~~~g----~vkL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-----~~~~DiwslG  205 (345)
T 1xjd_A          137 KG--IVYRDLKLDNILLDKDG----HIKIADFGMCKENMLGDAKTNTFCGTPDYIAPEILLGQKY-----NHSVDWWSFG  205 (345)
T ss_dssp             TT--CBCCCCCGGGEEECTTS----CEEECCCTTCBCCCCTTCCBCCCCSCGGGCCHHHHTTCCB-----CTHHHHHHHH
T ss_pred             CC--eEeCCCChhhEEECCCC----CEEEeEChhhhhcccCCCcccCCCCCcccCChhhhcCCCC-----CChhhhHHHH
Confidence            99  99999999999998777    699999999986432     22357778888876543322     1235788888


Q ss_pred             eeheecccCC
Q 024842          253 ILMRELMFGR  262 (262)
Q Consensus       253 ~~~~~l~~G~  262 (262)
                      +++|||++|+
T Consensus       206 ~il~ell~g~  215 (345)
T 1xjd_A          206 VLLYEMLIGQ  215 (345)
T ss_dssp             HHHHHHHHSS
T ss_pred             HHHHHHhcCC
Confidence            8888888774

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*

Probab=100.00  E-value=4.7e-35  Score=242.76  Aligned_cols=199  Identities=20%  Similarity=0.291  Sum_probs=146.9

Q ss_pred             ceeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc----chHHHHHHHHH
Q 024842           20 DVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ----NNEQLEMVREE   95 (262)
Q Consensus        20 ~~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~----~~~~~~~~~~E   95 (262)
                      ...+..++|++.+.||+|+||.||+|++.....                   .++.+|+|++...    .......+.+|
T Consensus        11 ~~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~-------------------~~~~~aiK~~~~~~~~~~~~~~~~~~~E   71 (327)
T 3a62_A           11 PEKIRPECFELLRVLGKGGYGKVFQVRKVTGAN-------------------TGKIFAMKVLKKAMIVRNAKDTAHTKAE   71 (327)
T ss_dssp             --CCCGGGEEEEEEEEEETTEEEEEEEECSSTT-------------------TTCEEEEEEECCC--------------H
T ss_pred             CCCCCHHHeEEEEEEEeCCCEEEEEEEEeccCC-------------------CCcEEEEEEEEHHHhhhhhhHHHHHHHH
Confidence            344567899999999999999999999853211                   2346788876543    22334567889


Q ss_pred             HHHhhhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHH
Q 024842           96 IRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHM  175 (262)
Q Consensus        96 ~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~l  175 (262)
                      +.+++.++||||+++++++          ......|++|||+.+++|.+++.    ....+++..++.++.|++.||.||
T Consensus        72 ~~~l~~l~hp~iv~~~~~~----------~~~~~~~lv~e~~~~~~L~~~l~----~~~~~~~~~~~~~~~qi~~al~~l  137 (327)
T 3a62_A           72 RNILEEVKHPFIVDLIYAF----------QTGGKLYLILEYLSGGELFMQLE----REGIFMEDTACFYLAEISMALGHL  137 (327)
T ss_dssp             HHHHHHCCCTTBCCEEEEE----------ECSSCEEEEEECCTTEEHHHHHH----HHSSCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCCccceeEEE----------EcCCEEEEEEeCCCCCcHHHHHH----hCCCCCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999987          33667999999999999999886    345589999999999999999999


Q ss_pred             HcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeecccc-----CccCcccCCcccchhhhhhhhhhhhhcCcccc
Q 024842          176 HSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSK-----FALGQRRYSCRNGLLSIVLHLSELLSCGTVRV  250 (262)
Q Consensus       176 H~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~-----~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~  250 (262)
                      |+++  |+||||||+|||++.++    .+||+|||++......     ...+++.|.+||.+..-.+     ....|+|+
T Consensus       138 H~~~--ivH~Dlkp~Nill~~~~----~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-----~~~~Diws  206 (327)
T 3a62_A          138 HQKG--IIYRDLKPENIMLNHQG----HVKLTDFGLCKESIHDGTVTHTFCGTIEYMAPEILMRSGH-----NRAVDWWS  206 (327)
T ss_dssp             HHTT--CCCCCCCTTTEEECTTS----CEEECCCSCC----------CTTSSCCTTSCHHHHTTSCC-----CTHHHHHH
T ss_pred             HhCC--EEcccCCHHHeEECCCC----cEEEEeCCcccccccCCccccccCCCcCccCHhhCcCCCC-----CCcccchh
Confidence            9999  99999999999998776    6999999998754322     2356778888875533221     12357777


Q ss_pred             hheeheecccCC
Q 024842          251 IQILMRELMFGR  262 (262)
Q Consensus       251 ~g~~~~~l~~G~  262 (262)
                      +|+++|+|++|+
T Consensus       207 lG~il~el~~g~  218 (327)
T 3a62_A          207 LGALMYDMLTGA  218 (327)
T ss_dssp             HHHHHHHHHHSS
T ss_pred             HHHHHHHHHHCC
Confidence            777777777774

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}

Probab=100.00  E-value=7.3e-35  Score=250.47  Aligned_cols=194  Identities=22%  Similarity=0.363  Sum_probs=154.0

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc--hHHHHHHHHHHHHhhhC
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN--NEQLEMVREEIRVSSLF  102 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~--~~~~~~~~~E~~~l~~l  102 (262)
                      .++|++.+.||+|+||.||+|.+..+++                      .+|+|++....  ....+.+.+|+.+++.+
T Consensus        10 ~~~Y~i~~~LG~G~fg~V~~~~~~~~~~----------------------~~a~K~i~~~~~~~~~~~~~~~E~~il~~l   67 (444)
T 3soa_A           10 TEEYQLFEELGKGAFSVVRRCVKVLAGQ----------------------EYAAMIINTKKLSARDHQKLEREARICRLL   67 (444)
T ss_dssp             HHHEEEEEEEEEC--CEEEEEEETTTTE----------------------EEEEEEEESCSCHHHHHHHHHHHHHHHHHC
T ss_pred             cCCeEEEEEeccCCCeEEEEEEECCCCc----------------------EEEEEEEEcccCCHHHHHHHHHHHHHHHhC
Confidence            4689999999999999999999887765                      56777655432  33456788999999999


Q ss_pred             CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCe
Q 024842          103 SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPY  182 (262)
Q Consensus       103 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~i  182 (262)
                      +||||+++++++          ......|++||++.+++|.+.+.    ....+++..++.++.|++.||.|||+++  |
T Consensus        68 ~hpnIv~l~~~~----------~~~~~~~lv~E~~~gg~L~~~i~----~~~~~~e~~~~~i~~qil~aL~~lH~~g--i  131 (444)
T 3soa_A           68 KHPNIVRLHDSI----------SEEGHHYLIFDLVTGGELFEDIV----AREYYSEADASHCIQQILEAVLHCHQMG--V  131 (444)
T ss_dssp             CBTTBCCEEEEE----------ECSSEEEEEECCCBCCBHHHHHH----HCSCCCHHHHHHHHHHHHHHHHHHHHTT--C
T ss_pred             CCcCCCeEEEEE----------EECCEEEEEEEeCCCCCHHHHHH----HcCCCCHHHHHHHHHHHHHHHHHHHHCC--c
Confidence            999999999987          44678999999999999999886    4566999999999999999999999999  9


Q ss_pred             eecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-----ccCcccCCcccchhhhhhhhhhhhhcCcccchheehee
Q 024842          183 AHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRE  257 (262)
Q Consensus       183 vH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~  257 (262)
                      +||||||+|||++.+.. ...+||+|||++.......     ..+++.|.+||.+..-.+     ....||||+|+++|+
T Consensus       132 vHrDlKp~NIll~~~~~-~~~vkL~DFG~a~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~-----~~~~DIwSlGvilye  205 (444)
T 3soa_A          132 VHRNLKPENLLLASKLK-GAAVKLADFGLAIEVEGEQQAWFGFAGTPGYLSPEVLRKDPY-----GKPVDLWACGVILYI  205 (444)
T ss_dssp             BCCCCSSTTEEESBSST-TCCEEECCCSSCBCCCTTCCBCCCSCSCGGGCCHHHHTTCCB-----CTHHHHHHHHHHHHH
T ss_pred             cccCCCHHHEEEeccCC-CCcEEEccCceeEEecCCCceeecccCCcccCCHHHhcCCCC-----CCccccHHHHHHHHH
Confidence            99999999999985421 1269999999998765432     357778888875533221     123578888888888


Q ss_pred             cccCC
Q 024842          258 LMFGR  262 (262)
Q Consensus       258 l~~G~  262 (262)
                      |++|+
T Consensus       206 ll~G~  210 (444)
T 3soa_A          206 LLVGY  210 (444)
T ss_dssp             HHHSS
T ss_pred             HHhCC
Confidence            88774

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...

Probab=100.00  E-value=4.4e-35  Score=239.42  Aligned_cols=200  Identities=22%  Similarity=0.281  Sum_probs=154.5

Q ss_pred             eecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhh
Q 024842           22 WINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSL  101 (262)
Q Consensus        22 ~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~  101 (262)
                      .+..++|++.+.||+|+||.||+|+......                  ..+..||+|++........+.+.+|+.+++.
T Consensus         6 ~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~------------------~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~   67 (295)
T 3ugc_A            6 QFEERHLKFLQQLGKGNFGSVEMCRYDPLQD------------------NTGEVVAVKKLQHSTEEHLRDFEREIEILKS   67 (295)
T ss_dssp             CCCGGGEEEEEEEEECSSEEEEEEEECTTCS------------------SCCEEEEEEEESCCCHHHHHHHHHHHHHHHT
T ss_pred             cCCHHHhhhhheeeccCCEEEEEEEEecccC------------------CCCcEEEEEEcccCCHHHHHHHHHHHHHHHh
Confidence            3557899999999999999999998532111                  1345789998887777777889999999999


Q ss_pred             CCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCC
Q 024842          102 FSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPP  181 (262)
Q Consensus       102 l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~  181 (262)
                      ++||||+++++++..        ......+++||++.+++|.+++..   ....+++..++.++.|++.||.|||+.+  
T Consensus        68 l~h~~iv~~~~~~~~--------~~~~~~~lv~e~~~~~~L~~~l~~---~~~~~~~~~~~~~~~qi~~~l~~lH~~~--  134 (295)
T 3ugc_A           68 LQHDNIVKYKGVCYS--------AGRRNLKLIMEYLPYGSLRDYLQK---HKERIDHIKLLQYTSQICKGMEYLGTKR--  134 (295)
T ss_dssp             CCCTTBCCEEEEECH--------HHHTSCEEEEECCTTCBHHHHHHH---CGGGCCHHHHHHHHHHHHHHHHHHHHTT--
T ss_pred             CCCCCEeeEEEEEec--------CCCCceEEEEEeCCCCCHHHHHHh---cccccCHHHHHHHHHHHHHHHHHHhcCC--
Confidence            999999999988742        123458999999999999998863   2345999999999999999999999998  


Q ss_pred             eeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC--------ccCcccCCcccchhhhhhhhhhhhhcCcccchhe
Q 024842          182 YAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF--------ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQI  253 (262)
Q Consensus       182 ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~--------~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~  253 (262)
                      ++||||||+||+++.++    .+||+|||++.......        ..++..|.+||.+....     .....||||+|+
T Consensus       135 ivH~Dikp~Nil~~~~~----~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-----~~~~~Di~slG~  205 (295)
T 3ugc_A          135 YIHRDLATRNILVENEN----RVKIGDFGLTKVLPQDKEFFKVKEPGESPIFWYAPESLTESK-----FSVASDVWSFGV  205 (295)
T ss_dssp             CCCSCCSGGGEEEEETT----EEEECCCCSCC-------------CTTCGGGGCCHHHHHHCC-----CCHHHHHHHHHH
T ss_pred             cccCCCCHhhEEEcCCC----eEEEccCcccccccCCcceeeeccCCCCccceeCcHHhcCCC-----CChHHHHHHHHH
Confidence            99999999999998877    79999999998764332        12344477776543221     122357888888


Q ss_pred             eheecccC
Q 024842          254 LMRELMFG  261 (262)
Q Consensus       254 ~~~~l~~G  261 (262)
                      ++++|++|
T Consensus       206 ~l~~l~~g  213 (295)
T 3ugc_A          206 VLYELFTY  213 (295)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHhc
Confidence            88888776

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}

Probab=100.00  E-value=1e-34  Score=239.83  Aligned_cols=209  Identities=19%  Similarity=0.247  Sum_probs=156.9

Q ss_pred             eeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc-hHHHHHHHHHHHHh
Q 024842           21 VWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN-NEQLEMVREEIRVS   99 (262)
Q Consensus        21 ~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~-~~~~~~~~~E~~~l   99 (262)
                      ..+..++|++.+.||+|+||.||+|++..+++                      .||+|++.... ....+.+.+|+.++
T Consensus         4 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~----------------------~vavK~~~~~~~~~~~~~~~~E~~~l   61 (319)
T 4euu_A            4 QSTSNHLWLLSDILGQGATANVFRGRHKKTGD----------------------LFAIKVFNNISFLRPVDVQMREFEVL   61 (319)
T ss_dssp             EECSSEEEEEEEEEEECSSEEEEEEEETTTCC----------------------EEEEEEECGGGGGSCHHHHHHHHHHH
T ss_pred             ccCCCCCEEEEEEecCCCCeEEEEEEECCCCc----------------------EEEEEEeccccccchHHHHHHHHHHH
Confidence            34557899999999999999999999987655                      57777665432 22346678899999


Q ss_pred             hhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCC
Q 024842          100 SLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLE  179 (262)
Q Consensus       100 ~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~  179 (262)
                      +.++||||+++++++.        .......+++|||+.+++|.+++..... ...+++..++.++.|++.||.|||+++
T Consensus        62 ~~l~h~~iv~~~~~~~--------~~~~~~~~lv~e~~~~~~L~~~l~~~~~-~~~~~~~~~~~i~~qi~~~L~~LH~~~  132 (319)
T 4euu_A           62 KKLNHKNIVKLFAIEE--------ETTTRHKVLIMEFCPCGSLYTVLEEPSN-AYGLPESEFLIVLRDVVGGMNHLRENG  132 (319)
T ss_dssp             HHCCCTTBCCEEEEEE--------CTTTCCEEEEEECCTTCBHHHHHHSGGG-TTCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HhcCCCCcceEEEEee--------cCCCceEEEEEeCCCCCCHHHHHHHhcc-ccCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            9999999999998873        1334478999999999999998864322 233899999999999999999999999


Q ss_pred             CCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC----ccCcccCCcccchhhhhhh---hhhhhhcCcccchh
Q 024842          180 PPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF----ALGQRRYSCRNGLLSIVLH---LSELLSCGTVRVIQ  252 (262)
Q Consensus       180 ~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~~~~~~~~d~~s~g~~---~~e~~~~~~v~~~g  252 (262)
                        |+||||||+|||+..+.+....+||+|||++.......    ..++..|.+||.+......   ........|+||+|
T Consensus       133 --ivH~Dlkp~NIll~~~~~~~~~~kL~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwslG  210 (319)
T 4euu_A          133 --IVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELEDDEQFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIG  210 (319)
T ss_dssp             --EECSCCSGGGEEEEECTTSCEEEEECCCTTCEECCTTCCBCCCCSCGGGCCHHHHHHHTSCCCCCCCBCTTHHHHHHH
T ss_pred             --EecCCCCHHHEEEeccCCCCceEEEccCCCceecCCCCceeecccCCCccCHHHhhhccccccccCCCCcHHHHHHHH
Confidence              99999999999984333333379999999998765433    2466677777754321000   01112246788888


Q ss_pred             eeheecccCC
Q 024842          253 ILMRELMFGR  262 (262)
Q Consensus       253 ~~~~~l~~G~  262 (262)
                      +++|+|++|+
T Consensus       211 ~il~el~~g~  220 (319)
T 4euu_A          211 VTFYHAATGS  220 (319)
T ss_dssp             HHHHHHHHSS
T ss_pred             HHHHHHHhCC
Confidence            8888887774

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7

Probab=100.00  E-value=1.5e-34  Score=244.55  Aligned_cols=194  Identities=25%  Similarity=0.327  Sum_probs=157.0

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCCC
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSH  104 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~h  104 (262)
                      .++|++.+.||+|+||.||+|.+..+++                      .+|+|.+..........+.+|+.+++.++|
T Consensus        50 ~~~y~i~~~LG~G~~g~Vy~~~~~~~~~----------------------~~a~K~~~~~~~~~~~~~~~E~~il~~l~h  107 (387)
T 1kob_A           50 YDYYDILEELGSGAFGVVHRCVEKATGR----------------------VFVAKFINTPYPLDKYTVKNEISIMNQLHH  107 (387)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTCC----------------------EEEEEEEECCSHHHHHHHHHHHHHHTTCCS
T ss_pred             ccceEEEEEEecCCCEEEEEEEECCCCC----------------------EEEEEEecccchhhHHHHHHHHHHHHhCCC
Confidence            3689999999999999999999887654                      677887766555556778999999999999


Q ss_pred             CCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeee
Q 024842          105 RNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAH  184 (262)
Q Consensus       105 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH  184 (262)
                      |||+++++++          ......+++|||+.+++|.+++..   ....+++..++.++.|++.||.|||+++  |+|
T Consensus       108 pnIv~~~~~~----------~~~~~~~lv~E~~~gg~L~~~l~~---~~~~l~~~~~~~i~~qi~~aL~~LH~~g--ivH  172 (387)
T 1kob_A          108 PKLINLHDAF----------EDKYEMVLILEFLSGGELFDRIAA---EDYKMSEAEVINYMRQACEGLKHMHEHS--IVH  172 (387)
T ss_dssp             TTBCCEEEEE----------ECSSEEEEEEECCCCCBHHHHTTC---TTCCBCHHHHHHHHHHHHHHHHHHHHTT--EEC
T ss_pred             cCCCeEEEEE----------EeCCEEEEEEEcCCCCcHHHHHHh---hcCCCCHHHHHHHHHHHHHHHHHHHhCC--eee
Confidence            9999999987          346779999999999999987752   2346999999999999999999999999  999


Q ss_pred             cCCCCCcEEEecCCCCCCceEEeeccceeeccccC----ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheeccc
Q 024842          185 NDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMF  260 (262)
Q Consensus       185 ~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~  260 (262)
                      |||||+|||++.++.  ..+||+|||++.......    ..+++.|.+||.+....+     ....|+||+|+++|+|++
T Consensus       173 rDlkp~NIll~~~~~--~~vkL~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-----~~~~DiwSlG~il~ellt  245 (387)
T 1kob_A          173 LDIKPENIMCETKKA--SSVKIIDFGLATKLNPDEIVKVTTATAEFAAPEIVDREPV-----GFYTDMWAIGVLGYVLLS  245 (387)
T ss_dssp             CCCCGGGEEESSTTC--CCEEECCCTTCEECCTTSCEEEECSSGGGCCHHHHTTCCB-----CHHHHHHHHHHHHHHHHH
T ss_pred             cccchHHeEEecCCC--CceEEEecccceecCCCcceeeeccCCCccCchhccCCCC-----CCcccEeeHhHHHHHHHh
Confidence            999999999975321  259999999998775443    257778888875543221     123588888888888887


Q ss_pred             CC
Q 024842          261 GR  262 (262)
Q Consensus       261 G~  262 (262)
                      |+
T Consensus       246 g~  247 (387)
T 1kob_A          246 GL  247 (387)
T ss_dssp             SC
T ss_pred             CC
Confidence            74

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}

Probab=100.00  E-value=1.8e-34  Score=242.74  Aligned_cols=207  Identities=15%  Similarity=0.206  Sum_probs=155.3

Q ss_pred             CceeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHH
Q 024842           19 GDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRV   98 (262)
Q Consensus        19 ~~~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~   98 (262)
                      ....+..++|.+.+.||+|+||.||+|.+..+...                 ..++.||+|++.....   ..+..|+.+
T Consensus        58 ~~~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~-----------------~~~~~vavK~~~~~~~---~~~~~e~~~  117 (365)
T 3e7e_A           58 TEFQLGSKLVYVHHLLGEGAFAQVYEATQGDLNDA-----------------KNKQKFVLKVQKPANP---WEFYIGTQL  117 (365)
T ss_dssp             CEEECSSSEEEEEEEEEECSSEEEEEEEC------------------------CCCCEEEEEESSCCH---HHHHHHHHH
T ss_pred             eeEEECCEEEEEEEEeeccCCEEEEEEEecCCccc-----------------ccCcEEEEEEeCCCCh---hHHHHHHHH
Confidence            45566788999999999999999999964332111                 1345788888765543   345667777


Q ss_pred             hhhCC---CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhh-cCCCCCHHHHHHHHHHHHHHHHH
Q 024842           99 SSLFS---HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQT-KKEFFSTSDVLQIFYQICAGLKH  174 (262)
Q Consensus        99 l~~l~---h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~-~~~~~~~~~~~~i~~ql~~~l~~  174 (262)
                      ++.+.   |+|++++++.+.          ..+..+++|||+.+++|.+++..... ....+++..++.++.|++.||+|
T Consensus       118 ~~~l~~~~~~~iv~~~~~~~----------~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~L~~  187 (365)
T 3e7e_A          118 MERLKPSMQHMFMKFYSAHL----------FQNGSVLVGELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMRMLYMIEQ  187 (365)
T ss_dssp             HHHSCGGGGGGBCCEEEEEE----------CSSCEEEEECCCCSCBHHHHHHHHHTSTTCSCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhhhhhhhhhhheeee----------cCCCcEEEEeccCCCcHHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHH
Confidence            77665   999999999873          35678999999999999999875443 24569999999999999999999


Q ss_pred             HHcCCCCeeecCCCCCcEEEecC-------CCCCCceEEeeccceeeccc-------cCccCcccCCcccchhhhhhhhh
Q 024842          175 MHSLEPPYAHNDVKPGNILITCR-------KGQPPLAILMDFGSARPAQS-------KFALGQRRYSCRNGLLSIVLHLS  240 (262)
Q Consensus       175 lH~~~~~ivH~dikp~Nill~~~-------~~~~~~~kl~Dfg~a~~~~~-------~~~~~~~~~~~~~d~~s~g~~~~  240 (262)
                      ||+++  |+||||||+|||++.+       ......+||+|||+|.....       ....++..|.+||.+..-.    
T Consensus       188 lH~~~--ivHrDiKp~NIll~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~----  261 (365)
T 3e7e_A          188 VHDCE--IIHGDIKPDNFILGNGFLEQDDEDDLSAGLALIDLGQSIDMKLFPKGTIFTAKCETSGFQCVEMLSNKP----  261 (365)
T ss_dssp             HHTTT--EECCCCSGGGEEECGGGTCC------CTTEEECCCTTCEEGGGSCTTEEECCSSCTTSCCCHHHHTTCC----
T ss_pred             HhhCC--eecCCCCHHHEEecccccCccccccccCCEEEeeCchhhhhhccCCCceeeeecCCCCCCChHHhcCCC----
Confidence            99998  9999999999999871       01122799999999976531       1235788888888654332    


Q ss_pred             hhhhcCcccchheeheecccCC
Q 024842          241 ELLSCGTVRVIQILMRELMFGR  262 (262)
Q Consensus       241 e~~~~~~v~~~g~~~~~l~~G~  262 (262)
                       .....||||+|+++|||++|+
T Consensus       262 -~~~~~DiwslG~il~elltg~  282 (365)
T 3e7e_A          262 -WNYQIDYFGVAATVYCMLFGT  282 (365)
T ss_dssp             -BSTHHHHHHHHHHHHHHHHSS
T ss_pred             -CCccccHHHHHHHHHHHHhCC
Confidence             122468888888888888885

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}

Probab=100.00  E-value=8.9e-35  Score=239.87  Aligned_cols=210  Identities=31%  Similarity=0.505  Sum_probs=161.5

Q ss_pred             CCCceeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHH
Q 024842           17 GGGDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEI   96 (262)
Q Consensus        17 ~~~~~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~   96 (262)
                      .+..+.+..++|++.+.||+|+||.||+|++..+++                      .||+|++........+.+.+|+
T Consensus        20 ~g~~~~i~~~~y~~~~~lg~G~~g~V~~~~~~~~~~----------------------~vavK~~~~~~~~~~~~~~~E~   77 (317)
T 2buj_A           20 QGHMVIIDNKHYLFIQKLGEGGFSYVDLVEGLHDGH----------------------FYALKRILCHEQQDREEAQREA   77 (317)
T ss_dssp             EEEEEEETTEEEEEEEEEEC--CEEEEEEEETTTCC----------------------EEEEEEEEESSHHHHHHHHHHH
T ss_pred             cccEEEECCeEEEEEEEecCCCCeEEEEEEecCCCc----------------------EEEEEEEecCCHHHHHHHHHHH
Confidence            344556778999999999999999999999876544                      6888887766666778899999


Q ss_pred             HHhhhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHH
Q 024842           97 RVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMH  176 (262)
Q Consensus        97 ~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH  176 (262)
                      .+++.++||||+++++++..      ........+++||++.+++|.+++.........+++..++.++.|++.||.|||
T Consensus        78 ~~l~~l~h~~iv~~~~~~~~------~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH  151 (317)
T 2buj_A           78 DMHRLFNHPNILRLVAYCLR------ERGAKHEAWLLLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAIH  151 (317)
T ss_dssp             HHHHTCCCTTBCCCCEEEEE------EETTEEEEEEEEECCTTCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhcCCCCeeeEEEEEEe------ccCCCceeEEEEEeCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998741      112356789999999999999999876556677999999999999999999999


Q ss_pred             cCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC--------------ccCcccCCcccchhhhhhhhhhh
Q 024842          177 SLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF--------------ALGQRRYSCRNGLLSIVLHLSEL  242 (262)
Q Consensus       177 ~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~--------------~~~~~~~~~~~d~~s~g~~~~e~  242 (262)
                      +++  ++||||||+||+++.++    .++|+|||++.......              ..++..|.+||.+......  ..
T Consensus       152 ~~~--ivH~dlkp~NIl~~~~~----~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~--~~  223 (317)
T 2buj_A          152 AKG--YAHRDLKPTNILLGDEG----QPVLMDLGSMNQACIHVEGSRQALTLQDWAAQRCTISYRAPELFSVQSHC--VI  223 (317)
T ss_dssp             HTT--EECCCCCGGGEEECTTS----CEEECCCSSCEESCEEEESHHHHHHHHHHHHHHSCGGGCCGGGSSCCSEE--EE
T ss_pred             hCC--cccCCCCHHHEEEcCCC----CEEEEecCcchhcccccccccccccccccccccCCcccCCHhHhccCCCc--CC
Confidence            998  99999999999998776    69999999887653211              1245667777654321110  01


Q ss_pred             hhcCcccchheeheecccCC
Q 024842          243 LSCGTVRVIQILMRELMFGR  262 (262)
Q Consensus       243 ~~~~~v~~~g~~~~~l~~G~  262 (262)
                      ....|+|++|+++|+|++|+
T Consensus       224 ~~~~Di~slG~il~el~~g~  243 (317)
T 2buj_A          224 DERTDVWSLGCVLYAMMFGE  243 (317)
T ss_dssp             CTHHHHHHHHHHHHHHHHSS
T ss_pred             CchhhHHHHHHHHHHHHhCC
Confidence            12356777777777777664

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}

Probab=100.00  E-value=6e-35  Score=238.98  Aligned_cols=218  Identities=18%  Similarity=0.269  Sum_probs=148.8

Q ss_pred             cCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCcc-ceeehhh---hccchHHHHHHHHHHHHh
Q 024842           24 NENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDG-TYAMKKV---LIQNNEQLEMVREEIRVS   99 (262)
Q Consensus        24 ~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ik~~---~~~~~~~~~~~~~E~~~l   99 (262)
                      ..++|++.+.||+|+||.||+|++..+++.+++|................. ....+..   ........+.+.+|+.++
T Consensus        11 ~~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l   90 (298)
T 2zv2_A           11 QLNQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAIL   90 (298)
T ss_dssp             EETTEEEEEEEEC--CCEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHHHHH
T ss_pred             eecceEEEeEEeecCCEEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHH
Confidence            357899999999999999999999887765444421111100000000000 0000000   000112235688999999


Q ss_pred             hhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCC
Q 024842          100 SLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLE  179 (262)
Q Consensus       100 ~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~  179 (262)
                      +.++||||+++++++.        .......+++||++.+++|.++.     ....+++..++.++.|++.||.|||+.+
T Consensus        91 ~~l~h~~iv~~~~~~~--------~~~~~~~~lv~e~~~~~~l~~~~-----~~~~~~~~~~~~~~~qi~~~l~~lH~~~  157 (298)
T 2zv2_A           91 KKLDHPNVVKLVEVLD--------DPNEDHLYMVFELVNQGPVMEVP-----TLKPLSEDQARFYFQDLIKGIEYLHYQK  157 (298)
T ss_dssp             HTCCCTTBCCEEEEEE--------CSSSSEEEEEEECCTTCBSCCSS-----CSSCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HhCCCCCCCeEEEEEE--------cCCCCEEEEEEecCCCCcHHHHh-----hcCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            9999999999999873        12356789999999999998764     3456999999999999999999999999


Q ss_pred             CCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-----ccCcccCCcccchhhhhhhhhhhhhcCcccchhee
Q 024842          180 PPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQIL  254 (262)
Q Consensus       180 ~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~  254 (262)
                        ++||||||+||+++.++    .+||+|||++.......     ..+++.|.+||.+........  ....|+||+|++
T Consensus       158 --ivH~Dlkp~Nil~~~~~----~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~--~~~~Di~slG~~  229 (298)
T 2zv2_A          158 --IIHRDIKPSNLLVGEDG----HIKIADFGVSNEFKGSDALLSNTVGTPAFMAPESLSETRKIFS--GKALDVWAMGVT  229 (298)
T ss_dssp             --EECCCCCGGGEEECTTS----CEEECCCTTCEECSSSSCEECCCCSCGGGCCGGGCCTTCCCEE--SHHHHHHHHHHH
T ss_pred             --eeccCCCHHHEEECCCC----CEEEecCCCccccccccccccCCcCCccccChhhhccCCCCCC--CchhhhHhHHHH
Confidence              99999999999998776    69999999998765432     357778888886543221100  112588888888


Q ss_pred             heecccCC
Q 024842          255 MRELMFGR  262 (262)
Q Consensus       255 ~~~l~~G~  262 (262)
                      +|+|++|+
T Consensus       230 l~~l~~g~  237 (298)
T 2zv2_A          230 LYCFVFGQ  237 (298)
T ss_dssp             HHHHHHSS
T ss_pred             HHHHHHCC
Confidence            88888874

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}

Probab=100.00  E-value=3.1e-35  Score=250.40  Aligned_cols=200  Identities=24%  Similarity=0.275  Sum_probs=159.6

Q ss_pred             eecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc---hHHHHHHHHHHHH
Q 024842           22 WINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN---NEQLEMVREEIRV   98 (262)
Q Consensus        22 ~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~---~~~~~~~~~E~~~   98 (262)
                      .+..++|++.+.||+|+||.||+|++..+++                      .||+|++....   ....+.+.+|..+
T Consensus        57 ~~~~~~f~~~~~lG~G~fG~V~~~~~~~~~~----------------------~vAiK~l~k~~~~~~~~~~~~~~E~~i  114 (412)
T 2vd5_A           57 RLQRDDFEILKVIGRGAFSEVAVVKMKQTGQ----------------------VYAMKIMNKWDMLKRGEVSCFREERDV  114 (412)
T ss_dssp             SCCGGGEEEEEEEEECSSCEEEEEEETTTCC----------------------EEEEEEEEHHHHHHHGGGCCHHHHHHH
T ss_pred             cCChhhEEEEEEEeeCCCeEEEEEEECCCCC----------------------EEEEEEEeHHHhhhHHHHHHHHHHHHH
Confidence            3456899999999999999999999987655                      67777664321   1223457789999


Q ss_pred             hhhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcC
Q 024842           99 SSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSL  178 (262)
Q Consensus        99 l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~  178 (262)
                      +..++||||++++.++          ......|++|||+.+++|.+++..   .+..+++..++.++.|++.||+|||++
T Consensus       115 l~~~~hp~Iv~l~~~~----------~~~~~~~lVmE~~~gg~L~~~l~~---~~~~l~~~~~~~~~~qi~~aL~~LH~~  181 (412)
T 2vd5_A          115 LVNGDRRWITQLHFAF----------QDENYLYLVMEYYVGGDLLTLLSK---FGERIPAEMARFYLAEIVMAIDSVHRL  181 (412)
T ss_dssp             HHHSCTTTBCCEEEEE----------ECSSEEEEEECCCCSCBHHHHHHH---HSSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHhcCCCCeeeEEEEE----------eeCCEEEEEEcCCCCCcHHHHHHh---cCCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            9999999999999988          346789999999999999998863   234699999999999999999999999


Q ss_pred             CCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC------ccCcccCCcccchhhhhhh--hhhhhhcCcccc
Q 024842          179 EPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF------ALGQRRYSCRNGLLSIVLH--LSELLSCGTVRV  250 (262)
Q Consensus       179 ~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~------~~~~~~~~~~~d~~s~g~~--~~e~~~~~~v~~  250 (262)
                      +  |+||||||+|||++.++    .+||+|||++.......      ..+++.|.+||-+...+..  ........|+||
T Consensus       182 g--iiHrDLKp~NILld~~g----~vkL~DFGla~~~~~~~~~~~~~~~Gt~~Y~APE~l~~~~~~~~~~~~~~~~DiwS  255 (412)
T 2vd5_A          182 G--YVHRDIKPDNILLDRCG----HIRLADFGSCLKLRADGTVRSLVAVGTPDYLSPEILQAVGGGPGTGSYGPECDWWA  255 (412)
T ss_dssp             T--EECCCCSGGGEEECTTS----CEEECCCTTCEECCTTSCEECSSCCSCGGGCCHHHHHHHHTCTTCSEECTHHHHHH
T ss_pred             C--eeecccCHHHeeecCCC----CEEEeechhheeccCCCccccceeccccCcCCHHHHhhcccCcCCCCCChHHhhhH
Confidence            9  99999999999998777    69999999998765432      3578888888876543210  001122468999


Q ss_pred             hheeheecccCC
Q 024842          251 IQILMRELMFGR  262 (262)
Q Consensus       251 ~g~~~~~l~~G~  262 (262)
                      +|+++|||++|+
T Consensus       256 lGvilyelltG~  267 (412)
T 2vd5_A          256 LGVFAYEMFYGQ  267 (412)
T ss_dssp             HHHHHHHHHHSS
T ss_pred             HhHHHHHHHhCC
Confidence            999999999885

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A

Probab=100.00  E-value=1.3e-34  Score=236.40  Aligned_cols=190  Identities=23%  Similarity=0.280  Sum_probs=146.3

Q ss_pred             CceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc--chHHHHHHHHHHHHhhhCC
Q 024842           26 NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ--NNEQLEMVREEIRVSSLFS  103 (262)
Q Consensus        26 ~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~--~~~~~~~~~~E~~~l~~l~  103 (262)
                      ++|++.+.||+|+||.||+|++..+++                      .||+|++...  .....+.+.+|+.+++.++
T Consensus         2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~----------------------~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~   59 (292)
T 3o0g_A            2 QKYEKLEKIGEGTYGTVFKAKNRETHE----------------------IVALKRVRLDDDDEGVPSSALREICLLKELK   59 (292)
T ss_dssp             CSEEEEEEEEECSSSEEEEEEETTTCC----------------------EEEEEEEESSCSSTTHHHHHHHHHHHHTTCC
T ss_pred             CCceeeeEecCCCCeEEEEEEECCCCc----------------------eEEEEeeeccCCcCCcchHHHHHHHHHhcCC
Confidence            589999999999999999999987655                      5777766543  3334567889999999999


Q ss_pred             CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCee
Q 024842          104 HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYA  183 (262)
Q Consensus       104 h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~iv  183 (262)
                      ||||+++++++          ......+++||++.+ ++.+.+.   .....+++..++.++.|++.||.|||+++  |+
T Consensus        60 h~~iv~~~~~~----------~~~~~~~lv~e~~~~-~l~~~~~---~~~~~l~~~~~~~~~~ql~~~l~~lH~~~--iv  123 (292)
T 3o0g_A           60 HKNIVRLHDVL----------HSDKKLTLVFEFCDQ-DLKKYFD---SCNGDLDPEIVKSFLFQLLKGLGFCHSRN--VL  123 (292)
T ss_dssp             CTTBCCEEEEE----------EETTEEEEEEECCSE-EHHHHHH---HTTTCCCHHHHHHHHHHHHHHHHHHHHTT--EE
T ss_pred             CCCEeeEEeEE----------EeCCEEEEEEecCCC-CHHHHHH---hCCCCCCHHHHHHHHHHHHHHHHHHHhCC--ee
Confidence            99999999987          336679999999875 5555443   24556999999999999999999999999  99


Q ss_pred             ecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-----ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheec
Q 024842          184 HNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMREL  258 (262)
Q Consensus       184 H~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l  258 (262)
                      ||||||+||+++.++    .+||+|||++.....+.     ..++..|.+||.+.....    .....|+||+|+++++|
T Consensus       124 H~dikp~Nil~~~~~----~~kl~Dfg~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~----~~~~~DiwslG~il~~l  195 (292)
T 3o0g_A          124 HRDLKPQNLLINRNG----ELKLANFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKL----YSTSIDMWSAGCIFAEL  195 (292)
T ss_dssp             CCCCSGGGEEECTTS----CEEECCCTTCEECCSCCSCCCSCCSCGGGCCHHHHTTCSC----CCTHHHHHHHHHHHHHH
T ss_pred             cCCCCHHHEEEcCCC----CEEEeecccceecCCccccccCCccccCCcChHHHcCCCC----cCchHHHHHHHHHHHHH
Confidence            999999999998776    69999999998765322     245566666665432210    11124677777777777


Q ss_pred             ccC
Q 024842          259 MFG  261 (262)
Q Consensus       259 ~~G  261 (262)
                      ++|
T Consensus       196 ~~~  198 (292)
T 3o0g_A          196 ANA  198 (292)
T ss_dssp             TTT
T ss_pred             HHc
Confidence            655

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...

Probab=100.00  E-value=1.4e-34  Score=239.85  Aligned_cols=198  Identities=18%  Similarity=0.231  Sum_probs=148.1

Q ss_pred             ceeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc-hHHHHHHHHHHHH
Q 024842           20 DVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN-NEQLEMVREEIRV   98 (262)
Q Consensus        20 ~~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~-~~~~~~~~~E~~~   98 (262)
                      ...+..++|++.+.||+|+||.||+|++..+++.+++                  .+++|.+.... ....+.+.+|+.+
T Consensus         9 ~~~l~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~------------------~vaiK~~~~~~~~~~~~~~~~E~~~   70 (327)
T 3poz_A            9 LRILKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKI------------------PVAIKELREATSPKANKEILDEAYV   70 (327)
T ss_dssp             SEECCGGGEEEEEEEEEETTEEEEEEEECC----CCE------------------EEEEEEC-------CHHHHHHHHHH
T ss_pred             HhhcCHHHcccceEEeeCCCeEEEEEEEcCCCceEEE------------------EEEEeecccccCHHHHHHHHHHHHH
Confidence            4456678999999999999999999999877665443                  36777665432 2335678899999


Q ss_pred             hhhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcC
Q 024842           99 SSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSL  178 (262)
Q Consensus        99 l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~  178 (262)
                      ++.++||||+++++++.           ....+++++++.+++|.+++..   ....+++..++.++.|++.||.|||+.
T Consensus        71 l~~l~h~~iv~~~~~~~-----------~~~~~~v~e~~~~g~L~~~l~~---~~~~~~~~~~~~~~~qi~~~l~~LH~~  136 (327)
T 3poz_A           71 MASVDNPHVCRLLGICL-----------TSTVQLITQLMPFGCLLDYVRE---HKDNIGSQYLLNWCVQIAKGMNYLEDR  136 (327)
T ss_dssp             HHHCCBTTBCCEEEEEE-----------SSSEEEEEECCTTCBHHHHHHH---STTSCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHhCCCCCEeEEEEEEe-----------cCCeEEEEEecCCCcHHHHHHh---cCCCCCHHHHHHHHHHHHHHHHHHhhC
Confidence            99999999999999874           2347899999999999998863   345699999999999999999999999


Q ss_pred             CCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-------ccCcccCCcccchhhhhhhhhhhhhcCcccch
Q 024842          179 EPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-------ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVI  251 (262)
Q Consensus       179 ~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-------~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~  251 (262)
                      +  |+||||||+|||++.++    .+||+|||++.......       ..++..|.+||.+..-.     .....||||+
T Consensus       137 ~--ivH~Dikp~NIll~~~~----~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~-----~~~~~Di~sl  205 (327)
T 3poz_A          137 R--LVHRDLAARNVLVKTPQ----HVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRI-----YTHQSDVWSY  205 (327)
T ss_dssp             T--CCCSCCCGGGEEEEETT----EEEECCTTHHHHHTTTCC-------CCCGGGSCHHHHHHCC-----CCHHHHHHHH
T ss_pred             C--eeCCCCChheEEECCCC----CEEEccCcceeEccCCcccccccCCCccccccChHHhccCC-----CCchhhhhhh
Confidence            8  99999999999998877    69999999998664332       12344677776443211     1123466666


Q ss_pred             heeheeccc
Q 024842          252 QILMRELMF  260 (262)
Q Consensus       252 g~~~~~l~~  260 (262)
                      |+++|+|++
T Consensus       206 G~il~ellt  214 (327)
T 3poz_A          206 GVTVWELMT  214 (327)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHh
Confidence            666666665

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A

Probab=100.00  E-value=5.6e-35  Score=245.40  Aligned_cols=196  Identities=20%  Similarity=0.307  Sum_probs=149.6

Q ss_pred             eecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhh
Q 024842           22 WINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSL  101 (262)
Q Consensus        22 ~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~  101 (262)
                      ....++|++.+.||+|+||.||++++..+++                      .||+|++...... .+.+.+|+.+++.
T Consensus        16 ~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~----------------------~vavK~~~~~~~~-~~~~~~E~~~l~~   72 (361)
T 3uc3_A           16 MHDSDRYDFVKDIGSGNFGVARLMRDKLTKE----------------------LVAVKYIERGAAI-DENVQREIINHRS   72 (361)
T ss_dssp             CCCTTTEEEEEEESSSTTSSEEEEEETTTCC----------------------EEEEEEEESSTTS-CHHHHHHHHHHHH
T ss_pred             CCCCCcEEEEEEeccCCCEEEEEEEECCCCc----------------------EEEEEEEecCccc-cHHHHHHHHHHHh
Confidence            3456899999999999999999999987655                      5777766543222 2567789999999


Q ss_pred             CCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCC
Q 024842          102 FSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPP  181 (262)
Q Consensus       102 l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~  181 (262)
                      ++||||+++++++.          .....+++|||+.+++|.+++.    ....+++..++.++.|++.||.|||+++  
T Consensus        73 l~hpniv~~~~~~~----------~~~~~~lv~e~~~~~~L~~~l~----~~~~~~~~~~~~i~~ql~~~L~~LH~~~--  136 (361)
T 3uc3_A           73 LRHPNIVRFKEVIL----------TPTHLAIIMEYASGGELYERIC----NAGRFSEDEARFFFQQLLSGVSYCHSMQ--  136 (361)
T ss_dssp             CCCTTBCCEEEEEE----------CSSEEEEEEECCCSCBHHHHHH----HHSSCCHHHHHHHHHHHHHHHHHHHHTT--
T ss_pred             CCCCCCCcEEEEEe----------eCCEEEEEEEeCCCCCHHHHHH----hcCCCCHHHHHHHHHHHHHHHHHHHHCC--
Confidence            99999999999883          3667999999999999999886    3445999999999999999999999999  


Q ss_pred             eeecCCCCCcEEEecCCCCCCceEEeeccceeeccc----cCccCcccCCcccchhhhhhhhhhhhhcCcccchheehee
Q 024842          182 YAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQS----KFALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRE  257 (262)
Q Consensus       182 ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~----~~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~  257 (262)
                      |+||||||+||+++.++.  ..+||+|||++.....    ....+++.|.+||.+....+..    ...|+||+|+++|+
T Consensus       137 ivH~Dlkp~Nill~~~~~--~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~----~~~DiwslG~il~e  210 (361)
T 3uc3_A          137 ICHRDLKLENTLLDGSPA--PRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLRQEYDG----KIADVWSCGVTLYV  210 (361)
T ss_dssp             CCSCCCCGGGEEECSSSS--CCEEECCCCCC---------------CTTSCHHHHHCSSCCH----HHHHHHHHHHHHHH
T ss_pred             cccCCCCHHHEEEcCCCC--ceEEEeecCccccccccCCCCCCcCCCCcCChhhhcCCCCCC----CeeeeehhHHHHHH
Confidence            999999999999976542  2499999999874322    2235777888887654322111    11578888888888


Q ss_pred             cccCC
Q 024842          258 LMFGR  262 (262)
Q Consensus       258 l~~G~  262 (262)
                      |++|+
T Consensus       211 ll~g~  215 (361)
T 3uc3_A          211 MLVGA  215 (361)
T ss_dssp             HHHSS
T ss_pred             HHhCC
Confidence            88774

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=100.00  E-value=6.4e-35  Score=241.28  Aligned_cols=195  Identities=22%  Similarity=0.257  Sum_probs=155.3

Q ss_pred             cCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCC
Q 024842           24 NENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFS  103 (262)
Q Consensus        24 ~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~  103 (262)
                      ..++|++.+.||+|+||.||+|++. +                      +..|++|+.........+.+.+|+.+++.++
T Consensus        37 ~~~~y~~~~~lg~G~~g~Vy~~~~~-~----------------------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~   93 (321)
T 2qkw_B           37 ATNNFDHKFLIGHGVFGKVYKGVLR-D----------------------GAKVALKRRTPESSQGIEEFETEIETLSFCR   93 (321)
T ss_dssp             CCCCCSCCCCSCBCSSSEEEEEECT-T----------------------CCEEEEEECCSCCSSHHHHHHHHHHGGGSCC
T ss_pred             HHhccCccceeecCCCeeEEEEEEC-C----------------------CCEEEEEEecccChHHHHHHHHHHHHHHhCC
Confidence            3579999999999999999999964 2                      2368888777666666778999999999999


Q ss_pred             CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCee
Q 024842          104 HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYA  183 (262)
Q Consensus       104 h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~iv  183 (262)
                      ||||+++++++          ......+++|||+.+++|.+++.........+++..++.++.|++.||.|||+++  ++
T Consensus        94 h~~iv~~~~~~----------~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~--iv  161 (321)
T 2qkw_B           94 HPHLVSLIGFC----------DERNEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHTRA--II  161 (321)
T ss_dssp             CTTBCCEEEEC----------CCTTCCEEEEECCTTCBTGGGSSSSCCCSCCCCHHHHHHHHHHHHHHHHHHHHTT--EE
T ss_pred             CCCEeeEEEEE----------cCCCeEEEEEEcCCCCcHHHHHhccCCCccccCHHHHHHHHHHHHHHHHHhcCCC--ee
Confidence            99999999987          4466789999999999999987533323345899999999999999999999998  99


Q ss_pred             ecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-------ccCcccCCcccchhhhhhhhhhhhhcCcccchheehe
Q 024842          184 HNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-------ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMR  256 (262)
Q Consensus       184 H~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-------~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~  256 (262)
                      ||||||+||+++.++    .+||+|||++.......       ..++..|.+||.+..-.     .....|+|++|+++|
T Consensus       162 H~dlkp~Nil~~~~~----~~kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-----~~~~~Di~slG~il~  232 (321)
T 2qkw_B          162 HRDVKSINILLDENF----VPKITDFGISKKGTELDQTHLSTVVKGTLGYIDPEYFIKGR-----LTEKSDVYSFGVVLF  232 (321)
T ss_dssp             CSCCCSTTEEECTTC----CEEECCCTTCEECSSSSCCCCBCCCEEETTTCCHHHHHHCB-----CCTHHHHHHHHHHHH
T ss_pred             cCCCCHHHEEECCCC----CEEEeecccccccccccccccccccCCCccccCHHHhcCCC-----CCcccchHhHHHHHH
Confidence            999999999998776    69999999998654221       23567788777553221     122357777777777


Q ss_pred             ecccCC
Q 024842          257 ELMFGR  262 (262)
Q Consensus       257 ~l~~G~  262 (262)
                      +|++|+
T Consensus       233 ell~g~  238 (321)
T 2qkw_B          233 EVLCAR  238 (321)
T ss_dssp             HHHHCC
T ss_pred             HHHhCC
Confidence            777774

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A

Probab=100.00  E-value=4e-34  Score=240.92  Aligned_cols=202  Identities=20%  Similarity=0.308  Sum_probs=152.2

Q ss_pred             ecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc-chHHHHHHHHHHHHhhh
Q 024842           23 INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ-NNEQLEMVREEIRVSSL  101 (262)
Q Consensus        23 ~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~-~~~~~~~~~~E~~~l~~  101 (262)
                      +..++|++.+.||+|+||.||+|++....+.               ....+..||+|.+... .....+.+.+|+.+++.
T Consensus        78 ~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~---------------~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~  142 (370)
T 2psq_A           78 FPRDKLTLGKPLGEGCFGQVVMAEAVGIDKD---------------KPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKM  142 (370)
T ss_dssp             CCGGGEEEEEEESCCSSSEEEEEEEETCSTT---------------CTTCEEEEEEEECCTTCBHHHHHHHHHHHHHHHH
T ss_pred             ccHHHCEeeeEEeeCCCeeEEEEEEecccCc---------------CcCcceeEEEEEecCCcCHHHHHHHHHHHHHHHH
Confidence            4467999999999999999999997643221               0112346888887654 34446788999999999


Q ss_pred             C-CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhh------------cCCCCCHHHHHHHHHHH
Q 024842          102 F-SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQT------------KKEFFSTSDVLQIFYQI  168 (262)
Q Consensus       102 l-~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~------------~~~~~~~~~~~~i~~ql  168 (262)
                      + +||||+++++++          ...+..|++|||+.+++|.+++.....            ....+++..++.++.|+
T Consensus       143 l~~hpnIv~~~~~~----------~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi  212 (370)
T 2psq_A          143 IGKHKNIINLLGAC----------TQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQL  212 (370)
T ss_dssp             SCCCTTBCCEEEEE----------CSSSSCEEEEECCTTCBHHHHHHHTCCC-----------CCCCCCHHHHHHHHHHH
T ss_pred             hcCCCCEeeEEEEE----------ccCCCEEEEEEcCCCCCHHHHHHhhCCccccccccccccccccCCHHHHHHHHHHH
Confidence            9 899999999987          346679999999999999999874321            12358999999999999


Q ss_pred             HHHHHHHHcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-------ccCcccCCcccchhhhhhhhhh
Q 024842          169 CAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-------ALGQRRYSCRNGLLSIVLHLSE  241 (262)
Q Consensus       169 ~~~l~~lH~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-------~~~~~~~~~~~d~~s~g~~~~e  241 (262)
                      +.||.|||+++  |+||||||+|||++.++    .+||+|||++.......       ..++..|.+||.+..-.     
T Consensus       213 ~~aL~~LH~~~--ivHrDlkp~NIll~~~~----~~kl~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~-----  281 (370)
T 2psq_A          213 ARGMEYLASQK--CIHRDLAARNVLVTENN----VMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRV-----  281 (370)
T ss_dssp             HHHHHHHHHTT--EECSCCCGGGEEECTTC----CEEECCCSSCEETTCCCTTCTTTTTTSCGGGCCHHHHHTCC-----
T ss_pred             HHHHHHHHhCC--eeccccchhhEEECCCC----CEEEccccCCcccCcccceecccCCCcccceECHhHhcCCC-----
Confidence            99999999999  99999999999998776    69999999998665322       12345577776442211     


Q ss_pred             hhhcCcccchheeheeccc
Q 024842          242 LLSCGTVRVIQILMRELMF  260 (262)
Q Consensus       242 ~~~~~~v~~~g~~~~~l~~  260 (262)
                      .....|+|++|+++|||++
T Consensus       282 ~~~~~DvwslG~il~ellt  300 (370)
T 2psq_A          282 YTHQSDVWSFGVLMWEIFT  300 (370)
T ss_dssp             CCHHHHHHHHHHHHHHHHT
T ss_pred             CCcHHHHHHHHHHHHHHHc
Confidence            1112466666666666665

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B

Probab=100.00  E-value=1.5e-34  Score=253.24  Aligned_cols=197  Identities=20%  Similarity=0.254  Sum_probs=159.2

Q ss_pred             ecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc---hHHHHHHHHHHHHh
Q 024842           23 INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN---NEQLEMVREEIRVS   99 (262)
Q Consensus        23 ~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~---~~~~~~~~~E~~~l   99 (262)
                      +..++|++.+.||+|+||.||+|++..+++                      .||+|++....   ....+.+..|+.++
T Consensus       182 ~~~~~f~~~~~LG~G~fG~Vy~a~~~~tg~----------------------~vAiK~l~k~~~~~~~~~~~~~~E~~iL  239 (543)
T 3c4z_A          182 MGEDWFLDFRVLGRGGFGEVFACQMKATGK----------------------LYACKKLNKKRLKKRKGYQGAMVEKKIL  239 (543)
T ss_dssp             CCGGGEEEEEEEEECSSSEEEEEEETTTCC----------------------EEEEEEEEHHHHHHTTCHHHHHHHHHHH
T ss_pred             CChhheEEEEEEeeCCCeEEEEEEECCCCc----------------------EEEEEEEEhHHhhhhHHHHHHHHHHHHH
Confidence            446789999999999999999999987655                      57777664332   22246678899999


Q ss_pred             hhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCC
Q 024842          100 SLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLE  179 (262)
Q Consensus       100 ~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~  179 (262)
                      +.++||||++++.++          ......|++|||+.+++|.+++.........+++..++.++.||+.||.|||+++
T Consensus       240 ~~l~hp~Iv~l~~~~----------~~~~~l~lVmE~~~gg~L~~~l~~~~~~~~~l~e~~~~~~~~qi~~aL~~LH~~g  309 (543)
T 3c4z_A          240 AKVHSRFIVSLAYAF----------ETKTDLCLVMTIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLHQRN  309 (543)
T ss_dssp             HHCCCTTBCCEEEEE----------ECSSEEEEEECCCTTCBHHHHHHTSSTTSCSCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HhcCCCCEeeEEEEE----------eeCCEEEEEEEeccCCCHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHcC
Confidence            999999999999887          3467799999999999999988654333456999999999999999999999999


Q ss_pred             CCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-----ccCcccCCcccchhhhhhhhhhhhhcCcccchhee
Q 024842          180 PPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQIL  254 (262)
Q Consensus       180 ~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~  254 (262)
                        |+||||||+|||++.++    .+||+|||++.......     ..+++.|.+||-+..-++.     ...|+||+|++
T Consensus       310 --IvHrDLKP~NILl~~~g----~vkL~DFGla~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~-----~~~DiwSlGvi  378 (543)
T 3c4z_A          310 --IIYRDLKPENVLLDDDG----NVRISDLGLAVELKAGQTKTKGYAGTPGFMAPELLLGEEYD-----FSVDYFALGVT  378 (543)
T ss_dssp             --EECCCCCGGGEEECTTS----CEEECCCTTCEECCTTCCCBCCCCSCTTTSCHHHHTTCCBC-----THHHHHHHHHH
T ss_pred             --CcccCCChHHEEEeCCC----CEEEeecceeeeccCCCcccccccCCccccChhhhcCCCCC-----hHHhcCcchHH
Confidence              99999999999998777    69999999998765432     2678888888866443221     23578888888


Q ss_pred             heecccCC
Q 024842          255 MRELMFGR  262 (262)
Q Consensus       255 ~~~l~~G~  262 (262)
                      +|||++|+
T Consensus       379 lyelltG~  386 (543)
T 3c4z_A          379 LYEMIAAR  386 (543)
T ss_dssp             HHHHHHSS
T ss_pred             HHHHHhCC
Confidence            88888874

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*

Probab=100.00  E-value=6.8e-34  Score=241.14  Aligned_cols=205  Identities=20%  Similarity=0.255  Sum_probs=157.6

Q ss_pred             CCCCCceeecCCceEEEEEeecc--cceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc--chHHHH
Q 024842           15 VNGGGDVWINENRYRILRQLGEG--GFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ--NNEQLE   90 (262)
Q Consensus        15 ~~~~~~~~~~~~~y~~~~~ig~G--~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~--~~~~~~   90 (262)
                      .+..+......++|++.+.||+|  +||.||+|++..+++                      .||+|++...  .....+
T Consensus        14 ~~~~s~~~~~~~~y~~~~~lG~G~~~~g~V~~~~~~~~~~----------------------~vavK~~~~~~~~~~~~~   71 (389)
T 3gni_B           14 FQGMSSFLPEGGCYELLTVIGKGFEDLMTVNLARYKPTGE----------------------YVTVRRINLEACSNEMVT   71 (389)
T ss_dssp             CC--CCCCCCGGGEEEEEEEEEETTTTEEEEEEEETTTCC----------------------EEEEEEEEGGGSCHHHHH
T ss_pred             hhhhhcccCCCCcEEEEecccCCcCCceEEEEEEEcCCCC----------------------EEEEEEecccccChHHHH
Confidence            44455566678899999999999  999999999987655                      6777776544  344557


Q ss_pred             HHHHHHHHhhhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHH
Q 024842           91 MVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICA  170 (262)
Q Consensus        91 ~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~  170 (262)
                      .+.+|+.+++.++||||+++++++.          .....+++|||+.+++|.+++...  ....+++..++.++.||+.
T Consensus        72 ~~~~E~~~l~~l~h~niv~~~~~~~----------~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~~~qi~~  139 (389)
T 3gni_B           72 FLQGELHVSKLFNHPNIVPYRATFI----------ADNELWVVTSFMAYGSAKDLICTH--FMDGMNELAIAYILQGVLK  139 (389)
T ss_dssp             HHHHHHHHHHHCCCTTBCCEEEEEE----------ETTEEEEEEECCTTCBHHHHHHHT--CTTCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCCCcEeEEEE----------ECCEEEEEEEccCCCCHHHHHhhh--cccCCCHHHHHHHHHHHHH
Confidence            7889999999999999999999883          366799999999999999988632  2245999999999999999


Q ss_pred             HHHHHHcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC------------ccCcccCCcccchhhhhhh
Q 024842          171 GLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF------------ALGQRRYSCRNGLLSIVLH  238 (262)
Q Consensus       171 ~l~~lH~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~------------~~~~~~~~~~~d~~s~g~~  238 (262)
                      ||.|||+++  |+||||||+|||++.++    .+||+|||.+.......            ..++..|.+||.+....  
T Consensus       140 ~l~~LH~~~--ivHrDlkp~NIll~~~~----~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~--  211 (389)
T 3gni_B          140 ALDYIHHMG--YVHRSVKASHILISVDG----KVYLSGLRSNLSMISHGQRQRVVHDFPKYSVKVLPWLSPEVLQQNL--  211 (389)
T ss_dssp             HHHHHHHTT--EECCCCSGGGEEECTTC----CEEECCGGGCEECEETTEECSCBCCCCTTCTTTGGGSCHHHHSTTS--
T ss_pred             HHHHHHhCC--eecCCCCHHHEEEcCCC----CEEEcccccceeeccccccccccccccccccccccccCHHHHhccC--
Confidence            999999999  99999999999998776    69999999887543211            23455566666443210  


Q ss_pred             hhhhhhcCcccchheeheecccCC
Q 024842          239 LSELLSCGTVRVIQILMRELMFGR  262 (262)
Q Consensus       239 ~~e~~~~~~v~~~g~~~~~l~~G~  262 (262)
                       .......|+||+|+++|+|++|+
T Consensus       212 -~~~~~~~DiwslG~il~el~~g~  234 (389)
T 3gni_B          212 -QGYDAKSDIYSVGITACELANGH  234 (389)
T ss_dssp             -SCBCTHHHHHHHHHHHHHHHHSS
T ss_pred             -CCCCcHhHHHHHHHHHHHHHHCC
Confidence             01112357777777777777774

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*

Probab=100.00  E-value=1.5e-34  Score=234.07  Aligned_cols=193  Identities=22%  Similarity=0.318  Sum_probs=154.4

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCCC
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSH  104 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~h  104 (262)
                      .++|++.+.||+|+||.||+|.+..+++                      .+++|++........+.+.+|+.+++.++|
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~----------------------~~a~k~~~~~~~~~~~~~~~E~~~l~~l~h   65 (277)
T 3f3z_A            8 NQYYTLENTIGRGSWGEVKIAVQKGTRI----------------------RRAAKKIPKYFVEDVDRFKQEIEIMKSLDH   65 (277)
T ss_dssp             HHHEEEEEEEEEETTEEEEEEEETTTCC----------------------EEEEEEEEGGGCSCHHHHHHHHHHHHTCCC
T ss_pred             hhhEEeeeEEeecCCEEEEEEEeCCCCc----------------------EEEEEeehhhccchHHHHHHHHHHHHhCCC
Confidence            4689999999999999999999887654                      577777665544445778899999999999


Q ss_pred             CCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeee
Q 024842          105 RNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAH  184 (262)
Q Consensus       105 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH  184 (262)
                      |||+++++++          ......+++||++.+++|.+++.    ....+++..++.++.|++.||.|||+++  ++|
T Consensus        66 ~~i~~~~~~~----------~~~~~~~lv~e~~~~~~L~~~~~----~~~~~~~~~~~~i~~~i~~~l~~lH~~~--i~H  129 (277)
T 3f3z_A           66 PNIIRLYETF----------EDNTDIYLVMELCTGGELFERVV----HKRVFRESDAARIMKDVLSAVAYCHKLN--VAH  129 (277)
T ss_dssp             TTBCCEEEEE----------ECSSEEEEEEECCCSCBHHHHHH----HHCSCCHHHHHHHHHHHHHHHHHHHHTT--EEC
T ss_pred             CCEeeEEEEE----------ecCCeEEEEEeccCCCcHHHHHH----HcCCCCHHHHHHHHHHHHHHHHHHHHCC--ccC
Confidence            9999999987          34667899999999999998876    3455999999999999999999999999  999


Q ss_pred             cCCCCCcEEEecCCCCCCceEEeeccceeeccccC----ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheeccc
Q 024842          185 NDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMF  260 (262)
Q Consensus       185 ~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~  260 (262)
                      +||||+||++..++ ....++|+|||++.......    ..+++.|.+||.+...      .....|+|++|+++++|++
T Consensus       130 ~dlkp~Nil~~~~~-~~~~~~l~Dfg~~~~~~~~~~~~~~~~t~~y~aPE~~~~~------~~~~~Di~slG~~l~~l~~  202 (277)
T 3f3z_A          130 RDLKPENFLFLTDS-PDSPLKLIDFGLAARFKPGKMMRTKVGTPYYVSPQVLEGL------YGPECDEWSAGVMMYVLLC  202 (277)
T ss_dssp             CCCSGGGEEESSSS-TTCCEEECCCTTCEECCTTSCBCCCCSCTTTCCHHHHTTC------BCTTHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHEEEecCC-CCCcEEEEecccceeccCccchhccCCCCCccChHHhccc------CCchhhehhHHHHHHHHHH
Confidence            99999999994322 11269999999998765432    3567778888754221      2234678888888888877


Q ss_pred             CC
Q 024842          261 GR  262 (262)
Q Consensus       261 G~  262 (262)
                      |+
T Consensus       203 g~  204 (277)
T 3f3z_A          203 GY  204 (277)
T ss_dssp             SS
T ss_pred             CC
Confidence            74

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*

Probab=100.00  E-value=1.2e-34  Score=243.96  Aligned_cols=193  Identities=20%  Similarity=0.289  Sum_probs=146.0

Q ss_pred             ecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc---chHHHHHHHHHHHH-
Q 024842           23 INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ---NNEQLEMVREEIRV-   98 (262)
Q Consensus        23 ~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~---~~~~~~~~~~E~~~-   98 (262)
                      +..++|++.+.||+|+||.||+|++..+++                      .||+|++...   .......+..|..+ 
T Consensus        35 ~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~----------------------~~AiK~~~~~~~~~~~~~~~~~~e~~~l   92 (373)
T 2r5t_A           35 AKPSDFHFLKVIGKGSFGKVLLARHKAEEV----------------------FYAVKVLQKKAILKKKEEKHIMSERNVL   92 (373)
T ss_dssp             CCGGGEEEEEEEECCTTCEEEEEEETTTCC----------------------EEEEEEEEGGGBC-------------CC
T ss_pred             CChhheEEEEEEeeCCCeEEEEEEEcCCCC----------------------EEEEEEEEHHHhhhhHHHHHHHHHHHHH
Confidence            445799999999999999999999887655                      5677765433   22233455667666 


Q ss_pred             hhhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcC
Q 024842           99 SSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSL  178 (262)
Q Consensus        99 l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~  178 (262)
                      ++.++||||+++++.+          ......|++|||+.+++|.+++.    ....+++..++.++.|++.||+|||++
T Consensus        93 l~~~~hp~Iv~l~~~~----------~~~~~~~lv~E~~~gg~L~~~l~----~~~~~~~~~~~~~~~qi~~aL~~LH~~  158 (373)
T 2r5t_A           93 LKNVKHPFLVGLHFSF----------QTADKLYFVLDYINGGELFYHLQ----RERCFLEPRARFYAAEIASALGYLHSL  158 (373)
T ss_dssp             BCCCCCTTBCCEEEEE----------ECSSEEEEEEECCCSCBHHHHHH----HHSSCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHhCCCCCCCCEEEEE----------EeCCEEEEEEeCCCCCcHHHHHH----hcCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            5778999999999987          34678999999999999999886    345699999999999999999999999


Q ss_pred             CCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccc-----cCccCcccCCcccchhhhhhhhhhhhhcCcccchhe
Q 024842          179 EPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQS-----KFALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQI  253 (262)
Q Consensus       179 ~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~-----~~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~  253 (262)
                      +  |+||||||+|||++.++    .+||+|||++.....     ....+++.|.+||.+..-++.     ...|+|++|+
T Consensus       159 g--ivHrDlkp~NIll~~~g----~ikL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~-----~~~DiwslG~  227 (373)
T 2r5t_A          159 N--IVYRDLKPENILLDSQG----HIVLTDFGLCKENIEHNSTTSTFCGTPEYLAPEVLHKQPYD-----RTVDWWCLGA  227 (373)
T ss_dssp             T--CCCCCCCGGGEEECTTS----CEEECCCCBCGGGBCCCCCCCSBSCCCCCCCHHHHTTCCCC-----THHHHHHHHH
T ss_pred             C--ceecCCCHHHEEECCCC----CEEEeeCccccccccCCCccccccCCccccCHHHhCCCCCC-----chhhhHHHHH
Confidence            9  99999999999998777    699999999976322     223577888888865433221     2357888888


Q ss_pred             eheecccCC
Q 024842          254 LMRELMFGR  262 (262)
Q Consensus       254 ~~~~l~~G~  262 (262)
                      ++|||++|+
T Consensus       228 il~ell~G~  236 (373)
T 2r5t_A          228 VLYEMLYGL  236 (373)
T ss_dssp             HHHHHHHSS
T ss_pred             HHHHHHcCC
Confidence            888888774

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A

Probab=100.00  E-value=1.8e-34  Score=240.53  Aligned_cols=191  Identities=20%  Similarity=0.334  Sum_probs=152.9

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhC-C
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLF-S  103 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l-~  103 (262)
                      .++|++.+.||+|+||.||+|.+..+++                      .||+|.+.....    ...+|++++..+ +
T Consensus        21 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~----------------------~~avK~~~~~~~----~~~~E~~~l~~~~~   74 (342)
T 2qr7_A           21 TDGYEVKEDIGVGSYSVCKRCIHKATNM----------------------EFAVKIIDKSKR----DPTEEIEILLRYGQ   74 (342)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTTE----------------------EEEEEEEETTTC----CCHHHHHHHHHHTT
T ss_pred             cccEEEEEEEeeCCCEEEEEEEECCCCC----------------------EEEEEEEEcccC----ChHHHHHHHHHhcC
Confidence            5689999999999999999999987655                      577776644322    223577777766 7


Q ss_pred             CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCee
Q 024842          104 HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYA  183 (262)
Q Consensus       104 h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~iv  183 (262)
                      ||||+++++++          ......|++|||+.+++|.+.+.    ....+++..++.++.|++.||.|||+++  |+
T Consensus        75 hp~iv~~~~~~----------~~~~~~~lv~E~~~gg~L~~~i~----~~~~~~~~~~~~~~~qi~~al~~lH~~g--iv  138 (342)
T 2qr7_A           75 HPNIITLKDVY----------DDGKYVYVVTELMKGGELLDKIL----RQKFFSEREASAVLFTITKTVEYLHAQG--VV  138 (342)
T ss_dssp             STTBCCEEEEE----------ECSSEEEEEECCCCSCBHHHHHH----TCTTCCHHHHHHHHHHHHHHHHHHHHTT--EE
T ss_pred             CCCcCeEEEEE----------EcCCEEEEEEeCCCCCcHHHHHH----HcCCCCHHHHHHHHHHHHHHHHHHHHCC--cE
Confidence            99999999987          34677999999999999999886    4556999999999999999999999999  99


Q ss_pred             ecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-----ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheec
Q 024842          184 HNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMREL  258 (262)
Q Consensus       184 H~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l  258 (262)
                      ||||||+|||+..+.+....+||+|||++.......     ..+++.|.+||.+...++.     ...|+||+|+++|+|
T Consensus       139 HrDlkp~NIl~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~-----~~~DiwslG~il~el  213 (342)
T 2qr7_A          139 HRDLKPSNILYVDESGNPESIRICDFGFAKQLRAENGLLMTPCYTANFVAPEVLERQGYD-----AACDIWSLGVLLYTM  213 (342)
T ss_dssp             CSCCCGGGEEESSSSCSGGGEEECCCTTCEECBCTTCCBCCSSCCSSCCCHHHHHHHHHH-----HHHHHHHHHHHHHHH
T ss_pred             eccCCHHHEEEecCCCCcCeEEEEECCCcccCcCCCCceeccCCCccccCHHHhcCCCCC-----CccCeeeHhHHHHHH
Confidence            999999999996554333469999999998765432     3467888888876543322     236889999989888


Q ss_pred             ccCC
Q 024842          259 MFGR  262 (262)
Q Consensus       259 ~~G~  262 (262)
                      ++|+
T Consensus       214 l~g~  217 (342)
T 2qr7_A          214 LTGY  217 (342)
T ss_dssp             HHSS
T ss_pred             hcCC
Confidence            8874

>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=100.00  E-value=2.1e-34  Score=232.40  Aligned_cols=194  Identities=20%  Similarity=0.242  Sum_probs=150.0

Q ss_pred             CceeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHH
Q 024842           19 GDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRV   98 (262)
Q Consensus        19 ~~~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~   98 (262)
                      +...+..++|++.+.||+|+||.||+|++..+                       +.+|+|++...... .+.+.+|+.+
T Consensus         3 ~~~~i~~~~y~~~~~lg~G~~g~V~~~~~~~~-----------------------~~vavK~~~~~~~~-~~~~~~E~~~   58 (269)
T 4hcu_A            3 GKWVIDPSELTFVQEIGSGQFGLVHLGYWLNK-----------------------DKVAIKTIREGAMS-EEDFIEEAEV   58 (269)
T ss_dssp             --CBCCGGGEEEEEEEEECSSCEEEEEEETTT-----------------------EEEEEEEECTTSBC-HHHHHHHHHH
T ss_pred             ccEEeChhhceeeheecCCCccEEEEEEecCC-----------------------CeEEEEEecccccC-HHHHHHHHHH
Confidence            44557789999999999999999999997632                       35788877654332 2568899999


Q ss_pred             hhhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcC
Q 024842           99 SSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSL  178 (262)
Q Consensus        99 l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~  178 (262)
                      ++.++||||+++++++          ......+++||++.+++|.+++..   ....+++..++.++.|++.||.|||+.
T Consensus        59 l~~l~h~~i~~~~~~~----------~~~~~~~lv~e~~~~~~L~~~l~~---~~~~~~~~~~~~i~~~i~~~l~~lH~~  125 (269)
T 4hcu_A           59 MMKLSHPKLVQLYGVC----------LEQAPICLVFEFMEHGCLSDYLRT---QRGLFAAETLLGMCLDVCEGMAYLEEA  125 (269)
T ss_dssp             HHTCCCTTBCCEEEEE----------CSSSSEEEEEECCTTCBHHHHHHT---TTTCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHhCCCCCEeeEEEEE----------ecCCceEEEEEeCCCCcHHHHHHh---cCcccCHHHHHHHHHHHHHHHHHHHhC
Confidence            9999999999999987          345678999999999999998852   345589999999999999999999999


Q ss_pred             CCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC------ccCcccCCcccchhhhhhhhhhhhhcCcccchh
Q 024842          179 EPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF------ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQ  252 (262)
Q Consensus       179 ~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~------~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g  252 (262)
                      +  ++||||||+||+++.++    .++|+|||++.......      ..++..|.+||.+....     .....|+|++|
T Consensus       126 ~--i~H~dikp~Nil~~~~~----~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-----~~~~~Di~slG  194 (269)
T 4hcu_A          126 C--VIHRDLAARNCLVGENQ----VIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSR-----YSSKSDVWSFG  194 (269)
T ss_dssp             T--CCCSCCCGGGEEECGGG----CEEECCTTGGGGBCCHHHHSTTSTTCCGGGCCHHHHHHCC-----CCHHHHHHHHH
T ss_pred             C--eecCCcchheEEEcCCC----CEEeccccccccccccccccccCcccccccCCHHHhcCCC-----CCchhhhHHHH
Confidence            9  99999999999998776    69999999998654321      23344577776442211     11234666666


Q ss_pred             eeheeccc
Q 024842          253 ILMRELMF  260 (262)
Q Consensus       253 ~~~~~l~~  260 (262)
                      +++++|++
T Consensus       195 ~~l~~ll~  202 (269)
T 4hcu_A          195 VLMWEVFS  202 (269)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHhc
Confidence            66666666

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}

Probab=100.00  E-value=1.5e-34  Score=250.13  Aligned_cols=192  Identities=22%  Similarity=0.302  Sum_probs=156.9

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc---hHHHHHHHHHHHHhhh
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN---NEQLEMVREEIRVSSL  101 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~---~~~~~~~~~E~~~l~~  101 (262)
                      .++|.+.+.||+|+||.||+|++..+++                      .||+|++....   ....+.+.+|+.+++.
T Consensus        15 ~~~Y~l~~~LG~G~fg~V~~a~~~~~g~----------------------~vAvK~i~~~~~~~~~~~~~~~~Ei~~l~~   72 (476)
T 2y94_A           15 IGHYILGDTLGVGTFGKVKVGKHELTGH----------------------KVAVKILNRQKIRSLDVVGKIRREIQNLKL   72 (476)
T ss_dssp             ETTEEEEEEEECCSSSCEEEEEETTTCC----------------------EEEEEEEEHHHHHHTTTHHHHHHHHHHHTT
T ss_pred             ecCEEEEEEEeeCCCeEEEEEEECCCCC----------------------EEEEEEEEhhhccCHHHHHHHHHHHHHHHh
Confidence            4689999999999999999999987655                      57777664332   2234678899999999


Q ss_pred             CCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCC
Q 024842          102 FSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPP  181 (262)
Q Consensus       102 l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~  181 (262)
                      ++||||+++++++          ......+++|||+.+++|.+++.    ....+++..++.++.|++.||.|||+.+  
T Consensus        73 l~HpnIv~l~~~~----------~~~~~~~lv~E~~~gg~L~~~l~----~~~~l~~~~~~~i~~qi~~aL~~LH~~g--  136 (476)
T 2y94_A           73 FRHPHIIKLYQVI----------STPSDIFMVMEYVSGGELFDYIC----KNGRLDEKESRRLFQQILSGVDYCHRHM--  136 (476)
T ss_dssp             CCCTTBCCEEEEE----------ECSSEEEEEEECCSSEEHHHHTT----SSSSCCHHHHHHHHHHHHHHHHHHHTTT--
T ss_pred             CCCCCCCcEEEEE----------EECCEEEEEEeCCCCCcHHHHHH----hcCCCCHHHHHHHHHHHHHHHHHHHHCC--
Confidence            9999999999987          33567999999999999999885    4566999999999999999999999999  


Q ss_pred             eeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC----ccCcccCCcccchhhhhhhhhhhhhcCcccchheehee
Q 024842          182 YAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRE  257 (262)
Q Consensus       182 ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~  257 (262)
                      |+||||||+|||++.++    .+||+|||++.......    ..+++.|.+||-+..-.+.    ....|+||+|+++|+
T Consensus       137 ivHrDLkp~NIll~~~~----~vkL~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~----~~~~DiwSlGvil~e  208 (476)
T 2y94_A          137 VVHRDLKPENVLLDAHM----NAKIADFGLSNMMSDGEFLRTSCGSPNYAAPEVISGRLYA----GPEVDIWSSGVILYA  208 (476)
T ss_dssp             EECSCCSGGGEEECTTC----CEEECCCSSCEECCTTCCBCCCCSCSTTCCHHHHTTCCBC----SHHHHHHHHHHHHHH
T ss_pred             CCcccccHHHEEEecCC----CeEEEeccchhhccccccccccCCCcCeEChhhccCCCCC----CCcceehhhHHHHHH
Confidence            99999999999998776    69999999998765432    3577788888765432211    123688888888888


Q ss_pred             cccCC
Q 024842          258 LMFGR  262 (262)
Q Consensus       258 l~~G~  262 (262)
                      |++|+
T Consensus       209 lltG~  213 (476)
T 2y94_A          209 LLCGT  213 (476)
T ss_dssp             HHHSS
T ss_pred             HhhCC
Confidence            88875

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}

Probab=100.00  E-value=2.2e-34  Score=238.70  Aligned_cols=202  Identities=21%  Similarity=0.305  Sum_probs=151.6

Q ss_pred             CceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc-chHHHHHHHHHHHHhhhCCC
Q 024842           26 NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ-NNEQLEMVREEIRVSSLFSH  104 (262)
Q Consensus        26 ~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~-~~~~~~~~~~E~~~l~~l~h  104 (262)
                      ++|++.+.||+|+||.||+|++..+++                      .||+|++... .....+.+.+|+.+++.++|
T Consensus         6 ~~y~~~~~lG~G~~g~V~~a~~~~~~~----------------------~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h   63 (332)
T 3qd2_B            6 TDFEPIQCMGRGGFGVVFEAKNKVDDC----------------------NYAIKRIRLPNRELAREKVMREVKALAKLEH   63 (332)
T ss_dssp             HHEEEEEEEECC-CSEEEEEEETTTCC----------------------EEEEEEEECCSTTTHHHHHHHHHHHHTSCCC
T ss_pred             hcCceeeEecCCCCeEEEEEEEcCCCc----------------------EEEEEEeecCCchhHHHHHHHHHHHHHhCCC
Confidence            589999999999999999999886655                      6788877543 33345778999999999999


Q ss_pred             CCccchhhhhHHHhh-----------------------------------------------hccCCCCcceeEEEEeec
Q 024842          105 RNLLPLLDHAIIAVK-----------------------------------------------ANQEGSWKHEAYLLFPVH  137 (262)
Q Consensus       105 ~~i~~~~~~~~~~~~-----------------------------------------------~~~~~~~~~~~~~v~~~~  137 (262)
                      |||+++++++.....                                               ...........+++||++
T Consensus        64 pniv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~  143 (332)
T 3qd2_B           64 PGIVRYFNAWLETPPEKWQEEMDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLC  143 (332)
T ss_dssp             TTBCCEEEEEEECCSCHHHHHHHC--------------------------------------------CCCEEEEEEECC
T ss_pred             CCEeeEEEEEEEeccchhhhhhhhhhhccccccccccCCCcccccccceeeccccCcccccccccCCCCCceEEEEEEec
Confidence            999999987632100                                               000011223489999999


Q ss_pred             CCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccc
Q 024842          138 LDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQS  217 (262)
Q Consensus       138 ~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~  217 (262)
                      .+++|.+++..... ....++..++.++.|++.||.|||+++  |+||||||+||+++.++    .+||+|||++.....
T Consensus       144 ~~~~L~~~~~~~~~-~~~~~~~~~~~i~~qi~~aL~~LH~~~--ivH~Dlkp~NIll~~~~----~~kL~DfG~a~~~~~  216 (332)
T 3qd2_B          144 RKENLKDWMNRRCS-LEDREHGVCLHIFIQIAEAVEFLHSKG--LMHRDLKPSNIFFTMDD----VVKVGDFGLVTAMDQ  216 (332)
T ss_dssp             CSSCHHHHHHTCCS-GGGSCHHHHHHHHHHHHHHHHHHHHTT--EECCCCCGGGEEECTTC----CEEECCCTTCEECSC
T ss_pred             CCCCHHHHHhcccC-ccchhhHHHHHHHHHHHHHHHHHHhCC--eeecCCCcccEEEeCCC----CEEEeecCccccccc
Confidence            99999999874322 233677789999999999999999999  99999999999998776    699999999987654


Q ss_pred             cC-----------------ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecccC
Q 024842          218 KF-----------------ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMFG  261 (262)
Q Consensus       218 ~~-----------------~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~G  261 (262)
                      ..                 ..+++.|.+||.+....     .....|+||+|+++++|++|
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-----~~~~~Di~slG~il~el~~~  272 (332)
T 3qd2_B          217 DEEEQTVLTPMPAYATHTGQVGTKLYMSPEQIHGNN-----YSHKVDIFSLGLILFELLYS  272 (332)
T ss_dssp             C--------------CCCSCC-CGGGSCHHHHHCCC-----CCTHHHHHHHHHHHHHHHSC
T ss_pred             chhhccccccccccccccccCCCcCccChHHhcCCC-----CcchhhHHHHHHHHHHHHHc
Confidence            32                 24667777777553321     12236888888888888876

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*

Probab=100.00  E-value=1.1e-34  Score=238.98  Aligned_cols=196  Identities=21%  Similarity=0.294  Sum_probs=150.5

Q ss_pred             cCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc---chHHHHHHHHHHHHhh
Q 024842           24 NENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ---NNEQLEMVREEIRVSS  100 (262)
Q Consensus        24 ~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~---~~~~~~~~~~E~~~l~  100 (262)
                      ..++|++.+.||+|+||.||+|++..+++                      .||+|++...   .......+.+|+.+++
T Consensus        10 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~----------------------~vavK~~~~~~~~~~~~~~~~~~E~~~l~   67 (311)
T 3ork_A           10 LSDRYELGEILGFGGMSEVHLARDLRDHR----------------------DVAVKVLRADLARDPSFYLRFRREAQNAA   67 (311)
T ss_dssp             ETTTEEEEEEEEECSSEEEEEEEETTTTE----------------------EEEEEEECTTTTTSHHHHHHHHHHHTTCC
T ss_pred             ecCcEEEEEEEccCCCEEEEEEEECCCCc----------------------eEEEEEeCccccCCHHHHHHHHHHHHHHH
Confidence            36799999999999999999999877655                      5777766543   3444567889999999


Q ss_pred             hCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCC
Q 024842          101 LFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEP  180 (262)
Q Consensus       101 ~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~  180 (262)
                      .++||||+++++++..      ........|++|||+.+++|.+++.    ....+++..++.++.|++.||.|||+++ 
T Consensus        68 ~l~hp~iv~~~~~~~~------~~~~~~~~~lv~e~~~g~~L~~~l~----~~~~~~~~~~~~~~~qi~~~l~~lH~~~-  136 (311)
T 3ork_A           68 ALNHPAIVAVYDTGEA------ETPAGPLPYIVMEYVDGVTLRDIVH----TEGPMTPKRAIEVIADACQALNFSHQNG-  136 (311)
T ss_dssp             CCCCTTBCCEEEEEEE------EETTEEEEEEEEECCCEEEHHHHHH----HHCSCCHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred             cCCCCCcceEEEeeec------cCCCCcccEEEEecCCCCCHHHHHH----hcCCCCHHHHHHHHHHHHHHHHHHHHCC-
Confidence            9999999999988732      1111234599999999999999886    3456999999999999999999999999 


Q ss_pred             CeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC--------ccCcccCCcccchhhhhhhhhhhhhcCcccchh
Q 024842          181 PYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF--------ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQ  252 (262)
Q Consensus       181 ~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~--------~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g  252 (262)
                       ++||||||+||+++.++    .+||+|||++.......        ..++..|.+||.+..-.     .....|+|++|
T Consensus       137 -ivH~dlkp~Nil~~~~~----~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-----~~~~~Di~slG  206 (311)
T 3ork_A          137 -IIHRDVKPANIMISATN----AVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARGDS-----VDARSDVYSLG  206 (311)
T ss_dssp             -CCCCCCCGGGEEEETTS----CEEECCCSCC------------------CCTTCCHHHHHTCC-----CCHHHHHHHHH
T ss_pred             -CCcCCCCHHHEEEcCCC----CEEEeeccCcccccccccccccccccCcCcccCCHHHhcCCC-----CCchHhHHHHH
Confidence             99999999999998776    69999999998654321        24677888887653322     11235788888


Q ss_pred             eeheecccCC
Q 024842          253 ILMRELMFGR  262 (262)
Q Consensus       253 ~~~~~l~~G~  262 (262)
                      +++|+|++|+
T Consensus       207 ~~l~~ll~g~  216 (311)
T 3ork_A          207 CVLYEVLTGE  216 (311)
T ss_dssp             HHHHHHHHSS
T ss_pred             HHHHHHHhCC
Confidence            8888888774

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=100.00  E-value=2.8e-34  Score=244.06  Aligned_cols=209  Identities=19%  Similarity=0.247  Sum_probs=160.1

Q ss_pred             eeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc-hHHHHHHHHHHHHh
Q 024842           21 VWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN-NEQLEMVREEIRVS   99 (262)
Q Consensus        21 ~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~-~~~~~~~~~E~~~l   99 (262)
                      ....+++|++.+.||+|+||.||+|++..+++                      .||+|++.... ....+.+.+|+.++
T Consensus         4 ~~~~~~~y~i~~~LG~G~~g~Vy~~~~~~~~~----------------------~vaiK~~~~~~~~~~~~~~~~E~~~l   61 (396)
T 4eut_A            4 QSTSNHLWLLSDILGQGATANVFRGRHKKTGD----------------------LFAIKVFNNISFLRPVDVQMREFEVL   61 (396)
T ss_dssp             EECSSEEEEEEEEEEECSSEEEEEEEETTTCC----------------------EEEEEEECGGGGGSCHHHHHHHHHHH
T ss_pred             CCCCCCceEEEEEEEcCCCeEEEEEEECCCCc----------------------EEEEEEeccccccchHHHHHHHHHHH
Confidence            34557899999999999999999999987655                      57777665432 22246677899999


Q ss_pred             hhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCC
Q 024842          100 SLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLE  179 (262)
Q Consensus       100 ~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~  179 (262)
                      +.++||||+++++++.        .......+++|||+.+++|.+++..... ...+++..++.++.|++.||.|||+++
T Consensus        62 ~~l~hpnIv~~~~~~~--------~~~~~~~~lv~e~~~~g~L~~~l~~~~~-~~~l~~~~~~~i~~qi~~aL~~LH~~~  132 (396)
T 4eut_A           62 KKLNHKNIVKLFAIEE--------ETTTRHKVLIMEFCPCGSLYTVLEEPSN-AYGLPESEFLIVLRDVVGGMNHLRENG  132 (396)
T ss_dssp             HHCCCTTBCCEEEEEE--------CTTTCCEEEEECCCTTEEHHHHTTSGGG-TTCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HhcCCCCCCeEEEeec--------cCCCCeeEEEEecCCCCCHHHHHHhhhc-ccCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            9999999999998873        1334468999999999999998863322 233899999999999999999999999


Q ss_pred             CCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC----ccCcccCCcccchhhhhhh---hhhhhhcCcccchh
Q 024842          180 PPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF----ALGQRRYSCRNGLLSIVLH---LSELLSCGTVRVIQ  252 (262)
Q Consensus       180 ~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~~~~~~~~d~~s~g~~---~~e~~~~~~v~~~g  252 (262)
                        |+||||||+|||+..+.+....+||+|||++.......    ..++..|.+||.+......   ........|+||+|
T Consensus       133 --ivH~Dlkp~NIll~~~~~~~~~~kL~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwSlG  210 (396)
T 4eut_A          133 --IVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELEDDEQFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIG  210 (396)
T ss_dssp             --EECCCCCGGGEEEEECTTSCEEEEECCGGGCEECCCGGGSSCSSSCCTTCCHHHHHHHCC--CHHHHHHHHHHHHHHH
T ss_pred             --EEECCcCHHHEEEeecCCCceeEEEecCCCceEccCCCccccccCCccccCHHHhhccccccccccCCCcHHHHHHHH
Confidence              99999999999994333333379999999998765432    3577888888866432100   01222346899999


Q ss_pred             eeheecccCC
Q 024842          253 ILMRELMFGR  262 (262)
Q Consensus       253 ~~~~~l~~G~  262 (262)
                      +++|+|++|+
T Consensus       211 ~il~el~tg~  220 (396)
T 4eut_A          211 VTFYHAATGS  220 (396)
T ss_dssp             HHHHHHHHSS
T ss_pred             HHHHHHHHCC
Confidence            9999999885

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*

Probab=100.00  E-value=6.4e-34  Score=231.30  Aligned_cols=200  Identities=17%  Similarity=0.240  Sum_probs=157.1

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc--chHHHHHHHHHHHHhhhC
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ--NNEQLEMVREEIRVSSLF  102 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~--~~~~~~~~~~E~~~l~~l  102 (262)
                      .++|++.+.||+|+||.||+|.+..+++                      .+++|.+...  .......+.+|+..+..+
T Consensus        10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~----------------------~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l   67 (289)
T 1x8b_A           10 TTEFHELEKIGSGEFGSVFKCVKRLDGC----------------------IYAIKRSKKPLAGSVDEQNALREVYAHAVL   67 (289)
T ss_dssp             HHHEEEEEEEEEETTEEEEEEEETTTCC----------------------EEEEEEEECCCTTSHHHHHHHHHHHHHHHS
T ss_pred             cchhhhhhhhcCCCceEEEEEEEcCCCc----------------------eEEEEEecccccccHHHHHHHHHHHHHHHh
Confidence            4689999999999999999999876655                      6777776543  334456778899999888


Q ss_pred             -CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCC
Q 024842          103 -SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPP  181 (262)
Q Consensus       103 -~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~  181 (262)
                       +||||+++++++.          ..+..+++||++.+++|.+++.........+++..++.++.|++.||.|||+++  
T Consensus        68 ~~h~~iv~~~~~~~----------~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~--  135 (289)
T 1x8b_A           68 GQHSHVVRYFSAWA----------EDDHMLIQNEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLRYIHSMS--  135 (289)
T ss_dssp             CSCTTBCCEEEEEE----------ETTEEEEEEECCTTCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHTT--
T ss_pred             CCCCCeeeeeeeee----------cCCeEEEEEEecCCCcHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHHhCC--
Confidence             8999999999873          356799999999999999998765554567999999999999999999999999  


Q ss_pred             eeecCCCCCcEEEecCCC---------------CCCceEEeeccceeeccccC-ccCcccCCcccchhhhhhhhhhhhhc
Q 024842          182 YAHNDVKPGNILITCRKG---------------QPPLAILMDFGSARPAQSKF-ALGQRRYSCRNGLLSIVLHLSELLSC  245 (262)
Q Consensus       182 ivH~dikp~Nill~~~~~---------------~~~~~kl~Dfg~a~~~~~~~-~~~~~~~~~~~d~~s~g~~~~e~~~~  245 (262)
                      |+||||||+||+++.++.               ....++|+|||++....... ..++..|.+||.+....    .....
T Consensus       136 ivH~Dikp~NIl~~~~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~gt~~y~aPE~~~~~~----~~~~~  211 (289)
T 1x8b_A          136 LVHMDIKPSNIFISRTSIPNAASEEGDEDDWASNKVMFKIGDLGHVTRISSPQVEEGDSRFLANEVLQENY----THLPK  211 (289)
T ss_dssp             EECSCCSGGGEEEC--------------------CCCEEECCCTTCEETTCSCCCCCCGGGCCHHHHTTCC----TTHHH
T ss_pred             EeecCCCHHHEEEcCCCCCcccccccccccccCCceEEEEcccccccccCCccccCCCccccChhHhcCCC----CCCch
Confidence            999999999999985541               23369999999998876443 35777788887654321    11124


Q ss_pred             CcccchheeheecccCC
Q 024842          246 GTVRVIQILMRELMFGR  262 (262)
Q Consensus       246 ~~v~~~g~~~~~l~~G~  262 (262)
                      .||||+|+++++|++|+
T Consensus       212 ~Di~slG~il~~l~~~~  228 (289)
T 1x8b_A          212 ADIFALALTVVCAAGAE  228 (289)
T ss_dssp             HHHHHHHHHHHHHTTCC
T ss_pred             hhHHHHHHHHHHHhcCC
Confidence            68888888888888774

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}

Probab=100.00  E-value=1.9e-34  Score=234.64  Aligned_cols=197  Identities=23%  Similarity=0.322  Sum_probs=153.8

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc-hHHHHHHHHHHHHhhhCC
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN-NEQLEMVREEIRVSSLFS  103 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~-~~~~~~~~~E~~~l~~l~  103 (262)
                      .++|.+.+.||+|+||.||+|++..+++                      .+++|++.... ....+.+.+|+.+++.++
T Consensus        21 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~----------------------~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~   78 (285)
T 3is5_A           21 DDLFIFKRKLGSGAFGDVHLVEERSSGL----------------------ERVIKTINKDRSQVPMEQIEAEIEVLKSLD   78 (285)
T ss_dssp             HHHEEEEEEEEECSSCEEEEEEETTTCC----------------------EEEEEEEEGGGCCSCHHHHHHHHHHHHTCC
T ss_pred             hhheeecceeccCCCeEEEEEEEccCCc----------------------eEEEEEeeccccchhHHHHHHHHHHHHhCC
Confidence            3689999999999999999999877655                      56666654432 223567889999999999


Q ss_pred             CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCee
Q 024842          104 HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYA  183 (262)
Q Consensus       104 h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~iv  183 (262)
                      ||||+++++++          ......+++||++.+++|.+.+.........+++..++.++.|++.||.|||+.+  |+
T Consensus        79 hp~iv~~~~~~----------~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~--iv  146 (285)
T 3is5_A           79 HPNIIKIFEVF----------EDYHNMYIVMETCEGGELLERIVSAQARGKALSEGYVAELMKQMMNALAYFHSQH--VV  146 (285)
T ss_dssp             CTTBCCEEEEE----------ECSSEEEEEECCCSCCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHTT--CC
T ss_pred             CchHHhHHHhe----------ecCCeEEEEEEeCCCCcHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHHHHHhCC--EE
Confidence            99999999987          3456789999999999999988766555677999999999999999999999999  99


Q ss_pred             ecCCCCCcEEEecCCCCCCceEEeeccceeecccc----CccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecc
Q 024842          184 HNDVKPGNILITCRKGQPPLAILMDFGSARPAQSK----FALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELM  259 (262)
Q Consensus       184 H~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~----~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~  259 (262)
                      ||||||+||+++.++ ....+||+|||++......    ...++..|.+||.+..      ......|+|++|+++++|+
T Consensus       147 H~dikp~NIl~~~~~-~~~~~kl~Dfg~a~~~~~~~~~~~~~~t~~y~aPE~~~~------~~~~~~Di~slG~il~~ll  219 (285)
T 3is5_A          147 HKDLKPENILFQDTS-PHSPIKIIDFGLAELFKSDEHSTNAAGTALYMAPEVFKR------DVTFKCDIWSAGVVMYFLL  219 (285)
T ss_dssp             CCCCSGGGEEESSSS-TTCCEEECCCCCCCC----------CTTGGGCCHHHHTT------CCCHHHHHHHHHHHHHHHH
T ss_pred             ECCCCHHHEEEecCC-CCCCEEEEeeecceecCCcccCcCcccccCcCChHHhcc------CCCcccCeehHHHHHHHHH
Confidence            999999999996432 1226999999999865433    2356777888875421      1222457888888888877


Q ss_pred             cCC
Q 024842          260 FGR  262 (262)
Q Consensus       260 ~G~  262 (262)
                      +|+
T Consensus       220 ~g~  222 (285)
T 3is5_A          220 TGC  222 (285)
T ss_dssp             HSS
T ss_pred             hCC
Confidence            774

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*

Probab=100.00  E-value=9e-34  Score=228.47  Aligned_cols=193  Identities=21%  Similarity=0.262  Sum_probs=151.0

Q ss_pred             ceeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHh
Q 024842           20 DVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVS   99 (262)
Q Consensus        20 ~~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l   99 (262)
                      ...+..++|++.+.||+|+||.||+|++..+                       ..+|+|.+...... .+.+.+|+.++
T Consensus         2 ~~~l~~~~y~~~~~lg~G~~g~V~~~~~~~~-----------------------~~vavK~~~~~~~~-~~~~~~E~~~l   57 (268)
T 3sxs_A            2 HMELKREEITLLKELGSGQFGVVKLGKWKGQ-----------------------YDVAVKMIKEGSMS-EDEFFQEAQTM   57 (268)
T ss_dssp             TTBCCGGGEEEEEEEEEETTEEEEEEEETTT-----------------------EEEEEEEECBTTBC-HHHHHHHHHHH
T ss_pred             ceEechhheeeeeeeccCCCceEEEEEecCc-----------------------eeEEEEEeccCCCc-HHHHHHHHHHH
Confidence            3456788999999999999999999987632                       35788877654332 35688999999


Q ss_pred             hhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCC
Q 024842          100 SLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLE  179 (262)
Q Consensus       100 ~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~  179 (262)
                      +.++||||+++++++          ......+++||++.+++|.+++..   ....+++..++.++.|++.||.|||+.+
T Consensus        58 ~~l~h~~i~~~~~~~----------~~~~~~~lv~e~~~~~~L~~~l~~---~~~~~~~~~~~~i~~qi~~~l~~lH~~~  124 (268)
T 3sxs_A           58 MKLSHPKLVKFYGVC----------SKEYPIYIVTEYISNGCLLNYLRS---HGKGLEPSQLLEMCYDVCEGMAFLESHQ  124 (268)
T ss_dssp             HHCCCTTBCCEEEEE----------CSSSSEEEEEECCTTCBHHHHHHH---HGGGCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HhCCCCCEeeEEEEE----------ccCCceEEEEEccCCCcHHHHHHH---cCCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            999999999999987          446678999999999999998863   2345999999999999999999999999


Q ss_pred             CCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC------ccCcccCCcccchhhhhhhhhhhhhcCcccchhe
Q 024842          180 PPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF------ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQI  253 (262)
Q Consensus       180 ~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~------~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~  253 (262)
                        ++||||||+||+++.++    .++|+|||++.......      ..++..|.+||.+....     .....|+|++|+
T Consensus       125 --i~H~dikp~Nil~~~~~----~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-----~~~~~Di~slG~  193 (268)
T 3sxs_A          125 --FIHRDLAARNCLVDRDL----CVKVSDFGMTRYVLDDQYVSSVGTKFPVKWSAPEVFHYFK-----YSSKSDVWAFGI  193 (268)
T ss_dssp             --EEESSCSGGGEEECTTC----CEEECCTTCEEECCTTCEEECCSCCCCGGGCCHHHHHHSE-----EETTHHHHHHHH
T ss_pred             --eecCCcCcceEEECCCC----CEEEccCccceecchhhhhcccCCCcCcccCCHHHHhccC-----CchhhhhHHHHH
Confidence              99999999999998776    69999999998765432      12334577776442211     122356777777


Q ss_pred             eheeccc
Q 024842          254 LMRELMF  260 (262)
Q Consensus       254 ~~~~l~~  260 (262)
                      ++++|++
T Consensus       194 il~~l~~  200 (268)
T 3sxs_A          194 LMWEVFS  200 (268)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHc
Confidence            7777766

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*

Probab=100.00  E-value=4.4e-34  Score=231.93  Aligned_cols=198  Identities=19%  Similarity=0.247  Sum_probs=141.4

Q ss_pred             CceeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc-chHHHHHHHHHHH
Q 024842           19 GDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ-NNEQLEMVREEIR   97 (262)
Q Consensus        19 ~~~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~-~~~~~~~~~~E~~   97 (262)
                      .+..+..++|++.+.||+|+||.||+|.+..++.                   ....+++|..... .....+.+.+|+.
T Consensus         8 ~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~-------------------~~~~vaiK~~~~~~~~~~~~~~~~e~~   68 (281)
T 1mp8_A            8 RDYEIQRERIELGRCIGEGQFGDVHQGIYMSPEN-------------------PALAVAIKTCKNCTSDSVREKFLQEAL   68 (281)
T ss_dssp             -CCBCCGGGEEEEEEEEECSSSEEEEEEECCC---------------------CCEEEEEEECTTTTSHHHHHHHHHHHH
T ss_pred             cceEEehHHeEEEeEeeecCCeeEEEEEEecCCC-------------------CceEEEEEeccccCCHHHHHHHHHHHH
Confidence            3455668899999999999999999999875433                   1235788876653 3444577899999


Q ss_pred             HhhhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHc
Q 024842           98 VSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHS  177 (262)
Q Consensus        98 ~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~  177 (262)
                      +++.++||||+++++++.           ....+++||++.+++|.+++..   ....+++..++.++.|++.||.|||+
T Consensus        69 ~l~~l~h~~iv~~~~~~~-----------~~~~~lv~e~~~~~~L~~~l~~---~~~~~~~~~~~~~~~qi~~~l~~lH~  134 (281)
T 1mp8_A           69 TMRQFDHPHIVKLIGVIT-----------ENPVWIIMELCTLGELRSFLQV---RKYSLDLASLILYAYQLSTALAYLES  134 (281)
T ss_dssp             HHHTCCCTTBCCEEEEEC-----------SSSCEEEEECCTTEEHHHHHHH---TTTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhCCCCccceEEEEEc-----------cCccEEEEecCCCCCHHHHHHh---cCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999998762           3458999999999999998863   33459999999999999999999999


Q ss_pred             CCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC------ccCcccCCcccchhhhhhhhhhhhhcCcccch
Q 024842          178 LEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF------ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVI  251 (262)
Q Consensus       178 ~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~------~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~  251 (262)
                      .+  ++||||||+||+++.++    .+||+|||++.......      ..++..|.+||.+..-.     .....|+||+
T Consensus       135 ~~--i~H~dlkp~Nil~~~~~----~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-----~~~~~Di~sl  203 (281)
T 1mp8_A          135 KR--FVHRDIAARNVLVSSND----CVKLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINFRR-----FTSASDVWMF  203 (281)
T ss_dssp             TT--CCCSCCSGGGEEEEETT----EEEECC-------------------CCGGGCCHHHHHHCC-----CSHHHHHHHH
T ss_pred             CC--eecccccHHHEEECCCC----CEEECccccccccCcccccccccCCCcccccChhhcccCC-----CCCccCchHH
Confidence            98  99999999999998776    79999999998764332      12344566666332111     1112455555


Q ss_pred             heeheeccc
Q 024842          252 QILMRELMF  260 (262)
Q Consensus       252 g~~~~~l~~  260 (262)
                      |+++|+|++
T Consensus       204 G~~l~ell~  212 (281)
T 1mp8_A          204 GVCMWEILM  212 (281)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHh
Confidence            555555553

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*

Probab=100.00  E-value=4.9e-34  Score=236.04  Aligned_cols=188  Identities=18%  Similarity=0.269  Sum_probs=152.5

Q ss_pred             ceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCCCCC
Q 024842           27 RYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSHRN  106 (262)
Q Consensus        27 ~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~h~~  106 (262)
                      .|+..+.||+|+||.||+|++..+++                      .||+|++........+.+.+|+.+++.++|||
T Consensus        46 ~~~~~~~lg~G~~g~V~~a~~~~~g~----------------------~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~n  103 (321)
T 2c30_A           46 LLDSYVKIGEGSTGIVCLAREKHSGR----------------------QVAVKMMDLRKQQRRELLFNEVVIMRDYQHFN  103 (321)
T ss_dssp             HEEEEEEEEEETTEEEEEEEETTTCC----------------------EEEEEEEETTTCCSHHHHHHHHHHHTTCCCTT
T ss_pred             hhhccEEeccCCCeEEEEEEECCCCc----------------------EEEEEEEeccchhHHHHHHHHHHHHHhCCCCC
Confidence            58889999999999999999876554                      67888776555445577889999999999999


Q ss_pred             ccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeeecC
Q 024842          107 LLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHND  186 (262)
Q Consensus       107 i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~d  186 (262)
                      |+++++++.          .....+++|||+.+++|.+++.     ...+++..++.++.|++.||.|||+.+  ++|||
T Consensus       104 iv~~~~~~~----------~~~~~~lv~e~~~~~~L~~~l~-----~~~l~~~~~~~i~~qi~~~L~~LH~~~--ivH~D  166 (321)
T 2c30_A          104 VVEMYKSYL----------VGEELWVLMEFLQGGALTDIVS-----QVRLNEEQIATVCEAVLQALAYLHAQG--VIHRD  166 (321)
T ss_dssp             BCCEEEEEE----------ETTEEEEEECCCCSCBHHHHHT-----TCCCCHHHHHHHHHHHHHHHHHHHHTT--EECCC
T ss_pred             cceEEEEEE----------ECCEEEEEEecCCCCCHHHHHH-----hcCCCHHHHHHHHHHHHHHHHHHHHCC--eecCC
Confidence            999999873          3567999999999999999874     345999999999999999999999998  99999


Q ss_pred             CCCCcEEEecCCCCCCceEEeeccceeeccccC-----ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecccC
Q 024842          187 VKPGNILITCRKGQPPLAILMDFGSARPAQSKF-----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMFG  261 (262)
Q Consensus       187 ikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~G  261 (262)
                      |||+||+++.++    .+||+|||++.......     ..+++.|.+||.+....     .....|+||+|+++++|++|
T Consensus       167 lkp~NIll~~~~----~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-----~~~~~Dv~slG~il~el~~g  237 (321)
T 2c30_A          167 IKSDSILLTLDG----RVKLSDFGFCAQISKDVPKRKSLVGTPYWMAPEVISRSL-----YATEVDIWSLGIMVIEMVDG  237 (321)
T ss_dssp             CSGGGEEECTTC----CEEECCCTTCEECCSSSCCBCCCCSCGGGCCHHHHTTCC-----BCTHHHHHHHHHHHHHHHHS
T ss_pred             CCHHHEEECCCC----cEEEeeeeeeeecccCccccccccCCccccCHhhhcCCC-----CCchhhHHHHHHHHHHHHhC
Confidence            999999998776    69999999998765432     35677788777553221     11235788888888888777


Q ss_pred             C
Q 024842          262 R  262 (262)
Q Consensus       262 ~  262 (262)
                      +
T Consensus       238 ~  238 (321)
T 2c30_A          238 E  238 (321)
T ss_dssp             S
T ss_pred             C
Confidence            4

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*

Probab=100.00  E-value=9.4e-34  Score=230.19  Aligned_cols=194  Identities=22%  Similarity=0.328  Sum_probs=155.8

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc--chHHHHHHHHHHHHhhhC
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ--NNEQLEMVREEIRVSSLF  102 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~--~~~~~~~~~~E~~~l~~l  102 (262)
                      .++|++.+.||+|+||.||+|.+..+++                      .+++|.+...  .....+.+.+|+.+++.+
T Consensus         5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~----------------------~vavK~~~~~~~~~~~~~~~~~e~~~l~~l   62 (284)
T 3kk8_A            5 SDNYDVKEELGKGAFSVVRRCVHKTTGL----------------------EFAAKIINTKKLSARDFQKLEREARICRKL   62 (284)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTCC----------------------EEEEEEEEGGGCCHHHHHHHHHHHHHHHHC
T ss_pred             hhhhhhhhhhcCcCCeEEEEEEEcCCCc----------------------eEEEEEeecccCCHHHHHHHHHHHHHHHHc
Confidence            6799999999999999999999887655                      5777766443  344457788999999999


Q ss_pred             CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCe
Q 024842          103 SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPY  182 (262)
Q Consensus       103 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~i  182 (262)
                      +||||+++++++          ......+++||++.+++|.+.+.    ....+++..++.++.|++.||.|||+++  +
T Consensus        63 ~h~~i~~~~~~~----------~~~~~~~~v~e~~~~~~l~~~~~----~~~~~~~~~~~~~~~~i~~~l~~lH~~~--i  126 (284)
T 3kk8_A           63 QHPNIVRLHDSI----------QEESFHYLVFDLVTGGELFEDIV----AREFYSEADASHCIQQILESIAYCHSNG--I  126 (284)
T ss_dssp             CCTTBCCEEEEE----------ECSSEEEEEECCCCSCBHHHHHH----HHSSCCHHHHHHHHHHHHHHHHHHHHTT--E
T ss_pred             CCCCcCeEEEEE----------EcCCEEEEEEecCCCCCHHHHHH----hcCCCCHHHHHHHHHHHHHHHHHHHHCC--c
Confidence            999999999987          34567899999999999988876    3455999999999999999999999999  9


Q ss_pred             eecCCCCCcEEEecCCCCCCceEEeeccceeeccccC----ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheec
Q 024842          183 AHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMREL  258 (262)
Q Consensus       183 vH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l  258 (262)
                      +||||||+||+++.++. ...+||+|||++.......    ..+++.|.+||.+..-.+     ....|+|++|+++++|
T Consensus       127 ~H~dikp~Nil~~~~~~-~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~-----~~~~Di~slG~~l~~l  200 (284)
T 3kk8_A          127 VHRNLKPENLLLASKAK-GAAVKLADFGLAIEVNDSEAWHGFAGTPGYLSPEVLKKDPY-----SKPVDIWACGVILYIL  200 (284)
T ss_dssp             ECSCCCGGGEEESSSST-TCCEEECCCTTCEECCSSCBCCCSCSCGGGCCHHHHTTCCB-----CTHHHHHHHHHHHHHH
T ss_pred             CcCCCCHHHEEEecCCC-CCcEEEeeceeeEEcccCccccCCCCCcCCcCchhhcCCCC-----CcccchHHHHHHHHHH
Confidence            99999999999986652 2359999999998765443    256677777775533221     2236788888888888


Q ss_pred             ccCC
Q 024842          259 MFGR  262 (262)
Q Consensus       259 ~~G~  262 (262)
                      ++|+
T Consensus       201 ~~g~  204 (284)
T 3kk8_A          201 LVGY  204 (284)
T ss_dssp             HHSS
T ss_pred             HHCC
Confidence            7774

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*

Probab=100.00  E-value=6.6e-34  Score=244.29  Aligned_cols=197  Identities=22%  Similarity=0.286  Sum_probs=150.4

Q ss_pred             ecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc--chHHHHHHHHHHHHhh
Q 024842           23 INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ--NNEQLEMVREEIRVSS  100 (262)
Q Consensus        23 ~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~--~~~~~~~~~~E~~~l~  100 (262)
                      ...++|++.+.||+|+||.||+|++..+++                      .||+|++...  .....+.+.+|+.+++
T Consensus        23 ~i~~~y~~~~~lG~G~~g~V~~a~~~~~~~----------------------~vAiK~~~~~~~~~~~~~~~~~E~~~l~   80 (432)
T 3n9x_A           23 HVPDNYIIKHLIGRGSYGYVYLAYDKNTEK----------------------NVAIKKVNRMFEDLIDCKRILREITILN   80 (432)
T ss_dssp             CCCTTEEEEEEEEEETTEEEEEEEETTTTE----------------------EEEEEEECSTTTSHHHHHHHHHHHHHHH
T ss_pred             eecCCEEEEEEEeecCCEEEEEEEECCCCc----------------------EEEEEEeCchhcChHHHHHHHHHHHHHH
Confidence            346799999999999999999999987655                      5777776542  4445678899999999


Q ss_pred             hCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCC
Q 024842          101 LFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEP  180 (262)
Q Consensus       101 ~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~  180 (262)
                      .++||||+++++++...     ........|++||++. ++|.+++.    ....+++..++.++.||+.||.|||+.+ 
T Consensus        81 ~l~h~nIv~l~~~~~~~-----~~~~~~~~~lv~e~~~-~~L~~~~~----~~~~l~~~~~~~i~~qil~aL~~LH~~g-  149 (432)
T 3n9x_A           81 RLKSDYIIRLYDLIIPD-----DLLKFDELYIVLEIAD-SDLKKLFK----TPIFLTEEHIKTILYNLLLGENFIHESG-  149 (432)
T ss_dssp             HCCCTTBCCEEEECCCS-----CTTTCCCEEEEEECCS-EEHHHHHH----SSCCCCHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred             HcCCCCcceEEEEEecC-----CCCcCCeEEEEEecCC-cCHHHHHh----ccCCCCHHHHHHHHHHHHHHHHHHHHCC-
Confidence            99999999999987410     0111256899999765 69988886    5566999999999999999999999999 


Q ss_pred             CeeecCCCCCcEEEecCCCCCCceEEeeccceeecccc---------------------------CccCcccCCcccchh
Q 024842          181 PYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSK---------------------------FALGQRRYSCRNGLL  233 (262)
Q Consensus       181 ~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~---------------------------~~~~~~~~~~~~d~~  233 (262)
                       |+||||||+|||++.++    .+||+|||+|......                           ...+++.|.+||-+.
T Consensus       150 -ivHrDlkp~NILl~~~~----~~kL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~  224 (432)
T 3n9x_A          150 -IIHRDLKPANCLLNQDC----SVKVCDFGLARTINSEKDTNIVNDLEENEEPGPHNKNLKKQLTSHVVTRWYRAPELIL  224 (432)
T ss_dssp             -EECCCCCGGGEEECTTC----CEEECCCTTCEEC-------------------------------CCCCCTTCCHHHHT
T ss_pred             -CCCCCCCHHHeEECCCC----CEEEccCCCcccccccccccccccccccccccccccchhccccCCCCCccccCHHHHh
Confidence             99999999999998776    6999999999876432                           124566677776442


Q ss_pred             hhhhhhhhhhhcCcccchheeheecccC
Q 024842          234 SIVLHLSELLSCGTVRVIQILMRELMFG  261 (262)
Q Consensus       234 s~g~~~~e~~~~~~v~~~g~~~~~l~~G  261 (262)
                      .-.    ......|+||+|++++||++|
T Consensus       225 ~~~----~~~~~~DiwSlG~il~ell~g  248 (432)
T 3n9x_A          225 LQE----NYTKSIDIWSTGCIFAELLNM  248 (432)
T ss_dssp             TCS----CCCTHHHHHHHHHHHHHHHTT
T ss_pred             cCC----CCCcccccchHHHHHHHHHhc
Confidence            211    011235777777777777763

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*

Probab=100.00  E-value=4.5e-34  Score=235.24  Aligned_cols=191  Identities=23%  Similarity=0.342  Sum_probs=148.3

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc--hHHHHHHHHHHHHhhhC
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN--NEQLEMVREEIRVSSLF  102 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~--~~~~~~~~~E~~~l~~l  102 (262)
                      .++|++.+.||+|+||.||+|++.. +                      ..+|+|++....  ....+.+.+|+.+++.+
T Consensus        20 ~~~y~~~~~lG~G~~g~V~~~~~~~-~----------------------~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l   76 (311)
T 3niz_A           20 MEKYQKLEKVGEGTYGVVYKAKDSQ-G----------------------RIVALKRIRLDAEDEGIPSTAIREISLLKEL   76 (311)
T ss_dssp             SCEEEEEEEEEECSSCEEEEEEETT-S----------------------CEEEEEEEC------CHHHHHHHHHHHHHHC
T ss_pred             HhhhHhhhhccCCCCeEEEEEEECC-C----------------------CEEEEEEEecccccchhhHHHHHHHHHHHHc
Confidence            6799999999999999999999853 2                      367888765432  22346788999999999


Q ss_pred             CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCe
Q 024842          103 SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPY  182 (262)
Q Consensus       103 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~i  182 (262)
                      +||||+++++++          ......+++||++.+ +|.+.+.   .....+++..++.++.|++.||.|||+++  |
T Consensus        77 ~hp~iv~~~~~~----------~~~~~~~lv~e~~~~-~l~~~~~---~~~~~~~~~~~~~~~~qi~~~l~~LH~~~--i  140 (311)
T 3niz_A           77 HHPNIVSLIDVI----------HSERCLTLVFEFMEK-DLKKVLD---ENKTGLQDSQIKIYLYQLLRGVAHCHQHR--I  140 (311)
T ss_dssp             CCTTBCCEEEEE----------CCSSCEEEEEECCSE-EHHHHHH---TCTTCCCHHHHHHHHHHHHHHHHHHHHTT--E
T ss_pred             CCCCEeeeeeEE----------ccCCEEEEEEcCCCC-CHHHHHH---hccCCCCHHHHHHHHHHHHHHHHHHHHCC--c
Confidence            999999999987          446678999999874 7777664   24455999999999999999999999999  9


Q ss_pred             eecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-----ccCcccCCcccchhhhhhhhhhhhhcCcccchheehee
Q 024842          183 AHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRE  257 (262)
Q Consensus       183 vH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~  257 (262)
                      +||||||+|||++.++    .+||+|||++.....+.     ..++..|.+||-+....    ......|+||+|+++|+
T Consensus       141 vH~Dikp~NIl~~~~~----~~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~aPE~~~~~~----~~~~~~DiwslG~il~~  212 (311)
T 3niz_A          141 LHRDLKPQNLLINSDG----ALKLADFGLARAFGIPVRSYTHEVVTLWYRAPDVLMGSK----KYSTSVDIWSIGCIFAE  212 (311)
T ss_dssp             ECCCCCGGGEEECTTC----CEEECCCTTCEETTSCCC---CCCCCCTTCCHHHHTTCC----SCCTHHHHHHHHHHHHH
T ss_pred             ccCCCchHhEEECCCC----CEEEccCcCceecCCCcccccCCcccCCcCCHHHhcCCC----CCCchHHhHHHHHHHHH
Confidence            9999999999998776    69999999998765322     24566777777553211    11123578888888888


Q ss_pred             cccCC
Q 024842          258 LMFGR  262 (262)
Q Consensus       258 l~~G~  262 (262)
                      |++|+
T Consensus       213 ll~g~  217 (311)
T 3niz_A          213 MITGK  217 (311)
T ss_dssp             HHHSS
T ss_pred             HHhCC
Confidence            87774

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=100.00  E-value=3.2e-34  Score=242.15  Aligned_cols=194  Identities=20%  Similarity=0.252  Sum_probs=149.5

Q ss_pred             eeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc-chHHHHHHHHHHHHh
Q 024842           21 VWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ-NNEQLEMVREEIRVS   99 (262)
Q Consensus        21 ~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~-~~~~~~~~~~E~~~l   99 (262)
                      ..+..++|++.+.||+|+||.||+|++..+++                      .||+|.+... .....+.+.+|+.++
T Consensus       109 ~~~~~~~~~~~~~lG~G~~g~V~~~~~~~~~~----------------------~vavK~~~~~~~~~~~~~~~~E~~~l  166 (377)
T 3cbl_A          109 WVLNHEDLVLGEQIGRGNFGEVFSGRLRADNT----------------------LVAVKSCRETLPPDLKAKFLQEARIL  166 (377)
T ss_dssp             TBCCGGGEEEEEEEEEETTEEEEEEEETTTCC----------------------EEEEEECCTTSCHHHHTTTTHHHHHH
T ss_pred             cEEchHHeEEeeEeccCCCCeEEEEEEecCCe----------------------EEEEEEccccCCHHHHHHHHHHHHHH
Confidence            34567899999999999999999999876544                      5777766543 233446788999999


Q ss_pred             hhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCC
Q 024842          100 SLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLE  179 (262)
Q Consensus       100 ~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~  179 (262)
                      +.++||||+++++++          ......+++||++.+++|.+++..   ....+++..++.++.|++.||+|||+++
T Consensus       167 ~~l~hpniv~~~~~~----------~~~~~~~lv~e~~~~g~L~~~l~~---~~~~~~~~~~~~~~~qi~~~l~~LH~~~  233 (377)
T 3cbl_A          167 KQYSHPNIVRLIGVC----------TQKQPIYIVMELVQGGDFLTFLRT---EGARLRVKTLLQMVGDAAAGMEYLESKC  233 (377)
T ss_dssp             TTCCCTTBCCEEEEE----------CSSSSCEEEEECCTTCBHHHHHHH---HGGGCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HhCCCCCEEEEEEEE----------ecCCCcEEEEEcCCCCCHHHHHHh---cCCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            999999999999987          335678999999999999998863   2345899999999999999999999999


Q ss_pred             CCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccCc-------cCcccCCcccchhhhhhhhhhhhhcCcccchh
Q 024842          180 PPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKFA-------LGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQ  252 (262)
Q Consensus       180 ~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~~-------~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g  252 (262)
                        ++||||||+|||++.++    .+||+|||++........       ..+..|.+||.+..-.     .....||||+|
T Consensus       234 --ivHrDlkp~Nil~~~~~----~~kl~DfG~s~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-----~~~~~DvwslG  302 (377)
T 3cbl_A          234 --CIHRDLAARNCLVTEKN----VLKISDFGMSREEADGVYAASGGLRQVPVKWTAPEALNYGR-----YSSESDVWSFG  302 (377)
T ss_dssp             --EECSCCSGGGEEECTTC----CEEECCGGGCEECTTSEEECCSSCCEEEGGGSCHHHHHHCE-----EEHHHHHHHHH
T ss_pred             --cCCcccCHHHEEEcCCC----cEEECcCCCceecCCCceeecCCCCCCCcCcCCHhHhccCC-----CCchhhHHHHH
Confidence              99999999999998776    699999999986543221       1234577776432111     11234666666


Q ss_pred             eeheeccc
Q 024842          253 ILMRELMF  260 (262)
Q Consensus       253 ~~~~~l~~  260 (262)
                      +++|||++
T Consensus       303 ~il~el~t  310 (377)
T 3cbl_A          303 ILLWETFS  310 (377)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHh
Confidence            66666655

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}

Probab=100.00  E-value=8.9e-34  Score=235.51  Aligned_cols=220  Identities=27%  Similarity=0.376  Sum_probs=156.2

Q ss_pred             hhccCCCCCceeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHH
Q 024842           11 LYDSVNGGGDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLE   90 (262)
Q Consensus        11 ~~~~~~~~~~~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~   90 (262)
                      .......+..+.+...+|++.+.||+|+||.||+|++..+++                      .||+|++........+
T Consensus        13 ~~~~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~----------------------~vavK~~~~~~~~~~~   70 (337)
T 3ll6_A           13 RDQSDFVGQTVELGELRLRVRRVLAEGGFAFVYEAQDVGSGR----------------------EYALKRLLSNEEEKNR   70 (337)
T ss_dssp             --CCSSTTCEEEETTEEEEEEEEEECCSSEEEEEEEETTTCC----------------------EEEEEEEEESSHHHHH
T ss_pred             chHHHhhcceeeccCceEEEEEEEccCCceEEEEEEECCCCc----------------------EEEEEEecCCchHHHH
Confidence            334445566777888999999999999999999999876654                      6888887666666677


Q ss_pred             HHHHHHHHhhhCC-CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHH
Q 024842           91 MVREEIRVSSLFS-HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQIC  169 (262)
Q Consensus        91 ~~~~E~~~l~~l~-h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~  169 (262)
                      .+.+|+.+++.+. ||||+++++++....  ..........+++|+++. ++|.+++..... ...+++..++.++.|++
T Consensus        71 ~~~~e~~~l~~l~~h~~iv~~~~~~~~~~--~~~~~~~~~~~lv~e~~~-g~L~~~l~~~~~-~~~~~~~~~~~i~~qi~  146 (337)
T 3ll6_A           71 AIIQEVCFMKKLSGHPNIVQFCSAASIGK--EESDTGQAEFLLLTELCK-GQLVEFLKKMES-RGPLSCDTVLKIFYQTC  146 (337)
T ss_dssp             HHHHHHHHHHHHTTSTTBCCEEEEEEECT--TTSTTSSEEEEEEEECCS-EEHHHHHHHHHT-TCSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCCChhhccccccccc--cccccCCceEEEEEEecC-CCHHHHHHHhhc-cCCCCHHHHHHHHHHHH
Confidence            8899999999996 999999998763110  111234556889999875 799888865432 44699999999999999


Q ss_pred             HHHHHHHcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-----------------ccCcccCCcccch
Q 024842          170 AGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-----------------ALGQRRYSCRNGL  232 (262)
Q Consensus       170 ~~l~~lH~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-----------------~~~~~~~~~~~d~  232 (262)
                      .||.|||+.+++++||||||+|||++.++    .+||+|||++.......                 ..+++.|.+||.+
T Consensus       147 ~~l~~LH~~~~~ivH~Dikp~NIl~~~~~----~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~  222 (337)
T 3ll6_A          147 RAVQHMHRQKPPIIHRDLKVENLLLSNQG----TIKLCDFGSATTISHYPDYSWSAQRRALVEEEITRNTTPMYRTPEII  222 (337)
T ss_dssp             HHHHHHHTSSSCCBCCCCCGGGCEECTTS----CEEBCCCTTCBCCSSCC------------------------------
T ss_pred             HHHHHHHhCCCCEEEccCCcccEEECCCC----CEEEecCccceeccccCcccccccccccchhhccccCCCCcCChhhh
Confidence            99999999766799999999999998776    69999999998764321                 2355667777654


Q ss_pred             hhhhhhhhhhhhcCcccchheeheecccCC
Q 024842          233 LSIVLHLSELLSCGTVRVIQILMRELMFGR  262 (262)
Q Consensus       233 ~s~g~~~~e~~~~~~v~~~g~~~~~l~~G~  262 (262)
                      .....  .......|||++|+++|+|++|+
T Consensus       223 ~~~~~--~~~~~~~Dv~slG~il~el~~g~  250 (337)
T 3ll6_A          223 DLYSN--FPIGEKQDIWALGCILYLLCFRQ  250 (337)
T ss_dssp             -CCTT--SCSSHHHHHHHHHHHHHHHHHSS
T ss_pred             hcccc--CCCChHHhHHHHHHHHHHHHhCC
Confidence            21100  01112357788888888777764

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*

Probab=100.00  E-value=4e-34  Score=251.26  Aligned_cols=195  Identities=23%  Similarity=0.280  Sum_probs=156.4

Q ss_pred             ecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc---chHHHHHHHHHHHHh
Q 024842           23 INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ---NNEQLEMVREEIRVS   99 (262)
Q Consensus        23 ~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~---~~~~~~~~~~E~~~l   99 (262)
                      +..++|++.+.||+|+||.||+|++..+++                      .||+|++...   .......+.+|+.++
T Consensus       181 ~~~~~f~~~~~LG~G~fG~Vy~a~~~~tg~----------------------~vAvK~l~k~~~~~~~~~~~~~~E~~iL  238 (576)
T 2acx_A          181 VTKNTFRQYRVLGKGGFGEVCACQVRATGK----------------------MYACKKLEKKRIKKRKGEAMALNEKQIL  238 (576)
T ss_dssp             CCGGGEEEEEEEEEETTEEEEEEEETTTCC----------------------EEEEEEEEHHHHHHTTCHHHHHHHHHHH
T ss_pred             ccccceEEEEEEeeCCCEEEEEEEECCCCC----------------------EEEEEEEEhHhhhhhHHHHHHHHHHHHH
Confidence            457889999999999999999999987655                      5777765432   122235678899999


Q ss_pred             hhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCC
Q 024842          100 SLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLE  179 (262)
Q Consensus       100 ~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~  179 (262)
                      +.++||||+++++++          ......|++|||+.+++|.+++...  ....+++..++.++.||+.||.|||+++
T Consensus       239 ~~l~hp~Iv~l~~~~----------~~~~~l~lVmEy~~gg~L~~~l~~~--~~~~l~e~~~~~i~~qIl~aL~yLH~~g  306 (576)
T 2acx_A          239 EKVNSRFVVSLAYAY----------ETKDALCLVLTLMNGGDLKFHIYHM--GQAGFPEARAVFYAAEICCGLEDLHRER  306 (576)
T ss_dssp             HHCCCTTBCCEEEEE----------ECSSEEEEEECCCCSCBHHHHHHSS--SSCCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHcCCCCEeeEEEEE----------eeCCEEEEEEEcCCCCcHHHHHHhc--CCCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            999999999999887          3467899999999999999887622  1234999999999999999999999999


Q ss_pred             CCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC----ccCcccCCcccchhhhhhhhhhhhhcCcccchheeh
Q 024842          180 PPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILM  255 (262)
Q Consensus       180 ~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~  255 (262)
                        |+||||||+|||++.++    .+||+|||++.......    ..+++.|.+||.+..-++     ....|+||+|+++
T Consensus       307 --IvHrDLKPeNILld~~g----~vKL~DFGla~~~~~~~~~~~~~GT~~Y~APEvl~~~~~-----~~~~DiwSLGvil  375 (576)
T 2acx_A          307 --IVYRDLKPENILLDDHG----HIRISDLGLAVHVPEGQTIKGRVGTVGYMAPEVVKNERY-----TFSPDWWALGCLL  375 (576)
T ss_dssp             --EECCCCCGGGEEECTTS----CEEECCCTTCEECCTTCCEECCCSCGGGCCHHHHTTCEE-----SSHHHHHHHHHHH
T ss_pred             --EeccCCchheEEEeCCC----CeEEEecccceecccCccccccCCCccccCHHHHcCCCC-----CccchHHHHHHHH
Confidence              99999999999998777    69999999998765432    357788888876543221     1235788888888


Q ss_pred             eecccCC
Q 024842          256 RELMFGR  262 (262)
Q Consensus       256 ~~l~~G~  262 (262)
                      |||++|+
T Consensus       376 yeLltG~  382 (576)
T 2acx_A          376 YEMIAGQ  382 (576)
T ss_dssp             HHHHHSS
T ss_pred             HHHHhCC
Confidence            8888774

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}

Probab=100.00  E-value=6e-34  Score=236.11  Aligned_cols=198  Identities=18%  Similarity=0.232  Sum_probs=146.8

Q ss_pred             ceeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc-chHHHHHHHHHHHH
Q 024842           20 DVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ-NNEQLEMVREEIRV   98 (262)
Q Consensus        20 ~~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~-~~~~~~~~~~E~~~   98 (262)
                      ...+..++|++.+.||+|+||.||+|++..+++.++++                  +++|.+... .....+.+.+|+.+
T Consensus         9 ~~~l~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~k------------------v~iK~~~~~~~~~~~~~~~~E~~~   70 (327)
T 3lzb_A            9 LRILKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIP------------------VAIKELREATSPKANKEILDEAYV   70 (327)
T ss_dssp             CEECCTTTEEEEEEEEECSSEEEEEEEECCTTCSCCEE------------------EEEEEECCCSSCCCHHHHHHHHHH
T ss_pred             hcccCHhHceEEEEeeeCCCeEEEEEEEcCCCceEEEE------------------EEEEeeccccCHHHHHHHHHHHHH
Confidence            33456789999999999999999999998877755443                  566665433 23335678899999


Q ss_pred             hhhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcC
Q 024842           99 SSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSL  178 (262)
Q Consensus        99 l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~  178 (262)
                      ++.++||||+++++++.           ....+++++++.+++|.+++..   ....+++..++.++.|++.||.|||+.
T Consensus        71 l~~l~hp~iv~~~~~~~-----------~~~~~~v~~~~~~g~L~~~l~~---~~~~~~~~~~~~i~~qi~~aL~~LH~~  136 (327)
T 3lzb_A           71 MASVDNPHVCRLLGICL-----------TSTVQLITQLMPFGCLLDYVRE---HKDNIGSQYLLNWCVQIAKGMNYLEDR  136 (327)
T ss_dssp             HTTCCBTTBCCCCEEEE-----------SSSEEEEECCCSSCBHHHHHHH---TTTCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHhCCCCCeeEEEEEEe-----------cCCceEEEEecCCCcHHHHHHh---cCCCCCHHHHHHHHHHHHHHHHHHhhC
Confidence            99999999999999874           2347899999999999998863   345699999999999999999999999


Q ss_pred             CCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-------ccCcccCCcccchhhhhhhhhhhhhcCcccch
Q 024842          179 EPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-------ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVI  251 (262)
Q Consensus       179 ~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-------~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~  251 (262)
                      +  |+||||||+|||++.++    .+||+|||++.......       ..++..|.+||.+....+     ....|+||+
T Consensus       137 ~--ivH~Dikp~NIl~~~~~----~~kL~DfG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~-----~~~~Di~sl  205 (327)
T 3lzb_A          137 R--LVHRDLAARNVLVKTPQ----HVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIY-----THQSDVWSY  205 (327)
T ss_dssp             T--CCCSCCCGGGEEEEETT----EEEECCTTC----------------CCCGGGSCHHHHHHCCC-----CHHHHHHHH
T ss_pred             C--CcCCCCCHHHEEEcCCC----CEEEccCcceeEccCccccccccCCCccccccCHHHHcCCCC-----ChHHHHHHH
Confidence            9  99999999999998877    69999999998764322       123445777764422111     112456666


Q ss_pred             heeheeccc
Q 024842          252 QILMRELMF  260 (262)
Q Consensus       252 g~~~~~l~~  260 (262)
                      |+++|+|++
T Consensus       206 G~il~ell~  214 (327)
T 3lzb_A          206 GVTVWELMT  214 (327)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHH
Confidence            666666655

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}

Probab=100.00  E-value=5.8e-34  Score=235.66  Aligned_cols=212  Identities=17%  Similarity=0.200  Sum_probs=139.4

Q ss_pred             CCCCCceeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc--chHHHHHH
Q 024842           15 VNGGGDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ--NNEQLEMV   92 (262)
Q Consensus        15 ~~~~~~~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~--~~~~~~~~   92 (262)
                      .....+..+..++|++.+.||+|+||.||+|++..+++.                   ...+|+|.+...  .....+.+
T Consensus        12 ~~~~~~~~i~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~-------------------~~~vavK~~~~~~~~~~~~~~~   72 (323)
T 3qup_A           12 KEKLEDVLIPEQQFTLGRMLGKGEFGSVREAQLKQEDGS-------------------FVKVAVKMLKADIIASSDIEEF   72 (323)
T ss_dssp             ----CTTBCC---CEEEEEEEEETTEEEEEEEC--------------------------CEEEEEEC------CHHHHHH
T ss_pred             HHHhhhcccChhHeEEeceecccCCeEEEEEEEcccCCc-------------------ceeEEEEEecccccCHHHHHHH
Confidence            334456667789999999999999999999998765431                   125788877654  34456788


Q ss_pred             HHHHHHhhhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhh--cCCCCCHHHHHHHHHHHHH
Q 024842           93 REEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQT--KKEFFSTSDVLQIFYQICA  170 (262)
Q Consensus        93 ~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~--~~~~~~~~~~~~i~~ql~~  170 (262)
                      .+|+.+++.++||||+++++++....    ........+++|||+.+++|.+++.....  ....+++..++.++.|++.
T Consensus        73 ~~E~~~l~~l~h~~iv~~~~~~~~~~----~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~  148 (323)
T 3qup_A           73 LREAACMKEFDHPHVAKLVGVSLRSR----AKGRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIAC  148 (323)
T ss_dssp             HHHHHHHTTCCCTTBCCCCEEEECC-----------CEEEEEECCTTCBHHHHHHHHHC---CCCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCceehhhceeeccc----cccCCCccEEEEEeccCCcHHHHHHhhhccccccccCHHHHHHHHHHHHH
Confidence            99999999999999999999874200    00111234899999999999998865432  2235899999999999999


Q ss_pred             HHHHHHcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-------ccCcccCCcccchhhhhhhhhhhh
Q 024842          171 GLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-------ALGQRRYSCRNGLLSIVLHLSELL  243 (262)
Q Consensus       171 ~l~~lH~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-------~~~~~~~~~~~d~~s~g~~~~e~~  243 (262)
                      ||.|||+++  ++||||||+||+++.++    .+||+|||++.......       ..++..|.+||.+....     ..
T Consensus       149 al~~LH~~~--ivH~Dikp~NIli~~~~----~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-----~~  217 (323)
T 3qup_A          149 GMEYLSSRN--FIHRDLAARNCMLAEDM----TVCVADFGLSRKIYSGDYYRQGCASKLPVKWLALESLADNL-----YT  217 (323)
T ss_dssp             HHHHHHHTT--CCCSCCSGGGEEECTTS----CEEECCCCC-----------------CCGGGCCHHHHHHCC-----CC
T ss_pred             HHHHHHcCC--cccCCCCcceEEEcCCC----CEEEeeccccccccccccccccccccCcccccCchhhcCCC-----CC
Confidence            999999999  99999999999998776    69999999998654322       12334566665432211     11


Q ss_pred             hcCcccchheeheeccc
Q 024842          244 SCGTVRVIQILMRELMF  260 (262)
Q Consensus       244 ~~~~v~~~g~~~~~l~~  260 (262)
                      ...|+||+|+++|+|++
T Consensus       218 ~~~Di~slG~il~ell~  234 (323)
T 3qup_A          218 VHSDVWAFGVTMWEIMT  234 (323)
T ss_dssp             HHHHHHHHHHHHHHHHT
T ss_pred             CccchhhHHHHHHHHHh
Confidence            12456666666666655

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A

Probab=100.00  E-value=5.3e-34  Score=235.81  Aligned_cols=195  Identities=25%  Similarity=0.327  Sum_probs=153.8

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccch------HHHHHHHHHHHH
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNN------EQLEMVREEIRV   98 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~------~~~~~~~~E~~~   98 (262)
                      .++|++.+.||+|+||.||+|++..+++                      .+|+|.+.....      ...+.+.+|+.+
T Consensus        11 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~----------------------~vavK~~~~~~~~~~~~~~~~~~~~~E~~~   68 (321)
T 2a2a_A           11 EDFYDIGEELGSGQFAIVKKCREKSTGL----------------------EYAAKFIKKRQSRASRRGVSREEIEREVSI   68 (321)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTCC----------------------EEEEEEEEBCSSSSCSSSBCHHHHHHHHHH
T ss_pred             hccEEEeeEeeecCCEEEEEEEECCCCe----------------------EEEEEEEecccccccccchhHHHHHHHHHH
Confidence            4689999999999999999999987665                      466665543321      124678899999


Q ss_pred             hhhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcC
Q 024842           99 SSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSL  178 (262)
Q Consensus        99 l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~  178 (262)
                      ++.++||||+++++++          ......+++||++.+++|.+++.    ....+++..++.++.|++.||.|||+.
T Consensus        69 l~~l~h~~iv~~~~~~----------~~~~~~~lv~e~~~~~~L~~~l~----~~~~~~~~~~~~i~~qi~~aL~~lH~~  134 (321)
T 2a2a_A           69 LRQVLHHNVITLHDVY----------ENRTDVVLILELVSGGELFDFLA----QKESLSEEEATSFIKQILDGVNYLHTK  134 (321)
T ss_dssp             HHHCCCTTBCCEEEEE----------ECSSEEEEEECCCCSCBHHHHHH----TCSCEEHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHhCCCCCcceEEEEE----------ecCCEEEEEEEcCCCCcHHHHHH----hcCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            9999999999999987          33567999999999999999886    455699999999999999999999999


Q ss_pred             CCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC----ccCcccCCcccchhhhhhhhhhhhhcCcccchhee
Q 024842          179 EPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQIL  254 (262)
Q Consensus       179 ~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~  254 (262)
                      +  ++||||||+||+++.++.....++|+|||++.......    ..+++.|.+||.+..-.     .....|+|++|++
T Consensus       135 ~--ivH~dikp~NIl~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-----~~~~~Di~slG~i  207 (321)
T 2a2a_A          135 K--IAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIEDGVEFKNIFGTPEFVAPEIVNYEP-----LGLEADMWSIGVI  207 (321)
T ss_dssp             T--EECCCCSGGGEEESCTTSSSCCEEECCCTTCEECCTTCCCCCCCSCGGGCCHHHHTTCC-----CCTHHHHHHHHHH
T ss_pred             C--eecCCCChHHEEEecCCCCcCCEEEccCccceecCccccccccCCCCCccCcccccCCC-----CCCccccHHHHHH
Confidence            8  99999999999998766444469999999998765432    34667777777542211     1123577777777


Q ss_pred             heecccCC
Q 024842          255 MRELMFGR  262 (262)
Q Consensus       255 ~~~l~~G~  262 (262)
                      +|+|++|+
T Consensus       208 l~~l~~g~  215 (321)
T 2a2a_A          208 TYILLSGA  215 (321)
T ss_dssp             HHHHHHSC
T ss_pred             HHHHHHCC
Confidence            77777764

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*

Probab=100.00  E-value=2e-34  Score=239.24  Aligned_cols=196  Identities=19%  Similarity=0.221  Sum_probs=152.0

Q ss_pred             eecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhh
Q 024842           22 WINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSL  101 (262)
Q Consensus        22 ~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~  101 (262)
                      .+.+++|++.+.||+|+||.||+|++..+++                      .||+|.+.....  .+.+.+|+.+++.
T Consensus         5 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~----------------------~vavK~~~~~~~--~~~~~~E~~~l~~   60 (330)
T 2izr_A            5 LMVGPNFRVGKKIGCGNFGELRLGKNLYTNE----------------------YVAIKLEPMKSR--APQLHLEYRFYKQ   60 (330)
T ss_dssp             CEETTTEEEEEECCC-CTTSEEEEEETTTTE----------------------EEEEEEEETTCS--SCCHHHHHHHHHH
T ss_pred             EEEcCCeEEEEEeeccCCceEEEEEECCCCc----------------------EEEEEEeccccc--hHHHHHHHHHHHH
Confidence            3457899999999999999999999877655                      567776543322  2457789999999


Q ss_pred             C-CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCC
Q 024842          102 F-SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEP  180 (262)
Q Consensus       102 l-~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~  180 (262)
                      + +||||+++++++          ......+++||++ +++|.+++...   ...+++..++.++.|++.||.|||+.+ 
T Consensus        61 l~~h~~i~~~~~~~----------~~~~~~~lv~e~~-~~~L~~~~~~~---~~~~~~~~~~~i~~qi~~~l~~LH~~~-  125 (330)
T 2izr_A           61 LGSGDGIPQVYYFG----------PCGKYNAMVLELL-GPSLEDLFDLC---DRTFSLKTVLMIAIQLISRMEYVHSKN-  125 (330)
T ss_dssp             HCSCTTSCCEEEEE----------EETTEEEEEEECC-CCBHHHHHHHT---TTCCCHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred             hhCCCCCCEEEEEE----------ecCCccEEEEEeC-CCCHHHHHHHc---CCCCCHHHHHHHHHHHHHHHHHHHhCC-
Confidence            9 899999999887          3356789999999 99999988642   456999999999999999999999998 


Q ss_pred             CeeecCCCCCcEEEecCCC-CCCceEEeeccceeecccc------------CccCcccCCcccchhhhhhhhhhhhhcCc
Q 024842          181 PYAHNDVKPGNILITCRKG-QPPLAILMDFGSARPAQSK------------FALGQRRYSCRNGLLSIVLHLSELLSCGT  247 (262)
Q Consensus       181 ~ivH~dikp~Nill~~~~~-~~~~~kl~Dfg~a~~~~~~------------~~~~~~~~~~~~d~~s~g~~~~e~~~~~~  247 (262)
                       |+||||||+|||++.++. ....+||+|||++......            ...++..|.+||.+....+     ....|
T Consensus       126 -iiHrDlkp~Nill~~~~~~~~~~~kl~DFg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-----~~~~D  199 (330)
T 2izr_A          126 -LIYRDVKPENFLIGRPGNKTQQVIHIIDFALAKEYIDPETKKHIPYREHKSLTGTARYMSINTHLGKEQ-----SRRDD  199 (330)
T ss_dssp             -EECCCCCGGGEEECCGGGTCTTSEEECCCTTCEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCC-----CHHHH
T ss_pred             -eeccCCCHHHeeeccCCCCCCceEEEEEcccceeeecCCCCccccccccCCcCCCccccChHHHcCCCC-----CchhH
Confidence             999999999999987652 2224999999999876432            2356778888775433221     12357


Q ss_pred             ccchheeheecccCC
Q 024842          248 VRVIQILMRELMFGR  262 (262)
Q Consensus       248 v~~~g~~~~~l~~G~  262 (262)
                      +||+|+++|+|++|+
T Consensus       200 i~slG~il~ell~g~  214 (330)
T 2izr_A          200 LEALGHMFMYFLRGS  214 (330)
T ss_dssp             HHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHhcCC
Confidence            777777777777764

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*

Probab=100.00  E-value=3.1e-34  Score=233.39  Aligned_cols=201  Identities=18%  Similarity=0.297  Sum_probs=154.1

Q ss_pred             eecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccch---HH----HHHHHH
Q 024842           22 WINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNN---EQ----LEMVRE   94 (262)
Q Consensus        22 ~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~---~~----~~~~~~   94 (262)
                      .+..++|++.+.||+|+||.||+|++..+++                      .||+|++.....   ..    .+.+.+
T Consensus        15 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~----------------------~vaiK~~~~~~~~~~~~~~~~~~~~~~   72 (287)
T 4f0f_A           15 TLADNEIEYEKQIGKGGFGLVHKGRLVKDKS----------------------VVAIKSLILGDSEGETEMIEKFQEFQR   72 (287)
T ss_dssp             BCCSTTEEEEEECCCCSSSCEEEEEETTTCC----------------------EEEEEECCCCTTTCCHHHHCCSHHHHH
T ss_pred             hhhhccceehhccccCCceeEEEEEEcCCce----------------------EEEEEEeeccccccchhHHHHHHHHHH
Confidence            4557899999999999999999999987655                      566776543211   11    167889


Q ss_pred             HHHHhhhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHH
Q 024842           95 EIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKH  174 (262)
Q Consensus        95 E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~  174 (262)
                      |+.+++.++||||+++++++.            ...+++||++.+++|.+.+..   ....+++..++.++.|++.||.|
T Consensus        73 E~~~l~~l~h~~i~~~~~~~~------------~~~~lv~e~~~~~~L~~~l~~---~~~~~~~~~~~~~~~~l~~~l~~  137 (287)
T 4f0f_A           73 EVFIMSNLNHPNIVKLYGLMH------------NPPRMVMEFVPCGDLYHRLLD---KAHPIKWSVKLRLMLDIALGIEY  137 (287)
T ss_dssp             HHHHHTTCCCTTBCCEEEEET------------TTTEEEEECCTTCBHHHHHHC---TTSCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCCchhhheeec------------CCCeEEEEecCCCCHHHHHhc---ccCCccHHHHHHHHHHHHHHHHH
Confidence            999999999999999999872            233799999999999887752   34569999999999999999999


Q ss_pred             HHcCCCCeeecCCCCCcEEEecCC-CCCCceEEeeccceeeccccC--ccCcccCCcccchhhhhhhhhhhhhcCcccch
Q 024842          175 MHSLEPPYAHNDVKPGNILITCRK-GQPPLAILMDFGSARPAQSKF--ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVI  251 (262)
Q Consensus       175 lH~~~~~ivH~dikp~Nill~~~~-~~~~~~kl~Dfg~a~~~~~~~--~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~  251 (262)
                      ||+.+++++||||||+||+++.++ +....+||+|||++.......  ..++..|.+||.+...+..   .....|+|++
T Consensus       138 lH~~~~~ivH~dikp~Nil~~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~---~~~~~Di~sl  214 (287)
T 4f0f_A          138 MQNQNPPIVHRDLRSPNIFLQSLDENAPVCAKVADFGLSQQSVHSVSGLLGNFQWMAPETIGAEEES---YTEKADTYSF  214 (287)
T ss_dssp             HHTSSSCCBCSCCSGGGEEESCCCTTCSCCEEECCCTTCBCCSSCEECCCCCCTTSCGGGSSCSSCE---ECHHHHHHHH
T ss_pred             HHhCCCCeecCCCCcceEEEeccCCCCceeEEeCCCCccccccccccccCCCccccCchhhccCCCC---cCchhhHHHH
Confidence            999776799999999999998665 233349999999998654332  3567778888765222111   1123578888


Q ss_pred             heeheecccCC
Q 024842          252 QILMRELMFGR  262 (262)
Q Consensus       252 g~~~~~l~~G~  262 (262)
                      |+++|+|++|+
T Consensus       215 G~~l~~l~~g~  225 (287)
T 4f0f_A          215 AMILYTILTGE  225 (287)
T ss_dssp             HHHHHHHHHSS
T ss_pred             HHHHHHHHcCC
Confidence            88888888774

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A

Probab=100.00  E-value=2.2e-34  Score=237.39  Aligned_cols=199  Identities=23%  Similarity=0.307  Sum_probs=155.1

Q ss_pred             CCceEEE-EEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhC-
Q 024842           25 ENRYRIL-RQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLF-  102 (262)
Q Consensus        25 ~~~y~~~-~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l-  102 (262)
                      .+.|++. +.||+|+||.||+|++..+++                      .||+|++........+.+.+|+.+++.+ 
T Consensus        11 ~~~y~i~~~~lg~G~~g~V~~~~~~~~~~----------------------~vavK~~~~~~~~~~~~~~~E~~~l~~~~   68 (316)
T 2ac3_A           11 EDVYQLQEDVLGEGAHARVQTCINLITSQ----------------------EYAVKIIEKQPGHIRSRVFREVEMLYQCQ   68 (316)
T ss_dssp             TTSCEECCCCCCCCSSEEEEEEECSSSCC----------------------EEEEEEEECCSSCCHHHHHHHHHHHHHTC
T ss_pred             ceeEEecCceecCCceEEEEEEEEcCCCc----------------------EEEEEEEeeCcchhHHHHHHHHHHHHHhc
Confidence            5789985 789999999999999876654                      6788877655444457788999999884 


Q ss_pred             CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCe
Q 024842          103 SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPY  182 (262)
Q Consensus       103 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~i  182 (262)
                      +||||+++++++.          .....+++||++.+++|.+++.    ....+++..++.++.|++.||.|||+++  |
T Consensus        69 ~h~~i~~~~~~~~----------~~~~~~lv~e~~~~~~L~~~l~----~~~~~~~~~~~~i~~qi~~~l~~lH~~~--i  132 (316)
T 2ac3_A           69 GHRNVLELIEFFE----------EEDRFYLVFEKMRGGSILSHIH----KRRHFNELEASVVVQDVASALDFLHNKG--I  132 (316)
T ss_dssp             CCTTBCCEEEEEE----------ETTEEEEEEECCTTCBHHHHHH----HHSSCCHHHHHHHHHHHHHHHHHHHHTT--C
T ss_pred             CCCCeeeEEEEEe----------eCCEEEEEEEcCCCCcHHHHHh----ccCCCCHHHHHHHHHHHHHHHHHHHhCC--c
Confidence            7999999999873          3568999999999999999886    3355999999999999999999999998  9


Q ss_pred             eecCCCCCcEEEecCCCCCCceEEeeccceeecccc------------CccCcccCCcccchhhhhhhhhhhhhcCcccc
Q 024842          183 AHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSK------------FALGQRRYSCRNGLLSIVLHLSELLSCGTVRV  250 (262)
Q Consensus       183 vH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~------------~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~  250 (262)
                      +||||||+||+++.++. ...+||+|||++......            ...++..|.+||.+..............|+|+
T Consensus       133 vH~dlkp~Nil~~~~~~-~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~Diws  211 (316)
T 2ac3_A          133 AHRDLKPENILCEHPNQ-VSPVKICDFDLGSGIKLNGDCSPISTPELLTPCGSAEYMAPEVVEAFSEEASIYDKRCDLWS  211 (316)
T ss_dssp             CCCCCCGGGEEESCSSS-SCSEEECCTTCCC-------------------CCSGGGCCHHHHHHTSHHHHHHTTTHHHHH
T ss_pred             eeCCCCHHHEEEccCCC-cCceEEEEccCccccccCCccccccccccccccCCcCccChHHhhcccccccCCCcccccHh
Confidence            99999999999987652 224999999998765321            12377788888876543222222334578999


Q ss_pred             hheeheecccCC
Q 024842          251 IQILMRELMFGR  262 (262)
Q Consensus       251 ~g~~~~~l~~G~  262 (262)
                      +|+++|+|++|+
T Consensus       212 lG~il~~l~~g~  223 (316)
T 2ac3_A          212 LGVILYILLSGY  223 (316)
T ss_dssp             HHHHHHHHHHSS
T ss_pred             HHHHHHHHHHCC
Confidence            999999998885

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*

Probab=100.00  E-value=1.6e-33  Score=233.55  Aligned_cols=202  Identities=19%  Similarity=0.243  Sum_probs=159.7

Q ss_pred             eeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhh
Q 024842           21 VWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSS  100 (262)
Q Consensus        21 ~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~  100 (262)
                      -.++.++|++.+.||+|+||.||+|+......                  ..+..|++|++........+.+.+|+.+++
T Consensus        18 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~------------------~~~~~vavK~~~~~~~~~~~~~~~E~~~l~   79 (327)
T 3lxl_A           18 TIFEERHLKYISQLGKGNFGSVELCRYDPLGD------------------NTGALVAVKQLQHSGPDQQRDFQREIQILK   79 (327)
T ss_dssp             CBCCGGGEEEEEEEEEETTEEEEEEEECTTSS------------------SCSEEEEEEEESSCCHHHHHHHHHHHHHHH
T ss_pred             hhhchhhhhhhhhccCCCCeEEEEEEeccCCC------------------CcceEEEEEEeccCCHHHHHHHHHHHHHHH
Confidence            34667899999999999999999998533221                  134578999888777777788999999999


Q ss_pred             hCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCC
Q 024842          101 LFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEP  180 (262)
Q Consensus       101 ~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~  180 (262)
                      .++||||+++++++.        .......+++||++.+++|.+++...   ...+++..++.++.|++.||.|||+.+ 
T Consensus        80 ~l~h~~i~~~~~~~~--------~~~~~~~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~~i~~qi~~al~~lH~~~-  147 (327)
T 3lxl_A           80 ALHSDFIVKYRGVSY--------GPGRQSLRLVMEYLPSGCLRDFLQRH---RARLDASRLLLYSSQICKGMEYLGSRR-  147 (327)
T ss_dssp             TCCCTTBCCEEEEEE--------CSSSCEEEEEEECCTTCBHHHHHHHH---GGGCCHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred             hcCCCceeEEEEEEe--------cCCCceEEEEEeecCCCCHHHHHHhc---ccCCCHHHHHHHHHHHHHHHHHHHhCC-
Confidence            999999999998763        23456789999999999999988642   335999999999999999999999998 


Q ss_pred             CeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC--------ccCcccCCcccchhhhhhhhhhhhhcCcccchh
Q 024842          181 PYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF--------ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQ  252 (262)
Q Consensus       181 ~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~--------~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g  252 (262)
                       ++|+||||+||+++.++    .+||+|||++.......        ..++..|.+||.+....     .....|+|++|
T Consensus       148 -ivH~Dikp~NIl~~~~~----~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-----~~~~~Di~slG  217 (327)
T 3lxl_A          148 -CVHRDLAARNILVESEA----HVKIADFGLAKLLPLDKDYYVVREPGQSPIFWYAPESLSDNI-----FSRQSDVWSFG  217 (327)
T ss_dssp             -EECSCCSGGGEEEEETT----EEEECCGGGCEECCTTCSEEECSSCCCSCGGGSCHHHHHHCE-----EEHHHHHHHHH
T ss_pred             -ccCCCCChhhEEECCCC----CEEEcccccceecccCCccceeeccCCccccccCHHHhccCC-----CChHHhHHHHH
Confidence             99999999999998877    79999999998765332        23445577777542221     11235778888


Q ss_pred             eeheecccCC
Q 024842          253 ILMRELMFGR  262 (262)
Q Consensus       253 ~~~~~l~~G~  262 (262)
                      +++++|++|+
T Consensus       218 ~il~~ll~g~  227 (327)
T 3lxl_A          218 VVLYELFTYC  227 (327)
T ss_dssp             HHHHHHHTTT
T ss_pred             HHHHHHHhCC
Confidence            8888777763

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A

Probab=100.00  E-value=3.6e-34  Score=244.97  Aligned_cols=196  Identities=18%  Similarity=0.275  Sum_probs=148.9

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc--------chHHHHHHHHHH
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ--------NNEQLEMVREEI   96 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~--------~~~~~~~~~~E~   96 (262)
                      .++|.+.+.||+|+||.||+|.+..+++                      .||+|.+...        .......+.+|+
T Consensus       134 ~~~y~~~~~LG~G~~g~V~~a~~~~~~~----------------------~vavK~~~~~~~~~~~~~~~~~~~~~~~E~  191 (419)
T 3i6u_A          134 RDEYIMSKTLGSGACGEVKLAFERKTCK----------------------KVAIRIISKRKFAIGSAREADPALNVETEI  191 (419)
T ss_dssp             HTTEEEEEEEEECSSSEEEEEEETTTCC----------------------EEEEEEEEGGGGTTC--------CCHHHHH
T ss_pred             hccEEEEeEEeeCCCeEEEEEEECCCCc----------------------EEEEEEEEechhcccccccchhHHHHHHHH
Confidence            4689999999999999999999988766                      4555554322        112223578899


Q ss_pred             HHhhhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHH
Q 024842           97 RVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMH  176 (262)
Q Consensus        97 ~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH  176 (262)
                      .+++.++||||+++++++.           ....+++|||+.+++|.+++.    ....+++..++.++.|++.||.|||
T Consensus       192 ~~l~~l~hpniv~l~~~~~-----------~~~~~lv~e~~~~g~L~~~l~----~~~~~~~~~~~~i~~qi~~~l~~LH  256 (419)
T 3i6u_A          192 EILKKLNHPCIIKIKNFFD-----------AEDYYIVLELMEGGELFDKVV----GNKRLKEATCKLYFYQMLLAVQYLH  256 (419)
T ss_dssp             HHHHHCCCTTBCCCCEEEE-----------SSEEEEEEECCTTCBGGGGTS----SSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCCCEeeEEEEEe-----------cCceEEEEEcCCCCcHHHHHh----ccCCCCHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998862           345799999999999998775    5567999999999999999999999


Q ss_pred             cCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC----ccCcccCCcccchhhhhhhhhhhhhcCcccchh
Q 024842          177 SLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQ  252 (262)
Q Consensus       177 ~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g  252 (262)
                      +++  |+||||||+|||++.++. ...+||+|||++.......    ..+++.|.+||.+.+.+...  .....|+||+|
T Consensus       257 ~~~--ivHrDlkp~NIll~~~~~-~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~--~~~~~DiwslG  331 (419)
T 3i6u_A          257 ENG--IIHRDLKPENVLLSSQEE-DCLIKITDFGHSKILGETSLMRTLCGTPTYLAPEVLVSVGTAG--YNRAVDCWSLG  331 (419)
T ss_dssp             HTT--CCCSCCCGGGEEESSSSS-SCCEEECCSSTTTSCC-----------CTTCCTTTTC----CT--THHHHHHHHHH
T ss_pred             HCC--ccccCCChHhEEEecCCC-cceEEEeecccceecCCCccccccCCCCCccCceeeecCCCCC--CCchhhhHhHH
Confidence            998  999999999999976542 2259999999998765432    35788899998775432221  11246899999


Q ss_pred             eeheecccCC
Q 024842          253 ILMRELMFGR  262 (262)
Q Consensus       253 ~~~~~l~~G~  262 (262)
                      +++|+|++|+
T Consensus       332 ~il~~lltg~  341 (419)
T 3i6u_A          332 VILFICLSGY  341 (419)
T ss_dssp             HHHHHHHHSS
T ss_pred             HHHHHHHHCC
Confidence            9999998885

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*

Probab=100.00  E-value=1.1e-33  Score=232.83  Aligned_cols=203  Identities=17%  Similarity=0.229  Sum_probs=156.0

Q ss_pred             ceeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc-chHHHHHHHHHHHH
Q 024842           20 DVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ-NNEQLEMVREEIRV   98 (262)
Q Consensus        20 ~~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~-~~~~~~~~~~E~~~   98 (262)
                      ...+..++|++.+.||+|+||.||+|.+......                 ..+..+++|.+... .....+.+.+|+.+
T Consensus        17 ~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~-----------------~~~~~vavK~~~~~~~~~~~~~~~~E~~~   79 (314)
T 2ivs_A           17 KWEFPRKNLVLGKTLGEGEFGKVVKATAFHLKGR-----------------AGYTTVAVKMLKENASPSELRDLLSEFNV   79 (314)
T ss_dssp             TTBCCGGGEEEEEEEEECSSSEEEEEEEETGGGC-----------------SSEEEEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred             ccccchhheeeeeeecccCCeeEEEEEEeccCcc-----------------cCcceEEEEeccCCCCHHHHHHHHHHHHH
Confidence            3445678999999999999999999998543321                 12347888887654 34456788999999


Q ss_pred             hhhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhh--------------------cCCCCCH
Q 024842           99 SSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQT--------------------KKEFFST  158 (262)
Q Consensus        99 l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~--------------------~~~~~~~  158 (262)
                      ++.++||||+++++++          ......+++||++.+++|.+++.....                    ....+++
T Consensus        80 l~~l~hp~iv~~~~~~----------~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (314)
T 2ivs_A           80 LKQVNHPHVIKLYGAC----------SQDGPLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTM  149 (314)
T ss_dssp             HTTCCCTTBCCEEEEE----------CSSSSCEEEEECCTTCBHHHHHHHTTTSTTEEC----------------CEECH
T ss_pred             HhhCCCCceeeEEEEE----------ecCCceEEEEeecCCCCHHHHHHHHhhccCCcccccccccccccccccccCcCH
Confidence            9999999999999987          346679999999999999999875332                    1234899


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-------ccCcccCCcccc
Q 024842          159 SDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-------ALGQRRYSCRNG  231 (262)
Q Consensus       159 ~~~~~i~~ql~~~l~~lH~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-------~~~~~~~~~~~d  231 (262)
                      ..++.++.|++.||.|||+++  ++||||||+||+++.++    .+||+|||++.......       ..++..|.+||.
T Consensus       150 ~~~~~i~~qi~~~l~~lH~~~--ivH~dikp~NIli~~~~----~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~  223 (314)
T 2ivs_A          150 GDLISFAWQISQGMQYLAEMK--LVHRDLAARNILVAEGR----KMKISDFGLSRDVYEEDSYVKRSQGRIPVKWMAIES  223 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEEETTT----EEEECCCTTCEECTTTSCEECSSCCCSCGGGCCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHCC--CcccccchheEEEcCCC----CEEEccccccccccccccceeccCCCCcccccChhh
Confidence            999999999999999999999  99999999999998776    69999999998764322       234455777765


Q ss_pred             hhhhhhhhhhhhhcCcccchheeheeccc
Q 024842          232 LLSIVLHLSELLSCGTVRVIQILMRELMF  260 (262)
Q Consensus       232 ~~s~g~~~~e~~~~~~v~~~g~~~~~l~~  260 (262)
                      +....     .....|+|++|+++|+|++
T Consensus       224 ~~~~~-----~~~~~Di~slG~il~el~t  247 (314)
T 2ivs_A          224 LFDHI-----YTTQSDVWSFGVLLWEIVT  247 (314)
T ss_dssp             HHHCE-----ECHHHHHHHHHHHHHHHHT
T ss_pred             hcCCC-----cCchhhHHHHHHHHHHHHh
Confidence            43221     1123567777777777766

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=4.7e-34  Score=240.29  Aligned_cols=203  Identities=24%  Similarity=0.340  Sum_probs=150.0

Q ss_pred             CCceeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc--chHHHHHHHHH
Q 024842           18 GGDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ--NNEQLEMVREE   95 (262)
Q Consensus        18 ~~~~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~--~~~~~~~~~~E   95 (262)
                      .+..+-..++|++.+.||+|+||.||+|.+..+++                      .||+|++...  .....+.+.+|
T Consensus        17 ~~~~~~~~~~y~~~~~lG~G~~g~V~~a~~~~~~~----------------------~vaiK~~~~~~~~~~~~~~~~~E   74 (367)
T 1cm8_A           17 TKTAWEVRAVYRDLQPVGSGAYGAVCSAVDGRTGA----------------------KVAIKKLYRPFQSELFAKRAYRE   74 (367)
T ss_dssp             SSSEECCBSSEEEEEEC------CEEEEEETTTCC----------------------EEEEEECSSTTSSHHHHHHHHHH
T ss_pred             cCceeeecceEEEeEEeeecCCeEEEEEEECCCCC----------------------EEEEEEeCccccCHHHHHHHHHH
Confidence            33455557899999999999999999999887655                      5777776432  34456778899


Q ss_pred             HHHhhhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHH
Q 024842           96 IRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHM  175 (262)
Q Consensus        96 ~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~l  175 (262)
                      +.+++.++||||+++++++...    .........|++||++ +++|.+++..     ..+++..++.++.|++.||.||
T Consensus        75 ~~~l~~l~hpnIv~l~~~~~~~----~~~~~~~~~~lv~e~~-~~~L~~~~~~-----~~l~~~~~~~~~~qi~~~L~~L  144 (367)
T 1cm8_A           75 LRLLKHMRHENVIGLLDVFTPD----ETLDDFTDFYLVMPFM-GTDLGKLMKH-----EKLGEDRIQFLVYQMLKGLRYI  144 (367)
T ss_dssp             HHHHHHCCBTTBCCCSEEECSC----SSTTTCCCCEEEEECC-SEEHHHHHHH-----CCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCcCCCCceeeEecC----CccccCceEEEEEecC-CCCHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999987310    0001124579999998 8899988752     4589999999999999999999


Q ss_pred             HcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC--ccCcccCCcccchhhhhhhhhhhhhcCcccchhe
Q 024842          176 HSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF--ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQI  253 (262)
Q Consensus       176 H~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~--~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~  253 (262)
                      |+++  |+||||||+||+++.++    .+||+|||++.......  ..++..|.+||.+....    ......|+||+|+
T Consensus       145 H~~~--ivH~Dlkp~NIll~~~~----~~kl~Dfg~a~~~~~~~~~~~~t~~y~aPE~~~~~~----~~~~~~DiwslG~  214 (367)
T 1cm8_A          145 HAAG--IIHRDLKPGNLAVNEDC----ELKILDFGLARQADSEMTGYVVTRWYRAPEVILNWM----RYTQTVDIWSVGC  214 (367)
T ss_dssp             HHTT--EECCCCCGGGEEECTTC----CEEECCCTTCEECCSSCCSSCSCGGGCCTHHHHTTT----CCCTTHHHHHHHH
T ss_pred             HHCC--ccccCcCHHHEEEcCCC----CEEEEeeecccccccccCcCcCCCCcCCHHHHhCCC----CCChhhhHHHHHH
Confidence            9999  99999999999998776    69999999998765432  34666777777553311    1122457788888


Q ss_pred             eheecccCC
Q 024842          254 LMRELMFGR  262 (262)
Q Consensus       254 ~~~~l~~G~  262 (262)
                      ++++|++|+
T Consensus       215 il~ell~g~  223 (367)
T 1cm8_A          215 IMAEMITGK  223 (367)
T ss_dssp             HHHHHHHSS
T ss_pred             HHHHHHhCC
Confidence            888877774

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=100.00  E-value=1.7e-34  Score=249.05  Aligned_cols=193  Identities=23%  Similarity=0.255  Sum_probs=145.7

Q ss_pred             ecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc---chHHHHHHHHHHHHh
Q 024842           23 INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ---NNEQLEMVREEIRVS   99 (262)
Q Consensus        23 ~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~---~~~~~~~~~~E~~~l   99 (262)
                      +..++|++.+.||+|+||.||+|++..+++                      .||+|.+...   .......+.+|+.++
T Consensus       145 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~----------------------~vaiK~~~~~~~~~~~~~~~~~~e~~~l  202 (446)
T 4ejn_A          145 VTMNEFEYLKLLGKGTFGKVILVKEKATGR----------------------YYAMKILKKEVIVAKDEVAHTLTENRVL  202 (446)
T ss_dssp             CCGGGEEEEEEEEEETTEEEEEEEETTTCC----------------------EEEEEEEEHHHHC-------------CC
T ss_pred             CChHHcEEeEEEeeCcCEEEEEEEEcCCCC----------------------EEEEEEEEhhhhhhhHHHHHHHHHHHHH
Confidence            345789999999999999999999887655                      5777766432   333446677899999


Q ss_pred             hhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHc-C
Q 024842          100 SLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHS-L  178 (262)
Q Consensus       100 ~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~-~  178 (262)
                      +.++||||+++++++          ...+..+++|||+.+++|.+++.    ....+++..++.++.|++.||+|||+ .
T Consensus       203 ~~l~h~~iv~l~~~~----------~~~~~~~lv~e~~~~~~L~~~l~----~~~~~~~~~~~~~~~qi~~aL~~LH~~~  268 (446)
T 4ejn_A          203 QNSRHPFLTALKYSF----------QTHDRLCFVMEYANGGELFFHLS----RERVFSEDRARFYGAEIVSALDYLHSEK  268 (446)
T ss_dssp             CCCSCTTSCCEEEEE----------EETTEEEEEECCCSSCBHHHHHH----HHSCCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HhCCCCeEeeEEEEE----------eeCCEEEEEEeeCCCCcHHHHHH----hcCCCCHHHHHHHHHHHHHHHHHHhhcC
Confidence            999999999999987          33667999999999999998886    34569999999999999999999998 8


Q ss_pred             CCCeeecCCCCCcEEEecCCCCCCceEEeeccceeecccc-----CccCcccCCcccchhhhhhhhhhhhhcCcccchhe
Q 024842          179 EPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSK-----FALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQI  253 (262)
Q Consensus       179 ~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~-----~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~  253 (262)
                      +  |+||||||+|||++.++    .+||+|||+|......     ...+++.|.+||.+....     .....|+||+|+
T Consensus       269 g--iiHrDlkp~NIll~~~~----~~kl~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-----~~~~~DiwslG~  337 (446)
T 4ejn_A          269 N--VVYRDLKLENLMLDKDG----HIKITDFGLCKEGIKDGATMKTFCGTPEYLAPEVLEDND-----YGRAVDWWGLGV  337 (446)
T ss_dssp             C--CCCCCCCGGGEEECSSS----CEEECCCCCCCTTCC-----CCSSSCGGGCCHHHHHTSC-----CCTHHHHHHHHH
T ss_pred             C--EEECCCCHHHEEECCCC----CEEEccCCCceeccCCCcccccccCCccccCHhhcCCCC-----CCCccchhhhHH
Confidence            8  99999999999998776    6999999999754322     235777888887553322     122357888888


Q ss_pred             eheecccCC
Q 024842          254 LMRELMFGR  262 (262)
Q Consensus       254 ~~~~l~~G~  262 (262)
                      ++|+|++|+
T Consensus       338 il~ell~g~  346 (446)
T 4ejn_A          338 VMYEMMCGR  346 (446)
T ss_dssp             HHHHHHHSS
T ss_pred             HHHHHhhCC
Confidence            888887774

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*

Probab=100.00  E-value=3.4e-34  Score=236.56  Aligned_cols=195  Identities=22%  Similarity=0.267  Sum_probs=137.9

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc-hHHHHHHHHHHHHhhhCC
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN-NEQLEMVREEIRVSSLFS  103 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~-~~~~~~~~~E~~~l~~l~  103 (262)
                      .++|++.+.||+|+||.||+|.+..+++                      .||+|++.... ....+.+.+|+.+++.++
T Consensus         4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~----------------------~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~   61 (317)
T 2pmi_A            4 SSQFKQLEKLGNGTYATVYKGLNKTTGV----------------------YVALKEVKLDSEEGTPSTAIREISLMKELK   61 (317)
T ss_dssp             ---------------CEEEEEECSSSCC----------------------EEEEEEEECCSTTCSCHHHHHHHHHHTTCC
T ss_pred             ccceeEeeEECCCCCEEEEEEEECCCCc----------------------EEEEEEeecccccccHHHHHHHHHHHHhcC
Confidence            4689999999999999999999877655                      56777665432 222356778999999999


Q ss_pred             CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhc--CCCCCHHHHHHHHHHHHHHHHHHHcCCCC
Q 024842          104 HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTK--KEFFSTSDVLQIFYQICAGLKHMHSLEPP  181 (262)
Q Consensus       104 h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~--~~~~~~~~~~~i~~ql~~~l~~lH~~~~~  181 (262)
                      ||||+++++++          ......+++||++. ++|.+++......  ...+++..++.++.|++.||.|||+++  
T Consensus        62 hp~iv~~~~~~----------~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~~--  128 (317)
T 2pmi_A           62 HENIVRLYDVI----------HTENKLTLVFEFMD-NDLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGLAFCHENK--  128 (317)
T ss_dssp             BTTBCCEEEEE----------CCTTEEEEEEECCC-CBHHHHHHHHHSSSCCCCCCHHHHHHHHHHHHHHHHHHHHTT--
T ss_pred             CCCcceEEEEE----------EECCeEEEEEEecC-CCHHHHHHhccccccccCCCHHHHHHHHHHHHHHHHHHHHCC--
Confidence            99999999987          34677999999988 5898887654321  245899999999999999999999998  


Q ss_pred             eeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-----ccCcccCCcccchhhhhhhhhhhhhcCcccchheehe
Q 024842          182 YAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMR  256 (262)
Q Consensus       182 ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~  256 (262)
                      |+||||||+||+++.++    .+||+|||++.....+.     ..++..|.+||.+....    ......|+|++|+++|
T Consensus       129 ivH~Dlkp~NIl~~~~~----~~kl~Dfg~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~----~~~~~~DiwslG~il~  200 (317)
T 2pmi_A          129 ILHRDLKPQNLLINKRG----QLKLGDFGLARAFGIPVNTFSSEVVTLWYRAPDVLMGSR----TYSTSIDIWSCGCILA  200 (317)
T ss_dssp             EECCCCCGGGEEECTTC----CEEECCCSSCEETTSCCCCCCCCCSCCTTCCHHHHTTCC----CCCTHHHHHHHHHHHH
T ss_pred             eeeCCCChHHeEEcCCC----CEEECcCccceecCCCcccCCCCcccccccCchHhhCCC----CCCcHHHHHHHHHHHH
Confidence            99999999999998776    69999999998764321     24566777777553211    1112357888888888


Q ss_pred             ecccCC
Q 024842          257 ELMFGR  262 (262)
Q Consensus       257 ~l~~G~  262 (262)
                      +|++|+
T Consensus       201 el~~g~  206 (317)
T 2pmi_A          201 EMITGK  206 (317)
T ss_dssp             HHHHSS
T ss_pred             HHHhCC
Confidence            887774

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}

Probab=100.00  E-value=4.6e-34  Score=240.38  Aligned_cols=203  Identities=18%  Similarity=0.264  Sum_probs=151.4

Q ss_pred             ecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc-chHHHHHHHHHHHHhhh
Q 024842           23 INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ-NNEQLEMVREEIRVSSL  101 (262)
Q Consensus        23 ~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~-~~~~~~~~~~E~~~l~~  101 (262)
                      +..++|++.+.||+|+||.||+|++......                 ..+..||+|++... .......+.+|+.+++.
T Consensus        68 ~~~~~~~~~~~LG~G~fg~Vy~~~~~~~~~~-----------------~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~  130 (367)
T 3l9p_A           68 VPRKNITLIRGLGHGAFGEVYEGQVSGMPND-----------------PSPLQVAVKTLPEVCSEQDELDFLMEALIISK  130 (367)
T ss_dssp             CCGGGEEEEEECCCCSSSCEEEEEECC----------------------CCEEEEEEECCSSCCHHHHHHHHHHHHHHHH
T ss_pred             cCHhHeEEeeEeeeCCCEEEEEEEEccCCCC-----------------CcceeEEEEecccccChhhHHHHHHHHHHHHh
Confidence            4468999999999999999999996543211                 12347888887544 34445678899999999


Q ss_pred             CCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhh---cCCCCCHHHHHHHHHHHHHHHHHHHcC
Q 024842          102 FSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQT---KKEFFSTSDVLQIFYQICAGLKHMHSL  178 (262)
Q Consensus       102 l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~---~~~~~~~~~~~~i~~ql~~~l~~lH~~  178 (262)
                      ++||||+++++++          ......+++|||+.+++|.+++.....   ....+++..++.++.|++.||.|||++
T Consensus       131 l~hpnIv~~~~~~----------~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~  200 (367)
T 3l9p_A          131 FNHQNIVRCIGVS----------LQSLPRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEEN  200 (367)
T ss_dssp             CCCTTBCCEEEEE----------CSSSSCEEEEECCTTEEHHHHHHHHSCCSSSCCCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCCCCeEEEEE----------ecCCCCEEEEEeCCCCCHHHHHHhhccccCccccccHHHHHHHHHHHHHHHHHHHhC
Confidence            9999999999987          345668999999999999999875432   124589999999999999999999999


Q ss_pred             CCCeeecCCCCCcEEEecCCCCCCceEEeeccceeecccc-------CccCcccCCcccchhhhhhhhhhhhhcCcccch
Q 024842          179 EPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSK-------FALGQRRYSCRNGLLSIVLHLSELLSCGTVRVI  251 (262)
Q Consensus       179 ~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~-------~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~  251 (262)
                      +  |+||||||+|||++.++.. ..+||+|||++......       ...++..|.+||.+....     .....||||+
T Consensus       201 ~--ivHrDlkp~NIll~~~~~~-~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~-----~~~~~Dvwsl  272 (367)
T 3l9p_A          201 H--FIHRDIAARNCLLTCPGPG-RVAKIGDFGMARDIYRAGYYRKGGCAMLPVKWMPPEAFMEGI-----FTSKTDTWSF  272 (367)
T ss_dssp             T--CCCSCCCGGGEEESCSSTT-CCEEECCCHHHHHHHHHSSCTTCCGGGSCGGGCCHHHHHHCC-----CCHHHHHHHH
T ss_pred             C--eeCCCCChhhEEEecCCCC-ceEEECCCccccccccccccccCCCcCCcccEECHHHhcCCC-----CCcHHHHHHH
Confidence            9  9999999999999865422 26999999999754221       123456677777442221     1123466666


Q ss_pred             heeheeccc
Q 024842          252 QILMRELMF  260 (262)
Q Consensus       252 g~~~~~l~~  260 (262)
                      |++++||++
T Consensus       273 G~il~ellt  281 (367)
T 3l9p_A          273 GVLLWEIFS  281 (367)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHh
Confidence            666666665

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A

Probab=100.00  E-value=1.7e-33  Score=229.51  Aligned_cols=205  Identities=20%  Similarity=0.205  Sum_probs=157.9

Q ss_pred             CCCCceeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc--chHHHHHHH
Q 024842           16 NGGGDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ--NNEQLEMVR   93 (262)
Q Consensus        16 ~~~~~~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~--~~~~~~~~~   93 (262)
                      .........+..|++.+.||+|+||.||+|.+..++.                      .+++|.+...  .....+.+.
T Consensus        16 ~~~~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~----------------------~va~k~~~~~~~~~~~~~~~~   73 (290)
T 1t4h_A           16 TKAVGMSNDGRFLKFDIEIGRGSFKTVYKGLDTETTV----------------------EVAWCELQDRKLTKSERQRFK   73 (290)
T ss_dssp             --CCEECTTSCEEEEEEEEEECSSEEEEEEEETTTCC----------------------EEEEEEEEGGGSCHHHHHHHH
T ss_pred             hhhhhcccCceeEEeeeeccCCCCeEEEEeEecCCce----------------------EEEEEEecchhhCHHHHHHHH
Confidence            3333444556789999999999999999999887655                      5666665433  344567889


Q ss_pred             HHHHHhhhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHH
Q 024842           94 EEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLK  173 (262)
Q Consensus        94 ~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~  173 (262)
                      +|+.+++.++||||+++++++..      ........+++||++.+++|.+++.    ....+++..++.++.|++.||.
T Consensus        74 ~e~~~l~~l~h~~iv~~~~~~~~------~~~~~~~~~lv~e~~~~~~L~~~l~----~~~~~~~~~~~~~~~qi~~~l~  143 (290)
T 1t4h_A           74 EEAEMLKGLQHPNIVRFYDSWES------TVKGKKCIVLVTELMTSGTLKTYLK----RFKVMKIKVLRSWCRQILKGLQ  143 (290)
T ss_dssp             HHHHHHTTCCCTTBCCEEEEEEE------ESSSCEEEEEEEECCCSCBHHHHHH----HHSSCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCCeeeeeeeecc------ccCCCceEEEEEEecCCCCHHHHHH----HccCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999987631      1123466899999999999999986    3355999999999999999999


Q ss_pred             HHHcCCCCeeecCCCCCcEEEe-cCCCCCCceEEeeccceeeccccC---ccCcccCCcccchhhhhhhhhhhhhcCccc
Q 024842          174 HMHSLEPPYAHNDVKPGNILIT-CRKGQPPLAILMDFGSARPAQSKF---ALGQRRYSCRNGLLSIVLHLSELLSCGTVR  249 (262)
Q Consensus       174 ~lH~~~~~ivH~dikp~Nill~-~~~~~~~~~kl~Dfg~a~~~~~~~---~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~  249 (262)
                      |||+.+.+++|+||||+||+++ .++    .+||+|||++.......   ..+++.|.+||.+..      ......|+|
T Consensus       144 ~lH~~~~~i~H~dikp~Nil~~~~~~----~~kl~Dfg~~~~~~~~~~~~~~~t~~y~aPE~~~~------~~~~~~Di~  213 (290)
T 1t4h_A          144 FLHTRTPPIIHRDLKCDNIFITGPTG----SVKIGDLGLATLKRASFAKAVIGTPEFMAPEMYEE------KYDESVDVY  213 (290)
T ss_dssp             HHHTSSSCCCCSCCCGGGEEESSTTS----CEEECCTTGGGGCCTTSBEESCSSCCCCCGGGGGT------CCCTHHHHH
T ss_pred             HHHcCCCCEEECCCCHHHEEEECCCC----CEEEeeCCCcccccccccccccCCcCcCCHHHHhc------cCCCcchHH
Confidence            9999766799999999999997 444    69999999997554332   357778888884421      122246788


Q ss_pred             chheeheecccCC
Q 024842          250 VIQILMRELMFGR  262 (262)
Q Consensus       250 ~~g~~~~~l~~G~  262 (262)
                      ++|+++++|++|+
T Consensus       214 slG~~l~~l~~g~  226 (290)
T 1t4h_A          214 AFGMCMLEMATSE  226 (290)
T ss_dssp             HHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHhCC
Confidence            8888888887774

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}

Probab=100.00  E-value=7.4e-34  Score=233.76  Aligned_cols=191  Identities=26%  Similarity=0.316  Sum_probs=148.9

Q ss_pred             CceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc--hHHHHHHHHHHHHhhhCC
Q 024842           26 NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN--NEQLEMVREEIRVSSLFS  103 (262)
Q Consensus        26 ~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~--~~~~~~~~~E~~~l~~l~  103 (262)
                      ++|++.+.||+|+||.||+|++..+++                      .+|+|++....  ....+.+.+|+.+++.++
T Consensus         3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~----------------------~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~   60 (311)
T 4agu_A            3 EKYEKIGKIGEGSYGVVFKCRNRDTGQ----------------------IVAIKKFLESEDDPVIKKIALREIRMLKQLK   60 (311)
T ss_dssp             CCEEEEEEEEECSSEEEEEEEETTTCC----------------------EEEEEEECCCCC-HHHHHHHHHHHHHHHHCC
T ss_pred             ccceEeeEEeecCCeEEEEEEeCCCCc----------------------EEEEEEeeccccchHHHHHHHHHHHHHHhCC
Confidence            689999999999999999999987655                      67777664442  333567889999999999


Q ss_pred             CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCee
Q 024842          104 HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYA  183 (262)
Q Consensus       104 h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~iv  183 (262)
                      ||||+++++++          ......+++||++.+++|.+++.    ....+++..++.++.|++.||.|||+.+  ++
T Consensus        61 h~~i~~~~~~~----------~~~~~~~lv~e~~~~~~l~~~~~----~~~~~~~~~~~~i~~~l~~~l~~lH~~~--iv  124 (311)
T 4agu_A           61 HPNLVNLLEVF----------RRKRRLHLVFEYCDHTVLHELDR----YQRGVPEHLVKSITWQTLQAVNFCHKHN--CI  124 (311)
T ss_dssp             CTTBCCEEEEE----------EETTEEEEEEECCSEEHHHHHHH----TSSCCCHHHHHHHHHHHHHHHHHHHHTT--EE
T ss_pred             CCCccchhhee----------ecCCeEEEEEEeCCCchHHHHHh----hhcCCCHHHHHHHHHHHHHHHHHHHHCC--Cc
Confidence            99999999987          33567899999999999988765    4556999999999999999999999999  99


Q ss_pred             ecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-----ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheec
Q 024842          184 HNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMREL  258 (262)
Q Consensus       184 H~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l  258 (262)
                      ||||||+||+++.++    .++|+|||++.......     ..++..|.+||.+.+-.    ......|+|++|+++++|
T Consensus       125 H~dlkp~Nil~~~~~----~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~----~~~~~~Di~slG~il~~l  196 (311)
T 4agu_A          125 HRDVKPENILITKHS----VIKLCDFGFARLLTGPSDYYDDEVATRWYRSPELLVGDT----QYGPPVDVWAIGCVFAEL  196 (311)
T ss_dssp             CCCCSGGGEEECTTS----CEEECCCTTCEECC------------GGGCCHHHHHTCS----CCCTHHHHHHHHHHHHHH
T ss_pred             CCCCChhhEEEcCCC----CEEEeeCCCchhccCcccccCCCcCCccccChHHHhcCC----CCCcchhhHHHHHHHHHH
Confidence            999999999998776    69999999998765322     24556677766543211    111235777777777777


Q ss_pred             ccCC
Q 024842          259 MFGR  262 (262)
Q Consensus       259 ~~G~  262 (262)
                      ++|+
T Consensus       197 ~~g~  200 (311)
T 4agu_A          197 LSGV  200 (311)
T ss_dssp             HHSS
T ss_pred             HhCC
Confidence            7764

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}

Probab=100.00  E-value=1.2e-33  Score=239.18  Aligned_cols=204  Identities=20%  Similarity=0.295  Sum_probs=154.9

Q ss_pred             eeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc-chHHHHHHHHHHHHh
Q 024842           21 VWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ-NNEQLEMVREEIRVS   99 (262)
Q Consensus        21 ~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~-~~~~~~~~~~E~~~l   99 (262)
                      ..+..++|++.+.||+|+||.||+|++..+++..               ......+|+|++... .....+.+.+|+.++
T Consensus        64 ~~i~~~~y~i~~~LG~G~~g~Vy~a~~~~~~~~~---------------~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l  128 (382)
T 3tt0_A           64 WELPRDRLVLGKPLGEGAFGQVVLAEAIGLDKDK---------------PNRVTKVAVKMLKSDATEKDLSDLISEMEMM  128 (382)
T ss_dssp             TBCCGGGEEEEEEEEECSSEEEEEEEEETSSTTC---------------TTCEEEEEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred             cccchhheEeeeEEecCCCeEEEEEEEccccccc---------------cccceEEEEEeeccccCHHHHHHHHHHHHHH
Confidence            3456789999999999999999999986543311               112346888887654 344457788999999


Q ss_pred             hhC-CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhh------------cCCCCCHHHHHHHHH
Q 024842          100 SLF-SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQT------------KKEFFSTSDVLQIFY  166 (262)
Q Consensus       100 ~~l-~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~------------~~~~~~~~~~~~i~~  166 (262)
                      +.+ +||||+++++++          ......+++||++.+++|.+++.....            ....+++..++.++.
T Consensus       129 ~~l~~hpnIv~~~~~~----------~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~  198 (382)
T 3tt0_A          129 KMIGKHKNIINLLGAC----------TQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAY  198 (382)
T ss_dssp             HHHCCCTTBCCEEEEE----------CSSSSCEEEEECCTTCBHHHHHHHTCCSSSSSCCCCCSSCCCCCCHHHHHHHHH
T ss_pred             HHhcCCchhhhheeee----------ccCCceEEEEEecCCCcHHHHHHHhcccccccccccccccccccCHHHHHHHHH
Confidence            999 899999999987          346678999999999999999875331            124599999999999


Q ss_pred             HHHHHHHHHHcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-------ccCcccCCcccchhhhhhhh
Q 024842          167 QICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-------ALGQRRYSCRNGLLSIVLHL  239 (262)
Q Consensus       167 ql~~~l~~lH~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-------~~~~~~~~~~~d~~s~g~~~  239 (262)
                      |++.||.|||+.+  |+||||||+|||++.++    .+||+|||++.......       ..++..|.+||.+....   
T Consensus       199 qi~~aL~~LH~~~--ivH~Dlkp~NIll~~~~----~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~---  269 (382)
T 3tt0_A          199 QVARGMEYLASKK--CIHRDLAARNVLVTEDN----VMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRI---  269 (382)
T ss_dssp             HHHHHHHHHHHTT--CCCSCCCGGGEEECTTC----CEEECSCSCCCCSSCCCTTCCCTTCCCGGGGSCHHHHHSCC---
T ss_pred             HHHHHHHHHHhCC--EecCCCCcceEEEcCCC----cEEEcccCcccccccccccccccCCCCCcceeCHHHhcCCC---
Confidence            9999999999998  99999999999998776    69999999998654322       13345577776442211   


Q ss_pred             hhhhhcCcccchheeheeccc
Q 024842          240 SELLSCGTVRVIQILMRELMF  260 (262)
Q Consensus       240 ~e~~~~~~v~~~g~~~~~l~~  260 (262)
                        .....||||+|+++++|++
T Consensus       270 --~~~~~DiwslG~il~ellt  288 (382)
T 3tt0_A          270 --YTHQSDVWSFGVLLWEIFT  288 (382)
T ss_dssp             --CCHHHHHHHHHHHHHHHHT
T ss_pred             --CCchhHHHHHHHHHHHHHh
Confidence              1123466666666666665

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}

Probab=100.00  E-value=2.7e-33  Score=235.01  Aligned_cols=196  Identities=19%  Similarity=0.279  Sum_probs=152.7

Q ss_pred             cCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCC
Q 024842           24 NENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFS  103 (262)
Q Consensus        24 ~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~  103 (262)
                      ..++|++.+.||+|+||.||+|++..+++                      .||+|++... ....+....|+.+++.++
T Consensus        33 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~----------------------~vavK~~~~~-~~~~~~~~~e~~~l~~l~   89 (360)
T 3llt_A           33 LNNAFLVIRKMGDGTFGRVLLCQHIDNKK----------------------YYAVKVVRNI-KKYTRSAKIEADILKKIQ   89 (360)
T ss_dssp             ETTTEEEEEEEEECSSEEEEEEEETTTCC----------------------EEEEEEECSC-HHHHHHHHHHHHHHHHTC
T ss_pred             ecCEEEEEEEEcccCCeEEEEEEECCCCe----------------------EEEEEEeccc-hhhhhhhHHHHHHHHHhc
Confidence            37899999999999999999999876654                      6788876532 333456777899998886


Q ss_pred             -----CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcC
Q 024842          104 -----HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSL  178 (262)
Q Consensus       104 -----h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~  178 (262)
                           ||||+++++.+.          ..+..+++||++ +++|.+++...  ....+++..++.++.||+.||.|||++
T Consensus        90 ~~~~~h~~iv~~~~~~~----------~~~~~~lv~e~~-~~~L~~~~~~~--~~~~~~~~~~~~i~~qi~~aL~~LH~~  156 (360)
T 3llt_A           90 NDDINNNNIVKYHGKFM----------YYDHMCLIFEPL-GPSLYEIITRN--NYNGFHIEDIKLYCIEILKALNYLRKM  156 (360)
T ss_dssp             CCSTTGGGBCCEEEEEE----------ETTEEEEEECCC-CCBHHHHHHHT--TTCCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ccCCCCCCeecccceee----------ECCeeEEEEcCC-CCCHHHHHHhc--CCCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence                 999999999873          356799999998 99999988632  223489999999999999999999999


Q ss_pred             CCCeeecCCCCCcEEEecCC---------------------CCCCceEEeeccceeecccc--CccCcccCCcccchhhh
Q 024842          179 EPPYAHNDVKPGNILITCRK---------------------GQPPLAILMDFGSARPAQSK--FALGQRRYSCRNGLLSI  235 (262)
Q Consensus       179 ~~~ivH~dikp~Nill~~~~---------------------~~~~~~kl~Dfg~a~~~~~~--~~~~~~~~~~~~d~~s~  235 (262)
                      +  |+||||||+|||++.+.                     .....+||+|||++......  ...++..|.+||.+...
T Consensus       157 ~--ivHrDlkp~NIll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~~~~~~~gt~~y~aPE~~~~~  234 (360)
T 3llt_A          157 S--LTHTDLKPENILLDDPYFEKSLITVRRVTDGKKIQIYRTKSTGIKLIDFGCATFKSDYHGSIINTRQYRAPEVILNL  234 (360)
T ss_dssp             T--EECSCCSGGGEEESCTTCCEEEEEEECTTTCCEEEEEEESCCCEEECCCTTCEETTSCCCSCCSCGGGCCHHHHTTC
T ss_pred             C--eeeCCCCcccEEEccccccccccchhcccccccccccccCCCCEEEEeccCceecCCCCcCccCcccccCcHHHcCC
Confidence            9  99999999999997421                     01226999999999875543  23567778888765433


Q ss_pred             hhhhhhhhhcCcccchheeheecccCC
Q 024842          236 VLHLSELLSCGTVRVIQILMRELMFGR  262 (262)
Q Consensus       236 g~~~~e~~~~~~v~~~g~~~~~l~~G~  262 (262)
                      .+     ....||||+|+++|+|++|+
T Consensus       235 ~~-----~~~~DiwslG~il~ell~g~  256 (360)
T 3llt_A          235 GW-----DVSSDMWSFGCVLAELYTGS  256 (360)
T ss_dssp             CC-----CTTHHHHHHHHHHHHHHHSS
T ss_pred             CC-----CCccchHHHHHHHHHHHHCC
Confidence            21     22467888888888888774

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*

Probab=100.00  E-value=5.3e-34  Score=239.14  Aligned_cols=206  Identities=18%  Similarity=0.248  Sum_probs=155.4

Q ss_pred             CceeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc-chHHHHHHHHHHH
Q 024842           19 GDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ-NNEQLEMVREEIR   97 (262)
Q Consensus        19 ~~~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~-~~~~~~~~~~E~~   97 (262)
                      ....+..++|++.+.||+|+||.||+|++......                 ..++.||+|++... .....+.+.+|+.
T Consensus        15 ~~~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~-----------------~~~~~vavK~~~~~~~~~~~~~~~~E~~   77 (359)
T 3vhe_A           15 SKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKT-----------------ATCRTVAVKMLKEGATHSEHRALMSELK   77 (359)
T ss_dssp             HHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSST-----------------TCEEEEEEEEECTTCCHHHHHHHHHHHH
T ss_pred             ccccccccceeeceeecCCCCceEEEEEecccccc-----------------ccceEEEEEEecCcCCHHHHHHHHHHHH
Confidence            34456678999999999999999999996543211                 13457899988654 3344567899999


Q ss_pred             HhhhC-CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhc------------------------
Q 024842           98 VSSLF-SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTK------------------------  152 (262)
Q Consensus        98 ~l~~l-~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~------------------------  152 (262)
                      +++.+ +||||+++++++.         ......+++|||+.+++|.+++......                        
T Consensus        78 ~l~~l~~hpniv~~~~~~~---------~~~~~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (359)
T 3vhe_A           78 ILIHIGHHLNVVNLLGACT---------KPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKTKGARFRQGKDYVGAIPVD  148 (359)
T ss_dssp             HHHHHCCCTTBCCEEEEEC---------STTSCCEEEEECCTTEEHHHHHHTTTTSBCSCC-------------------
T ss_pred             HHHhhcCCcceeeeeeeee---------cCCCceEEEEEecCCCcHHHHHHhccccccccccccchhhcccccccccchh
Confidence            99999 7899999999873         2244589999999999999998743221                        


Q ss_pred             --------------------------------------CCCCCHHHHHHHHHHHHHHHHHHHcCCCCeeecCCCCCcEEE
Q 024842          153 --------------------------------------KEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILI  194 (262)
Q Consensus       153 --------------------------------------~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~dikp~Nill  194 (262)
                                                            ...+++..++.++.|++.||.|||+++  |+||||||+|||+
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~LH~~~--ivH~Dikp~NIll  226 (359)
T 3vhe_A          149 LKRRLDSITSSQSSASSGFVEEKSLSDVEEEEAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRK--CIHRDLAARNILL  226 (359)
T ss_dssp             -----------------------------------CTTTTCBCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCSGGGEEE
T ss_pred             hhccccccCccccccccccccccccchhhhcccccchhccccCHHHHHHHHHHHHHHHHHHHHCC--cccCCCChhhEEE
Confidence                                                  122899999999999999999999999  9999999999999


Q ss_pred             ecCCCCCCceEEeeccceeeccccC-------ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheeccc-C
Q 024842          195 TCRKGQPPLAILMDFGSARPAQSKF-------ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMF-G  261 (262)
Q Consensus       195 ~~~~~~~~~~kl~Dfg~a~~~~~~~-------~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~-G  261 (262)
                      +.++    .+||+|||++.......       ..++..|.+||.+....     .....||||+|+++|+|++ |
T Consensus       227 ~~~~----~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~-----~~~~~Di~slG~il~ellt~g  292 (359)
T 3vhe_A          227 SEKN----VVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRV-----YTIQSDVWSFGVLLWEIFSLG  292 (359)
T ss_dssp             CGGG----CEEECCCGGGSCTTSCTTCEEC--CEECGGGCCHHHHHHCC-----CCHHHHHHHHHHHHHHHTTTS
T ss_pred             cCCC----cEEEEeccceeeecccccchhccccCCCceeEChhhhcCCC-----CCchhhhhhHHHHHHHHHhcC
Confidence            8776    69999999998653321       23455677777443221     1123567777777777765 5

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=5.7e-34  Score=241.54  Aligned_cols=192  Identities=22%  Similarity=0.345  Sum_probs=141.8

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc--chHHHHHHHHHHHHhhhC
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ--NNEQLEMVREEIRVSSLF  102 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~--~~~~~~~~~~E~~~l~~l  102 (262)
                      .++|++.+.||+|+||.||+|.+..+++                      .||+|++...  .....+.+.+|+.+++.+
T Consensus         8 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~----------------------~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l   65 (388)
T 3oz6_A            8 LRKYELVKKLGKGAYGIVWKSIDRRTGE----------------------VVAVKKIFDAFQNSTDAQRTFREIMILTEL   65 (388)
T ss_dssp             HTTEEEEEC-------CEEEEEETTTCC----------------------EEEEEEECC--CCHHHHHHHHHHHHHHHHT
T ss_pred             cCceEEEEEeeeCCCeEEEEEEECCCCC----------------------EEEEEEecccccChHHHHHHHHHHHHHHhc
Confidence            4689999999999999999999987765                      5777766432  445567788999999999


Q ss_pred             C-CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCC
Q 024842          103 S-HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPP  181 (262)
Q Consensus       103 ~-h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~  181 (262)
                      . ||||+++++++..        ......|++|||+. ++|.+++.     ...+++..++.++.|++.||+|||+.+  
T Consensus        66 ~~h~niv~l~~~~~~--------~~~~~~~lv~e~~~-~~L~~~~~-----~~~~~~~~~~~i~~qi~~~L~~LH~~~--  129 (388)
T 3oz6_A           66 SGHENIVNLLNVLRA--------DNDRDVYLVFDYME-TDLHAVIR-----ANILEPVHKQYVVYQLIKVIKYLHSGG--  129 (388)
T ss_dssp             TTCTTBCCEEEEEEC--------TTSSCEEEEEECCS-EEHHHHHH-----HTCCCHHHHHHHHHHHHHHHHHHHHTT--
T ss_pred             cCCCCCCeeeeEEec--------CCCCEEEEEecccC-cCHHHHHH-----cCCCCHHHHHHHHHHHHHHHHHHHhCC--
Confidence            7 9999999998731        33456899999987 58888775     235999999999999999999999999  


Q ss_pred             eeecCCCCCcEEEecCCCCCCceEEeeccceeecccc--------------------------CccCcccCCcccchhhh
Q 024842          182 YAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSK--------------------------FALGQRRYSCRNGLLSI  235 (262)
Q Consensus       182 ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~--------------------------~~~~~~~~~~~~d~~s~  235 (262)
                      |+||||||+|||++.++    .+||+|||+|......                          ...+++.|.+||-+...
T Consensus       130 ivHrDlkp~NIll~~~~----~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~  205 (388)
T 3oz6_A          130 LLHRDMKPSNILLNAEC----HVKVADFGLSRSFVNIRRVTNNIPLSINENTENFDDDQPILTDYVATRWYRAPEILLGS  205 (388)
T ss_dssp             EECCCCCGGGEEECTTC----CEEECCCTTCEESSSCCCCCCCGGGCCC---------------CCCGGGGCCHHHHTTC
T ss_pred             EEeCCCCHHHeEEcCCC----CEEecCCcccccccccccccccccccccccccccccccccccCCcccCCcCCHHHhcCC
Confidence            99999999999998776    6999999999865321                          12455666666654321


Q ss_pred             hhhhhhhhhcCcccchheeheecccCC
Q 024842          236 VLHLSELLSCGTVRVIQILMRELMFGR  262 (262)
Q Consensus       236 g~~~~e~~~~~~v~~~g~~~~~l~~G~  262 (262)
                      .    ......|+||+|++++||++|+
T Consensus       206 ~----~~~~~~DiwSlG~il~ell~g~  228 (388)
T 3oz6_A          206 T----KYTKGIDMWSLGCILGEILCGK  228 (388)
T ss_dssp             C----CCCTHHHHHHHHHHHHHHHHSS
T ss_pred             C----CCCChhhHHHHHHHHHHHHhCC
Confidence            1    1112357888888888888774

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}

Probab=100.00  E-value=6.7e-34  Score=237.32  Aligned_cols=198  Identities=22%  Similarity=0.337  Sum_probs=154.6

Q ss_pred             ceeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc--chHHHHHHHHHHH
Q 024842           20 DVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ--NNEQLEMVREEIR   97 (262)
Q Consensus        20 ~~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~--~~~~~~~~~~E~~   97 (262)
                      .+.+.+++|++.+.||+|+||.||++.+..                       +..||+|++...  .....+.+.+|+.
T Consensus         3 ~i~~~~~~y~i~~~lG~G~~g~Vy~~~~~~-----------------------~~~vavK~~~~~~~~~~~~~~~~~E~~   59 (343)
T 3dbq_A            3 CISVKGRIYSILKQIGSGGSSKVFQVLNEK-----------------------KQIYAIKYVNLEEADNQTLDSYRNEIA   59 (343)
T ss_dssp             CEESSSCEEEEEEEESCCSSEEEEEEECTT-----------------------SCEEEEEEEECTTCCHHHHHHHHHHHH
T ss_pred             eeeeecCEEEEEEEEecCCCeEEEEEEeCC-----------------------CCEEEEEEeeccccchHHHHHHHHHHH
Confidence            456678899999999999999999998742                       236788876543  3445577899999


Q ss_pred             HhhhCCC--CCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHH
Q 024842           98 VSSLFSH--RNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHM  175 (262)
Q Consensus        98 ~l~~l~h--~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~l  175 (262)
                      +++.++|  |||+++++++          ......+++|| +.+++|.+++.    ....+++..++.++.|++.||.||
T Consensus        60 ~l~~l~~~~~~iv~~~~~~----------~~~~~~~lv~e-~~~~~L~~~l~----~~~~~~~~~~~~i~~qi~~al~~l  124 (343)
T 3dbq_A           60 YLNKLQQHSDKIIRLYDYE----------ITDQYIYMVME-CGNIDLNSWLK----KKKSIDPWERKSYWKNMLEAVHTI  124 (343)
T ss_dssp             HHHHHTTTCTTBCCEEEEE----------ECSSEEEEEEC-CCSEEHHHHHH----HSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhhcCCceEEEeeeE----------eeCCEEEEEEe-CCCCCHHHHHH----hcCCCCHHHHHHHHHHHHHHHHHH
Confidence            9999986  9999999987          33567899999 67889999886    455699999999999999999999


Q ss_pred             HcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeecccc-------CccCcccCCcccchhhhhhh------hhhh
Q 024842          176 HSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSK-------FALGQRRYSCRNGLLSIVLH------LSEL  242 (262)
Q Consensus       176 H~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~-------~~~~~~~~~~~~d~~s~g~~------~~e~  242 (262)
                      |+.+  |+||||||+|||++. +    .+||+|||++......       ...+++.|.+||.+......      ....
T Consensus       125 H~~~--iiHrDikp~NIll~~-~----~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~  197 (343)
T 3dbq_A          125 HQHG--IVHSDLKPANFLIVD-G----MLKLIDFGIANQMQPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKI  197 (343)
T ss_dssp             HHTT--CCCCCCCGGGEEEET-T----EEEECCCSSSCCC------------CCCCSSCCHHHHHHCC-----------C
T ss_pred             HhCC--eecCCCCcceEEEEC-C----cEEEeecccccccCcccccccCCCCcCCcCcCCHHHHhhccccccccccccCC
Confidence            9998  999999999999963 3    5999999999876432       23578888888876442111      0122


Q ss_pred             hhcCcccchheeheecccCC
Q 024842          243 LSCGTVRVIQILMRELMFGR  262 (262)
Q Consensus       243 ~~~~~v~~~g~~~~~l~~G~  262 (262)
                      ....||||+|+++|+|++|+
T Consensus       198 ~~~~DiwslG~il~ell~g~  217 (343)
T 3dbq_A          198 SPKSDVWSLGCILYYMTYGK  217 (343)
T ss_dssp             CHHHHHHHHHHHHHHHHHSS
T ss_pred             CchhhHHHHHHHHHHHHhCC
Confidence            23468999999999988885

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*

Probab=100.00  E-value=6.3e-34  Score=246.23  Aligned_cols=198  Identities=22%  Similarity=0.339  Sum_probs=149.3

Q ss_pred             eeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc--chHHHHHHHHHHHH
Q 024842           21 VWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ--NNEQLEMVREEIRV   98 (262)
Q Consensus        21 ~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~--~~~~~~~~~~E~~~   98 (262)
                      .+...++|++.+.||+|+||.||+|.+..+++                      .||+|++...  .....+.+.+|+.+
T Consensus        57 ~~~~~~~y~~~~~lG~G~~g~V~~a~~~~~~~----------------------~vAiK~~~~~~~~~~~~~~~~~E~~~  114 (464)
T 3ttj_A           57 TFTVLKRYQNLKPIGSGAQGIVCAAYDAVLDR----------------------NVAIKKLSRPFQNQTHAKRAYRELVL  114 (464)
T ss_dssp             EEEEETTEEEEEEEEECSSCEEEEEEETTTTE----------------------EEEEEEEESGGGSHHHHHHHHHHHHH
T ss_pred             ceeecCCeEEEEEeecCCCeEEEEEEECCCCC----------------------EEEEEEECccccChHHHHHHHHHHHH
Confidence            34446789999999999999999999987765                      5777776543  44556788899999


Q ss_pred             hhhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcC
Q 024842           99 SSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSL  178 (262)
Q Consensus        99 l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~  178 (262)
                      ++.++||||+++++++...    .........|++|||+.+ ++.+.+.      ..+++..++.++.|++.||+|||+.
T Consensus       115 l~~l~hpnIv~l~~~~~~~----~~~~~~~~~~lv~E~~~~-~l~~~~~------~~l~~~~~~~~~~qil~aL~~lH~~  183 (464)
T 3ttj_A          115 MKCVNHKNIISLLNVFTPQ----KTLEEFQDVYLVMELMDA-NLCQVIQ------MELDHERMSYLLYQMLCGIKHLHSA  183 (464)
T ss_dssp             HHHCCCTTBCCCSEEECSC----CSTTTCCEEEEEEECCSE-EHHHHHT------SCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHhCCCCCCCcEEEEEccC----CccccCCeEEEEEeCCCC-CHHHHHh------hcCCHHHHHHHHHHHHHHHHHHHHC
Confidence            9999999999999987410    000223568999999875 4555442      2389999999999999999999999


Q ss_pred             CCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC----ccCcccCCcccchhhhhhhhhhhhhcCcccchhee
Q 024842          179 EPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQIL  254 (262)
Q Consensus       179 ~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~  254 (262)
                      +  |+||||||+|||++.++    .+||+|||+|.......    ..+++.|.+||-+...++     ....||||+|++
T Consensus       184 ~--iiHrDlkp~NIll~~~~----~~kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-----~~~~DiwSlG~i  252 (464)
T 3ttj_A          184 G--IIHRDLKPSNIVVKSDC----TLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGY-----KENVDIWSVGCI  252 (464)
T ss_dssp             T--CCCCCCCGGGEEECTTS----CEEECCCCCC-----CCCC----CCCTTCCHHHHTTCCC-----CTTHHHHHHHHH
T ss_pred             C--cccCCCChHhEEEeCCC----CEEEEEEEeeeecCCCcccCCCcccccccCHHHHcCCCC-----CHHHHHHHHHHH
Confidence            9  99999999999998776    69999999998765432    356777888876644322     124578888888


Q ss_pred             heecccCC
Q 024842          255 MRELMFGR  262 (262)
Q Consensus       255 ~~~l~~G~  262 (262)
                      +++|++|+
T Consensus       253 l~ell~g~  260 (464)
T 3ttj_A          253 MGEMVRHK  260 (464)
T ss_dssp             HHHHHHSS
T ss_pred             HHHHHhCC
Confidence            88887774

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}

Probab=100.00  E-value=5.3e-34  Score=246.71  Aligned_cols=197  Identities=21%  Similarity=0.305  Sum_probs=142.5

Q ss_pred             ecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc--chHHHHHHHHHHHHhh
Q 024842           23 INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ--NNEQLEMVREEIRVSS  100 (262)
Q Consensus        23 ~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~--~~~~~~~~~~E~~~l~  100 (262)
                      ...++|++.+.||+|+||.||+|++..+++                      .||+|++...  .....+.+.+|+.+++
T Consensus        50 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~----------------------~vaiK~i~~~~~~~~~~~~~~~E~~~l~  107 (458)
T 3rp9_A           50 QIPDRYEIRHLIGTGSYGHVCEAYDKLEKR----------------------VVAIKKILRVFEDLIDCKRILREIAILN  107 (458)
T ss_dssp             CSCTTEEECCC-------CEEEEEECC--C----------------------EEEEEEECSTTSSHHHHHHHHHHHHHHH
T ss_pred             ccCCCeEEeeEeeecCCeEEEEEEECCCCc----------------------EEEEEEechhhcCHHHHHHHHHHHHHHH
Confidence            345789999999999999999999987655                      5777766432  3445678899999999


Q ss_pred             hCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCC
Q 024842          101 LFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEP  180 (262)
Q Consensus       101 ~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~  180 (262)
                      .++||||+++++++..     .........|++||++ +++|.+++.    ....+++..++.++.||+.||+|||+.+ 
T Consensus       108 ~l~h~niv~l~~~~~~-----~~~~~~~~~~lv~e~~-~~~L~~~~~----~~~~l~~~~~~~~~~qi~~aL~~LH~~~-  176 (458)
T 3rp9_A          108 RLNHDHVVKVLDIVIP-----KDVEKFDELYVVLEIA-DSDFKKLFR----TPVYLTELHIKTLLYNLLVGVKYVHSAG-  176 (458)
T ss_dssp             HCCCTTBCCEEEECCC-----SCTTTCCCEEEEECCC-SEEHHHHHH----SSCCCCHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred             hCCCCCCCceEEEEec-----CCcccCceEEEEEecc-ccchhhhcc----cCCCCCHHHHHHHHHHHHHHHHHHHhCC-
Confidence            9999999999998741     0112345689999975 578888876    5567999999999999999999999999 


Q ss_pred             CeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC--------------------------------ccCcccCCc
Q 024842          181 PYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF--------------------------------ALGQRRYSC  228 (262)
Q Consensus       181 ~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~--------------------------------~~~~~~~~~  228 (262)
                       |+||||||+|||++.++    .+||+|||+|.......                                ..+++.|.+
T Consensus       177 -iiHrDlKp~NILl~~~~----~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~a  251 (458)
T 3rp9_A          177 -ILHRDLKPANCLVNQDC----SVKVCDFGLARTVDYPENGNSQLPISPREDDMNLVTFPHTKNLKRQLTGHVVTRWYRA  251 (458)
T ss_dssp             -CBCCCCCGGGEEECTTC----CEEECCCTTCBCTTSCTTCCCCCC---------------------------CCCTTCC
T ss_pred             -cCCCCCChhhEEECCCC----CEeecccccchhccCccccccccccCccccccccccccccccccccccCCcccccccC
Confidence             99999999999998776    69999999998754221                                134556676


Q ss_pred             ccchhhhhhhhhhhhhcCcccchheeheecccC
Q 024842          229 RNGLLSIVLHLSELLSCGTVRVIQILMRELMFG  261 (262)
Q Consensus       229 ~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~G  261 (262)
                      ||.+..-.    ......||||+|+++|||++|
T Consensus       252 PE~~~~~~----~~~~~~DiwSlG~il~elltg  280 (458)
T 3rp9_A          252 PELILLQE----NYTEAIDVWSIGCIFAELLNM  280 (458)
T ss_dssp             HHHHTTCC----CCCTHHHHHHHHHHHHHHHTT
T ss_pred             hHHhhCCC----CCCcHhHHHHHHHHHHHHHHh
Confidence            66442111    011235788888888888763

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*

Probab=100.00  E-value=1.4e-33  Score=234.28  Aligned_cols=203  Identities=22%  Similarity=0.249  Sum_probs=156.2

Q ss_pred             ceeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc-chHHHHHHHHHHHH
Q 024842           20 DVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ-NNEQLEMVREEIRV   98 (262)
Q Consensus        20 ~~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~-~~~~~~~~~~E~~~   98 (262)
                      ...+..++|++.+.||+|+||.||+|.+..+++..+                 ...+++|.+... .....+.+.+|+.+
T Consensus        40 ~~~~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~-----------------~~~vavK~~~~~~~~~~~~~~~~E~~~  102 (333)
T 2i1m_A           40 KWEFPRNNLQFGKTLGAGAFGKVVEATAFGLGKEDA-----------------VLKVAVKMLKSTAHADEKEALMSELKI  102 (333)
T ss_dssp             GGBCCTTSEEEEEEEEECSSEEEEEEEETTCSSSCC-----------------CCEEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred             cccCCHHHceeeeEeccCCCcceEEEEecCCCcccc-----------------hhHHHHHhcccccChHHHHHHHHHHHH
Confidence            455678899999999999999999999887655322                 236888877654 33445778899999


Q ss_pred             hhhC-CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhc----------CCCCCHHHHHHHHHH
Q 024842           99 SSLF-SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTK----------KEFFSTSDVLQIFYQ  167 (262)
Q Consensus        99 l~~l-~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~----------~~~~~~~~~~~i~~q  167 (262)
                      ++.+ +||||+++++++          ...+..+++||++.+++|.+++......          ...+++..++.++.|
T Consensus       103 l~~l~~h~~iv~~~~~~----------~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q  172 (333)
T 2i1m_A          103 MSHLGQHENIVNLLGAC----------THGGPVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQ  172 (333)
T ss_dssp             HHHHCCCTTBCCEEEEE----------CSSSSCEEEEECCTTEEHHHHHHHHHHHHSCC-------CCCCHHHHHHHHHH
T ss_pred             HHhhcCCCCeeeEEEEE----------ecCCceEEEEecCCCCcHHHHHHHhcccccccccccccccccCHHHHHHHHHH
Confidence            9999 899999999987          3456799999999999999998754321          345899999999999


Q ss_pred             HHHHHHHHHcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-------ccCcccCCcccchhhhhhhhh
Q 024842          168 ICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-------ALGQRRYSCRNGLLSIVLHLS  240 (262)
Q Consensus       168 l~~~l~~lH~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-------~~~~~~~~~~~d~~s~g~~~~  240 (262)
                      ++.||.|||+.+  |+||||||+||+++.++    .+||+|||++.......       ..++..|.+||.+....    
T Consensus       173 i~~~l~~lH~~~--ivH~Dlkp~NIl~~~~~----~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~----  242 (333)
T 2i1m_A          173 VAQGMAFLASKN--CIHRDVAARNVLLTNGH----VAKIGDFGLARDIMNDSNYIVKGNARLPVKWMAPESIFDCV----  242 (333)
T ss_dssp             HHHHHHHHHHTT--EECSCCSGGGCEEEGGG----EEEBCCCGGGCCGGGCTTSEECSSCEECGGGSCHHHHHHCC----
T ss_pred             HHHHHHHHhcCC--cccCCcccceEEECCCC----eEEECccccccccccccceeecCCCCCCccccCHHHhccCC----
Confidence            999999999998  99999999999998777    79999999998654322       12344577776443211    


Q ss_pred             hhhhcCcccchheeheeccc
Q 024842          241 ELLSCGTVRVIQILMRELMF  260 (262)
Q Consensus       241 e~~~~~~v~~~g~~~~~l~~  260 (262)
                       .....|+||+|+++|+|++
T Consensus       243 -~~~~~Di~slG~il~el~t  261 (333)
T 2i1m_A          243 -YTVQSDVWSYGILLWEIFS  261 (333)
T ss_dssp             -CCHHHHHHHHHHHHHHHTT
T ss_pred             -CChHHHHHHHHHHHHHHHc
Confidence             1123566666666666665

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*

Probab=100.00  E-value=2.8e-34  Score=238.31  Aligned_cols=195  Identities=25%  Similarity=0.359  Sum_probs=144.5

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc--hHHHHHHHHHHHHhhhC
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN--NEQLEMVREEIRVSSLF  102 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~--~~~~~~~~~E~~~l~~l  102 (262)
                      .++|++.+.||+|+||.||+|++..+++                      .||+|++....  ....+.+.+|+.+++.+
T Consensus        33 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~----------------------~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l   90 (329)
T 3gbz_A           33 IDRYRRITKLGEGTYGEVYKAIDTVTNE----------------------TVAIKRIRLEHEEEGVPGTAIREVSLLKEL   90 (329)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEETTTTE----------------------EEEEEECCCCC--------CHHHHHHGGGC
T ss_pred             hhhEEEEEEEEecCCeEEEEEEECCCCc----------------------eEEEEEEcccccccccchhHHHHHHHHHHc
Confidence            5789999999999999999999887655                      57777765442  22345677899999999


Q ss_pred             CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCe
Q 024842          103 SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPY  182 (262)
Q Consensus       103 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~i  182 (262)
                      +||||+++++++          ......+++|||+. ++|.+++.    ....+++..++.++.|++.||.|||+++  |
T Consensus        91 ~h~~iv~~~~~~----------~~~~~~~lv~e~~~-~~L~~~~~----~~~~~~~~~~~~i~~ql~~~l~~LH~~~--i  153 (329)
T 3gbz_A           91 QHRNIIELKSVI----------HHNHRLHLIFEYAE-NDLKKYMD----KNPDVSMRVIKSFLYQLINGVNFCHSRR--C  153 (329)
T ss_dssp             CCTTBCCEEEEE----------EETTEEEEEEECCS-EEHHHHHH----HCTTCCHHHHHHHHHHHHHHHHHHHHTT--C
T ss_pred             CCCCcceEEEEE----------ecCCEEEEEEecCC-CCHHHHHh----hcCCCCHHHHHHHHHHHHHHHHHHHhCC--E
Confidence            999999999987          34677999999987 58988876    4455999999999999999999999999  9


Q ss_pred             eecCCCCCcEEEecCC-CCCCceEEeeccceeeccccC-----ccCcccCCcccchhhhhhhhhhhhhcCcccchheehe
Q 024842          183 AHNDVKPGNILITCRK-GQPPLAILMDFGSARPAQSKF-----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMR  256 (262)
Q Consensus       183 vH~dikp~Nill~~~~-~~~~~~kl~Dfg~a~~~~~~~-----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~  256 (262)
                      +||||||+|||++.++ +....+||+|||++.......     ..++..|.+||.+.....    .....||||+|+++|
T Consensus       154 vH~Dlkp~NIll~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~----~~~~~DiwslG~il~  229 (329)
T 3gbz_A          154 LHRDLKPQNLLLSVSDASETPVLKIGDFGLARAFGIPIRQFTHEIITLWYRPPEILLGSRH----YSTSVDIWSIACIWA  229 (329)
T ss_dssp             CCSCCCGGGEEEEC-----CCEEEECCTTHHHHHC-----------CCTTCCHHHHTTCCC----CCTHHHHHHHHHHHH
T ss_pred             ECCCCCHHHEEEecCCCCccceEEECcCCCccccCCcccccCCCcCCccccCHHHhcCCCC----CCcHHHHHHHHHHHH
Confidence            9999999999997554 234469999999997654321     234666777765533211    112357777777777


Q ss_pred             ecccCC
Q 024842          257 ELMFGR  262 (262)
Q Consensus       257 ~l~~G~  262 (262)
                      +|++|+
T Consensus       230 ell~g~  235 (329)
T 3gbz_A          230 EMLMKT  235 (329)
T ss_dssp             HHHHSS
T ss_pred             HHHHCC
Confidence            777764

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*

Probab=100.00  E-value=2.5e-33  Score=233.17  Aligned_cols=191  Identities=22%  Similarity=0.286  Sum_probs=153.8

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc---chHHHHHHHHHHHHhhh
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ---NNEQLEMVREEIRVSSL  101 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~---~~~~~~~~~~E~~~l~~  101 (262)
                      .++|.+.+.||+|+||.||++++..+++                      .+++|.+...   .....+.+.+|+.+++.
T Consensus        40 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~----------------------~~a~K~~~~~~~~~~~~~~~~~~E~~~l~~   97 (335)
T 2owb_A           40 RRRYVRGRFLGKGGFAKCFEISDADTKE----------------------VFAGKIVPKSLLLKPHQREKMSMEISIHRS   97 (335)
T ss_dssp             TEEEEEEEEEEEETTEEEEEEEETTTCC----------------------EEEEEEEEGGGCCSHHHHHHHHHHHHHHHT
T ss_pred             CCceEEEEEEeeCCCeEEEEEEECCCCC----------------------EEEEEEechhhhcCHHHHHHHHHHHHHHHh
Confidence            4689999999999999999999887655                      5666665433   34456778899999999


Q ss_pred             CCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCC
Q 024842          102 FSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPP  181 (262)
Q Consensus       102 l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~  181 (262)
                      ++||||+++++++          ......+++||++.+++|.+++.    ....+++..++.++.|++.||.|||+++  
T Consensus        98 l~h~~iv~~~~~~----------~~~~~~~lv~e~~~~~~L~~~~~----~~~~l~~~~~~~i~~qi~~aL~~LH~~~--  161 (335)
T 2owb_A           98 LAHQHVVGFHGFF----------EDNDFVFVVLELCRRRSLLELHK----RRKALTEPEARYYLRQIVLGCQYLHRNR--  161 (335)
T ss_dssp             CCCTTBCCEEEEE----------ECSSEEEEEECCCTTCBHHHHHH----HHCSCCHHHHHHHHHHHHHHHHHHHHTT--
T ss_pred             CCCCCCCeEEEEE----------ecCCeEEEEEecCCCCCHHHHHh----ccCCCCHHHHHHHHHHHHHHHHHHHHCC--
Confidence            9999999999987          33567999999999999999876    3355999999999999999999999999  


Q ss_pred             eeecCCCCCcEEEecCCCCCCceEEeeccceeecccc-----CccCcccCCcccchhhhhhhhhhhhhcCcccchheehe
Q 024842          182 YAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSK-----FALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMR  256 (262)
Q Consensus       182 ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~-----~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~  256 (262)
                      |+||||||+||+++.++    .+||+|||++......     ...++..|.+||.+.....     ....|+|++|+++|
T Consensus       162 ivH~dlkp~NIl~~~~~----~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-----~~~~Di~slG~il~  232 (335)
T 2owb_A          162 VIHRDLKLGNLFLNEDL----EVKIGDFGLATKVEYDGERKKVLCGTPNYIAPEVLSKKGH-----SFEVDVWSIGCIMY  232 (335)
T ss_dssp             EECSCCCGGGEEECTTC----CEEECCCTTCEECCSTTCCBCCCCSCCSSCCHHHHHTSCB-----CTHHHHHHHHHHHH
T ss_pred             CEecCCCchhEEEcCCC----CEEEeeccCceecccCcccccccCCCccccCHHHhccCCC-----CchhhHHHHHHHHH
Confidence            99999999999998776    6999999999876422     2346677888775533221     12357888888888


Q ss_pred             ecccCC
Q 024842          257 ELMFGR  262 (262)
Q Consensus       257 ~l~~G~  262 (262)
                      +|++|+
T Consensus       233 ~l~~g~  238 (335)
T 2owb_A          233 TLLVGK  238 (335)
T ss_dssp             HHHHSS
T ss_pred             HHHHCc
Confidence            877774

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...

Probab=100.00  E-value=6.3e-34  Score=239.95  Aligned_cols=196  Identities=18%  Similarity=0.266  Sum_probs=144.1

Q ss_pred             eecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc-chHHHHHHHHHHHHhh
Q 024842           22 WINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ-NNEQLEMVREEIRVSS  100 (262)
Q Consensus        22 ~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~-~~~~~~~~~~E~~~l~  100 (262)
                      .+..++|++.+.||+|+||.||+|++...++                   .+..||+|++... .....+.+.+|+.+++
T Consensus        41 ~~~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~-------------------~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~  101 (373)
T 2qol_A           41 ELDATNISIDKVVGAGEFGEVCSGRLKLPSK-------------------KEISVAIKTLKVGYTEKQRRDFLGEASIMG  101 (373)
T ss_dssp             BCCGGGCCCCEEEEECSSSEEEEC-CBCTTS-------------------CBCCEEEEECCTTCCHHHHHHHHHHHHHHT
T ss_pred             hcCHhhceeeeEEeeCCCeEEEEEEEecCCC-------------------CceeEEEEEecCccCHHHHHHHHHHHHHHH
Confidence            3456799999999999999999998764322                   2346888887654 3445578999999999


Q ss_pred             hCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCC
Q 024842          101 LFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEP  180 (262)
Q Consensus       101 ~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~  180 (262)
                      .++||||+++++++          ......+++|||+.+++|.+++..   ....+++..++.++.|++.||.|||+.+ 
T Consensus       102 ~l~h~niv~~~~~~----------~~~~~~~lv~e~~~~~sL~~~l~~---~~~~~~~~~~~~i~~qi~~aL~~LH~~~-  167 (373)
T 2qol_A          102 QFDHPNIIRLEGVV----------TKSKPVMIVTEYMENGSLDSFLRK---HDAQFTVIQLVGMLRGIASGMKYLSDMG-  167 (373)
T ss_dssp             TCCCTTBCCEEEEE----------CSSSSCEEEEECCTTCBHHHHHHT---TTTCSCHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred             hCCCCCCCeEEEEE----------eeCCceEEEEeCCCCCcHHHHHHh---CCCCCCHHHHHHHHHHHHHHHHHHHHCC-
Confidence            99999999999987          345678999999999999998862   3346999999999999999999999998 


Q ss_pred             CeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccCc--------cCcccCCcccchhhhhhhhhhhhhcCcccchh
Q 024842          181 PYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKFA--------LGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQ  252 (262)
Q Consensus       181 ~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~~--------~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g  252 (262)
                       |+||||||+|||++.++    .+||+|||++........        .++..|.+||.+..-.     .....||||+|
T Consensus       168 -ivH~Dlkp~NIll~~~~----~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-----~~~~~Dv~SlG  237 (373)
T 2qol_A          168 -YVHRDLAARNILINSNL----VCKVSDFGLGRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRK-----FTSASDVWSYG  237 (373)
T ss_dssp             -CCCSCCCGGGEEECTTC----CEEECCC----------------------CTTSCHHHHHHCC-----CCHHHHHHHHH
T ss_pred             -eeCCCCCcceEEEcCCC----CEEECcCccccccccCCccceeccCCCcCCCccChhhhccCC-----cCchhcHHHHH
Confidence             99999999999998776    699999999987653321        1234577776442211     11235677777


Q ss_pred             eeheeccc
Q 024842          253 ILMRELMF  260 (262)
Q Consensus       253 ~~~~~l~~  260 (262)
                      +++|||++
T Consensus       238 ~il~ellt  245 (373)
T 2qol_A          238 IVLWEVMS  245 (373)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHh
Confidence            77777665

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*

Probab=100.00  E-value=2.6e-34  Score=238.03  Aligned_cols=198  Identities=18%  Similarity=0.193  Sum_probs=148.8

Q ss_pred             eecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc-hHHHHHHHHHHHHhh
Q 024842           22 WINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN-NEQLEMVREEIRVSS  100 (262)
Q Consensus        22 ~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~-~~~~~~~~~E~~~l~  100 (262)
                      .+..++|++.+.||+|+||.||+|++..+++.++++                  +++|.+.... ....+.+.+|+.+++
T Consensus         9 ~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~k------------------v~~K~~~~~~~~~~~~~~~~e~~~l~   70 (325)
T 3kex_A            9 IFKETELRKLKVLGSGVFGTVHKGVWIPEGESIKIP------------------VCIKVIEDKSGRQSFQAVTDHMLAIG   70 (325)
T ss_dssp             BCCTTTEEEEEEEECCSSCEEEEEEECCTTCSCCEE------------------EEEEEECCTTSCSCBCSCCHHHHHHH
T ss_pred             hcCHhHceeeeeeeecCCceEEEEEEcCCCceEEEE------------------EEEEeccccccHHHHHHHHHHHHHHh
Confidence            345789999999999999999999998877654442                  5555543221 122245667899999


Q ss_pred             hCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCC
Q 024842          101 LFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEP  180 (262)
Q Consensus       101 ~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~  180 (262)
                      .++||||+++++++.           ....+++|+|+.+++|.+++..   ....+++..++.++.|++.||.|||+.+ 
T Consensus        71 ~l~h~~iv~~~~~~~-----------~~~~~~v~e~~~~~~L~~~l~~---~~~~~~~~~~~~~~~qi~~~l~~lH~~~-  135 (325)
T 3kex_A           71 SLDHAHIVRLLGLCP-----------GSSLQLVTQYLPLGSLLDHVRQ---HRGALGPQLLLNWGVQIAKGMYYLEEHG-  135 (325)
T ss_dssp             TCCCTTBCCEEEEEC-----------BSSEEEEEECCTTCBSHHHHHS---SGGGSCTTHHHHHHHHHHHHHHHHHHTT-
T ss_pred             cCCCCCcCeEEEEEc-----------CCccEEEEEeCCCCCHHHHHHH---ccccCCHHHHHHHHHHHHHHHHHHHhCC-
Confidence            999999999999762           4568999999999999998862   2346899999999999999999999999 


Q ss_pred             CeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-------ccCcccCCcccchhhhhhhhhhhhhcCcccchhe
Q 024842          181 PYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-------ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQI  253 (262)
Q Consensus       181 ~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-------~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~  253 (262)
                       |+||||||+|||++.++    .+||+|||++.......       ..++..|.+||.+..-.     .....|+||+|+
T Consensus       136 -ivH~Dikp~Nil~~~~~----~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-----~~~~~Di~slG~  205 (325)
T 3kex_A          136 -MVHRNLAARNVLLKSPS----QVQVADFGVADLLPPDDKQLLYSEAKTPIKWMALESIHFGK-----YTHQSDVWSYGV  205 (325)
T ss_dssp             -CCCSCCSSTTEEESSSS----CEEECSCSGGGGSCCCTTCCC-----CCTTTSCHHHHHHCC-----CCHHHHHHHHHH
T ss_pred             -CCCCccchheEEECCCC----eEEECCCCcccccCcccccccccCCCCcccccChHHhccCC-----CChhhHhHHhHH
Confidence             99999999999998776    69999999998764332       23444677776442211     112346677777


Q ss_pred             eheeccc-CC
Q 024842          254 LMRELMF-GR  262 (262)
Q Consensus       254 ~~~~l~~-G~  262 (262)
                      ++|+|++ |+
T Consensus       206 ~l~el~~~g~  215 (325)
T 3kex_A          206 TVWELMTFGA  215 (325)
T ss_dssp             HHHHHHTTSC
T ss_pred             HHHHHHhCCC
Confidence            7776666 53

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}

Probab=100.00  E-value=1.5e-33  Score=237.52  Aligned_cols=193  Identities=26%  Similarity=0.342  Sum_probs=147.9

Q ss_pred             CceEE--EEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCC
Q 024842           26 NRYRI--LRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFS  103 (262)
Q Consensus        26 ~~y~~--~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~  103 (262)
                      +.|.+  .+.||+|+||.||+|++..+++                      .+|+|++........+.+.+|+.+++.++
T Consensus        87 ~~~~~~~~~~lG~G~~g~Vy~a~~~~~g~----------------------~vavK~~~~~~~~~~~~~~~E~~~l~~l~  144 (373)
T 2x4f_A           87 SFYTVSKTEILGGGRFGQVHKCEETATGL----------------------KLAAKIIKTRGMKDKEEVKNEISVMNQLD  144 (373)
T ss_dssp             GTEEEEEEEECC-----CEEEEEETTTCC----------------------EEEEEEEECCSHHHHHHHHHHHHHHTTCC
T ss_pred             cceeeecceEEecCcCEEEEEEEEcCCCc----------------------EEEEEEEcccccccHHHHHHHHHHHHhCC
Confidence            34554  6789999999999999876654                      67888777666566778999999999999


Q ss_pred             CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCee
Q 024842          104 HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYA  183 (262)
Q Consensus       104 h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~iv  183 (262)
                      ||||+++++++          ......+++|||+.+++|.+++..   ....+++..++.++.|++.||.|||+.+  |+
T Consensus       145 hpnIv~~~~~~----------~~~~~~~lv~E~~~~~~L~~~l~~---~~~~l~~~~~~~i~~qi~~aL~~LH~~~--iv  209 (373)
T 2x4f_A          145 HANLIQLYDAF----------ESKNDIVLVMEYVDGGELFDRIID---ESYNLTELDTILFMKQICEGIRHMHQMY--IL  209 (373)
T ss_dssp             CTTBCCEEEEE----------ECSSEEEEEEECCTTCEEHHHHHH---TGGGCCHHHHHHHHHHHHHHHHHHHHTT--EE
T ss_pred             CCCCCeEEEEE----------EECCEEEEEEeCCCCCcHHHHHHh---cCCCCCHHHHHHHHHHHHHHHHHHHHCC--cc
Confidence            99999999987          335679999999999999987753   3345899999999999999999999999  99


Q ss_pred             ecCCCCCcEEEecCCCCCCceEEeeccceeeccccC----ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecc
Q 024842          184 HNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELM  259 (262)
Q Consensus       184 H~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~  259 (262)
                      ||||||+|||+..+.+  ..+||+|||++.......    ..+++.|.+||.+..-.     .....|+|++|+++|+|+
T Consensus       210 H~Dlkp~NIll~~~~~--~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~-----~~~~~DiwslG~il~ell  282 (373)
T 2x4f_A          210 HLDLKPENILCVNRDA--KQIKIIDFGLARRYKPREKLKVNFGTPEFLAPEVVNYDF-----VSFPTDMWSVGVIAYMLL  282 (373)
T ss_dssp             CCCCCGGGEEEEETTT--TEEEECCCSSCEECCTTCBCCCCCSSCTTCCHHHHTTCB-----CCHHHHHHHHHHHHHHHH
T ss_pred             cccCCHHHEEEecCCC--CcEEEEeCCCceecCCccccccccCCCcEeChhhccCCC-----CCcHHhHHHHHHHHHHHH
Confidence            9999999999954321  169999999998765433    24777888887542211     112357888888888887


Q ss_pred             cCC
Q 024842          260 FGR  262 (262)
Q Consensus       260 ~G~  262 (262)
                      +|+
T Consensus       283 tg~  285 (373)
T 2x4f_A          283 SGL  285 (373)
T ss_dssp             HSS
T ss_pred             hCC
Confidence            774

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}

Probab=100.00  E-value=6e-34  Score=238.11  Aligned_cols=192  Identities=23%  Similarity=0.317  Sum_probs=139.0

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCCC
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSH  104 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~h  104 (262)
                      .++|++.+.||+|+||.||+|++..+++                      .||+|.+....  ..+.+.+|+.+++.++|
T Consensus        52 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~----------------------~vavK~~~~~~--~~~~~~~E~~~l~~l~h  107 (349)
T 2w4o_A           52 SDFFEVESELGRGATSIVYRCKQKGTQK----------------------PYALKVLKKTV--DKKIVRTEIGVLLRLSH  107 (349)
T ss_dssp             GGTEEEEEEEEECSSEEEEEEEETTTCC----------------------EEEEEEEEC------------CHHHHHCCC
T ss_pred             cCcEEEeeEEeeCCCEEEEEEEECCCCc----------------------EEEEEEeccch--hHHHHHHHHHHHHhCCC
Confidence            4679999999999999999999886654                      57777665432  33567889999999999


Q ss_pred             CCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeee
Q 024842          105 RNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAH  184 (262)
Q Consensus       105 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH  184 (262)
                      |||+++++++          ......+++|||+.+++|.+++.    ....+++..++.++.|++.||.|||+.+  |+|
T Consensus       108 ~niv~~~~~~----------~~~~~~~lv~e~~~~~~L~~~l~----~~~~~~~~~~~~i~~qi~~~L~~LH~~~--ivH  171 (349)
T 2w4o_A          108 PNIIKLKEIF----------ETPTEISLVLELVTGGELFDRIV----EKGYYSERDAADAVKQILEAVAYLHENG--IVH  171 (349)
T ss_dssp             TTBCCEEEEE----------ECSSEEEEEECCCCSCBHHHHHT----TCSSCCHHHHHHHHHHHHHHHHHHHHTT--CCC
T ss_pred             CCCcceeeeE----------ecCCeEEEEEEeCCCCCHHHHHH----hcCCCCHHHHHHHHHHHHHHHHHHHHCC--eEe
Confidence            9999999987          33567999999999999999875    4556999999999999999999999998  999


Q ss_pred             cCCCCCcEEEecCCCCCCceEEeeccceeeccccC----ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheeccc
Q 024842          185 NDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMF  260 (262)
Q Consensus       185 ~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~  260 (262)
                      |||||+||+++..+ ....+||+|||++.......    ..+++.|.+||.+....     .....|+|++|+++|+|++
T Consensus       172 ~Dikp~NIll~~~~-~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~-----~~~~~DiwslG~il~ell~  245 (349)
T 2w4o_A          172 RDLKPENLLYATPA-PDAPLKIADFGLSKIVEHQVLMKTVCGTPGYCAPEILRGCA-----YGPEVDMWSVGIITYILLC  245 (349)
T ss_dssp             CCCCGGGEEESSSS-TTCCEEECCCC----------------CGGGSCHHHHTTCC-----CCTHHHHHHHHHHHHHHHH
T ss_pred             cCCCcccEEEecCC-CCCCEEEccCccccccCcccccccccCCCCccCHHHhcCCC-----CCcccchHHHHHHHHHHHh
Confidence            99999999997522 12269999999998665332    34677777777553321     1123577777777777777


Q ss_pred             CC
Q 024842          261 GR  262 (262)
Q Consensus       261 G~  262 (262)
                      |+
T Consensus       246 g~  247 (349)
T 2w4o_A          246 GF  247 (349)
T ss_dssp             SS
T ss_pred             CC
Confidence            74

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A

Probab=100.00  E-value=1.1e-33  Score=229.66  Aligned_cols=195  Identities=21%  Similarity=0.269  Sum_probs=148.2

Q ss_pred             CCceeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHH
Q 024842           18 GGDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIR   97 (262)
Q Consensus        18 ~~~~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~   97 (262)
                      .+...+..++|++.+.||+|+||.||+|.+..                       +..+++|++...... .+.+.+|+.
T Consensus        16 ~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~-----------------------~~~vavK~~~~~~~~-~~~~~~E~~   71 (283)
T 3gen_A           16 YGSWEIDPKDLTFLKELGTGQFGVVKYGKWRG-----------------------QYDVAIKMIKEGSMS-EDEFIEEAK   71 (283)
T ss_dssp             CCTTBCCGGGEEEEEECC---CEEEEEEEETT-----------------------TEEEEEEEECTTSBC-HHHHHHHHH
T ss_pred             CCCccCCHHHHHhHhhcCCCCCceEEEEEEcC-----------------------CCeEEEEEecCCCCC-HHHHHHHHH
Confidence            34555778899999999999999999998763                       235788877654333 256889999


Q ss_pred             HhhhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHc
Q 024842           98 VSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHS  177 (262)
Q Consensus        98 ~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~  177 (262)
                      +++.++||||+++++++          ......+++||++.+++|.+++..   ....+++..++.++.|++.||.|||+
T Consensus        72 ~l~~l~h~~i~~~~~~~----------~~~~~~~lv~e~~~~~~L~~~l~~---~~~~~~~~~~~~i~~qi~~~l~~lH~  138 (283)
T 3gen_A           72 VMMNLSHEKLVQLYGVC----------TKQRPIFIITEYMANGCLLNYLRE---MRHRFQTQQLLEMCKDVCEAMEYLES  138 (283)
T ss_dssp             HHHTCCCTTBCCEEEEE----------CSSSSEEEEECCCTTCBHHHHHHC---GGGCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhcCCCCCEeeEEEEE----------ecCCCeEEEEeccCCCcHHHHHHH---hccCCCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999987          446678999999999999998863   23459999999999999999999999


Q ss_pred             CCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC------ccCcccCCcccchhhhhhhhhhhhhcCcccch
Q 024842          178 LEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF------ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVI  251 (262)
Q Consensus       178 ~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~------~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~  251 (262)
                      ++  ++||||||+||+++.++    .++|+|||++.......      ..++..|.+||.+....+     ....|+|++
T Consensus       139 ~~--i~H~dikp~Nili~~~~----~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~-----~~~~Dv~sl  207 (283)
T 3gen_A          139 KQ--FLHRDLAARNCLVNDQG----VVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLMYSKF-----SSKSDIWAF  207 (283)
T ss_dssp             TT--CCCSSCSGGGEEECTTS----CEEECSTTGGGGBCCHHHHSTTSTTSCGGGCCHHHHHHCCC-----SHHHHHHHH
T ss_pred             CC--ccCCCCccceEEEcCCC----CEEEccccccccccccccccccCCccCcccCCHHHhccCCC-----CchhhHHHH
Confidence            99  99999999999998776    69999999998654321      233445666664432211     113466666


Q ss_pred             heeheeccc
Q 024842          252 QILMRELMF  260 (262)
Q Consensus       252 g~~~~~l~~  260 (262)
                      |+++|+|++
T Consensus       208 G~~l~~l~t  216 (283)
T 3gen_A          208 GVLMWEIYS  216 (283)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHh
Confidence            666666665

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A

Probab=100.00  E-value=6.3e-34  Score=231.84  Aligned_cols=190  Identities=22%  Similarity=0.310  Sum_probs=144.8

Q ss_pred             CceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccch--HHHHHHHHHHHHhhhCC
Q 024842           26 NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNN--EQLEMVREEIRVSSLFS  103 (262)
Q Consensus        26 ~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~--~~~~~~~~E~~~l~~l~  103 (262)
                      ++|++.+.||+|+||.||+|++. +++                      .+|+|++.....  ...+.+.+|+.+++.++
T Consensus         2 ~~y~~~~~lg~G~~g~V~~~~~~-~~~----------------------~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~   58 (288)
T 1ob3_A            2 EKYHGLEKIGEGTYGVVYKAQNN-YGE----------------------TFALKKIRLEKEDEGIPSTTIREISILKELK   58 (288)
T ss_dssp             CSEEEEEEEEEETTEEEEEEEET-TSC----------------------EEEEEEECCSSGGGCCCHHHHHHHHGGGGCC
T ss_pred             ccchhhhhcccCCCEEEEEEEcC-CCC----------------------EEEEEEEeccccccccchhHHHHHHHHHhcC
Confidence            58999999999999999999973 333                      577776654322  22356778999999999


Q ss_pred             CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCee
Q 024842          104 HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYA  183 (262)
Q Consensus       104 h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~iv  183 (262)
                      ||||+++++++          ......+++||++.+ +|.+++..   ....+++..++.++.|++.||.|||+++  |+
T Consensus        59 h~~iv~~~~~~----------~~~~~~~lv~e~~~~-~l~~~~~~---~~~~~~~~~~~~~~~qi~~~l~~lH~~~--i~  122 (288)
T 1ob3_A           59 HSNIVKLYDVI----------HTKKRLVLVFEHLDQ-DLKKLLDV---CEGGLESVTAKSFLLQLLNGIAYCHDRR--VL  122 (288)
T ss_dssp             CTTBCCEEEEE----------ECSSCEEEEEECCSE-EHHHHHHT---STTCCCHHHHHHHHHHHHHHHHHHHHTT--CC
T ss_pred             CCCEeeeeeEE----------ccCCeEEEEEEecCC-CHHHHHHh---cccCCCHHHHHHHHHHHHHHHHHHHHCC--ee
Confidence            99999999987          335678999998875 88887752   3356999999999999999999999998  99


Q ss_pred             ecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-----ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheec
Q 024842          184 HNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMREL  258 (262)
Q Consensus       184 H~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l  258 (262)
                      ||||||+||+++.++    .+||+|||++.....+.     ..++..|.+||.+....    ......|+||+|+++|+|
T Consensus       123 H~dlkp~Nil~~~~~----~~kl~Dfg~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~----~~~~~~DiwslG~il~~l  194 (288)
T 1ob3_A          123 HRDLKPQNLLINREG----ELKIADFGLARAFGIPVRKYTHEIVTLWYRAPDVLMGSK----KYSTTIDIWSVGCIFAEM  194 (288)
T ss_dssp             CSCCCGGGEEECTTS----CEEECCTTHHHHHCC---------CCCTTCCHHHHTTCC----SCCTHHHHHHHHHHHHHH
T ss_pred             cCCCCHHHEEEcCCC----CEEEeECccccccCccccccccccccccccCchheeCCC----CCCcHHHHHHHHHHHHHH
Confidence            999999999998776    69999999997654321     24566677776543211    011235777777777777


Q ss_pred             ccCC
Q 024842          259 MFGR  262 (262)
Q Consensus       259 ~~G~  262 (262)
                      ++|+
T Consensus       195 ~~g~  198 (288)
T 1ob3_A          195 VNGT  198 (288)
T ss_dssp             HHSS
T ss_pred             HhCC
Confidence            7764

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.8e-33  Score=231.59  Aligned_cols=189  Identities=21%  Similarity=0.231  Sum_probs=146.0

Q ss_pred             CceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc--chHHHHHHHHHHHHhh-hC
Q 024842           26 NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ--NNEQLEMVREEIRVSS-LF  102 (262)
Q Consensus        26 ~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~--~~~~~~~~~~E~~~l~-~l  102 (262)
                      ++|++.++||+|+||.||+|++..+++                      .||+|++...  ..........|+..+. ..
T Consensus        57 ~~y~~~~~LG~G~~g~Vy~~~~~~~~~----------------------~vavK~~~~~~~~~~~~~~~~~e~~~~~~~~  114 (311)
T 3p1a_A           57 QSFQRLSRLGHGSYGEVFKVRSKEDGR----------------------LYAVKRSMSPFRGPKDRARKLAEVGSHEKVG  114 (311)
T ss_dssp             HHEEEEEEEEEETTEEEEEEEETTTSC----------------------EEEEEEESSSCCSHHHHHHHHHHHHHHHHHC
T ss_pred             hheeeeheeccCCCeEEEEEEECCCCe----------------------EEEEEEecccccChHHHHHHHHHHHHHHHhc
Confidence            689999999999999999999986655                      6777765432  2233334445555544 44


Q ss_pred             CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCe
Q 024842          103 SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPY  182 (262)
Q Consensus       103 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~i  182 (262)
                      +||||+++++++          ......+++||++ +++|.+++..   ....+++..++.++.|++.||.|||+.+  |
T Consensus       115 ~h~~iv~l~~~~----------~~~~~~~lv~e~~-~~~L~~~~~~---~~~~l~~~~~~~i~~qi~~aL~~LH~~~--i  178 (311)
T 3p1a_A          115 QHPCCVRLEQAW----------EEGGILYLQTELC-GPSLQQHCEA---WGASLPEAQVWGYLRDTLLALAHLHSQG--L  178 (311)
T ss_dssp             CCTTBCCEEEEE----------EETTEEEEEEECC-CCBHHHHHHH---HCSCCCHHHHHHHHHHHHHHHHHHHHTT--E
T ss_pred             CCCcEEEEEEEE----------EeCCEEEEEEecc-CCCHHHHHHh---cCCCCCHHHHHHHHHHHHHHHHHHHHCC--E
Confidence            899999999987          3467799999988 6788887753   3456999999999999999999999998  9


Q ss_pred             eecCCCCCcEEEecCCCCCCceEEeeccceeeccccC----ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheec
Q 024842          183 AHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMREL  258 (262)
Q Consensus       183 vH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l  258 (262)
                      +||||||+|||++.++    .+||+|||++.......    ..+++.|.+||.+..      ......||||+|++++||
T Consensus       179 vH~Dikp~NIll~~~~----~~kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~------~~~~~~DiwslG~il~el  248 (311)
T 3p1a_A          179 VHLDVKPANIFLGPRG----RCKLGDFGLLVELGTAGAGEVQEGDPRYMAPELLQG------SYGTAADVFSLGLTILEV  248 (311)
T ss_dssp             ECCCCSGGGEEECGGG----CEEECCCTTCEECC------CCCCCGGGCCGGGGGT------CCSTHHHHHHHHHHHHHH
T ss_pred             ecCCCCHHHEEECCCC----CEEEccceeeeecccCCCCcccCCCccccCHhHhcC------CCCchhhHHHHHHHHHHH
Confidence            9999999999998777    69999999998765432    347788888885532      122346888888888888


Q ss_pred             ccCC
Q 024842          259 MFGR  262 (262)
Q Consensus       259 ~~G~  262 (262)
                      ++|+
T Consensus       249 ~~g~  252 (311)
T 3p1a_A          249 ACNM  252 (311)
T ss_dssp             HHTC
T ss_pred             HhCC
Confidence            8773

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*

Probab=100.00  E-value=1.6e-33  Score=227.03  Aligned_cols=201  Identities=15%  Similarity=0.152  Sum_probs=160.0

Q ss_pred             eecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc--chHHHHHHHHHHHHh
Q 024842           22 WINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ--NNEQLEMVREEIRVS   99 (262)
Q Consensus        22 ~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~--~~~~~~~~~~E~~~l   99 (262)
                      .+..++|++.+.||+|+||.||+|++.  +                      ..+|+|.+...  .....+.+.+|+.++
T Consensus         6 ~i~~~~y~~~~~lg~G~~g~V~~~~~~--~----------------------~~~avK~~~~~~~~~~~~~~~~~E~~~l   61 (271)
T 3kmu_A            6 GIDFKQLNFLTKLNENHSGELWKGRWQ--G----------------------NDIVVKVLKVRDWSTRKSRDFNEECPRL   61 (271)
T ss_dssp             CCCGGGCEEEEEEEEETTEEEEEEEET--T----------------------EEEEEEEECCTTCCHHHHHHHHHHGGGG
T ss_pred             CCCHHHhHHHHHhcCCCcceEEEEEEC--C----------------------eeEEEEEecccccCHHHHHHHHHHHHHH
Confidence            345679999999999999999999975  2                      25777776544  344457789999999


Q ss_pred             hhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCC
Q 024842          100 SLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLE  179 (262)
Q Consensus       100 ~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~  179 (262)
                      +.++||||+++++++..        ......+++||++.+++|.+++..  .....+++..++.++.|++.||.|||+.+
T Consensus        62 ~~l~h~~iv~~~~~~~~--------~~~~~~~lv~e~~~~~~L~~~l~~--~~~~~~~~~~~~~i~~qi~~~l~~lH~~~  131 (271)
T 3kmu_A           62 RIFSHPNVLPVLGACQS--------PPAPHPTLITHWMPYGSLYNVLHE--GTNFVVDQSQAVKFALDMARGMAFLHTLE  131 (271)
T ss_dssp             CCCSCTTEECEEEEECT--------TTSSSCEEEEECCTTCBHHHHHHS--CSSCCCCHHHHHHHHHHHHHHHHHHTTSS
T ss_pred             HhcCCCchhheEEEEcc--------CCCCCeEeeecccCCCcHHHHHhh--cccCCCCHHHHHHHHHHHHHHHHHHhcCC
Confidence            99999999999998732        223678999999999999999862  12235899999999999999999999977


Q ss_pred             CCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccCccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecc
Q 024842          180 PPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKFALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELM  259 (262)
Q Consensus       180 ~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~  259 (262)
                      ++++||||||+||+++.++    .++|.||+++.........+++.|.+||.+........  ....|+||+|+++|+|+
T Consensus       132 ~~i~H~dikp~Nil~~~~~----~~~l~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~--~~~~Di~slG~il~el~  205 (271)
T 3kmu_A          132 PLIPRHALNSRSVMIDEDM----TARISMADVKFSFQSPGRMYAPAWVAPEALQKKPEDTN--RRSADMWSFAVLLWELV  205 (271)
T ss_dssp             SCCTTCCCSGGGEEECTTS----CEEEEGGGSCCTTSCTTCBSCGGGSCHHHHHSCGGGSC--HHHHHHHHHHHHHHHHH
T ss_pred             CceecCCCccceEEEcCCc----ceeEEeccceeeecccCccCCccccChhhhccCCCCCC--CchhhHHHHHHHHHHHH
Confidence            7799999999999998776    58999888887666666677888888886643322211  11368889999888888


Q ss_pred             cCC
Q 024842          260 FGR  262 (262)
Q Consensus       260 ~G~  262 (262)
                      +|+
T Consensus       206 ~g~  208 (271)
T 3kmu_A          206 TRE  208 (271)
T ss_dssp             HCS
T ss_pred             hCC
Confidence            874

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7

Probab=100.00  E-value=1.3e-33  Score=235.40  Aligned_cols=201  Identities=19%  Similarity=0.227  Sum_probs=154.1

Q ss_pred             eecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc-chHHHHHHHHHHHHhh
Q 024842           22 WINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ-NNEQLEMVREEIRVSS  100 (262)
Q Consensus        22 ~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~-~~~~~~~~~~E~~~l~  100 (262)
                      .+..++|++.+.||+|+||.||+|++.....                 ...+..||+|.+... .....+.+.+|+.+++
T Consensus        43 ~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~-----------------~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~  105 (343)
T 1luf_A           43 EYPRNNIEYVRDIGEGAFGRVFQARAPGLLP-----------------YEPFTMVAVKMLKEEASADMQADFQREAALMA  105 (343)
T ss_dssp             BCCGGGCEEEEEEEECSSCEEEEEEEETSST-----------------TSSEEEEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred             EecHHHCeeeeeeeecCCeeEEEEEecCcCC-----------------CCCceeEEEEEeccccCHHHHHHHHHHHHHHH
Confidence            3456899999999999999999999874321                 012357888887654 3444577899999999


Q ss_pred             hCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhc--------------------CCCCCHHH
Q 024842          101 LFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTK--------------------KEFFSTSD  160 (262)
Q Consensus       101 ~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~--------------------~~~~~~~~  160 (262)
                      .++||||+++++++          ......+++|||+.+++|.+++......                    ...+++..
T Consensus       106 ~l~hp~iv~~~~~~----------~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  175 (343)
T 1luf_A          106 EFDNPNIVKLLGVC----------AVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAE  175 (343)
T ss_dssp             TCCCTTBCCEEEEE----------CSSSSCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHH
T ss_pred             hCCCCCEEEEEEEE----------ccCCceEEEEecCCCCcHHHHHHHhCcccccccccccccccccccccCCCCCCHHH
Confidence            99999999999987          3466789999999999999998753211                    25699999


Q ss_pred             HHHHHHHHHHHHHHHHcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-------ccCcccCCcccchh
Q 024842          161 VLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-------ALGQRRYSCRNGLL  233 (262)
Q Consensus       161 ~~~i~~ql~~~l~~lH~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-------~~~~~~~~~~~d~~  233 (262)
                      ++.++.|++.||.|||+++  |+||||||+||+++.++    .+||+|||++.......       ..++..|.+||.+.
T Consensus       176 ~~~i~~qi~~~l~~LH~~~--ivH~Dlkp~NIl~~~~~----~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~  249 (343)
T 1luf_A          176 QLCIARQVAAGMAYLSERK--FVHRDLATRNCLVGENM----VVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIF  249 (343)
T ss_dssp             HHHHHHHHHHHHHHHHHTT--CCCSCCSGGGEEECGGG----CEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCC--eecCCCCcceEEECCCC----eEEEeecCCCcccccCccccccCCCcccceecChhhhc
Confidence            9999999999999999999  99999999999998776    69999999997654321       23455677776443


Q ss_pred             hhhhhhhhhhhcCcccchheeheeccc
Q 024842          234 SIVLHLSELLSCGTVRVIQILMRELMF  260 (262)
Q Consensus       234 s~g~~~~e~~~~~~v~~~g~~~~~l~~  260 (262)
                      .-.     .....|+|++|+++|+|++
T Consensus       250 ~~~-----~~~~~Di~slG~il~el~t  271 (343)
T 1luf_A          250 YNR-----YTTESDVWAYGVVLWEIFS  271 (343)
T ss_dssp             HCC-----CCHHHHHHHHHHHHHHHHT
T ss_pred             cCC-----cCcccccHHHHHHHHHHHh
Confidence            221     1123566677776666665

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...

Probab=100.00  E-value=2.4e-33  Score=236.38  Aligned_cols=217  Identities=22%  Similarity=0.342  Sum_probs=155.3

Q ss_pred             CCCcccchhhhhccCCCCCceeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehh
Q 024842            1 MGCSLSGLNALYDSVNGGGDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKK   80 (262)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~   80 (262)
                      ||++....+.++...-+. ......++|++.+.||+|+||.||+|.+..+++                      .||+|+
T Consensus         1 ~g~~~~~~~~~~~~~~~~-~~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~----------------------~vavK~   57 (371)
T 2xrw_A            1 MGSRSKRDNNFYSVEIGD-STFTVLKRYQNLKPIGSGAQGIVCAAYDAILER----------------------NVAIKK   57 (371)
T ss_dssp             -CCSGGGGGGEEEEEETT-EEEEEETTEEEEEEEEECSSEEEEEEEETTTTE----------------------EEEEEE
T ss_pred             CCccccccCcceEeecCC-cccchhhheeEeeeeEecCCEEEEEEEECCCCc----------------------eEEEEE
Confidence            677766666655544333 333345789999999999999999999877655                      577777


Q ss_pred             hhcc--chHHHHHHHHHHHHhhhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCH
Q 024842           81 VLIQ--NNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFST  158 (262)
Q Consensus        81 ~~~~--~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~  158 (262)
                      +...  .....+.+.+|+.+++.++||||+++++++...    .........+++||++. ++|.+.+.      ..+++
T Consensus        58 ~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~----~~~~~~~~~~lv~e~~~-~~l~~~~~------~~~~~  126 (371)
T 2xrw_A           58 LSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQ----KSLEEFQDVYIVMELMD-ANLCQVIQ------MELDH  126 (371)
T ss_dssp             EECTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSC----CSTTTCCEEEEEEECCS-EEHHHHHH------SCCCH
T ss_pred             eccccCChHHHHHHHHHHHHHHhcCCCCccceEEeeccc----cccccccceEEEEEcCC-CCHHHHHh------hccCH
Confidence            6542  344557788999999999999999999987310    00012346899999887 47777663      23899


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC----ccCcccCCcccchhh
Q 024842          159 SDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF----ALGQRRYSCRNGLLS  234 (262)
Q Consensus       159 ~~~~~i~~ql~~~l~~lH~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~~~~~~~~d~~s  234 (262)
                      ..++.++.|++.||.|||+++  |+||||||+|||++.++    .+||+|||++.......    ..++..|.+||.+..
T Consensus       127 ~~~~~i~~qi~~al~~lH~~~--ivH~Dlkp~NIl~~~~~----~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~  200 (371)
T 2xrw_A          127 ERMSYLLYQMLCGIKHLHSAG--IIHRDLKPSNIVVKSDC----TLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILG  200 (371)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTT--CCCSCCCGGGEEECTTS----CEEECCCCC----------------CTTCCHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHCC--eecccCCHHHEEEcCCC----CEEEEEeecccccccccccCCceecCCccCHHHhcC
Confidence            999999999999999999999  99999999999998776    69999999998765432    356677877776543


Q ss_pred             hhhhhhhhhhcCcccchheeheecccCC
Q 024842          235 IVLHLSELLSCGTVRVIQILMRELMFGR  262 (262)
Q Consensus       235 ~g~~~~e~~~~~~v~~~g~~~~~l~~G~  262 (262)
                      ..     .....|+||+|+++++|++|+
T Consensus       201 ~~-----~~~~~DiwslG~il~el~~g~  223 (371)
T 2xrw_A          201 MG-----YKENVDIWSVGCIMGEMIKGG  223 (371)
T ss_dssp             CC-----CCTTHHHHHHHHHHHHHHHSS
T ss_pred             CC-----CCchHhHHHHHHHHHHHHhCC
Confidence            22     122467888888888877774

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.8e-34  Score=239.97  Aligned_cols=192  Identities=21%  Similarity=0.276  Sum_probs=151.4

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc--------hHHHHHHHHHH
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN--------NEQLEMVREEI   96 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~--------~~~~~~~~~E~   96 (262)
                      .++|++.+.||+|+||.||+|++..+++                      .||+|.+....        ....+.+.+|+
T Consensus        23 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~----------------------~vavK~~~~~~~~~~~~~~~~~~~~~~~E~   80 (335)
T 3dls_A           23 SQKYSTMSPLGSGAFGFVWTAVDKEKNK----------------------EVVVKFIKKEKVLEDCWIEDPKLGKVTLEI   80 (335)
T ss_dssp             HHHEEEEEECSSSSSCSEEEEEETTTTE----------------------EEEEEEEESTTSCTTSEEEETTTEEEEHHH
T ss_pred             ccceEEEeEEEecCCEEEEEEEECCCCc----------------------EEEEEEEehhhcccccccchHHHHHHHHHH
Confidence            3689999999999999999999887766                      45555543321        11223566799


Q ss_pred             HHhhhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCC-chhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHH
Q 024842           97 RVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDG-TLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHM  175 (262)
Q Consensus        97 ~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~l  175 (262)
                      .+++.++||||+++++++          ......+++||++..+ +|.+++.    ....+++..++.++.|++.||.||
T Consensus        81 ~~l~~l~h~~Iv~~~~~~----------~~~~~~~lv~e~~~~g~~l~~~~~----~~~~l~~~~~~~i~~qi~~~L~~L  146 (335)
T 3dls_A           81 AILSRVEHANIIKVLDIF----------ENQGFFQLVMEKHGSGLDLFAFID----RHPRLDEPLASYIFRQLVSAVGYL  146 (335)
T ss_dssp             HHHTTCCCTTBCCEEEEE----------ECSSEEEEEEECCTTSCBHHHHHH----TCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCCCEeeEEEEE----------eeCCEEEEEEEeCCCCccHHHHHH----hcCCCCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999987          3467789999988766 9988886    555699999999999999999999


Q ss_pred             HcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC----ccCcccCCcccchhhhhhhhhhhhhcCcccch
Q 024842          176 HSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVI  251 (262)
Q Consensus       176 H~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~  251 (262)
                      |+.+  |+||||||+|||++.++    .+||+|||++.......    ..+++.|.+||.+..-...    ....|+||+
T Consensus       147 H~~~--ivH~Dlkp~NIll~~~~----~~kL~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~----~~~~Diwsl  216 (335)
T 3dls_A          147 RLKD--IIHRDIKDENIVIAEDF----TIKLIDFGSAAYLERGKLFYTFCGTIEYCAPEVLMGNPYR----GPELEMWSL  216 (335)
T ss_dssp             HHTT--EECSCCSGGGEEECTTS----CEEECCCTTCEECCTTCCBCEECSCGGGCCHHHHTTCCBC----SHHHHHHHH
T ss_pred             HhCC--eEEeccCHHHEEEcCCC----cEEEeecccceECCCCCceeccCCCccccChhhhcCCCCC----CCcccchhH
Confidence            9999  99999999999998776    69999999998765443    2467788888765432211    112578888


Q ss_pred             heeheecccCC
Q 024842          252 QILMRELMFGR  262 (262)
Q Consensus       252 g~~~~~l~~G~  262 (262)
                      |+++|+|++|+
T Consensus       217 G~il~el~~g~  227 (335)
T 3dls_A          217 GVTLYTLVFEE  227 (335)
T ss_dssp             HHHHHHHHHSS
T ss_pred             HHHHHHHHhCC
Confidence            88888888774

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*

Probab=100.00  E-value=9.1e-34  Score=229.69  Aligned_cols=207  Identities=21%  Similarity=0.320  Sum_probs=141.4

Q ss_pred             CCCcccchhhhhccCCCCCceeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehh
Q 024842            1 MGCSLSGLNALYDSVNGGGDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKK   80 (262)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~   80 (262)
                      ||.+.|..+.++..     ...+..++|++.+.||+|+||.||++++.  +                      ..+++|.
T Consensus         1 mg~s~~~~~~~~~~-----~~~~~~~~y~~~~~lg~G~~g~V~~~~~~--~----------------------~~vavK~   51 (278)
T 1byg_A            1 MGGSVAAQDEFYRS-----GWALNMKELKLLQTIGKGEFGDVMLGDYR--G----------------------NKVAVKC   51 (278)
T ss_dssp             -------------------CCBCCGGGEEEEEEEEECSSCEEEEEEET--T----------------------EEEEEEE
T ss_pred             CCCCccchhhhhhc-----cccCChhhceEEeEEecCCCceEEEEEEc--C----------------------CEEEEEE
Confidence            77777754443333     33456789999999999999999999874  2                      2678887


Q ss_pred             hhccchHHHHHHHHHHHHhhhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHH
Q 024842           81 VLIQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSD  160 (262)
Q Consensus        81 ~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~  160 (262)
                      +....  ..+.+.+|+.+++.++||||+++++++.         ...+..+++||++.+++|.+++....  ...+++..
T Consensus        52 ~~~~~--~~~~~~~E~~~l~~l~h~~iv~~~~~~~---------~~~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~  118 (278)
T 1byg_A           52 IKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIV---------EEKGGLYIVTEYMAKGSLVDYLRSRG--RSVLGGDC  118 (278)
T ss_dssp             CCCCC----HHHHHTHHHHTTCCCTTBCCEEEEEC---------CC--CCEEEECCCTTEEHHHHHHHHH--HHHCCHHH
T ss_pred             ecchh--HHHHHHHHHHHHHhCCCCCEeeEEEEEE---------cCCCceEEEEecCCCCCHHHHHHhcc--cccCCHHH
Confidence            65443  3467889999999999999999999763         23456899999999999999886432  22388999


Q ss_pred             HHHHHHHHHHHHHHHHcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC--ccCcccCCcccchhhhhhh
Q 024842          161 VLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF--ALGQRRYSCRNGLLSIVLH  238 (262)
Q Consensus       161 ~~~i~~ql~~~l~~lH~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~--~~~~~~~~~~~d~~s~g~~  238 (262)
                      ++.++.|++.||.|||+.+  ++|+||||+||+++.++    .++|+|||++.......  ..++..|.+||.+....  
T Consensus       119 ~~~~~~~i~~~l~~lH~~~--i~H~dlkp~Nil~~~~~----~~~l~Dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~--  190 (278)
T 1byg_A          119 LLKFSLDVCEAMEYLEGNN--FVHRDLAARNVLVSEDN----VAKVSDFGLTKEASSTQDTGKLPVKWTAPEALREKK--  190 (278)
T ss_dssp             HHHHHHHHHHHHHHHHHTT--CCCSCCSGGGEEECTTS----CEEECCCCC------------CCTTTSCHHHHHHCC--
T ss_pred             HHHHHHHHHHHHHHHHhCC--ccccCCCcceEEEeCCC----cEEEeeccccccccccccCCCccccccCHHHhCCCC--
Confidence            9999999999999999998  99999999999998766    69999999998654432  23455677776442211  


Q ss_pred             hhhhhhcCcccchheeheeccc
Q 024842          239 LSELLSCGTVRVIQILMRELMF  260 (262)
Q Consensus       239 ~~e~~~~~~v~~~g~~~~~l~~  260 (262)
                         .....|+|++|+++++|++
T Consensus       191 ---~~~~~Di~slG~il~~l~t  209 (278)
T 1byg_A          191 ---FSTKSDVWSFGILLWEIYS  209 (278)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHT
T ss_pred             ---CCchhcHHHHHHHHHHHHh
Confidence               1123466666666666665

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=100.00  E-value=3.9e-34  Score=236.96  Aligned_cols=198  Identities=22%  Similarity=0.243  Sum_probs=154.5

Q ss_pred             eeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchH-HHHHHHHHHHHh
Q 024842           21 VWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNE-QLEMVREEIRVS   99 (262)
Q Consensus        21 ~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~-~~~~~~~E~~~l   99 (262)
                      ..+..++|++.+.||+|+||.||+|++..                       +..||+|++...... ....+.+|+.++
T Consensus        25 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~~-----------------------~~~vavK~~~~~~~~~~~~~~~~e~~~l   81 (326)
T 3uim_A           25 LQVASDNFSNKNILGRGGFGKVYKGRLAD-----------------------GTLVAVKRLKEERTQGGELQFQTEVEMI   81 (326)
T ss_dssp             HHTTTTSSCSTTEEECCSSSEEEEECCSS-----------------------SCCEEEEECCC-----CCCHHHHHHHGG
T ss_pred             HHHHhhccccceeEecCCCcEEEEEEecC-----------------------CCEEEEEEeccccCchHHHHHHHHHHHH
Confidence            33457899999999999999999997542                       236788876544322 123578999999


Q ss_pred             hhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcC-
Q 024842          100 SLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSL-  178 (262)
Q Consensus       100 ~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~-  178 (262)
                      +.++||||+++++++          ......+++||++.+++|.+++.........+++..++.++.|++.||.|||+. 
T Consensus        82 ~~l~h~~iv~~~~~~----------~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~  151 (326)
T 3uim_A           82 SMAVHRNLLRLRGFC----------MTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHDHC  151 (326)
T ss_dssp             GTCCCTTBCCCCEEE----------CCSSCCEEEEECCTTCBHHHHHHCCSTTCCCCCHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             HhccCCCccceEEEE----------ecCCceEEEEEeccCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence            999999999999987          345678999999999999999875544455699999999999999999999998 


Q ss_pred             --CCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC------ccCcccCCcccchhhhhhhhhhhhhcCcccc
Q 024842          179 --EPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF------ALGQRRYSCRNGLLSIVLHLSELLSCGTVRV  250 (262)
Q Consensus       179 --~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~------~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~  250 (262)
                        +  ++||||||+|||++.++    .+||+|||++.......      ..+++.|.+||.+....     .....||||
T Consensus       152 ~~~--ivH~Dlkp~Nil~~~~~----~~kl~Dfg~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-----~~~~~Di~s  220 (326)
T 3uim_A          152 DPK--IIHRDVKAANILLDEEF----EAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGK-----SSEKTDVFG  220 (326)
T ss_dssp             SSC--EECCCCSGGGEEECTTC----CEEECCCSSCEECCSSSSCEECCCCSCGGGCCHHHHHHSE-----ECHHHHHHH
T ss_pred             CCC--eEeCCCchhhEEECCCC----CEEeccCccccccCcccccccccccCCcCccCHHHhccCC-----CCccccchh
Confidence              8  99999999999998776    69999999998764322      23677888887543221     122357888


Q ss_pred             hheeheecccCC
Q 024842          251 IQILMRELMFGR  262 (262)
Q Consensus       251 ~g~~~~~l~~G~  262 (262)
                      +|+++|+|++|+
T Consensus       221 lG~il~~l~~g~  232 (326)
T 3uim_A          221 YGVMLLELITGQ  232 (326)
T ss_dssp             HHHHHHHHHHCC
T ss_pred             HHHHHHHHHhCC
Confidence            888888877774

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*

Probab=100.00  E-value=2.5e-33  Score=229.64  Aligned_cols=201  Identities=18%  Similarity=0.260  Sum_probs=151.6

Q ss_pred             eecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc-hHHHHHHHHHHHHhh
Q 024842           22 WINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN-NEQLEMVREEIRVSS  100 (262)
Q Consensus        22 ~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~-~~~~~~~~~E~~~l~  100 (262)
                      .+..++|++.+.||+|+||.||+|++.....                  ..+..||+|++.... ....+.+.+|+.+++
T Consensus        17 ~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~------------------~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~   78 (302)
T 4e5w_A           17 HFEKRFLKRIRDLGEGHFGKVELCRYDPEGD------------------NTGEQVAVKSLKPESGGNHIADLKKEIEILR   78 (302)
T ss_dssp             BCCGGGEEEEEEEEECSSEEEEEEEECTTSS------------------SCSEEEEEEEEC-----CCHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhccCCCCceEEEEEEEccccC------------------ccCeEEEEEEecccccchhHHHHHHHHHHHH
Confidence            3456789999999999999999998532211                  134478888776442 223467889999999


Q ss_pred             hCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCC
Q 024842          101 LFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEP  180 (262)
Q Consensus       101 ~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~  180 (262)
                      .++||||+++++++..        ......+++||++.+++|.+++..   ....+++..++.++.|++.||.|||+.+ 
T Consensus        79 ~l~h~~i~~~~~~~~~--------~~~~~~~lv~e~~~~~~L~~~l~~---~~~~~~~~~~~~~~~~i~~~l~~lH~~~-  146 (302)
T 4e5w_A           79 NLYHENIVKYKGICTE--------DGGNGIKLIMEFLPSGSLKEYLPK---NKNKINLKQQLKYAVQICKGMDYLGSRQ-  146 (302)
T ss_dssp             TCCCTTBCCEEEEEEC-----------CCEEEEEECCTTCBHHHHHHH---HTTTCCHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred             hCCCCCeeeeeeEEec--------CCCceEEEEEEeCCCCcHHHHHHh---ccccCCHHHHHHHHHHHHHHHHHhhcCC-
Confidence            9999999999998741        223568999999999999998853   3455999999999999999999999999 


Q ss_pred             CeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC--------ccCcccCCcccchhhhhhhhhhhhhcCcccchh
Q 024842          181 PYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF--------ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQ  252 (262)
Q Consensus       181 ~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~--------~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g  252 (262)
                       ++|+||||+||+++.++    .++|+|||++.......        ..++..|.+||.+....+     ....|+|++|
T Consensus       147 -i~H~dikp~Nil~~~~~----~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~-----~~~~Di~slG  216 (302)
T 4e5w_A          147 -YVHRDLAARNVLVESEH----QVKIGDFGLTKAIETDKEYYTVKDDRDSPVFWYAPECLMQSKF-----YIASDVWSFG  216 (302)
T ss_dssp             -EECSCCSGGGEEEEETT----EEEECCCTTCEECCTTCCEEECCCCTTCCGGGCCHHHHHHCEE-----EHHHHHHHHH
T ss_pred             -cccCCCchheEEEcCCC----CEEECcccccccccCCCcceeccCCCCCCccccCCeeecCCCC-----CcchhHHHHH
Confidence             99999999999998877    79999999998765432        234555777775432211     1235777777


Q ss_pred             eeheecccCC
Q 024842          253 ILMRELMFGR  262 (262)
Q Consensus       253 ~~~~~l~~G~  262 (262)
                      +++++|++|+
T Consensus       217 ~il~~l~~g~  226 (302)
T 4e5w_A          217 VTLHELLTYC  226 (302)
T ss_dssp             HHHHHHHTTT
T ss_pred             HHHHHHHHcc
Confidence            7777777763

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A

Probab=100.00  E-value=2.7e-33  Score=235.51  Aligned_cols=201  Identities=17%  Similarity=0.249  Sum_probs=148.5

Q ss_pred             cCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHH-----------HHH
Q 024842           24 NENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQL-----------EMV   92 (262)
Q Consensus        24 ~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~-----------~~~   92 (262)
                      ..++|++.+.||+|+||.||+|.+..++..                 ..+..||+|..........           ...
T Consensus        33 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~-----------------~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~   95 (364)
T 3op5_A           33 AAAAWKVGLPIGQGGFGCIYLADMNSSESV-----------------GSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQ   95 (364)
T ss_dssp             TCCEEEEEEECCCC-CCEEEEEEECCSSCC-----------------CTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHH
T ss_pred             CCCeEEEEEEEecCCCeEEEEeeecCcccc-----------------ccccceEEEEeeccchhHHHHHHHHHhhhhhHH
Confidence            467999999999999999999998765431                 1234677877654432111           123


Q ss_pred             HHHHHHhhhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHH
Q 024842           93 REEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGL  172 (262)
Q Consensus        93 ~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l  172 (262)
                      ..|+..++.++||||+++++++..      ........+++|||+ +++|.+++..   ....+++..++.++.|++.||
T Consensus        96 ~~e~~~~~~l~h~~iv~~~~~~~~------~~~~~~~~~lv~e~~-g~~L~~~~~~---~~~~l~~~~~~~i~~qi~~~l  165 (364)
T 3op5_A           96 IQKWIRTRKLKYLGVPKYWGSGLH------DKNGKSYRFMIMDRF-GSDLQKIYEA---NAKRFSRKTVLQLSLRILDIL  165 (364)
T ss_dssp             HHHHHHHTTCSCCCSCCEEEEEEE------EETTEEEEEEEEECE-EEEHHHHHHH---TTSCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhccCCCCCeEEeeeee------ccCCcceEEEEEeCC-CCCHHHHHHh---ccCCCCHHHHHHHHHHHHHHH
Confidence            345666788899999999998742      112235689999999 9999998863   335699999999999999999


Q ss_pred             HHHHcCCCCeeecCCCCCcEEEe--cCCCCCCceEEeeccceeeccccC------------ccCcccCCcccchhhhhhh
Q 024842          173 KHMHSLEPPYAHNDVKPGNILIT--CRKGQPPLAILMDFGSARPAQSKF------------ALGQRRYSCRNGLLSIVLH  238 (262)
Q Consensus       173 ~~lH~~~~~ivH~dikp~Nill~--~~~~~~~~~kl~Dfg~a~~~~~~~------------~~~~~~~~~~~d~~s~g~~  238 (262)
                      .|||+.+  |+||||||+|||++  .++    .+||+|||++..+....            ..++..|.+||.+....  
T Consensus       166 ~~lH~~~--iiHrDlkp~Nill~~~~~~----~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~--  237 (364)
T 3op5_A          166 EYIHEHE--YVHGDIKASNLLLNYKNPD----QVYLVDYGLAYRYCPEGVHKAYAADPKRCHDGTIEFTSIDAHNGVA--  237 (364)
T ss_dssp             HHHHHTT--EECCCCCGGGEEEESSCTT----CEEECCCTTCEESSGGGCCCCSSCCSSCCCCCCTTTCCHHHHTTCC--
T ss_pred             HHHHHCC--eEEecCCHHHEEEecCCCC----eEEEEECCcceecccCCcccccccCcccccCCCCCccCHHHhCCCC--
Confidence            9999998  99999999999998  444    69999999998764332            12777888887553322  


Q ss_pred             hhhhhhcCcccchheeheecccCC
Q 024842          239 LSELLSCGTVRVIQILMRELMFGR  262 (262)
Q Consensus       239 ~~e~~~~~~v~~~g~~~~~l~~G~  262 (262)
                         .....||||+|+++|+|++|+
T Consensus       238 ---~~~~~Di~slG~~l~el~~g~  258 (364)
T 3op5_A          238 ---PSRRGDLEILGYCMIQWLTGH  258 (364)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHHSC
T ss_pred             ---CCchhhHHHHHHHHHHHHhCC
Confidence               122357888888888888774

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A

Probab=100.00  E-value=4.3e-34  Score=241.42  Aligned_cols=208  Identities=11%  Similarity=0.115  Sum_probs=148.6

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhc---cchHHHHHHHHHHH---H
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLI---QNNEQLEMVREEIR---V   98 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~---~~~~~~~~~~~E~~---~   98 (262)
                      .++|++.+.||+|+||.||+|++..+++                      .||+|++..   ......+.+.+|+.   .
T Consensus        72 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~----------------------~vavK~~~~~~~~~~~~~~~~~~E~~~l~~  129 (377)
T 3byv_A           72 PRTLVRGTVLGQEDPYAYLEATDQETGE----------------------SFEVHVPYFTERPPSNAIKQMKEEVLRLRL  129 (377)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEC-CCCC----------------------EEEEEEEEECC-CCTTHHHHHHHHHHGGGG
T ss_pred             CceEEEcceeecCCCEEEEEEEECCCCc----------------------EEEEEEEeeccccchHHHHHHHHHHHHHHh
Confidence            5789999999999999999999876554                      678887653   23445678889994   5


Q ss_pred             hhhCCCCCccchhhhhHHHhhhccCCC---------Cc-----ceeEEEEeecCCCchhhHHHHhhhc---CCCCCHHHH
Q 024842           99 SSLFSHRNLLPLLDHAIIAVKANQEGS---------WK-----HEAYLLFPVHLDGTLLDHAKVMQTK---KEFFSTSDV  161 (262)
Q Consensus        99 l~~l~h~~i~~~~~~~~~~~~~~~~~~---------~~-----~~~~~v~~~~~~~~L~~~~~~~~~~---~~~~~~~~~  161 (262)
                      ++.++||||+++++.+..........+         ..     ...|++||++ +|+|.+++......   ...+++..+
T Consensus       130 l~~l~hpniv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lv~E~~-~g~L~~~l~~~~~~~~~~~~l~~~~~  208 (377)
T 3byv_A          130 LRGIKNQKQAKVHLRFIFPFDLVKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHAR  208 (377)
T ss_dssp             STTCCSHHHHHHHHCBCCCSEEEECTTSCSEEEC------CEEESEEEEEECC-SEEHHHHHHHHHHTTTTTHHHHHHHH
T ss_pred             ccccCCHHHHHHHhhhhhhhhhhhccCCccccccccCCCceEEEEEEEEEecc-CCCHHHHHHhccccccccccccHHHH
Confidence            555689999999965532111000000         01     1378999998 68999998743221   112335888


Q ss_pred             HHHHHHHHHHHHHHHcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeecccc--CccCcccCCcccchhhhhh--
Q 024842          162 LQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSK--FALGQRRYSCRNGLLSIVL--  237 (262)
Q Consensus       162 ~~i~~ql~~~l~~lH~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~--~~~~~~~~~~~~d~~s~g~--  237 (262)
                      +.++.|++.||+|||+++  |+||||||+|||++.++    .+||+|||++......  ...+ ..|.+||.+...+.  
T Consensus       209 ~~i~~qi~~aL~~LH~~~--ivHrDikp~NIll~~~~----~~kL~DFG~a~~~~~~~~~~~g-~~y~aPE~~~~~~~~~  281 (377)
T 3byv_A          209 LQLTLQVIRLLASLHHYG--LVHTYLRPVDIVLDQRG----GVFLTGFEHLVRDGARVVSSVS-RGFEPPELEARRATIS  281 (377)
T ss_dssp             HHHHHHHHHHHHHHHHTT--EECSCCCGGGEEECTTC----CEEECCGGGCEETTCEEECCCC-TTCCCHHHHHHHTSTH
T ss_pred             HHHHHHHHHHHHHHHhCC--eecCCCCHHHEEEcCCC----CEEEEechhheecCCcccCCCC-cCccChhhhccccccc
Confidence            899999999999999999  99999999999998776    6999999999875432  2245 78888887654300  


Q ss_pred             ----hhhhhhhcCcccchheeheecccCC
Q 024842          238 ----HLSELLSCGTVRVIQILMRELMFGR  262 (262)
Q Consensus       238 ----~~~e~~~~~~v~~~g~~~~~l~~G~  262 (262)
                          .........||||+|+++|+|++|+
T Consensus       282 ~~~~~~~~~~~~~DvwSlG~il~elltg~  310 (377)
T 3byv_A          282 YHRDRRTLMTFSFDAWALGLVIYWIWCAD  310 (377)
T ss_dssp             HHHCCEEECCHHHHHHHHHHHHHHHHHSS
T ss_pred             ccccccccCChhhhHHHHHHHHHHHHHCC
Confidence                0001223468999999999998885

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=100.00  E-value=2.2e-33  Score=245.59  Aligned_cols=193  Identities=25%  Similarity=0.340  Sum_probs=152.0

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc-------------hHHHHH
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN-------------NEQLEM   91 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~-------------~~~~~~   91 (262)
                      .++|++.+.||+|+||.||+|++..+++                      .+|+|.+....             ....+.
T Consensus        35 ~~~Y~~~~~lG~G~~g~V~~~~~~~~~~----------------------~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~   92 (504)
T 3q5i_A           35 GESYFKVRKLGSGAYGEVLLCKEKNGHS----------------------EKAIKVIKKSQFDKGRYSDDNKNIEKFHEE   92 (504)
T ss_dssp             GGTEEEEEEEEC--CEEEEEEEETTTCC----------------------EEEEEEEEC----------------CTHHH
T ss_pred             ccceEEEeEecccCCeEEEEEEECCCCc----------------------EEEEEEEEhhhcccccccccchhhHHHHHH
Confidence            4689999999999999999999987766                      45555543321             122467


Q ss_pred             HHHHHHHhhhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHH
Q 024842           92 VREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAG  171 (262)
Q Consensus        92 ~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~  171 (262)
                      +.+|+.+++.++||||+++++++          ......+++|||+.+++|.+.+.    ....+++..++.++.|++.|
T Consensus        93 ~~~E~~~l~~l~hpniv~~~~~~----------~~~~~~~lv~e~~~gg~L~~~l~----~~~~~~~~~~~~i~~qi~~~  158 (504)
T 3q5i_A           93 IYNEISLLKSLDHPNIIKLFDVF----------EDKKYFYLVTEFYEGGELFEQII----NRHKFDECDAANIMKQILSG  158 (504)
T ss_dssp             HHHHHHHHHTCCCTTBCCEEEEE----------ECSSEEEEEEECCTTCBHHHHHH----HHSCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCCCeEEEEE----------EcCCEEEEEEecCCCCcHHHHHH----HcCCCCHHHHHHHHHHHHHH
Confidence            88999999999999999999988          34677999999999999998886    34559999999999999999


Q ss_pred             HHHHHcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC----ccCcccCCcccchhhhhhhhhhhhhcCc
Q 024842          172 LKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF----ALGQRRYSCRNGLLSIVLHLSELLSCGT  247 (262)
Q Consensus       172 l~~lH~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~~~~~~~~d~~s~g~~~~e~~~~~~  247 (262)
                      |.|||+.+  |+||||||+|||++.++. ...+||+|||++.......    ..+++.|.+||-+..      ......|
T Consensus       159 l~~lH~~~--ivH~Dlkp~Nil~~~~~~-~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~------~~~~~~D  229 (504)
T 3q5i_A          159 ICYLHKHN--IVHRDIKPENILLENKNS-LLNIKIVDFGLSSFFSKDYKLRDRLGTAYYIAPEVLKK------KYNEKCD  229 (504)
T ss_dssp             HHHHHHTT--EECSCCSGGGEEESSTTC-CSSEEECCCTTCEECCTTSCBCCCCSCTTTCCHHHHTT------CBCTHHH
T ss_pred             HHHHHHCC--eEeCCCcHHHEEEecCCC-CccEEEEECCCCEEcCCCCccccccCCcCCCCHHHhcc------CCCchHH
Confidence            99999999  999999999999986642 2359999999998765432    357788888875421      1223468


Q ss_pred             ccchheeheecccCC
Q 024842          248 VRVIQILMRELMFGR  262 (262)
Q Consensus       248 v~~~g~~~~~l~~G~  262 (262)
                      +||+|+++|+|++|+
T Consensus       230 iwslG~il~~ll~g~  244 (504)
T 3q5i_A          230 VWSCGVIMYILLCGY  244 (504)
T ss_dssp             HHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHHhCC
Confidence            888888888888774

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A

Probab=100.00  E-value=1.1e-33  Score=234.40  Aligned_cols=190  Identities=22%  Similarity=0.335  Sum_probs=137.0

Q ss_pred             CceEEE---EEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhC
Q 024842           26 NRYRIL---RQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLF  102 (262)
Q Consensus        26 ~~y~~~---~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l  102 (262)
                      ++|++.   +.||+|+||.||+|.+..+++                      .||+|++....   ...+.+|+.+++.+
T Consensus         8 ~~y~~~~~~~~lG~G~~g~V~~~~~~~~~~----------------------~vavK~~~~~~---~~~~~~e~~~l~~l   62 (325)
T 3kn6_A            8 QHYDLDLKDKPLGEGSFSICRKCVHKKSNQ----------------------AFAVKIISKRM---EANTQKEITALKLC   62 (325)
T ss_dssp             HHEEECTTSCCSEEETTEEEEEEEETTTCC----------------------EEEEEEEEGGG---HHHHHHHHHHHHHT
T ss_pred             hccccccCCCccccCCCeEEEEEEECCCCC----------------------EEEEEEEChhh---hhhHHHHHHHHHHh
Confidence            457765   789999999999999987655                      67888764332   35567899999999


Q ss_pred             C-CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCC
Q 024842          103 S-HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPP  181 (262)
Q Consensus       103 ~-h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~  181 (262)
                      . ||||+++++++          ......|++||++.+++|.+++.    ....+++..++.++.|++.||.|||+++  
T Consensus        63 ~~h~niv~~~~~~----------~~~~~~~lv~e~~~~~~L~~~l~----~~~~~~~~~~~~i~~qi~~~l~~LH~~~--  126 (325)
T 3kn6_A           63 EGHPNIVKLHEVF----------HDQLHTFLVMELLNGGELFERIK----KKKHFSETEASYIMRKLVSAVSHMHDVG--  126 (325)
T ss_dssp             TTCTTBCCEEEEE----------ECSSEEEEEECCCCSCBHHHHHH----HCSCCCHHHHHHHHHHHHHHHHHHHHTT--
T ss_pred             cCCCCeeEEEEEE----------EcCCEEEEEEEccCCCcHHHHHH----hcCCCCHHHHHHHHHHHHHHHHHHHHCC--
Confidence            7 99999999988          34677899999999999999886    4566999999999999999999999999  


Q ss_pred             eeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-----ccCcccCCcccchhhhhhhhhhhhhcCcccchheehe
Q 024842          182 YAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMR  256 (262)
Q Consensus       182 ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~  256 (262)
                      |+||||||+||+++.++. ...+||+|||++.......     ..++..|.+||.+....+.     ...|+|++|+++|
T Consensus       127 ivH~Dlkp~NIll~~~~~-~~~~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~-----~~~DiwslG~il~  200 (325)
T 3kn6_A          127 VVHRDLKPENLLFTDEND-NLEIKIIDFGFARLKPPDNQPLKTPCFTLHYAAPELLNQNGYD-----ESCDLWSLGVILY  200 (325)
T ss_dssp             EECCCCCGGGEEEEC-----CEEEECCCTTCEECCC----------------------CCCC-----HHHHHHHHHHHHH
T ss_pred             CeecCCCHHHEEEecCCC-cccEEEeccccceecCCCCCcccccCCCcCccCHHHhcCCCCC-----CccchHHHHHHHH
Confidence            999999999999976542 2369999999998654322     2356677777754332211     1246777777777


Q ss_pred             ecccCC
Q 024842          257 ELMFGR  262 (262)
Q Consensus       257 ~l~~G~  262 (262)
                      +|++|+
T Consensus       201 ~ll~g~  206 (325)
T 3kn6_A          201 TMLSGQ  206 (325)
T ss_dssp             HHHHSS
T ss_pred             HHHhCC
Confidence            776663

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=100.00  E-value=1.1e-33  Score=246.86  Aligned_cols=192  Identities=25%  Similarity=0.377  Sum_probs=149.5

Q ss_pred             CceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc--hHHHHHHHHHHHHhhhCC
Q 024842           26 NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN--NEQLEMVREEIRVSSLFS  103 (262)
Q Consensus        26 ~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~--~~~~~~~~~E~~~l~~l~  103 (262)
                      ++|++.+.||+|+||.||+|++..+++                      .+|+|++....  ......+.+|+.+++.++
T Consensus        37 ~~y~~~~~lG~G~~g~V~~~~~~~~~~----------------------~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~   94 (494)
T 3lij_A           37 EMYQRVKKLGSGAYGEVLLCRDKVTHV----------------------ERAIKIIRKTSVSTSSNSKLLEEVAVLKLLD   94 (494)
T ss_dssp             HHEEEEEEEECC---EEEEEEETTTCC----------------------EEEEEEEEC-----CTTHHHHHHHHHHTTCC
T ss_pred             cCeEEeeEEecCCCEEEEEEEECCCCc----------------------EEEEEEEeccccCchHHHHHHHHHHHHHhCC
Confidence            479999999999999999999987655                      56666654332  222466889999999999


Q ss_pred             CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCee
Q 024842          104 HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYA  183 (262)
Q Consensus       104 h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~iv  183 (262)
                      ||||+++++++          ......+++|||+.+++|.+.+.    ....+++..++.++.|++.||.|||+++  |+
T Consensus        95 hpniv~~~~~~----------~~~~~~~lv~e~~~~g~L~~~~~----~~~~~~~~~~~~i~~qi~~~l~~lH~~~--iv  158 (494)
T 3lij_A           95 HPNIMKLYDFF----------EDKRNYYLVMECYKGGELFDEII----HRMKFNEVDAAVIIKQVLSGVTYLHKHN--IV  158 (494)
T ss_dssp             CTTBCCEEEEE----------ECSSEEEEEEECCCSCBHHHHHH----HHSSCCHHHHHHHHHHHHHHHHHHHHTT--EE
T ss_pred             CCCCCeEEEEE----------EeCCEEEEEEecCCCCcHHHHHH----HcCCCCHHHHHHHHHHHHHHHHHHHHCC--ce
Confidence            99999999988          34677999999999999998876    3455999999999999999999999999  99


Q ss_pred             ecCCCCCcEEEecCCCCCCceEEeeccceeeccccC----ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecc
Q 024842          184 HNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELM  259 (262)
Q Consensus       184 H~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~  259 (262)
                      ||||||+|||++..+. ...+||+|||++.......    ..+++.|.+||-+..      ......||||+|+++|+|+
T Consensus       159 H~Dlkp~Nil~~~~~~-~~~~kl~DfG~a~~~~~~~~~~~~~gt~~y~aPE~l~~------~~~~~~DiwslG~il~~ll  231 (494)
T 3lij_A          159 HRDLKPENLLLESKEK-DALIKIVDFGLSAVFENQKKMKERLGTAYYIAPEVLRK------KYDEKCDVWSIGVILFILL  231 (494)
T ss_dssp             CSCCSGGGEEESCSST-TCCEEECCCTTCEECBTTBCBCCCCSCTTTCCHHHHTT------CBCTHHHHHHHHHHHHHHH
T ss_pred             eccCChhhEEEeCCCC-CCcEEEEECCCCeECCCCccccccCCCcCeeCHHHHcc------cCCCchhHHHHHHHHHHHH
Confidence            9999999999976442 2259999999998765432    357788888885421      1222467888888888888


Q ss_pred             cCC
Q 024842          260 FGR  262 (262)
Q Consensus       260 ~G~  262 (262)
                      +|+
T Consensus       232 ~g~  234 (494)
T 3lij_A          232 AGY  234 (494)
T ss_dssp             HSS
T ss_pred             hCC
Confidence            774

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=100.00  E-value=7.7e-34  Score=247.42  Aligned_cols=193  Identities=25%  Similarity=0.376  Sum_probs=153.7

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc--chHHHHHHHHHHHHhhhC
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ--NNEQLEMVREEIRVSSLF  102 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~--~~~~~~~~~~E~~~l~~l  102 (262)
                      .++|++.+.||+|+||.||+|++..+++                      .||+|++...  .......+.+|+.+++.+
T Consensus        21 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~----------------------~vavK~~~~~~~~~~~~~~~~~E~~~l~~l   78 (486)
T 3mwu_A           21 AERYNIVCMLGKGSFGEVLKCKDRITQQ----------------------EYAVKVINKASAKNKDTSTILREVELLKKL   78 (486)
T ss_dssp             HHHEEEEEEEECCSSSEEEEEEETTTCC----------------------EEEEEEEEHHHHBCSCHHHHHHHHHHHHHC
T ss_pred             hcceEEeEEEeecCCEEEEEEEECCCCC----------------------EEEEEEEecccccchHHHHHHHHHHHHHhC
Confidence            4689999999999999999999987655                      5777765432  122346788999999999


Q ss_pred             CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCe
Q 024842          103 SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPY  182 (262)
Q Consensus       103 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~i  182 (262)
                      +||||+++++++          ......+++||++.+++|.+.+.    ....+++..++.++.|++.||.|||+++  |
T Consensus        79 ~hpniv~~~~~~----------~~~~~~~lv~e~~~~~~L~~~~~----~~~~~~~~~~~~i~~qi~~al~~lH~~~--i  142 (486)
T 3mwu_A           79 DHPNIMKLFEIL----------EDSSSFYIVGELYTGGELFDEII----KRKRFSEHDAARIIKQVFSGITYMHKHN--I  142 (486)
T ss_dssp             CCTTBCCEEEEE----------ECSSEEEEEECCCCSCBHHHHHH----HHSSCCHHHHHHHHHHHHHHHHHHHHTT--C
T ss_pred             CCCCcCeEEEEE----------EcCCEEEEEEEcCCCCcHHHHHH----hcCCCCHHHHHHHHHHHHHHHHHHHHCC--e
Confidence            999999999987          34677999999999999998876    3356999999999999999999999999  9


Q ss_pred             eecCCCCCcEEEecCCCCCCceEEeeccceeeccccC----ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheec
Q 024842          183 AHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMREL  258 (262)
Q Consensus       183 vH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l  258 (262)
                      +||||||+|||++..+. ...+||+|||++.......    ..+++.|.+||-+...      .....||||+|+++|+|
T Consensus       143 vH~Dlkp~Nil~~~~~~-~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~------~~~~~DiwslG~il~~l  215 (486)
T 3mwu_A          143 VHRDLKPENILLESKEK-DCDIKIIDFGLSTCFQQNTKMKDRIGTAYYIAPEVLRGT------YDEKCDVWSAGVILYIL  215 (486)
T ss_dssp             CCSCCSGGGEEESSSST-TCCEEECSCSCTTTBCCC----CCTTGGGGCCGGGGGSC------CCHHHHHHHHHHHHHHH
T ss_pred             EeccCchHHEEEecCCC-CCCEEEEECCcCeECCCCCccCCCcCCCCCCCHHHhCCC------CCchhhHHHHHHHHHHH
Confidence            99999999999965432 2269999999998654332    3577888888855321      12245788888888888


Q ss_pred             ccCC
Q 024842          259 MFGR  262 (262)
Q Consensus       259 ~~G~  262 (262)
                      ++|+
T Consensus       216 l~g~  219 (486)
T 3mwu_A          216 LSGT  219 (486)
T ss_dssp             HHSS
T ss_pred             HhCC
Confidence            7774

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*

Probab=100.00  E-value=5.9e-33  Score=226.66  Aligned_cols=191  Identities=22%  Similarity=0.286  Sum_probs=153.4

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc---chHHHHHHHHHHHHhhh
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ---NNEQLEMVREEIRVSSL  101 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~---~~~~~~~~~~E~~~l~~  101 (262)
                      .++|.+.+.||+|+||.||+|.+..+++                      .+++|.+...   .....+.+.+|+.+++.
T Consensus        14 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~----------------------~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~   71 (294)
T 2rku_A           14 RRRYVRGRFLGKGGFAKCFEISDADTKE----------------------VFAGKIVPKSLLLKPHQREKMSMEISIHRS   71 (294)
T ss_dssp             TEEEEEEEEEEEETTEEEEEEEETTTCC----------------------EEEEEEEEGGGCCSHHHHHHHHHHHHHHHT
T ss_pred             ccceEEEEEEeecCCEEEEEEEECCCCc----------------------eEEEEEechhhccCHHHHHHHHHHHHHHHh
Confidence            4689999999999999999999987655                      5666655433   34456778899999999


Q ss_pred             CCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCC
Q 024842          102 FSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPP  181 (262)
Q Consensus       102 l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~  181 (262)
                      ++||||+++++++          ......+++||++.+++|.+++.    ....+++..++.++.|++.||.|||+.+  
T Consensus        72 l~h~~iv~~~~~~----------~~~~~~~lv~e~~~~~~L~~~~~----~~~~~~~~~~~~i~~qi~~~l~~lH~~~--  135 (294)
T 2rku_A           72 LAHQHVVGFHGFF----------EDNDFVFVVLELCRRRSLLELHK----RRKALTEPEARYYLRQIVLGCQYLHRNR--  135 (294)
T ss_dssp             CCCTTBCCEEEEE----------ECSSEEEEEEECCTTCBHHHHHH----HHCSCCHHHHHHHHHHHHHHHHHHHHTT--
T ss_pred             CCCCCEeeeeeee----------ccCCEEEEEEecCCCCCHHHHHH----hcCCCCHHHHHHHHHHHHHHHHHHHHCC--
Confidence            9999999999987          33567899999999999999876    3456999999999999999999999998  


Q ss_pred             eeecCCCCCcEEEecCCCCCCceEEeeccceeecccc-----CccCcccCCcccchhhhhhhhhhhhhcCcccchheehe
Q 024842          182 YAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSK-----FALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMR  256 (262)
Q Consensus       182 ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~-----~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~  256 (262)
                      ++|+||||+||+++.++    .++|+|||++......     ...++..|.+||.+.....     ....|+|++|++++
T Consensus       136 i~H~dl~p~Nil~~~~~----~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~-----~~~~Di~slG~~l~  206 (294)
T 2rku_A          136 VIHRDLKLGNLFLNEDL----EVKIGDFGLATKVEYDGERKKVLCGTPNYIAPEVLSKKGH-----SFEVDVWSIGCIMY  206 (294)
T ss_dssp             EECCCCCGGGEEECTTC----CEEECCCTTCEECCSTTCCBCCCCSCCSSCCHHHHTTSCB-----CTHHHHHHHHHHHH
T ss_pred             ccccCCChHhEEEcCCC----CEEEEeccCceecccCccccccccCCCCcCCcchhccCCC-----CchhhHHHHHHHHH
Confidence            99999999999998776    6999999999876422     2346667777775533221     12357888888888


Q ss_pred             ecccCC
Q 024842          257 ELMFGR  262 (262)
Q Consensus       257 ~l~~G~  262 (262)
                      +|++|+
T Consensus       207 ~l~~g~  212 (294)
T 2rku_A          207 TLLVGK  212 (294)
T ss_dssp             HHHHSS
T ss_pred             HHHhCC
Confidence            877774

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...

Probab=100.00  E-value=2e-33  Score=227.26  Aligned_cols=191  Identities=24%  Similarity=0.369  Sum_probs=154.5

Q ss_pred             CceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc-chHHHHHHHHHHHHhhhCCC
Q 024842           26 NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ-NNEQLEMVREEIRVSSLFSH  104 (262)
Q Consensus        26 ~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~-~~~~~~~~~~E~~~l~~l~h  104 (262)
                      ++|++.+.||+|+||.||+|.+..+++                      .+++|.+... .....+.+.+|+.+++.++|
T Consensus         7 ~~y~~~~~lg~G~~g~V~~~~~~~~~~----------------------~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h   64 (276)
T 2yex_A            7 EDWDLVQTLGEGAYGEVQLAVNRVTEE----------------------AVAVKIVDMKRAVDCPENIKKEICINKMLNH   64 (276)
T ss_dssp             HHEEEEEEEEECSSSEEEEEEETTTCC----------------------EEEEEEEEGGGCTTHHHHHHHHHHHHHTCCC
T ss_pred             cceEEEEEeecCCCcEEEEEEECCCCc----------------------EEEEEEeeeccchhhhHHHHHHHHHHHhcCC
Confidence            589999999999999999999876654                      5777766543 23445778899999999999


Q ss_pred             CCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeee
Q 024842          105 RNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAH  184 (262)
Q Consensus       105 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH  184 (262)
                      |||+++++++          ......+++||++.+++|.+++.    ....+++..++.++.|++.||.|||+.+  ++|
T Consensus        65 ~~i~~~~~~~----------~~~~~~~lv~e~~~~~~L~~~l~----~~~~~~~~~~~~~~~~i~~~l~~lH~~~--i~H  128 (276)
T 2yex_A           65 ENVVKFYGHR----------REGNIQYLFLEYCSGGELFDRIE----PDIGMPEPDAQRFFHQLMAGVVYLHGIG--ITH  128 (276)
T ss_dssp             TTBCCEEEEE----------EETTEEEEEEECCTTEEGGGGSB----TTTBCCHHHHHHHHHHHHHHHHHHHHTT--EEC
T ss_pred             CCceeeeeEE----------EcCCEEEEEEEecCCCcHHHHHh----hccCCCHHHHHHHHHHHHHHHHHHHhCC--eec
Confidence            9999999987          33567899999999999998875    4456999999999999999999999999  999


Q ss_pred             cCCCCCcEEEecCCCCCCceEEeeccceeecccc-------CccCcccCCcccchhhhhhhhhhhhhcCcccchheehee
Q 024842          185 NDVKPGNILITCRKGQPPLAILMDFGSARPAQSK-------FALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRE  257 (262)
Q Consensus       185 ~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~-------~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~  257 (262)
                      +||||+||+++.++    .++|+|||++......       ...++..|.+||.+..-...    ....|+|++|+++++
T Consensus       129 ~dl~p~Nil~~~~~----~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~----~~~~Di~slG~il~~  200 (276)
T 2yex_A          129 RDIKPENLLLDERD----NLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFH----AEPVDVWSCGIVLTA  200 (276)
T ss_dssp             SCCSGGGEEECTTC----CEEECCCTTCEECEETTEECCBCCCCSCGGGCCGGGGTCSSBC----HHHHHHHHHHHHHHH
T ss_pred             cCCChHHEEEccCC----CEEEeeCCCccccCCCcchhcccCCccccCccChHHHhcCCCC----CCcchHHHHHHHHHH
Confidence            99999999998766    6999999999865322       23467778888766433211    123688888888888


Q ss_pred             cccCC
Q 024842          258 LMFGR  262 (262)
Q Consensus       258 l~~G~  262 (262)
                      |++|+
T Consensus       201 l~~g~  205 (276)
T 2yex_A          201 MLAGE  205 (276)
T ss_dssp             HHHSS
T ss_pred             HHhCC
Confidence            88874

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*

Probab=100.00  E-value=2.8e-33  Score=230.59  Aligned_cols=218  Identities=20%  Similarity=0.203  Sum_probs=148.7

Q ss_pred             hhhhhccCCCCCceeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc--c
Q 024842            8 LNALYDSVNGGGDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ--N   85 (262)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~--~   85 (262)
                      .+..-+..+....+.+..++|++.+.||+|+||.||+|++.....                   .+..+|+|.+...  .
T Consensus        16 ~~~~eel~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~-------------------~~~~vavK~~~~~~~~   76 (313)
T 3brb_A           16 PRGSEELQNKLEDVVIDRNLLILGKILGEGEFGSVMEGNLKQEDG-------------------TSLKVAVKTMKLDNSS   76 (313)
T ss_dssp             --------CCTTTTBCCGGGEEEEEEEEC-CCCCEEEEEEECTTS-------------------CEEEEEEEEC---CCC
T ss_pred             cCchHhhhhhHHhcccCHHHeeeccceeecCCeEEEEEEEeccCC-------------------ceeEEEEEEEeccccc
Confidence            455667778888889999999999999999999999998765322                   2336888887654  3


Q ss_pred             hHHHHHHHHHHHHhhhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhh--hcCCCCCHHHHHH
Q 024842           86 NEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQ--TKKEFFSTSDVLQ  163 (262)
Q Consensus        86 ~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~--~~~~~~~~~~~~~  163 (262)
                      ....+.+.+|+.+++.++||||+++++++...     ........+++|+++.+++|.+++....  .....+++..++.
T Consensus        77 ~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~-----~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~  151 (313)
T 3brb_A           77 QREIEEFLSEAACMKDFSHPNVIRLLGVCIEM-----SSQGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLK  151 (313)
T ss_dssp             HHHHHHHHHHHHHHHTCCCTTBCCCCEEEEC------------CEEEEEECCTTCBHHHHHHHTTBTTSCCCCCHHHHHH
T ss_pred             hhHHHHHHHHHHHHhcCCCCCeeeeeEEEeec-----cccCCcccEEEEecccCCCHHHHHHHhhhhcCCccCCHHHHHH
Confidence            44457789999999999999999999987421     0011235699999999999999885432  2345699999999


Q ss_pred             HHHHHHHHHHHHHcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-------ccCcccCCcccchhhhh
Q 024842          164 IFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-------ALGQRRYSCRNGLLSIV  236 (262)
Q Consensus       164 i~~ql~~~l~~lH~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-------~~~~~~~~~~~d~~s~g  236 (262)
                      ++.|++.||.|||+++  ++||||||+||+++.++    .+||+|||++.......       ..++..|.+||.+....
T Consensus       152 i~~qi~~aL~~LH~~~--ivH~dikp~NIli~~~~----~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  225 (313)
T 3brb_A          152 FMVDIALGMEYLSNRN--FLHRDLAARNCMLRDDM----TVCVADFGLSKKIYSGDYYRQGRIAKMPVKWIAIESLADRV  225 (313)
T ss_dssp             HHHHHHHHHHHHHTTT--CCCCCCSGGGEEECTTS----CEEECSCSCC----------------CCGGGSCHHHHHSSC
T ss_pred             HHHHHHHHHHHHHhCC--cccCCCCcceEEEcCCC----cEEEeecCcceecccccccCcccccCCCccccCchhhcCCC
Confidence            9999999999999998  99999999999998776    69999999998654322       12344555555332111


Q ss_pred             hhhhhhhhcCcccchheeheeccc
Q 024842          237 LHLSELLSCGTVRVIQILMRELMF  260 (262)
Q Consensus       237 ~~~~e~~~~~~v~~~g~~~~~l~~  260 (262)
                           .....|+||+|+++|+|++
T Consensus       226 -----~~~~~Di~slG~il~el~~  244 (313)
T 3brb_A          226 -----YTSKSDVWAFGVTMWEIAT  244 (313)
T ss_dssp             -----CCHHHHHHHHHHHHHHHHT
T ss_pred             -----ccchhhhHHHHHHHHHHHh
Confidence                 1112355555555555555

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*

Probab=100.00  E-value=1.6e-33  Score=235.33  Aligned_cols=193  Identities=25%  Similarity=0.346  Sum_probs=151.9

Q ss_pred             CceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc---chHHHHHHHHHHHHhhhC
Q 024842           26 NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ---NNEQLEMVREEIRVSSLF  102 (262)
Q Consensus        26 ~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~---~~~~~~~~~~E~~~l~~l  102 (262)
                      +.|++.+.||+|+||.||+|++..+++                      .||+|++...   .....+.+.+|+.+++.+
T Consensus        54 ~~y~~~~~lG~G~~g~Vy~a~~~~~~~----------------------~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l  111 (348)
T 1u5q_A           54 KLFSDLREIGHGSFGAVYFARDVRNSE----------------------VVAIKKMSYSGKQSNEKWQDIIKEVRFLQKL  111 (348)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTTE----------------------EEEEEEEESCSSCHHHHHHHHHHHHHHHHHC
T ss_pred             hheeeeeEEccCCCEEEEEEEEccCCe----------------------EEEEEEEccccccchHHHHHHHHHHHHHHhC
Confidence            569999999999999999999876655                      6777776543   233456788999999999


Q ss_pred             CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCe
Q 024842          103 SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPY  182 (262)
Q Consensus       103 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~i  182 (262)
                      +||||+++++++.          .....+++|||+. |++.+++..   ....+++..++.++.|++.||.|||+++  |
T Consensus       112 ~hpniv~~~~~~~----------~~~~~~lv~e~~~-g~l~~~l~~---~~~~l~~~~~~~i~~qi~~aL~~LH~~~--i  175 (348)
T 1u5q_A          112 RHPNTIQYRGCYL----------REHTAWLVMEYCL-GSASDLLEV---HKKPLQEVEIAAVTHGALQGLAYLHSHN--M  175 (348)
T ss_dssp             CCTTBCCEEEEEE----------ETTEEEEEEECCS-EEHHHHHHH---HTSCCCHHHHHHHHHHHHHHHHHHHHTT--C
T ss_pred             CCCCEeeEEEEEE----------ECCeEEEEEecCC-CCHHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHHHhCC--e
Confidence            9999999999873          3567899999987 678777642   3456999999999999999999999998  9


Q ss_pred             eecCCCCCcEEEecCCCCCCceEEeeccceeecccc-CccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecccC
Q 024842          183 AHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSK-FALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMFG  261 (262)
Q Consensus       183 vH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~-~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~G  261 (262)
                      +||||||+|||++.++    .+||+|||++...... ...+++.|.+||.+.+....  ......||||+|++++||++|
T Consensus       176 vH~Dlkp~NIll~~~~----~~kL~DfG~a~~~~~~~~~~gt~~y~aPE~~~~~~~~--~~~~~~DiwslG~il~ell~g  249 (348)
T 1u5q_A          176 IHRDVKAGNILLSEPG----LVKLGDFGSASIMAPANSFVGTPYWMAPEVILAMDEG--QYDGKVDVWSLGITCIELAER  249 (348)
T ss_dssp             BCCCCSGGGEEEETTT----EEEECCCTTCBSSSSBCCCCSCGGGCCHHHHHTTSSC--CBCTHHHHHHHHHHHHHHHHS
T ss_pred             eeCCCCHHHEEECCCC----CEEEeeccCceecCCCCcccCCcceeCHhhhccccCC--CCCcHHHHHHHHHHHHHHHhC
Confidence            9999999999998776    7999999999876533 34577778887765321100  111235788888888888777


Q ss_pred             C
Q 024842          262 R  262 (262)
Q Consensus       262 ~  262 (262)
                      +
T Consensus       250 ~  250 (348)
T 1u5q_A          250 K  250 (348)
T ss_dssp             S
T ss_pred             C
Confidence            4

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=100.00  E-value=1.8e-33  Score=253.25  Aligned_cols=193  Identities=20%  Similarity=0.238  Sum_probs=154.1

Q ss_pred             ecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc---chHHHHHHHHHHHHh
Q 024842           23 INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ---NNEQLEMVREEIRVS   99 (262)
Q Consensus        23 ~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~---~~~~~~~~~~E~~~l   99 (262)
                      +..++|++.+.||+|+||.||+|++..+++                      .||+|++...   .....+.+..|..++
T Consensus       338 ~~~~~f~~~~~LG~G~fG~V~~~~~~~~~~----------------------~vAvK~l~~~~~~~~~~~~~~~~E~~~l  395 (674)
T 3pfq_A          338 MKLTDFNFLMVLGKGSFGKVMLSERKGTDE----------------------LYAVKILKKDVVIQDDDVECTMVEKRVL  395 (674)
T ss_dssp             --CTTEEEEEESSBTTTBCEEEEEESSSCC----------------------EEEEEEEEHHHHHHTTTTHHHHHHHHHH
T ss_pred             ccccceEEEEEEccCCCEEEEEEEECCCCc----------------------EEEEEEEeccccccHHHHHHHHHHHHHH
Confidence            456789999999999999999999987655                      5677765432   222345677888888


Q ss_pred             hhC-CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcC
Q 024842          100 SLF-SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSL  178 (262)
Q Consensus       100 ~~l-~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~  178 (262)
                      ..+ +||+|++++.++          ......|++|||+.+++|.+++.    ....+++..++.++.||+.||+|||+.
T Consensus       396 ~~~~~~~~i~~l~~~~----------~~~~~~~lV~E~~~gg~L~~~l~----~~~~~~~~~~~~~~~qi~~aL~~LH~~  461 (674)
T 3pfq_A          396 ALPGKPPFLTQLHSCF----------QTMDRLYFVMEYVNGGDLMYHIQ----QVGRFKEPHAVFYAAEIAIGLFFLQSK  461 (674)
T ss_dssp             TCTTCCTTBCCEEEEC----------BCSSEEEEEEECCCSCBHHHHHH----HHSSCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HhccCCCeEEEEEEEE----------EeCCEEEEEEeCcCCCcHHHHHH----hcCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            877 699999999887          44678999999999999999886    335599999999999999999999999


Q ss_pred             CCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccc-----cCccCcccCCcccchhhhhhhhhhhhhcCcccchhe
Q 024842          179 EPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQS-----KFALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQI  253 (262)
Q Consensus       179 ~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~-----~~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~  253 (262)
                      +  |+||||||+|||++.++    .+||+|||+|.....     ....+++.|.+||-+..-++     ....|+||+|+
T Consensus       462 g--IiHrDLKp~NILl~~~g----~ikL~DFGla~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~-----~~~~DvwSlGv  530 (674)
T 3pfq_A          462 G--IIYRDLKLDNVMLDSEG----HIKIADFGMCKENIWDGVTTKTFCGTPDYIAPEIIAYQPY-----GKSVDWWAFGV  530 (674)
T ss_dssp             S--EECCCCCSTTEEECSSS----CEEECCCTTCEECCCTTCCBCCCCSCSSSCCHHHHTCCCB-----STHHHHHHHHH
T ss_pred             C--eEeccCChhhEEEcCCC----cEEEeecceeeccccCCcccccccCCCcccCHhhhcCCCC-----CccceEechHH
Confidence            9  99999999999998877    699999999986432     22357888888886543322     22357888888


Q ss_pred             eheecccCC
Q 024842          254 LMRELMFGR  262 (262)
Q Consensus       254 ~~~~l~~G~  262 (262)
                      ++|||++|+
T Consensus       531 ilyelltG~  539 (674)
T 3pfq_A          531 LLYEMLAGQ  539 (674)
T ss_dssp             HHHHHHHSS
T ss_pred             HHHHHHcCC
Confidence            888888874

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...

Probab=100.00  E-value=1.7e-33  Score=228.21  Aligned_cols=192  Identities=23%  Similarity=0.292  Sum_probs=150.6

Q ss_pred             cCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc---hHHHHHHHHHHHHhh
Q 024842           24 NENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN---NEQLEMVREEIRVSS  100 (262)
Q Consensus        24 ~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~---~~~~~~~~~E~~~l~  100 (262)
                      ..++|++.+.||+|+||.||+|.+..+++                      .+++|.+....   ......+.+|+.+++
T Consensus         7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~----------------------~vavK~~~~~~~~~~~~~~~~~~e~~~l~   64 (279)
T 3fdn_A            7 ALEDFEIGRPLGKGKFGNVYLAREKQSKF----------------------ILALKVLFKAQLEKAGVEHQLRREVEIQS   64 (279)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEETTTCC----------------------EEEEEEEEHHHHHHHTCHHHHHHHHHHHT
T ss_pred             ecccEEEeeEEecCCCeEEEEEEEccCCc----------------------EEEEEEEeccccchhhHHHHHHHHHHHHH
Confidence            45789999999999999999999887654                      57777654332   222456889999999


Q ss_pred             hCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCC
Q 024842          101 LFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEP  180 (262)
Q Consensus       101 ~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~  180 (262)
                      .++||||+++++++          ......+++||++.+++|.+++.    ....+++..++.++.|++.||.|||+.+ 
T Consensus        65 ~l~h~~i~~~~~~~----------~~~~~~~lv~e~~~~~~l~~~l~----~~~~~~~~~~~~~~~qi~~~l~~LH~~~-  129 (279)
T 3fdn_A           65 HLRHPNILRLYGYF----------HDATRVYLILEYAPLGTVYRELQ----KLSKFDEQRTATYITELANALSYCHSKR-  129 (279)
T ss_dssp             TCCCTTBCCEEEEE----------ECSSEEEEEECCCTTEEHHHHHH----HHSSCCHHHHHHHHHHHHHHHHHHHTTT-
T ss_pred             cCCCCCCcchhheE----------ecCCEEEEEEecCCCCcHHHHHH----hcCCCCHHHHHHHHHHHHHHHHHHHhCC-
Confidence            99999999999987          33567999999999999999886    3345999999999999999999999998 


Q ss_pred             CeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC---ccCcccCCcccchhhhhhhhhhhhhcCcccchheehee
Q 024842          181 PYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF---ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRE  257 (262)
Q Consensus       181 ~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~---~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~  257 (262)
                       ++|+||||+||+++.++    .++|+|||++.......   ..++..|.+||.+....     .....|+|++|+++++
T Consensus       130 -i~H~dlkp~Nili~~~~----~~~l~Dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-----~~~~~Di~slG~il~~  199 (279)
T 3fdn_A          130 -VIHRDIKPENLLLGSAG----ELKIADFGWSVHAPSSRRTDLCGTLDYLPPEMIEGRM-----HDEKVDLWSLGVLCYE  199 (279)
T ss_dssp             -CEECCCCGGGEEECTTS----CEEECSCCEESCC--------CCCCTTCCHHHHTTCC-----CCTTHHHHHHHHHHHH
T ss_pred             -EecccCChHhEEEcCCC----CEEEEeccccccCCcccccccCCCCCccCHhHhccCC-----CCccchhHhHHHHHHH
Confidence             99999999999998776    69999999987654332   35667777777543221     1123577777777777


Q ss_pred             cccCC
Q 024842          258 LMFGR  262 (262)
Q Consensus       258 l~~G~  262 (262)
                      |++|+
T Consensus       200 l~~g~  204 (279)
T 3fdn_A          200 FLVGK  204 (279)
T ss_dssp             HHHSS
T ss_pred             HHHCC
Confidence            77764

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*

Probab=100.00  E-value=1.8e-33  Score=238.53  Aligned_cols=200  Identities=23%  Similarity=0.339  Sum_probs=154.2

Q ss_pred             CCceeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc--chHHHHHHHHH
Q 024842           18 GGDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ--NNEQLEMVREE   95 (262)
Q Consensus        18 ~~~~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~--~~~~~~~~~~E   95 (262)
                      ...+.+.+++|++.+.||+|+||.||+|.+.. +                      ..||+|++...  .....+.+.+|
T Consensus        48 ~~~~~~~~~~y~~~~~LG~G~fg~Vy~~~~~~-~----------------------~~vaiK~~~~~~~~~~~~~~~~~E  104 (390)
T 2zmd_A           48 NECISVKGRIYSILKQIGSGGSSKVFQVLNEK-K----------------------QIYAIKYVNLEEADNQTLDSYRNE  104 (390)
T ss_dssp             -CCEEETTEEEEEEEEEECCSSEEEEEEECTT-C----------------------CEEEEEEEECTTCCHHHHHHHHHH
T ss_pred             cccccccCCceEEEEEEccCCCeEEEEEEcCC-C----------------------CEEEEEEEecccccHHHHHHHHHH
Confidence            34566777889999999999999999998753 2                      36788876543  34456788999


Q ss_pred             HHHhhhCC--CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHH
Q 024842           96 IRVSSLFS--HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLK  173 (262)
Q Consensus        96 ~~~l~~l~--h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~  173 (262)
                      +.+++.++  ||||+++++++.          .....|++|| +.+++|.+++.    ....+++..++.++.|++.||.
T Consensus       105 i~~l~~l~~~~~~iv~~~~~~~----------~~~~~~lv~E-~~~~~L~~~l~----~~~~~~~~~~~~i~~qi~~aL~  169 (390)
T 2zmd_A          105 IAYLNKLQQHSDKIIRLYDYEI----------TDQYIYMVME-CGNIDLNSWLK----KKKSIDPWERKSYWKNMLEAVH  169 (390)
T ss_dssp             HHHHHHHTTTCTTBCCEEEEEE----------CSSEEEEEEE-CCSEEHHHHHH----HCSSCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcccCCCeEEEEEEEEe----------cCCEEEEEEe-cCCCCHHHHHH----hcCCCCHHHHHHHHHHHHHHHH
Confidence            99999996  599999998873          3566899999 78889999886    3456899999999999999999


Q ss_pred             HHHcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeecccc-------CccCcccCCcccchhhhhhh------hh
Q 024842          174 HMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSK-------FALGQRRYSCRNGLLSIVLH------LS  240 (262)
Q Consensus       174 ~lH~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~-------~~~~~~~~~~~~d~~s~g~~------~~  240 (262)
                      |||+.+  |+||||||+|||++. +    .+||+|||++......       ...+++.|.+||.+......      ..
T Consensus       170 ~lH~~~--ivHrDlkp~NIll~~-~----~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~  242 (390)
T 2zmd_A          170 TIHQHG--IVHSDLKPANFLIVD-G----MLKLIDFGIANQMQPDTTSVVKDSQVGAVNYMPPEAIKDMSSSRENGKSKS  242 (390)
T ss_dssp             HHHTTT--CCCCCCCGGGEEESS-S----CEEECCCSSSCCC---------CCSCCCGGGCCHHHHHCC-----------
T ss_pred             HHHHCC--eeecCCCHHHEEEEC-C----eEEEEecCccccccCCCccccCCCCCcCCCccChHHhhhcccccccccccc
Confidence            999998  999999999999953 3    5999999999876432       23577888888866432110      01


Q ss_pred             hhhhcCcccchheeheecccCC
Q 024842          241 ELLSCGTVRVIQILMRELMFGR  262 (262)
Q Consensus       241 e~~~~~~v~~~g~~~~~l~~G~  262 (262)
                      ......||||+|+++|+|++|+
T Consensus       243 ~~~~~~DiwSlGvil~ell~G~  264 (390)
T 2zmd_A          243 KISPKSDVWSLGCILYYMTYGK  264 (390)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHSS
T ss_pred             CCCChhhHHHHHHHHHHHHHCC
Confidence            1223468888888888888875

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*

Probab=100.00  E-value=2.2e-33  Score=227.72  Aligned_cols=200  Identities=19%  Similarity=0.219  Sum_probs=152.0

Q ss_pred             CceeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc-chHHHHHHHHHHH
Q 024842           19 GDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ-NNEQLEMVREEIR   97 (262)
Q Consensus        19 ~~~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~-~~~~~~~~~~E~~   97 (262)
                      ....+..++|++.+.||+|+||.||+|++.....                   ....+++|.+... .....+.+.+|+.
T Consensus         5 ~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~-------------------~~~~vavK~~~~~~~~~~~~~~~~E~~   65 (281)
T 3cc6_A            5 PQYGIAREDVVLNRILGEGFFGEVYEGVYTNHKG-------------------EKINVAVKTCKKDCTLDNKEKFMSEAV   65 (281)
T ss_dssp             CCCSCCGGGEEEEEEEEECSSSEEEEEEEECTTC-------------------CEEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             ccceecccceEEEEEEEecCCeeEEEeEEcCCCC-------------------CcceEEEEecccccCchHHHHHHHHHH
Confidence            3445667899999999999999999999765422                   1235788877654 3445678899999


Q ss_pred             HhhhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHc
Q 024842           98 VSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHS  177 (262)
Q Consensus        98 ~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~  177 (262)
                      +++.++||||+++++++.           ....+++||++.+++|.+++..   ....+++..++.++.|++.||.|||+
T Consensus        66 ~l~~l~h~~i~~~~~~~~-----------~~~~~~v~e~~~~~~L~~~l~~---~~~~~~~~~~~~~~~~i~~~l~~lH~  131 (281)
T 3cc6_A           66 IMKNLDHPHIVKLIGIIE-----------EEPTWIIMELYPYGELGHYLER---NKNSLKVLTLVLYSLQICKAMAYLES  131 (281)
T ss_dssp             HHHHHCCTTBCCEEEEEC-----------SSSCEEEEECCTTCBHHHHHHH---HTTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhCCCCCcceEEEEEc-----------CCCCEEEEecCCCCCHHHHHHh---ccccCCHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999862           2456899999999999998863   33458999999999999999999999


Q ss_pred             CCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC------ccCcccCCcccchhhhhhhhhhhhhcCcccch
Q 024842          178 LEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF------ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVI  251 (262)
Q Consensus       178 ~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~------~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~  251 (262)
                      ++  ++|+||||+||+++.++    .+||+|||++.......      ..++..|.+||.+....     .....|+|++
T Consensus       132 ~~--i~H~dlkp~Nil~~~~~----~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-----~~~~~Di~sl  200 (281)
T 3cc6_A          132 IN--CVHRDIAVRNILVASPE----CVKLGDFGLSRYIEDEDYYKASVTRLPIKWMSPESINFRR-----FTTASDVWMF  200 (281)
T ss_dssp             TT--CCCCCCSGGGEEEEETT----EEEECCCCGGGCC---------CCCCCGGGCCHHHHHHCC-----CCHHHHHHHH
T ss_pred             CC--cccCCCccceEEECCCC----cEEeCccCCCcccccccccccccCCCCcceeCchhhccCC-----CCchhccHHH
Confidence            99  99999999999998877    79999999998654332      23445677776442211     1113567777


Q ss_pred             heeheeccc-CC
Q 024842          252 QILMRELMF-GR  262 (262)
Q Consensus       252 g~~~~~l~~-G~  262 (262)
                      |+++|+|++ |+
T Consensus       201 G~il~~llt~g~  212 (281)
T 3cc6_A          201 AVCMWEILSFGK  212 (281)
T ss_dssp             HHHHHHHHTTTC
T ss_pred             HHHHHHHHhCCC
Confidence            777777665 53

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*

Probab=100.00  E-value=5.6e-33  Score=229.38  Aligned_cols=201  Identities=21%  Similarity=0.265  Sum_probs=153.7

Q ss_pred             ceeecCCce-EEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc-hHHHHHHHHHHH
Q 024842           20 DVWINENRY-RILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN-NEQLEMVREEIR   97 (262)
Q Consensus        20 ~~~~~~~~y-~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~-~~~~~~~~~E~~   97 (262)
                      +..+..++| ++.+.||+|+||.||++.......                  ..+..||+|++.... ....+.+.+|+.
T Consensus        24 ~~~~~~~r~~~~~~~lG~G~~g~V~~~~~~~~~~------------------~~~~~vavK~~~~~~~~~~~~~~~~E~~   85 (318)
T 3lxp_A           24 DPTVFHKRYLKKIRDLGEGHFGKVSLYCYDPTND------------------GTGEMVAVKALKADAGPQHRSGWKQEID   85 (318)
T ss_dssp             CCCBCCGGGEEEEEEEEECSSEEEEEEEECSCC--------------------CCEEEEEEEECTTCCHHHHHHHHHHHH
T ss_pred             CCceecHHHHhhhheecCCCCeEEEEEEEccCCC------------------CCCcEEEEEEeccccChHHHHHHHHHHH
Confidence            333344555 999999999999999987543322                  134578999876553 344677899999


Q ss_pred             HhhhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHc
Q 024842           98 VSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHS  177 (262)
Q Consensus        98 ~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~  177 (262)
                      +++.++||||+++++++..        ......+++||++.+++|.+++.     ...+++..++.++.|++.||.|||+
T Consensus        86 ~l~~l~h~~iv~~~~~~~~--------~~~~~~~lv~e~~~~~~L~~~l~-----~~~~~~~~~~~i~~~l~~~l~~LH~  152 (318)
T 3lxp_A           86 ILRTLYHEHIIKYKGCCED--------AGAASLQLVMEYVPLGSLRDYLP-----RHSIGLAQLLLFAQQICEGMAYLHA  152 (318)
T ss_dssp             HHHHCCCTTBCCEEEEEEE--------TTTTEEEEEECCCTTCBHHHHGG-----GSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhCCCcchhhEEEEEec--------CCCceEEEEEecccCCcHHHHHh-----hCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999998731        23457899999999999999884     2349999999999999999999999


Q ss_pred             CCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC--------ccCcccCCcccchhhhhhhhhhhhhcCccc
Q 024842          178 LEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF--------ALGQRRYSCRNGLLSIVLHLSELLSCGTVR  249 (262)
Q Consensus       178 ~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~--------~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~  249 (262)
                      .+  ++|+||||+||+++.++    .++|+|||++.......        ..++..|.+||.+....+     ....|+|
T Consensus       153 ~~--ivH~Dikp~Nil~~~~~----~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~-----~~~~Di~  221 (318)
T 3lxp_A          153 QH--YIHRDLAARNVLLDNDR----LVKIGDFGLAKAVPEGHEYYRVREDGDSPVFWYAPECLKEYKF-----YYASDVW  221 (318)
T ss_dssp             TT--EECSCCSGGGEEECTTC----CEEECCGGGCEECCTTCSEEEC---CCCCGGGCCHHHHHHCEE-----EHHHHHH
T ss_pred             CC--ccCCCCchheEEEcCCC----CEEECCccccccccccccccccccCCCCCceeeChHHhcCCCC-----CcHHHHH
Confidence            99  99999999999998776    69999999998765432        234455777775432211     1235777


Q ss_pred             chheeheecccCC
Q 024842          250 VIQILMRELMFGR  262 (262)
Q Consensus       250 ~~g~~~~~l~~G~  262 (262)
                      ++|+++++|++|+
T Consensus       222 slG~il~~ll~g~  234 (318)
T 3lxp_A          222 SFGVTLYELLTHC  234 (318)
T ss_dssp             HHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHhCC
Confidence            7777777777763

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}

Probab=100.00  E-value=4.8e-33  Score=230.54  Aligned_cols=201  Identities=21%  Similarity=0.276  Sum_probs=156.0

Q ss_pred             eecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhh
Q 024842           22 WINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSL  101 (262)
Q Consensus        22 ~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~  101 (262)
                      .+..++|++.+.||+|+||.||+|+......                  ..+..||+|++........+.+.+|+.+++.
T Consensus        37 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~------------------~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~   98 (326)
T 2w1i_A           37 QFEERHLKFLQQLGKGNFGSVEMCRYDPLQD------------------NTGEVVAVKKLQHSTEEHLRDFEREIEILKS   98 (326)
T ss_dssp             CCCGGGEEEEEEEECCSSEEEEEEEECTTSS------------------SCCEEEEEEEESSCCSHHHHHHHHHHHHHHT
T ss_pred             ccCHHHceeeeeeccCCCeEEEEEEeccccC------------------CCceEEEEEEeccCCHHHHHHHHHHHHHHHh
Confidence            3457789999999999999999998532111                  1345789998877777777889999999999


Q ss_pred             CCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCC
Q 024842          102 FSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPP  181 (262)
Q Consensus       102 l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~  181 (262)
                      ++||||+++++++..        ......+++||++.+++|.+++..   ....+++..++.++.|++.||.|||+.+  
T Consensus        99 l~h~~iv~~~~~~~~--------~~~~~~~lv~e~~~~~~L~~~l~~---~~~~~~~~~~~~i~~qi~~aL~~LH~~~--  165 (326)
T 2w1i_A           99 LQHDNIVKYKGVCYS--------AGRRNLKLIMEYLPYGSLRDYLQK---HKERIDHIKLLQYTSQICKGMEYLGTKR--  165 (326)
T ss_dssp             CCCTTBCCEEEEECC------------CCEEEECCCTTCBHHHHHHH---STTSSCHHHHHHHHHHHHHHHHHHHHTT--
T ss_pred             CCCCCeeeEEEEEEe--------cCCCceEEEEECCCCCCHHHHHHh---cccCCCHHHHHHHHHHHHHHHHHHHhCC--
Confidence            999999999987631        233468999999999999998863   3345999999999999999999999998  


Q ss_pred             eeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC--------ccCcccCCcccchhhhhhhhhhhhhcCcccchhe
Q 024842          182 YAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF--------ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQI  253 (262)
Q Consensus       182 ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~--------~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~  253 (262)
                      ++||||||+||+++.++    .+||+|||++.......        ..++..|.+||.+....     .....|+|++|+
T Consensus       166 ivH~dikp~NIli~~~~----~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-----~~~~~Di~slG~  236 (326)
T 2w1i_A          166 YIHRDLATRNILVENEN----RVKIGDFGLTKVLPQDKEYYKVKEPGESPIFWYAPESLTESK-----FSVASDVWSFGV  236 (326)
T ss_dssp             EECSCCCGGGEEEEETT----EEEECCCTTCEECCSSCSEEECSSCCSCCGGGCCHHHHHHCE-----EEHHHHHHHHHH
T ss_pred             EeccCCCcceEEEcCCC----cEEEecCcchhhccccccccccccCCCCceeEECchhhcCCC-----CCchhhHHHHHH
Confidence            99999999999998877    79999999998765432        12344577776543321     112367888888


Q ss_pred             eheecccCC
Q 024842          254 LMRELMFGR  262 (262)
Q Consensus       254 ~~~~l~~G~  262 (262)
                      ++++|++|+
T Consensus       237 il~el~tg~  245 (326)
T 2w1i_A          237 VLYELFTYI  245 (326)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHhcC
Confidence            888887763

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...

Probab=100.00  E-value=3e-33  Score=227.10  Aligned_cols=195  Identities=25%  Similarity=0.339  Sum_probs=150.7

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc------hHHHHHHHHHHHH
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN------NEQLEMVREEIRV   98 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~------~~~~~~~~~E~~~   98 (262)
                      .++|++.+.||+|+||.||+|++..+++                      .+++|.+....      ....+.+.+|+.+
T Consensus         4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~----------------------~~avK~~~~~~~~~~~~~~~~~~~~~E~~~   61 (283)
T 3bhy_A            4 EDHYEMGEELGSGQFAIVRKCRQKGTGK----------------------EYAAKFIKKRRLSSSRRGVSREEIEREVNI   61 (283)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTCC----------------------EEEEEEEEBCSSTTCSSSBCHHHHHHHHHH
T ss_pred             hhhhhhHHhhcccCceEEEEEEEcCCCC----------------------eeehHHhhhccccccccchHHHHHHHHHHH
Confidence            4689999999999999999999987655                      45666554321      1124678899999


Q ss_pred             hhhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcC
Q 024842           99 SSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSL  178 (262)
Q Consensus        99 l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~  178 (262)
                      ++.++||||+++++++          ......+++||++.+++|.+++.    ....+++..++.++.|++.||.|||+.
T Consensus        62 l~~l~h~~i~~~~~~~----------~~~~~~~lv~e~~~~~~L~~~l~----~~~~~~~~~~~~~~~~i~~~l~~lH~~  127 (283)
T 3bhy_A           62 LREIRHPNIITLHDIF----------ENKTDVVLILELVSGGELFDFLA----EKESLTEDEATQFLKQILDGVHYLHSK  127 (283)
T ss_dssp             HHHCCCTTBCCEEEEE----------ECSSEEEEEEECCCSCBHHHHHH----HHSSCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHhCCCCCeeehhhee----------cCCCeEEEEEeecCCCcHHHHHH----hcCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            9999999999999987          33567899999999999999886    344599999999999999999999999


Q ss_pred             CCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC----ccCcccCCcccchhhhhhhhhhhhhcCcccchhee
Q 024842          179 EPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQIL  254 (262)
Q Consensus       179 ~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~  254 (262)
                      +  ++|+||||+||+++.++.....++|+|||++.......    ..+++.|.+||.+..-.     .....|+|++|++
T Consensus       128 ~--i~H~dl~p~Nil~~~~~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-----~~~~~Di~slG~i  200 (283)
T 3bhy_A          128 R--IAHFDLKPENIMLLDKNVPNPRIKLIDFGIAHKIEAGNEFKNIFGTPEFVAPEIVNYEP-----LGLEADMWSIGVI  200 (283)
T ss_dssp             T--EECSCCSGGGEEESCSSSSSCCEEECCCTTCEECC--------CCCGGGCCHHHHTTCC-----CCTHHHHHHHHHH
T ss_pred             C--ccCCCCChHHEEEecCCCCCCceEEEecccceeccCCCcccccCCCcCccCcceecCCC-----CCcchhhhhHHHH
Confidence            8  99999999999998766444579999999998765332    24566677776442211     1123577777777


Q ss_pred             heecccCC
Q 024842          255 MRELMFGR  262 (262)
Q Consensus       255 ~~~l~~G~  262 (262)
                      +++|++|+
T Consensus       201 l~~l~~g~  208 (283)
T 3bhy_A          201 TYILLSGA  208 (283)
T ss_dssp             HHHHHHSS
T ss_pred             HHHHHHCC
Confidence            77777664

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...

Probab=100.00  E-value=9.8e-34  Score=237.75  Aligned_cols=193  Identities=19%  Similarity=0.236  Sum_probs=155.2

Q ss_pred             ecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc-chHHHHHHHHHHHHhhh
Q 024842           23 INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ-NNEQLEMVREEIRVSSL  101 (262)
Q Consensus        23 ~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~-~~~~~~~~~~E~~~l~~  101 (262)
                      +..++|++.+.||+|+||.||+|++..+++                      .+|+|.+... .....+.+.+|+.+++.
T Consensus        30 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~----------------------~va~K~~~~~~~~~~~~~~~~E~~~l~~   87 (360)
T 3eqc_A           30 LKDDDFEKISELGAGNGGVVFKVSHKPSGL----------------------VMARKLIHLEIKPAIRNQIIRELQVLHE   87 (360)
T ss_dssp             CCGGGEEEEEEEEECSSCEEEEEEETTTCC----------------------EEEEEEEECCCCHHHHHHHHHHHGGGGG
T ss_pred             cccccceeeeeecCCCCeEEEEEEECCCCc----------------------EEEEEEeccccCHHHHHHHHHHHHHHHH
Confidence            347899999999999999999999886655                      5777776544 34445778999999999


Q ss_pred             CCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcC-CC
Q 024842          102 FSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSL-EP  180 (262)
Q Consensus       102 l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~-~~  180 (262)
                      ++||||+++++++.          .....+++|||+.+++|.+++.    ....+++..++.++.|++.||.|||+. + 
T Consensus        88 l~h~~iv~~~~~~~----------~~~~~~lv~e~~~~~~L~~~l~----~~~~~~~~~~~~i~~~i~~~l~~lh~~~~-  152 (360)
T 3eqc_A           88 CNSPYIVGFYGAFY----------SDGEISICMEHMDGGSLDQVLK----KAGRIPEQILGKVSIAVIKGLTYLREKHK-  152 (360)
T ss_dssp             CCCTTBCCEEEEEE----------ETTEEEEEECCCTTCBHHHHHH----HHSSCCHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             CCCCCEEEEeEEEE----------ECCEEEEEEECCCCCCHHHHHH----HcCCCCHHHHHHHHHHHHHHHHHHHHhCC-
Confidence            99999999999873          3567999999999999999886    334599999999999999999999985 8 


Q ss_pred             CeeecCCCCCcEEEecCCCCCCceEEeeccceeeccc---cCccCcccCCcccchhhhhhhhhhhhhcCcccchheehee
Q 024842          181 PYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQS---KFALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRE  257 (262)
Q Consensus       181 ~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~---~~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~  257 (262)
                       |+||||||+||+++.++    .++|+|||++.....   ....+++.|.+||.+....+     ....|+|++|+++|+
T Consensus       153 -i~H~dlkp~Nil~~~~~----~~kl~Dfg~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-----~~~~Di~slG~il~~  222 (360)
T 3eqc_A          153 -IMHRDVKPSNILVNSRG----EIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHY-----SVQSDIWSMGLSLVE  222 (360)
T ss_dssp             -CCCSCCSGGGEEECTTC----CEEECCCCCCHHHHHHC----CCCCTTCCHHHHTTCCC-----SHHHHHHHHHHHHHH
T ss_pred             -EEcCCccHHHEEECCCC----CEEEEECCCCcccccccccCCCCCCCeECHHHHcCCCC-----CchhhHHHHHHHHHH
Confidence             99999999999998776    699999999875432   22357778888876543221     123578888888888


Q ss_pred             cccCC
Q 024842          258 LMFGR  262 (262)
Q Consensus       258 l~~G~  262 (262)
                      |++|+
T Consensus       223 l~~g~  227 (360)
T 3eqc_A          223 MAVGR  227 (360)
T ss_dssp             HHHTS
T ss_pred             HHhCC
Confidence            88774

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=2.9e-34  Score=239.47  Aligned_cols=209  Identities=21%  Similarity=0.275  Sum_probs=156.0

Q ss_pred             CCCCCceeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc-----chHHH
Q 024842           15 VNGGGDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ-----NNEQL   89 (262)
Q Consensus        15 ~~~~~~~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~-----~~~~~   89 (262)
                      ...++.+.-..++|++.+.||+|+||.||+|.+..+++                      .+|+|.+...     .....
T Consensus        15 ~~q~~~~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~----------------------~vaiK~~~~~~~~~~~~~~~   72 (345)
T 3hko_A           15 YFQGGSLLELQKKYHLKGAIGQGSYGVVRVAIENQTRA----------------------IRAIKIMNKNKIRQINPKDV   72 (345)
T ss_dssp             CCCCBCHHHHHHHEEEEEEEEECSSCEEEEEEETTTCC----------------------EEEEEEEEHHHHHC---CHH
T ss_pred             cccCchhhhhhhheeecceeeecCCeEEEEEEECCCCc----------------------eEEEeehhhhhhcccCHHHH
Confidence            44555565557899999999999999999999877655                      5677755432     33445


Q ss_pred             HHHHHHHHHhhhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhh------------------
Q 024842           90 EMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQT------------------  151 (262)
Q Consensus        90 ~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~------------------  151 (262)
                      +.+.+|+.+++.++||||+++++++          ......+++|||+.+++|.+++.....                  
T Consensus        73 ~~~~~E~~~l~~l~hpniv~~~~~~----------~~~~~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~~~~~  142 (345)
T 3hko_A           73 ERIKTEVRLMKKLHHPNIARLYEVY----------EDEQYICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPC  142 (345)
T ss_dssp             HHHHHHHHHHHHCCCTTBCCEEEEE----------ECSSEEEEEEECCCSCBHHHHEEEEEETTTTEEEEEEECCCCCCS
T ss_pred             HHHHHHHHHHHhCCCCCcceeehhh----------ccCCeEEEEEeCCCCCcHHHHHHHhhccccccccccccccccccc
Confidence            7889999999999999999999988          346679999999999999988742110                  


Q ss_pred             ------------------cCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeeecCCCCCcEEEecCCCCCCceEEeecccee
Q 024842          152 ------------------KKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSAR  213 (262)
Q Consensus       152 ------------------~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~  213 (262)
                                        ....+++..++.++.|++.||.|||+.+  |+||||||+||+++.++.  ..+||+|||++.
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~--ivH~Dlkp~NIll~~~~~--~~~kl~Dfg~a~  218 (345)
T 3hko_A          143 PECNEEAINGSIHGFRESLDFVQREKLISNIMRQIFSALHYLHNQG--ICHRDIKPENFLFSTNKS--FEIKLVDFGLSK  218 (345)
T ss_dssp             HHHHHHHHHSCC--CEEECCHHHHHHHHHHHHHHHHHHHHHHHHTT--EECCCCCGGGEEESCSSS--CCEEECCCTTCE
T ss_pred             ccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHCC--ccccCCChhhEEEecCCC--ceEEEeeccccc
Confidence                              0222467889999999999999999999  999999999999975542  259999999998


Q ss_pred             ecccc---------CccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecccCC
Q 024842          214 PAQSK---------FALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMFGR  262 (262)
Q Consensus       214 ~~~~~---------~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~G~  262 (262)
                      .+...         ...+++.|.+||.+......   .....||||+|+++|+|++|+
T Consensus       219 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~---~~~~~DiwslG~il~el~~g~  273 (345)
T 3hko_A          219 EFYKLNNGEYYGMTTKAGTPYFVAPEVLNTTNES---YGPKCDAWSAGVLLHLLLMGA  273 (345)
T ss_dssp             EGGGTTCC--------CCCGGGCCHHHHTCSSSC---CCTHHHHHHHHHHHHHHHHSS
T ss_pred             cccccCccccccccccCCCccccCchhhccCCCC---CCcHHHHHHHHHHHHHHHHCC
Confidence            75431         23466677777755321111   112357888888888888774

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}

Probab=100.00  E-value=5e-33  Score=231.21  Aligned_cols=201  Identities=16%  Similarity=0.226  Sum_probs=148.2

Q ss_pred             ceeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHh
Q 024842           20 DVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVS   99 (262)
Q Consensus        20 ~~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l   99 (262)
                      ...+..++|++.+.||+|+||.||+|++.                        +..||+|++....... .....|+..+
T Consensus         7 ~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~------------------------~~~vavK~~~~~~~~~-~~~e~~~~~~   61 (336)
T 3g2f_A            7 EPSLDLDNLKLLELIGRGRYGAVYKGSLD------------------------ERPVAVKVFSFANRQN-FINEKNIYRV   61 (336)
T ss_dssp             --CCCTTSEEEEEEEEECSSEEEEEEEET------------------------TEEEEEEEEEGGGHHH-HHHHHHHHTS
T ss_pred             CCCcChHHhheeeecccCCCeEEEEEEEC------------------------CeEEEEEEeeccchhh-HHHHHHHHHH
Confidence            44566789999999999999999999763                        2368888776443322 2223444456


Q ss_pred             hhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcC-
Q 024842          100 SLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSL-  178 (262)
Q Consensus       100 ~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~-  178 (262)
                      ..++||||+++++.+...     ........+++|||+.+++|.+++.     ....++..++.++.|++.||.|||+. 
T Consensus        62 ~~~~h~~i~~~~~~~~~~-----~~~~~~~~~lv~e~~~~g~L~~~l~-----~~~~~~~~~~~i~~qi~~~L~~LH~~~  131 (336)
T 3g2f_A           62 PLMEHDNIARFIVGDERV-----TADGRMEYLLVMEYYPNGSLXKYLS-----LHTSDWVSSCRLAHSVTRGLAYLHTEL  131 (336)
T ss_dssp             TTCCCTTBCCEEEEEEEE-----CTTSCEEEEEEECCCTTCBHHHHHH-----HCCBCHHHHHHHHHHHHHHHHHHHCCB
T ss_pred             HhccCcchhhheeccccc-----ccCCCceEEEEEecCCCCcHHHHHh-----hcccchhHHHHHHHHHHHHHHHHHhhh
Confidence            668999999998643210     1133456789999999999999885     22368999999999999999999998 


Q ss_pred             --------CCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-------------ccCcccCCcccchhhhhh
Q 024842          179 --------EPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-------------ALGQRRYSCRNGLLSIVL  237 (262)
Q Consensus       179 --------~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-------------~~~~~~~~~~~d~~s~g~  237 (262)
                              +  |+||||||+|||++.++    .+||+|||++.......             ..++..|.+||.+.....
T Consensus       132 ~~~~~~~~~--ivH~Dikp~Nill~~~~----~~kL~DFG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~  205 (336)
T 3g2f_A          132 PRGDHYKPA--ISHRDLNSRNVLVKNDG----TCVISDFGLSMRLTGNRLVRPGEEDNAAISEVGTIRYMAPEVLEGAVN  205 (336)
T ss_dssp             CCGGGCBCC--EECSSCSGGGEEECTTS----CEEECCCTTCEECSSSSCC---------CCTTSCGGGCCHHHHTTCCC
T ss_pred             ccccccccc--eeecccccceEEEcCCC----cEEEeeccceeecccccccCccccccccccCCCccceeCchhhcCCcc
Confidence                    7  99999999999998776    69999999998765321             246778888886643110


Q ss_pred             h--hhhhhhcCcccchheeheecccC
Q 024842          238 H--LSELLSCGTVRVIQILMRELMFG  261 (262)
Q Consensus       238 ~--~~e~~~~~~v~~~g~~~~~l~~G  261 (262)
                      .  ........||||+|+++|||++|
T Consensus       206 ~~~~~~~~~~~DiwslG~il~ell~g  231 (336)
T 3g2f_A          206 LRDXESALKQVDMYALGLIYWEIFMR  231 (336)
T ss_dssp             GGGHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             cccccccccccchHHHHHHHHHHHhc
Confidence            0  01222346899999999998887

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}

Probab=100.00  E-value=4e-33  Score=225.84  Aligned_cols=191  Identities=21%  Similarity=0.283  Sum_probs=141.6

Q ss_pred             CceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc---hHHHHHHHHHHHHhhhC
Q 024842           26 NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN---NEQLEMVREEIRVSSLF  102 (262)
Q Consensus        26 ~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~---~~~~~~~~~E~~~l~~l  102 (262)
                      ++|++.+.||+|+||.||+|++..+++                      .+++|.+....   ....+.+.+|+.+++.+
T Consensus        11 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~----------------------~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l   68 (278)
T 3cok_A           11 EDFKVGNLLGKGSFAGVYRAESIHTGL----------------------EVAIKMIDKKAMYKAGMVQRVQNEVKIHCQL   68 (278)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCC----------------------EEEEEEEEHHHHHHTTCHHHHHHHHHHHTTB
T ss_pred             ccceeeeeecCCCceEEEEEEEccCCc----------------------eEEEEEeehhhhhhhhHHHHHHHHHHHHHhC
Confidence            589999999999999999999876554                      57777664332   12246788999999999


Q ss_pred             CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCe
Q 024842          103 SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPY  182 (262)
Q Consensus       103 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~i  182 (262)
                      +||||+++++++          ......+++||++.+++|.+++..   ....+++..++.++.|++.||.|||+.+  +
T Consensus        69 ~h~~i~~~~~~~----------~~~~~~~lv~e~~~~~~L~~~l~~---~~~~~~~~~~~~~~~qi~~~l~~lH~~~--i  133 (278)
T 3cok_A           69 KHPSILELYNYF----------EDSNYVYLVLEMCHNGEMNRYLKN---RVKPFSENEARHFMHQIITGMLYLHSHG--I  133 (278)
T ss_dssp             CCTTBCCEEEEE----------ECSSEEEEEEECCTTEEHHHHHHT---CSSCCCHHHHHHHHHHHHHHHHHHHHTT--E
T ss_pred             CCCCeEeEEEEE----------ccCCeEEEEEecCCCCcHHHHHhh---ccCCCCHHHHHHHHHHHHHHHHHHHHCC--e
Confidence            999999999987          335678999999999999998762   3356999999999999999999999999  9


Q ss_pred             eecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-----ccCcccCCcccchhhhhhhhhhhhhcCcccchheehee
Q 024842          183 AHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRE  257 (262)
Q Consensus       183 vH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~  257 (262)
                      +|+||||+||+++.++    .++|+|||++.......     ..+++.|.+||.+....     .....|+|++|+++++
T Consensus       134 ~H~dl~p~Nili~~~~----~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-----~~~~~Di~slG~il~~  204 (278)
T 3cok_A          134 LHRDLTLSNLLLTRNM----NIKIADFGLATQLKMPHEKHYTLCGTPNYISPEIATRSA-----HGLESDVWSLGCMFYT  204 (278)
T ss_dssp             ECSSCCGGGEEECTTC----CEEECCCTTCEECC---------------------------------CTHHHHHHHHHHH
T ss_pred             ecCCCCHHHEEEcCCC----CEEEEeecceeeccCCCCcceeccCCCCcCCcchhcCCC-----CCchhhHHHHHHHHHH
Confidence            9999999999998776    69999999998765322     34667777777553321     1224678888888888


Q ss_pred             cccCC
Q 024842          258 LMFGR  262 (262)
Q Consensus       258 l~~G~  262 (262)
                      |++|+
T Consensus       205 l~~g~  209 (278)
T 3cok_A          205 LLIGR  209 (278)
T ss_dssp             HHHSS
T ss_pred             HHhCC
Confidence            87774

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*

Probab=100.00  E-value=2.2e-33  Score=229.76  Aligned_cols=194  Identities=20%  Similarity=0.258  Sum_probs=149.0

Q ss_pred             cCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhh--
Q 024842           24 NENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSL--  101 (262)
Q Consensus        24 ~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~--  101 (262)
                      ..++|++.+.||+|+||.||+|++.  +                      ..||+|++.....   ..+..|.+++..  
T Consensus         6 ~~~~y~~~~~lg~G~~g~V~~~~~~--~----------------------~~vavK~~~~~~~---~~~~~e~~~~~~~~   58 (301)
T 3q4u_A            6 VARDITLLECVGKGRYGEVWRGSWQ--G----------------------ENVAVKIFSSRDE---KSWFRETELYNTVM   58 (301)
T ss_dssp             CGGGCEEEEEEEECSSEEEEEEEET--T----------------------EEEEEEEECGGGH---HHHHHHHHHHHHTC
T ss_pred             ccCcEEEEEeeccCCCcEEEEEEEC--C----------------------EEEEEEEeccccc---hhhHHHHHHHHHhh
Confidence            3679999999999999999999873  2                      3688887754432   334455555554  


Q ss_pred             CCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHH-----
Q 024842          102 FSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMH-----  176 (262)
Q Consensus       102 l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH-----  176 (262)
                      ++||||+++++.+..      ........+++|||+.+++|.+++.     ...+++..++.++.|++.||.|||     
T Consensus        59 l~h~niv~~~~~~~~------~~~~~~~~~lv~e~~~~g~L~~~l~-----~~~~~~~~~~~i~~~i~~~l~~lH~~~~~  127 (301)
T 3q4u_A           59 LRHENILGFIASDMT------SRHSSTQLWLITHYHEMGSLYDYLQ-----LTTLDTVSCLRIVLSIASGLAHLHIEIFG  127 (301)
T ss_dssp             CCCTTBCCEEEEEEE------EETTEEEEEEEECCCTTCBHHHHHT-----TCCBCHHHHHHHHHHHHHHHHHHHSCBCS
T ss_pred             ccCcCeeeEEEeecc------ccCCCceeEEehhhccCCCHHHHHh-----hcccCHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            799999999987632      1123456899999999999999884     345999999999999999999999     


Q ss_pred             ---cCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC---------ccCcccCCcccchhhhhhh-hhhhh
Q 024842          177 ---SLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF---------ALGQRRYSCRNGLLSIVLH-LSELL  243 (262)
Q Consensus       177 ---~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~---------~~~~~~~~~~~d~~s~g~~-~~e~~  243 (262)
                         +.+  |+||||||+|||++.++    .+||+|||++.......         ..++..|.+||.+...... .....
T Consensus       128 ~~~~~~--ivH~Dlkp~Nill~~~~----~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~  201 (301)
T 3q4u_A          128 TQGKPA--IAHRDLKSKNILVKKNG----QCCIADLGLAVMHSQSTNQLDVGNNPRVGTKRYMAPEVLDETIQVDCFDSY  201 (301)
T ss_dssp             TTCBCE--EECSCCCGGGEEECTTS----CEEECCCTTCEEEETTTTEEECCCCCCCCCGGGCCHHHHTTCCCTTCHHHH
T ss_pred             ccCCCC--eecCCCChHhEEEcCCC----CEEEeeCCCeeecccccccccccccccccccceeChhhhcCcCCCCcccCC
Confidence               878  99999999999998776    69999999997654322         2577788888866443111 01222


Q ss_pred             hcCcccchheeheecccC
Q 024842          244 SCGTVRVIQILMRELMFG  261 (262)
Q Consensus       244 ~~~~v~~~g~~~~~l~~G  261 (262)
                      ...||||+|+++|||++|
T Consensus       202 ~~~DvwslG~il~el~tg  219 (301)
T 3q4u_A          202 KRVDIWAFGLVLWEVARR  219 (301)
T ss_dssp             HHHHHHHHHHHHHHHHTT
T ss_pred             chhhHHHHHHHHHHHHhh
Confidence            347899999999999887

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A

Probab=100.00  E-value=2.1e-33  Score=230.39  Aligned_cols=194  Identities=23%  Similarity=0.347  Sum_probs=148.5

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCCC
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSH  104 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~h  104 (262)
                      .++|++.+.||+|+||.||+|++..+++                      .+++|.+........+.+.+|+.+++.++|
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~----------------------~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h   65 (304)
T 2jam_A            8 RKTFIFMEVLGSGAFSEVFLVKQRLTGK----------------------LFALKCIKKSPAFRDSSLENEIAVLKKIKH   65 (304)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTCC----------------------EEEEEEEECC------HHHHHHHHHHHCCC
T ss_pred             hccceeeeeccCCCCceEEEEEECCCCC----------------------EEEEEEEecccccchHHHHHHHHHHHhCCC
Confidence            4689999999999999999999876654                      678887765544445678899999999999


Q ss_pred             CCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeee
Q 024842          105 RNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAH  184 (262)
Q Consensus       105 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH  184 (262)
                      |||+++++++          ......+++||++.+++|.+++.    ....+++..++.++.|++.||.|||+.+  ++|
T Consensus        66 ~~i~~~~~~~----------~~~~~~~lv~e~~~~~~L~~~l~----~~~~~~~~~~~~~~~qi~~~l~~lH~~~--i~H  129 (304)
T 2jam_A           66 ENIVTLEDIY----------ESTTHYYLVMQLVSGGELFDRIL----ERGVYTEKDASLVIQQVLSAVKYLHENG--IVH  129 (304)
T ss_dssp             TTBCCEEEEE----------ECSSEEEEEECCCCSCBHHHHHH----HHSCCCHHHHHHHHHHHHHHHHHHHHTT--CCC
T ss_pred             CCeeehhhhc----------ccCCEEEEEEEcCCCccHHHHHH----HcCCCCHHHHHHHHHHHHHHHHHHHHCC--ccc
Confidence            9999999987          33567899999999999999876    3345999999999999999999999998  999


Q ss_pred             cCCCCCcEEEecCCCCCCceEEeeccceeeccccC---ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecccC
Q 024842          185 NDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF---ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMFG  261 (262)
Q Consensus       185 ~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~---~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~G  261 (262)
                      +||||+||++..++ ....++|+|||++.......   ..+++.|.+||.+....+     ....|+|++|+++++|++|
T Consensus       130 ~dikp~NIl~~~~~-~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~-----~~~~Di~slG~il~~l~~g  203 (304)
T 2jam_A          130 RDLKPENLLYLTPE-ENSKIMITDFGLSKMEQNGIMSTACGTPGYVAPEVLAQKPY-----SKAVDCWSIGVITYILLCG  203 (304)
T ss_dssp             CSCCGGGCEESSSS-TTCCEEBCSCSTTCCCCCBTTHHHHSCCCBCCTTTBSSCSC-----CHHHHHHHHHHHHHHHHHS
T ss_pred             cCCCHHHEEEecCC-CCCCEEEccCCcceecCCCccccccCCCCccChHHhccCCC-----CchhhHHHHHHHHHHHHHC
Confidence            99999999994321 11269999999987654332   236677777775532211     1235677777777777766


Q ss_pred             C
Q 024842          262 R  262 (262)
Q Consensus       262 ~  262 (262)
                      +
T Consensus       204 ~  204 (304)
T 2jam_A          204 Y  204 (304)
T ss_dssp             S
T ss_pred             C
Confidence            4

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=3.7e-33  Score=232.75  Aligned_cols=203  Identities=22%  Similarity=0.291  Sum_probs=150.4

Q ss_pred             ceeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc-chHHHHHHHHHHHH
Q 024842           20 DVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ-NNEQLEMVREEIRV   98 (262)
Q Consensus        20 ~~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~-~~~~~~~~~~E~~~   98 (262)
                      ...+..++|++.+.||+|+||.||+|++....+.                 ..+..||+|.+... .....+.+.+|+.+
T Consensus        39 ~~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~-----------------~~~~~vavK~~~~~~~~~~~~~~~~E~~~  101 (344)
T 1rjb_A           39 KWEFPRENLEFGKVLGSGAFGKVMNATAYGISKT-----------------GVSIQVAVKMLKEKADSSEREALMSELKM  101 (344)
T ss_dssp             GGBCCGGGEEEEEEEEECSSEEEEEEEEESCSSS-----------------SCEEEEEEEEECC------CHHHHHHHHH
T ss_pred             CcccCHHHceeeeeecCCCCceeEEeeeeccccC-----------------CcceEEEEEecccccCHHHHHHHHHHHHH
Confidence            4456678999999999999999999997543221                 12346888887644 23345678899999


Q ss_pred             hhhC-CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhc-------------------CCCCCH
Q 024842           99 SSLF-SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTK-------------------KEFFST  158 (262)
Q Consensus        99 l~~l-~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~-------------------~~~~~~  158 (262)
                      ++.+ +||||+++++++          ...+..+++||++.+++|.+++......                   ...+++
T Consensus       102 l~~l~~hp~iv~~~~~~----------~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  171 (344)
T 1rjb_A          102 MTQLGSHENIVNLLGAC----------TLSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTF  171 (344)
T ss_dssp             HHHHCCCTTBCCEEEEE----------CSSSSCEEEEECCTTCBHHHHHHTTTTCC---------------------CCH
T ss_pred             HHhhcCCCCeeeEEEEE----------eeCCccEEEEecCCCCcHHHHHhhccccccccccchhhhcccccccccccCCH
Confidence            9999 899999999987          3456799999999999999998643211                   134799


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-------ccCcccCCcccc
Q 024842          159 SDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-------ALGQRRYSCRNG  231 (262)
Q Consensus       159 ~~~~~i~~ql~~~l~~lH~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-------~~~~~~~~~~~d  231 (262)
                      ..++.++.|++.||.|||+.+  |+||||||+||+++.++    .+||+|||++.......       ..++..|.+||.
T Consensus       172 ~~~~~i~~qi~~aL~~LH~~~--ivH~Dikp~NIll~~~~----~~kL~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~  245 (344)
T 1rjb_A          172 EDLLCFAYQVAKGMEFLEFKS--CVHRDLAARNVLVTHGK----VVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPES  245 (344)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTT--EEETTCSGGGEEEETTT----EEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCC--cccCCCChhhEEEcCCC----cEEeCCCccCcccccCccceeccCccCccCccCHHH
Confidence            999999999999999999998  99999999999998776    79999999998664332       123445777764


Q ss_pred             hhhhhhhhhhhhhcCcccchheeheeccc
Q 024842          232 LLSIVLHLSELLSCGTVRVIQILMRELMF  260 (262)
Q Consensus       232 ~~s~g~~~~e~~~~~~v~~~g~~~~~l~~  260 (262)
                      +..-.     .....|+|++|+++++|++
T Consensus       246 ~~~~~-----~~~~~Di~slG~il~el~t  269 (344)
T 1rjb_A          246 LFEGI-----YTIKSDVWSYGILLWEIFS  269 (344)
T ss_dssp             HHHCC-----CCHHHHHHHHHHHHHHHTT
T ss_pred             hccCC-----CChhHhHHHHHHHHHHHHc
Confidence            42211     1123466666666666665

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...

Probab=100.00  E-value=5.2e-33  Score=233.72  Aligned_cols=200  Identities=23%  Similarity=0.317  Sum_probs=153.5

Q ss_pred             ceeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc-chHHHHHHHHHHHH
Q 024842           20 DVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ-NNEQLEMVREEIRV   98 (262)
Q Consensus        20 ~~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~-~~~~~~~~~~E~~~   98 (262)
                      +++-.+++|++.+.||+|+||.||+|.+..+++                      .||+|++... .....+.+.+|+.+
T Consensus        21 ~~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~----------------------~vaiK~~~~~~~~~~~~~~~~E~~~   78 (364)
T 3qyz_A           21 QVFDVGPRYTNLSYIGEGAYGMVCSAYDNLNKV----------------------RVAIKKISPFEHQTYCQRTLREIKI   78 (364)
T ss_dssp             CBCCCTTTEEEEEEEEECSSEEEEEEEETTTTE----------------------EEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             EeccccccEEEEEEeecCCCeEEEEEEECCCCe----------------------EEEEEEeccccCcHHHHHHHHHHHH
Confidence            344446799999999999999999999887655                      6777776543 34445778899999


Q ss_pred             hhhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcC
Q 024842           99 SSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSL  178 (262)
Q Consensus        99 l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~  178 (262)
                      ++.++||||+++++++...     ........+++|+++. ++|.+++.     ...+++..++.++.|++.||.|||++
T Consensus        79 l~~l~h~niv~~~~~~~~~-----~~~~~~~~~iv~e~~~-~~L~~~l~-----~~~~~~~~~~~i~~qi~~aL~~LH~~  147 (364)
T 3qyz_A           79 LLRFRHENIIGINDIIRAP-----TIEQMKDVYIVQDLME-TDLYKLLK-----TQHLSNDHICYFLYQILRGLKYIHSA  147 (364)
T ss_dssp             HHHCCCTTBCCCCEEECCS-----STTTCCCEEEEEECCS-EEHHHHHH-----HCCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHhcCCCCCccceeEEecC-----CccccceEEEEEcccC-cCHHHHHH-----hCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            9999999999999887310     0122356899999877 58888774     23499999999999999999999999


Q ss_pred             CCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC--------ccCcccCCcccchhhhhhhhhhhhhcCcccc
Q 024842          179 EPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF--------ALGQRRYSCRNGLLSIVLHLSELLSCGTVRV  250 (262)
Q Consensus       179 ~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~--------~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~  250 (262)
                      +  |+||||||+||+++.++    .+||+|||++.......        ..+++.|.+||.+..-..    .....|+||
T Consensus       148 ~--ivH~Dikp~NIl~~~~~----~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~----~~~~~Diws  217 (364)
T 3qyz_A          148 N--VLHRDLKPSNLLLNTTC----DLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKG----YTKSIDIWS  217 (364)
T ss_dssp             T--EECCCCCGGGEEECTTC----CEEECCCTTCEECCGGGCBCCTTCCCCSCGGGCCHHHHHTBCS----CSTHHHHHH
T ss_pred             C--eecCCCChHhEEECCCC----CEEEEeCcceEecCCCCCccccccccccccCCCCCHHhcCCCC----CCcchhHHH
Confidence            9  99999999999998776    69999999998765332        246667777775432210    112357888


Q ss_pred             hheeheecccCC
Q 024842          251 IQILMRELMFGR  262 (262)
Q Consensus       251 ~g~~~~~l~~G~  262 (262)
                      +|+++|+|++|+
T Consensus       218 lG~il~ell~g~  229 (364)
T 3qyz_A          218 VGCILAEMLSNR  229 (364)
T ss_dssp             HHHHHHHHHHSS
T ss_pred             HHHHHHHHHHCC
Confidence            888888888774

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A

Probab=100.00  E-value=2e-33  Score=228.83  Aligned_cols=200  Identities=18%  Similarity=0.216  Sum_probs=145.0

Q ss_pred             ecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc--hHHHHHHHHHHHHhh
Q 024842           23 INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN--NEQLEMVREEIRVSS  100 (262)
Q Consensus        23 ~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~--~~~~~~~~~E~~~l~  100 (262)
                      +..++|++.+.||+|+||.||+|++..+++                      .||+|++....  ....+.+.++...++
T Consensus         4 i~~~~y~~~~~lg~G~~g~V~~~~~~~~~~----------------------~vavK~~~~~~~~~~~~~~~~~~~~~~~   61 (290)
T 3fme_A            4 VKADDLEPIMELGRGAYGVVEKMRHVPSGQ----------------------IMAVKRIRATVNSQEQKRLLMDLDISMR   61 (290)
T ss_dssp             CCGGGEEEEEEEEECSSEEEEEEEETTTTE----------------------EEEEEEEC---CHHHHHHHHHHHHHHHT
T ss_pred             ccHHhhhhHHhcCCCCCeEEEEEEecCCCe----------------------EEEEEEeecccCcHHHHHHHHHHHHHHH
Confidence            456899999999999999999999876655                      67888765442  222334445555688


Q ss_pred             hCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcC-C
Q 024842          101 LFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSL-E  179 (262)
Q Consensus       101 ~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~-~  179 (262)
                      .++||||+++++++.          .....+++||++. ++|.+++.........+++..++.++.|++.||.|||++ +
T Consensus        62 ~~~h~~iv~~~~~~~----------~~~~~~lv~e~~~-~~l~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~~  130 (290)
T 3fme_A           62 TVDCPFTVTFYGALF----------REGDVWICMELMD-TSLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLHSKLS  130 (290)
T ss_dssp             TCCCTTBCCEEEEEE----------CSSSEEEEEECCS-EEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             hCCCCeEEEEeeeee----------ccCCEEEEEehhc-cchHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhcCC
Confidence            899999999999873          3567899999987 588888776655667799999999999999999999997 8


Q ss_pred             CCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC----ccCcccCCcccchhhhhhhhhhhhhcCcccchheeh
Q 024842          180 PPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILM  255 (262)
Q Consensus       180 ~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~  255 (262)
                        ++||||||+||+++.++    .+||+|||++.......    ..+++.|.+||.+... ..........|+|++|+++
T Consensus       131 --i~H~dlkp~Nil~~~~~----~~kl~Dfg~~~~~~~~~~~~~~~~t~~y~aPE~~~~~-~~~~~~~~~~Di~slG~il  203 (290)
T 3fme_A          131 --VIHRDVKPSNVLINALG----QVKMCDFGISGYLVDDVAKDIDAGCKPYMAPERINPE-LNQKGYSVKSDIWSLGITM  203 (290)
T ss_dssp             --CCCCCCSGGGCEECTTC----CEEBCCC---------------CCCCCCSCHHHHSCC-TTC--CCHHHHHHHHHHHH
T ss_pred             --eecCCCCHHHEEECCCC----CEEEeecCCcccccccccccccCCCccccChhhcChh-hcCcCCCcHHHHHHHHHHH
Confidence              99999999999998766    69999999998654332    2567778887764210 0000111235888888888


Q ss_pred             eecccCC
Q 024842          256 RELMFGR  262 (262)
Q Consensus       256 ~~l~~G~  262 (262)
                      ++|++|+
T Consensus       204 ~~l~~g~  210 (290)
T 3fme_A          204 IELAILR  210 (290)
T ss_dssp             HHHHHTS
T ss_pred             HHHHHCC
Confidence            8888774

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*

Probab=100.00  E-value=5.1e-33  Score=228.72  Aligned_cols=195  Identities=25%  Similarity=0.335  Sum_probs=144.7

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhc---cchHHHHHHHHHHHHhhh
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLI---QNNEQLEMVREEIRVSSL  101 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~---~~~~~~~~~~~E~~~l~~  101 (262)
                      .++|++.+.||+|+||.||+|.+..+++                      .+++|++..   ......+.+.+|+.+++.
T Consensus        31 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~----------------------~vavK~~~~~~~~~~~~~~~~~~E~~~l~~   88 (310)
T 2wqm_A           31 LANFRIEKKIGRGQFSEVYRAACLLDGV----------------------PVALKKVQIFDLMDAKARADCIKEIDLLKQ   88 (310)
T ss_dssp             GGGEEEEEEEECC--CEEEEEEETTTCC----------------------EEEEEEECTTSSCCHHHHHHHHHHHHHHHT
T ss_pred             ccceEEEEeecCCCCceEEEEEEcCCCc----------------------eEEEEeeehhhccCHHHHHHHHHHHHHHHh
Confidence            4689999999999999999999876654                      677776653   234556778899999999


Q ss_pred             CCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCC
Q 024842          102 FSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPP  181 (262)
Q Consensus       102 l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~  181 (262)
                      ++||||+++++.+.          .....+++||++.+++|.+++.........+++..++.++.|++.||.|||+.+  
T Consensus        89 l~h~~i~~~~~~~~----------~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~--  156 (310)
T 2wqm_A           89 LNHPNVIKYYASFI----------EDNELNIVLELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALEHMHSRR--  156 (310)
T ss_dssp             CCCTTBCCEEEEEE----------ETTEEEEEEECCCSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTT--
T ss_pred             CCCCCEeeEEEEEE----------cCCcEEEEEecCCCCCHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHhhCC--
Confidence            99999999999873          356799999999999999998866656677999999999999999999999999  


Q ss_pred             eeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-----ccCcccCCcccchhhhhhhhhhhhhcCcccchheehe
Q 024842          182 YAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMR  256 (262)
Q Consensus       182 ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~  256 (262)
                      ++|+||||+||+++.++    .++|+|||++.......     ..++..|.+||.+....+     ....|+|++|++++
T Consensus       157 i~H~dl~p~NIl~~~~~----~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~-----~~~~Dv~slG~il~  227 (310)
T 2wqm_A          157 VMHRDIKPANVFITATG----VVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPERIHENGY-----NFKSDIWSLGCLLY  227 (310)
T ss_dssp             CCCCCCCGGGEEECTTS----CEEECCC------------------CCSSCCHHHHTTCCC-----CHHHHHHHHHHHHH
T ss_pred             eeCCCCcHHHEEEcCCC----CEEEEeccceeeecCCCccccccCCCeeEeChHHhCCCCC-----CchhhHHHHHHHHH
Confidence            99999999999998766    69999999988654332     245666777764432111     11246666666666


Q ss_pred             ecccCC
Q 024842          257 ELMFGR  262 (262)
Q Consensus       257 ~l~~G~  262 (262)
                      +|++|+
T Consensus       228 ~l~~g~  233 (310)
T 2wqm_A          228 EMAALQ  233 (310)
T ss_dssp             HHHHSS
T ss_pred             HHHhCC
Confidence            666653

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}

Probab=100.00  E-value=6.6e-33  Score=228.07  Aligned_cols=192  Identities=21%  Similarity=0.311  Sum_probs=148.5

Q ss_pred             cCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc---chHHHHHHHHHHHHhh
Q 024842           24 NENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ---NNEQLEMVREEIRVSS  100 (262)
Q Consensus        24 ~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~---~~~~~~~~~~E~~~l~  100 (262)
                      ..++|++.+.||+|+||.||+|++..+++                      .|++|.+...   .....+.+.+|+.+++
T Consensus        32 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~----------------------~vaiK~~~~~~~~~~~~~~~~~~e~~~l~   89 (309)
T 2h34_A           32 QFGPYRLRRLVGRGGMGDVYEAEDTVRER----------------------IVALKLMSETLSSDPVFRTRMQREARTAG   89 (309)
T ss_dssp             --CCEEEEEEEEECSSSEEEEEEETTTTE----------------------EEEEEECGGGGGGSHHHHHHHHHHHHHHT
T ss_pred             EeccEEEEEEEcCCCCeeEEEEEEcCCCe----------------------EEEEEecCcccccCHHHHHHHHHHHHHHh
Confidence            35789999999999999999999876654                      5777776543   3344577889999999


Q ss_pred             hCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCC
Q 024842          101 LFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEP  180 (262)
Q Consensus       101 ~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~  180 (262)
                      .++||||+++++++.          .....+++||++.+++|.+++.    ....+++..++.++.|++.||.|||+.+ 
T Consensus        90 ~l~hp~iv~~~~~~~----------~~~~~~lv~e~~~~~~L~~~l~----~~~~~~~~~~~~i~~qi~~~l~~lH~~~-  154 (309)
T 2h34_A           90 RLQEPHVVPIHDFGE----------IDGQLYVDMRLINGVDLAAMLR----RQGPLAPPRAVAIVRQIGSALDAAHAAG-  154 (309)
T ss_dssp             TCCCTTBCCEEEEEE----------ETTEEEEEEECCCCEEHHHHHH----HHCSCCHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred             hcCCCCeeEEEEEEe----------eCCeEEEEEEecCCCCHHHHHH----hcCCCCHHHHHHHHHHHHHHHHHHHHCc-
Confidence            999999999999873          3567899999999999999886    3355999999999999999999999999 


Q ss_pred             CeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC------ccCcccCCcccchhhhhhhhhhhhhcCcccchhee
Q 024842          181 PYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF------ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQIL  254 (262)
Q Consensus       181 ~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~------~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~  254 (262)
                       ++|+||||+||+++.++    .++|+|||++.......      ..++..|.+||.+....     .....|+|++|++
T Consensus       155 -i~H~dlkp~NIl~~~~~----~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-----~~~~~Di~slG~i  224 (309)
T 2h34_A          155 -ATHRDVKPENILVSADD----FAYLVDFGIASATTDEKLTQLGNTVGTLYYMAPERFSESH-----ATYRADIYALTCV  224 (309)
T ss_dssp             -CCCSCCCGGGEEECTTS----CEEECSCCC----------------CCGGGCCGGGTCC---------CCCHHHHHHHH
T ss_pred             -CCcCCCChHHEEEcCCC----CEEEecCccCccccccccccccccCCCcCccCHHHHcCCC-----CCchHhHHHHHHH
Confidence             99999999999998776    69999999987654332      24667788887553321     1224678888888


Q ss_pred             heecccCC
Q 024842          255 MRELMFGR  262 (262)
Q Consensus       255 ~~~l~~G~  262 (262)
                      +|+|++|+
T Consensus       225 l~~l~~g~  232 (309)
T 2h34_A          225 LYECLTGS  232 (309)
T ss_dssp             HHHHHHSS
T ss_pred             HHHHHHCC
Confidence            88887774

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*

Probab=100.00  E-value=5.8e-33  Score=226.93  Aligned_cols=195  Identities=18%  Similarity=0.243  Sum_probs=152.2

Q ss_pred             ecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhC
Q 024842           23 INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLF  102 (262)
Q Consensus        23 ~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l  102 (262)
                      +..++|++.+.||+|+||.||+|.+..+++                      .||+|.+....  ..+.+.+|+.+++.+
T Consensus         7 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~----------------------~vavK~~~~~~--~~~~~~~e~~~~~~l   62 (298)
T 1csn_A            7 VVGVHYKVGRRIGEGSFGVIFEGTNLLNNQ----------------------QVAIKFEPRRS--DAPQLRDEYRTYKLL   62 (298)
T ss_dssp             EETTTEEEEEEEEECSSCEEEEEEETTTTE----------------------EEEEEEEECCT--TSCCHHHHHHHHHHT
T ss_pred             ccccceEEEEEEeecCCEEEEEEEECCCCc----------------------EEEEEEeccCC--ccHHHHHHHHHHHHH
Confidence            347899999999999999999999876655                      57777654332  224567889999998


Q ss_pred             -CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCC
Q 024842          103 -SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPP  181 (262)
Q Consensus       103 -~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~  181 (262)
                       +|+|++++++++          ......+++||++ +++|.+++..   ....+++..++.++.|++.||.|||+++  
T Consensus        63 ~~~~~i~~~~~~~----------~~~~~~~lv~e~~-~~~L~~~l~~---~~~~~~~~~~~~i~~qi~~~l~~lH~~~--  126 (298)
T 1csn_A           63 AGCTGIPNVYYFG----------QEGLHNVLVIDLL-GPSLEDLLDL---CGRKFSVKTVAMAAKQMLARVQSIHEKS--  126 (298)
T ss_dssp             TTCTTCCCEEEEE----------EETTEEEEEEECC-CCBHHHHHHH---TTTCCCHHHHHHHHHHHHHHHHHHHTTT--
T ss_pred             hcCCCCCeEEeec----------CCCceeEEEEEec-CCCHHHHHHH---hccCCCHHHHHHHHHHHHHHHHHHHhCC--
Confidence             799999999876          3466789999998 9999998863   2345999999999999999999999998  


Q ss_pred             eeecCCCCCcEEEecCCC-CCCceEEeeccceeeccccC------------ccCcccCCcccchhhhhhhhhhhhhcCcc
Q 024842          182 YAHNDVKPGNILITCRKG-QPPLAILMDFGSARPAQSKF------------ALGQRRYSCRNGLLSIVLHLSELLSCGTV  248 (262)
Q Consensus       182 ivH~dikp~Nill~~~~~-~~~~~kl~Dfg~a~~~~~~~------------~~~~~~~~~~~d~~s~g~~~~e~~~~~~v  248 (262)
                      |+||||||+||+++.++. ....+||+|||++.......            ..++..|.+||.+....     .....||
T Consensus       127 ivH~Dlkp~NIl~~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-----~~~~~Di  201 (298)
T 1csn_A          127 LVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTKQHIPYREKKNLSGTARYMSINTHLGRE-----QSRRDDL  201 (298)
T ss_dssp             EECCCCCGGGEEECCSSSTTTTCEEECCCTTCEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCC-----CCHHHHH
T ss_pred             EecCCCCHHHEEeccCCCCCCCeEEEEECccccccccccccccccccCccCCCCCcccCCchhhcCCC-----CChHHHH
Confidence            999999999999987652 33459999999998765432            24667788877543322     1223578


Q ss_pred             cchheeheecccCC
Q 024842          249 RVIQILMRELMFGR  262 (262)
Q Consensus       249 ~~~g~~~~~l~~G~  262 (262)
                      ||+|+++|+|++|+
T Consensus       202 ~slG~il~el~~g~  215 (298)
T 1csn_A          202 EALGHVFMYFLRGS  215 (298)
T ss_dssp             HHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHcCC
Confidence            88888888887774

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*

Probab=100.00  E-value=2.1e-33  Score=227.51  Aligned_cols=199  Identities=18%  Similarity=0.275  Sum_probs=154.8

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc--chHHHHHHHHHHHHhhhC
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ--NNEQLEMVREEIRVSSLF  102 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~--~~~~~~~~~~E~~~l~~l  102 (262)
                      .++|++.+.||+|+||.||+|++..+++                      .+++|.+...  .....+.+.+|+.+++.+
T Consensus         5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~----------------------~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l   62 (279)
T 2w5a_A            5 AEDYEVLYTIGTGSYGRCQKIRRKSDGK----------------------ILVWKELDYGSMTEAEKQMLVSEVNLLREL   62 (279)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEETTTCC----------------------EEEEEEEECTTCCHHHHHHHHHHHHHHHHC
T ss_pred             hhheeeehhccCCCCcEEEEEEECCCCc----------------------EEEEEEEEcccCCHHHHHHHHHHHHHHHhc
Confidence            4689999999999999999999876654                      6777776543  344567789999999999


Q ss_pred             CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCC---
Q 024842          103 SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLE---  179 (262)
Q Consensus       103 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~---  179 (262)
                      +||||+++++++..        ......+++||++.+++|.+++.........+++..++.++.|++.||.|||+.+   
T Consensus        63 ~h~~i~~~~~~~~~--------~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~  134 (279)
T 2w5a_A           63 KHPNIVRYYDRIID--------RTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGG  134 (279)
T ss_dssp             CCTTBCCEEEEEEE--------GGGTEEEEEEECCTTEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred             CCCCCCeEEEEEec--------CCCceEEEEEeCCCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHhcccCCC
Confidence            99999999987631        2356789999999999999998766555566999999999999999999999865   


Q ss_pred             CCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-----ccCcccCCcccchhhhhhhhhhhhhcCcccchhee
Q 024842          180 PPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQIL  254 (262)
Q Consensus       180 ~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~  254 (262)
                      .+++|+||||+||+++.++    .+||+|||++.......     ..++..|.+||.+....     .....|+|++|++
T Consensus       135 ~~ivH~dl~p~NIl~~~~~----~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-----~~~~~Di~slG~i  205 (279)
T 2w5a_A          135 HTVLHRDLKPANVFLDGKQ----NVKLGDFGLARILNHDTSFAKTFVGTPYYMSPEQMNRMS-----YNEKSDIWSLGCL  205 (279)
T ss_dssp             ---CCCCCSGGGEEECSSS----CEEECCCCHHHHC---CHHHHHHHSCCTTCCHHHHHCC------CCHHHHHHHHHHH
T ss_pred             CeeEEeccchhhEEEcCCC----CEEEecCchheeeccccccccccCCCccccChHHhccCC-----CCchhhHHHHHHH
Confidence            2499999999999998776    69999999997665432     24667788887553321     1123578888888


Q ss_pred             heecccCC
Q 024842          255 MRELMFGR  262 (262)
Q Consensus       255 ~~~l~~G~  262 (262)
                      +|+|++|+
T Consensus       206 l~~l~~g~  213 (279)
T 2w5a_A          206 LYELCALM  213 (279)
T ss_dssp             HHHHHHSS
T ss_pred             HHHHHHCC
Confidence            88877764

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...

Probab=100.00  E-value=1.1e-32  Score=229.08  Aligned_cols=206  Identities=19%  Similarity=0.293  Sum_probs=154.9

Q ss_pred             CceeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc-chHHHHHHHHHHH
Q 024842           19 GDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ-NNEQLEMVREEIR   97 (262)
Q Consensus        19 ~~~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~-~~~~~~~~~~E~~   97 (262)
                      ....+..++|++.+.||+|+||.||+|++....+.               ....+..||+|.+... .....+.+.+|+.
T Consensus        28 ~~~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~---------------~~~~~~~vavK~~~~~~~~~~~~~~~~E~~   92 (334)
T 2pvf_A           28 PKWEFPRDKLTLGKPLGEGAFGQVVMAEAVGIDKD---------------KPKEAVTVAVKMLKDDATEKDLSDLVSEME   92 (334)
T ss_dssp             TTTBCCGGGEEEEEEEEECSSCEEEEEEETTCSTT---------------CC---CEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred             ccccCCHhHeEEeeEEeecCceeEEEeEecccccc---------------ccccceEEEEeeeccCCcHHHHHHHHHHHH
Confidence            34567789999999999999999999998643221               0113457888887654 3444677889999


Q ss_pred             HhhhC-CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhh------------cCCCCCHHHHHHH
Q 024842           98 VSSLF-SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQT------------KKEFFSTSDVLQI  164 (262)
Q Consensus        98 ~l~~l-~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~------------~~~~~~~~~~~~i  164 (262)
                      +++.+ +||||+++++++          ......+++||++.+++|.+++.....            ....+++..++.+
T Consensus        93 ~l~~l~~hp~iv~~~~~~----------~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  162 (334)
T 2pvf_A           93 MMKMIGKHKNIINLLGAC----------TQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSC  162 (334)
T ss_dssp             HHHHHCCCTTBCCEEEEE----------CSSSCCEEEEECCTTCBHHHHHHTTSCTTCCSCC--------CCCHHHHHHH
T ss_pred             HHHHhhcCCCEeeEEEEE----------ccCCceEEEEECCCCCcHHHHHHHhccccccccccccccccccCCHHHHHHH
Confidence            99999 899999999987          345678999999999999999874321            1234899999999


Q ss_pred             HHHHHHHHHHHHcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-------ccCcccCCcccchhhhhh
Q 024842          165 FYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-------ALGQRRYSCRNGLLSIVL  237 (262)
Q Consensus       165 ~~ql~~~l~~lH~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-------~~~~~~~~~~~d~~s~g~  237 (262)
                      +.|++.||.|||+.+  ++||||||+||+++.++    .+||+|||++.......       ..++..|.+||.+..-. 
T Consensus       163 ~~qi~~aL~~LH~~~--ivH~Dlkp~NIll~~~~----~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-  235 (334)
T 2pvf_A          163 TYQLARGMEYLASQK--CIHRDLAARNVLVTENN----VMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRV-  235 (334)
T ss_dssp             HHHHHHHHHHHHHTT--EECSCCSGGGEEECTTC----CEEECCCTTCEECTTTSSEECCSCCCCCGGGCCHHHHHHCE-
T ss_pred             HHHHHHHHHHHHhCC--eeCCCCccceEEEcCCC----CEEEccccccccccccccccccCCCCcccceeChHHhcCCC-
Confidence            999999999999999  99999999999998776    69999999998765432       23345577776443211 


Q ss_pred             hhhhhhhcCcccchheeheeccc
Q 024842          238 HLSELLSCGTVRVIQILMRELMF  260 (262)
Q Consensus       238 ~~~e~~~~~~v~~~g~~~~~l~~  260 (262)
                          .....|+|++|+++|+|++
T Consensus       236 ----~~~~~Di~slG~il~ellt  254 (334)
T 2pvf_A          236 ----YTHQSDVWSFGVLMWEIFT  254 (334)
T ss_dssp             ----ECHHHHHHHHHHHHHHHHT
T ss_pred             ----cChHHHHHHHHHHHHHHHh
Confidence                1123567777777777666

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...

Probab=100.00  E-value=5.2e-33  Score=225.93  Aligned_cols=193  Identities=22%  Similarity=0.304  Sum_probs=153.2

Q ss_pred             ecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc---hHHHHHHHHHHHHh
Q 024842           23 INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN---NEQLEMVREEIRVS   99 (262)
Q Consensus        23 ~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~---~~~~~~~~~E~~~l   99 (262)
                      +..++|++.+.||+|+||.||+|++..+++                      .+++|.+....   ....+.+.+|+.++
T Consensus        11 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~----------------------~vaiK~~~~~~~~~~~~~~~~~~e~~~l   68 (284)
T 2vgo_A           11 FTIDDFDIGRPLGKGKFGNVYLAREKQNKF----------------------IMALKVLFKSQLEKEGVEHQLRREIEIQ   68 (284)
T ss_dssp             CCGGGEEEEEEEEECSSEEEEEEEETTTTE----------------------EEEEEEEEHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhhhhceeeheecCCCCeEEEEEEEcCCCc----------------------EEEEEEEcccccchHHHHHHHHHHHHHH
Confidence            446799999999999999999999876544                      57777664332   22246788999999


Q ss_pred             hhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCC
Q 024842          100 SLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLE  179 (262)
Q Consensus       100 ~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~  179 (262)
                      +.++||||+++++++          ......+++||++.+++|.+++.    ....+++..++.++.|++.||.|||+++
T Consensus        69 ~~l~h~~i~~~~~~~----------~~~~~~~lv~e~~~~~~L~~~l~----~~~~~~~~~~~~~~~qi~~~l~~lH~~~  134 (284)
T 2vgo_A           69 SHLRHPNILRMYNYF----------HDRKRIYLMLEFAPRGELYKELQ----KHGRFDEQRSATFMEELADALHYCHERK  134 (284)
T ss_dssp             HTCCCTTBCCEEEEE----------ECSSEEEEEECCCTTEEHHHHHH----HHSSCCHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             hcCCCCCEeeEEEEE----------EcCCEEEEEEEeCCCCcHHHHHH----hcCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            999999999999987          33567899999999999999886    3345999999999999999999999998


Q ss_pred             CCeeecCCCCCcEEEecCCCCCCceEEeeccceeecccc---CccCcccCCcccchhhhhhhhhhhhhcCcccchheehe
Q 024842          180 PPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSK---FALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMR  256 (262)
Q Consensus       180 ~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~---~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~  256 (262)
                        ++|+||||+||+++.++    .++|+|||++......   ...++..|.+||.+....     .....|+|++|++++
T Consensus       135 --i~H~dl~p~Nil~~~~~----~~kl~Dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-----~~~~~Di~slG~il~  203 (284)
T 2vgo_A          135 --VIHRDIKPENLLMGYKG----ELKIADFGWSVHAPSLRRRTMCGTLDYLPPEMIEGKT-----HDEKVDLWCAGVLCY  203 (284)
T ss_dssp             --EECCCCSGGGEEECTTC----CEEECCCTTCEECSSSCBCCCCSCGGGCCHHHHTTCC-----BCTTHHHHHHHHHHH
T ss_pred             --ceecCCCHHHEEEcCCC----CEEEecccccccCcccccccccCCCCcCCHHHhccCC-----CCcccchhhHHHHHH
Confidence              99999999999998776    6999999999765432   234666777777543221     122467788888887


Q ss_pred             ecccCC
Q 024842          257 ELMFGR  262 (262)
Q Consensus       257 ~l~~G~  262 (262)
                      +|++|+
T Consensus       204 ~l~~g~  209 (284)
T 2vgo_A          204 EFLVGM  209 (284)
T ss_dssp             HHHHSS
T ss_pred             HHHHCC
Confidence            777774

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=100.00  E-value=1.8e-33  Score=244.97  Aligned_cols=193  Identities=25%  Similarity=0.366  Sum_probs=154.5

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc---chHHHHHHHHHHHHhhh
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ---NNEQLEMVREEIRVSSL  101 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~---~~~~~~~~~~E~~~l~~  101 (262)
                      .++|++.+.||+|+||.||+|++..+++                      .||+|++...   .....+.+.+|+.+++.
T Consensus        25 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~----------------------~~avK~~~~~~~~~~~~~~~~~~E~~~l~~   82 (484)
T 3nyv_A           25 SDRYKGQRVLGKGSFGEVILCKDKITGQ----------------------ECAVKVISKRQVKQKTDKESLLREVQLLKQ   82 (484)
T ss_dssp             HHHEEEEEEEEEETTEEEEEEEETTTCC----------------------EEEEEEEETTTCCBSSCHHHHHHHHHHHTT
T ss_pred             cCceEEeeEEecCCCEEEEEEEECCCCC----------------------EEEEEEEEhhhcccchHHHHHHHHHHHHHh
Confidence            5789999999999999999999987665                      5666665332   23335678899999999


Q ss_pred             CCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCC
Q 024842          102 FSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPP  181 (262)
Q Consensus       102 l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~  181 (262)
                      ++||||+++++++          ......+++||++.+++|.+.+.    ....+++..++.++.|++.||.|||+++  
T Consensus        83 l~hpniv~~~~~~----------~~~~~~~lv~e~~~~~~L~~~~~----~~~~~~~~~~~~i~~qi~~~l~~lH~~~--  146 (484)
T 3nyv_A           83 LDHPNIMKLYEFF----------EDKGYFYLVGEVYTGGELFDEII----SRKRFSEVDAARIIRQVLSGITYMHKNK--  146 (484)
T ss_dssp             CCCTTBCCEEEEE----------ECSSEEEEEECCCCSCBHHHHHH----TCSCCBHHHHHHHHHHHHHHHHHHHHTT--
T ss_pred             CCCCCCCcEEEEE----------EeCCEEEEEEecCCCCCHHHHHH----hcCCCCHHHHHHHHHHHHHHHHHHHHCC--
Confidence            9999999999987          34678999999999999998886    4566999999999999999999999999  


Q ss_pred             eeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC----ccCcccCCcccchhhhhhhhhhhhhcCcccchheehee
Q 024842          182 YAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRE  257 (262)
Q Consensus       182 ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~  257 (262)
                      |+||||||+|||++..+ ....+||+|||++.......    ..+++.|.+||.+..      ......||||+|+++|+
T Consensus       147 ivH~Dlkp~Nil~~~~~-~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~------~~~~~~DiwslG~il~~  219 (484)
T 3nyv_A          147 IVHRDLKPENLLLESKS-KDANIRIIDFGLSTHFEASKKMKDKIGTAYYIAPEVLHG------TYDEKCDVWSTGVILYI  219 (484)
T ss_dssp             CCCSCCCGGGEEESSSS-TTCCEEECCTTHHHHBCCCCSHHHHTTGGGTCCHHHHHT------CCCTHHHHHHHHHHHHH
T ss_pred             eeeCCCCHHHEEEecCC-CCCcEEEEeeeeeEEcccccccccCCCCccccCceeecC------CCCCcceeHHHHHHHHH
Confidence            99999999999996432 12269999999998765433    257788888875432      11224578888888888


Q ss_pred             cccCC
Q 024842          258 LMFGR  262 (262)
Q Consensus       258 l~~G~  262 (262)
                      |++|+
T Consensus       220 ll~g~  224 (484)
T 3nyv_A          220 LLSGC  224 (484)
T ss_dssp             HHHSS
T ss_pred             HHHCC
Confidence            87774

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=100.00  E-value=5.3e-33  Score=239.81  Aligned_cols=192  Identities=20%  Similarity=0.294  Sum_probs=144.9

Q ss_pred             eeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhh
Q 024842           21 VWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSS  100 (262)
Q Consensus        21 ~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~  100 (262)
                      ..+..++|++.+.||+|+||.||+|.+..                        ..||+|.+....  ..+.+.+|+.+++
T Consensus       188 ~~i~~~~~~~~~~lG~G~fg~V~~~~~~~------------------------~~vavK~~~~~~--~~~~~~~E~~~l~  241 (450)
T 1k9a_A          188 WALNMKELKLLQTIGKGEFGDVMLGDYRG------------------------NKVAVKCIKNDA--TAQAFLAEASVMT  241 (450)
T ss_dssp             CBCCGGGEEEEEEEEECSSEEEEEEEETT------------------------EEEEEEEESSCT--TSHHHHHHHHHHH
T ss_pred             cccChHHeEEEeeecCcCCeeEEEEEecC------------------------CeEEEEEeCCch--HHHHHHHHHHHHH
Confidence            34667899999999999999999998752                        257888776543  3467889999999


Q ss_pred             hCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCC
Q 024842          101 LFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEP  180 (262)
Q Consensus       101 ~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~  180 (262)
                      .++||||+++++++.         ......+++|||+.+++|.+++...  ....+++..++.++.|++.||.|||+++ 
T Consensus       242 ~l~h~niv~~~~~~~---------~~~~~~~iv~e~~~~g~L~~~l~~~--~~~~~~~~~~~~~~~qi~~~l~~LH~~~-  309 (450)
T 1k9a_A          242 QLRHSNLVQLLGVIV---------EEKGGLYIVTEYMAKGSLVDYLRSR--GRSVLGGDCLLKFSLDVCEAMEYLEGNN-  309 (450)
T ss_dssp             TCCCTTBCCEEEEEE---------CTTSCEEEEEECCTTCBHHHHHHHH--CTTTCCHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred             hccCCCEEEEEEEEE---------cCCCceEEEEEecCCCcHHHHHHhc--CCCCCCHHHHHHHHHHHHHHHHHHHhCC-
Confidence            999999999999863         2234689999999999999998632  2234799999999999999999999999 


Q ss_pred             CeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC--ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheec
Q 024842          181 PYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF--ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMREL  258 (262)
Q Consensus       181 ~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~--~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l  258 (262)
                       ++||||||+|||++.++    .+||+|||++.......  ..++..|++||.+..-.     .....||||+|+++|||
T Consensus       310 -ivHrDlkp~Nill~~~~----~~kl~DfG~a~~~~~~~~~~~~~~~y~aPE~~~~~~-----~~~~sDvwslG~~l~el  379 (450)
T 1k9a_A          310 -FVHRDLAARNVLVSEDN----VAKVSDFGLTKEASSTQDTGKLPVKWTAPEALREKK-----FSTKSDVWSFGILLWEI  379 (450)
T ss_dssp             -EECSCCCGGGEEECTTS----CEEECCCTTCEECC------CCCTTTSCHHHHHSSC-----CCHHHHHHHHHHHHHHH
T ss_pred             -eeCCCCCHhhEEECCCC----CEEEeeCCCcccccccccCCCCCcceeCHHHhcCCC-----CCcHHHHHHHHHHHHHH
Confidence             99999999999998776    69999999998654322  23445566666332111     11124555555555555


Q ss_pred             cc
Q 024842          259 MF  260 (262)
Q Consensus       259 ~~  260 (262)
                      ++
T Consensus       380 ~t  381 (450)
T 1k9a_A          380 YS  381 (450)
T ss_dssp             HT
T ss_pred             Hh
Confidence            54

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=100.00  E-value=3.8e-33  Score=224.57  Aligned_cols=193  Identities=19%  Similarity=0.212  Sum_probs=149.5

Q ss_pred             ceeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHh
Q 024842           20 DVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVS   99 (262)
Q Consensus        20 ~~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l   99 (262)
                      +..++.++|++.+.||+|+||.||+|.+..                       +..+++|.+...... .+.+.+|+.++
T Consensus         2 ~~~i~~~~y~~~~~lg~G~~g~V~~~~~~~-----------------------~~~vaiK~~~~~~~~-~~~~~~e~~~l   57 (267)
T 3t9t_A            2 KWVIDPSELTFVQEIGSGQFGLVHLGYWLN-----------------------KDKVAIKTIREGAMS-EEDFIEEAEVM   57 (267)
T ss_dssp             -CBCCGGGEEEEEEEEEETTEEEEEEEETT-----------------------TEEEEEEEECTTTBC-HHHHHHHHHHH
T ss_pred             ceEEchhheeeeeEecCCCceeEEEEEecC-----------------------CCeEEEEEccccCCC-HHHHHHHHHHH
Confidence            345677899999999999999999999863                       235788877654332 25788999999


Q ss_pred             hhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCC
Q 024842          100 SLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLE  179 (262)
Q Consensus       100 ~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~  179 (262)
                      +.++||||+++++++          ......+++||++.+++|.+++..   ....+++..++.++.|++.||.|||+.+
T Consensus        58 ~~l~h~~i~~~~~~~----------~~~~~~~lv~e~~~~~~L~~~~~~---~~~~~~~~~~~~~~~~i~~~l~~lH~~~  124 (267)
T 3t9t_A           58 MKLSHPKLVQLYGVC----------LEQAPICLVTEFMEHGCLSDYLRT---QRGLFAAETLLGMCLDVCEGMAYLEEAC  124 (267)
T ss_dssp             HTCCCTTBCCEEEEE----------CSSSSCEEEECCCTTCBHHHHHHH---TTTCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HhCCCCCEeeEEEEE----------ccCCCeEEEEeCCCCCcHHHHHhh---CcccCCHHHHHHHHHHHHHHHHHHHhCC
Confidence            999999999999987          335678999999999999998863   3355899999999999999999999999


Q ss_pred             CCeeecCCCCCcEEEecCCCCCCceEEeeccceeecccc------CccCcccCCcccchhhhhhhhhhhhhcCcccchhe
Q 024842          180 PPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSK------FALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQI  253 (262)
Q Consensus       180 ~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~------~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~  253 (262)
                        ++|+||||+||+++.++    .++|+|||++......      ...++..|.+||.+....+     ....|+|++|+
T Consensus       125 --i~H~dl~p~Nili~~~~----~~kl~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~-----~~~~Di~slG~  193 (267)
T 3t9t_A          125 --VIHRDLAARNCLVGENQ----VIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSRY-----SSKSDVWSFGV  193 (267)
T ss_dssp             --CCCSSCCGGGEEECGGG----CEEECCTTGGGGBCCHHHHSTTSTTCCGGGCCHHHHHHCCC-----CHHHHHHHHHH
T ss_pred             --cccCCCchheEEECCCC----CEEEcccccccccccccccccccccccccccChhhhcCCCc-----cchhchhhhHH
Confidence              99999999999998776    6999999999865432      1234445777664422111     12356666666


Q ss_pred             eheeccc
Q 024842          254 LMRELMF  260 (262)
Q Consensus       254 ~~~~l~~  260 (262)
                      ++|+|++
T Consensus       194 il~~l~~  200 (267)
T 3t9t_A          194 LMWEVFS  200 (267)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhc
Confidence            6666666

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...

Probab=100.00  E-value=9.2e-33  Score=225.89  Aligned_cols=195  Identities=20%  Similarity=0.222  Sum_probs=146.4

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc-chHHHHHHHHHHHHhhhCC
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ-NNEQLEMVREEIRVSSLFS  103 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~-~~~~~~~~~~E~~~l~~l~  103 (262)
                      ..+|++.+.||+|+||.||+|++..++..                   ...+++|..... .....+.+.+|+.+++.++
T Consensus        24 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~-------------------~~~~avk~~~~~~~~~~~~~~~~E~~~l~~l~   84 (298)
T 3f66_A           24 SLIVHFNEVIGRGHFGCVYHGTLLDNDGK-------------------KIHCAVKSLNRITDIGEVSQFLTEGIIMKDFS   84 (298)
T ss_dssp             GEEEEEEEEEEEETTEEEEEEEEC------------------------CEEEEEEEETTCCSHHHHHHHHHHHHHHHTCC
T ss_pred             ceehhhcceeeecCCceEEEEEEecCCCc-------------------eeEEEEEecccCCCHHHHHHHHHHHHHHHhCC
Confidence            45799999999999999999997654321                   224677776543 3445678899999999999


Q ss_pred             CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCee
Q 024842          104 HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYA  183 (262)
Q Consensus       104 h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~iv  183 (262)
                      ||||+++++++.         ......+++||++.+++|.+++..   ....+++..++.++.|++.||.|||+++  ++
T Consensus        85 h~~iv~~~~~~~---------~~~~~~~~v~e~~~~~~L~~~l~~---~~~~~~~~~~~~i~~ql~~~l~~lH~~~--i~  150 (298)
T 3f66_A           85 HPNVLSLLGICL---------RSEGSPLVVLPYMKHGDLRNFIRN---ETHNPTVKDLIGFGLQVAKGMKYLASKK--FV  150 (298)
T ss_dssp             CTTBCCCCEEEC---------CSSSCCEEEEECCTTCBHHHHHHC---TTCCCCHHHHHHHHHHHHHHHHHHHHTT--CC
T ss_pred             CCCEeeeeeEEE---------cCCCceEEEEeCCCCCCHHHHHHh---cccCCCHHHHHHHHHHHHHHHHHHHhCC--cc
Confidence            999999999853         335678999999999999998852   3455899999999999999999999999  99


Q ss_pred             ecCCCCCcEEEecCCCCCCceEEeeccceeeccccC---------ccCcccCCcccchhhhhhhhhhhhhcCcccchhee
Q 024842          184 HNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF---------ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQIL  254 (262)
Q Consensus       184 H~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~---------~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~  254 (262)
                      ||||||+||+++.++    .+||+|||++.......         ..+++.|.+||.+....+     ....|+|++|++
T Consensus       151 H~dikp~Nil~~~~~----~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~-----~~~~Di~slG~i  221 (298)
T 3f66_A          151 HRDLAARNCMLDEKF----TVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQTQKF-----TTKSDVWSFGVL  221 (298)
T ss_dssp             CSCCSGGGEEECTTC----CEEECSCGGGCCCSCGGGCBC-----CCBCGGGSCHHHHHHCCC-----CHHHHHHHHHHH
T ss_pred             CCCCchheEEECCCC----CEEECcccccccccccchhccccccCCCCCccccChHHhcCCCC-----ChHHHHHHHHHH
Confidence            999999999998766    69999999998654322         123445666664422111     112466666666


Q ss_pred             heecccC
Q 024842          255 MRELMFG  261 (262)
Q Consensus       255 ~~~l~~G  261 (262)
                      +++|++|
T Consensus       222 l~~l~~~  228 (298)
T 3f66_A          222 LWELMTR  228 (298)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHhC
Confidence            6666663

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*

Probab=100.00  E-value=1.2e-33  Score=231.54  Aligned_cols=198  Identities=19%  Similarity=0.242  Sum_probs=151.1

Q ss_pred             cCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCC
Q 024842           24 NENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFS  103 (262)
Q Consensus        24 ~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~  103 (262)
                      ..++|++.+.||+|+||.||+|++..+++                      .+++|.+........+.+.+|+.+++.++
T Consensus        17 ~~~~y~i~~~lg~G~~g~V~~~~~~~~~~----------------------~~aiK~~~~~~~~~~~~~~~e~~~l~~l~   74 (302)
T 2j7t_A           17 PNEVWEIVGELGDGAFGKVYKAKNKETGA----------------------LAAAKVIETKSEEELEDYIVEIEILATCD   74 (302)
T ss_dssp             GGGTEEEEEEEECSTTCCEEEEEETTTCC----------------------EEEEEEEC----CCHHHHHHHHHHHHHCC
T ss_pred             CccceeecceeccCCCeEEEEEEEcCCCc----------------------EEEEEEecCCCHHHHHHHHHHHHHHhcCC
Confidence            46789999999999999999999876654                      57777766554445678889999999999


Q ss_pred             CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCee
Q 024842          104 HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYA  183 (262)
Q Consensus       104 h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~iv  183 (262)
                      ||||+++++++.          .....+++||++.+++|.+++..   ....+++..++.++.|++.||.|||+.+  ++
T Consensus        75 h~~i~~~~~~~~----------~~~~~~lv~e~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~i~~~l~~lH~~~--i~  139 (302)
T 2j7t_A           75 HPYIVKLLGAYY----------HDGKLWIMIEFCPGGAVDAIMLE---LDRGLTEPQIQVVCRQMLEALNFLHSKR--II  139 (302)
T ss_dssp             CTTBCCEEEEEE----------CC-CEEEEEECCTTEEHHHHHHH---HTSCCCHHHHHHHHHHHHHHHHHHHHTT--CC
T ss_pred             CCCEeeeeeeee----------eCCeEEEEEEeCCCCcHHHHHHh---hccCCCHHHHHHHHHHHHHHHHHHhcCC--cc
Confidence            999999999873          35678999999999999988753   2455999999999999999999999998  99


Q ss_pred             ecCCCCCcEEEecCCCCCCceEEeeccceeecc-----ccCccCcccCCcccchhhhhhhhhhhhhcCcccchheeheec
Q 024842          184 HNDVKPGNILITCRKGQPPLAILMDFGSARPAQ-----SKFALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMREL  258 (262)
Q Consensus       184 H~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~-----~~~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l  258 (262)
                      |+||||+||+++.++    .++|+|||++....     .....++..|.+||.+..............|+|++|+++++|
T Consensus       140 H~dlkp~Nil~~~~~----~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l  215 (302)
T 2j7t_A          140 HRDLKAGNVLMTLEG----DIRLADFGVSAKNLKTLQKRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEM  215 (302)
T ss_dssp             CCCCSGGGEEECTTS----CEEECCCHHHHHHHHHHHC-----CCGGGCCHHHHHHHHTTSTTTTTHHHHHHHHHHHHHH
T ss_pred             cCCCCHHHEEECCCC----CEEEEECCCCccccccccccccccCChhhcCCeeeccccCCCCCCchhhhHHHHHHHHHHH
Confidence            999999999998776    69999999876432     122356677777776532111111122246788888888888


Q ss_pred             ccCC
Q 024842          259 MFGR  262 (262)
Q Consensus       259 ~~G~  262 (262)
                      ++|+
T Consensus       216 ~~g~  219 (302)
T 2j7t_A          216 AQIE  219 (302)
T ss_dssp             HHSS
T ss_pred             hcCC
Confidence            7774

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...

Probab=100.00  E-value=2.1e-33  Score=236.18  Aligned_cols=203  Identities=25%  Similarity=0.344  Sum_probs=139.0

Q ss_pred             CCceeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc--chHHHHHHHHH
Q 024842           18 GGDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ--NNEQLEMVREE   95 (262)
Q Consensus        18 ~~~~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~--~~~~~~~~~~E   95 (262)
                      .+..|-..++|++.+.||+|+||.||+|.+..+++                      .||+|++...  .....+.+.+|
T Consensus        21 ~~~~~~~~~~y~~~~~lG~G~~g~V~~a~~~~~~~----------------------~vaiK~~~~~~~~~~~~~~~~~E   78 (367)
T 2fst_X           21 NKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGL----------------------RVAVKKLSRPFQSIIHAKRTYRE   78 (367)
T ss_dssp             TTEEEEEETTEEEEEECC----CCEEEEEETTTTE----------------------EEEEEECSSTTSSHHHHHHHHHH
T ss_pred             cCcccCCCCceEEeeEEeecCCeEEEEEEECCCCC----------------------EEEEEEeCccccCHHHHHHHHHH
Confidence            34566667899999999999999999999887655                      6777776543  34456778899


Q ss_pred             HHHhhhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHH
Q 024842           96 IRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHM  175 (262)
Q Consensus        96 ~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~l  175 (262)
                      +.+++.++||||+++++++....    ........+++++++ +++|.+++.     ...+++..++.++.|++.||.||
T Consensus        79 ~~~l~~l~hpnIv~~~~~~~~~~----~~~~~~~~~lv~e~~-~~~L~~~~~-----~~~l~~~~~~~i~~qi~~aL~~L  148 (367)
T 2fst_X           79 LRLLKHMKHENVIGLLDVFTPAR----SLEEFNDVYLVTHLM-GADLNNIVK-----CQKLTDDHVQFLIYQILRGLKYI  148 (367)
T ss_dssp             HHHHHHCCCTTBCCCSEEECSCS----SGGGCCCCEEEEECC-CEECC----------CCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCCCCcEEEEEecCC----ccccCCeEEEEeccc-CCCHHHHHh-----cCCCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999873100    001135578999977 789988875     24599999999999999999999


Q ss_pred             HcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC--ccCcccCCcccchhhhhhhhhhhhhcCcccchhe
Q 024842          176 HSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF--ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQI  253 (262)
Q Consensus       176 H~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~--~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~  253 (262)
                      |+.+  |+||||||+||+++.++    .+||+|||++.......  ..++..|.+||.+....    ......|+||+|+
T Consensus       149 H~~g--ivH~Dlkp~NIll~~~~----~~kL~DFG~a~~~~~~~~~~~~t~~y~aPE~~~~~~----~~~~~~DiwslG~  218 (367)
T 2fst_X          149 HSAD--IIHRDLKPSNLAVNEDC----ELKILDFGLARHTADEMTGYVATRWYRAPEIMLNWM----HYNQTVDIWSVGC  218 (367)
T ss_dssp             HHTT--CCCCCCCGGGEEECTTC----CEEECC---------------CCCTTCCHHHHTTCC----SCCTTHHHHHHHH
T ss_pred             HHCC--eeeCCCCHhhEEECCCC----CEEEeeccccccccccCCCcCcCcCccChHHHcCCc----CCCchhhHHHHHH
Confidence            9999  99999999999998776    69999999998754332  34666677776543211    1112357777777


Q ss_pred             eheecccCC
Q 024842          254 LMRELMFGR  262 (262)
Q Consensus       254 ~~~~l~~G~  262 (262)
                      ++++|++|+
T Consensus       219 il~ell~g~  227 (367)
T 2fst_X          219 IMAELLTGR  227 (367)
T ss_dssp             HHHHHHHSS
T ss_pred             HHHHHHhCC
Confidence            777777764

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*

Probab=100.00  E-value=2.1e-33  Score=233.12  Aligned_cols=195  Identities=27%  Similarity=0.351  Sum_probs=150.7

Q ss_pred             eecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc--chHHHHHHHHHHHHh
Q 024842           22 WINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ--NNEQLEMVREEIRVS   99 (262)
Q Consensus        22 ~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~--~~~~~~~~~~E~~~l   99 (262)
                      +...++|++.+.||+|+||.||+|++..+++                      .|++|++...  .....+.+.+|+.++
T Consensus        21 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~----------------------~vavK~~~~~~~~~~~~~~~~~E~~~l   78 (331)
T 4aaa_A           21 FQSMEKYENLGLVGEGSYGMVMKCRNKDTGR----------------------IVAIKKFLESDDDKMVKKIAMREIKLL   78 (331)
T ss_dssp             CBCGGGEEEEEEGGGGTTSSEEEEEETTTCC----------------------EEEEEEEESCSSCHHHHHHHHHHHHHH
T ss_pred             hhhhhhheeeeEEeecCCEEEEEEEECCCCc----------------------eEEEEEEecCCCchHHHHHHHHHHHHH
Confidence            3346799999999999999999999887655                      6777766443  333456678999999


Q ss_pred             hhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCC
Q 024842          100 SLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLE  179 (262)
Q Consensus       100 ~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~  179 (262)
                      +.++||||+++++++          ......+++||++.+++|.++..    ....+++..++.++.|++.||.|||+.+
T Consensus        79 ~~l~h~~iv~~~~~~----------~~~~~~~lv~e~~~~~~l~~~~~----~~~~~~~~~~~~~~~qi~~~l~~LH~~~  144 (331)
T 4aaa_A           79 KQLRHENLVNLLEVC----------KKKKRWYLVFEFVDHTILDDLEL----FPNGLDYQVVQKYLFQIINGIGFCHSHN  144 (331)
T ss_dssp             HHCCCTTBCCEEEEE----------EETTEEEEEEECCSEEHHHHHHH----STTCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             hhCCCCCEeeEEEEe----------ecCCEEEEEEecCCcchHHHHHh----hccCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            999999999999987          34677899999999988887754    4556999999999999999999999999


Q ss_pred             CCeeecCCCCCcEEEecCCCCCCceEEeeccceeecccc-----CccCcccCCcccchhhhhhhhhhhhhcCcccchhee
Q 024842          180 PPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSK-----FALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQIL  254 (262)
Q Consensus       180 ~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~-----~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~  254 (262)
                        ++||||||+||+++.++    .+||+|||++......     ...++..|.+||.+..-.    ......|+|++|++
T Consensus       145 --ivH~dlkp~Nil~~~~~----~~kl~Dfg~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~----~~~~~~Di~slG~i  214 (331)
T 4aaa_A          145 --IIHRDIKPENILVSQSG----VVKLCDFGFARTLAAPGEVYDDEVATRWYRAPELLVGDV----KYGKAVDVWAIGCL  214 (331)
T ss_dssp             --CCCCCCCGGGEEECTTS----CEEECCCTTC------------CCCCCTTCCHHHHTTCT----TCCTHHHHHHHHHH
T ss_pred             --EEccCcChheEEEcCCC----cEEEEeCCCceeecCCccccCCCcCCccccCcccccCCC----CcchHHHHHHHHHH
Confidence              99999999999998776    6999999999765432     234666777777553210    11123578888888


Q ss_pred             heecccCC
Q 024842          255 MRELMFGR  262 (262)
Q Consensus       255 ~~~l~~G~  262 (262)
                      +|+|++|+
T Consensus       215 l~~l~~g~  222 (331)
T 4aaa_A          215 VTEMFMGE  222 (331)
T ss_dssp             HHHHHHSS
T ss_pred             HHHHHhCC
Confidence            88877774

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*

Probab=100.00  E-value=2.5e-33  Score=231.77  Aligned_cols=196  Identities=19%  Similarity=0.276  Sum_probs=150.6

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc--------hHHHHHHHHHH
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN--------NEQLEMVREEI   96 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~--------~~~~~~~~~E~   96 (262)
                      .++|++.+.||+|+||.||+|++..+++                      .||+|.+....        ......+.+|+
T Consensus         9 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~----------------------~vavK~~~~~~~~~~~~~~~~~~~~~~~E~   66 (322)
T 2ycf_A            9 RDEYIMSKTLGSGACGEVKLAFERKTCK----------------------KVAIKIISKRKFAIGSAREADPALNVETEI   66 (322)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTTE----------------------EEEEEEECC---------------CHHHHH
T ss_pred             hhceeEeeEEecCCCEEEEEEEEcCCCc----------------------EEEEEEeehhhhhhcccccchhhhhHHHHH
Confidence            4689999999999999999999987655                      56666554321        12234578899


Q ss_pred             HHhhhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHH
Q 024842           97 RVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMH  176 (262)
Q Consensus        97 ~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH  176 (262)
                      .+++.++||||+++++++.           ....+++||++.+++|.+++.    ....+++..++.++.|++.||.|||
T Consensus        67 ~~l~~l~h~~i~~~~~~~~-----------~~~~~lv~e~~~~~~L~~~~~----~~~~~~~~~~~~~~~qi~~~l~~lH  131 (322)
T 2ycf_A           67 EILKKLNHPCIIKIKNFFD-----------AEDYYIVLELMEGGELFDKVV----GNKRLKEATCKLYFYQMLLAVQYLH  131 (322)
T ss_dssp             HHHHHCCCTTBCCEEEEEE-----------SSSEEEEEECCTTEETHHHHS----TTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCCCCceEeeEEc-----------CCceEEEEecCCCCcHHHHHh----ccCCCCHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998862           234899999999999998875    4556999999999999999999999


Q ss_pred             cCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC----ccCcccCCcccchhhhhhhhhhhhhcCcccchh
Q 024842          177 SLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQ  252 (262)
Q Consensus       177 ~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g  252 (262)
                      +++  ++||||||+||+++.++. ...+||+|||++.......    ..++..|.+||.+.+.+...  .....|+|++|
T Consensus       132 ~~~--ivH~dlkp~NIl~~~~~~-~~~~kl~Dfg~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~--~~~~~Di~slG  206 (322)
T 2ycf_A          132 ENG--IIHRDLKPENVLLSSQEE-DCLIKITDFGHSKILGETSLMRTLCGTPTYLAPEVLVSVGTAG--YNRAVDCWSLG  206 (322)
T ss_dssp             HTT--EECCCCSGGGEEESSSSS-SCCEEECCCTTCEECCCCHHHHHHHSCCTTCCHHHHHHTTTTT--CTTHHHHHHHH
T ss_pred             HCC--eeccCCCHHHEEEecCCC-CCeEEEccCccceecccccccccccCCcCccCchhhccCCCCC--CCchhhHHHHH
Confidence            999  999999999999986542 2259999999998765432    24677788887654322111  11236888888


Q ss_pred             eeheecccCC
Q 024842          253 ILMRELMFGR  262 (262)
Q Consensus       253 ~~~~~l~~G~  262 (262)
                      +++|+|++|+
T Consensus       207 ~il~~l~~g~  216 (322)
T 2ycf_A          207 VILFICLSGY  216 (322)
T ss_dssp             HHHHHHHHSS
T ss_pred             HHHHHHHhCC
Confidence            8888888874

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=100.00  E-value=4.9e-33  Score=242.65  Aligned_cols=195  Identities=19%  Similarity=0.209  Sum_probs=150.0

Q ss_pred             ceeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHh
Q 024842           20 DVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVS   99 (262)
Q Consensus        20 ~~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l   99 (262)
                      ...+..++|++.+.||+|+||.||+|.+..++.                      .||+|.+..... ..+.+.+|+.++
T Consensus       214 ~~~~~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~----------------------~vavK~~~~~~~-~~~~~~~E~~~l  270 (495)
T 1opk_A          214 KWEMERTDITMKHKLGGGQYGEVYEGVWKKYSL----------------------TVAVKTLKEDTM-EVEEFLKEAAVM  270 (495)
T ss_dssp             CCBCCGGGEEEEEESGGGTTSSEEEEEEGGGTE----------------------EEEEEECCSSSS-CHHHHHHHHHHH
T ss_pred             ccccCHHHceeeeEecCCCCeEEEEEEEcCCCe----------------------EEEEEEecCccc-chHHHHHHHHHH
Confidence            344567899999999999999999999886544                      577777654432 246788999999


Q ss_pred             hhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCC
Q 024842          100 SLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLE  179 (262)
Q Consensus       100 ~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~  179 (262)
                      +.++||||+++++++          ......+++|||+.+++|.+++...  ....+++..++.++.|++.||.|||+++
T Consensus       271 ~~l~hpniv~l~~~~----------~~~~~~~lv~E~~~~g~L~~~l~~~--~~~~~~~~~~~~i~~qi~~~L~~LH~~~  338 (495)
T 1opk_A          271 KEIKHPNLVQLLGVC----------TREPPFYIITEFMTYGNLLDYLREC--NRQEVSAVVLLYMATQISSAMEYLEKKN  338 (495)
T ss_dssp             HHCCCTTBCCEEEEE----------CSSSSCEEEEECCTTCBHHHHHHHS--CTTTSCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HhcCCCCEeeEEEEE----------ecCCcEEEEEEccCCCCHHHHHHhc--CcCCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence            999999999999987          3456789999999999999988632  2345899999999999999999999999


Q ss_pred             CCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccCc------cCcccCCcccchhhhhhhhhhhhhcCcccchhe
Q 024842          180 PPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKFA------LGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQI  253 (262)
Q Consensus       180 ~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~~------~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~  253 (262)
                        |+||||||+|||++.++    .+||+|||++........      .++..|.+||.+..-.     .....||||+|+
T Consensus       339 --ivHrDlkp~NIll~~~~----~~kl~DFG~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-----~~~~sDvwSlG~  407 (495)
T 1opk_A          339 --FIHRNLAARNCLVGENH----LVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNK-----FSIKSDVWAFGV  407 (495)
T ss_dssp             --EECSCCSGGGEEECGGG----CEEECCTTCEECCTTCCEECCTTCCCCGGGCCHHHHHHCE-----ECHHHHHHHHHH
T ss_pred             --cccCCCChhhEEECCCC----cEEEeecccceeccCCceeecCCCcCCcceeCHhHHhcCC-----CCcHHhHHhHHH
Confidence              99999999999998776    699999999987653321      2334577766332111     111245555555


Q ss_pred             eheeccc
Q 024842          254 LMRELMF  260 (262)
Q Consensus       254 ~~~~l~~  260 (262)
                      ++|||++
T Consensus       408 ~l~el~t  414 (495)
T 1opk_A          408 LLWEIAT  414 (495)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHh
Confidence            5555555

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*

Probab=100.00  E-value=5.3e-33  Score=228.72  Aligned_cols=203  Identities=21%  Similarity=0.258  Sum_probs=154.2

Q ss_pred             ceeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc-hHHHHHHHHHHHH
Q 024842           20 DVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN-NEQLEMVREEIRV   98 (262)
Q Consensus        20 ~~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~-~~~~~~~~~E~~~   98 (262)
                      ...+..++|++.+.||+|+||.||+|++.....                 ...+..+++|.+.... ....+.+.+|+.+
T Consensus        17 ~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~-----------------~~~~~~vavK~~~~~~~~~~~~~~~~E~~~   79 (313)
T 1t46_A           17 KWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIK-----------------SDAAMTVAVKMLKPSAHLTEREALMSELKV   79 (313)
T ss_dssp             GGBCCGGGEEEEEEEEECSSEEEEEEEEESSSS-----------------TTCEEEEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred             ccccChhhhhHHHhhCccCCcceEEEEEeeccc-----------------cchhhhhHHHhcCcchhHHHHHHHHHHHHH
Confidence            344667899999999999999999998643211                 0134578888876543 3445778999999


Q ss_pred             hhhC-CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhc--------------CCCCCHHHHHH
Q 024842           99 SSLF-SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTK--------------KEFFSTSDVLQ  163 (262)
Q Consensus        99 l~~l-~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~--------------~~~~~~~~~~~  163 (262)
                      ++.+ +||||+++++++          ...+..+++||++.+++|.+++......              ...+++..++.
T Consensus        80 l~~l~~h~~i~~~~~~~----------~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (313)
T 1t46_A           80 LSYLGNHMNIVNLLGAC----------TIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLS  149 (313)
T ss_dssp             HHHHCCCTTBCCEEEEE----------CSSSSCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHH
T ss_pred             HhhcccCCCeeeEEEEE----------ecCCCcEEEEecCCCCCHHHHHHhcccccccccccccccccccccCCHHHHHH
Confidence            9999 899999999987          3456789999999999999988743211              22589999999


Q ss_pred             HHHHHHHHHHHHHcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccCc-------cCcccCCcccchhhhh
Q 024842          164 IFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKFA-------LGQRRYSCRNGLLSIV  236 (262)
Q Consensus       164 i~~ql~~~l~~lH~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~~-------~~~~~~~~~~d~~s~g  236 (262)
                      ++.|++.||.|||+++  ++||||||+||+++.++    .+||+|||++........       .++..|.+||.+....
T Consensus       150 ~~~qi~~~l~~lH~~~--i~H~dlkp~Nil~~~~~----~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  223 (313)
T 1t46_A          150 FSYQVAKGMAFLASKN--CIHRDLAARNILLTHGR----ITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCV  223 (313)
T ss_dssp             HHHHHHHHHHHHHHTT--CCCSCCSGGGEEEETTT----EEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHCC--eecCCCccceEEEcCCC----CEEEccccccccccccccceeccCCCCcceeeChHHhcCCC
Confidence            9999999999999998  99999999999998776    799999999987654321       2344577777443221


Q ss_pred             hhhhhhhhcCcccchheeheeccc
Q 024842          237 LHLSELLSCGTVRVIQILMRELMF  260 (262)
Q Consensus       237 ~~~~e~~~~~~v~~~g~~~~~l~~  260 (262)
                           .....|+|++|+++++|++
T Consensus       224 -----~~~~~Di~slG~il~ellt  242 (313)
T 1t46_A          224 -----YTFESDVWSYGIFLWELFS  242 (313)
T ss_dssp             -----CCHHHHHHHHHHHHHHHHT
T ss_pred             -----CChHHHHHHHHHHHHHHHh
Confidence                 1123567777777777665

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=3.3e-33  Score=236.49  Aligned_cols=202  Identities=23%  Similarity=0.324  Sum_probs=147.8

Q ss_pred             cCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCC
Q 024842           24 NENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFS  103 (262)
Q Consensus        24 ~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~  103 (262)
                      ..++|++.+.||+|+||.||+|++..+++                      .||+|++.....    ...+|+.+++.++
T Consensus         5 ~~~~y~~~~~lG~G~fg~V~~a~~~~~~~----------------------~vAiK~~~~~~~----~~~~E~~il~~l~   58 (383)
T 3eb0_A            5 SSKKYSLGKTLGTGSFGIVCEVFDIESGK----------------------RFALKKVLQDPR----YKNRELDIMKVLD   58 (383)
T ss_dssp             -CTTEEEEEEEECC-CEEEEEEEETTTCC----------------------EEEEEEEECCTT----SCCHHHHHHTTCC
T ss_pred             ccceEEEEEEEEeccCEEEEEEEECCCCC----------------------EEEEEEEecCcc----hHHHHHHHHHHcC
Confidence            46789999999999999999999987765                      567776643321    1236899999999


Q ss_pred             CCCccchhhhhHHHhhhc----------------------------cCCCCcceeEEEEeecCCCchhhHHHHhhhcCCC
Q 024842          104 HRNLLPLLDHAIIAVKAN----------------------------QEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEF  155 (262)
Q Consensus       104 h~~i~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~  155 (262)
                      ||||+++++++.......                            .........+++|||+. ++|.+.+.........
T Consensus        59 hpnIv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~  137 (383)
T 3eb0_A           59 HVNIIKLVDYFYTTGDEEPKPPQPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVP-DTLHKVLKSFIRSGRS  137 (383)
T ss_dssp             CTTBCCEEEEEEEC-------------------------------------CCEEEEEECCCS-EEHHHHHHHHHHTTCC
T ss_pred             CCCccchhheeeecCcccccccccccccccccccccccccccccccccCCCceEEEEEEecCC-ccHHHHHHHHHhcCCC
Confidence            999999998874211000                            00022345889999988 5888887766556778


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHcCCCCeeecCCCCCcEEEec-CCCCCCceEEeeccceeeccccC----ccCcccCCccc
Q 024842          156 FSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITC-RKGQPPLAILMDFGSARPAQSKF----ALGQRRYSCRN  230 (262)
Q Consensus       156 ~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~dikp~Nill~~-~~~~~~~~kl~Dfg~a~~~~~~~----~~~~~~~~~~~  230 (262)
                      +++..++.++.|++.||.|||+.+  |+||||||+||+++. ++    .+||+|||+|.......    ..++..|.+||
T Consensus       138 l~~~~~~~i~~qi~~aL~~LH~~g--i~H~Dikp~Nil~~~~~~----~~kl~Dfg~a~~~~~~~~~~~~~~t~~y~aPE  211 (383)
T 3eb0_A          138 IPMNLISIYIYQLFRAVGFIHSLG--ICHRDIKPQNLLVNSKDN----TLKLCDFGSAKKLIPSEPSVAYICSRFYRAPE  211 (383)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHTTT--EECSCCCGGGEEEETTTT----EEEECCCTTCEECCTTSCCCCCCCCSSCCCHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCc--CccCccCHHHEEEcCCCC----cEEEEECCCCcccCCCCCCcCcccCCCccCHH
Confidence            999999999999999999999999  999999999999974 44    79999999998764332    24566677777


Q ss_pred             chhhhhhhhhhhhhcCcccchheeheecccCC
Q 024842          231 GLLSIVLHLSELLSCGTVRVIQILMRELMFGR  262 (262)
Q Consensus       231 d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~G~  262 (262)
                      .+....    ......|+||+|+++++|++|+
T Consensus       212 ~~~~~~----~~~~~~DiwslG~il~ell~g~  239 (383)
T 3eb0_A          212 LMLGAT----EYTPSIDLWSIGCVFGELILGK  239 (383)
T ss_dssp             HHTTCS----SCCTHHHHHHHHHHHHHHHHSS
T ss_pred             HhcCCC----CCCcchhhhhHHHHHHHHHhCC
Confidence            553211    1122357777777777777774

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0

Probab=100.00  E-value=7.4e-33  Score=223.40  Aligned_cols=196  Identities=22%  Similarity=0.285  Sum_probs=143.1

Q ss_pred             ecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccch----HHHHHHHHHHHH
Q 024842           23 INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNN----EQLEMVREEIRV   98 (262)
Q Consensus        23 ~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~----~~~~~~~~E~~~   98 (262)
                      ++.++|++.+.||+|+||.||+|.+.  +                      ..+++|.......    ...+.+.+|+.+
T Consensus         4 ~~~~~~~~~~~lg~G~~g~V~~~~~~--~----------------------~~vavK~~~~~~~~~~~~~~~~~~~e~~~   59 (271)
T 3dtc_A            4 IDFAELTLEEIIGIGGFGKVYRAFWI--G----------------------DEVAVKAARHDPDEDISQTIENVRQEAKL   59 (271)
T ss_dssp             CCTTSEEEEEEEEEETTEEEEEEEET--T----------------------EEEEEEEC----------CHHHHHHHHHH
T ss_pred             cchhheeeeeeeccCCCeEEEEEEEc--C----------------------CeEEEEEEecCCcccHHHHHHHHHHHHHH
Confidence            45689999999999999999999975  2                      2577776654322    224678899999


Q ss_pred             hhhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcC
Q 024842           99 SSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSL  178 (262)
Q Consensus        99 l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~  178 (262)
                      ++.++||||+++++++          ......+++||++.+++|.+++.     ...+++..++.++.|++.||.|||++
T Consensus        60 l~~l~h~~i~~~~~~~----------~~~~~~~lv~e~~~~~~L~~~~~-----~~~~~~~~~~~i~~~l~~~l~~lH~~  124 (271)
T 3dtc_A           60 FAMLKHPNIIALRGVC----------LKEPNLCLVMEFARGGPLNRVLS-----GKRIPPDILVNWAVQIARGMNYLHDE  124 (271)
T ss_dssp             HHHCCCTTBCCEEEEE----------CCC--CEEEEECCTTEEHHHHHT-----SSCCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHhcCCCCEeeEEEEE----------ecCCceEEEEEcCCCCCHHHHhh-----cCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            9999999999999987          34567899999999999998873     44699999999999999999999997


Q ss_pred             CC-CeeecCCCCCcEEEecCCC----CCCceEEeeccceeeccccC---ccCcccCCcccchhhhhhhhhhhhhcCcccc
Q 024842          179 EP-PYAHNDVKPGNILITCRKG----QPPLAILMDFGSARPAQSKF---ALGQRRYSCRNGLLSIVLHLSELLSCGTVRV  250 (262)
Q Consensus       179 ~~-~ivH~dikp~Nill~~~~~----~~~~~kl~Dfg~a~~~~~~~---~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~  250 (262)
                      +. +++||||||+||+++.+..    ....++|+|||++.......   ..+++.|.+||.+....     .....|+|+
T Consensus       125 ~~~~i~H~dikp~Nil~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-----~~~~~Di~s  199 (271)
T 3dtc_A          125 AIVPIIHRDLKSSNILILQKVENGDLSNKILKITDFGLAREWHRTTKMSAAGAYAWMAPEVIRASM-----FSKGSDVWS  199 (271)
T ss_dssp             SSSCCCCSCCSGGGEEESSCCSSSCCSSCCEEECCCCC-------------CCGGGSCHHHHHHCC-----CSHHHHHHH
T ss_pred             CCCceeecCCchHHEEEecccccccccCcceEEccCCcccccccccccCCCCccceeCHHHhccCC-----CCchhhHHH
Confidence            63 3889999999999976321    12369999999998654332   35677788877553321     112357888


Q ss_pred             hheeheecccCC
Q 024842          251 IQILMRELMFGR  262 (262)
Q Consensus       251 ~g~~~~~l~~G~  262 (262)
                      +|+++++|++|+
T Consensus       200 lG~~l~~l~~g~  211 (271)
T 3dtc_A          200 YGVLLWELLTGE  211 (271)
T ss_dssp             HHHHHHHHHHCC
T ss_pred             HHHHHHHHHhCC
Confidence            888888877774

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=7.3e-34  Score=238.15  Aligned_cols=196  Identities=23%  Similarity=0.291  Sum_probs=151.4

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc----hHHHHHHHHHHHHhh
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN----NEQLEMVREEIRVSS  100 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~----~~~~~~~~~E~~~l~  100 (262)
                      .++|++.+.||+|+||.||+|++.....                   .+..||+|++....    ....+.+.+|+.+++
T Consensus        53 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~-------------------~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~  113 (355)
T 1vzo_A           53 IENFELLKVLGTGAYGKVFLVRKISGHD-------------------TGKLYAMKVLKKATIVQKAKTTEHTRTERQVLE  113 (355)
T ss_dssp             GGGEEEEEEEEETTTEEEEEEEECSSTT-------------------TTCEEEEEEESEEEEEEEESSGGGCCCHHHHHH
T ss_pred             ccceEEEEEeccCCCEEEEEEEEcccCC-------------------CCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHH
Confidence            4799999999999999999999853211                   23467888765321    122345667889999


Q ss_pred             hC-CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCC
Q 024842          101 LF-SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLE  179 (262)
Q Consensus       101 ~l-~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~  179 (262)
                      .+ +||||+++++.+          ......+++|||+.+++|.+++.    ....+++..++.++.|++.||.|||+++
T Consensus       114 ~l~~h~~iv~~~~~~----------~~~~~~~lv~e~~~~~~L~~~l~----~~~~~~~~~~~~~~~qi~~aL~~LH~~~  179 (355)
T 1vzo_A          114 HIRQSPFLVTLHYAF----------QTETKLHLILDYINGGELFTHLS----QRERFTEHEVQIYVGEIVLALEHLHKLG  179 (355)
T ss_dssp             HHHTCTTBCCEEEEE----------EETTEEEEEECCCCSCBHHHHHH----HHSCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HccCCCceeEEEEEE----------eeCceEEEEeecCCCCCHHHHHH----HcCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            88 699999999887          33567999999999999999886    3345999999999999999999999998


Q ss_pred             CCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC------ccCcccCCcccchhhhhhhhhhhhhcCcccchhe
Q 024842          180 PPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF------ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQI  253 (262)
Q Consensus       180 ~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~------~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~  253 (262)
                        |+||||||+|||++.++    .+||+|||++.......      ..++..|.+||.+..-..   ......|||++|+
T Consensus       180 --ivH~Dlkp~NIll~~~~----~~kl~DfG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~---~~~~~~DvwslG~  250 (355)
T 1vzo_A          180 --IIYRDIKLENILLDSNG----HVVLTDFGLSKEFVADETERAYDFCGTIEYMAPDIVRGGDS---GHDKAVDWWSLGV  250 (355)
T ss_dssp             --CCCCCCCGGGEEECTTS----CEEESCSSEEEECCGGGGGGGCGGGSCCTTCCHHHHTTCC------CTHHHHHHHHH
T ss_pred             --cccCCCCHHHEEECCCC----cEEEeeCCCCeecccCCCCcccCcccCcCccChhhhcCCCC---CCCchhhHHHHHH
Confidence              99999999999998776    69999999998754322      246777888776542110   1112358888888


Q ss_pred             eheecccCC
Q 024842          254 LMRELMFGR  262 (262)
Q Consensus       254 ~~~~l~~G~  262 (262)
                      ++|+|++|+
T Consensus       251 il~ell~g~  259 (355)
T 1vzo_A          251 LMYELLTGA  259 (355)
T ss_dssp             HHHHHHHSS
T ss_pred             HHHHHHHCC
Confidence            888888874

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...

Probab=100.00  E-value=3.3e-33  Score=227.37  Aligned_cols=195  Identities=19%  Similarity=0.213  Sum_probs=151.4

Q ss_pred             ceeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHh
Q 024842           20 DVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVS   99 (262)
Q Consensus        20 ~~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l   99 (262)
                      ...+..++|++.+.||+|+||.||+|.+..+++                      .+++|.+..... ..+.+.+|+.++
T Consensus         7 ~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~----------------------~vaiK~~~~~~~-~~~~~~~E~~~l   63 (288)
T 3kfa_A            7 KWEMERTDITMKHKLGGGQYGEVYEGVWKKYSL----------------------TVAVKTLKEDTM-EVEEFLKEAAVM   63 (288)
T ss_dssp             TTBCCGGGEEEEEESGGGTTCSEEEEEEGGGTE----------------------EEEEEEECSCST-HHHHHHHHHHHH
T ss_pred             cccccccceeEEeecCCCCceeEEEeEecCCCE----------------------EEEEEecCcCHH-HHHHHHHHHHHH
Confidence            344678899999999999999999999987655                      577777654433 357788999999


Q ss_pred             hhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCC
Q 024842          100 SLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLE  179 (262)
Q Consensus       100 ~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~  179 (262)
                      +.++||||+++++++          ......+++||++.+++|.+++...  ....+++..++.++.|++.||.|||+.+
T Consensus        64 ~~l~h~~i~~~~~~~----------~~~~~~~~v~e~~~~~~L~~~~~~~--~~~~~~~~~~~~i~~~i~~~l~~lH~~~  131 (288)
T 3kfa_A           64 KEIKHPNLVQLLGVC----------TREPPFYIITEFMTYGNLLDYLREC--NRQEVSAVVLLYMATQISSAMEYLEKKN  131 (288)
T ss_dssp             HHCCCTTBCCEEEEE----------CSSSSEEEEEECCTTEEHHHHHHHC--CTTTSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HhCCCCCEeeEEEEE----------ccCCCEEEEEEcCCCCcHHHHHHhc--ccCCccHhHHHHHHHHHHHHHHHHHHCC
Confidence            999999999999987          4466789999999999999988632  2345999999999999999999999999


Q ss_pred             CCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccCc------cCcccCCcccchhhhhhhhhhhhhcCcccchhe
Q 024842          180 PPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKFA------LGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQI  253 (262)
Q Consensus       180 ~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~~------~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~  253 (262)
                        ++|+||||+||+++.++    .++|+|||++........      .++..|.+||.+....     .....|+|++|+
T Consensus       132 --i~H~dikp~Nil~~~~~----~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-----~~~~~Di~slG~  200 (288)
T 3kfa_A          132 --FIHRDLAARNCLVGENH----LVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNK-----FSIKSDVWAFGV  200 (288)
T ss_dssp             --CCCSCCSGGGEEECGGG----CEEECCCCGGGTSCSSSSEEETTEEECGGGCCHHHHHHCC-----CCHHHHHHHHHH
T ss_pred             --ccCCCCCcceEEEcCCC----CEEEccCccceeccCCccccccCCccccCcCChhhhccCC-----CCchhhHHHHHH
Confidence              99999999999998776    699999999986654321      2334566666432111     111245666666


Q ss_pred             eheeccc
Q 024842          254 LMRELMF  260 (262)
Q Consensus       254 ~~~~l~~  260 (262)
                      ++++|++
T Consensus       201 il~~ll~  207 (288)
T 3kfa_A          201 LLWEIAT  207 (288)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHh
Confidence            6666655

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*

Probab=100.00  E-value=9.1e-33  Score=225.27  Aligned_cols=198  Identities=16%  Similarity=0.227  Sum_probs=152.2

Q ss_pred             CceeecCCceEEEE-EeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc--chHHHHHHHHH
Q 024842           19 GDVWINENRYRILR-QLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ--NNEQLEMVREE   95 (262)
Q Consensus        19 ~~~~~~~~~y~~~~-~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~--~~~~~~~~~~E   95 (262)
                      .++.++.++|++.+ .||+|+||.||+|.+....                    .+..+++|.+...  .....+.+.+|
T Consensus         9 ~~~~~~~~~y~~~~~~lg~G~~g~Vy~~~~~~~~--------------------~~~~vavK~~~~~~~~~~~~~~~~~e   68 (291)
T 1xbb_A            9 KEVYLDRKLLTLEDKELGSGNFGTVKKGYYQMKK--------------------VVKTVAVKILKNEANDPALKDELLAE   68 (291)
T ss_dssp             --CBCCGGGEEEEEEEEEECSSEEEEEEEEECSS--------------------SEEEEEEEEEC-----CHHHHHHHHH
T ss_pred             ceeeecchhhhhccCccccccCeeeEeeeecCCC--------------------ceeeEEEEeecccccCHHHHHHHHHH
Confidence            45667788999999 9999999999999654321                    1346788877544  23345778999


Q ss_pred             HHHhhhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHH
Q 024842           96 IRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHM  175 (262)
Q Consensus        96 ~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~l  175 (262)
                      +.+++.++||||+++++++.           ....+++||++.+++|.+++.    ....+++..++.++.|++.||.||
T Consensus        69 ~~~l~~l~h~~i~~~~~~~~-----------~~~~~lv~e~~~~~~L~~~l~----~~~~~~~~~~~~i~~qi~~~l~~L  133 (291)
T 1xbb_A           69 ANVMQQLDNPYIVRMIGICE-----------AESWMLVMEMAELGPLNKYLQ----QNRHVKDKNIIELVHQVSMGMKYL  133 (291)
T ss_dssp             HHHHHTCCCTTBCCEEEEEE-----------SSSEEEEEECCTTEEHHHHHH----HCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCCEEEEEEEEC-----------CCCcEEEEEeCCCCCHHHHHH----hCcCCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998762           456899999999999999886    345599999999999999999999


Q ss_pred             HcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccCc--------cCcccCCcccchhhhhhhhhhhhhcCc
Q 024842          176 HSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKFA--------LGQRRYSCRNGLLSIVLHLSELLSCGT  247 (262)
Q Consensus       176 H~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~~--------~~~~~~~~~~d~~s~g~~~~e~~~~~~  247 (262)
                      |+.+  ++|+||||+||+++.++    .++|+|||++........        .++..|.+||.+....     .....|
T Consensus       134 H~~~--i~H~dikp~Nil~~~~~----~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-----~~~~~D  202 (291)
T 1xbb_A          134 EESN--FVHRDLAARNVLLVTQH----YAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYK-----FSSKSD  202 (291)
T ss_dssp             HHTT--EECSCCSGGGEEEEETT----EEEECCCTTCEECCTTCSEEEC----CCCGGGCCHHHHHHCE-----EEHHHH
T ss_pred             HhCC--eEcCCCCcceEEEeCCC----cEEEccCCcceeeccCCCcccccccCCCCceeeChHHhccCC-----CChhhh
Confidence            9998  99999999999998877    799999999987654321        2335577776543221     112357


Q ss_pred             ccchheeheeccc-CC
Q 024842          248 VRVIQILMRELMF-GR  262 (262)
Q Consensus       248 v~~~g~~~~~l~~-G~  262 (262)
                      +|++|+++++|++ |+
T Consensus       203 i~slG~il~~l~~~g~  218 (291)
T 1xbb_A          203 VWSFGVLMWEAFSYGQ  218 (291)
T ss_dssp             HHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHHhcCC
Confidence            7777777777776 53

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=1.3e-32  Score=223.89  Aligned_cols=198  Identities=18%  Similarity=0.237  Sum_probs=153.0

Q ss_pred             ceeecCCceEEEE-EeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc-chHHHHHHHHHHH
Q 024842           20 DVWINENRYRILR-QLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ-NNEQLEMVREEIR   97 (262)
Q Consensus        20 ~~~~~~~~y~~~~-~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~-~~~~~~~~~~E~~   97 (262)
                      .+.+..++|.+.+ .||+|+||.||+|.+.....                    +..+++|.+... .....+.+.+|+.
T Consensus         3 ~~~~~~~~~~i~~~~lg~G~~g~Vy~~~~~~~~~--------------------~~~vavK~~~~~~~~~~~~~~~~E~~   62 (287)
T 1u59_A            3 KLFLKRDNLLIADIELGCGNFGSVRQGVYRMRKK--------------------QIDVAIKVLKQGTEKADTEEMMREAQ   62 (287)
T ss_dssp             CCBCCGGGEEEEEEEEECCTTEEEEEEEEC---C--------------------CEEEEEEEECSSCCHHHHHHHHHHHH
T ss_pred             cccccHHHhhhhhccccccCceeEEEeEeccCCC--------------------cceEEEEecCCccchhHHHHHHHHHH
Confidence            4556678898887 99999999999998654321                    336888887654 3445678899999


Q ss_pred             HhhhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHc
Q 024842           98 VSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHS  177 (262)
Q Consensus        98 ~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~  177 (262)
                      +++.++||||+++++++.           ....+++||++.+++|.+++.   .....+++..++.++.|++.||.|||+
T Consensus        63 ~l~~l~h~~i~~~~~~~~-----------~~~~~lv~e~~~~~~L~~~l~---~~~~~~~~~~~~~~~~qi~~~l~~lH~  128 (287)
T 1u59_A           63 IMHQLDNPYIVRLIGVCQ-----------AEALMLVMEMAGGGPLHKFLV---GKREEIPVSNVAELLHQVSMGMKYLEE  128 (287)
T ss_dssp             HHHHCCCTTBCCEEEEEE-----------SSSEEEEEECCTTEEHHHHHT---TCTTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhCCCCCEeEEEEEec-----------CCCcEEEEEeCCCCCHHHHHH---hCCccCCHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999862           345899999999999999875   234569999999999999999999999


Q ss_pred             CCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC--------ccCcccCCcccchhhhhhhhhhhhhcCccc
Q 024842          178 LEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF--------ALGQRRYSCRNGLLSIVLHLSELLSCGTVR  249 (262)
Q Consensus       178 ~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~--------~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~  249 (262)
                      .+  ++|+||||+||+++.++    .++|+|||++.......        ..++..|.+||.+....     .....|+|
T Consensus       129 ~~--i~H~dlkp~Nili~~~~----~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-----~~~~~Di~  197 (287)
T 1u59_A          129 KN--FVHRDLAARNVLLVNRH----YAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRK-----FSSRSDVW  197 (287)
T ss_dssp             TT--EECCCCSGGGEEEEETT----EEEECCCTTCEECTTCSCEECCCCSSCCCGGGCCHHHHHHCE-----ECHHHHHH
T ss_pred             CC--EeeCCCchheEEEcCCC----CEEECcccceeeeccCcceeeccccccccccccCHHHhccCC-----CCchhhHH
Confidence            99  99999999999998776    79999999998764332        12345677776542211     11235777


Q ss_pred             chheeheeccc-CC
Q 024842          250 VIQILMRELMF-GR  262 (262)
Q Consensus       250 ~~g~~~~~l~~-G~  262 (262)
                      ++|+++++|++ |+
T Consensus       198 slG~il~ellt~g~  211 (287)
T 1u59_A          198 SYGVTMWEALSYGQ  211 (287)
T ss_dssp             HHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHcCCC
Confidence            77777777776 53

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=9.5e-33  Score=229.44  Aligned_cols=197  Identities=21%  Similarity=0.260  Sum_probs=145.4

Q ss_pred             eecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc-chHHHHHHHHHHHHhh
Q 024842           22 WINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ-NNEQLEMVREEIRVSS  100 (262)
Q Consensus        22 ~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~-~~~~~~~~~~E~~~l~  100 (262)
                      .+..++|++.+.||+|+||.||+|.+..++..                  ....|++|.+... .......+.+|+.+++
T Consensus        40 ~i~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~------------------~~~~vavK~~~~~~~~~~~~~~~~E~~~l~  101 (333)
T 1mqb_A           40 EIHPSCVTRQKVIGAGEFGEVYKGMLKTSSGK------------------KEVPVAIKTLKAGYTEKQRVDFLGEAGIMG  101 (333)
T ss_dssp             BCCTTTEEEEEEEEECSSSEEEEEEEEC---C------------------CEEEEEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred             cCChHHhhcccEEecCCCeEEEEEEEecCCCC------------------ccccEEEEEcCCCCCHHHHHHHHHHHHHHH
Confidence            45678999999999999999999998754331                  1235888887654 3344567889999999


Q ss_pred             hCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCC
Q 024842          101 LFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEP  180 (262)
Q Consensus       101 ~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~  180 (262)
                      .++||||+++++++          ......+++||++.+++|.+++..   ....+++..++.++.|++.||.|||+.+ 
T Consensus       102 ~l~h~~iv~~~~~~----------~~~~~~~lv~e~~~~~~L~~~l~~---~~~~~~~~~~~~i~~qi~~aL~~LH~~~-  167 (333)
T 1mqb_A          102 QFSHHNIIRLEGVI----------SKYKPMMIITEYMENGALDKFLRE---KDGEFSVLQLVGMLRGIAAGMKYLANMN-  167 (333)
T ss_dssp             TCCCTTBCCEEEEE----------CSSSSEEEEEECCTTEEHHHHHHH---TTTCSCHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred             hCCCCCCCcEEEEE----------ecCCCcEEEEeCCCCCcHHHHHHh---CCCCCCHHHHHHHHHHHHHHHHHHHhCC-
Confidence            99999999999987          446679999999999999998863   3356999999999999999999999999 


Q ss_pred             CeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC--------ccCcccCCcccchhhhhhhhhhhhhcCcccchh
Q 024842          181 PYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF--------ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQ  252 (262)
Q Consensus       181 ~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~--------~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g  252 (262)
                       ++||||||+||+++.++    .+||+|||++.......        ..++..|.+||.+....     .....|+|++|
T Consensus       168 -ivH~Dikp~NIl~~~~~----~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-----~~~~~Di~slG  237 (333)
T 1mqb_A          168 -YVHRDLAARNILVNSNL----VCKVSDFGLSRVLEDDPEATYTTSGGKIPIRWTAPEAISYRK-----FTSASDVWSFG  237 (333)
T ss_dssp             -CCCSCCCGGGEEECTTC----CEEECCCCC-----------------CCCGGGSCHHHHHSCC-----CCHHHHHHHHH
T ss_pred             -eeCCCCChheEEECCCC----cEEECCCCcchhhccccccccccCCCCccccccCchhcccCC-----CCchhhhHHHH
Confidence             99999999999998766    69999999998764322        12234566666432111     11124666666


Q ss_pred             eeheeccc
Q 024842          253 ILMRELMF  260 (262)
Q Consensus       253 ~~~~~l~~  260 (262)
                      +++++|++
T Consensus       238 ~il~ellt  245 (333)
T 1mqb_A          238 IVMWEVMT  245 (333)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHc
Confidence            66666665

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*

Probab=100.00  E-value=6e-33  Score=230.02  Aligned_cols=206  Identities=19%  Similarity=0.243  Sum_probs=150.1

Q ss_pred             cCCCCCceeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc-chHHHHHH
Q 024842           14 SVNGGGDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ-NNEQLEMV   92 (262)
Q Consensus        14 ~~~~~~~~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~-~~~~~~~~   92 (262)
                      ..+...-..+..++|++.+.||+|+||.||+|++..++..+                    .+++|.+... .....+.+
T Consensus        13 ~~~~~~~p~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~--------------------~v~iK~~~~~~~~~~~~~~   72 (327)
T 1fvr_A           13 NPDPTIYPVLDWNDIKFQDVIGEGNFGQVLKARIKKDGLRM--------------------DAAIKRMKEYASKDDHRDF   72 (327)
T ss_dssp             ---CCCSSBCCGGGCEEEEEEECGGGCEEEEEEEEETTEEE--------------------EEEEEEEECC------CHH
T ss_pred             CCCCcccccccHHHccceeeeecCCCceEEEEEEccCCccc--------------------ceeeeeeccccchHHHHHH
Confidence            34444445566789999999999999999999988765421                    2466665432 23344678


Q ss_pred             HHHHHHhhhC-CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhh------------hcCCCCCHH
Q 024842           93 REEIRVSSLF-SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQ------------TKKEFFSTS  159 (262)
Q Consensus        93 ~~E~~~l~~l-~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~------------~~~~~~~~~  159 (262)
                      .+|+.+++.+ +||||+++++++          ......+++||++.+++|.+++....            .....+++.
T Consensus        73 ~~E~~~l~~l~~hp~iv~~~~~~----------~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  142 (327)
T 1fvr_A           73 AGELEVLCKLGHHPNIINLLGAC----------EHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQ  142 (327)
T ss_dssp             HHHHHHHTTCCCCTTBCCEEEEE----------EETTEEEEEECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHH
T ss_pred             HHHHHHHHhccCCCchhhhceee----------eeCCceEEEEecCCCCCHHHHHHhcccccccccccccccccccCCHH
Confidence            8999999999 899999999987          33567999999999999999886432            123469999


Q ss_pred             HHHHHHHHHHHHHHHHHcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeecccc----CccCcccCCcccchhhh
Q 024842          160 DVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSK----FALGQRRYSCRNGLLSI  235 (262)
Q Consensus       160 ~~~~i~~ql~~~l~~lH~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~----~~~~~~~~~~~~d~~s~  235 (262)
                      .++.++.|++.||.|||+++  ++||||||+||+++.++    .+||+|||++......    ...++..|.+||.+..-
T Consensus       143 ~~~~i~~qi~~aL~~LH~~~--ivH~dlkp~NIl~~~~~----~~kL~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  216 (327)
T 1fvr_A          143 QLLHFAADVARGMDYLSQKQ--FIHRDLAARNILVGENY----VAKIADFGLSRGQEVYVKKTMGRLPVRWMAIESLNYS  216 (327)
T ss_dssp             HHHHHHHHHHHHHHHHHHTT--EECSCCSGGGEEECGGG----CEEECCTTCEESSCEECCC----CCTTTCCHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHhCC--ccCCCCccceEEEcCCC----eEEEcccCcCccccccccccCCCCCccccChhhhccc
Confidence            99999999999999999999  99999999999998776    6999999999743321    12345567777644221


Q ss_pred             hhhhhhhhhcCcccchheeheeccc
Q 024842          236 VLHLSELLSCGTVRVIQILMRELMF  260 (262)
Q Consensus       236 g~~~~e~~~~~~v~~~g~~~~~l~~  260 (262)
                      .     .....|+|++|+++|+|++
T Consensus       217 ~-----~~~~~Di~slG~il~ellt  236 (327)
T 1fvr_A          217 V-----YTTNSDVWSYGVLLWEIVS  236 (327)
T ss_dssp             E-----ECHHHHHHHHHHHHHHHHT
T ss_pred             c-----CCchhcchHHHHHHHHHHc
Confidence            1     1122466666666666665

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*

Probab=100.00  E-value=4.2e-33  Score=225.40  Aligned_cols=192  Identities=20%  Similarity=0.281  Sum_probs=149.4

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc---hHHHHHHHHHHHHhhh
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN---NEQLEMVREEIRVSSL  101 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~---~~~~~~~~~E~~~l~~  101 (262)
                      .++|++.+.||+|+||.||+|.+..+++                      .+++|.+....   ....+.+.+|+.+++.
T Consensus        10 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~----------------------~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~   67 (276)
T 2h6d_A           10 IGHYVLGDTLGVGTFGKVKIGEHQLTGH----------------------KVAVKILNRQKIRSLDVVGKIKREIQNLKL   67 (276)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEETTTCC----------------------EEEEEEEEHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             eccEEEEeeecCCCCeEEEEEEECCCCc----------------------eEEEEEeccccccchhHHHHHHHHHHHHhc
Confidence            5689999999999999999999876654                      67777664432   2234678899999999


Q ss_pred             CCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCC
Q 024842          102 FSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPP  181 (262)
Q Consensus       102 l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~  181 (262)
                      ++||||+++++++          ......+++||++.+++|.+++.    ....+++..++.++.|++.||.|||+++  
T Consensus        68 l~h~~i~~~~~~~----------~~~~~~~lv~e~~~~~~L~~~l~----~~~~~~~~~~~~~~~qi~~~l~~lH~~~--  131 (276)
T 2h6d_A           68 FRHPHIIKLYQVI----------STPTDFFMVMEYVSGGELFDYIC----KHGRVEEMEARRLFQQILSAVDYCHRHM--  131 (276)
T ss_dssp             CCCTTBCCEEEEE----------ECSSEEEEEEECCCSCBHHHHHH----HHCSCCHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             CCCCCEeEEEEEE----------ecCCeEEEEEeccCCCcHHHHHh----ccCCCCHHHHHHHHHHHHHHHHHHHHCC--
Confidence            9999999999987          33567999999999999999886    3345899999999999999999999999  


Q ss_pred             eeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC----ccCcccCCcccchhhhhhhhhhhhhcCcccchheehee
Q 024842          182 YAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRE  257 (262)
Q Consensus       182 ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~  257 (262)
                      ++|+||||+||+++.++    .++|+|||++.......    ..+++.|.+||.+..-...    ....|+|++|+++++
T Consensus       132 i~H~dl~p~Nil~~~~~----~~~l~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~----~~~~Di~slG~~l~~  203 (276)
T 2h6d_A          132 VVHRDLKPENVLLDAHM----NAKIADFGLSNMMSDGEFLRTSCGSPNYAAPEVISGRLYA----GPEVDIWSCGVILYA  203 (276)
T ss_dssp             SSCCCCCGGGEEECTTS----CEEECCCCGGGCCCC-------------CCTGGGTTSCCC----HHHHHHHHHHHHHHH
T ss_pred             CccCCCChhhEEECCCC----CEEEeecccccccCCCcceecccCCccccCHHHHcCCCCC----CccchHHHHHHHHHH
Confidence            99999999999998776    69999999998765432    2456677787765432211    123688888888888


Q ss_pred             cccCC
Q 024842          258 LMFGR  262 (262)
Q Consensus       258 l~~G~  262 (262)
                      |++|+
T Consensus       204 l~~g~  208 (276)
T 2h6d_A          204 LLCGT  208 (276)
T ss_dssp             HHHSS
T ss_pred             HHhCC
Confidence            88874

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}

Probab=100.00  E-value=1.1e-33  Score=234.19  Aligned_cols=191  Identities=25%  Similarity=0.295  Sum_probs=142.0

Q ss_pred             CceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHH-HHHHHHHHHHhhhCCC
Q 024842           26 NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQ-LEMVREEIRVSSLFSH  104 (262)
Q Consensus        26 ~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~-~~~~~~E~~~l~~l~h  104 (262)
                      ++|++.+.||+|+||.||+|++..+++                      .||+|++....... ...+.+|+.+++.++|
T Consensus         2 ~~y~~~~~lG~G~~g~V~~~~~~~~~~----------------------~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h   59 (324)
T 3mtl_A            2 ETYIKLDKLGEGTYATVYKGKSKLTDN----------------------LVALKEIRLEHEEGAPCTAIREVSLLKDLKH   59 (324)
T ss_dssp             CSEEEEEEEEECSSEEEEEEEETTTCC----------------------EEEEEEECC------CCCCCCCHHHHSCCCC
T ss_pred             CceEEEEEEcCCCCEEEEEEEECCCCc----------------------EEEEEEEecccccccchhHHHHHHHHHhcCC
Confidence            579999999999999999999887655                      56777665432211 1234568999999999


Q ss_pred             CCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeee
Q 024842          105 RNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAH  184 (262)
Q Consensus       105 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH  184 (262)
                      |||+++++++          ......+++||++. ++|.+++..   ....+++..++.++.|++.||.|||+.+  |+|
T Consensus        60 ~~iv~~~~~~----------~~~~~~~lv~e~~~-~~l~~~~~~---~~~~~~~~~~~~~~~qi~~aL~~LH~~~--ivH  123 (324)
T 3mtl_A           60 ANIVTLHDII----------HTEKSLTLVFEYLD-KDLKQYLDD---CGNIINMHNVKLFLFQLLRGLAYCHRQK--VLH  123 (324)
T ss_dssp             TTBCCEEEEE----------ECSSCEEEEEECCS-EEHHHHHHH---TTTCCCHHHHHHHHHHHHHHHHHHHHTT--EEE
T ss_pred             CCCCeeeeEE----------eeCCEEEEEecccc-cCHHHHHHh---cCCCCCHHHHHHHHHHHHHHHHHHHHCC--ccC
Confidence            9999999987          33567899999987 588877653   3456999999999999999999999999  999


Q ss_pred             cCCCCCcEEEecCCCCCCceEEeeccceeeccccC-----ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecc
Q 024842          185 NDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELM  259 (262)
Q Consensus       185 ~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~  259 (262)
                      |||||+||+++.++    .+||+|||++.....+.     ..++..|.+||.+....    ......|+||+|+++|+|+
T Consensus       124 ~Dikp~NIl~~~~~----~~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~aPE~~~~~~----~~~~~~DiwslG~il~~l~  195 (324)
T 3mtl_A          124 RDLKPQNLLINERG----ELKLADFGLARAKSIPTKTYDNEVVTLWYRPPDILLGST----DYSTQIDMWGVGCIFYEMA  195 (324)
T ss_dssp             SSCCGGGEEECTTC----CEEECSSSEEECC------------CGGGCCHHHHTTCC----CCCTHHHHHHHHHHHHHHH
T ss_pred             CCcCHHHEEECCCC----CEEEccCcccccccCCccccccccCcccccChhhhcCCC----CCCcHHHHHHHHHHHHHHH
Confidence            99999999998776    69999999998654322     23466666666543211    1112357777777777777


Q ss_pred             cCC
Q 024842          260 FGR  262 (262)
Q Consensus       260 ~G~  262 (262)
                      +|+
T Consensus       196 ~g~  198 (324)
T 3mtl_A          196 TGR  198 (324)
T ss_dssp             HSS
T ss_pred             hCC
Confidence            764

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*

Probab=100.00  E-value=9.9e-33  Score=225.63  Aligned_cols=196  Identities=22%  Similarity=0.243  Sum_probs=152.6

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc---------hHHHHHHHHH
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN---------NEQLEMVREE   95 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~---------~~~~~~~~~E   95 (262)
                      .++|++.+.||+|+||.||+|++..+++                      .|++|.+....         ....+.+.+|
T Consensus        16 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~----------------------~vavK~~~~~~~~~~~~~~~~~~~~~~~~e   73 (298)
T 1phk_A           16 YENYEPKEILGRGVSSVVRRCIHKPTCK----------------------EYAVKIIDVTGGGSFSAEEVQELREATLKE   73 (298)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTE----------------------EEEEEEEETTCSTTCCHHHHHHHHHHHHHH
T ss_pred             hhccceeeeecCCCceEEEEEEEcCcCc----------------------eEEEEEEecccccccCHHHHHHHHHHHHHH
Confidence            5799999999999999999999987655                      56777654322         2334677899


Q ss_pred             HHHhhhCC-CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHH
Q 024842           96 IRVSSLFS-HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKH  174 (262)
Q Consensus        96 ~~~l~~l~-h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~  174 (262)
                      +.+++.+. ||||+++++++          ......+++||++.+++|.+++.    ....+++..++.++.|++.||.|
T Consensus        74 ~~~l~~l~~h~~i~~~~~~~----------~~~~~~~lv~e~~~~~~L~~~l~----~~~~~~~~~~~~~~~qi~~~l~~  139 (298)
T 1phk_A           74 VDILRKVSGHPNIIQLKDTY----------ETNTFFFLVFDLMKKGELFDYLT----EKVTLSEKETRKIMRALLEVICA  139 (298)
T ss_dssp             HHHHHHHTTCTTBCCEEEEE----------ECSSEEEEEEECCTTCBHHHHHH----HHSSCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCCEeeeeeee----------ccCCeEEEEEeccCCCcHHHHHh----ccCCCCHHHHHHHHHHHHHHHHH
Confidence            99999995 99999999987          33677999999999999999886    34559999999999999999999


Q ss_pred             HHcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC----ccCcccCCcccchhhhhhh-hhhhhhcCccc
Q 024842          175 MHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF----ALGQRRYSCRNGLLSIVLH-LSELLSCGTVR  249 (262)
Q Consensus       175 lH~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~~~~~~~~d~~s~g~~-~~e~~~~~~v~  249 (262)
                      ||+.+  ++|+||||+||+++.++    .++|+|||++.......    ..++..|.+||.+...... ........|+|
T Consensus       140 lH~~~--i~H~dl~p~Nil~~~~~----~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~Di~  213 (298)
T 1phk_A          140 LHKLN--IVHRDLKPENILLDDDM----NIKLTDFGFSCQLDPGEKLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMW  213 (298)
T ss_dssp             HHHTT--EECSCCSGGGEEECTTC----CEEECCCTTCEECCTTCCBCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHH
T ss_pred             HHHCC--cccCCCCcceEEEcCCC----cEEEecccchhhcCCCcccccccCCccccCHHHhccccccccccCCcccccH
Confidence            99999  99999999999998776    69999999998765432    2456677777654321100 00111235788


Q ss_pred             chheeheecccCC
Q 024842          250 VIQILMRELMFGR  262 (262)
Q Consensus       250 ~~g~~~~~l~~G~  262 (262)
                      ++|+++++|++|+
T Consensus       214 slG~~l~~l~~g~  226 (298)
T 1phk_A          214 STGVIMYTLLAGS  226 (298)
T ss_dssp             HHHHHHHHHHHSS
T ss_pred             hHHHHHHHHHHCC
Confidence            8888888877774

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...

Probab=100.00  E-value=6.3e-33  Score=226.06  Aligned_cols=196  Identities=20%  Similarity=0.240  Sum_probs=143.8

Q ss_pred             ceeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc--chHHHHHHHHHHH
Q 024842           20 DVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ--NNEQLEMVREEIR   97 (262)
Q Consensus        20 ~~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~--~~~~~~~~~~E~~   97 (262)
                      ..-+..++|++.+.||+|+||.||+|++..                         .+++|.+...  .....+.+.+|+.
T Consensus        18 ~~ei~~~~y~~~~~lG~G~~g~Vy~~~~~~-------------------------~vavK~~~~~~~~~~~~~~~~~E~~   72 (289)
T 3og7_A           18 DWEIPDGQITVGQRIGSGSFGTVYKGKWHG-------------------------DVAVKMLNVTAPTPQQLQAFKNEVG   72 (289)
T ss_dssp             CCBCCTTSCEEEEEEEECSSEEEEEEESSS-------------------------EEEEEEESCSSCCHHHHHHHHHHHH
T ss_pred             CCccCccceeeeeEecCCCCeEEEEEEEcC-------------------------ceEEEEEeccCCCHHHHHHHHHHHH
Confidence            345668999999999999999999998642                         3677766543  3455678899999


Q ss_pred             HhhhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHc
Q 024842           98 VSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHS  177 (262)
Q Consensus        98 ~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~  177 (262)
                      +++.++||||++++++.           .....+++|+++.+++|.+++..   ....+++..++.++.|++.||.|||+
T Consensus        73 ~l~~l~h~~iv~~~~~~-----------~~~~~~lv~e~~~~~~L~~~l~~---~~~~~~~~~~~~i~~qi~~~L~~lH~  138 (289)
T 3og7_A           73 VLRKTRHVNILLFMGYS-----------TAPQLAIVTQWCEGSSLYHHLHA---SETKFEMKKLIDIARQTARGMDYLHA  138 (289)
T ss_dssp             HHTTCCCTTBCCEEEEE-----------CSSSCEEEEECCCEEEHHHHHTT---C---CCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhCCCCcEEEEEeec-----------cCCccEEEEEecCCCcHHHHHhh---ccCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999854           24568999999999999988742   34569999999999999999999999


Q ss_pred             CCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeecccc-------CccCcccCCcccchhhhhhhhhhhhhcCcccc
Q 024842          178 LEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSK-------FALGQRRYSCRNGLLSIVLHLSELLSCGTVRV  250 (262)
Q Consensus       178 ~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~-------~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~  250 (262)
                      .+  ++||||||+||+++.++    .++|+|||++......       ...++..|.+||.+......  ......|+||
T Consensus       139 ~~--i~H~Dlkp~Nil~~~~~----~~kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~--~~~~~~Di~s  210 (289)
T 3og7_A          139 KS--IIHRDLKSNNIFLHEDN----TVKIGDFGLATEKSRWSGSHQFEQLSGSILWMAPEVIRMQDSN--PYSFQSDVYA  210 (289)
T ss_dssp             TT--CCCSCCCGGGEEEETTT----EEEECCCC------------------CCCTTCCHHHHC----C--CSCHHHHHHH
T ss_pred             CC--cccccCccceEEECCCC----CEEEccceeccccccccccccccccCCCccccCchhhcccCCC--CCCcccchHH
Confidence            99  99999999999998776    7999999999755421       12466777777654311110  0111357777


Q ss_pred             hheeheecccCC
Q 024842          251 IQILMRELMFGR  262 (262)
Q Consensus       251 ~g~~~~~l~~G~  262 (262)
                      +|+++++|++|+
T Consensus       211 lG~il~el~~g~  222 (289)
T 3og7_A          211 FGIVLYELMTGQ  222 (289)
T ss_dssp             HHHHHHHHHHSS
T ss_pred             HHHHHHHHHHCC
Confidence            777777777764

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...

Probab=100.00  E-value=4.2e-33  Score=238.44  Aligned_cols=197  Identities=23%  Similarity=0.304  Sum_probs=147.1

Q ss_pred             CceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCCCC
Q 024842           26 NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSHR  105 (262)
Q Consensus        26 ~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~h~  105 (262)
                      .+|++.+.||+|+||.||+|++..+++                      .||+|++.....    ...+|+.+++.++||
T Consensus        54 ~~y~~~~~lG~G~fg~Vy~~~~~~~~~----------------------~vaiK~~~~~~~----~~~~E~~il~~l~hp  107 (420)
T 1j1b_A           54 VSYTDTKVIGNGSFGVVYQAKLCDSGE----------------------LVAIKKVLQDKR----FKNRELQIMRKLDHC  107 (420)
T ss_dssp             EEEEEEEEEEECSSEEEEEEEETTTCC----------------------EEEEEEEECCTT----SCCHHHHHHHTCCCT
T ss_pred             ceEEeeeEEeeCCCEEEEEEEECCCCc----------------------EEEEEEecccch----hHHHHHHHHHHcCCC
Confidence            479999999999999999999987655                      566666543321    223689999999999


Q ss_pred             CccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeeec
Q 024842          106 NLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHN  185 (262)
Q Consensus       106 ~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~  185 (262)
                      ||+++++++...    .........+++|||+.+ ++.+.+.........+++..++.++.||+.||.|||+++  |+||
T Consensus       108 niv~l~~~~~~~----~~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~--ivHr  180 (420)
T 1j1b_A          108 NIVRLRYFFYSS----GEKKDEVYLNLVLDYVPE-TVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFG--ICHR  180 (420)
T ss_dssp             TBCCEEEEEEEE----ETTTTEEEEEEEEECCCE-EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTTT--EECS
T ss_pred             CccceeeEEecc----CCCCcceeEEeehhcccc-cHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCC--cccc
Confidence            999998877421    011223446789998875 677766655555677999999999999999999999998  9999


Q ss_pred             CCCCCcEEEecCCCCCCceEEeeccceeeccccC----ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecccC
Q 024842          186 DVKPGNILITCRKGQPPLAILMDFGSARPAQSKF----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMFG  261 (262)
Q Consensus       186 dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~G  261 (262)
                      ||||+|||++.++.   .+||+|||++.......    ..++..|.+||.+....    ......|||++|+++|||++|
T Consensus       181 Dlkp~NILl~~~~~---~~kl~DFG~a~~~~~~~~~~~~~~t~~y~aPE~~~~~~----~~~~~~DiwSlG~il~ell~G  253 (420)
T 1j1b_A          181 DIKPQNLLLDPDTA---VLKLCDFGSAKQLVRGEPNVSYICSRYYRAPELIFGAT----DYTSSIDVWSAGCVLAELLLG  253 (420)
T ss_dssp             CCSGGGEEEETTTT---EEEECCCTTCEECCTTCCCCSCCSCTTSCCHHHHTTCS----SCCTHHHHHHHHHHHHHHHHS
T ss_pred             CCChhhEEEeCCCC---eEEeccchhhhhcccCCCceeeeeCCCcCCHHHHcCCC----CCCchhhhHHHHHHHHHHHhC
Confidence            99999999985542   68999999998764322    34666777777653221    111235788888888888877


Q ss_pred             C
Q 024842          262 R  262 (262)
Q Consensus       262 ~  262 (262)
                      +
T Consensus       254 ~  254 (420)
T 1j1b_A          254 Q  254 (420)
T ss_dssp             S
T ss_pred             C
Confidence            4

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}

Probab=100.00  E-value=1.1e-32  Score=227.38  Aligned_cols=201  Identities=21%  Similarity=0.301  Sum_probs=146.9

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCCC
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSH  104 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~h  104 (262)
                      .++|++.+.||+|+||.||+|.+..+++                      .||+|++........+.+.+|+.+++.++|
T Consensus        10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~----------------------~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h   67 (320)
T 2i6l_A           10 GSRYMDLKPLGCGGNGLVFSAVDNDCDK----------------------RVAIKKIVLTDPQSVKHALREIKIIRRLDH   67 (320)
T ss_dssp             TTTEEEEEECC-----CEEEEEETTTTE----------------------EEEEEEEECCSHHHHHHHHHHHHHHHTCCC
T ss_pred             CCceeEEEEeccCCCeEEEEEEECCCCe----------------------EEEEEEEecCChHHHHHHHHHHHHHHhcCC
Confidence            7899999999999999999999886654                      688888776666677889999999999999


Q ss_pred             CCccchhhhhHHHhhh----ccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCC
Q 024842          105 RNLLPLLDHAIIAVKA----NQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEP  180 (262)
Q Consensus       105 ~~i~~~~~~~~~~~~~----~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~  180 (262)
                      |||+++++++......    ..........+++||++. ++|.+++.     ...+++..++.++.|++.||.|||+++ 
T Consensus        68 ~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~~~-----~~~~~~~~~~~~~~qi~~~l~~lH~~~-  140 (320)
T 2i6l_A           68 DNIVKVFEILGPSGSQLTDDVGSLTELNSVYIVQEYME-TDLANVLE-----QGPLLEEHARLFMYQLLRGLKYIHSAN-  140 (320)
T ss_dssp             TTBCCEEEEECTTSCBCCC----CCSCSEEEEEEECCS-EEHHHHHT-----TCCCCHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred             CCeeEEEEeccccccccccccccccccCceeEEeeccC-CCHHHHhh-----cCCccHHHHHHHHHHHHHHHHHHHhCC-
Confidence            9999999876311000    000123467899999987 68988774     355999999999999999999999999 


Q ss_pred             CeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC--------ccCcccCCcccchhhhhhhhhhhhhcCcccchh
Q 024842          181 PYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF--------ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQ  252 (262)
Q Consensus       181 ~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~--------~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g  252 (262)
                       ++||||||+||+++.++.   .+||+|||++.......        ..++..|.+||.+....    ......|+|++|
T Consensus       141 -i~H~dlkp~Nil~~~~~~---~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~----~~~~~~Di~slG  212 (320)
T 2i6l_A          141 -VLHRDLKPANLFINTEDL---VLKIGDFGLARIMDPHYSHKGHLSEGLVTKWYRSPRLLLSPN----NYTKAIDMWAAG  212 (320)
T ss_dssp             -CBCCCCSGGGEEEETTTT---EEEECCCTTCBCC--------CCCGGGSCCTTCCHHHHHCTT----CCCHHHHHHHHH
T ss_pred             -EecCCCCHHHEEEcCCCC---eEEEccCccccccCCCcccccccccccccccccCcHHhcCcc----cCCchhhhHhHH
Confidence             999999999999974332   69999999998654321        23455677776543211    111235788888


Q ss_pred             eeheecccCC
Q 024842          253 ILMRELMFGR  262 (262)
Q Consensus       253 ~~~~~l~~G~  262 (262)
                      +++++|++|+
T Consensus       213 ~il~el~~g~  222 (320)
T 2i6l_A          213 CIFAEMLTGK  222 (320)
T ss_dssp             HHHHHHHHSS
T ss_pred             HHHHHHHhCC
Confidence            8888887774

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}

Probab=99.98  E-value=1e-32  Score=226.68  Aligned_cols=191  Identities=19%  Similarity=0.272  Sum_probs=143.8

Q ss_pred             ecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhC
Q 024842           23 INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLF  102 (262)
Q Consensus        23 ~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l  102 (262)
                      ++.++|++.+.||+|+||.||+|++..                        +.+++|++...  ...+.+.+|+.+++.+
T Consensus         5 i~~~~~~~~~~lg~G~~g~V~~~~~~~------------------------~~vavK~~~~~--~~~~~~~~E~~~l~~l   58 (307)
T 2eva_A            5 IDYKEIEVEEVVGRGAFGVVCKAKWRA------------------------KDVAIKQIESE--SERKAFIVELRQLSRV   58 (307)
T ss_dssp             CCGGGEEEEEEEECCSSSEEEEEEETT------------------------EEEEEEECSST--THHHHHHHHHHHHHHC
T ss_pred             CCHhHeeeeeEeecCCCceEEEEEECC------------------------eeEEEEEecCh--hHHHHHHHHHHHHhcC
Confidence            556899999999999999999998742                        25788876533  3446788999999999


Q ss_pred             CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHc---CC
Q 024842          103 SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHS---LE  179 (262)
Q Consensus       103 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~---~~  179 (262)
                      +||||+++++++.            +..+++|||+.+++|.+++.... ....+++..++.++.|++.||.|||+   ++
T Consensus        59 ~hp~iv~~~~~~~------------~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~~qi~~~l~~LH~~~~~~  125 (307)
T 2eva_A           59 NHPNIVKLYGACL------------NPVCLVMEYAEGGSLYNVLHGAE-PLPYYTAAHAMSWCLQCSQGVAYLHSMQPKA  125 (307)
T ss_dssp             CCTTBCCEEEBCT------------TTTEEEEECCTTCBHHHHHHCSS-SEECCCHHHHHHHHHHHHHHHHHHHTCSSSC
T ss_pred             CCCCcCeEEEEEc------------CCcEEEEEcCCCCCHHHHHhccC-CCCccCHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            9999999998762            34799999999999999886321 11247899999999999999999999   67


Q ss_pred             CCeeecCCCCCcEEEecCCCCCCceEEeeccceeecccc--CccCcccCCcccchhhhhhhhhhhhhcCcccchheehee
Q 024842          180 PPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSK--FALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRE  257 (262)
Q Consensus       180 ~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~--~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~  257 (262)
                        ++||||||+||+++.++.   .+||+|||++......  ...++..|.+||.+....     .....|||++|+++++
T Consensus       126 --ivH~dlkp~NIll~~~~~---~~kl~Dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~-----~~~~~Di~slG~il~e  195 (307)
T 2eva_A          126 --LIHRDLKPPNLLLVAGGT---VLKICDFGTACDIQTHMTNNKGSAAWMAPEVFEGSN-----YSEKCDVFSWGIILWE  195 (307)
T ss_dssp             --CCCCCCSGGGEEEETTTT---EEEECCCCC------------CCTTSSCHHHHTCCC-----CCTHHHHHHHHHHHHH
T ss_pred             --eecCCCChhHEEEeCCCC---EEEEcccccccccccccccCCCCCceEChhhhCCCC-----CCcHHHHHHHHHHHHH
Confidence              999999999999986652   4899999999765432  234677788777553321     1123577777777777


Q ss_pred             cccCC
Q 024842          258 LMFGR  262 (262)
Q Consensus       258 l~~G~  262 (262)
                      |++|+
T Consensus       196 l~~g~  200 (307)
T 2eva_A          196 VITRR  200 (307)
T ss_dssp             HHHTC
T ss_pred             HHHCC
Confidence            77764

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7

Probab=99.98  E-value=1.6e-32  Score=224.30  Aligned_cols=193  Identities=19%  Similarity=0.232  Sum_probs=144.8

Q ss_pred             ceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc-chHHHHHHHHHHHHhhhCCCC
Q 024842           27 RYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ-NNEQLEMVREEIRVSSLFSHR  105 (262)
Q Consensus        27 ~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~-~~~~~~~~~~E~~~l~~l~h~  105 (262)
                      .|++.+.||+|+||.||+|++..+++                   ....+++|.+... .....+.+.+|+.+++.++||
T Consensus        22 ~~~~~~~lg~G~~g~Vy~~~~~~~~~-------------------~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~   82 (298)
T 3pls_A           22 VTHSDRVIGKGHFGVVYHGEYIDQAQ-------------------NRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHP   82 (298)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEECSSS-------------------CEEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCT
T ss_pred             EEccCceeccCCCceEEEEEEecCCC-------------------ceeeeeeeeccccccHHHHHHHHHHHHHHHhCCCC
Confidence            56778999999999999999765543                   1235788877654 344567889999999999999


Q ss_pred             CccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeeec
Q 024842          106 NLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHN  185 (262)
Q Consensus       106 ~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~  185 (262)
                      ||+++++++.         ......+++|+++.+++|.+++..   ....+++..++.++.|++.||.|||+++  ++||
T Consensus        83 ~iv~~~~~~~---------~~~~~~~~v~e~~~~~~L~~~~~~---~~~~~~~~~~~~i~~qi~~~l~~LH~~~--i~H~  148 (298)
T 3pls_A           83 NVLALIGIML---------PPEGLPHVLLPYMCHGDLLQFIRS---PQRNPTVKDLISFGLQVARGMEYLAEQK--FVHR  148 (298)
T ss_dssp             TBCCCCEEEC---------CSSSCCEEEECCCTTCBHHHHHHC---TTCCCBHHHHHHHHHHHHHHHHHHHHTT--CCCS
T ss_pred             CeeeEEEEEe---------cCCCCcEEEEecccCCCHHHHHhc---cccCCCHHHHHHHHHHHHHHHHHHHhCC--cccC
Confidence            9999999873         223445899999999999998862   3456899999999999999999999999  9999


Q ss_pred             CCCCCcEEEecCCCCCCceEEeeccceeeccccC---------ccCcccCCcccchhhhhhhhhhhhhcCcccchheehe
Q 024842          186 DVKPGNILITCRKGQPPLAILMDFGSARPAQSKF---------ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMR  256 (262)
Q Consensus       186 dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~---------~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~  256 (262)
                      ||||+||+++.++    .+||+|||++.......         ..++..|.+||.+....+     ....|+|++|+++|
T Consensus       149 dikp~Nili~~~~----~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~-----~~~~Di~slG~il~  219 (298)
T 3pls_A          149 DLAARNCMLDESF----TVKVADFGLARDILDREYYSVQQHRHARLPVKWTALESLQTYRF-----TTKSDVWSFGVLLW  219 (298)
T ss_dssp             CCSGGGEEECTTC----CEEECCTTSSCTTTTGGGGCSCCSSCTTCGGGGSCHHHHTTCCC-----CHHHHHHHHHHHHH
T ss_pred             CCCcceEEEcCCC----cEEeCcCCCcccccCCcccccccCcCCCCCccccChhhhccCCC-----ChhhchhhHHHHHH
Confidence            9999999998776    69999999997553321         233445555553322111     11245666666666


Q ss_pred             ecccC
Q 024842          257 ELMFG  261 (262)
Q Consensus       257 ~l~~G  261 (262)
                      +|++|
T Consensus       220 ~l~~g  224 (298)
T 3pls_A          220 ELLTR  224 (298)
T ss_dssp             HHHHT
T ss_pred             HHhhC
Confidence            66553

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...

Probab=99.98  E-value=1.2e-32  Score=223.19  Aligned_cols=193  Identities=19%  Similarity=0.266  Sum_probs=147.7

Q ss_pred             ceeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHh
Q 024842           20 DVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVS   99 (262)
Q Consensus        20 ~~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l   99 (262)
                      +..+..++|++.+.||+|+||.||+|.+..                       +..+++|.+..... ..+.+.+|+.++
T Consensus         7 ~~~v~~~~y~~~~~lg~G~~g~Vy~~~~~~-----------------------~~~vavK~~~~~~~-~~~~~~~E~~~l   62 (279)
T 1qpc_A            7 EWEVPRETLKLVERLGAGQFGEVWMGYYNG-----------------------HTKVAVKSLKQGSM-SPDAFLAEANLM   62 (279)
T ss_dssp             TTBCCGGGEEEEEEEEEETTEEEEEEEETT-----------------------TEEEEEEEECTTSS-CHHHHHHHHHHH
T ss_pred             hcccCHHhhhheeeecCCCCeEEEEEEEcC-----------------------CcEEEEEEecCCcc-cHHHHHHHHHHH
Confidence            344567899999999999999999998652                       23578887654432 246788999999


Q ss_pred             hhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCC
Q 024842          100 SLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLE  179 (262)
Q Consensus       100 ~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~  179 (262)
                      +.++||||+++++++.           ....+++||++.+++|.+++....  ...+++..++.++.|++.||.|||+.+
T Consensus        63 ~~l~h~~i~~~~~~~~-----------~~~~~~v~e~~~~~~L~~~l~~~~--~~~~~~~~~~~i~~qi~~~l~~lH~~~  129 (279)
T 1qpc_A           63 KQLQHQRLVRLYAVVT-----------QEPIYIITEYMENGSLVDFLKTPS--GIKLTINKLLDMAAQIAEGMAFIEERN  129 (279)
T ss_dssp             HHCCCTTBCCEEEEEC-----------SSSCEEEEECCTTCBHHHHTTSHH--HHTCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HhCCCcCcceEEEEEc-----------CCCcEEEEecCCCCCHHHHHhcCC--CCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            9999999999998762           345899999999999999885322  125899999999999999999999999


Q ss_pred             CCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC------ccCcccCCcccchhhhhhhhhhhhhcCcccchhe
Q 024842          180 PPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF------ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQI  253 (262)
Q Consensus       180 ~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~------~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~  253 (262)
                        ++|+||||+||+++.++    .++|+|||++.......      ..++..|.+||.+....     .....|+|++|+
T Consensus       130 --i~H~dikp~Nil~~~~~----~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-----~~~~~Di~slG~  198 (279)
T 1qpc_A          130 --YIHRDLRAANILVSDTL----SCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGT-----FTIKSDVWSFGI  198 (279)
T ss_dssp             --EECSCCSGGGEEECTTS----CEEECCCTTCEECSSSCEECCTTCCCCTTTSCHHHHHHCE-----ECHHHHHHHHHH
T ss_pred             --eeccCCCHhhEEEcCCC----CEEECCCcccccccCcccccccCCCCccCccChhhhccCC-----CCchhhhHHHHH
Confidence              99999999999998766    69999999998765432      12344577776442111     111246666666


Q ss_pred             eheeccc
Q 024842          254 LMRELMF  260 (262)
Q Consensus       254 ~~~~l~~  260 (262)
                      ++++|++
T Consensus       199 il~el~~  205 (279)
T 1qpc_A          199 LLTEIVT  205 (279)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHh
Confidence            6666666

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A

Probab=99.98  E-value=1e-32  Score=232.03  Aligned_cols=195  Identities=20%  Similarity=0.248  Sum_probs=153.4

Q ss_pred             CceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc--------hHHHHHHHHHHH
Q 024842           26 NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN--------NEQLEMVREEIR   97 (262)
Q Consensus        26 ~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~--------~~~~~~~~~E~~   97 (262)
                      ++|++.+.||+|+||.||+|++..+++                      .||+|++....        ....+.+.+|+.
T Consensus        94 ~~y~~~~~lg~G~~g~Vy~a~~~~~g~----------------------~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~  151 (365)
T 2y7j_A           94 QKYDPKDVIGRGVSSVVRRCVHRATGH----------------------EFAVKIMEVTAERLSPEQLEEVREATRRETH  151 (365)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTCC----------------------EEEEEEEETTSSCCCHHHHHHHHHHHHHHHH
T ss_pred             hhcccceEEecCCCEEEEEEEECCCCc----------------------EEEEEEEEccccccCHHHHHHHHHHHHHHHH
Confidence            579999999999999999999876655                      56777554321        222456788999


Q ss_pred             HhhhC-CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHH
Q 024842           98 VSSLF-SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMH  176 (262)
Q Consensus        98 ~l~~l-~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH  176 (262)
                      +++.+ +||||+++++++          ......+++|||+.+++|.+++.    ....+++..++.++.|++.||.|||
T Consensus       152 ~l~~l~~hp~iv~~~~~~----------~~~~~~~lv~e~~~g~~L~~~l~----~~~~l~~~~~~~i~~qi~~~L~~LH  217 (365)
T 2y7j_A          152 ILRQVAGHPHIITLIDSY----------ESSSFMFLVFDLMRKGELFDYLT----EKVALSEKETRSIMRSLLEAVSFLH  217 (365)
T ss_dssp             HHHHHTTCTTBCCEEEEE----------EBSSEEEEEECCCTTCBHHHHHH----HHSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCCCCEeEEEEEE----------eeCCEEEEEEEeCCCCcHHHHHH----hcCCCCHHHHHHHHHHHHHHHHHHH
Confidence            99998 799999999987          34677999999999999999886    3455999999999999999999999


Q ss_pred             cCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC----ccCcccCCcccchhhhhh-hhhhhhhcCcccch
Q 024842          177 SLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF----ALGQRRYSCRNGLLSIVL-HLSELLSCGTVRVI  251 (262)
Q Consensus       177 ~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~~~~~~~~d~~s~g~-~~~e~~~~~~v~~~  251 (262)
                      +.+  ++|+||||+||+++.++    .++|+|||++.......    ..+++.|.+||.+..... .........|+||+
T Consensus       218 ~~g--i~H~Dlkp~NIl~~~~~----~ikl~DfG~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~sl  291 (365)
T 2y7j_A          218 ANN--IVHRDLKPENILLDDNM----QIRLSDFGFSCHLEPGEKLRELCGTPGYLAPEILKCSMDETHPGYGKEVDLWAC  291 (365)
T ss_dssp             HTT--EECSCCSGGGEEECTTC----CEEECCCTTCEECCTTCCBCCCCSCGGGCCHHHHHHTTCTTSCCBCTTHHHHHH
T ss_pred             hCC--eecCCCCHHHEEECCCC----CEEEEecCcccccCCCcccccCCCCCCccChhhccccccccCcCCCchhhHHhH
Confidence            998  99999999999998776    69999999998765432    356777777775432110 00012224688888


Q ss_pred             heeheecccCC
Q 024842          252 QILMRELMFGR  262 (262)
Q Consensus       252 g~~~~~l~~G~  262 (262)
                      |+++|+|++|+
T Consensus       292 G~il~ell~g~  302 (365)
T 2y7j_A          292 GVILFTLLAGS  302 (365)
T ss_dssp             HHHHHHHHHSS
T ss_pred             HHHHHHHHHCC
Confidence            88888888875

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...

Probab=99.98  E-value=1.7e-32  Score=227.48  Aligned_cols=194  Identities=19%  Similarity=0.300  Sum_probs=149.8

Q ss_pred             ceeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHh
Q 024842           20 DVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVS   99 (262)
Q Consensus        20 ~~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l   99 (262)
                      ..+...++|++.+.||+|+||.||+|++..+++                      .||+|.+....   .+.+.+|+.++
T Consensus        30 ~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~----------------------~vavK~~~~~~---~~~~~~E~~~l   84 (330)
T 3nsz_A           30 VEWGNQDDYQLVRKLGRGKYSEVFEAINITNNE----------------------KVVVKILKPVK---KKKIKREIKIL   84 (330)
T ss_dssp             CCCEEGGGEEEEEEEEECSSEEEEEEEETTTCC----------------------EEEEEEECSCC---HHHHHHHHHHH
T ss_pred             hcccCCCceEEEEEecccCCeEEEEEEECCCCc----------------------EEEEEEecccc---hHHHHHHHHHH
Confidence            344557899999999999999999999877655                      67777765433   35678899999


Q ss_pred             hhCC-CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcC
Q 024842          100 SLFS-HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSL  178 (262)
Q Consensus       100 ~~l~-h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~  178 (262)
                      +.++ ||||+++++++.        .......+++||++.+++|.+++.       .+++..++.++.|++.||.|||+.
T Consensus        85 ~~l~~~~~i~~~~~~~~--------~~~~~~~~lv~e~~~~~~l~~~~~-------~~~~~~~~~~~~qi~~~l~~lH~~  149 (330)
T 3nsz_A           85 ENLRGGPNIITLADIVK--------DPVSRTPALVFEHVNNTDFKQLYQ-------TLTDYDIRFYMYEILKALDYCHSM  149 (330)
T ss_dssp             HHHTTSTTBCCEEEEEE--------CTTTCCEEEEEECCCCCCHHHHGG-------GCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHcCCCCCEEEeeeeec--------cCCCCceEEEEeccCchhHHHHHH-------hCCHHHHHHHHHHHHHHHHHHHhC
Confidence            9997 999999999873        133566899999999999988763       289999999999999999999999


Q ss_pred             CCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC----ccCcccCCcccchhhhhhhhhhhhhcCcccchhee
Q 024842          179 EPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQIL  254 (262)
Q Consensus       179 ~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~  254 (262)
                      +  |+||||||+|||++.++.   .+||+|||++.......    ..++..|.+||.+.....    .....|+||+|++
T Consensus       150 ~--ivH~Dikp~Nil~~~~~~---~~kl~Dfg~a~~~~~~~~~~~~~~~~~y~aPE~~~~~~~----~~~~~DiwslG~i  220 (330)
T 3nsz_A          150 G--IMHRDVKPHNVMIDHEHR---KLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDYQM----YDYSLDMWSLGCM  220 (330)
T ss_dssp             T--EECCCCSGGGEEEETTTT---EEEECCCTTCEECCTTCCCCSCCSCGGGCCHHHHTTCCC----CCTHHHHHHHHHH
T ss_pred             C--eeeCCCCHHHEEEcCCCC---EEEEEeCCCceEcCCCCccccccccccccChhhhcCCCc----CCchhhHHHHHHH
Confidence            9  999999999999985542   69999999998765432    245556666664422111    1123577777777


Q ss_pred             heecccCC
Q 024842          255 MRELMFGR  262 (262)
Q Consensus       255 ~~~l~~G~  262 (262)
                      +++|++|+
T Consensus       221 l~~ll~g~  228 (330)
T 3nsz_A          221 LASMIFRK  228 (330)
T ss_dssp             HHHHHHTC
T ss_pred             HHHHHhCC
Confidence            77777764

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=99.98  E-value=7.1e-33  Score=239.32  Aligned_cols=193  Identities=21%  Similarity=0.280  Sum_probs=147.8

Q ss_pred             ceeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHh
Q 024842           20 DVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVS   99 (262)
Q Consensus        20 ~~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l   99 (262)
                      ...+..++|++.+.||+|+||.||+|.+..                       +..||+|++..... ..+.+.+|+.++
T Consensus       182 ~~~i~~~~~~~~~~lG~G~fg~V~~~~~~~-----------------------~~~vavK~~~~~~~-~~~~~~~E~~~l  237 (454)
T 1qcf_A          182 AWEIPRESLKLEKKLGAGQFGEVWMATYNK-----------------------HTKVAVKTMKPGSM-SVEAFLAEANVM  237 (454)
T ss_dssp             CSBCCGGGEEEEEEEECCSSEEEEEEEETT-----------------------TEEEEEEEECTTSB-CHHHHHHHHHHH
T ss_pred             ceeechHHeEEEEEcccCCceEEEEEEECC-----------------------ccEEEEEEecCCCc-cHHHHHHHHHHH
Confidence            345667899999999999999999998753                       23578887765432 347789999999


Q ss_pred             hhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCC
Q 024842          100 SLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLE  179 (262)
Q Consensus       100 ~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~  179 (262)
                      +.++||||+++++++.           ....+++|||+.+++|.+++....  ...+++..++.++.|++.||.|||+++
T Consensus       238 ~~l~h~~iv~l~~~~~-----------~~~~~lv~e~~~~g~L~~~l~~~~--~~~~~~~~~~~~~~qi~~~l~~LH~~~  304 (454)
T 1qcf_A          238 KTLQHDKLVKLHAVVT-----------KEPIYIITEFMAKGSLLDFLKSDE--GSKQPLPKLIDFSAQIAEGMAFIEQRN  304 (454)
T ss_dssp             TTCCCTTBCCEEEEEC-----------SSSCEEEECCCTTCBHHHHHHSHH--HHTCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             hhCCCCCEeeEEEEEe-----------CCccEEEEeecCCCcHHHHHHhcc--CCCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence            9999999999998762           456899999999999999986332  234889999999999999999999998


Q ss_pred             CCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC------ccCcccCCcccchhhhhhhhhhhhhcCcccchhe
Q 024842          180 PPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF------ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQI  253 (262)
Q Consensus       180 ~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~------~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~  253 (262)
                        |+||||||+|||++.++    .+||+|||++.......      ..++..|.+||.+..-.     .....||||+|+
T Consensus       305 --ivHrDlkp~Nill~~~~----~~kl~DFG~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-----~~~~~DvwslG~  373 (454)
T 1qcf_A          305 --YIHRDLRAANILVSASL----VCKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFGS-----FTIKSDVWSFGI  373 (454)
T ss_dssp             --CCCSSCSGGGEEECTTC----CEEECSTTGGGGBCCHHHHTTCSSSSCGGGSCHHHHHHCC-----CCHHHHHHHHHH
T ss_pred             --ccCCCCCHHHEEECCCC----cEEEeeCCCceEcCCCceeccCCCcccccccCHHHhccCC-----CCcHHHHHhHHH
Confidence              99999999999998766    69999999998654321      22344577776432111     112246666666


Q ss_pred             eheeccc
Q 024842          254 LMRELMF  260 (262)
Q Consensus       254 ~~~~l~~  260 (262)
                      ++|||++
T Consensus       374 ~l~el~t  380 (454)
T 1qcf_A          374 LLMEIVT  380 (454)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHh
Confidence            6666655

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C

Probab=99.98  E-value=9.8e-33  Score=234.69  Aligned_cols=194  Identities=20%  Similarity=0.245  Sum_probs=140.2

Q ss_pred             CceEEE-EEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHh-hhCC
Q 024842           26 NRYRIL-RQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVS-SLFS  103 (262)
Q Consensus        26 ~~y~~~-~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l-~~l~  103 (262)
                      ++|.+. +.||+|+||.||+|++..+++                      .||+|++...     ..+.+|+.++ +..+
T Consensus        61 ~~y~~~~~~LG~G~~g~V~~~~~~~~~~----------------------~vAiK~~~~~-----~~~~~E~~~~~~~~~  113 (400)
T 1nxk_A           61 DDYKVTSQVLGLGINGKVLQIFNKRTQE----------------------KFALKMLQDC-----PKARREVELHWRASQ  113 (400)
T ss_dssp             GTEEEEEEEEEEETTEEEEEEEETTTCC----------------------EEEEEEEECS-----HHHHHHHHHHHHHTT
T ss_pred             ccceeccceeeeccCeEEEEEEECCCCC----------------------EEEEEEeCcc-----hhHHHHHHHHHHhcC
Confidence            567776 789999999999999987655                      5777766432     3455777776 5568


Q ss_pred             CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCee
Q 024842          104 HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYA  183 (262)
Q Consensus       104 h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~iv  183 (262)
                      ||||+++++++..      ........|++|||+.+++|.+++...  ....+++..++.++.|++.||.|||+.+  |+
T Consensus       114 hp~iv~l~~~~~~------~~~~~~~~~lv~E~~~gg~L~~~l~~~--~~~~l~~~~~~~i~~qi~~aL~~LH~~~--iv  183 (400)
T 1nxk_A          114 CPHIVRIVDVYEN------LYAGRKCLLIVMECLDGGELFSRIQDR--GDQAFTEREASEIMKSIGEAIQYLHSIN--IA  183 (400)
T ss_dssp             STTBCCEEEEEEE------EETTEEEEEEEEECCCSEEHHHHHHCC-----CCBHHHHHHHHHHHHHHHHHHHHTT--EE
T ss_pred             CCCcceEeEEEee------cccCCcEEEEEEEeCCCCcHHHHHHHh--CCCCCCHHHHHHHHHHHHHHHHHHHHCC--cc
Confidence            9999999988731      012255689999999999999988631  1235999999999999999999999998  99


Q ss_pred             ecCCCCCcEEEecCCCCCCceEEeeccceeeccccC----ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecc
Q 024842          184 HNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELM  259 (262)
Q Consensus       184 H~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~  259 (262)
                      ||||||+|||++.++. ...+||+|||++.......    ..+++.|.+||.+..-.+     ....||||+|+++|+|+
T Consensus       184 HrDlkp~Nill~~~~~-~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-----~~~~DiwslG~il~ell  257 (400)
T 1nxk_A          184 HRDVKPENLLYTSKRP-NAILKLTDFGFAKETTSHNSLTTPCYTPYYVAPEVLGPEKY-----DKSCDMWSLGVIMYILL  257 (400)
T ss_dssp             CCCCCGGGEEESSSST-TCCEEECCCTTCEECC-----------CTTCCGGGSCCCCS-----SSHHHHHHHHHHHHHHH
T ss_pred             ccCcCcceEEEecCCC-CccEEEEecccccccCCCCccccCCCCCCccCHhhcCCCCC-----CCcccHHHHHHHHHHHH
Confidence            9999999999986321 1269999999998765322    245667777775432211     12356777777777777


Q ss_pred             cCC
Q 024842          260 FGR  262 (262)
Q Consensus       260 ~G~  262 (262)
                      +|+
T Consensus       258 ~g~  260 (400)
T 1nxk_A          258 CGY  260 (400)
T ss_dssp             HSS
T ss_pred             hCC
Confidence            664

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7

Probab=99.98  E-value=1e-32  Score=232.47  Aligned_cols=193  Identities=20%  Similarity=0.229  Sum_probs=138.6

Q ss_pred             CceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc-chHHHHHHHHHHHHhhhCCC
Q 024842           26 NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ-NNEQLEMVREEIRVSSLFSH  104 (262)
Q Consensus        26 ~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~-~~~~~~~~~~E~~~l~~l~h  104 (262)
                      ..|++.+.||+|+||.||+|++...+..                   ...+++|.+... .....+.+.+|+.+++.++|
T Consensus        89 ~~~~~~~~LG~G~fg~Vy~~~~~~~~~~-------------------~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~h  149 (373)
T 3c1x_A           89 LIVHFNEVIGRGHFGCVYHGTLLDNDGK-------------------KIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSH  149 (373)
T ss_dssp             EEEEEEEEEECCSSSEEEEEEEEETTTE-------------------EEEEEEEECCSCSCSHHHHHHHHHHTTSTTCCC
T ss_pred             ceeecCcEeeeCCCeEEEEEEEECCCCc-------------------EEEEEEEEcCCCCCHHHHHHHHHHHHHHHhCCC
Confidence            3688999999999999999997643221                   125677776543 34556789999999999999


Q ss_pred             CCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeee
Q 024842          105 RNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAH  184 (262)
Q Consensus       105 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH  184 (262)
                      |||+++++++.         ...+..+++|||+.+++|.+++..   ....+++..++.++.|++.||.|||+++  |+|
T Consensus       150 pnIv~~~~~~~---------~~~~~~~lv~e~~~~g~L~~~l~~---~~~~~~~~~~~~i~~qi~~aL~~LH~~~--ivH  215 (373)
T 3c1x_A          150 PNVLSLLGICL---------RSEGSPLVVLPYMKHGDLRNFIRN---ETHNPTVKDLIGFGLQVAKGMKFLASKK--FVH  215 (373)
T ss_dssp             TTBCCCCEEEC---------CCSSCCEEEEECCTTCBHHHHHHC---TTCCCBHHHHHHHHHHHHHHHHHHHHTT--CCC
T ss_pred             CCcceEEEEEE---------cCCCCeEEEEECCCCCCHHHHHhh---cccCCCHHHHHHHHHHHHHHHHHHHHCC--Eec
Confidence            99999999763         334578999999999999998852   3345889999999999999999999999  999


Q ss_pred             cCCCCCcEEEecCCCCCCceEEeeccceeeccccC---------ccCcccCCcccchhhhhhhhhhhhhcCcccchheeh
Q 024842          185 NDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF---------ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILM  255 (262)
Q Consensus       185 ~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~---------~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~  255 (262)
                      |||||+|||++.++    .+||+|||++.......         ..++..|.+||.+....     .....|+||+|+++
T Consensus       216 rDlkp~NIll~~~~----~~kL~DFG~a~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-----~~~~~DvwSlG~il  286 (373)
T 3c1x_A          216 RDLAARNCMLDEKF----TVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQTQK-----FTTKSDVWSFGVLL  286 (373)
T ss_dssp             SCCCGGGEEECTTC----CEEECCC---------------------CCGGGSCHHHHHHCC-----CCHHHHHHHHHHHH
T ss_pred             CccchheEEECCCC----CEEEeeccccccccccccccccccCCCCCcccccChHHhcCCC-----CCcHHHHHHHHHHH
Confidence            99999999998766    69999999998653321         12334566666432211     11124566666666


Q ss_pred             eeccc
Q 024842          256 RELMF  260 (262)
Q Consensus       256 ~~l~~  260 (262)
                      |+|++
T Consensus       287 ~ellt  291 (373)
T 3c1x_A          287 WELMT  291 (373)
T ss_dssp             HHHHT
T ss_pred             HHHHh
Confidence            66655

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...

Probab=99.98  E-value=1.5e-32  Score=227.02  Aligned_cols=203  Identities=18%  Similarity=0.218  Sum_probs=152.7

Q ss_pred             ceeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc-chHHHHHHHHHHHH
Q 024842           20 DVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ-NNEQLEMVREEIRV   98 (262)
Q Consensus        20 ~~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~-~~~~~~~~~~E~~~   98 (262)
                      ...+..++|++.+.||+|+||.||+|.+....+.                 ..+..+++|.+... .......+.+|+.+
T Consensus        19 ~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~-----------------~~~~~vaiK~~~~~~~~~~~~~~~~E~~~   81 (322)
T 1p4o_A           19 EWEVAREKITMSRELGQGSFGMVYEGVAKGVVKD-----------------EPETRVAIKTVNEAASMRERIEFLNEASV   81 (322)
T ss_dssp             TTBCCGGGEEEEEEEEECSSSEEEEEEEEEEETT-----------------EEEEEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             hhcchhhheeeeeEeccCCceEEEeeeecCccCC-----------------CCceEEEEEecccccCHHHHHHHHHHHHH
Confidence            3345578999999999999999999987632110                 02346888877644 33445678899999


Q ss_pred             hhhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhc------CCCCCHHHHHHHHHHHHHHH
Q 024842           99 SSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTK------KEFFSTSDVLQIFYQICAGL  172 (262)
Q Consensus        99 l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~------~~~~~~~~~~~i~~ql~~~l  172 (262)
                      ++.++||||+++++++          ......+++||++.+++|.+++......      ...+++..++.++.|++.||
T Consensus        82 l~~l~h~~i~~~~~~~----------~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l  151 (322)
T 1p4o_A           82 MKEFNCHHVVRLLGVV----------SQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGM  151 (322)
T ss_dssp             GGGCCCTTBCCEEEEE----------CSSSSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHH
T ss_pred             HHhcCCCCEeeeEEEE----------ccCCccEEEEEeCCCCcHHHHHHHhchhhccCCCCCCcCHHHHHHHHHHHHHHH
Confidence            9999999999999987          3456789999999999999988754321      14579999999999999999


Q ss_pred             HHHHcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-------ccCcccCCcccchhhhhhhhhhhhhc
Q 024842          173 KHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-------ALGQRRYSCRNGLLSIVLHLSELLSC  245 (262)
Q Consensus       173 ~~lH~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-------~~~~~~~~~~~d~~s~g~~~~e~~~~  245 (262)
                      .|||+++  |+||||||+||+++.++    .+||+|||++.......       ..++..|.+||.+..-.     ....
T Consensus       152 ~~lH~~~--i~H~dikp~NIli~~~~----~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-----~~~~  220 (322)
T 1p4o_A          152 AYLNANK--FVHRDLAARNCMVAEDF----TVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGV-----FTTY  220 (322)
T ss_dssp             HHHHHTT--CBCSCCSGGGEEECTTC----CEEECCTTCCCGGGGGGCEEGGGSSEECGGGCCHHHHHHCC-----CCHH
T ss_pred             HHHHHCC--CccCCCccceEEEcCCC----eEEECcCccccccccccccccccCCCCCCCccChhhhccCC-----CCch
Confidence            9999999  99999999999998776    69999999998654322       12345577766442211     1123


Q ss_pred             Ccccchheeheeccc
Q 024842          246 GTVRVIQILMRELMF  260 (262)
Q Consensus       246 ~~v~~~g~~~~~l~~  260 (262)
                      .|+|++|+++|+|++
T Consensus       221 ~Di~slG~il~el~~  235 (322)
T 1p4o_A          221 SDVWSFGVVLWEIAT  235 (322)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHh
Confidence            466666666666666

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*

Probab=99.98  E-value=2.5e-33  Score=229.54  Aligned_cols=200  Identities=22%  Similarity=0.293  Sum_probs=139.4

Q ss_pred             eeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc-hHHHHHHHHHHHHh
Q 024842           21 VWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN-NEQLEMVREEIRVS   99 (262)
Q Consensus        21 ~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~-~~~~~~~~~E~~~l   99 (262)
                      ..+..++|++.+.||+|+||.||+|.+..+++                      .|++|.+.... ....+.+.+|+.++
T Consensus        10 ~~i~~~~y~~~~~lg~G~~g~V~~~~~~~~~~----------------------~vaiK~~~~~~~~~~~~~~~~e~~~l   67 (303)
T 2vwi_A           10 WSINRDDYELQEVIGSGATAVVQAAYCAPKKE----------------------KVAIKRINLEKCQTSMDELLKEIQAM   67 (303)
T ss_dssp             ---CCCCCEEEEECC---CCCEEEEEC----C----------------------EEEEECCC----------------CC
T ss_pred             cccchhhhhhhheeccccceEEEEEEECCCCc----------------------EEEEEEEEhhhcchhHHHHHHHHHHH
Confidence            44668899999999999999999999876544                      57777665432 23346778899999


Q ss_pred             hhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhh----cCCCCCHHHHHHHHHHHHHHHHHH
Q 024842          100 SLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQT----KKEFFSTSDVLQIFYQICAGLKHM  175 (262)
Q Consensus       100 ~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~----~~~~~~~~~~~~i~~ql~~~l~~l  175 (262)
                      +.++||||+++++++.          .....+++||++.+++|.+++.....    ....+++..++.++.|++.||.||
T Consensus        68 ~~l~h~~i~~~~~~~~----------~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~l  137 (303)
T 2vwi_A           68 SQCHHPNIVSYYTSFV----------VKDELWLVMKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYL  137 (303)
T ss_dssp             CCCCCTTBCCEEEEEE----------SSSCEEEEEECCTTCBHHHHHHHHHHTTTTTTCSSCHHHHHHHHHHHHHHHHHH
T ss_pred             hhcCCCCEeeEEEEEe----------ecCCcEEEehhccCCchHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999873          35678999999999999998875432    234589999999999999999999


Q ss_pred             HcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeecccc----------CccCcccCCcccchhhhhhhhhhhhhc
Q 024842          176 HSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSK----------FALGQRRYSCRNGLLSIVLHLSELLSC  245 (262)
Q Consensus       176 H~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~----------~~~~~~~~~~~~d~~s~g~~~~e~~~~  245 (262)
                      |+.+  ++|+||||+||+++.++    .++|+|||++......          ...+++.|.+||.+....    .....
T Consensus       138 H~~~--i~H~dl~p~Nil~~~~~----~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~----~~~~~  207 (303)
T 2vwi_A          138 HKNG--QIHRDVKAGNILLGEDG----SVQIADFGVSAFLATGGDITRNKVRKTFVGTPCWMAPEVMEQVR----GYDFK  207 (303)
T ss_dssp             HHTT--CCCCCCSGGGEEECTTC----CEEECCCHHHHHCC---------------CCCTTCCHHHHHHHH----CCCTH
T ss_pred             HhCC--CCCCCCChhhEEEcCCC----CEEEEeccchheeccCCCccchhhhcccCCCccccCHHHhcccc----CCCch
Confidence            9998  99999999999998776    6999999998755322          124666787777553211    11223


Q ss_pred             CcccchheeheecccCC
Q 024842          246 GTVRVIQILMRELMFGR  262 (262)
Q Consensus       246 ~~v~~~g~~~~~l~~G~  262 (262)
                      .|+|++|+++++|++|+
T Consensus       208 ~Di~slG~il~~l~~g~  224 (303)
T 2vwi_A          208 ADIWSFGITAIELATGA  224 (303)
T ss_dssp             HHHHHHHHHHHHHHHSS
T ss_pred             hhHHHHHHHHHHHHhCC
Confidence            68888888888888774

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}

Probab=99.98  E-value=1.4e-32  Score=225.85  Aligned_cols=198  Identities=20%  Similarity=0.266  Sum_probs=144.9

Q ss_pred             cCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc-----hHHHHHHHHHHHH
Q 024842           24 NENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN-----NEQLEMVREEIRV   98 (262)
Q Consensus        24 ~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~-----~~~~~~~~~E~~~   98 (262)
                      ..++|++.+.||+|+||.||+|++..+++                      .||+|++....     ......+.+|+.+
T Consensus         7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~----------------------~vavK~~~~~~~~~~~~~~~~~~~~e~~~   64 (308)
T 3g33_A            7 ATSRYEPVAEIGVGAYGTVYKARDPHSGH----------------------FVALKSVRVPNGGGGGGGLPISTVREVAL   64 (308)
T ss_dssp             ---CCEEEEEECCSSSCCEEEEECTTTCC----------------------EEEEEEEEEECCCTTSSCCCHHHHHHHHH
T ss_pred             cccceEEEEEEecCCCeEEEEEEECCCCc----------------------EEEEEEEecccccccccccchhHHHHHHH
Confidence            36799999999999999999999877655                      56777664322     1112344566666


Q ss_pred             hhhC---CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHH
Q 024842           99 SSLF---SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHM  175 (262)
Q Consensus        99 l~~l---~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~l  175 (262)
                      ++.+   +||||+++++++...     ........+++||++. ++|.+++...  ....+++..++.++.|++.||+||
T Consensus        65 l~~l~~~~h~niv~~~~~~~~~-----~~~~~~~~~lv~e~~~-~~L~~~~~~~--~~~~~~~~~~~~i~~qi~~al~~l  136 (308)
T 3g33_A           65 LRRLEAFEHPNVVRLMDVCATS-----RTDREIKVTLVFEHVD-QDLRTYLDKA--PPPGLPAETIKDLMRQFLRGLDFL  136 (308)
T ss_dssp             HHHHHHHCCTTBCCEEEEEEEC-----CSSSEEEEEEEEECCC-CBHHHHHHTC--CTTCSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhcCCCCeEEeeeeeecc-----CCCCceeEEEEehhhh-cCHHHHHhhc--cCCCCCHHHHHHHHHHHHHHHHHH
Confidence            6555   599999999987420     1111235789999876 5998887632  123389999999999999999999


Q ss_pred             HcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC----ccCcccCCcccchhhhhhhhhhhhhcCcccch
Q 024842          176 HSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVI  251 (262)
Q Consensus       176 H~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~  251 (262)
                      |+++  |+||||||+||+++.++    .+||+|||++.......    ..+++.|.+||.+....     .....|+||+
T Consensus       137 H~~~--ivH~Dlkp~Nil~~~~~----~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~-----~~~~~Diwsl  205 (308)
T 3g33_A          137 HANC--IVHRDLKPENILVTSGG----TVKLADFGLARIYSYQMALTPVVVTLWYRAPEVLLQST-----YATPVDMWSV  205 (308)
T ss_dssp             HHTT--CCCSCCCTTTEEECTTS----CEEECSCSCTTTSTTCCCSGGGGCCCSSCCHHHHHTSC-----CCSTHHHHHH
T ss_pred             HHCC--cccCCCCHHHEEEcCCC----CEEEeeCccccccCCCcccCCccccccccCchHHcCCC-----CCchHHHHHH
Confidence            9999  99999999999998776    69999999997654332    35677888887653322     1224688888


Q ss_pred             heeheecccCC
Q 024842          252 QILMRELMFGR  262 (262)
Q Consensus       252 g~~~~~l~~G~  262 (262)
                      |+++|+|++|+
T Consensus       206 G~il~~l~~g~  216 (308)
T 3g33_A          206 GCIFAEMFRRK  216 (308)
T ss_dssp             HHHHHHTTTSS
T ss_pred             HHHHHHHHhCC
Confidence            88888888875

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*

Probab=99.98  E-value=1.7e-32  Score=224.95  Aligned_cols=191  Identities=20%  Similarity=0.283  Sum_probs=152.5

Q ss_pred             cCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc-hHHHHHHHHHHHHhhhC
Q 024842           24 NENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN-NEQLEMVREEIRVSSLF  102 (262)
Q Consensus        24 ~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~-~~~~~~~~~E~~~l~~l  102 (262)
                      ..+.|++.+.||+|+||.||+|++..+++                      .+++|.+.... ....+.+.+|+.+++.+
T Consensus        20 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~----------------------~vaiK~~~~~~~~~~~~~~~~e~~~l~~l   77 (303)
T 3a7i_A           20 PEELFTKLEKIGKGSFGEVFKGIDNRTQK----------------------VVAIKIIDLEEAEDEIEDIQQEITVLSQC   77 (303)
T ss_dssp             GGGTEEEEEEEEECSSSEEEEEEETTTCC----------------------EEEEEEEETTTCSTTHHHHHHHHHHHHHC
T ss_pred             hHHHHHHhhhhcccCCeEEEEEEECCCCc----------------------EEEEEEecccccHHHHHHHHHHHHHHHhC
Confidence            45789999999999999999999876654                      57777665432 33357788999999999


Q ss_pred             CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCe
Q 024842          103 SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPY  182 (262)
Q Consensus       103 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~i  182 (262)
                      +||||+++++.+.          .....+++||++.+++|.+++.     ...+++..++.++.|++.||.|||+.+  +
T Consensus        78 ~h~~i~~~~~~~~----------~~~~~~lv~e~~~~~~L~~~~~-----~~~~~~~~~~~~~~qi~~~l~~lH~~~--i  140 (303)
T 3a7i_A           78 DSPYVTKYYGSYL----------KDTKLWIIMEYLGGGSALDLLE-----PGPLDETQIATILREILKGLDYLHSEK--K  140 (303)
T ss_dssp             CCTTBCCEEEEEE----------ETTEEEEEEECCTTEEHHHHHT-----TSCCCHHHHHHHHHHHHHHHHHHHHTT--E
T ss_pred             CCCCEeEEEEEEe----------cCCeEEEEEEeCCCCcHHHHHh-----cCCCCHHHHHHHHHHHHHHHHHHHHCC--C
Confidence            9999999999873          3567899999999999999874     356999999999999999999999999  9


Q ss_pred             eecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-----ccCcccCCcccchhhhhhhhhhhhhcCcccchheehee
Q 024842          183 AHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRE  257 (262)
Q Consensus       183 vH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~  257 (262)
                      +|+||||+||+++.++    .++|+|||++.......     ..++..|.+||.+....     .....|+|++|+++++
T Consensus       141 ~H~dl~p~Nil~~~~~----~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-----~~~~~Di~slG~il~~  211 (303)
T 3a7i_A          141 IHRDIKAANVLLSEHG----EVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIKQSA-----YDSKADIWSLGITAIE  211 (303)
T ss_dssp             ECCCCSGGGEEECTTS----CEEECCCTTCEECBTTBCCBCCCCSCGGGCCHHHHTTCC-----BCTHHHHHHHHHHHHH
T ss_pred             ccCCCChheEEECCCC----CEEEeecccceecCccccccCccCCCcCccCHHHHhcCC-----CCchhhhHHHHHHHHH
Confidence            9999999999998776    69999999998765432     24566677776543221     1123577777777777


Q ss_pred             cccCC
Q 024842          258 LMFGR  262 (262)
Q Consensus       258 l~~G~  262 (262)
                      |++|+
T Consensus       212 l~~g~  216 (303)
T 3a7i_A          212 LARGE  216 (303)
T ss_dssp             HHHSS
T ss_pred             HccCC
Confidence            77764

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}

Probab=99.98  E-value=9e-33  Score=230.67  Aligned_cols=201  Identities=17%  Similarity=0.251  Sum_probs=144.9

Q ss_pred             ecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHH-----------HHH
Q 024842           23 INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQ-----------LEM   91 (262)
Q Consensus        23 ~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~-----------~~~   91 (262)
                      +..++|++.+.||+|+||.||+|++..++.                   ....+++|.........           ...
T Consensus        34 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~-------------------~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~   94 (345)
T 2v62_A           34 MEGNQWVLGKKIGSGGFGLIYLAFPTNKPE-------------------KDARHVVKVEYQENGPLFSELKFYQRVAKKD   94 (345)
T ss_dssp             TTSCEEEEEEEC------CEEEEEESSSCG-------------------GGCCEEEEEEECC-CHHHHHHHHHHHHCCHH
T ss_pred             ccCceEEEEeeEeecCCeEEEEEEecCCCC-------------------ccceEEEEeeecCCcchHHHHHHHHHHhhhH
Confidence            346899999999999999999999976322                   12356777655432111           123


Q ss_pred             HHHHHHHhhhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHH
Q 024842           92 VREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAG  171 (262)
Q Consensus        92 ~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~  171 (262)
                      +.+|+..++.++||||+++++++..      ........+++||++ +++|.+++.    ....+++..++.++.|++.|
T Consensus        95 ~~~e~~~~~~l~h~ni~~~~~~~~~------~~~~~~~~~lv~e~~-~~~L~~~l~----~~~~~~~~~~~~i~~qi~~a  163 (345)
T 2v62_A           95 CIKKWIERKQLDYLGIPLFYGSGLT------EFKGRSYRFMVMERL-GIDLQKISG----QNGTFKKSTVLQLGIRMLDV  163 (345)
T ss_dssp             HHHHHHHHHTCSCCCCCCEEEEEEE------ESSSCEEEEEEEECE-EEEHHHHCB----GGGBCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhccccccCcceeeccccc------ccCCCcEEEEEEecc-CCCHHHHHH----hcCCCCHHHHHHHHHHHHHH
Confidence            5678888999999999999998742      112256799999999 999999876    33369999999999999999


Q ss_pred             HHHHHcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeecccc------------CccCcccCCcccchhhhhhhh
Q 024842          172 LKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSK------------FALGQRRYSCRNGLLSIVLHL  239 (262)
Q Consensus       172 l~~lH~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~------------~~~~~~~~~~~~d~~s~g~~~  239 (262)
                      |.|||+.+  |+||||||+|||++.++..  .+||+|||++..+...            ...++..|.+||.+....   
T Consensus       164 L~~LH~~~--ivH~Dlkp~NIll~~~~~~--~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~---  236 (345)
T 2v62_A          164 LEYIHENE--YVHGDIKAANLLLGYKNPD--QVYLADYGLSYRYCPNGNHKQYQENPRKGHNGTIEFTSLDAHKGVA---  236 (345)
T ss_dssp             HHHHHHTT--EECSCCSGGGEEEESSSTT--SEEECCCTTCEESSGGGCCCCCCCCGGGCSCSCTTTCCHHHHHTCC---
T ss_pred             HHHHHhCC--eeCCCcCHHHEEEccCCCC--cEEEEeCCCceecccccccccchhccccccCCCccccCHHHhcCCC---
Confidence            99999998  9999999999999866422  5999999999876432            124667777777543221   


Q ss_pred             hhhhhcCcccchheeheecccCC
Q 024842          240 SELLSCGTVRVIQILMRELMFGR  262 (262)
Q Consensus       240 ~e~~~~~~v~~~g~~~~~l~~G~  262 (262)
                        .....|+||+|+++|+|++|+
T Consensus       237 --~~~~~Di~slG~il~ell~g~  257 (345)
T 2v62_A          237 --LSRRSDVEILGYCMLRWLCGK  257 (345)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHSS
T ss_pred             --CCchhhHHHHHHHHHHHHhCC
Confidence              122467888888888888774

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7

Probab=99.98  E-value=4.2e-33  Score=232.76  Aligned_cols=193  Identities=25%  Similarity=0.323  Sum_probs=144.2

Q ss_pred             cCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccch-----HHHHHHHHHHHH
Q 024842           24 NENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNN-----EQLEMVREEIRV   98 (262)
Q Consensus        24 ~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~-----~~~~~~~~E~~~   98 (262)
                      ..++|++.+.||+|+||.||+|++..+++                      .||+|++.....     ...+.+.+|+.+
T Consensus         8 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~----------------------~vavK~~~~~~~~~~~~~~~~~~~~E~~~   65 (346)
T 1ua2_A            8 RAKRYEKLDFLGEGQFATVYKARDKNTNQ----------------------IVAIKKIKLGHRSEAKDGINRTALREIKL   65 (346)
T ss_dssp             -----CEEEEEEEETTEEEEEEECSSCCS----------------------EEEEEEC------------CTHHHHHHHH
T ss_pred             HhcccEEEeEEeecCCEEEEEEEECCCCc----------------------EEEEEEEecCCcchhhhhhhHHHHHHHHH
Confidence            35789999999999999999999876655                      577776654321     112467789999


Q ss_pred             hhhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcC
Q 024842           99 SSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSL  178 (262)
Q Consensus        99 l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~  178 (262)
                      ++.++||||+++++++          ......+++||++.+ +|.+++.   .....+++..++.++.|++.||.|||+.
T Consensus        66 l~~l~h~~iv~~~~~~----------~~~~~~~lv~e~~~~-~l~~~~~---~~~~~~~~~~~~~~~~qi~~~l~~lH~~  131 (346)
T 1ua2_A           66 LQELSHPNIIGLLDAF----------GHKSNISLVFDFMET-DLEVIIK---DNSLVLTPSHIKAYMLMTLQGLEYLHQH  131 (346)
T ss_dssp             HHHCCCTTBCCEEEEE----------CCTTCCEEEEECCSE-EHHHHHT---TCCSSCCSSHHHHHHHHHHHHHHHHHHT
T ss_pred             HhhCCCCCCCeEEEEE----------eeCCceEEEEEcCCC-CHHHHHH---hcCcCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            9999999999999987          346678999999875 7777664   2345689999999999999999999999


Q ss_pred             CCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-----ccCcccCCcccchhhhhhhhhhhhhcCcccchhe
Q 024842          179 EPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQI  253 (262)
Q Consensus       179 ~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~  253 (262)
                      +  |+||||||+||+++.++    .+||+|||++.......     ..+++.|.+||.+.....    .....|+||+|+
T Consensus       132 ~--ivH~Dlkp~Nil~~~~~----~~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~----~~~~~DiwslG~  201 (346)
T 1ua2_A          132 W--ILHRDLKPNNLLLDENG----VLKLADFGLAKSFGSPNRAYTHQVVTRWYRAPELLFGARM----YGVGVDMWAVGC  201 (346)
T ss_dssp             T--CCCCCCCGGGEEECTTC----CEEECCCGGGSTTTSCCCCCCCSCCCCTTCCHHHHTTCSC----CCHHHHHHHHHH
T ss_pred             C--EECCCCCHHHEEEcCCC----CEEEEecccceeccCCcccCCcccccccccCchHhhCCCC----CCchhhhHhHHH
Confidence            9  99999999999998776    69999999998764322     245667777775532211    111357888888


Q ss_pred             eheecccCC
Q 024842          254 LMRELMFGR  262 (262)
Q Consensus       254 ~~~~l~~G~  262 (262)
                      ++|+|++|+
T Consensus       202 il~ell~g~  210 (346)
T 1ua2_A          202 ILAELLLRV  210 (346)
T ss_dssp             HHHHHHHSS
T ss_pred             HHHHHHHCC
Confidence            888887763

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*

Probab=99.98  E-value=1.1e-32  Score=232.42  Aligned_cols=202  Identities=13%  Similarity=0.113  Sum_probs=134.4

Q ss_pred             CceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc---hHHHHHHHHHHHHhhhC
Q 024842           26 NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN---NEQLEMVREEIRVSSLF  102 (262)
Q Consensus        26 ~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~---~~~~~~~~~E~~~l~~l  102 (262)
                      .+|++.+.||+|+||.||+|++..+++                      .||+|++....   ....+.+.+|+.+++.+
T Consensus        62 ~~y~~~~~lG~G~~g~V~~~~~~~~~~----------------------~vavK~~~~~~~~~~~~~~~~~~E~~~~~~l  119 (371)
T 3q60_A           62 RKLKLVEPLRVGDRSVVFLVRDVERLE----------------------DFALKVFTMGAENSRSELERLHEATFAAARL  119 (371)
T ss_dssp             EEEEEEEEEEECSSEEEEEEEETTTTE----------------------EEEEEEEECCSTTHHHHHHHHHHHHHHHHHH
T ss_pred             eeeeeeeeccCCCCEEEEEEEECCCCc----------------------eeEEEEEEecccccccHHHHHHHHHHHHHHh
Confidence            359999999999999999999887655                      67888776543   23455677785544444


Q ss_pred             --CCCCccchhhhhHH---Hhhhcc-----------CCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHH-----
Q 024842          103 --SHRNLLPLLDHAII---AVKANQ-----------EGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDV-----  161 (262)
Q Consensus       103 --~h~~i~~~~~~~~~---~~~~~~-----------~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~-----  161 (262)
                        +||||++++..+..   .+....           ........+++|||+. ++|.+++....   ..+++..+     
T Consensus       120 ~~~hp~iv~~~~~~~~p~d~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~---~~~~~~~~~~~~v  195 (371)
T 3q60_A          120 LGESPEEARDRRRLLLPSDAVAVQSQPPFAQLSPGQDDYAVANYLLLMPAAS-VDLELLFSTLD---FVYVFRGDEGILA  195 (371)
T ss_dssp             HC----------CBCCCCEEEEETTSCSSSBCSCC---CCEEEEEEEECCCS-EEHHHHHHHHH---HSCCCCHHHHHHH
T ss_pred             cccChhhhhhceeEEeeehheecCCCCCeeeccCCcccceeeeEEEEecCCC-CCHHHHHHHhc---cccchhhhhhhhh
Confidence              69999886644420   000000           0011255899999988 89999987542   22455555     


Q ss_pred             -HHHHHHHHHHHHHHHcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC--ccCcccCCcccchhhhhhh
Q 024842          162 -LQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF--ALGQRRYSCRNGLLSIVLH  238 (262)
Q Consensus       162 -~~i~~ql~~~l~~lH~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~--~~~~~~~~~~~d~~s~g~~  238 (262)
                       +.++.|++.||+|||+++  |+||||||+|||++.++    .+||+|||++.......  ..+++.|.+||.+....  
T Consensus       196 k~~i~~qi~~aL~~LH~~~--ivHrDikp~NIll~~~~----~~kL~DFG~a~~~~~~~~~~~~t~~y~aPE~~~~~~--  267 (371)
T 3q60_A          196 LHILTAQLIRLAANLQSKG--LVHGHFTPDNLFIMPDG----RLMLGDVSALWKVGTRGPASSVPVTYAPREFLNAST--  267 (371)
T ss_dssp             HHHHHHHHHHHHHHHHHTT--EEETTCSGGGEEECTTS----CEEECCGGGEEETTCEEEGGGSCGGGCCHHHHTCSE--
T ss_pred             HHHHHHHHHHHHHHHHHCC--CccCcCCHHHEEECCCC----CEEEEecceeeecCCCccCccCCcCCcChhhccCCC--
Confidence             677899999999999999  99999999999998776    69999999998775443  34557777777663200  


Q ss_pred             hhhhhhcCcccchheeheecccCC
Q 024842          239 LSELLSCGTVRVIQILMRELMFGR  262 (262)
Q Consensus       239 ~~e~~~~~~v~~~g~~~~~l~~G~  262 (262)
                       .......||||+|+++|+|++|+
T Consensus       268 -~~~~~~~DiwSlG~il~elltg~  290 (371)
T 3q60_A          268 -ATFTHALNAWQLGLSIYRVWCLF  290 (371)
T ss_dssp             -EECCHHHHHHHHHHHHHHHHHSS
T ss_pred             -CCcCccccHHHHHHHHHHHHhCC
Confidence             01112357888888888887774

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*

Probab=99.98  E-value=2.6e-32  Score=222.36  Aligned_cols=198  Identities=19%  Similarity=0.272  Sum_probs=145.3

Q ss_pred             CceeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc---chHHHHHHHHH
Q 024842           19 GDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ---NNEQLEMVREE   95 (262)
Q Consensus        19 ~~~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~---~~~~~~~~~~E   95 (262)
                      ....+..++|++.+.||+|+||.||+|++.....                   ....|++|.+...   .....+.+.+|
T Consensus        11 ~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~-------------------~~~~vavK~~~~~~~~~~~~~~~~~~e   71 (291)
T 1u46_A           11 LTCLIGEKDLRLLEKLGDGSFGVVRRGEWDAPSG-------------------KTVSVAVKCLKPDVLSQPEAMDDFIRE   71 (291)
T ss_dssp             CCEECCGGGEEEEEECC----CCCEEEEEECTTS-------------------CEEEEEEEC--------CHHHHHHHHH
T ss_pred             cccccchhHeeeeeeecCCCceeEEEEEeccCCC-------------------ceeEEEEEEEccCccCCHHHHHHHHHH
Confidence            3456678899999999999999999998754322                   1125788877643   33456788999


Q ss_pred             HHHhhhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHH
Q 024842           96 IRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHM  175 (262)
Q Consensus        96 ~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~l  175 (262)
                      +.+++.++||||+++++++.           ....+++||++.+++|.+++...   ...+++..++.++.|++.||.||
T Consensus        72 ~~~l~~l~h~~i~~~~~~~~-----------~~~~~~v~e~~~~~~L~~~l~~~---~~~~~~~~~~~~~~~i~~~l~~l  137 (291)
T 1u46_A           72 VNAMHSLDHRNLIRLYGVVL-----------TPPMKMVTELAPLGSLLDRLRKH---QGHFLLGTLSRYAVQVAEGMGYL  137 (291)
T ss_dssp             HHHHHHCCCTTBCCEEEEEC-----------SSSCEEEEECCTTCBHHHHHHHH---GGGSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCCcccEEEEEc-----------cCCceeeEecccCCCHHHHHHhc---cCCcCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999873           23488999999999999988632   34589999999999999999999


Q ss_pred             HcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC--------ccCcccCCcccchhhhhhhhhhhhhcCc
Q 024842          176 HSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF--------ALGQRRYSCRNGLLSIVLHLSELLSCGT  247 (262)
Q Consensus       176 H~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~--------~~~~~~~~~~~d~~s~g~~~~e~~~~~~  247 (262)
                      |+.+  ++|+||||+||+++.++    .+||+|||++.......        ..++..|.+||.+....     .....|
T Consensus       138 H~~~--i~H~dikp~Nili~~~~----~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-----~~~~~D  206 (291)
T 1u46_A          138 ESKR--FIHRDLAARNLLLATRD----LVKIGDFGLMRALPQNDDHYVMQEHRKVPFAWCAPESLKTRT-----FSHASD  206 (291)
T ss_dssp             HHTT--EECSCCCGGGEEEEETT----EEEECCCTTCEECCC-CCEEEC-----CCGGGCCHHHHHHCE-----EEHHHH
T ss_pred             HhCC--cccCCCchheEEEcCCC----CEEEccccccccccccccchhhhccCCCCceeeCchhhcCCC-----CCchhh
Confidence            9998  99999999999998777    79999999998765332        12344577776443221     112356


Q ss_pred             ccchheeheeccc
Q 024842          248 VRVIQILMRELMF  260 (262)
Q Consensus       248 v~~~g~~~~~l~~  260 (262)
                      +|++|+++++|++
T Consensus       207 i~slG~il~~l~~  219 (291)
T 1u46_A          207 TWMFGVTLWEMFT  219 (291)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHh
Confidence            7777777777766

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*

Probab=99.98  E-value=1.8e-32  Score=222.51  Aligned_cols=199  Identities=22%  Similarity=0.283  Sum_probs=151.1

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCCC
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSH  104 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~h  104 (262)
                      .++|++.+.||+|+||.||+|.+..+++                      .+++|.+....    +.+.+|+.+++.++|
T Consensus        10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~----------------------~vavK~~~~~~----~~~~~e~~~l~~l~h   63 (284)
T 2a19_B           10 GMDFKEIELIGSGGFGQVFKAKHRIDGK----------------------TYVIKRVKYNN----EKAEREVKALAKLDH   63 (284)
T ss_dssp             HHHEEEEEEEECSSSCCEEEEEETTTCC----------------------EEEEEEEECCS----GGGHHHHHHHHHCCC
T ss_pred             ccccceeeeeccCCceEEEEEEEcCCCe----------------------EEEEEEecccc----HHHHHHHHHHHhCCC
Confidence            5689999999999999999999876554                      67777765543    245689999999999


Q ss_pred             CCccchhhhhHHHh------hhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcC
Q 024842          105 RNLLPLLDHAIIAV------KANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSL  178 (262)
Q Consensus       105 ~~i~~~~~~~~~~~------~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~  178 (262)
                      |||+++++++....      ............+++||++.+++|.+++...  ....+++..++.++.|++.||.|||+.
T Consensus        64 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~i~~qi~~~l~~lH~~  141 (284)
T 2a19_B           64 VNIVHYNGCWDGFDYDPETSSKNSSRSKTKCLFIQMEFCDKGTLEQWIEKR--RGEKLDKVLALELFEQITKGVDYIHSK  141 (284)
T ss_dssp             TTBCCEEEEEEEEEEC---------CCEEEEEEEEECCCCSCBHHHHHHHG--GGSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCEEEEeeeEeccccCcccccccccccCcceEEEEEeccCCCCHHHHHhhc--cCCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            99999998762100      0000012245689999999999999998643  234599999999999999999999999


Q ss_pred             CCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC----ccCcccCCcccchhhhhhhhhhhhhcCcccchhee
Q 024842          179 EPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQIL  254 (262)
Q Consensus       179 ~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~  254 (262)
                      +  ++|+||||+||+++.++    .++|+|||++.......    ..+++.|.+||.+....     .....|+|++|++
T Consensus       142 ~--i~H~dlkp~Nil~~~~~----~~kl~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-----~~~~~Di~slG~i  210 (284)
T 2a19_B          142 K--LINRDLKPSNIFLVDTK----QVKIGDFGLVTSLKNDGKRTRSKGTLRYMSPEQISSQD-----YGKEVDLYALGLI  210 (284)
T ss_dssp             T--EECSCCSGGGEEEEETT----EEEECCCTTCEESSCCSCCCCCCSCCTTSCHHHHHCSC-----CCTHHHHHHHHHH
T ss_pred             C--eeeccCCHHHEEEcCCC----CEEECcchhheeccccccccccCCcccccChhhhccCC-----CcchhhhHHHHHH
Confidence            8  99999999999998777    79999999998765432    34667777777543221     1123577777777


Q ss_pred             heecccCC
Q 024842          255 MRELMFGR  262 (262)
Q Consensus       255 ~~~l~~G~  262 (262)
                      +++|++|+
T Consensus       211 l~~l~~~~  218 (284)
T 2a19_B          211 LAELLHVC  218 (284)
T ss_dssp             HHHHHSCC
T ss_pred             HHHHHhcC
Confidence            77777763

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...

Probab=99.98  E-value=1.1e-32  Score=227.02  Aligned_cols=204  Identities=18%  Similarity=0.238  Sum_probs=151.6

Q ss_pred             ceeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc-hHHHHHHHHHHHH
Q 024842           20 DVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN-NEQLEMVREEIRV   98 (262)
Q Consensus        20 ~~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~-~~~~~~~~~E~~~   98 (262)
                      ...+..++|++.+.||+|+||.||+|++......                 ..+..|++|.+.... ....+.+.+|+.+
T Consensus        21 ~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~-----------------~~~~~vavK~~~~~~~~~~~~~~~~E~~~   83 (316)
T 2xir_A           21 KWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKT-----------------ATCRTVAVKMLKEGATHSEHRALMSELKI   83 (316)
T ss_dssp             HHBCCGGGEEEEEEEEECSSEEEEEEEEESSSST-----------------TCEEEEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred             ceecchhheeeeeEEcCCCceeEEEEEEecCCcc-----------------ccceEEEEEecccCCCcHHHHHHHHHHHH
Confidence            3446678999999999999999999987542211                 134578888876543 3345678899999


Q ss_pred             hhhC-CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhc------------CCCCCHHHHHHHH
Q 024842           99 SSLF-SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTK------------KEFFSTSDVLQIF  165 (262)
Q Consensus        99 l~~l-~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~------------~~~~~~~~~~~i~  165 (262)
                      ++.+ +||||+++++++.         ......+++||++.+++|.+++......            ...+++..++.++
T Consensus        84 l~~l~~hp~iv~~~~~~~---------~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (316)
T 2xir_A           84 LIHIGHHLNVVNLLGACT---------KPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYS  154 (316)
T ss_dssp             HHHHCCCTTBCCEEEEEC---------CTTSCCEEEEECCTTEEHHHHHHTCTTSEECC-------CTTCEEHHHHHHHH
T ss_pred             HHhcccCCCeeeEEEEEe---------cCCCceEEEEEcCCCCcHHHHHHhcccccccccccchhhhccccCHHHHHHHH
Confidence            9999 6899999999873         2244589999999999999998743221            1228899999999


Q ss_pred             HHHHHHHHHHHcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-------ccCcccCCcccchhhhhhh
Q 024842          166 YQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-------ALGQRRYSCRNGLLSIVLH  238 (262)
Q Consensus       166 ~ql~~~l~~lH~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-------~~~~~~~~~~~d~~s~g~~  238 (262)
                      .|++.||.|||+.+  ++||||||+||+++.++    .+||+|||++.......       ..++..|.+||.+....  
T Consensus       155 ~qi~~al~~lH~~~--i~H~dikp~Nil~~~~~----~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~--  226 (316)
T 2xir_A          155 FQVAKGMEFLASRK--CIHRDLAARNILLSEKN----VVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRV--  226 (316)
T ss_dssp             HHHHHHHHHHHHTT--CCCSCCSGGGEEECGGG----CEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCC--
T ss_pred             HHHHHHHHHHHhCC--cccccCccceEEECCCC----CEEECCCccccccccCccceeccCCCcceeecCchhhcccc--
Confidence            99999999999998  99999999999998776    69999999998654322       23445677776442211  


Q ss_pred             hhhhhhcCcccchheeheeccc
Q 024842          239 LSELLSCGTVRVIQILMRELMF  260 (262)
Q Consensus       239 ~~e~~~~~~v~~~g~~~~~l~~  260 (262)
                         .....|+|++|+++|+|++
T Consensus       227 ---~~~~~Di~slG~il~~l~t  245 (316)
T 2xir_A          227 ---YTIQSDVWSFGVLLWEIFS  245 (316)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHT
T ss_pred             ---ccchhHHHHHHHHHHHHHh
Confidence               1112466666666666665

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}

Probab=99.98  E-value=1.4e-32  Score=227.50  Aligned_cols=208  Identities=18%  Similarity=0.235  Sum_probs=151.1

Q ss_pred             ceeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHh
Q 024842           20 DVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVS   99 (262)
Q Consensus        20 ~~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l   99 (262)
                      ......++|++.+.||+|+||.||+|++..+++                      .+++|.+..... ..+.+.+|+.++
T Consensus        18 ~l~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~----------------------~vaiK~~~~~~~-~~~~~~~e~~~l   74 (326)
T 2x7f_A           18 ALRDPAGIFELVELVGNGTYGQVYKGRHVKTGQ----------------------LAAIKVMDVTGD-EEEEIKQEINML   74 (326)
T ss_dssp             CCCCCTTTEEEEEEEEEETTEEEEEEEETTTCC----------------------EEEEEEEECCSS-TTHHHHHHHHHH
T ss_pred             hccCCCCcEEEEEEeccCCCEEEEEEEECCCCC----------------------eEEEEEEecCcc-cHHHHHHHHHHH
Confidence            333457899999999999999999999876654                      577776654332 235678899999


Q ss_pred             hhC-CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcC
Q 024842          100 SLF-SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSL  178 (262)
Q Consensus       100 ~~l-~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~  178 (262)
                      +.+ +||||+++++++...    .........+++||++.+++|.+++....  ...+++..++.++.|++.||.|||+.
T Consensus        75 ~~l~~h~~i~~~~~~~~~~----~~~~~~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~i~~qi~~~l~~lH~~  148 (326)
T 2x7f_A           75 KKYSHHRNIATYYGAFIKK----NPPGMDDQLWLVMEFCGAGSVTDLIKNTK--GNTLKEEWIAYICREILRGLSHLHQH  148 (326)
T ss_dssp             HHHCCSTTBCCEEEEEEEC----C--CCCCEEEEEEECCTTEEHHHHHHHSG--GGCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HhccCCCCeeeeeeEEeec----cCccccceEEEEEEcCCCCcHHHHHHhcc--cCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            988 799999999987421    00112467899999999999999887432  34589999999999999999999999


Q ss_pred             CCCeeecCCCCCcEEEecCCCCCCceEEeeccceeecccc-----CccCcccCCcccchhhhhhhhhhhhhcCcccchhe
Q 024842          179 EPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSK-----FALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQI  253 (262)
Q Consensus       179 ~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~-----~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~  253 (262)
                      +  ++|+||||+||+++.++    .++|+|||++......     ...++..|.+||.+..............|+|++|+
T Consensus       149 ~--ivH~dlkp~NIl~~~~~----~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~  222 (326)
T 2x7f_A          149 K--VIHRDIKGQNVLLTENA----EVKLVDFGVSAQLDRTVGRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGI  222 (326)
T ss_dssp             T--CCCCCCSGGGEEECTTC----CEEECCCTTTC-------------CCGGGCCHHHHC--------CCTTHHHHHHHH
T ss_pred             C--ccccCCcHHHEEEcCCC----CEEEeeCcCceecCcCccccccccCCccccChhhhccccccCcCCCccchHHHHHH
Confidence            8  99999999999998766    6999999998865432     22466677777755321111111222467888888


Q ss_pred             eheecccCC
Q 024842          254 LMRELMFGR  262 (262)
Q Consensus       254 ~~~~l~~G~  262 (262)
                      ++|+|++|+
T Consensus       223 il~~l~~g~  231 (326)
T 2x7f_A          223 TAIEMAEGA  231 (326)
T ss_dssp             HHHHHHHSS
T ss_pred             HHHHHHhCC
Confidence            888887774

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}

Probab=99.98  E-value=1.2e-32  Score=230.40  Aligned_cols=207  Identities=14%  Similarity=0.135  Sum_probs=148.7

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCCC
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSH  104 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~h  104 (262)
                      +++|++.+.||+|+||.||+|++..+......              ..+..||+|.+...     +.+.+|+.+++.++|
T Consensus        41 ~~~y~~~~~lg~G~~g~Vy~~~~~~t~~~~~~--------------~~~~~vavK~~~~~-----~~~~~E~~~l~~l~h  101 (352)
T 2jii_A           41 GRQWKLKSFQTRDNQGILYEAAPTSTLTCDSG--------------PQKQKFSLKLDAKD-----GRLFNEQNFFQRAAK  101 (352)
T ss_dssp             SCEEEEEEEEEEETTEEEEEEEECC-------------------------CEEEEEEETT-----STHHHHHHHHHHHCC
T ss_pred             CCeEEEEEEecCCCCeEEEEEeecCCcccccc--------------ccCceEEEEEeccc-----chHHHHHHHHHHhcc
Confidence            58999999999999999999998865321110              02447888877544     357789999999999


Q ss_pred             CCccchhhhhHHHhh-----hccCC-CCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcC
Q 024842          105 RNLLPLLDHAIIAVK-----ANQEG-SWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSL  178 (262)
Q Consensus       105 ~~i~~~~~~~~~~~~-----~~~~~-~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~  178 (262)
                      |||+++++.+.....     ..... ......+++||++ +++|.+++....  ...+++..++.++.|++.||.|||++
T Consensus       102 ~niv~~~~~~~~~~~~~i~~~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~--~~~l~~~~~~~i~~qi~~~L~~LH~~  178 (352)
T 2jii_A          102 PLQVNKWKKLYSTPLLAIPTCMGFGVHQDKYRFLVLPSL-GRSLQSALDVSP--KHVLSERSVLQVACRLLDALEFLHEN  178 (352)
T ss_dssp             HHHHHHHHHHTTCTTCSCCCCCEEEEETTTEEEEEEECC-CEEHHHHHHHSG--GGCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cchhhhhhhhccCCccCccchhhccccCCcEEEEEecCC-CcCHHHHHHhCC--cCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            999997765421000     00000 1246789999999 999999987321  35699999999999999999999999


Q ss_pred             CCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC------------ccCcccCCcccchhhhhhhhhhhhhcC
Q 024842          179 EPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF------------ALGQRRYSCRNGLLSIVLHLSELLSCG  246 (262)
Q Consensus       179 ~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~------------~~~~~~~~~~~d~~s~g~~~~e~~~~~  246 (262)
                      +  |+||||||+||+++.++.  ..+||+|||++.......            ..+++.|.+||.+....     .....
T Consensus       179 ~--ivH~Dikp~NIl~~~~~~--~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-----~~~~~  249 (352)
T 2jii_A          179 E--YVHGNVTAENIFVDPEDQ--SQVTLAGYGFAFRYCPSGKHVAYVEGSRSPHEGDLEFISMDLHKGCG-----PSRRS  249 (352)
T ss_dssp             T--CBCSCCCGGGEEEETTEE--EEEEECCGGGCBCSSGGGCCCCCCTTSSCTTCSCTTTCCHHHHTTCC-----CCHHH
T ss_pred             C--ccCCCCCHHHEEEcCCCC--ceEEEecCcceeeccCCCccccccccccccccCCccccCHHHHccCC-----CCchh
Confidence            8  999999999999986541  159999999998654321            24666777777543321     12236


Q ss_pred             cccchheeheecccCC
Q 024842          247 TVRVIQILMRELMFGR  262 (262)
Q Consensus       247 ~v~~~g~~~~~l~~G~  262 (262)
                      |+||+|+++|+|++|+
T Consensus       250 Di~slG~il~el~~g~  265 (352)
T 2jii_A          250 DLQSLGYCMLKWLYGF  265 (352)
T ss_dssp             HHHHHHHHHHHHHHSC
T ss_pred             hHHHHHHHHHHHHhCC
Confidence            7888888888887774

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7

Probab=99.98  E-value=1.3e-32  Score=228.57  Aligned_cols=195  Identities=22%  Similarity=0.307  Sum_probs=144.0

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCCC
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSH  104 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~h  104 (262)
                      .++|++.+.||+|+||.||+|++.  +                      ..||+|++....... .....|+.....++|
T Consensus        36 ~~~y~~~~~lg~G~~g~V~~~~~~--~----------------------~~vavK~~~~~~~~~-~~~e~~~~~~~~~~h   90 (337)
T 3mdy_A           36 AKQIQMVKQIGKGRYGEVWMGKWR--G----------------------EKVAVKVFFTTEEAS-WFRETEIYQTVLMRH   90 (337)
T ss_dssp             HHHCEEEEEEEEETTEEEEEEEET--T----------------------EEEEEEEEEGGGHHH-HHHHHHHHTSTTCCC
T ss_pred             ccceEEEeEeecCCCeEEEEEEEC--C----------------------ceEEEEEEeccccch-hhhHHHHHHHHhhcC
Confidence            368999999999999999999875  2                      368888775443221 222333333444599


Q ss_pred             CCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcC------
Q 024842          105 RNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSL------  178 (262)
Q Consensus       105 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~------  178 (262)
                      |||+++++.+..      ........+++|||+.+++|.+++.     ...+++..++.++.|++.||.|||+.      
T Consensus        91 ~~i~~~~~~~~~------~~~~~~~~~lv~e~~~~g~L~~~l~-----~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~  159 (337)
T 3mdy_A           91 ENILGFIAADIK------GTGSWTQLYLITDYHENGSLYDYLK-----STTLDAKSMLKLAYSSVSGLCHLHTEIFSTQG  159 (337)
T ss_dssp             TTBCCEEEEEEE------SCGGGCEEEEEECCCTTCBHHHHHH-----HCCBCHHHHHHHHHHHHHHHHHHHSCBCSTTC
T ss_pred             CCeeeEEEEEcc------CCCCCCceEEEEeccCCCcHHHHhh-----ccCCCHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence            999999988742      1111267899999999999999985     23599999999999999999999998      


Q ss_pred             --CCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC---------ccCcccCCcccchhhhhhhh-hhhhhcC
Q 024842          179 --EPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF---------ALGQRRYSCRNGLLSIVLHL-SELLSCG  246 (262)
Q Consensus       179 --~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~---------~~~~~~~~~~~d~~s~g~~~-~e~~~~~  246 (262)
                        +  |+||||||+|||++.++    .+||+|||++.......         ..++..|.+||.+....... .......
T Consensus       160 ~~~--ivH~Dikp~Nill~~~~----~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~  233 (337)
T 3mdy_A          160 KPA--IAHRDLKSKNILVKKNG----TCCIADLGLAVKFISDTNEVDIPPNTRVGTKRYMPPEVLDESLNRNHFQSYIMA  233 (337)
T ss_dssp             BCC--EECSCCCGGGEEECTTS----CEEECCCTTCEECC---------CCSSCSCGGGCCHHHHTTCCCTTCTHHHHHH
T ss_pred             CCC--EEecccchHHEEECCCC----CEEEEeCCCceeeccccccccCCCCCCccCcceeChhhcccccCCccccCcccc
Confidence              7  99999999999998776    69999999997654322         25677888887654322111 1111235


Q ss_pred             cccchheeheecccC
Q 024842          247 TVRVIQILMRELMFG  261 (262)
Q Consensus       247 ~v~~~g~~~~~l~~G  261 (262)
                      ||||+|+++|||++|
T Consensus       234 DiwslG~il~el~tg  248 (337)
T 3mdy_A          234 DMYSFGLILWEVARR  248 (337)
T ss_dssp             HHHHHHHHHHHHHTT
T ss_pred             chHHHHHHHHHHHhc
Confidence            888888888888887

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*

Probab=99.97  E-value=9.6e-33  Score=228.78  Aligned_cols=205  Identities=18%  Similarity=0.249  Sum_probs=148.6

Q ss_pred             eeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc-chHHHHHHHHHHHHh
Q 024842           21 VWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ-NNEQLEMVREEIRVS   99 (262)
Q Consensus        21 ~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~-~~~~~~~~~~E~~~l   99 (262)
                      ..+..++|++.+.||+|+||.||+|++......                 ..+..||+|.+... .......+.+|+.++
T Consensus        25 ~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~-----------------~~~~~vavK~~~~~~~~~~~~~~~~E~~~l   87 (327)
T 2yfx_A           25 KEVPRKNITLIRGLGHGAFGEVYEGQVSGMPND-----------------PSPLQVAVKTLPEVCSEQDELDFLMEALII   87 (327)
T ss_dssp             CBCCGGGCEEEEECC--CSSCEEEEEC-------------------------CCEEEEEECCSSCCHHHHHHHHHHHHHH
T ss_pred             ccCChhheEEEEEEcCCCCeeEEEEEEcCCCCC-----------------CccceEEEEEeccccchhhHHHHHHHHHHH
Confidence            345688999999999999999999996432110                 12447888887644 344456788999999


Q ss_pred             hhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhc---CCCCCHHHHHHHHHHHHHHHHHHH
Q 024842          100 SLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTK---KEFFSTSDVLQIFYQICAGLKHMH  176 (262)
Q Consensus       100 ~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~---~~~~~~~~~~~i~~ql~~~l~~lH  176 (262)
                      +.++||||+++++++          ......+++||++.+++|.+++......   ...+++..++.++.|++.||.|||
T Consensus        88 ~~l~h~~iv~~~~~~----------~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH  157 (327)
T 2yfx_A           88 SKFNHQNIVRCIGVS----------LQSLPRFILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLE  157 (327)
T ss_dssp             HHCCCTTBCCEEEEE----------CSSSSCEEEEECCTTEEHHHHHHHTSCCSSSTTSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             hhCCCCCCCeEEEEE----------cCCCCcEEEEecCCCCcHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHh
Confidence            999999999999987          3356689999999999999998753321   144899999999999999999999


Q ss_pred             cCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-------ccCcccCCcccchhhhhhhhhhhhhcCccc
Q 024842          177 SLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-------ALGQRRYSCRNGLLSIVLHLSELLSCGTVR  249 (262)
Q Consensus       177 ~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-------~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~  249 (262)
                      +.+  ++||||||+||+++.++. ...++|+|||++.......       ..++..|.+||.+..-.     .....|+|
T Consensus       158 ~~~--i~H~dlkp~NIli~~~~~-~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-----~~~~~Di~  229 (327)
T 2yfx_A          158 ENH--FIHRDIAARNCLLTCPGP-GRVAKIGDFGMARDIYRASYYRKGGCAMLPVKWMPPEAFMEGI-----FTSKTDTW  229 (327)
T ss_dssp             HTT--CCCSCCCGGGEEESCSST-TCCEEECCCHHHHHHHC------CCGGGSCGGGCCHHHHHHCC-----CCHHHHHH
T ss_pred             hCC--eecCcCCHhHEEEecCCC-cceEEECccccccccccccccccCCCcCCCcceeCHhHhcCCC-----CCchhhHH
Confidence            999  999999999999985542 2269999999987543221       23455677776442211     11235667


Q ss_pred             chheeheeccc
Q 024842          250 VIQILMRELMF  260 (262)
Q Consensus       250 ~~g~~~~~l~~  260 (262)
                      ++|+++|+|++
T Consensus       230 slG~il~ellt  240 (327)
T 2yfx_A          230 SFGVLLWEIFS  240 (327)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHc
Confidence            77777776665

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*

Probab=99.97  E-value=7e-33  Score=231.78  Aligned_cols=200  Identities=24%  Similarity=0.271  Sum_probs=146.3

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc--hHHHHHHHHHHHHhhhC
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN--NEQLEMVREEIRVSSLF  102 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~--~~~~~~~~~E~~~l~~l  102 (262)
                      .++|++.+.||+|+||.||+|++..+++                      .||+|++....  ......+.+|+.+++.+
T Consensus        16 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~----------------------~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l   73 (351)
T 3mi9_A           16 VSKYEKLAKIGQGTFGEVFKARHRKTGQ----------------------KVALKKVLMENEKEGFPITALREIKILQLL   73 (351)
T ss_dssp             GGGEEEEEECSSCSTTSEEEEEETTTCC----------------------EEEEEECCCSSCSSSSCHHHHHHHHHHHHC
T ss_pred             ccceeEEEEEecCCCcEEEEEEECCCCC----------------------EEEEEEEecccccccchHHHHHHHHHHHhc
Confidence            4689999999999999999999987665                      56666554332  22234667899999999


Q ss_pred             CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCe
Q 024842          103 SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPY  182 (262)
Q Consensus       103 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~i  182 (262)
                      +||||+++++++.....  ......+..+++||++.+ +|.+.+.   .....+++..++.++.|++.||.|||+++  |
T Consensus        74 ~h~~iv~~~~~~~~~~~--~~~~~~~~~~lv~e~~~~-~l~~~l~---~~~~~~~~~~~~~i~~qi~~~l~~LH~~~--i  145 (351)
T 3mi9_A           74 KHENVVNLIEICRTKAS--PYNRCKGSIYLVFDFCEH-DLAGLLS---NVLVKFTLSEIKRVMQMLLNGLYYIHRNK--I  145 (351)
T ss_dssp             CCTTBCCEEEEEEEC----------CEEEEEEECCSE-EHHHHHH---CTTSCCCHHHHHHHHHHHHHHHHHHHHTT--E
T ss_pred             cCCCcccHhheeecccc--ccccCCceEEEEEeccCC-CHHHHHh---hccCCCCHHHHHHHHHHHHHHHHHHHHCC--e
Confidence            99999999988742100  001124568999999875 6666654   23355999999999999999999999999  9


Q ss_pred             eecCCCCCcEEEecCCCCCCceEEeeccceeeccccC---------ccCcccCCcccchhhhhhhhhhhhhcCcccchhe
Q 024842          183 AHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF---------ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQI  253 (262)
Q Consensus       183 vH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~---------~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~  253 (262)
                      +||||||+|||++.++    .+||+|||++.......         ..+++.|.+||.+.....    .....|+||+|+
T Consensus       146 vH~Dlkp~NIl~~~~~----~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~----~~~~~DiwslG~  217 (351)
T 3mi9_A          146 LHRDMKAANVLITRDG----VLKLADFGLARAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERD----YGPPIDLWGAGC  217 (351)
T ss_dssp             ECCCCSGGGEEECTTS----CEEECCCTTCEECCCCSSSSCCCCCSSCSCGGGCCHHHHTTCCS----CCTHHHHHHHHH
T ss_pred             eCCCCCHHHEEEcCCC----CEEEccchhcccccccccccccccCCcccccCccCchhhcCCCC----CCcHhHHHHHHH
Confidence            9999999999998776    69999999998754211         234666777765432110    112357888888


Q ss_pred             eheecccCC
Q 024842          254 LMRELMFGR  262 (262)
Q Consensus       254 ~~~~l~~G~  262 (262)
                      ++++|++|+
T Consensus       218 il~ell~g~  226 (351)
T 3mi9_A          218 IMAEMWTRS  226 (351)
T ss_dssp             HHHHHHHSS
T ss_pred             HHHHHHhCC
Confidence            888887774

>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A

Probab=99.97  E-value=2.7e-32  Score=229.92  Aligned_cols=198  Identities=24%  Similarity=0.328  Sum_probs=146.0

Q ss_pred             eecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc--chHHHHHHHHHHHHh
Q 024842           22 WINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ--NNEQLEMVREEIRVS   99 (262)
Q Consensus        22 ~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~--~~~~~~~~~~E~~~l   99 (262)
                      |-..++|.+.+.||+|+||.||+|.+..+++                      .||+|++...  .....+.+.+|+.++
T Consensus        38 ~~l~~~y~~~~~lG~G~~g~Vy~~~~~~~~~----------------------~vaiK~~~~~~~~~~~~~~~~~E~~~l   95 (371)
T 4exu_A           38 WELPKTYVSPTHVGSGAYGSVCSAIDKRSGE----------------------KVAIKKLSRPFQSEIFAKRAYRELLLL   95 (371)
T ss_dssp             EEEETTEEEEEEEEECSSEEEEEEEETTTTE----------------------EEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             ecccccEEEEeEEecCCCeEEEEEEECCCCC----------------------EEEEEEecccccchhHHHHHHHHHHHH
Confidence            4445799999999999999999999987655                      5777766543  344457788999999


Q ss_pred             hhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCC
Q 024842          100 SLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLE  179 (262)
Q Consensus       100 ~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~  179 (262)
                      +.++||||+++++++...    .........+++||++. ++|.+.+.      ..+++..++.++.|++.||.|||+.+
T Consensus        96 ~~l~h~niv~~~~~~~~~----~~~~~~~~~~lv~e~~~-~~l~~~~~------~~~~~~~~~~i~~qi~~aL~~LH~~~  164 (371)
T 4exu_A           96 KHMQHENVIGLLDVFTPA----SSLRNFYDFYLVMPFMQ-TDLQKIMG------MEFSEEKIQYLVYQMLKGLKYIHSAG  164 (371)
T ss_dssp             HHCCCTTBCCCSEEECSC----SSSTTCCCCEEEEECCC-EEHHHHTT------SCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HhcCCCCchhhhhheecc----CCcccceeEEEEEcccc-ccHHHHhh------cCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            999999999999987310    00011123499999887 57776652      33999999999999999999999999


Q ss_pred             CCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC--ccCcccCCcccchhhhhhhhhhhhhcCcccchheehee
Q 024842          180 PPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF--ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRE  257 (262)
Q Consensus       180 ~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~--~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~  257 (262)
                        |+||||||+||+++.++    .+||+|||++.......  ..+++.|.+||.+....    ......|+||+|+++++
T Consensus       165 --ivH~Dikp~NIll~~~~----~~kL~Dfg~a~~~~~~~~~~~~t~~y~aPE~~~~~~----~~~~~~DiwslG~il~e  234 (371)
T 4exu_A          165 --VVHRDLKPGNLAVNEDC----ELKILDFGLARHADAEMTGYVVTRWYRAPEVILSWM----HYNQTVDIWSVGCIMAE  234 (371)
T ss_dssp             --CCCSCCCGGGEEECTTC----CEEECSTTCC--------CTTCCCTTSCHHHHSCCS----CCCTTHHHHHHHHHHHH
T ss_pred             --CcCCCcCHHHeEECCCC----CEEEEecCcccccccCcCCcccCccccCHHHhcCCC----CCCcHHhHHHHHHHHHH
Confidence              99999999999998776    69999999998665432  34667777777553311    11123577777777777


Q ss_pred             cccCC
Q 024842          258 LMFGR  262 (262)
Q Consensus       258 l~~G~  262 (262)
                      |++|+
T Consensus       235 l~~g~  239 (371)
T 4exu_A          235 MLTGK  239 (371)
T ss_dssp             HHHSS
T ss_pred             HHhCC
Confidence            77774

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*

Probab=99.97  E-value=4.3e-32  Score=227.03  Aligned_cols=196  Identities=21%  Similarity=0.278  Sum_probs=149.5

Q ss_pred             cCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc-chHHHHHHHHHHHHhhhC
Q 024842           24 NENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ-NNEQLEMVREEIRVSSLF  102 (262)
Q Consensus        24 ~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~-~~~~~~~~~~E~~~l~~l  102 (262)
                      ..++|++.+.||+|+||.||+|++..+++                      .||+|++... .......+.+|+.+++.+
T Consensus         9 i~~~y~~~~~lg~G~~g~V~~~~~~~~~~----------------------~vaiK~~~~~~~~~~~~~~~~E~~~l~~l   66 (353)
T 2b9h_A            9 ISSDFQLKSLLGEGAYGVVCSATHKPTGE----------------------IVAIKKIEPFDKPLFALRTLREIKILKHF   66 (353)
T ss_dssp             SCTTEEEEEEEEECSSEEEEEEEETTTTE----------------------EEEEEEECCCSSHHHHHHHHHHHHHHHHC
T ss_pred             cccceEEeeEEcCCCCeEEEEEEECCCCc----------------------EEEEEeecccccchHHHHHHHHHHHHHhC
Confidence            36799999999999999999999876655                      6777776543 334456788999999999


Q ss_pred             CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCe
Q 024842          103 SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPY  182 (262)
Q Consensus       103 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~i  182 (262)
                      +||||+++++++..     .........+++||++. ++|.+++..     ..+++..++.++.|++.||.|||+++  +
T Consensus        67 ~h~~iv~~~~~~~~-----~~~~~~~~~~lv~e~~~-~~L~~~~~~-----~~~~~~~~~~~~~qi~~~L~~LH~~~--i  133 (353)
T 2b9h_A           67 KHENIITIFNIQRP-----DSFENFNEVYIIQELMQ-TDLHRVIST-----QMLSDDHIQYFIYQTLRAVKVLHGSN--V  133 (353)
T ss_dssp             CCTTBCCEEEECCC-----SCSTTCCCEEEEECCCS-EEHHHHHHH-----CCCCHHHHHHHHHHHHHHHHHHHHTT--E
T ss_pred             cCCCcCCeeeeecc-----cccCccceEEEEEeccC-ccHHHHHhh-----cCCCHHHHHHHHHHHHHHHHHHHHCC--e
Confidence            99999999987631     00122367899999886 688887752     35999999999999999999999999  9


Q ss_pred             eecCCCCCcEEEecCCCCCCceEEeeccceeeccccC---------------ccCcccCCcccchhhhhhhhhhhhhcCc
Q 024842          183 AHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF---------------ALGQRRYSCRNGLLSIVLHLSELLSCGT  247 (262)
Q Consensus       183 vH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~---------------~~~~~~~~~~~d~~s~g~~~~e~~~~~~  247 (262)
                      +||||||+||+++.++    .+||+|||++.......               ..++..|.+||.+..-+    ......|
T Consensus       134 vH~Dlkp~Nil~~~~~----~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~----~~~~~~D  205 (353)
T 2b9h_A          134 IHRDLKPSNLLINSNC----DLKVCDFGLARIIDESAADNSEPTGQQSGMVEFVATRWYRAPEVMLTSA----KYSRAMD  205 (353)
T ss_dssp             ECSCCCGGGEEECTTC----CEEECCCTTCEECC----------------CCCCCCGGGCCHHHHHSCC----CCCHHHH
T ss_pred             ecCCCCHHHeEEcCCC----cEEEEecccccccccccccccCccccccchhhccccccccCCeeeccCC----Cccchhh
Confidence            9999999999998776    69999999998764321               13466677776542211    1112357


Q ss_pred             ccchheeheecccCC
Q 024842          248 VRVIQILMRELMFGR  262 (262)
Q Consensus       248 v~~~g~~~~~l~~G~  262 (262)
                      +||+|+++++|++|+
T Consensus       206 i~slG~il~~l~~g~  220 (353)
T 2b9h_A          206 VWSCGCILAELFLRR  220 (353)
T ss_dssp             HHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHHhCC
Confidence            888888888887774

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}

Probab=99.97  E-value=3.7e-32  Score=223.87  Aligned_cols=192  Identities=20%  Similarity=0.348  Sum_probs=145.5

Q ss_pred             ecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhC
Q 024842           23 INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLF  102 (262)
Q Consensus        23 ~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l  102 (262)
                      ...++|++.+.||+|+||.||+|.+..+++                      .|++|.+.....  .+.+.+|+.+++.+
T Consensus        26 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~----------------------~vaiK~~~~~~~--~~~~~~e~~~l~~l   81 (314)
T 3com_A           26 QPEEVFDVLEKLGEGSYGSVYKAIHKETGQ----------------------IVAIKQVPVESD--LQEIIKEISIMQQC   81 (314)
T ss_dssp             ----CEEEEEECC----CEEEEEEETTTCC----------------------EEEEEEEETTSC--CHHHHHHHHHHHTC
T ss_pred             cchhhhhhheeeccCCCeEEEEEEECCCCC----------------------EEEEEecCchHH--HHHHHHHHHHHHhC
Confidence            346789999999999999999999876654                      577776654332  35678899999999


Q ss_pred             CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCe
Q 024842          103 SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPY  182 (262)
Q Consensus       103 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~i  182 (262)
                      +||||+++++.+.          .....+++||++.+++|.+++..   ....+++..++.++.|++.||.|||+.+  +
T Consensus        82 ~h~~i~~~~~~~~----------~~~~~~lv~e~~~~~~L~~~~~~---~~~~~~~~~~~~i~~~i~~~l~~lH~~~--i  146 (314)
T 3com_A           82 DSPHVVKYYGSYF----------KNTDLWIVMEYCGAGSVSDIIRL---RNKTLTEDEIATILQSTLKGLEYLHFMR--K  146 (314)
T ss_dssp             CCTTBCCEEEEEE----------ETTEEEEEEECCTTEEHHHHHHH---HTCCCCHHHHHHHHHHHHHHHHHHHHTT--E
T ss_pred             CCCCCccEEEEEE----------eCCEEEEEeecCCCCCHHHHHHh---cCCCCCHHHHHHHHHHHHHHHHHHHhCC--C
Confidence            9999999999873          35678999999999999998753   3456999999999999999999999999  9


Q ss_pred             eecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-----ccCcccCCcccchhhhhhhhhhhhhcCcccchheehee
Q 024842          183 AHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRE  257 (262)
Q Consensus       183 vH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~  257 (262)
                      +|+||||+||+++.++    .++|+|||++.......     ..++..|.+||.+....     .....|+|++|+++|+
T Consensus       147 ~H~dl~p~Nil~~~~~----~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-----~~~~~Di~slG~il~~  217 (314)
T 3com_A          147 IHRDIKAGNILLNTEG----HAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIG-----YNCVADIWSLGITAIE  217 (314)
T ss_dssp             ECCCCSGGGEEECTTC----CEEECCCTTCEECBTTBSCBCCCCSCGGGCCHHHHSSSC-----BCTTHHHHHHHHHHHH
T ss_pred             cCCCcCHHHEEECCCC----CEEEeecccchhhhhhccccCccCCCCCccChhhcCCCC-----CCccccHHHHHHHHHH
Confidence            9999999999998776    69999999998765332     24566677776543321     1123577777777777


Q ss_pred             cccCC
Q 024842          258 LMFGR  262 (262)
Q Consensus       258 l~~G~  262 (262)
                      |++|+
T Consensus       218 l~~g~  222 (314)
T 3com_A          218 MAEGK  222 (314)
T ss_dssp             HHHSS
T ss_pred             HHhCC
Confidence            77664

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}

Probab=99.97  E-value=2.7e-32  Score=222.71  Aligned_cols=196  Identities=18%  Similarity=0.185  Sum_probs=151.4

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCCC
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSH  104 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~h  104 (262)
                      -++|.....||+|+||.||+|.+..+++                      .|++|.+........+.+.+|+.+++.++|
T Consensus        21 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~----------------------~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h   78 (295)
T 2clq_A           21 YDENGDRVVLGKGTYGIVYAGRDLSNQV----------------------RIAIKEIPERDSRYSQPLHEEIALHKHLKH   78 (295)
T ss_dssp             BCTTSSBCEEEECSSSEEEEEEETTTCC----------------------EEEEEEEECCCC---HHHHHHHHHHHTCCC
T ss_pred             ccCCCCcEEEeecCcEEEEEEEECCCCe----------------------EEEEEEccCCchHHHHHHHHHHHHHHhCCC
Confidence            3444445589999999999999876654                      678887766655666788999999999999


Q ss_pred             CCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeee
Q 024842          105 RNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAH  184 (262)
Q Consensus       105 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH  184 (262)
                      |||+++++++          ...+..+++||++.+++|.+++.... ....+++..++.++.|++.||.|||+.+  ++|
T Consensus        79 ~~iv~~~~~~----------~~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~~qi~~~l~~lH~~~--i~H  145 (295)
T 2clq_A           79 KNIVQYLGSF----------SENGFIKIFMEQVPGGSLSALLRSKW-GPLKDNEQTIGFYTKQILEGLKYLHDNQ--IVH  145 (295)
T ss_dssp             TTBCCEEEEE----------EETTEEEEEEECCSEEEHHHHHHHTT-CCCTTCHHHHHHHHHHHHHHHHHHHHTT--EEC
T ss_pred             CCEeeEeeEE----------EeCCcEEEEEEeCCCCCHHHHHHhhc-cCCCccHHHHHHHHHHHHHHHHHHHhCC--EEc
Confidence            9999999987          33567899999999999999886422 2234679999999999999999999998  999


Q ss_pred             cCCCCCcEEEec-CCCCCCceEEeeccceeecccc-----CccCcccCCcccchhhhhhhhhhhhhcCcccchheeheec
Q 024842          185 NDVKPGNILITC-RKGQPPLAILMDFGSARPAQSK-----FALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMREL  258 (262)
Q Consensus       185 ~dikp~Nill~~-~~~~~~~~kl~Dfg~a~~~~~~-----~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l  258 (262)
                      +||||+||+++. ++    .++|+|||++......     ...++..|.+||.+..-..   ......|+|++|+++|+|
T Consensus       146 ~dl~p~Nil~~~~~~----~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~---~~~~~~Di~slG~il~~l  218 (295)
T 2clq_A          146 RDIKGDNVLINTYSG----VLKISDFGTSKRLAGINPCTETFTGTLQYMAPEIIDKGPR---GYGKAADIWSLGCTIIEM  218 (295)
T ss_dssp             CCCSGGGEEEETTTC----CEEECCTTTCEESCC-----CCCCCCGGGCCHHHHHHGGG---GCSHHHHHHHHHHHHHHH
T ss_pred             cCCChhhEEEECCCC----CEEEeecccccccCCCCCcccccCCCccccChhhhcCCCC---CCCcHHHHHHHHHHHHHH
Confidence            999999999986 44    6999999999876432     2346677777776533211   112246888888888888


Q ss_pred             ccCC
Q 024842          259 MFGR  262 (262)
Q Consensus       259 ~~G~  262 (262)
                      ++|+
T Consensus       219 ~~g~  222 (295)
T 2clq_A          219 ATGK  222 (295)
T ss_dssp             HHTS
T ss_pred             HHCC
Confidence            8874

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*

Probab=99.97  E-value=4.4e-32  Score=232.70  Aligned_cols=193  Identities=22%  Similarity=0.285  Sum_probs=149.0

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhC--
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLF--  102 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l--  102 (262)
                      ..+|++.+.||+|+||.||+|.+..+++                      .||+|++... ....+.+.+|+.+++.+  
T Consensus        96 ~~ry~~~~~LG~G~fg~V~~a~~~~~~~----------------------~vAvK~~~~~-~~~~~~~~~E~~~l~~l~~  152 (429)
T 3kvw_A           96 AYRYEVLKVIGKGSFGQVVKAYDHKVHQ----------------------HVALKMVRNE-KRFHRQAAEEIRILEHLRK  152 (429)
T ss_dssp             TTTEEEEEEEEESSSEEEEEEEETTTTE----------------------EEEEEEECSC-HHHHHHHHHHHHHHHHHHT
T ss_pred             cCcEEEEEEcccCccEEEEEEEECCCCc----------------------EEEEEEECCc-cchHHHHHHHHHHHHHHhh
Confidence            5689999999999999999999887655                      6778776543 33345667777777666  


Q ss_pred             ----CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcC
Q 024842          103 ----SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSL  178 (262)
Q Consensus       103 ----~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~  178 (262)
                          +|+||+++++.+          ......+++||++. ++|.+++...  ....+++..++.++.|++.||.|||+.
T Consensus       153 ~~~~~~~~iv~~~~~~----------~~~~~~~lv~e~~~-~~L~~~l~~~--~~~~~~~~~~~~i~~qi~~aL~~LH~~  219 (429)
T 3kvw_A          153 QDKDNTMNVIHMLENF----------TFRNHICMTFELLS-MNLYELIKKN--KFQGFSLPLVRKFAHSILQCLDALHKN  219 (429)
T ss_dssp             TCTTSCSCBCCEEEEE----------EETTEEEEEECCCC-CBHHHHHHHT--TTCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccCCcCEEEEEeec----------ccCCeEEEEEeccC-CCHHHHHHhc--cCCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence                577999999887          33577899999885 6888887632  223489999999999999999999999


Q ss_pred             CCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC--ccCcccCCcccchhhhhhhhhhhhhcCcccchheehe
Q 024842          179 EPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF--ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMR  256 (262)
Q Consensus       179 ~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~--~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~  256 (262)
                      +  |+||||||+|||++.++.  ..+||+|||++.......  ..+++.|.+||.+....+     ....||||+|+++|
T Consensus       220 ~--ivHrDlKp~NILl~~~~~--~~vkL~DFG~a~~~~~~~~~~~gt~~y~aPE~~~~~~~-----~~~~DiwSlG~il~  290 (429)
T 3kvw_A          220 R--IIHCDLKPENILLKQQGR--SGIKVIDFGSSCYEHQRVYTYIQSRFYRAPEVILGARY-----GMPIDMWSLGCILA  290 (429)
T ss_dssp             T--EECSCCSGGGEEESSTTS--CCEEECCCTTCEETTCCCCSSCSCGGGCCHHHHHTBCC-----CTHHHHHHHHHHHH
T ss_pred             C--eecCCCCHHHeEEccCCC--cceEEeecccceecCCcccccCCCCCccChHHHhCCCC-----CchHHHHhHHHHHH
Confidence            8  999999999999987652  139999999997655432  356777888876543321     22357888888888


Q ss_pred             ecccCC
Q 024842          257 ELMFGR  262 (262)
Q Consensus       257 ~l~~G~  262 (262)
                      +|++|+
T Consensus       291 elltG~  296 (429)
T 3kvw_A          291 ELLTGY  296 (429)
T ss_dssp             HHHHSS
T ss_pred             HHHhCC
Confidence            888774

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A

Probab=99.97  E-value=5.3e-32  Score=221.05  Aligned_cols=191  Identities=22%  Similarity=0.320  Sum_probs=147.6

Q ss_pred             cCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCC
Q 024842           24 NENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFS  103 (262)
Q Consensus        24 ~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~  103 (262)
                      ..++|++.+.||+|+||.||+|++..+++                      .||+|.+.....  .+.+.+|+.+++.++
T Consensus         7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~----------------------~vavK~~~~~~~--~~~~~~e~~~l~~l~   62 (296)
T 3uzp_A            7 VGNRYRLGRKIGSGSFGDIYLGTDIAAGE----------------------EVAIKLECVKTK--HPQLHIESKIYKMMQ   62 (296)
T ss_dssp             ETTTEEEEEEEEEETTEEEEEEEETTTTE----------------------EEEEEEEESCSS--CCHHHHHHHHHHHHT
T ss_pred             eccEEEEEEEEccCCCeEEEEEEEcCCCc----------------------EEEEEEecCCcc--hhHHHHHHHHHHHhh
Confidence            36899999999999999999999877655                      567776544322  235778999999999


Q ss_pred             CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCee
Q 024842          104 HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYA  183 (262)
Q Consensus       104 h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~iv  183 (262)
                      |+++++.+..+.         ......+++||++ +++|.+++..   ....+++..++.++.|++.||.|||+++  ++
T Consensus        63 ~~~~i~~~~~~~---------~~~~~~~lv~e~~-~~~L~~~~~~---~~~~~~~~~~~~i~~qi~~~l~~lH~~~--iv  127 (296)
T 3uzp_A           63 GGVGIPTIRWCG---------AEGDYNVMVMELL-GPSLEDLFNF---CSRKFSLKTVLLLADQMISRIEYIHSKN--FI  127 (296)
T ss_dssp             TSTTCCCEEEEE---------EETTEEEEEEECC-CCBHHHHHHH---TTTCCCHHHHHHHHHHHHHHHHHHHHTT--EE
T ss_pred             cCCCCCcccccc---------CCCCceEEEEEec-CCCHHHHHHh---hccCCCHHHHHHHHHHHHHHHHHHHhCC--ee
Confidence            998877765542         3356789999999 9999998863   2345999999999999999999999999  99


Q ss_pred             ecCCCCCcEEEe---cCCCCCCceEEeeccceeeccccC------------ccCcccCCcccchhhhhhhhhhhhhcCcc
Q 024842          184 HNDVKPGNILIT---CRKGQPPLAILMDFGSARPAQSKF------------ALGQRRYSCRNGLLSIVLHLSELLSCGTV  248 (262)
Q Consensus       184 H~dikp~Nill~---~~~~~~~~~kl~Dfg~a~~~~~~~------------~~~~~~~~~~~d~~s~g~~~~e~~~~~~v  248 (262)
                      ||||||+||+++   .++    .+||+|||++.......            ..++..|.+||.+....+     ....||
T Consensus       128 H~dlkp~NIl~~~~~~~~----~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-----~~~~Di  198 (296)
T 3uzp_A          128 HRDVKPDNFLMGLGKKGN----LVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQ-----SRRDDL  198 (296)
T ss_dssp             CSCCCGGGEEECCGGGTT----CEEECCCTTCEECBCTTTCCBCCCCCSCCCCSCTTTCCHHHHTTCCC-----CHHHHH
T ss_pred             eCCCCHHHeEEecCCCCC----eEEEeeCCCcccccccccccccccccccccccccccCChhhhcCCCC-----Ccchhh
Confidence            999999999995   333    69999999998765432            246667777765433221     123577


Q ss_pred             cchheeheecccCC
Q 024842          249 RVIQILMRELMFGR  262 (262)
Q Consensus       249 ~~~g~~~~~l~~G~  262 (262)
                      ||+|+++|+|++|+
T Consensus       199 ~slG~il~~l~~g~  212 (296)
T 3uzp_A          199 ESLGYVLMYFNLGS  212 (296)
T ss_dssp             HHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHhCC
Confidence            77777777777774

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=99.97  E-value=2.4e-32  Score=235.83  Aligned_cols=193  Identities=22%  Similarity=0.280  Sum_probs=143.9

Q ss_pred             ceeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHh
Q 024842           20 DVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVS   99 (262)
Q Consensus        20 ~~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l   99 (262)
                      ...+..++|++.+.||+|+||.||+|.+..+                       ..||+|++...... .+.+.+|+.++
T Consensus       178 ~~~i~~~~~~~~~~lG~G~fg~Vy~~~~~~~-----------------------~~vavK~~~~~~~~-~~~~~~E~~~l  233 (452)
T 1fmk_A          178 AWEIPRESLRLEVKLGQGCFGEVWMGTWNGT-----------------------TRVAIKTLKPGTMS-PEAFLQEAQVM  233 (452)
T ss_dssp             CSBCCGGGEEEEEEEEECSSCEEEEEEETTT-----------------------EEEEEEECCTTSSC-HHHHHHHHHHH
T ss_pred             ccccChhHceeeeeecCCCCeEEEEEEECCC-----------------------ceEEEEEeccCCCC-HHHHHHHHHHH
Confidence            3446678999999999999999999998642                       25788877654322 36788999999


Q ss_pred             hhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCC
Q 024842          100 SLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLE  179 (262)
Q Consensus       100 ~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~  179 (262)
                      +.++||||+++++++.           ....+++|||+.+++|.+++...  ....+++..++.++.|++.||+|||+++
T Consensus       234 ~~l~hp~iv~~~~~~~-----------~~~~~iv~e~~~~gsL~~~l~~~--~~~~~~~~~~~~i~~qi~~~l~~LH~~~  300 (452)
T 1fmk_A          234 KKLRHEKLVQLYAVVS-----------EEPIYIVTEYMSKGSLLDFLKGE--TGKYLRLPQLVDMAAQIASGMAYVERMN  300 (452)
T ss_dssp             HHCCCTTBCCEEEEEC-----------SSSCEEEECCCTTCBHHHHHSHH--HHTTCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HhCCCCCEeeEEEEEc-----------CCceEEEehhhcCCCHHHHHHhc--CCCCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence            9999999999998862           25689999999999999988632  2245899999999999999999999999


Q ss_pred             CCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC------ccCcccCCcccchhhhhhhhhhhhhcCcccchhe
Q 024842          180 PPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF------ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQI  253 (262)
Q Consensus       180 ~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~------~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~  253 (262)
                        ++||||||+|||++.++    .+||+|||++.......      ..++..|++||.+..-.     .....||||+|+
T Consensus       301 --ivHrDlkp~Nill~~~~----~~kl~DfG~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-----~~~~sDvwslG~  369 (452)
T 1fmk_A          301 --YVHRDLRAANILVGENL----VCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGR-----FTIKSDVWSFGI  369 (452)
T ss_dssp             --CCCSCCSGGGEEECGGG----CEEECCCCTTC--------------CCGGGSCHHHHHHCC-----CCHHHHHHHHHH
T ss_pred             --eeCCCCChhhEEECCCC----CEEECCCccceecCCCceecccCCcccccccCHhHHhcCC-----CCccccHHhHHH
Confidence              99999999999998776    69999999998664322      12334566666332111     111245555555


Q ss_pred             eheeccc
Q 024842          254 LMRELMF  260 (262)
Q Consensus       254 ~~~~l~~  260 (262)
                      ++|||++
T Consensus       370 ~l~el~t  376 (452)
T 1fmk_A          370 LLTELTT  376 (452)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHh
Confidence            5555555

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*

Probab=99.97  E-value=1.9e-32  Score=223.01  Aligned_cols=193  Identities=25%  Similarity=0.377  Sum_probs=148.7

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc--chHHHHHHHHHHHHhhhC
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ--NNEQLEMVREEIRVSSLF  102 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~--~~~~~~~~~~E~~~l~~l  102 (262)
                      .++|++.+.||+|+||.||+|++..+++                      .|++|++...  .....+.+.+|+.+++.+
T Consensus        21 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~----------------------~valK~~~~~~~~~~~~~~~~~e~~~l~~l   78 (287)
T 2wei_A           21 AERYNIVCMLGKGSFGEVLKCKDRITQQ----------------------EYAVKVINKASAKNKDTSTILREVELLKKL   78 (287)
T ss_dssp             HHHEEEEEEEEEETTEEEEEEEETTTCC----------------------EEEEEEEEGGGBSSSCHHHHHHHHHHHHTC
T ss_pred             hhcceeeEEEcCCCCEEEEEEEEcCCCc----------------------EEEEEEecccccchHHHHHHHHHHHHHHhc
Confidence            4689999999999999999999876654                      5777765433  223356788999999999


Q ss_pred             CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCe
Q 024842          103 SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPY  182 (262)
Q Consensus       103 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~i  182 (262)
                      +||||+++++++          ......+++||++.+++|.+.+.    ....+++..++.++.|++.||.|||+.+  +
T Consensus        79 ~h~~i~~~~~~~----------~~~~~~~lv~e~~~~~~L~~~l~----~~~~~~~~~~~~i~~qi~~~l~~LH~~~--i  142 (287)
T 2wei_A           79 DHPNIMKLFEIL----------EDSSSFYIVGELYTGGELFDEII----KRKRFSEHDAARIIKQVFSGITYMHKHN--I  142 (287)
T ss_dssp             CCTTBCCEEEEE----------ECSSEEEEEECCCCSCBHHHHHH----HHSSCCHHHHHHHHHHHHHHHHHHHHTT--C
T ss_pred             cCCCccEEEEEE----------eCCCeEEEEEEccCCCCHHHHHH----hcCCCCHHHHHHHHHHHHHHHHHHHHCC--e
Confidence            999999999987          33567899999999999998876    3345999999999999999999999998  9


Q ss_pred             eecCCCCCcEEEecCCCCCCceEEeeccceeeccccC----ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheec
Q 024842          183 AHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMREL  258 (262)
Q Consensus       183 vH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l  258 (262)
                      +|+||||+||+++.++. ...+||+|||++.......    ..++..|.+||.+..      ......|+|++|+++++|
T Consensus       143 ~H~dl~p~NIlv~~~~~-~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~------~~~~~~Di~slG~~l~~l  215 (287)
T 2wei_A          143 VHRDLKPENILLESKEK-DCDIKIIDFGLSTCFQQNTKMKDRIGTAYYIAPEVLRG------TYDEKCDVWSAGVILYIL  215 (287)
T ss_dssp             CCSCCCGGGEEESCSST-TCCEEECSTTGGGTBCCCSSCSCHHHHHTTCCHHHHTT------CCCTHHHHHHHHHHHHHH
T ss_pred             eccCCChhhEEEecCCC-cccEEEeccCcceeecCCCccccccCcccccChHHhcC------CCCCchhhHhHHHHHHHH
Confidence            99999999999976542 2269999999987654332    134556666664321      111235677777777776


Q ss_pred             ccCC
Q 024842          259 MFGR  262 (262)
Q Consensus       259 ~~G~  262 (262)
                      ++|+
T Consensus       216 ~~g~  219 (287)
T 2wei_A          216 LSGT  219 (287)
T ss_dssp             HHSS
T ss_pred             HhCC
Confidence            6663

>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A

Probab=99.97  E-value=2.8e-32  Score=222.58  Aligned_cols=190  Identities=22%  Similarity=0.329  Sum_probs=143.5

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCCC
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSH  104 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~h  104 (262)
                      .++|++.+.||+|+||.||+|++..+++                      .||+|......  ..+.+..|+.+++.++|
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~----------------------~vavK~~~~~~--~~~~~~~e~~~l~~l~~   63 (296)
T 4hgt_A            8 GNRYRLGRKIGSGSFGDIYLGTDIAAGE----------------------EVAIKLECVKT--KHPQLHIESKIYKMMQG   63 (296)
T ss_dssp             ---CEEEEEEEECSSSEEEEEEETTTTE----------------------EEEEEEEEC-----CCCHHHHHHHHHHHTT
T ss_pred             CCceEEeeeecCCCCeEEEEEEEcCCCc----------------------eEEEEeecccc--cchHHHHHHHHHHHhcC
Confidence            5789999999999999999999877655                      56777543322  12356789999999999


Q ss_pred             CCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeee
Q 024842          105 RNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAH  184 (262)
Q Consensus       105 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH  184 (262)
                      ++++..+..+.         ......+++||++ +++|.+++..   ....+++..++.++.|++.||.|||+.+  ++|
T Consensus        64 ~~~i~~~~~~~---------~~~~~~~lv~e~~-~~~L~~~~~~---~~~~~~~~~~~~i~~qi~~~l~~LH~~~--ivH  128 (296)
T 4hgt_A           64 GVGIPTIRWCG---------AEGDYNVMVMELL-GPSLEDLFNF---CSRKFSLKTVLLLADQMISRIEYIHSKN--FIH  128 (296)
T ss_dssp             STTCCCEEEEE---------EETTEEEEEEECC-CCBHHHHHHH---TTSCCCHHHHHHHHHHHHHHHHHHHHTT--EEC
T ss_pred             CCCCCeeeeec---------CCCCceEEEEEcc-CCCHHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHHHHCC--eec
Confidence            98888776652         3356789999999 9999998763   2445999999999999999999999999  999


Q ss_pred             cCCCCCcEEE---ecCCCCCCceEEeeccceeeccccC------------ccCcccCCcccchhhhhhhhhhhhhcCccc
Q 024842          185 NDVKPGNILI---TCRKGQPPLAILMDFGSARPAQSKF------------ALGQRRYSCRNGLLSIVLHLSELLSCGTVR  249 (262)
Q Consensus       185 ~dikp~Nill---~~~~~~~~~~kl~Dfg~a~~~~~~~------------~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~  249 (262)
                      |||||+||++   +.++    .+||+|||++.......            ..++..|.+||.+....+     ....|||
T Consensus       129 ~Dlkp~NIl~~~~~~~~----~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-----~~~~Di~  199 (296)
T 4hgt_A          129 RDVKPDNFLMGLGKKGN----LVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQ-----SRRDDLE  199 (296)
T ss_dssp             SCCSGGGEEECCGGGTT----CEEECCCTTCEECBCTTTCCBCCCCCSCCCCSCGGGCCHHHHTTCCC-----CHHHHHH
T ss_pred             CCCCHHHeeeeccCCCC----eEEEecCccceeccCcccCccCCCCcccccCCCccccchHHhcCCCC-----CchhHHH
Confidence            9999999999   4444    69999999998765432            246667777765433221     1235788


Q ss_pred             chheeheecccCC
Q 024842          250 VIQILMRELMFGR  262 (262)
Q Consensus       250 ~~g~~~~~l~~G~  262 (262)
                      |+|+++|+|++|+
T Consensus       200 slG~il~~l~~g~  212 (296)
T 4hgt_A          200 SLGYVLMYFNLGS  212 (296)
T ss_dssp             HHHHHHHHHHHSS
T ss_pred             HHHHHHHHHhcCC
Confidence            8888888877774

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=99.97  E-value=4.6e-32  Score=241.88  Aligned_cols=197  Identities=17%  Similarity=0.230  Sum_probs=148.1

Q ss_pred             eeecCCceEEEE-EeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc-chHHHHHHHHHHHH
Q 024842           21 VWINENRYRILR-QLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ-NNEQLEMVREEIRV   98 (262)
Q Consensus        21 ~~~~~~~y~~~~-~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~-~~~~~~~~~~E~~~   98 (262)
                      ..+..+++.+.+ .||+|+||.||+|.+...+.                    +..||+|++... .....+.+.+|+.+
T Consensus       330 ~~~~~~~~~~~~~~LG~G~fG~Vy~~~~~~~~~--------------------~~~vAvK~~~~~~~~~~~~~~~~E~~i  389 (613)
T 2ozo_A          330 LFLKRDNLLIADIELGCGNFGSVRQGVYRMRKK--------------------QIDVAIKVLKQGTEKADTEEMMREAQI  389 (613)
T ss_dssp             SBCCTTSEEEEEEEEEECSSSEEEEEEEECSSC--------------------EEEEEEEECCCCCSSTTHHHHHHHHHH
T ss_pred             eeccccceeEcCcEEecCCCcEEEEEEEecCCC--------------------cEEEEEEEcCCCCChHHHHHHHHHHHH
Confidence            345566777777 89999999999998764322                    235788877654 23345788999999


Q ss_pred             hhhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcC
Q 024842           99 SSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSL  178 (262)
Q Consensus        99 l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~  178 (262)
                      ++.++||||+++++++.           ....+++|||+.+++|.+++..   ....+++..++.++.|++.||+|||++
T Consensus       390 l~~l~hpniv~l~~~~~-----------~~~~~lv~E~~~~g~L~~~l~~---~~~~l~~~~~~~i~~qi~~~L~~LH~~  455 (613)
T 2ozo_A          390 MHQLDNPYIVRLIGVCQ-----------AEALMLVMEMAGGGPLHKFLVG---KREEIPVSNVAELLHQVSMGMKYLEEK  455 (613)
T ss_dssp             HTTCCCTTBCCEEEEEE-----------SSSEEEEEECCTTCBHHHHHTT---CTTTSCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHhCCCCCEeeEEEEec-----------cCCeEEEEEeCCCCcHHHHHhh---ccCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            99999999999999873           2458999999999999998752   345699999999999999999999999


Q ss_pred             CCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC--------ccCcccCCcccchhhhhhhhhhhhhcCcccc
Q 024842          179 EPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF--------ALGQRRYSCRNGLLSIVLHLSELLSCGTVRV  250 (262)
Q Consensus       179 ~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~--------~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~  250 (262)
                      +  |+||||||+|||++.++    .+||+|||++.......        ..++..|.+||.+..-.     .....||||
T Consensus       456 ~--iiHrDlkp~NILl~~~~----~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~y~APE~~~~~~-----~~~~sDvwS  524 (613)
T 2ozo_A          456 N--FVHRNLAARNVLLVNRH----YAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRK-----FSSRSDVWS  524 (613)
T ss_dssp             T--CCCSCCSGGGEEEEETT----EEEECCCSTTTTCC--------------CCTTSCHHHHHHCC-----CCHHHHHHH
T ss_pred             C--EEcCcCCHHHEEEcCCC----cEEEeeccCcccccCCCceeeeccCCCCccceeCHhhhcCCC-----CCcHHHHHH
Confidence            9  99999999999998777    79999999998654322        12234677776442211     112356777


Q ss_pred             hheeheeccc-CC
Q 024842          251 IQILMRELMF-GR  262 (262)
Q Consensus       251 ~g~~~~~l~~-G~  262 (262)
                      +|+++|||++ |+
T Consensus       525 lGv~l~ellt~G~  537 (613)
T 2ozo_A          525 YGVTMWEALSYGQ  537 (613)
T ss_dssp             HHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHCCC
Confidence            7777777665 53

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*

Probab=99.97  E-value=6.8e-32  Score=229.05  Aligned_cols=199  Identities=25%  Similarity=0.316  Sum_probs=150.2

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCC-
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFS-  103 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~-  103 (262)
                      .++|++.+.||+|+||.||+|++..+++                      .||+|++... ....+.+.+|+.+++.++ 
T Consensus        36 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~----------------------~vavK~~~~~-~~~~~~~~~E~~~l~~l~~   92 (397)
T 1wak_A           36 NGRYHVIRKLGWGHFSTVWLSWDIQGKK----------------------FVAMKVVKSA-EHYTETALDEIRLLKSVRN   92 (397)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTE----------------------EEEEEEECSC-HHHHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEEEeeecCCeeEEEEEecCCCe----------------------EEEEEEEecC-CcchHHHHHHHHHHHHHhh
Confidence            6899999999999999999999877654                      6788876543 334567888999998885 


Q ss_pred             -------CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHH
Q 024842          104 -------HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMH  176 (262)
Q Consensus       104 -------h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH  176 (262)
                             |+||+++++.+..      .+......+++||++ ++++.+.+...  ....+++..++.++.||+.||.|||
T Consensus        93 ~~~~~~~~~~iv~~~~~~~~------~~~~~~~~~lv~e~~-~~~l~~~~~~~--~~~~~~~~~~~~i~~qi~~aL~~lH  163 (397)
T 1wak_A           93 SDPNDPNREMVVQLLDDFKI------SGVNGTHICMVFEVL-GHHLLKWIIKS--NYQGLPLPCVKKIIQQVLQGLDYLH  163 (397)
T ss_dssp             SCTTCGGGGGBCCEEEEEEE------EETTEEEEEEEECCC-CCBHHHHHHHT--TTSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCCcceeeeeecceee------cCCCCceEEEEEecc-CccHHHHHHhc--ccCCCCHHHHHHHHHHHHHHHHHHH
Confidence                   7889999988731      112356789999988 56666655421  2245999999999999999999999


Q ss_pred             cC-CCCeeecCCCCCcEEEecCCC---------------------------------------------CCCceEEeecc
Q 024842          177 SL-EPPYAHNDVKPGNILITCRKG---------------------------------------------QPPLAILMDFG  210 (262)
Q Consensus       177 ~~-~~~ivH~dikp~Nill~~~~~---------------------------------------------~~~~~kl~Dfg  210 (262)
                      ++ +  |+||||||+|||++.++.                                             ....+||+|||
T Consensus       164 ~~~g--ivHrDikp~NIll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DfG  241 (397)
T 1wak_A          164 TKCR--IIHTDIKPENILLSVNEQYIRRLAAEATEWQRSGAPPPSGSAVSTAPATAGNFLVNPLEPKNAEKLKVKIADLG  241 (397)
T ss_dssp             HTTC--EECCCCSGGGEEECCCHHHHHHHHHHHC---------------------CCTTSCCTTSGGGGGGCCEEECCGG
T ss_pred             HhCC--EecCCCCHHHeeEeccchhhhhhhhhhHHHhhcCCCCCCCCccccCCcccccccccccccccccccceEecccc
Confidence            97 8  999999999999975530                                             11269999999


Q ss_pred             ceeeccccC--ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecccCC
Q 024842          211 SARPAQSKF--ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMFGR  262 (262)
Q Consensus       211 ~a~~~~~~~--~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~G~  262 (262)
                      ++.......  ..++..|.+||.+....+     ....||||+|+++|+|++|+
T Consensus       242 ~a~~~~~~~~~~~gt~~y~aPE~~~~~~~-----~~~~DiwslG~il~elltg~  290 (397)
T 1wak_A          242 NACWVHKHFTEDIQTRQYRSLEVLIGSGY-----NTPADIWSTACMAFELATGD  290 (397)
T ss_dssp             GCEETTBCSCSCCSCGGGCCHHHHHTSCC-----CTHHHHHHHHHHHHHHHHSS
T ss_pred             ccccccccCccCCCCCcccCChhhcCCCC-----CcHHHHHHHHHHHHHHhhCC
Confidence            998765432  356778888876543321     12357888888888887774

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}

Probab=99.97  E-value=2.5e-32  Score=223.99  Aligned_cols=196  Identities=20%  Similarity=0.258  Sum_probs=149.2

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc----hHHHHHHHHHHHHhh
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN----NEQLEMVREEIRVSS  100 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~----~~~~~~~~~E~~~l~  100 (262)
                      .++|++.+.||+|+||.||+|.+..+++                      .+++|.+....    ....+.+.+|+.+++
T Consensus         4 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~----------------------~~avK~~~~~~~~~~~~~~~~~~~E~~~l~   61 (305)
T 2wtk_C            4 IGKYLMGDLLGEGSYGKVKEVLDSETLC----------------------RRAVKILKKKKLRRIPNGEANVKKEIQLLR   61 (305)
T ss_dssp             -CCBCCCCEEEECSSCEEEEEEBTTTCC----------------------EEEEEEECHHHHHHSTTHHHHHHHHHHHHT
T ss_pred             ccceeEeeEEecCCCeEEEEEEECCCCc----------------------EEEEEEeccccccccchhHHHHHHHHHHHH
Confidence            3689999999999999999999876654                      56777654432    234577899999999


Q ss_pred             hCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCC
Q 024842          101 LFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEP  180 (262)
Q Consensus       101 ~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~  180 (262)
                      .++||||+++++++.        .......+++||++.++ |.+++...  ....+++..++.++.|++.||.|||+++ 
T Consensus        62 ~l~h~~i~~~~~~~~--------~~~~~~~~lv~e~~~~~-l~~~~~~~--~~~~~~~~~~~~~~~qi~~al~~LH~~~-  129 (305)
T 2wtk_C           62 RLRHKNVIQLVDVLY--------NEEKQKMYMVMEYCVCG-MQEMLDSV--PEKRFPVCQAHGYFCQLIDGLEYLHSQG-  129 (305)
T ss_dssp             TCCCTTBCCEEEEEE--------CC---CEEEEEECCSEE-HHHHHHHS--TTCSCCHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred             hcCCCCeeEEEEEEE--------cCCCCeEEEEehhccCC-HHHHHHhC--cccccCHHHHHHHHHHHHHHHHHHHHCC-
Confidence            999999999999863        23356789999998866 66666533  2345999999999999999999999999 


Q ss_pred             CeeecCCCCCcEEEecCCCCCCceEEeeccceeecccc-------CccCcccCCcccchhhhhhhhhhhhhcCcccchhe
Q 024842          181 PYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSK-------FALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQI  253 (262)
Q Consensus       181 ~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~-------~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~  253 (262)
                       ++|+||||+||+++.++    .++|+|||++......       ...++..|.+||.+.......   ....|+|++|+
T Consensus       130 -i~H~dlkp~NIl~~~~~----~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~---~~~~Di~slG~  201 (305)
T 2wtk_C          130 -IVHKDIKPGNLLLTTGG----TLKISALGVAEALHPFAADDTCRTSQGSPAFQPPEIANGLDTFS---GFKVDIWSAGV  201 (305)
T ss_dssp             -EECSCCSGGGEEECTTC----CEEECCCTTCEECCTTCSSCEECCCCSCGGGCCHHHHTCCSCEE---SHHHHHHHHHH
T ss_pred             -eeecCCCcccEEEcCCC----cEEeeccccccccCccccccccccCCCCCCCcChhhccCcccCC---cchhhHHHHHH
Confidence             99999999999998776    6999999999876432       124666777777553321110   11358888888


Q ss_pred             eheecccCC
Q 024842          254 LMRELMFGR  262 (262)
Q Consensus       254 ~~~~l~~G~  262 (262)
                      ++|+|++|+
T Consensus       202 il~~l~~g~  210 (305)
T 2wtk_C          202 TLYNITTGL  210 (305)
T ss_dssp             HHHHHHHSS
T ss_pred             HHHHHHhCC
Confidence            888888874

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*

Probab=99.97  E-value=2.2e-32  Score=228.35  Aligned_cols=192  Identities=19%  Similarity=0.252  Sum_probs=151.5

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccch-----------------H
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNN-----------------E   87 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~-----------------~   87 (262)
                      .++|++.+.||+|+||.||+|.+  +++                      .||+|.+.....                 .
T Consensus        30 ~~~y~~~~~lg~G~~g~V~~~~~--~~~----------------------~vavK~~~~~~~~~~~~~~~~~~~~~~~~~   85 (348)
T 2pml_X           30 INDYRIIRTLNQGKFNKIILCEK--DNK----------------------FYALKKYEKSLLEKKRDFTKSNNDKISIKS   85 (348)
T ss_dssp             ETTEEEEEEEECCSSCCEEEEEE--TTE----------------------EEEEEEEEHHHHSSCEEECCCSSSSCCEEE
T ss_pred             cCceEEEEEEcCCCCeEEEEEEc--CCc----------------------eEEEEEeecccccchhhhccccchhhhHHh
Confidence            46899999999999999999998  444                      566666543311                 1


Q ss_pred             HHHHHHHHHHHhhhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhH------HHHhhhcCCCCCHHHH
Q 024842           88 QLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDH------AKVMQTKKEFFSTSDV  161 (262)
Q Consensus        88 ~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~------~~~~~~~~~~~~~~~~  161 (262)
                      ..+.+.+|+.+++.++||||+++++++.          ..+..+++||++.+++|.++      +.  ......+++..+
T Consensus        86 ~~~~~~~E~~~l~~l~h~~i~~~~~~~~----------~~~~~~lv~e~~~~~~L~~~~~~~~~l~--~~~~~~~~~~~~  153 (348)
T 2pml_X           86 KYDDFKNELQIITDIKNEYCLTCEGIIT----------NYDEVYIIYEYMENDSILKFDEYFFVLD--KNYTCFIPIQVI  153 (348)
T ss_dssp             HHHHHHHHHHHHTTCCCTTBCCCSEEEE----------SSSEEEEEEECCTTCBSSEESSSEESSC--SSSCCCCCHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCCcceEEEEEe----------eCCeEEEEEeccCCCcHHHHHHHhhhhh--hccccCCCHHHH
Confidence            1267889999999999999999999873          35679999999999999987      43  111466999999


Q ss_pred             HHHHHHHHHHHHHHHc-CCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeecccc---CccCcccCCcccchhhhhh
Q 024842          162 LQIFYQICAGLKHMHS-LEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSK---FALGQRRYSCRNGLLSIVL  237 (262)
Q Consensus       162 ~~i~~ql~~~l~~lH~-~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~---~~~~~~~~~~~~d~~s~g~  237 (262)
                      +.++.|++.||.|||+ .+  ++|+||||+||+++.++    .++|+|||++......   ...++..|.+||.+.....
T Consensus       154 ~~i~~qi~~~l~~lH~~~~--i~H~dl~p~Nil~~~~~----~~kl~dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  227 (348)
T 2pml_X          154 KCIIKSVLNSFSYIHNEKN--ICHRDVKPSNILMDKNG----RVKLSDFGESEYMVDKKIKGSRGTYEFMPPEFFSNESS  227 (348)
T ss_dssp             HHHHHHHHHHHHHHHHTSC--EECCCCCGGGEEECTTS----CEEECCCTTCEECBTTEECSSCSCGGGCCGGGGSSCCC
T ss_pred             HHHHHHHHHHHHHHhccCC--EeecCCChHhEEEcCCC----cEEEeccccccccccccccCCCCCcCccCchhhcCCCC
Confidence            9999999999999998 88  99999999999998776    6999999999875432   2356777888776643311


Q ss_pred             hhhhhhh-cCcccchheeheecccCC
Q 024842          238 HLSELLS-CGTVRVIQILMRELMFGR  262 (262)
Q Consensus       238 ~~~e~~~-~~~v~~~g~~~~~l~~G~  262 (262)
                          ..+ ..|+|++|+++++|++|+
T Consensus       228 ----~~~~~~Di~slG~il~~l~~g~  249 (348)
T 2pml_X          228 ----YNGAKVDIWSLGICLYVMFYNV  249 (348)
T ss_dssp             ----EEHHHHHHHHHHHHHHHHHHSS
T ss_pred             ----CCcchhhHHHHHHHHHHHHhCC
Confidence                111 368888888888888874

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A

Probab=99.97  E-value=3.8e-33  Score=232.08  Aligned_cols=180  Identities=18%  Similarity=0.234  Sum_probs=136.8

Q ss_pred             ecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc--------hHHHHHHHH
Q 024842           23 INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN--------NEQLEMVRE   94 (262)
Q Consensus        23 ~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~--------~~~~~~~~~   94 (262)
                      +..++|++.+.||+|+||.||+|++  +++                      .||+|++....        ....+.+.+
T Consensus        17 ~~~~~y~~~~~lG~G~~g~V~~~~~--~~~----------------------~vAvK~~~~~~~~~~~~~~~~~~~~~~~   72 (336)
T 2vuw_A           17 LPTEKLQRCEKIGEGVFGEVFQTIA--DHT----------------------PVAIKIIAIEGPDLVNGSHQKTFEEILP   72 (336)
T ss_dssp             SCHHHHHTCEEEEEETTEEEEEEEE--TTE----------------------EEEEEEEEESCSSCBTTBCCBCHHHHHH
T ss_pred             cccccchheeeecccCceEEEEEEe--CCc----------------------eEEEEEEecCCccccccccchhHHHHHH
Confidence            3457899999999999999999997  333                      57777765432        222366778


Q ss_pred             HHHHhhhCC--------------------------CCCccchhhhhHHHhhhc---cCCCCcceeEEEEeecCCCchhhH
Q 024842           95 EIRVSSLFS--------------------------HRNLLPLLDHAIIAVKAN---QEGSWKHEAYLLFPVHLDGTLLDH  145 (262)
Q Consensus        95 E~~~l~~l~--------------------------h~~i~~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~L~~~  145 (262)
                      |+.+++.++                          ||||+++++++.......   .........|++|||+.+|++.+.
T Consensus        73 E~~~l~~l~~l~~~~~~~h~niv~l~~~~~~~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~  152 (336)
T 2vuw_A           73 EIIISKELSLLSGEVCNRTEGFIGLNSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQ  152 (336)
T ss_dssp             HHHHHHHHHHGGGCSSSBCCCBCCEEEEEEEESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGG
T ss_pred             HHHHHHHHHHhhccccccCCchhhhcceeEecCCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHH
Confidence            888887776                          777788887774310000   000125679999999999987766


Q ss_pred             HHHhhhcCCCCCHHHHHHHHHHHHHHHHHHH-cCCCCeeecCCCCCcEEEecCCCC----------------CCceEEee
Q 024842          146 AKVMQTKKEFFSTSDVLQIFYQICAGLKHMH-SLEPPYAHNDVKPGNILITCRKGQ----------------PPLAILMD  208 (262)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH-~~~~~ivH~dikp~Nill~~~~~~----------------~~~~kl~D  208 (262)
                      +.     ...+++..++.++.||+.||.||| +++  |+||||||+|||++.++..                ...+||+|
T Consensus       153 ~~-----~~~~~~~~~~~i~~qi~~aL~~lH~~~~--ivHrDlKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~D  225 (336)
T 2vuw_A          153 MR-----TKLSSLATAKSILHQLTASLAVAEASLR--FEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSIID  225 (336)
T ss_dssp             GT-----TTCCCHHHHHHHHHHHHHHHHHHHHHHC--CBCSCCCGGGEEEEECSCSEEEEEETTEEEEEECTTEEEEECC
T ss_pred             HH-----hcCCCHHHHHHHHHHHHHHHHHHHHhCC--EeECCCCHHHEEEeccCCcceeeeccCccccccCCCceEEEee
Confidence            52     245899999999999999999999 888  9999999999999876521                12699999


Q ss_pred             ccceeeccccCccCcccCCcccchh
Q 024842          209 FGSARPAQSKFALGQRRYSCRNGLL  233 (262)
Q Consensus       209 fg~a~~~~~~~~~~~~~~~~~~d~~  233 (262)
                      ||+|+........+++.|++||-+.
T Consensus       226 FG~a~~~~~~~~~gt~~y~aPE~~~  250 (336)
T 2vuw_A          226 YTLSRLERDGIVVFCDVSMDEDLFT  250 (336)
T ss_dssp             CTTCBEEETTEEECCCCTTCSGGGC
T ss_pred             ccccEecCCCcEEEeecccChhhhc
Confidence            9999988877778888899888553

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}

Probab=99.97  E-value=3e-32  Score=231.32  Aligned_cols=196  Identities=21%  Similarity=0.294  Sum_probs=143.0

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCCC
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSH  104 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~h  104 (262)
                      ..+|++.+.||+|+||.||+|++..+++                       +++|++.....    ...+|+.+++.++|
T Consensus        39 ~~~Y~~~~~lG~G~~g~V~~a~~~~~~~-----------------------~aikk~~~~~~----~~~~E~~il~~l~h   91 (394)
T 4e7w_A           39 EIAYTNCKVIGNGSFGVVFQAKLVESDE-----------------------VAIKKVLQDKR----FKNRELQIMRIVKH   91 (394)
T ss_dssp             EEEEEEEEEEEEETTEEEEEEEETTTEE-----------------------EEEEEEECCTT----SCCHHHHHHHTCCC
T ss_pred             cceEEEeEEEeeCCCeEEEEEEECCCCe-----------------------EEEEEEecCcc----hHHHHHHHHHhCCC
Confidence            4689999999999999999999875533                       55555543221    12368999999999


Q ss_pred             CCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeee
Q 024842          105 RNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAH  184 (262)
Q Consensus       105 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH  184 (262)
                      |||+++++++...    .........+++|||+.++ +.+.+.........+++..++.++.|++.||.|||+.+  |+|
T Consensus        92 ~niv~l~~~~~~~----~~~~~~~~~~lv~e~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~--ivH  164 (394)
T 4e7w_A           92 PNVVDLKAFFYSN----GDKKDEVFLNLVLEYVPET-VYRASRHYAKLKQTMPMLLIKLYMYQLLRSLAYIHSIG--ICH  164 (394)
T ss_dssp             TTBCCEEEEEEEE----SSSSSCEEEEEEEECCSEE-HHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHTT--EEC
T ss_pred             CCcceEEEEEEec----CCCCCceEEEEEeeccCcc-HHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHCC--ccC
Confidence            9999999887421    0112234478999988764 44444443344567999999999999999999999999  999


Q ss_pred             cCCCCCcEEEe-cCCCCCCceEEeeccceeeccccC----ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecc
Q 024842          185 NDVKPGNILIT-CRKGQPPLAILMDFGSARPAQSKF----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELM  259 (262)
Q Consensus       185 ~dikp~Nill~-~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~  259 (262)
                      |||||+|||++ .++    .+||+|||+|.......    ..+++.|.+||.+....    ......||||+|+++|+|+
T Consensus       165 rDlkp~Nill~~~~~----~~kL~DFG~a~~~~~~~~~~~~~~t~~y~aPE~~~~~~----~~~~~~DiwSlG~il~ell  236 (394)
T 4e7w_A          165 RDIKPQNLLLDPPSG----VLKLIDFGSAKILIAGEPNVSYICSRYYRAPELIFGAT----NYTTNIDIWSTGCVMAELM  236 (394)
T ss_dssp             SCCSGGGEEEETTTT----EEEECCCTTCEECCTTCCCCSSCSCGGGCCHHHHTTCS----SCCTHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHEEEcCCCC----cEEEeeCCCcccccCCCCCcccccCcCccCHHHHcCCC----CCCcHHHHHHHHHHHHHHH
Confidence            99999999998 454    79999999998764332    34566677777553211    1122357888888888887


Q ss_pred             cCC
Q 024842          260 FGR  262 (262)
Q Consensus       260 ~G~  262 (262)
                      +|+
T Consensus       237 ~g~  239 (394)
T 4e7w_A          237 QGQ  239 (394)
T ss_dssp             HSS
T ss_pred             hCC
Confidence            774

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*

Probab=99.97  E-value=1.1e-31  Score=225.33  Aligned_cols=197  Identities=22%  Similarity=0.291  Sum_probs=143.1

Q ss_pred             cCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc-----------chHHHHHH
Q 024842           24 NENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ-----------NNEQLEMV   92 (262)
Q Consensus        24 ~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~-----------~~~~~~~~   92 (262)
                      ..++|++.+.||+|+||.||+|.+.. ++                      .||+|++...           .....+.+
T Consensus        20 ~~~~y~~~~~lg~G~~g~V~~~~~~~-~~----------------------~vavK~~~~~~~~~~~~~~~~~~~~~~~~   76 (362)
T 3pg1_A           20 MQSPYTVQRFISSGSYGAVCAGVDSE-GI----------------------PVAIKRVFNTVSDGRTVNILSDSFLCKRV   76 (362)
T ss_dssp             TTCSCEEEEEEEEETTEEEEEEECTT-SC----------------------EEEEEEECEECCTTSCEEGGGSHHHHHHH
T ss_pred             hccceEEeEEeccCCCEEEEEEECCC-CC----------------------eEEEEeccccCCccchhhhhhhhhHHHHH
Confidence            36789999999999999999998754 33                      5666655332           23335788


Q ss_pred             HHHHHHhhhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHH
Q 024842           93 REEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGL  172 (262)
Q Consensus        93 ~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l  172 (262)
                      .+|+.+++.++||||+++++++...     ........+++||++. ++|.+.+.   .....+++..++.++.|++.||
T Consensus        77 ~~E~~~l~~l~h~~iv~~~~~~~~~-----~~~~~~~~~lv~e~~~-~~l~~~~~---~~~~~~~~~~~~~~~~qi~~~l  147 (362)
T 3pg1_A           77 LREIRLLNHFHHPNILGLRDIFVHF-----EEPAMHKLYLVTELMR-TDLAQVIH---DQRIVISPQHIQYFMYHILLGL  147 (362)
T ss_dssp             HHHHHHHHHCCCTTBCCCSEEEEEC-----CTTTCCEEEEEEECCS-EEHHHHHH---CTTSCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCcCccceeeeEEec-----cCCCcceEEEEEccCC-CCHHHHHH---hcccCCCHHHHHHHHHHHHHHH
Confidence            9999999999999999999987420     1123456899999987 67877765   2345699999999999999999


Q ss_pred             HHHHcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC----ccCcccCCcccchhhhhhhhhhhhhcCcc
Q 024842          173 KHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF----ALGQRRYSCRNGLLSIVLHLSELLSCGTV  248 (262)
Q Consensus       173 ~~lH~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v  248 (262)
                      .|||+++  ++||||||+||+++.++    .+||+|||++.......    ..+++.|.+||.+.....    .....|+
T Consensus       148 ~~lH~~~--ivH~Dlkp~NIl~~~~~----~~kl~Dfg~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~----~~~~~Di  217 (362)
T 3pg1_A          148 HVLHEAG--VVHRDLHPGNILLADNN----DITICDFNLAREDTADANKTHYVTHRWYRAPELVMQFKG----FTKLVDM  217 (362)
T ss_dssp             HHHHHTT--CCCCCCCGGGEEECTTC----CEEECCTTC---------------CGGGCCHHHHTTCTT----CCTHHHH
T ss_pred             HHHHHCc--CEecCCChHHEEEcCCC----CEEEEecCcccccccccccceecccceecCcHHhcCCCC----CCcHhHH
Confidence            9999999  99999999999998776    69999999997544322    245566777765433111    1123577


Q ss_pred             cchheeheecccCC
Q 024842          249 RVIQILMRELMFGR  262 (262)
Q Consensus       249 ~~~g~~~~~l~~G~  262 (262)
                      |++|+++|+|++|+
T Consensus       218 wslG~il~~l~~g~  231 (362)
T 3pg1_A          218 WSAGCVMAEMFNRK  231 (362)
T ss_dssp             HHHHHHHHHHHHSS
T ss_pred             HhHHHHHHHHHhCC
Confidence            77777777777764

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A

Probab=99.97  E-value=5.8e-32  Score=221.26  Aligned_cols=200  Identities=21%  Similarity=0.290  Sum_probs=146.0

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCCC
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSH  104 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~h  104 (262)
                      .++|++.+.||+|+||.||+|++..+++                      .+++|++... ....+.+.+|+.+++.++|
T Consensus         5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~----------------------~vaiK~~~~~-~~~~~~~~~E~~~l~~l~h   61 (303)
T 1zy4_A            5 ASDFEEIAVLGQGAFGQVVKARNALDSR----------------------YYAIKKIRHT-EEKLSTILSEVMLLASLNH   61 (303)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTCC----------------------EEEEEEEEEE-HHHHHHHHHHHHHHTTCCC
T ss_pred             cccchhhheeccCCcEEEEEEEEcCCCe----------------------EEEEEEEecc-HHHHHHHHHHHHHHHhcCc
Confidence            4589999999999999999999876654                      6788877543 3445778899999999999


Q ss_pred             CCccchhhhhHHHh---hhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCC
Q 024842          105 RNLLPLLDHAIIAV---KANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPP  181 (262)
Q Consensus       105 ~~i~~~~~~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~  181 (262)
                      |||+++++.+....   ............+++||++.+++|.+++..   ....+++..++.++.|++.||.|||+++  
T Consensus        62 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~---~~~~~~~~~~~~i~~qi~~~l~~LH~~~--  136 (303)
T 1zy4_A           62 QYVVRYYAAWLERRNFVKPMTAVKKKSTLFIQMEYCENGTLYDLIHS---ENLNQQRDEYWRLFRQILEALSYIHSQG--  136 (303)
T ss_dssp             TTBCCEEEEEEECCCCCC------CEEEEEEEEECCCSCBHHHHHHH---SCGGGCHHHHHHHHHHHHHHHHHHHHTT--
T ss_pred             hHHHHHHHHHHhhcchhhhhcccccCCceEEEEecCCCCCHHHhhhc---cccccchHHHHHHHHHHHHHHHHHHhCC--
Confidence            99999998763100   000011235678999999999999998863   3345889999999999999999999999  


Q ss_pred             eeecCCCCCcEEEecCCCCCCceEEeeccceeecccc-------------------CccCcccCCcccchhhhhhhhhhh
Q 024842          182 YAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSK-------------------FALGQRRYSCRNGLLSIVLHLSEL  242 (262)
Q Consensus       182 ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~-------------------~~~~~~~~~~~~d~~s~g~~~~e~  242 (262)
                      ++|+||||+||+++.++    .++|+|||++......                   ...++..|.+||.+...+    ..
T Consensus       137 i~H~dlkp~Nil~~~~~----~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~----~~  208 (303)
T 1zy4_A          137 IIHRDLKPMNIFIDESR----NVKIGDFGLAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVATEVLDGTG----HY  208 (303)
T ss_dssp             CCCSCCCGGGEEECTTS----CEEECCCCCCSCTTC-------------------------CTTSCHHHHTSCS----CC
T ss_pred             eecccCCHHhEEEcCCC----CEEEeeCcchhhcccccchhccccccccccccccccCCCcccccCcccccCCC----CC
Confidence            99999999999998776    6999999999765421                   123455566665442211    01


Q ss_pred             hhcCcccchheeheeccc
Q 024842          243 LSCGTVRVIQILMRELMF  260 (262)
Q Consensus       243 ~~~~~v~~~g~~~~~l~~  260 (262)
                      ....|+|++|+++|+|++
T Consensus       209 ~~~~Di~slG~il~~l~~  226 (303)
T 1zy4_A          209 NEKIDMYSLGIIFFEMIY  226 (303)
T ss_dssp             CTHHHHHHHHHHHHHHHS
T ss_pred             cchhhHHHHHHHHHHHHh
Confidence            123567777777766664

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}

Probab=99.97  E-value=1.9e-32  Score=233.48  Aligned_cols=200  Identities=22%  Similarity=0.255  Sum_probs=138.8

Q ss_pred             CceEE-EEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCCC
Q 024842           26 NRYRI-LRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSH  104 (262)
Q Consensus        26 ~~y~~-~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~h  104 (262)
                      +.|.+ .++||+|+||.||+|++..+.                    .+..||+|++......  ..+.+|+.+++.++|
T Consensus        20 ~~y~~~g~~lG~G~~g~Vy~~~~~~~~--------------------~~~~vaiK~~~~~~~~--~~~~~E~~~l~~l~h   77 (405)
T 3rgf_A           20 DLFEYEGCKVGRGTYGHVYKAKRKDGK--------------------DDKDYALKQIEGTGIS--MSACREIALLRELKH   77 (405)
T ss_dssp             HHEECSSCCCC-----EEEEEEESSSS--------------------CCCCEEEEECSSSSCC--HHHHHHHHHHHHCCC
T ss_pred             hhhhhcCcEeeecCCeEEEEEEEccCC--------------------CCeEEEEEEECCCCCC--HHHHHHHHHHHhcCC
Confidence            45776 457999999999999976321                    1346888877644322  457789999999999


Q ss_pred             CCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhc-----CCCCCHHHHHHHHHHHHHHHHHHHcCC
Q 024842          105 RNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTK-----KEFFSTSDVLQIFYQICAGLKHMHSLE  179 (262)
Q Consensus       105 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~-----~~~~~~~~~~~i~~ql~~~l~~lH~~~  179 (262)
                      |||+++++++..        ......+++|||+. ++|.+++......     ...+++..++.++.||+.||.|||+.+
T Consensus        78 pniv~~~~~~~~--------~~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~~  148 (405)
T 3rgf_A           78 PNVISLQKVFLS--------HADRKVWLLFDYAE-HDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHANW  148 (405)
T ss_dssp             TTBCCCCEEEEE--------TTTTEEEEEEECCS-EEHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCeeeEeeEEec--------CCCCeEEEEEeCCC-CCHHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence            999999998742        33567899999876 5888777643321     224899999999999999999999999


Q ss_pred             CCeeecCCCCCcEEEecCCCCCCceEEeeccceeecccc--------CccCcccCCcccchhhhhhhhhhhhhcCcccch
Q 024842          180 PPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSK--------FALGQRRYSCRNGLLSIVLHLSELLSCGTVRVI  251 (262)
Q Consensus       180 ~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~--------~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~  251 (262)
                        |+||||||+|||+..+++....+||+|||++......        ...++..|.+||-+.....    .....||||+
T Consensus       149 --ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~----~~~~~DiwSl  222 (405)
T 3rgf_A          149 --VLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLKPLADLDPVVVTFWYRAPELLLGARH----YTKAIDIWAI  222 (405)
T ss_dssp             --CCCCCCCGGGEEECCSSTTTTCEEECCTTCCC----------------CCCTTCCHHHHTTCCS----CCHHHHHHHH
T ss_pred             --EeCCCcCHHHeEEecCCCCCCcEEEEECCCceecCCCCcccccCCCceecCcccCchhhcCCCc----ccchhhhHHH
Confidence              9999999999999644333347999999999876432        1345677777775533211    1123578888


Q ss_pred             heeheecccCC
Q 024842          252 QILMRELMFGR  262 (262)
Q Consensus       252 g~~~~~l~~G~  262 (262)
                      |+++|+|++|+
T Consensus       223 G~il~ell~g~  233 (405)
T 3rgf_A          223 GCIFAELLTSE  233 (405)
T ss_dssp             HHHHHHHHHSS
T ss_pred             HHHHHHHHhCC
Confidence            88888888774

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*

Probab=99.97  E-value=5.5e-32  Score=224.27  Aligned_cols=196  Identities=23%  Similarity=0.267  Sum_probs=148.1

Q ss_pred             CCceEEE-EEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc--chHHHHHHHHHHHHhhh
Q 024842           25 ENRYRIL-RQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ--NNEQLEMVREEIRVSSL  101 (262)
Q Consensus        25 ~~~y~~~-~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~--~~~~~~~~~~E~~~l~~  101 (262)
                      .++|.+. +.||+|+||.||+|++..+++                      .||+|.+...  .......+.+|+.+++.
T Consensus        27 ~~~y~~~~~~lG~G~~g~V~~~~~~~~~~----------------------~vavK~~~~~~~~~~~~~~~~~e~~~l~~   84 (327)
T 3lm5_A           27 NNFYILTSKELGRGKFAVVRQCISKSTGQ----------------------EYAAKFLKKRRRGQDCRAEILHEIAVLEL   84 (327)
T ss_dssp             HHHEEEEEEEEEEETTEEEEEEEETTTCC----------------------EEEEEEEESEETTEECHHHHHHHHHHHHH
T ss_pred             hhEEeeccceeCCCCCeEEEEEEECCCCC----------------------EEEEEEEehhhcchHHHHHHHHHHHHHHh
Confidence            4678887 899999999999999987655                      5677765543  22234678889999998


Q ss_pred             CC-CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCC
Q 024842          102 FS-HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEP  180 (262)
Q Consensus       102 l~-h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~  180 (262)
                      +. ||||+++++++          ......+++|||+.+++|.+++..  .....+++..++.++.|++.||+|||+.+ 
T Consensus        85 l~~~~~iv~~~~~~----------~~~~~~~lv~e~~~~~~L~~~~~~--~~~~~~~~~~~~~i~~ql~~~L~~LH~~g-  151 (327)
T 3lm5_A           85 AKSCPRVINLHEVY----------ENTSEIILILEYAAGGEIFSLCLP--ELAEMVSENDVIRLIKQILEGVYYLHQNN-  151 (327)
T ss_dssp             TTTCTTBCCEEEEE----------ECSSEEEEEEECCTTEEGGGGGSS--CC-CCCCHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred             ccCCCCEEEEEEEE----------EeCCeEEEEEEecCCCcHHHHHHH--hcccCCCHHHHHHHHHHHHHHHHHHHHCC-
Confidence            85 69999999987          346779999999999999988742  12356999999999999999999999999 


Q ss_pred             CeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC----ccCcccCCcccchhhhhhhhhhhhhcCcccchheehe
Q 024842          181 PYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMR  256 (262)
Q Consensus       181 ~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~  256 (262)
                       ++||||||+||+++.... ...+||+|||++.......    ..+++.|.+||.+....+     ....|+|++|+++|
T Consensus       152 -ivH~Dikp~NIl~~~~~~-~~~~kL~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-----~~~~DiwslG~il~  224 (327)
T 3lm5_A          152 -IVHLDLKPQNILLSSIYP-LGDIKIVDFGMSRKIGHACELREIMGTPEYLAPEILNYDPI-----TTATDMWNIGIIAY  224 (327)
T ss_dssp             -EECSCCCGGGEEESCBTT-BCCEEECCGGGCEEC---------CCCGGGCCHHHHTTCCC-----CTHHHHHHHHHHHH
T ss_pred             -eecCcCChHHEEEecCCC-CCcEEEeeCccccccCCccccccccCCcCccCCeeecCCCC-----CchhhHHHHHHHHH
Confidence             999999999999986221 1269999999998765432    356777777775432211     12357777777777


Q ss_pred             ecccCC
Q 024842          257 ELMFGR  262 (262)
Q Consensus       257 ~l~~G~  262 (262)
                      +|++|+
T Consensus       225 ~ll~g~  230 (327)
T 3lm5_A          225 MLLTHT  230 (327)
T ss_dssp             HHHHSS
T ss_pred             HHHhCC
Confidence            777764

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=99.97  E-value=3.4e-32  Score=239.37  Aligned_cols=193  Identities=22%  Similarity=0.280  Sum_probs=146.8

Q ss_pred             ceeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHh
Q 024842           20 DVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVS   99 (262)
Q Consensus        20 ~~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l   99 (262)
                      ...+..++|++.+.||+|+||.||+|.+..+                       ..||+|++..... ..+.+.+|+.++
T Consensus       261 ~~~i~~~~~~~~~~lG~G~fg~Vy~~~~~~~-----------------------~~vavK~~~~~~~-~~~~~~~E~~~l  316 (535)
T 2h8h_A          261 AWEIPRESLRLEVKLGQGCFGEVWMGTWNGT-----------------------TRVAIKTLKPGTM-SPEAFLQEAQVM  316 (535)
T ss_dssp             CSBCCGGGEEEEEEEEECSSEEEEEEEETTT-----------------------EEEEEEEECTTSS-CHHHHHHHHHHH
T ss_pred             ceecchhhhhhheecccCCCeEEEEEEECCC-----------------------ceEEEEEeCCCCC-CHHHHHHHHHHH
Confidence            3446778999999999999999999998642                       2578887765432 236788999999


Q ss_pred             hhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCC
Q 024842          100 SLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLE  179 (262)
Q Consensus       100 ~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~  179 (262)
                      +.++||||+++++++.           ....+++|||+.+++|.+++....  ...+++..++.++.|++.||.|||+++
T Consensus       317 ~~l~hpniv~~~~~~~-----------~~~~~lv~e~~~~gsL~~~l~~~~--~~~l~~~~~~~i~~qi~~~L~~LH~~~  383 (535)
T 2h8h_A          317 KKLRHEKLVQLYAVVS-----------EEPIYIVTEYMSKGSLLDFLKGET--GKYLRLPQLVDMAAQIASGMAYVERMN  383 (535)
T ss_dssp             HHCCCTTBCCEEEEEC-----------SSSCEEEECCCTTEEHHHHHSHHH--HTTCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HhCCCCCEeeEEEEEe-----------eccceEeeehhcCCcHHHHHhhcC--CCCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence            9999999999998762           256899999999999999886322  245899999999999999999999999


Q ss_pred             CCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC------ccCcccCCcccchhhhhhhhhhhhhcCcccchhe
Q 024842          180 PPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF------ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQI  253 (262)
Q Consensus       180 ~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~------~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~  253 (262)
                        |+||||||+|||++.++    .+||+|||++.......      ..++..|++||.+..-.     .....|||++|+
T Consensus       384 --ivHrDlkp~NIll~~~~----~~kl~DFG~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-----~~~~sDvwSlGv  452 (535)
T 2h8h_A          384 --YVHRDLRAANILVGENL----VCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGR-----FTIKSDVWSFGI  452 (535)
T ss_dssp             --CCCSCCSGGGEEECGGG----CEEECCTTSTTTCCCHHHHTTCSTTSCGGGSCHHHHHHCC-----CCHHHHHHHHHH
T ss_pred             --eeCCCCCHhhEEEcCCC----cEEEcccccceecCCCceecccCCcCcccccCHHHhccCC-----CCchhhHHHHHH
Confidence              99999999999998776    69999999998654321      22344566666332111     111245555555


Q ss_pred             eheeccc
Q 024842          254 LMRELMF  260 (262)
Q Consensus       254 ~~~~l~~  260 (262)
                      ++|||++
T Consensus       453 ~l~el~t  459 (535)
T 2h8h_A          453 LLTELTT  459 (535)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHHh
Confidence            5555555

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=99.97  E-value=5.7e-32  Score=241.95  Aligned_cols=192  Identities=15%  Similarity=0.211  Sum_probs=143.2

Q ss_pred             ecCCceEEE-EEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc--chHHHHHHHHHHHHh
Q 024842           23 INENRYRIL-RQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ--NNEQLEMVREEIRVS   99 (262)
Q Consensus        23 ~~~~~y~~~-~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~--~~~~~~~~~~E~~~l   99 (262)
                      ++...+.+. +.||+|+||.||+|.+....                    .+..||+|++...  .....+.+.+|+.++
T Consensus       365 ~~~~~~~l~~~~LG~G~fG~Vy~~~~~~~~--------------------~~~~vAvK~~~~~~~~~~~~~~~~~E~~il  424 (635)
T 4fl3_A          365 LDRKLLTLEDKELGSGNFGTVKKGYYQMKK--------------------VVKTVAVKILKNEANDPALKDELLAEANVM  424 (635)
T ss_dssp             CCGGGEEEEEEEEEECSSEEEEEEEEECSS--------------------CEEEEEEEEECGGGGCGGGHHHHHHHHHHH
T ss_pred             ccchhccccCCEeccCCCEEEEEEEEcCCC--------------------cceEEEEEEeccccCCHHHHHHHHHHHHHH
Confidence            344455554 48999999999999764321                    1236788877643  233457889999999


Q ss_pred             hhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCC
Q 024842          100 SLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLE  179 (262)
Q Consensus       100 ~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~  179 (262)
                      +.++||||+++++++.           ....+++|||+.+++|.+++.    ....+++..++.++.||+.||+|||+++
T Consensus       425 ~~l~hpnIv~l~~~~~-----------~~~~~lv~E~~~~g~L~~~l~----~~~~l~~~~~~~i~~qi~~~L~yLH~~~  489 (635)
T 4fl3_A          425 QQLDNPYIVRMIGICE-----------AESWMLVMEMAELGPLNKYLQ----QNRHVKDKNIIELVHQVSMGMKYLEESN  489 (635)
T ss_dssp             HHCCCTTBCCEEEEEE-----------SSSEEEEEECCTTEEHHHHHH----HCTTCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HhCCCCCEeeEEEEEe-----------cCCEEEEEEccCCCCHHHHHh----hCCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            9999999999999762           345789999999999999986    4456999999999999999999999999


Q ss_pred             CCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC--------ccCcccCCcccchhhhhhhhhhhhhcCcccch
Q 024842          180 PPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF--------ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVI  251 (262)
Q Consensus       180 ~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~--------~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~  251 (262)
                        |+||||||+|||++.++    .+||+|||++.......        ..++..|.+||.+....     .....||||+
T Consensus       490 --iiHrDLkp~NILl~~~~----~~kL~DFGla~~~~~~~~~~~~~~~~~~t~~y~APE~~~~~~-----~~~~sDvwSl  558 (635)
T 4fl3_A          490 --FVHRDLAARNVLLVTQH----YAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYK-----FSSKSDVWSF  558 (635)
T ss_dssp             --CCCSCCSGGGEEEEETT----EEEECCTTHHHHTTC-------------CGGGSCHHHHHHCC-----CCHHHHHHHH
T ss_pred             --EeCCCCChHhEEEeCCC----CEEEEEcCCccccccCccccccccCCCCceeeeChhhhcCCC-----CCcHHHHHHH
Confidence              99999999999999877    79999999998664322        12334566666442111     1123466666


Q ss_pred             heeheeccc
Q 024842          252 QILMRELMF  260 (262)
Q Consensus       252 g~~~~~l~~  260 (262)
                      |+++|||++
T Consensus       559 Gv~l~ellt  567 (635)
T 4fl3_A          559 GVLMWEAFS  567 (635)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHh
Confidence            666666665

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=99.97  E-value=5.3e-32  Score=222.26  Aligned_cols=188  Identities=26%  Similarity=0.330  Sum_probs=148.1

Q ss_pred             eEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc----chHHHHHHHHHHHHhhhCC
Q 024842           28 YRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ----NNEQLEMVREEIRVSSLFS  103 (262)
Q Consensus        28 y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~----~~~~~~~~~~E~~~l~~l~  103 (262)
                      |...+.||+|+||.||+|.+.  +                      ..+++|++...    .....+.+.+|+.+++.++
T Consensus        33 ~~~~~~lg~G~~g~Vy~~~~~--~----------------------~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~   88 (307)
T 2nru_A           33 SVGGNKMGEGGFGVVYKGYVN--N----------------------TTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQ   88 (307)
T ss_dssp             TTTCCEEEECSSEEEEEEESS--S----------------------CEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHCC
T ss_pred             cccCCccccCCCeEEEEEEEC--C----------------------ceEEEEEEecccCcchHHHHHHHHHHHHHHHhcC
Confidence            445588999999999999863  2                      25677765432    3344678899999999999


Q ss_pred             CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCee
Q 024842          104 HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYA  183 (262)
Q Consensus       104 h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~iv  183 (262)
                      ||||+++++++          ......+++|+++.+++|.+++.... ....+++..++.++.|++.||.|||+.+  ++
T Consensus        89 h~~i~~~~~~~----------~~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~i~~~i~~~l~~lH~~~--i~  155 (307)
T 2nru_A           89 HENLVELLGFS----------SDGDDLCLVYVYMPNGSLLDRLSCLD-GTPPLSWHMRCKIAQGAANGINFLHENH--HI  155 (307)
T ss_dssp             CTTBCCEEEEE----------CSSSSCEEEEECCTTCBHHHHHHTGG-GCCCCCHHHHHHHHHHHHHHHHHHHHTT--EE
T ss_pred             CCCeEEEEEEE----------ecCCceEEEEEecCCCcHHHHHHhcc-CCCCCCHHHHHHHHHHHHHHHHHHhcCC--ee
Confidence            99999999987          34567899999999999999886433 2346999999999999999999999998  99


Q ss_pred             ecCCCCCcEEEecCCCCCCceEEeeccceeecccc-------CccCcccCCcccchhhhhhhhhhhhhcCcccchheehe
Q 024842          184 HNDVKPGNILITCRKGQPPLAILMDFGSARPAQSK-------FALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMR  256 (262)
Q Consensus       184 H~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~-------~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~  256 (262)
                      ||||||+||+++.++    .++|+|||++......       ...+++.|.+||.+..      ......|+|++|+++|
T Consensus       156 H~dlkp~Nili~~~~----~~kl~Dfg~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~------~~~~~~Dv~slG~il~  225 (307)
T 2nru_A          156 HRDIKSANILLDEAF----TAKISDFGLARASEKFAQTVMTSRIVGTTAYMAPEALRG------EITPKSDIYSFGVVLL  225 (307)
T ss_dssp             CSCCCGGGEEECTTC----CEEECCCTTCEECCSCSSCEECSSCCSCGGGCCHHHHTT------EECTHHHHHHHHHHHH
T ss_pred             cCCCCHHHEEEcCCC----cEEEeecccccccccccccccccccCCCcCcCChHHhcC------CCCccchhHHHHHHHH
Confidence            999999999998766    6999999999865432       2356777888874422      1223467888888888


Q ss_pred             ecccCC
Q 024842          257 ELMFGR  262 (262)
Q Consensus       257 ~l~~G~  262 (262)
                      +|++|+
T Consensus       226 ~l~~g~  231 (307)
T 2nru_A          226 EIITGL  231 (307)
T ss_dssp             HHHHCC
T ss_pred             HHHHCC
Confidence            887774

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}

Probab=99.97  E-value=1.8e-32  Score=225.64  Aligned_cols=196  Identities=26%  Similarity=0.262  Sum_probs=145.1

Q ss_pred             eeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccch------HHHHHHHH
Q 024842           21 VWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNN------EQLEMVRE   94 (262)
Q Consensus        21 ~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~------~~~~~~~~   94 (262)
                      .....++|++.+.||+|+||.||+|++..+++                      .|++|.+.....      .....+.+
T Consensus        26 ~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~----------------------~vavK~~~~~~~~~~~~~~~~~~~~~   83 (312)
T 2iwi_A           26 REAFEAEYRLGPLLGKGGFGTVFAGHRLTDRL----------------------QVAIKVIPRNRVLGWSPLSDSVTCPL   83 (312)
T ss_dssp             -------CEEEEEEEEETTEEEEEEECTTTCC----------------------EEEEEECCSTTTC--------CCCCH
T ss_pred             hhhhhhceEEeeEEEcCCCEEEEEEEEccCCe----------------------EEEEEEEecccccccccchhhHHHHH
Confidence            33447899999999999999999999876655                      566766644321      12234556


Q ss_pred             HHHHhhhC----CCCCccchhhhhHHHhhhccCCCCcceeEEEEee-cCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHH
Q 024842           95 EIRVSSLF----SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPV-HLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQIC  169 (262)
Q Consensus        95 E~~~l~~l----~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~  169 (262)
                      |+.+++.+    +||||+++++++.          .....+++|++ +.+++|.+++.    ....+++..++.++.|++
T Consensus        84 e~~~l~~l~~~~~h~~i~~~~~~~~----------~~~~~~~v~e~~~~~~~L~~~l~----~~~~~~~~~~~~~~~qi~  149 (312)
T 2iwi_A           84 EVALLWKVGAGGGHPGVIRLLDWFE----------TQEGFMLVLERPLPAQDLFDYIT----EKGPLGEGPSRCFFGQVV  149 (312)
T ss_dssp             HHHHHHHHHSSCCCSSBCCEEEEC---------------CEEEEECCSSEEEHHHHHH----HHCSCCHHHHHHHHHHHH
T ss_pred             HHHHHHhhcccCCCCCeeeEEEEEe----------cCCeEEEEEEecCCCCCHHHHHH----hcCCCCHHHHHHHHHHHH
Confidence            88888887    8999999999873          35678899998 78899999886    344599999999999999


Q ss_pred             HHHHHHHcCCCCeeecCCCCCcEEEe-cCCCCCCceEEeeccceeeccccC---ccCcccCCcccchhhhhhhhhhhhhc
Q 024842          170 AGLKHMHSLEPPYAHNDVKPGNILIT-CRKGQPPLAILMDFGSARPAQSKF---ALGQRRYSCRNGLLSIVLHLSELLSC  245 (262)
Q Consensus       170 ~~l~~lH~~~~~ivH~dikp~Nill~-~~~~~~~~~kl~Dfg~a~~~~~~~---~~~~~~~~~~~d~~s~g~~~~e~~~~  245 (262)
                      .||.|||+.+  ++||||||+||+++ .++    .++|+|||++.......   ..++..|.+||.+.......    ..
T Consensus       150 ~~l~~lH~~~--i~H~dlkp~Nil~~~~~~----~~kl~dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~----~~  219 (312)
T 2iwi_A          150 AAIQHCHSRG--VVHRDIKDENILIDLRRG----CAKLIDFGSGALLHDEPYTDFDGTRVYSPPEWISRHQYHA----LP  219 (312)
T ss_dssp             HHHHHHHHHT--EECCCCSGGGEEEETTTT----EEEECCCSSCEECCSSCBCCCCSCTTTSCHHHHHHSCBCH----HH
T ss_pred             HHHHHHHHCC--eeecCCChhhEEEeCCCC----eEEEEEcchhhhcccCcccccCCcccccCceeeecCCCCC----cc
Confidence            9999999998  99999999999998 444    69999999998765432   34677788887553322111    13


Q ss_pred             CcccchheeheecccCC
Q 024842          246 GTVRVIQILMRELMFGR  262 (262)
Q Consensus       246 ~~v~~~g~~~~~l~~G~  262 (262)
                      .|+|++|+++++|++|+
T Consensus       220 ~Di~slG~il~~l~~g~  236 (312)
T 2iwi_A          220 ATVWSLGILLYDMVCGD  236 (312)
T ss_dssp             HHHHHHHHHHHHHHHSS
T ss_pred             chHHHHHHHHHHHHHCC
Confidence            68999999999988885

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}

Probab=99.97  E-value=8.1e-32  Score=225.52  Aligned_cols=200  Identities=24%  Similarity=0.323  Sum_probs=148.2

Q ss_pred             ceeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc--chHHHHHHHHHHH
Q 024842           20 DVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ--NNEQLEMVREEIR   97 (262)
Q Consensus        20 ~~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~--~~~~~~~~~~E~~   97 (262)
                      ..|-..++|.+.+.||+|+||.||+|++..+++                      .||+|++...  .....+.+.+|+.
T Consensus        18 ~~~~l~~~y~~~~~lg~G~~g~V~~~~~~~~~~----------------------~vaiK~~~~~~~~~~~~~~~~~E~~   75 (353)
T 3coi_A           18 TAWELPKTYVSPTHVGSGAYGSVCSAIDKRSGE----------------------KVAIKKLSRPFQSEIFAKRAYRELL   75 (353)
T ss_dssp             EEEEEETTEEEEEEEEECSSEEEEEEEETTTTE----------------------EEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred             cccccCceEEEeeeEecCCCeEEEEEEECCCCC----------------------EEEEEEecccccchHHHHHHHHHHH
Confidence            445556799999999999999999999887655                      6777776543  3444577889999


Q ss_pred             HhhhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHc
Q 024842           98 VSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHS  177 (262)
Q Consensus        98 ~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~  177 (262)
                      +++.++||||+++++++....    ........+++||++. ++|.+++.      ..+++..++.++.|++.||.|||+
T Consensus        76 ~l~~l~h~~iv~~~~~~~~~~----~~~~~~~~~lv~e~~~-~~l~~~~~------~~~~~~~~~~i~~qi~~al~~LH~  144 (353)
T 3coi_A           76 LLKHMQHENVIGLLDVFTPAS----SLRNFYDFYLVMPFMQ-TDLQKIMG------LKFSEEKIQYLVYQMLKGLKYIHS  144 (353)
T ss_dssp             HHHHCCCTTBCCCSEEECSCS----SGGGCCCCEEEEECCS-EEGGGTTT------SCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhcCCCCcccHhheEeccc----ccccceeEEEEecccc-CCHHHHhc------CCCCHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999873100    0000124599999887 58877653      239999999999999999999999


Q ss_pred             CCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC--ccCcccCCcccchhhhhhhhhhhhhcCcccchheeh
Q 024842          178 LEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF--ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILM  255 (262)
Q Consensus       178 ~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~--~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~  255 (262)
                      ++  ++||||||+||+++.++    .+||+|||++.......  ..++..|.+||.+.+..    ......|+||+|+++
T Consensus       145 ~~--ivH~dlkp~NIl~~~~~----~~kl~Dfg~~~~~~~~~~~~~~t~~y~aPE~~~~~~----~~~~~~Di~slG~il  214 (353)
T 3coi_A          145 AG--VVHRDLKPGNLAVNEDC----ELKILDFGLARHADAEMTGYVVTRWYRAPEVILSWM----HYNQTVDIWSVGCIM  214 (353)
T ss_dssp             TT--CCCSSCCGGGEEECTTC----CEEECSTTCTTC--------CCSBCCSCHHHHSCCS----CCCTTHHHHHHHHHH
T ss_pred             CC--cccCCCCHHHEeECCCC----cEEEeecccccCCCCCccccccCcCcCCHHHHhCcC----CCCchhhHHHHHHHH
Confidence            99  99999999999998776    69999999998654332  24566777777543311    111235777777777


Q ss_pred             eecccCC
Q 024842          256 RELMFGR  262 (262)
Q Consensus       256 ~~l~~G~  262 (262)
                      ++|++|+
T Consensus       215 ~el~~g~  221 (353)
T 3coi_A          215 AEMLTGK  221 (353)
T ss_dssp             HHHHHSS
T ss_pred             HHHHhCC
Confidence            7777764

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.97  E-value=1.5e-31  Score=241.60  Aligned_cols=193  Identities=15%  Similarity=0.259  Sum_probs=150.2

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc-chHHHHHHHHHHHHhhhCC
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ-NNEQLEMVREEIRVSSLFS  103 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~-~~~~~~~~~~E~~~l~~l~  103 (262)
                      .++|++.+.||+|+||.||+|.+....                     +..|++|++... .......+.+|+.+++.++
T Consensus        79 ~~~y~i~~~lg~G~~g~Vy~a~~~~~~---------------------~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~  137 (681)
T 2pzi_A           79 AGQYEVKGCIAHGGLGWIYLALDRNVN---------------------GRPVVLKGLVHSGDAEAQAMAMAERQFLAEVV  137 (681)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEEGGGT---------------------TEEEEEEESCSSCCHHHHHHHHHHHGGGGGCC
T ss_pred             CCceEEEEEEeeCCCeEEEEEEEcCCC---------------------CcEEEEEEeCccCCHHHHHHHHHHHHHHHhcC
Confidence            589999999999999999999987521                     236788876543 3344567889999999999


Q ss_pred             CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCee
Q 024842          104 HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYA  183 (262)
Q Consensus       104 h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~iv  183 (262)
                      ||||+++++++...     ........|++|||+.+++|.+++.    .  .+++..++.++.|++.||.|||+++  |+
T Consensus       138 hp~iv~~~~~~~~~-----~~~~~~~~~lv~E~~~g~~L~~~~~----~--~l~~~~~~~~~~qi~~aL~~lH~~g--ii  204 (681)
T 2pzi_A          138 HPSIVQIFNFVEHT-----DRHGDPVGYIVMEYVGGQSLKRSKG----Q--KLPVAEAIAYLLEILPALSYLHSIG--LV  204 (681)
T ss_dssp             CTTBCCEEEEEEEE-----CTTSCEEEEEEEECCCCEECC--------C--CCCHHHHHHHHHHHHHHHHHHHHTT--EE
T ss_pred             CCCcCeEeeeEeec-----CCCCCceeEEEEEeCCCCcHHHHHh----C--CCCHHHHHHHHHHHHHHHHHHHHCC--Ce
Confidence            99999999987420     0011122699999999999988764    2  5999999999999999999999999  99


Q ss_pred             ecCCCCCcEEEecCCCCCCceEEeeccceeecccc-CccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecccCC
Q 024842          184 HNDVKPGNILITCRKGQPPLAILMDFGSARPAQSK-FALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMFGR  262 (262)
Q Consensus       184 H~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~-~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~G~  262 (262)
                      ||||||+|||++.+     .+||+|||++...... ...+++.|.+||.+..- .     ....||||+|+++++|++|.
T Consensus       205 HrDlkp~NIll~~~-----~~kl~DFG~a~~~~~~~~~~gt~~y~aPE~~~~~-~-----~~~sDi~slG~~l~~l~~g~  273 (681)
T 2pzi_A          205 YNDLKPENIMLTEE-----QLKLIDLGAVSRINSFGYLYGTPGFQAPEIVRTG-P-----TVATDIYTVGRTLAALTLDL  273 (681)
T ss_dssp             CCCCSGGGEEECSS-----CEEECCCTTCEETTCCSCCCCCTTTSCTTHHHHC-S-----CHHHHHHHHHHHHHHHHSCC
T ss_pred             ecccChHHeEEeCC-----cEEEEecccchhcccCCccCCCccccCHHHHcCC-C-----CCceehhhhHHHHHHHHhCC
Confidence            99999999999764     4999999999887654 34588899999865321 1     22468888888888888763

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*

Probab=99.97  E-value=7.5e-32  Score=222.05  Aligned_cols=201  Identities=22%  Similarity=0.327  Sum_probs=152.5

Q ss_pred             CCCceeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc--chHHHHHHHH
Q 024842           17 GGGDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ--NNEQLEMVRE   94 (262)
Q Consensus        17 ~~~~~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~--~~~~~~~~~~   94 (262)
                      ......+..++|++.+.||+|+||.||+|.+..                       +..+|+|.+...  .....+.+.+
T Consensus        19 ~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~-----------------------~~~vavK~~~~~~~~~~~~~~~~~   75 (313)
T 3cek_A           19 YFQSMSVKGRIYSILKQIGSGGSSKVFQVLNEK-----------------------KQIYAIKYVNLEEADNQTLDSYRN   75 (313)
T ss_dssp             -CCEEEETTEEEEEEEEEECCSSEEEEEEECTT-----------------------CCEEEEEEEECSSCCHHHHHHHHH
T ss_pred             CeeeeeeccceEEEEEEecCCCCEEEEEEEcCC-----------------------CcEEEEEEeccccccccchHHHHH
Confidence            344577788999999999999999999998753                       236788876543  3445678899


Q ss_pred             HHHHhhhCC--CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHH
Q 024842           95 EIRVSSLFS--HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGL  172 (262)
Q Consensus        95 E~~~l~~l~--h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l  172 (262)
                      |+.+++.++  ||||+++++++.          .....+++|| +.+++|.+++.    ....+++..++.++.|++.||
T Consensus        76 E~~~l~~l~~~~~~iv~~~~~~~----------~~~~~~lv~e-~~~~~L~~~l~----~~~~~~~~~~~~i~~qi~~aL  140 (313)
T 3cek_A           76 EIAYLNKLQQHSDKIIRLYDYEI----------TDQYIYMVME-CGNIDLNSWLK----KKKSIDPWERKSYWKNMLEAV  140 (313)
T ss_dssp             HHHHHHHHGGGCTTBCCEEEEEE----------CSSEEEEEEC-CCSEEHHHHHH----HCSSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccccCCceEEEEEEee----------cCCEEEEEEe-cCCCcHHHHHH----hcCCCCHHHHHHHHHHHHHHH
Confidence            999999997  599999999873          3567899999 77889999886    445699999999999999999


Q ss_pred             HHHHcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-------ccCcccCCcccchhhhhhh------h
Q 024842          173 KHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-------ALGQRRYSCRNGLLSIVLH------L  239 (262)
Q Consensus       173 ~~lH~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-------~~~~~~~~~~~d~~s~g~~------~  239 (262)
                      .|||+.+  ++||||||+||+++. +    .+||+|||++.......       ..+++.|.+||.+......      .
T Consensus       141 ~~LH~~~--ivH~dlkp~NIl~~~-~----~~kL~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~  213 (313)
T 3cek_A          141 HTIHQHG--IVHSDLKPANFLIVD-G----MLKLIDFGIANQMQPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSK  213 (313)
T ss_dssp             HHHHHTT--CCCCCCCGGGEEEET-T----EEEECCCSSSCC--------------CCGGGCCHHHHTTCC---------
T ss_pred             HHHHHCC--ceecCCCcccEEEEC-C----eEEEeeccccccccCccccccccCCCCCCCcCCHHHHhhccccccccccc
Confidence            9999998  999999999999964 3    69999999998654322       2467777777765432110      0


Q ss_pred             hhhhhcCcccchheeheecccCC
Q 024842          240 SELLSCGTVRVIQILMRELMFGR  262 (262)
Q Consensus       240 ~e~~~~~~v~~~g~~~~~l~~G~  262 (262)
                      .......|+|++|+++++|++|+
T Consensus       214 ~~~~~~~Di~slG~il~el~~g~  236 (313)
T 3cek_A          214 SKISPKSDVWSLGCILYYMTYGK  236 (313)
T ss_dssp             -CCCHHHHHHHHHHHHHHHHHSS
T ss_pred             ccCCchHHHHHHHHHHHHHHhCC
Confidence            11222468888888888888875

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=99.97  E-value=1.7e-31  Score=239.76  Aligned_cols=195  Identities=18%  Similarity=0.246  Sum_probs=149.0

Q ss_pred             eecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc-chHHHHHHHHHHHHhh
Q 024842           22 WINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ-NNEQLEMVREEIRVSS  100 (262)
Q Consensus        22 ~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~-~~~~~~~~~~E~~~l~  100 (262)
                      .+..++|++.+.||+|+||.||+|.+..++.                   ....+++|+.... .....+.+.+|+.+++
T Consensus       386 ~i~~~~y~i~~~LG~G~fG~Vy~a~~~~~~~-------------------~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~  446 (656)
T 2j0j_A          386 EIQRERIELGRCIGEGQFGDVHQGIYMSPEN-------------------PAMAVAIKTCKNCTSDSVREKFLQEALTMR  446 (656)
T ss_dssp             BCCGGGEEEEEEEECCSSCCEEEEEECCSSS-------------------CCEEEEEEECSSTTCHHHHHHHHHHHHHHH
T ss_pred             ccccccEEEeeEEeeCCCEEEEEEEEecCCC-------------------ccEEEEEEEecccCCHHHHHHHHHHHHHHH
Confidence            3456789999999999999999999875433                   1235788876543 3444577899999999


Q ss_pred             hCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCC
Q 024842          101 LFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEP  180 (262)
Q Consensus       101 ~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~  180 (262)
                      .++||||+++++++.           .+..+++|||+.+++|.+++..   ....+++..++.++.|++.||.|||+++ 
T Consensus       447 ~l~HpnIv~l~~~~~-----------~~~~~lv~E~~~~g~L~~~l~~---~~~~l~~~~~~~i~~qi~~aL~~LH~~g-  511 (656)
T 2j0j_A          447 QFDHPHIVKLIGVIT-----------ENPVWIIMELCTLGELRSFLQV---RKFSLDLASLILYAYQLSTALAYLESKR-  511 (656)
T ss_dssp             HCCCTTBCCEEEEEC-----------SSSCEEEEECCTTCBHHHHHHH---TTTTCCHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred             hCCCCCCCeEEEEEe-----------cCceEEEEEcCCCCcHHHHHHh---ccCCCCHHHHHHHHHHHHHHHHHHHhCC-
Confidence            999999999998762           3458999999999999998863   3345899999999999999999999998 


Q ss_pred             CeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC------ccCcccCCcccchhhhhhhhhhhhhcCcccchhee
Q 024842          181 PYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF------ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQIL  254 (262)
Q Consensus       181 ~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~------~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~  254 (262)
                       |+||||||+|||++.++    .+||+|||++.......      ..++..|.+||.+....     .....|+||+|++
T Consensus       512 -ivHrDikp~NILl~~~~----~vkL~DFG~a~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~-----~~~~~DiwSlG~i  581 (656)
T 2j0j_A          512 -FVHRDIAARNVLVSSND----CVKLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINFRR-----FTSASDVWMFGVC  581 (656)
T ss_dssp             -CCCSCCSGGGEEEEETT----EEEECCCCCCCSCCC----------CCGGGCCHHHHHHCC-----CCHHHHHHHHHHH
T ss_pred             -ccccccchHhEEEeCCC----CEEEEecCCCeecCCCcceeccCCCCCcceeCHHHhcCCC-----CCchhhHHHHHHH
Confidence             99999999999999877    79999999998764432      22345677776432111     1112466666666


Q ss_pred             heeccc
Q 024842          255 MRELMF  260 (262)
Q Consensus       255 ~~~l~~  260 (262)
                      +|||++
T Consensus       582 l~ellt  587 (656)
T 2j0j_A          582 MWEILM  587 (656)
T ss_dssp             HHHHHT
T ss_pred             HHHHHH
Confidence            666654

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*

Probab=99.97  E-value=2.6e-31  Score=220.99  Aligned_cols=201  Identities=19%  Similarity=0.190  Sum_probs=136.4

Q ss_pred             ceeecCCceEEEE-EeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHH
Q 024842           20 DVWINENRYRILR-QLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRV   98 (262)
Q Consensus        20 ~~~~~~~~y~~~~-~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~   98 (262)
                      ..+...++|++.+ .||+|+||.||+|++..+++                      .||+|++.....    ...+....
T Consensus        22 ~~~~~~~~y~i~~~~lG~G~~g~V~~~~~~~~~~----------------------~vavK~~~~~~~----~~~e~~~~   75 (336)
T 3fhr_A           22 KKYAVTDDYQLSKQVLGLGVNGKVLECFHRRTGQ----------------------KCALKLLYDSPK----ARQEVDHH   75 (336)
T ss_dssp             BCSCGGGTEEEEEEEEEEETTEEEEEEEETTTCC----------------------EEEEEEEESSHH----HHHHHHHH
T ss_pred             CCccccceeEecceeeeeCCCeEEEEEEECCCCC----------------------EEEEEEecCcHH----HHHHHHHH
Confidence            3344468999965 59999999999999987655                      677777654321    11222334


Q ss_pred             hhhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcC
Q 024842           99 SSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSL  178 (262)
Q Consensus        99 l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~  178 (262)
                      ++.++||||+++++++..      ........+++|||+.+++|.+++...  ....+++..++.++.|++.||.|||++
T Consensus        76 ~~~~~h~~i~~~~~~~~~------~~~~~~~~~lv~e~~~gg~L~~~l~~~--~~~~l~~~~~~~i~~ql~~~l~~LH~~  147 (336)
T 3fhr_A           76 WQASGGPHIVCILDVYEN------MHHGKRCLLIIMECMEGGELFSRIQER--GDQAFTEREAAEIMRDIGTAIQFLHSH  147 (336)
T ss_dssp             HHHTTSTTBCCEEEEEEE------EETTEEEEEEEEECCTTEEHHHHHHTC---CCCCBHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHhcCCCChHHHHHHHhh------ccCCCceEEEEEeccCCCCHHHHHHhc--CCCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            677799999999998731      011245589999999999999988632  224699999999999999999999999


Q ss_pred             CCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC---ccCcccCCcccchhhhhhhhhhhhhcCcccchheeh
Q 024842          179 EPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF---ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILM  255 (262)
Q Consensus       179 ~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~---~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~  255 (262)
                      +  ++||||||+||+++.++. ...+||+|||++.......   ..+++.|.+||.+....+     ....|+|++|+++
T Consensus       148 ~--ivH~dlkp~NIll~~~~~-~~~~kl~Dfg~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~-----~~~~Di~slG~il  219 (336)
T 3fhr_A          148 N--IAHRDVKPENLLYTSKEK-DAVLKLTDFGFAKETTQNALQTPCYTPYYVAPEVLGPEKY-----DKSCDMWSLGVIM  219 (336)
T ss_dssp             T--EECSCCSGGGEEESCSST-TCCEEECCCTTCEEC----------------------CHH-----HHHHHHHHHHHHH
T ss_pred             C--eecCCCCHHHEEEEecCC-CceEEEeccccceeccccccccCCCCcCccChhhhCCCCC-----CchhhHHHHHHHH
Confidence            9  999999999999976442 2269999999998765432   346777888876532221     1235788888888


Q ss_pred             eecccCC
Q 024842          256 RELMFGR  262 (262)
Q Consensus       256 ~~l~~G~  262 (262)
                      |+|++|+
T Consensus       220 ~~l~~g~  226 (336)
T 3fhr_A          220 YILLCGF  226 (336)
T ss_dssp             HHHHHSS
T ss_pred             HHHHHCC
Confidence            8887774

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}

Probab=99.97  E-value=4.5e-32  Score=227.49  Aligned_cols=204  Identities=20%  Similarity=0.249  Sum_probs=138.8

Q ss_pred             eecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhh
Q 024842           22 WINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSL  101 (262)
Q Consensus        22 ~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~  101 (262)
                      ....++|++.+.||+|+||.||+|++..+++                      .||+|++..... .......++..++.
T Consensus        19 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~----------------------~vavK~~~~~~~-~~~~~~~~~~~l~~   75 (360)
T 3e3p_A           19 RKEMDRFQVERMAGQGTFGTVQLGKEKSTGM----------------------SVAIKKVIQDPR-FRNRELQIMQDLAV   75 (360)
T ss_dssp             HHHHTTEEEC----------CEEEEETTTCC----------------------EEEEEEEECCTT-CCCHHHHHHHHHHH
T ss_pred             hhhccceEEEEEEecCCCeEEEEEEECCCCC----------------------EEEEEEEecCcc-ccHHHHHHHHHHHh
Confidence            3445789999999999999999999987655                      566665543321 12345567778888


Q ss_pred             CCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHH--cCC
Q 024842          102 FSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMH--SLE  179 (262)
Q Consensus       102 l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH--~~~  179 (262)
                      ++||||+++++++...   ..........+++|||+.+ +|.+.+.........+++..++.++.|++.||.|||  +.+
T Consensus        76 l~h~niv~~~~~~~~~---~~~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~~~  151 (360)
T 3e3p_A           76 LHHPNIVQLQSYFYTL---GERDRRDIYLNVVMEYVPD-TLHRCCRNYYRRQVAPPPILIKVFLFQLIRSIGCLHLPSVN  151 (360)
T ss_dssp             HCCTTBCCEEEEEEEE---CSSCTTCEEEEEEEECCSC-BHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHTSTTTC
T ss_pred             cCCCCcccHHHhhhcc---ccccccceeEEEEeecccc-cHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            8999999999987421   1111223347899998876 555555444445667999999999999999999999  888


Q ss_pred             CCeeecCCCCCcEEEec-CCCCCCceEEeeccceeeccccC----ccCcccCCcccchhhhhhhhhhhhhcCcccchhee
Q 024842          180 PPYAHNDVKPGNILITC-RKGQPPLAILMDFGSARPAQSKF----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQIL  254 (262)
Q Consensus       180 ~~ivH~dikp~Nill~~-~~~~~~~~kl~Dfg~a~~~~~~~----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~  254 (262)
                        |+||||||+|||++. ++    .+||+|||++.......    ..++..|.+||.+..-..    .....||||+|++
T Consensus       152 --ivH~Dlkp~NIll~~~~~----~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~----~~~~~Di~slG~i  221 (360)
T 3e3p_A          152 --VCHRDIKPHNVLVNEADG----TLKLCDFGSAKKLSPSEPNVAYICSRYYRAPELIFGNQH----YTTAVDIWSVGCI  221 (360)
T ss_dssp             --CBCSCCCGGGEEEETTTT----EEEECCCTTCBCCCTTSCCCSTTSCGGGCCHHHHTTCSS----CCTHHHHHHHHHH
T ss_pred             --eecCcCCHHHEEEeCCCC----cEEEeeCCCceecCCCCCcccccCCcceeCHHHHcCCCC----CCcHHHHHHHHHH
Confidence              999999999999986 44    79999999998765432    245667777776532211    1123578888888


Q ss_pred             heecccCC
Q 024842          255 MRELMFGR  262 (262)
Q Consensus       255 ~~~l~~G~  262 (262)
                      +|+|++|+
T Consensus       222 l~ell~g~  229 (360)
T 3e3p_A          222 FAEMMLGE  229 (360)
T ss_dssp             HHHHHHSS
T ss_pred             HHHHHhCC
Confidence            88888874

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A

Probab=99.97  E-value=9.9e-32  Score=226.38  Aligned_cols=201  Identities=27%  Similarity=0.330  Sum_probs=153.1

Q ss_pred             ecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhC
Q 024842           23 INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLF  102 (262)
Q Consensus        23 ~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l  102 (262)
                      +..++|++.+.||+|+||.||+|++..+++                      .||+|.+... ....+.+.+|+.+++.+
T Consensus        16 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~----------------------~vaiK~~~~~-~~~~~~~~~e~~~l~~l   72 (373)
T 1q8y_A           16 YKDARYILVRKLGWGHFSTVWLAKDMVNNT----------------------HVAMKIVRGD-KVYTEAAEDEIKLLQRV   72 (373)
T ss_dssp             ETTTTEEEEEEEEECSSEEEEEEEETTTTE----------------------EEEEEEECSC-HHHHHHHHHHHHHHHHH
T ss_pred             ccCCeEEEEEeeeecCCeEEEEEEecCCCc----------------------EEEEEEecCC-ccchhhhhHHHHHHHHh
Confidence            356899999999999999999999876655                      6777776533 23346678888888877


Q ss_pred             C-----------CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHH
Q 024842          103 S-----------HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAG  171 (262)
Q Consensus       103 ~-----------h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~  171 (262)
                      +           ||||+++++++..      .+......+++||++ +++|.+++....  ...+++..++.++.|++.|
T Consensus        73 ~~~~~~~~~~~~~~~i~~~~~~~~~------~~~~~~~~~lv~e~~-~~~L~~~~~~~~--~~~~~~~~~~~i~~qi~~a  143 (373)
T 1q8y_A           73 NDADNTKEDSMGANHILKLLDHFNH------KGPNGVHVVMVFEVL-GENLLALIKKYE--HRGIPLIYVKQISKQLLLG  143 (373)
T ss_dssp             HHTCCSHHHHHHHTTBCCCCEEEEE------EETTEEEEEEEECCC-CEEHHHHHHHTT--TSCCCHHHHHHHHHHHHHH
T ss_pred             hcccccchhccccchHHHHHHHhhc------cCCCCceEEEEEecC-CCCHHHHHHHhh--ccCCcHHHHHHHHHHHHHH
Confidence            6           8899999998732      111233688999987 899999886432  3448999999999999999


Q ss_pred             HHHHHcC-CCCeeecCCCCCcEEEecCC--CCCCceEEeeccceeeccccC--ccCcccCCcccchhhhhhhhhhhhhcC
Q 024842          172 LKHMHSL-EPPYAHNDVKPGNILITCRK--GQPPLAILMDFGSARPAQSKF--ALGQRRYSCRNGLLSIVLHLSELLSCG  246 (262)
Q Consensus       172 l~~lH~~-~~~ivH~dikp~Nill~~~~--~~~~~~kl~Dfg~a~~~~~~~--~~~~~~~~~~~d~~s~g~~~~e~~~~~  246 (262)
                      |.|||++ +  |+||||||+|||++.++  .....+||+|||++.......  ..++..|.+||.+....     .....
T Consensus       144 L~~lH~~~~--ivH~Dikp~NIll~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~t~~y~aPE~~~~~~-----~~~~~  216 (373)
T 1q8y_A          144 LDYMHRRCG--IIHTDIKPENVLMEIVDSPENLIQIKIADLGNACWYDEHYTNSIQTREYRSPEVLLGAP-----WGCGA  216 (373)
T ss_dssp             HHHHHHTTC--EECSCCSGGGEEEEEEETTTTEEEEEECCCTTCEETTBCCCSCCSCGGGCCHHHHHTCC-----CCTHH
T ss_pred             HHHHHhcCC--EEecCCChHHeEEeccCCCcCcceEEEcccccccccCCCCCCCCCCccccCcHHHhCCC-----CCchH
Confidence            9999997 8  99999999999996543  223369999999998765432  35677788887654322     11235


Q ss_pred             cccchheeheecccCC
Q 024842          247 TVRVIQILMRELMFGR  262 (262)
Q Consensus       247 ~v~~~g~~~~~l~~G~  262 (262)
                      |+||+|+++|+|++|+
T Consensus       217 Di~slG~il~el~~g~  232 (373)
T 1q8y_A          217 DIWSTACLIFELITGD  232 (373)
T ss_dssp             HHHHHHHHHHHHHHSS
T ss_pred             hHHHHHHHHHHHHhCC
Confidence            8888888888888874

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*

Probab=99.97  E-value=1.7e-31  Score=221.82  Aligned_cols=196  Identities=24%  Similarity=0.327  Sum_probs=149.4

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCCC
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSH  104 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~h  104 (262)
                      .++|++.+.||+|+||.||+|.+...                     .+..||+|++... ....+.+.+|+.+++.++|
T Consensus        13 ~~~y~~~~~lg~G~~g~V~~~~~~~~---------------------~~~~vavK~~~~~-~~~~~~~~~e~~~l~~l~~   70 (339)
T 1z57_A           13 SARYEIVDTLGEGAFGKVVECIDHKA---------------------GGRHVAVKIVKNV-DRYCEAARSEIQVLEHLNT   70 (339)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTT---------------------TTEEEEEEEECSS-HHHHHHHHHHHHHHHHHHH
T ss_pred             cCceEEEEEEecCCCeEEEEEEecCC---------------------CCcEEEEEEEecC-CchhHHHHHHHHHHHHhhh
Confidence            77999999999999999999998432                     1236788877543 3345677889999888866


Q ss_pred             CC------ccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcC
Q 024842          105 RN------LLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSL  178 (262)
Q Consensus       105 ~~------i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~  178 (262)
                      ++      ++++++++          ...+..+++||++ +++|.+++...  ...++++..++.++.|++.||.|||++
T Consensus        71 ~~~~~~~~i~~~~~~~----------~~~~~~~lv~e~~-~~~l~~~l~~~--~~~~~~~~~~~~~~~qi~~~l~~lH~~  137 (339)
T 1z57_A           71 TDPNSTFRCVQMLEWF----------EHHGHICIVFELL-GLSTYDFIKEN--GFLPFRLDHIRKMAYQICKSVNFLHSN  137 (339)
T ss_dssp             HCTTCTTCBCCEEEEE----------EETTEEEEEEECC-CCBHHHHHHHT--TTCCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cCCCCceeeEeeeccc----------ccCCcEEEEEcCC-CCCHHHHHHhc--CCCCCcHHHHHHHHHHHHHHHHHHHHC
Confidence            54      88888876          3356899999998 88999888632  223589999999999999999999999


Q ss_pred             CCCeeecCCCCCcEEEecCCCC---------------CCceEEeeccceeecccc--CccCcccCCcccchhhhhhhhhh
Q 024842          179 EPPYAHNDVKPGNILITCRKGQ---------------PPLAILMDFGSARPAQSK--FALGQRRYSCRNGLLSIVLHLSE  241 (262)
Q Consensus       179 ~~~ivH~dikp~Nill~~~~~~---------------~~~~kl~Dfg~a~~~~~~--~~~~~~~~~~~~d~~s~g~~~~e  241 (262)
                      +  |+||||||+||+++.++..               ...+||+|||++......  ...++..|.+||.+....+    
T Consensus       138 ~--ivH~Dlkp~Nil~~~~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~----  211 (339)
T 1z57_A          138 K--LTHTDLKPENILFVQSDYTEAYNPKIKRDERTLINPDIKVVDFGSATYDDEHHSTLVSTRHYRAPEVILALGW----  211 (339)
T ss_dssp             T--EECCCCCGGGEEESCCCEEEEEC----CEEEEESCCCEEECCCSSCEETTSCCCSSCSCGGGCCHHHHTTSCC----
T ss_pred             C--CcCCCCCHHHEEEeccccccccCCccccccccccCCCceEeeCcccccCccccccccCCccccChHHhhCCCC----
Confidence            9  9999999999999763210               226999999999876543  2356777888876543321    


Q ss_pred             hhhcCcccchheeheecccCC
Q 024842          242 LLSCGTVRVIQILMRELMFGR  262 (262)
Q Consensus       242 ~~~~~~v~~~g~~~~~l~~G~  262 (262)
                       ....|+|++|+++|+|++|+
T Consensus       212 -~~~~Di~slG~il~el~~g~  231 (339)
T 1z57_A          212 -SQPCDVWSIGCILIEYYLGF  231 (339)
T ss_dssp             -CTHHHHHHHHHHHHHHHHSS
T ss_pred             -CcchhhHHHHHHHHHHHhCC
Confidence             22357888888888888774

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...

Probab=99.97  E-value=2.8e-32  Score=225.37  Aligned_cols=193  Identities=24%  Similarity=0.290  Sum_probs=150.4

Q ss_pred             cCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccch------HHHHHHHHHHH
Q 024842           24 NENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNN------EQLEMVREEIR   97 (262)
Q Consensus        24 ~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~------~~~~~~~~E~~   97 (262)
                      ..++|++.+.||+|+||.||+|++..+++                      .||+|.+.....      ...+.+.+|+.
T Consensus        41 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~----------------------~vavK~~~~~~~~~~~~~~~~~~~~~E~~   98 (320)
T 3a99_A           41 LESQYQVGPLLGSGGFGSVYSGIRVSDNL----------------------PVAIKHVEKDRISDWGELPNGTRVPMEVV   98 (320)
T ss_dssp             CTTTEEEEEECSSSSSCEEEEEEETTTTE----------------------EEEEEEEEGGGCCCEEECTTCCEEEHHHH
T ss_pred             ccCceEEEEEEeeCCCeEEEEEEECCCCc----------------------EEEEEEEecccchhhhhhhhhhHHHHHHH
Confidence            47899999999999999999999887665                      566665543211      11234567888


Q ss_pred             HhhhCC--CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCC-CchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHH
Q 024842           98 VSSLFS--HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLD-GTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKH  174 (262)
Q Consensus        98 ~l~~l~--h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~  174 (262)
                      +++.++  |+||+++++++          ......+++|+++.+ ++|.+++.    ....+++..++.++.|++.||.|
T Consensus        99 ~l~~l~~~~~~i~~~~~~~----------~~~~~~~lv~e~~~~~~~L~~~l~----~~~~l~~~~~~~i~~qi~~~L~~  164 (320)
T 3a99_A           99 LLKKVSSGFSGVIRLLDWF----------ERPDSFVLILERPEPVQDLFDFIT----ERGALQEELARSFFWQVLEAVRH  164 (320)
T ss_dssp             HHHHHCSSSCSBCCEEEEE----------ECSSEEEEEEECCSSEEEHHHHHH----HHCSCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhccCCCCceEEEEEE----------ecCCcEEEEEEcCCCCccHHHHHh----ccCCCCHHHHHHHHHHHHHHHHH
Confidence            998886  59999999987          335678999999876 89999886    34569999999999999999999


Q ss_pred             HHcCCCCeeecCCCCCcEEEe-cCCCCCCceEEeeccceeeccccC---ccCcccCCcccchhhhhhhhhhhhhcCcccc
Q 024842          175 MHSLEPPYAHNDVKPGNILIT-CRKGQPPLAILMDFGSARPAQSKF---ALGQRRYSCRNGLLSIVLHLSELLSCGTVRV  250 (262)
Q Consensus       175 lH~~~~~ivH~dikp~Nill~-~~~~~~~~~kl~Dfg~a~~~~~~~---~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~  250 (262)
                      ||+.+  |+||||||+||+++ .++    .+||+|||++.......   ..++..|.+||.+......    ....|+|+
T Consensus       165 LH~~~--ivH~Dlkp~NIll~~~~~----~~kL~Dfg~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~----~~~~Di~s  234 (320)
T 3a99_A          165 CHNCG--VLHRDIKDENILIDLNRG----ELKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRYH----GRSAAVWS  234 (320)
T ss_dssp             HHHTT--EECCCCSGGGEEEETTTT----EEEECCCTTCEECCSSCBCCCCSCGGGSCHHHHHHSCBC----HHHHHHHH
T ss_pred             HHHCC--cEeCCCCHHHEEEeCCCC----CEEEeeCccccccccccccCCCCCccCCChHHhccCCCC----CccchHHh
Confidence            99999  99999999999998 444    69999999998765432   3467778888765332211    12358888


Q ss_pred             hheeheecccCC
Q 024842          251 IQILMRELMFGR  262 (262)
Q Consensus       251 ~g~~~~~l~~G~  262 (262)
                      +|+++|+|++|+
T Consensus       235 lG~il~el~~g~  246 (320)
T 3a99_A          235 LGILLYDMVCGD  246 (320)
T ss_dssp             HHHHHHHHHHSS
T ss_pred             HHHHHHHHHHCC
Confidence            888888888875

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}

Probab=99.97  E-value=8.3e-32  Score=233.45  Aligned_cols=191  Identities=20%  Similarity=0.287  Sum_probs=145.4

Q ss_pred             cCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCC
Q 024842           24 NENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFS  103 (262)
Q Consensus        24 ~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~  103 (262)
                      ..++|++.+.||+|+||.||+|++..+++                      .||+|........  +.+..|+.+++.++
T Consensus         5 i~~~y~i~~~LG~G~fG~Vy~a~~~~~~~----------------------~vAvK~~~~~~~~--~~~~~E~~il~~L~   60 (483)
T 3sv0_A            5 VGNKFRLGRKIGSGSFGEIYLGTNIQTNE----------------------EVAIKLENVKTKH--PQLLYESKIYRILQ   60 (483)
T ss_dssp             ETTTEECCCCCEECSSCEEEEEEETTTCC----------------------EEEEEEEETTCSS--CCHHHHHHHHHHTT
T ss_pred             cCCcEEEEEEEeeCCCEEEEEEEECCCCc----------------------EEEEEEecccccc--HHHHHHHHHHHHhc
Confidence            36899999999999999999999877655                      5677754433221  34678999999998


Q ss_pred             CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCee
Q 024842          104 HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYA  183 (262)
Q Consensus       104 h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~iv  183 (262)
                      |++.+..+..+.         ......+++|||+ +++|.+++...   ...+++..++.++.||+.||.|||+++  |+
T Consensus        61 ~~~~i~~i~~~~---------~~~~~~~lvme~~-g~sL~~ll~~~---~~~l~~~~~~~i~~qi~~aL~yLH~~g--Iv  125 (483)
T 3sv0_A           61 GGTGIPNVRWFG---------VEGDYNVLVMDLL-GPSLEDLFNFC---SRKLSLKTVLMLADQMINRVEFVHSKS--FL  125 (483)
T ss_dssp             TSTTCCCEEEEE---------EETTEEEEEEECC-CCBHHHHHHHT---TTCCCHHHHHHHHHHHHHHHHHHHHTT--EE
T ss_pred             CCCCCCeEEEEE---------eeCCEEEEEEECC-CCCHHHHHHhh---cCCCCHHHHHHHHHHHHHHHHHHHHCC--Ee
Confidence            866665554442         3356789999998 99999988632   345999999999999999999999999  99


Q ss_pred             ecCCCCCcEEEe---cCCCCCCceEEeeccceeecccc------------CccCcccCCcccchhhhhhhhhhhhhcCcc
Q 024842          184 HNDVKPGNILIT---CRKGQPPLAILMDFGSARPAQSK------------FALGQRRYSCRNGLLSIVLHLSELLSCGTV  248 (262)
Q Consensus       184 H~dikp~Nill~---~~~~~~~~~kl~Dfg~a~~~~~~------------~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v  248 (262)
                      ||||||+|||++   .++    .+||+|||++......            ...++..|.+||.+....+     ....||
T Consensus       126 HrDIKP~NILl~~~~~~~----~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~-----s~~sDv  196 (483)
T 3sv0_A          126 HRDIKPDNFLMGLGRRAN----QVYIIDFGLAKKYRDTSTHQHIPYRENKNLTGTARYASVNTHLGIEQ-----SRRDDL  196 (483)
T ss_dssp             CCCCCGGGEEECCGGGTT----CEEECCCTTCEECBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCC-----CHHHHH
T ss_pred             ecccCcceEEEecCCCCC----eEEEEeCCcceeccCCccccccccccccccCCCccccCHHHhcCCCC-----ChHHHH
Confidence            999999999994   333    6999999999876543            2346677777775543321     123577


Q ss_pred             cchheeheecccCC
Q 024842          249 RVIQILMRELMFGR  262 (262)
Q Consensus       249 ~~~g~~~~~l~~G~  262 (262)
                      |++|+++|+|++|+
T Consensus       197 wSlGvil~elltG~  210 (483)
T 3sv0_A          197 ESLGYVLMYFLRGS  210 (483)
T ss_dssp             HHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHhCC
Confidence            77777777777774

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}

Probab=99.97  E-value=7.5e-32  Score=222.30  Aligned_cols=202  Identities=17%  Similarity=0.142  Sum_probs=135.5

Q ss_pred             CceeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccch--HHHHHHHHHH
Q 024842           19 GDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNN--EQLEMVREEI   96 (262)
Q Consensus        19 ~~~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~--~~~~~~~~E~   96 (262)
                      .......++|++.+.||+|+||.||+|++..+++                      .|++|.+.....  ...+.+.++.
T Consensus        18 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~----------------------~vavK~~~~~~~~~~~~~~~~~~~   75 (318)
T 2dyl_A           18 QRYQAEINDLENLGEMGSGTCGQVWKMRFRKTGH----------------------VIAVKQMRRSGNKEENKRILMDLD   75 (318)
T ss_dssp             SEEECCGGGEEEEEEC------CEEEEEETTTCC----------------------EEEEEEEETTSCHHHHHHHHHHHH
T ss_pred             hhhhhhhccccccceeeecCCeeEEEEEEecCCe----------------------EEEEEEecccccchHHHHHHHHHH
Confidence            3444556789999999999999999999876654                      678887654422  2233444555


Q ss_pred             HHhhhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHH
Q 024842           97 RVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMH  176 (262)
Q Consensus        97 ~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH  176 (262)
                      .+++.++||||+++++++.          .....+++||++ ++.+..+...   ....+++..++.++.|++.||.|||
T Consensus        76 ~~~~~~~h~~i~~~~~~~~----------~~~~~~lv~e~~-~~~~~~l~~~---~~~~~~~~~~~~~~~~i~~~l~~lH  141 (318)
T 2dyl_A           76 VVLKSHDCPYIVQCFGTFI----------TNTDVFIAMELM-GTCAEKLKKR---MQGPIPERILGKMTVAIVKALYYLK  141 (318)
T ss_dssp             HHHHTTTCTTBCCEEEEEE----------CSSEEEEEECCC-SEEHHHHHHH---HTSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCCCceeeEEEEEe----------cCCcEEEEEecc-CCcHHHHHHH---hccCCCHHHHHHHHHHHHHHHHHHH
Confidence            6688889999999999873          356789999988 4455444431   2456999999999999999999999


Q ss_pred             cC-CCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC----ccCcccCCcccchhhhhhhhhhhhhcCcccch
Q 024842          177 SL-EPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVI  251 (262)
Q Consensus       177 ~~-~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~  251 (262)
                      +. +  ++|+||||+||+++.++    .+||+|||++.......    ..++..|.+||.+..............|+|++
T Consensus       142 ~~~~--i~H~dlkp~Nil~~~~~----~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~sl  215 (318)
T 2dyl_A          142 EKHG--VIHRDVKPSNILLDERG----QIKLCDFGISGRLVDDKAKDRSAGCAAYMAPERIDPPDPTKPDYDIRADVWSL  215 (318)
T ss_dssp             HHHC--CCCCCCCGGGEEECTTS----CEEECCCTTC--------------CCTTCCHHHHC--------CCTHHHHHHH
T ss_pred             hhCC--EEeCCCCHHHEEECCCC----CEEEEECCCchhccCCccccccCCCccccChhhcccccccccCCccccchhhH
Confidence            85 8  99999999999998776    69999999997654322    24666777777653211111112223578888


Q ss_pred             heeheecccCC
Q 024842          252 QILMRELMFGR  262 (262)
Q Consensus       252 g~~~~~l~~G~  262 (262)
                      |+++++|++|+
T Consensus       216 G~il~~l~~g~  226 (318)
T 2dyl_A          216 GISLVELATGQ  226 (318)
T ss_dssp             HHHHHHHHHSS
T ss_pred             HHHHHHHHhCC
Confidence            88888887774

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*

Probab=99.97  E-value=1.6e-31  Score=221.35  Aligned_cols=204  Identities=15%  Similarity=0.193  Sum_probs=138.7

Q ss_pred             CceeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc-hHHHHHHHHHHH
Q 024842           19 GDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN-NEQLEMVREEIR   97 (262)
Q Consensus        19 ~~~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~-~~~~~~~~~E~~   97 (262)
                      ....+..++|++.+.||+|+||.||+|.+..+++                      .||+|++.... ......+..|..
T Consensus        15 ~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~----------------------~vaiK~~~~~~~~~~~~~~~~e~~   72 (327)
T 3aln_A           15 QHWDFTAEDLKDLGEIGRGAYGSVNKMVHKPSGQ----------------------IMAVKRIRSTVDEKEQKQLLMDLD   72 (327)
T ss_dssp             EEECCCSCSEEC-CEEEECSSEEEEEEEETTTTE----------------------EEEEEEEECCCCHHHHHHHHHHHH
T ss_pred             HhcccCHHHhhehheeccCCCEEEEEEEEcCCCC----------------------EEEEEEeecccCchHHHHHHHHHH
Confidence            3444667899999999999999999999876654                      67888775542 233344555555


Q ss_pred             -HhhhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhh-cCCCCCHHHHHHHHHHHHHHHHHH
Q 024842           98 -VSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQT-KKEFFSTSDVLQIFYQICAGLKHM  175 (262)
Q Consensus        98 -~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~-~~~~~~~~~~~~i~~ql~~~l~~l  175 (262)
                       +++.++||||+++++++.          ..+..+++||++.+ +|.+++..... ....+++..++.++.|++.||.||
T Consensus        73 ~~~~~~~h~niv~~~~~~~----------~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~l  141 (327)
T 3aln_A           73 VVMRSSDCPYIVQFYGALF----------REGDCWICMELMST-SFDKFYKYVYSVLDDVIPEEILGKITLATVKALNHL  141 (327)
T ss_dssp             HHHSSCCCTTBCCEEEEEE----------CSSEEEEEECCCSE-EHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCCCcEeeeeeEEE----------eCCceEEEEeecCC-ChHHHHHHHHhhhcccCcHHHHHHHHHHHHHHHHHH
Confidence             678889999999999873          35678999998875 88777764332 246699999999999999999999


Q ss_pred             HcC-CCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC----ccCcccCCcccchhhhhhhhhhhhhcCcccc
Q 024842          176 HSL-EPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRV  250 (262)
Q Consensus       176 H~~-~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~  250 (262)
                      |+. +  ++||||||+||+++.++    .+||+|||++.......    ..++..|.+||.+.... .........|+|+
T Consensus       142 H~~~~--ivH~dlkp~NIll~~~~----~~kl~Dfg~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~~~~~~Di~s  214 (327)
T 3aln_A          142 KENLK--IIHRDIKPSNILLDRSG----NIKLCDFGISGQLVDSIAKTRDAGCRPYMAPERIDPSA-SRQGYDVRSDVWS  214 (327)
T ss_dssp             HHHHS--CCCSCCCGGGEEEETTT----EEEECCCSSSCC-------------------------------CCSHHHHHH
T ss_pred             hccCC--EeECCCCHHHEEEcCCC----CEEEccCCCceecccccccccCCCCccccCceeecccc-CcCCCCchhhHHH
Confidence            998 8  99999999999998776    79999999997654322    24566677776542110 0001112356777


Q ss_pred             hheeheecccCC
Q 024842          251 IQILMRELMFGR  262 (262)
Q Consensus       251 ~g~~~~~l~~G~  262 (262)
                      +|+++++|++|+
T Consensus       215 lG~il~~l~~g~  226 (327)
T 3aln_A          215 LGITLYELATGR  226 (327)
T ss_dssp             HHHHHHHHHHSC
T ss_pred             HHHHHHHHHHCC
Confidence            777777777664

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*

Probab=99.97  E-value=1.9e-31  Score=222.06  Aligned_cols=193  Identities=19%  Similarity=0.244  Sum_probs=149.2

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhh--C
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSL--F  102 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~--l  102 (262)
                      .++|++.+.||+|+||.||+|++.  +                      +.||+|.+....   ...+..|.++++.  +
T Consensus        41 ~~~y~~~~~lg~G~~g~Vy~~~~~--~----------------------~~vavK~~~~~~---~~~~~~e~~~~~~~~l   93 (342)
T 1b6c_B           41 ARTIVLQESIGKGRFGEVWRGKWR--G----------------------EEVAVKIFSSRE---ERSWFREAEIYQTVML   93 (342)
T ss_dssp             HHHCEEEEEEEEETTEEEEEEEET--T----------------------EEEEEEEECGGG---HHHHHHHHHHHHHSCC
T ss_pred             cccEEEEeeecCCCCcEEEEEEEc--C----------------------ccEEEEEeCchh---HHHHHHHHHHHHHhhc
Confidence            378999999999999999999873  2                      367888775432   2456678888776  7


Q ss_pred             CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHH------
Q 024842          103 SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMH------  176 (262)
Q Consensus       103 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH------  176 (262)
                      +||||+++++++..      ........+++||++.+++|.+++..     ..+++..++.++.|++.||.|||      
T Consensus        94 ~h~ni~~~~~~~~~------~~~~~~~~~lv~e~~~~g~L~~~l~~-----~~~~~~~~~~i~~~i~~~l~~lH~~~~~~  162 (342)
T 1b6c_B           94 RHENILGFIAADNK------DNGTWTQLWLVSDYHEHGSLFDYLNR-----YTVTVEGMIKLALSTASGLAHLHMEIVGT  162 (342)
T ss_dssp             CCTTBCCEEEEEEC------CCSSCCCEEEEECCCTTCBHHHHHHH-----CCBCHHHHHHHHHHHHHHHHHHHCCBCST
T ss_pred             CCCcEEEEEeeecc------cCCccceeEEEEeecCCCcHHHHHhc-----cCccHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            89999999988741      11112378999999999999998852     34899999999999999999999      


Q ss_pred             --cCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC---------ccCcccCCcccchhhhhhh-hhhhhh
Q 024842          177 --SLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF---------ALGQRRYSCRNGLLSIVLH-LSELLS  244 (262)
Q Consensus       177 --~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~---------~~~~~~~~~~~d~~s~g~~-~~e~~~  244 (262)
                        +.+  ++||||||+||+++.++    .+||+|||++.......         ..++..|.+||.+...... ......
T Consensus       163 ~~~~~--ivH~Dlkp~NIll~~~~----~~kL~Dfg~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~  236 (342)
T 1b6c_B          163 QGKPA--IAHRDLKSKNILVKKNG----TCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFK  236 (342)
T ss_dssp             TCBCE--EECSCCSGGGEEECTTS----CEEECCCTTCEEEETTTTEEEECCCSCCCCGGGCCHHHHTSCCCTTCHHHHH
T ss_pred             cccCC--eeeCCCCHHHEEECCCC----CEEEEECCCceeccccccccccccccCCcCcccCCHhhhcccccccccccCC
Confidence              778  99999999999998776    69999999998765432         2567788888765432111 112223


Q ss_pred             cCcccchheeheecccC
Q 024842          245 CGTVRVIQILMRELMFG  261 (262)
Q Consensus       245 ~~~v~~~g~~~~~l~~G  261 (262)
                      ..|+|++|+++|+|++|
T Consensus       237 ~~Di~slG~il~el~tg  253 (342)
T 1b6c_B          237 RADIYAMGLVFWEIARR  253 (342)
T ss_dssp             HHHHHHHHHHHHHHHTT
T ss_pred             cccHHHHHHHHHHHHhc
Confidence            46899999999999887

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*

Probab=99.97  E-value=8.6e-31  Score=218.99  Aligned_cols=196  Identities=22%  Similarity=0.313  Sum_probs=147.6

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCCC
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSH  104 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~h  104 (262)
                      .++|++.+.||+|+||.||+|.+..+++                     ..||+|.+... ....+.+.+|+.+++.++|
T Consensus        18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~---------------------~~vavK~~~~~-~~~~~~~~~E~~~l~~l~~   75 (355)
T 2eu9_A           18 QERYEIVGNLGEGTFGKVVECLDHARGK---------------------SQVALKIIRNV-GKYREAARLEINVLKKIKE   75 (355)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTTT---------------------EEEEEEEECSC-HHHHHHHHHHHHHHHHHHH
T ss_pred             cccEEEEEEeeccCCeEEEEEEecCCCc---------------------eEEEEEEEccc-ccchhHHHHHHHHHHHHhh
Confidence            6899999999999999999999876542                     36788877543 3345677889999988876


Q ss_pred             CC------ccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcC
Q 024842          105 RN------LLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSL  178 (262)
Q Consensus       105 ~~------i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~  178 (262)
                      ++      ++.+.+++          ...+..+++||++ ++++.+.+...  ....+++..++.++.|++.||.|||++
T Consensus        76 ~~~~~~~~~~~~~~~~----------~~~~~~~lv~e~~-~~~l~~~l~~~--~~~~~~~~~~~~i~~qi~~~L~~lH~~  142 (355)
T 2eu9_A           76 KDKENKFLCVLMSDWF----------NFHGHMCIAFELL-GKNTFEFLKEN--NFQPYPLPHVRHMAYQLCHALRFLHEN  142 (355)
T ss_dssp             HCTTSCSCBCCEEEEE----------EETTEEEEEEECC-CCBHHHHHHHT--TTCCCCHHHHHHHHHHHHHHHHHHHTT
T ss_pred             cCCCCceeEEEeeeee----------eeCCeEEEEEecc-CCChHHHHHhc--cCCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            65      77777665          3356789999998 66776666422  224599999999999999999999999


Q ss_pred             CCCeeecCCCCCcEEEecCC---------------CCCCceEEeeccceeeccccC--ccCcccCCcccchhhhhhhhhh
Q 024842          179 EPPYAHNDVKPGNILITCRK---------------GQPPLAILMDFGSARPAQSKF--ALGQRRYSCRNGLLSIVLHLSE  241 (262)
Q Consensus       179 ~~~ivH~dikp~Nill~~~~---------------~~~~~~kl~Dfg~a~~~~~~~--~~~~~~~~~~~d~~s~g~~~~e  241 (262)
                      +  |+||||||+|||++..+               .....+||+|||++.......  ..++..|.+||.+....+    
T Consensus       143 ~--ivH~Dlkp~NIll~~~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~----  216 (355)
T 2eu9_A          143 Q--LTHTDLKPENILFVNSEFETLYNEHKSCEEKSVKNTSIRVADFGSATFDHEHHTTIVATRHYRPPEVILELGW----  216 (355)
T ss_dssp             T--EECCCCCGGGEEESCCCEEEEECCC-CCCEEEESCCCEEECCCTTCEETTSCCCSSCSCGGGCCHHHHTTCCC----
T ss_pred             C--cccCCCCHHHEEEecccccccccccccccccccCCCcEEEeecCccccccccccCCcCCCcccCCeeeecCCC----
Confidence            8  99999999999994321               122369999999998754432  356777888876543321    


Q ss_pred             hhhcCcccchheeheecccCC
Q 024842          242 LLSCGTVRVIQILMRELMFGR  262 (262)
Q Consensus       242 ~~~~~~v~~~g~~~~~l~~G~  262 (262)
                       ....|+||+|+++|+|++|+
T Consensus       217 -~~~~Di~slG~il~el~~g~  236 (355)
T 2eu9_A          217 -AQPCDVWSIGCILFEYYRGF  236 (355)
T ss_dssp             -CTHHHHHHHHHHHHHHHHSS
T ss_pred             -CCccchHHHHHHHHHHHhCC
Confidence             12357888888888888774

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*

Probab=99.97  E-value=1.1e-30  Score=220.85  Aligned_cols=195  Identities=23%  Similarity=0.294  Sum_probs=146.8

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCC-
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFS-  103 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~-  103 (262)
                      .++|++.+.||+|+||.||+|++..+++                      .||+|++... ......+..|+.+++.++ 
T Consensus        53 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~----------------------~vaiK~~~~~-~~~~~~~~~e~~~l~~l~~  109 (382)
T 2vx3_A           53 MDRYEIDSLIGKGSFGQVVKAYDRVEQE----------------------WVAIKIIKNK-KAFLNQAQIEVRLLELMNK  109 (382)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTTE----------------------EEEEEEECSS-HHHHHHHHHHHHHHHHHHH
T ss_pred             eeeEEEEEEEeecCCEEEEEEEEcCCCc----------------------EEEEEEEecc-HHHHHHHHHHHHHHHHHHh
Confidence            5789999999999999999999876655                      6788876543 333466777888888775 


Q ss_pred             CCC-----ccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcC
Q 024842          104 HRN-----LLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSL  178 (262)
Q Consensus       104 h~~-----i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~  178 (262)
                      |++     ++++++.+          ......+++||++. ++|.+++....  ...+++..++.++.|++.||.|||+.
T Consensus       110 ~~~~~~~~iv~~~~~~----------~~~~~~~lv~e~~~-~~L~~~l~~~~--~~~~~~~~~~~i~~qi~~al~~lH~~  176 (382)
T 2vx3_A          110 HDTEMKYYIVHLKRHF----------MFRNHLCLVFEMLS-YNLYDLLRNTN--FRGVSLNLTRKFAQQMCTALLFLATP  176 (382)
T ss_dssp             CSSGGGGGBCCEEEEE----------EETTEEEEEEECCC-CBHHHHHHHTT--TSCCCHHHHHHHHHHHHHHHHHHTST
T ss_pred             cccccceeEEEeeeee----------ccCCceEEEEecCC-CCHHHHHhhcC--cCCCCHHHHHHHHHHHHHHHHHhccC
Confidence            553     77777776          33567999999885 59998886322  24589999999999999999999953


Q ss_pred             CCCeeecCCCCCcEEEecCCCCCCceEEeeccceeecccc--CccCcccCCcccchhhhhhhhhhhhhcCcccchheehe
Q 024842          179 EPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSK--FALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMR  256 (262)
Q Consensus       179 ~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~--~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~  256 (262)
                      ..+|+||||||+|||++.++.  ..+||+|||++......  ...+++.|.+||.+....+     ....||||+|+++|
T Consensus       177 ~~~ivHrDlkp~NIll~~~~~--~~~kL~DFG~a~~~~~~~~~~~~t~~y~aPE~~~~~~~-----~~~~DiwSlG~il~  249 (382)
T 2vx3_A          177 ELSIIHCDLKPENILLCNPKR--SAIKIVDFGSSCQLGQRIYQYIQSRFYRSPEVLLGMPY-----DLAIDMWSLGCILV  249 (382)
T ss_dssp             TTCEECCCCSGGGEEESSTTS--CCEEECCCTTCEETTCCCCSSCSCGGGCCHHHHTTCCC-----CTHHHHHHHHHHHH
T ss_pred             CCCEEcCCCCcccEEEecCCC--CcEEEEeccCceecccccccccCCccccChHHHcCCCC-----CcHHHHHHHHHHHH
Confidence            223999999999999964321  16999999999876543  2356777888876644321     12367888888888


Q ss_pred             ecccCC
Q 024842          257 ELMFGR  262 (262)
Q Consensus       257 ~l~~G~  262 (262)
                      +|++|+
T Consensus       250 elltg~  255 (382)
T 2vx3_A          250 EMHTGE  255 (382)
T ss_dssp             HHHHSS
T ss_pred             HHHhCC
Confidence            888775

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B

Probab=99.97  E-value=3e-31  Score=219.52  Aligned_cols=199  Identities=21%  Similarity=0.290  Sum_probs=144.9

Q ss_pred             ecCCceEEEEEeecccceEEEEEEec-ccccccccccccccccCCCCCCCCccceeehhhhccch--HHHHHHHHHHHHh
Q 024842           23 INENRYRILRQLGEGGFAYVYLVKET-VTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNN--EQLEMVREEIRVS   99 (262)
Q Consensus        23 ~~~~~y~~~~~ig~G~~g~V~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~--~~~~~~~~E~~~l   99 (262)
                      ...++|++.+.||+|+||.||+|++. .+++                      .||+|++.....  .....+.+|+.++
T Consensus         8 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~----------------------~vavK~~~~~~~~~~~~~~~~~e~~~l   65 (326)
T 1blx_A            8 RADQQYECVAEIGEGAYGKVFKARDLKNGGR----------------------FVALKRVRVQTGEEGMPLSTIREVAVL   65 (326)
T ss_dssp             CGGGTEEEEEEEEEETTEEEEEEEETTTTTE----------------------EEEEEEEEEEBCTTSCBCTHHHHHHHH
T ss_pred             CchhceeeeeeecccccEEEEEEEecCCCCE----------------------EEEEEEeccCcccccCCchhhHHHHHH
Confidence            34578999999999999999999985 3333                      577776654321  1112345566666


Q ss_pred             hhC---CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHH
Q 024842          100 SLF---SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMH  176 (262)
Q Consensus       100 ~~l---~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH  176 (262)
                      +.+   +||||+++++++..     .........+++||++. ++|.+++...  ....+++..++.++.|++.||.|||
T Consensus        66 ~~l~~~~h~~i~~~~~~~~~-----~~~~~~~~~~lv~e~~~-~~L~~~l~~~--~~~~~~~~~~~~~~~qi~~~l~~lH  137 (326)
T 1blx_A           66 RHLETFEHPNVVRLFDVCTV-----SRTDRETKLTLVFEHVD-QDLTTYLDKV--PEPGVPTETIKDMMFQLLRGLDFLH  137 (326)
T ss_dssp             HHHHHTCCTTBCCEEEEEEE-----EECSSEEEEEEEEECCS-CBHHHHHHHS--CTTCSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhhccCCCCeEeeeeeeee-----cccCCCceEEEEEecCC-CCHHHHHHhc--ccCCCCHHHHHHHHHHHHHHHHHHH
Confidence            555   89999999988631     01124567899999887 6999887632  2234899999999999999999999


Q ss_pred             cCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeecccc----CccCcccCCcccchhhhhhhhhhhhhcCcccchh
Q 024842          177 SLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSK----FALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQ  252 (262)
Q Consensus       177 ~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~----~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g  252 (262)
                      +.+  ++|+||||+||+++.++    .+||+|||++......    ...++..|.+||.+....     .....|+|++|
T Consensus       138 ~~g--i~H~dlkp~Nili~~~~----~~kl~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-----~~~~~Di~slG  206 (326)
T 1blx_A          138 SHR--VVHRDLKPQNILVTSSG----QIKLADFGLARIYSFQMALTSVVVTLWYRAPEVLLQSS-----YATPVDLWSVG  206 (326)
T ss_dssp             HTT--CCCCCCCGGGEEECTTC----CEEECSCCSCCCCCGGGGGCCCCCCCTTCCHHHHTTCC-----CCTHHHHHHHH
T ss_pred             HCC--ceeccCCHHHeEEcCCC----CEEEecCcccccccCCCCccccccccceeCHHHHhcCC-----CCcchhHHHHH
Confidence            999  99999999999998776    6999999999865532    234566777777553321     11235777777


Q ss_pred             eeheecccCC
Q 024842          253 ILMRELMFGR  262 (262)
Q Consensus       253 ~~~~~l~~G~  262 (262)
                      +++|+|++|+
T Consensus       207 ~il~~l~~g~  216 (326)
T 1blx_A          207 CIFAEMFRRK  216 (326)
T ss_dssp             HHHHHHHHSS
T ss_pred             HHHHHHHcCC
Confidence            7777777764

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A

Probab=99.97  E-value=3.8e-30  Score=209.34  Aligned_cols=173  Identities=15%  Similarity=0.090  Sum_probs=142.6

Q ss_pred             cCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc---chHHHHHHHHHHHHhh
Q 024842           24 NENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ---NNEQLEMVREEIRVSS  100 (262)
Q Consensus        24 ~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~---~~~~~~~~~~E~~~l~  100 (262)
                      ..++|++.+.||+|+||.||+|++..+++                      .||+|.+...   .....+.+.+|+..++
T Consensus        29 ~~~~y~i~~~lg~G~~g~Vy~a~~~~~~~----------------------~vavK~~~~~~~~~~~~~~~~~~e~~~l~   86 (286)
T 3uqc_A           29 ANGRYRLLIFHGGVPPLQFWQALDTALDR----------------------QVALTFVDPQGVLPDDVLQETLSRTLRLS   86 (286)
T ss_dssp             TTTTEEEEEEEEBSTTCEEEEEEETTTTE----------------------EEEEEESCTTCCSCHHHHHHHHHHHHHHH
T ss_pred             ecCcEEEEEEEcccCCeEEEEEEecCCCc----------------------eEEEEEECcccccCHHHHHHHHHHHHHHh
Confidence            35789999999999999999999987655                      6777776543   2344577889999999


Q ss_pred             hCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCC
Q 024842          101 LFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEP  180 (262)
Q Consensus       101 ~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~  180 (262)
                      .++||||+++++++          ...+..|++|||+.+++|.+++.    . . ....++..++.|++.||.|||+++ 
T Consensus        87 ~l~hp~iv~~~~~~----------~~~~~~~lv~e~~~g~~L~~~l~----~-~-~~~~~~~~i~~ql~~aL~~lH~~g-  149 (286)
T 3uqc_A           87 RIDKPGVARVLDVV----------HTRAGGLVVAEWIRGGSLQEVAD----T-S-PSPVGAIRAMQSLAAAADAAHRAG-  149 (286)
T ss_dssp             TCCCTTBCCEEEEE----------EETTEEEEEEECCCEEEHHHHHT----T-C-CCHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred             cCCCCCcceeeEEE----------EECCcEEEEEEecCCCCHHHHHh----c-C-CChHHHHHHHHHHHHHHHHHHHCC-
Confidence            99999999999987          33567999999999999999874    2 2 456678899999999999999999 


Q ss_pred             CeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccCccCcccCCcccchhhhhhhhhhhhhcCcccchh
Q 024842          181 PYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKFALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQ  252 (262)
Q Consensus       181 ~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g  252 (262)
                       |+||||||+|||++.++    .+||++++..           ..++...|+||+|++++++++. ..++.+
T Consensus       150 -ivH~Dikp~NIll~~~g----~~kl~~~~~~-----------~~~~~~~Di~slG~il~elltg-~~Pf~~  204 (286)
T 3uqc_A          150 -VALSIDHPSRVRVSIDG----DVVLAYPATM-----------PDANPQDDIRGIGASLYALLVN-RWPLPE  204 (286)
T ss_dssp             -CCCCCCSGGGEEEETTS----CEEECSCCCC-----------TTCCHHHHHHHHHHHHHHHHHS-EECSCC
T ss_pred             -CccCCCCcccEEEcCCC----CEEEEecccc-----------CCCCchhHHHHHHHHHHHHHHC-CCCCCc
Confidence             99999999999999877    6999876543           2467788999999999999874 444433

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}

Probab=99.97  E-value=3.5e-31  Score=227.12  Aligned_cols=214  Identities=19%  Similarity=0.189  Sum_probs=142.2

Q ss_pred             CCCcccchhhhhccCCCCCceeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehh
Q 024842            1 MGCSLSGLNALYDSVNGGGDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKK   80 (262)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~   80 (262)
                      ||++.|...+  +.....+.+.+...+|++.+.||+|+||.|+... ..+                      ++.||+|+
T Consensus         1 M~ss~s~~~~--~~~~~~~~~~i~~~~y~~~~~LG~G~~G~V~~~~-~~~----------------------~~~vAvK~   55 (432)
T 3p23_A            1 MGSSPSLEQD--DGDEETSVVIVGKISFCPKDVLGHGAEGTIVYRG-MFD----------------------NRDVAVKR   55 (432)
T ss_dssp             -------------------CEEETTEEEEEEEEEEECGGGCEEEEE-ESS----------------------SSEEEEEE
T ss_pred             CCCCcccccC--cCcccCCcEEEccEEEecCCeeecCcCEEEEEEE-EeC----------------------CeEEEEEE
Confidence            6665553332  3333445677778899999999999999965322 222                      33678887


Q ss_pred             hhccchHHHHHHHHHHHHhhhC-CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHH
Q 024842           81 VLIQNNEQLEMVREEIRVSSLF-SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTS  159 (262)
Q Consensus        81 ~~~~~~~~~~~~~~E~~~l~~l-~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~  159 (262)
                      +.....   ..+.+|+.+++.+ +||||+++++.+          ......|++||++. ++|.+++..   .....++.
T Consensus        56 ~~~~~~---~~~~~E~~~l~~l~~HpnIv~l~~~~----------~~~~~~~lv~E~~~-g~L~~~l~~---~~~~~~~~  118 (432)
T 3p23_A           56 ILPECF---SFADREVQLLRESDEHPNVIRYFCTE----------KDRQFQYIAIELCA-ATLQEYVEQ---KDFAHLGL  118 (432)
T ss_dssp             ECTTTE---EECHHHHHHHHHSCCCTTBCCEEEEE----------EETTEEEEEEECCS-EEHHHHHHS---SSCCCCSS
T ss_pred             ECHHHH---HHHHHHHHHHHhccCCCCcCeEEEEE----------ecCCEEEEEEECCC-CCHHHHHHh---cCCCccch
Confidence            654322   2245789999988 799999999877          34667899999886 589888762   23345566


Q ss_pred             HHHHHHHHHHHHHHHHHcCCCCeeecCCCCCcEEEecCC-CCCCceEEeeccceeecccc--------CccCcccCCccc
Q 024842          160 DVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRK-GQPPLAILMDFGSARPAQSK--------FALGQRRYSCRN  230 (262)
Q Consensus       160 ~~~~i~~ql~~~l~~lH~~~~~ivH~dikp~Nill~~~~-~~~~~~kl~Dfg~a~~~~~~--------~~~~~~~~~~~~  230 (262)
                      .++.++.|++.||.|||+.+  |+||||||+|||++.++ .....+||+|||+|......        ...+++.|.+||
T Consensus       119 ~~~~i~~qi~~aL~~LH~~~--ivHrDlKp~NIll~~~~~~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~gt~~y~APE  196 (432)
T 3p23_A          119 EPITLLQQTTSGLAHLHSLN--IVHRDLKPHNILISMPNAHGKIKAMISDFGLCKKLAVGRHSFSRRSGVPGTEGWIAPE  196 (432)
T ss_dssp             CHHHHHHHHHHHHHHHHHTT--CCCCCCSTTSEEECCCBTTTBCCEEECCTTEEECC------------CCSCTTSCCGG
T ss_pred             hHHHHHHHHHHHHHHHHHCc--CEeCCCCHHHEEEecCCCCCceeEEEecccceeeccCCCcceeeccccCCCcCccChh
Confidence            77899999999999999999  99999999999996433 23346889999999876532        134778888888


Q ss_pred             chhhhhhhhhhhhhcCcccchheeheeccc
Q 024842          231 GLLSIVLHLSELLSCGTVRVIQILMRELMF  260 (262)
Q Consensus       231 d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~  260 (262)
                      .+......  ......||||+|+++++|++
T Consensus       197 ~l~~~~~~--~~t~~~DiwSlG~il~ellt  224 (432)
T 3p23_A          197 MLSEDCKE--NPTYTVDIFSAGCVFYYVIS  224 (432)
T ss_dssp             GTSCC-----CCCTHHHHHHHHHHHHHHHT
T ss_pred             hhhccccc--CCCcHHHHHHHHHHHHHHHc
Confidence            65321111  11113578888888888877

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*

Probab=99.97  E-value=5.2e-30  Score=209.79  Aligned_cols=178  Identities=20%  Similarity=0.281  Sum_probs=142.1

Q ss_pred             CceEEE-EEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHh-hhCC
Q 024842           26 NRYRIL-RQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVS-SLFS  103 (262)
Q Consensus        26 ~~y~~~-~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l-~~l~  103 (262)
                      ++|.+. +.||+|+||.||+|.+..+++                      .||+|.+...     ....+|+.++ +..+
T Consensus        17 ~~y~~~~~~lg~G~~g~V~~~~~~~~~~----------------------~vaiK~~~~~-----~~~~~e~~~~~~~~~   69 (299)
T 3m2w_A           17 DDYKVTSQVLGLGINGKVLQIFNKRTQE----------------------KFALKMLQDC-----PKARREVELHWRASQ   69 (299)
T ss_dssp             GTEEEEEEEEEEETTEEEEEEEETTTCC----------------------EEEEEEEECS-----HHHHHHHHHHHHHTT
T ss_pred             cchhhcCcccccCCCeEEEEEEEcCCCc----------------------EEEEEEeccc-----HHHHHHHHHHHHhcc
Confidence            568777 789999999999999887655                      6777776432     3456777776 6679


Q ss_pred             CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCee
Q 024842          104 HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYA  183 (262)
Q Consensus       104 h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~iv  183 (262)
                      ||||+++++++..      ........+++||++.+++|.+++...  ....+++..++.++.|++.||.|||+.+  ++
T Consensus        70 h~~i~~~~~~~~~------~~~~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~i~~qi~~~l~~lH~~~--i~  139 (299)
T 3m2w_A           70 CPHIVRIVDVYEN------LYAGRKCLLIVMECLDGGELFSRIQDR--GDQAFTEREASEIMKSIGEAIQYLHSIN--IA  139 (299)
T ss_dssp             STTBCCEEEEEEE------EETTEEEEEEEECCCCSCBHHHHHHHC--TTCCCBHHHHHHHHHHHHHHHHHHHHTT--EE
T ss_pred             CCCchhHHhhhhh------hcCCCceEEEEEeecCCCcHHHHHHhc--cCCCCCHHHHHHHHHHHHHHHHHHHhCC--cc
Confidence            9999999988731      012256789999999999999988632  2245999999999999999999999999  99


Q ss_pred             ecCCCCCcEEEecCCCCCCceEEeeccceeeccccCccCcccCCcccchhhhhhhhhhhhhcCc
Q 024842          184 HNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKFALGQRRYSCRNGLLSIVLHLSELLSCGT  247 (262)
Q Consensus       184 H~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~d~~s~g~~~~e~~~~~~  247 (262)
                      ||||||+||+++.++. ...++|+|||++.....      ..|+...|+||+|++++++++...
T Consensus       140 H~dlkp~Nil~~~~~~-~~~~kl~Dfg~a~~~~~------~~~~~~~DiwslG~il~el~tg~~  196 (299)
T 3m2w_A          140 HRDVKPENLLYTSKRP-NAILKLTDFGFAKETTG------EKYDKSCDMWSLGVIMYILLCGYP  196 (299)
T ss_dssp             CCCCSGGGEEESSSST-TCCEEECCCTTCEECTT------CGGGGHHHHHHHHHHHHHHHHSSC
T ss_pred             cCCCCHHHEEEecCCC-CCcEEEecccccccccc------ccCCchhhHHHHHHHHHHHHHCCC
Confidence            9999999999986321 12699999999976543      457788899999999999988433

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=99.96  E-value=4e-31  Score=234.84  Aligned_cols=202  Identities=18%  Similarity=0.186  Sum_probs=151.7

Q ss_pred             CceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc-chHHHHHHHHHHHHhhhCCC
Q 024842           26 NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ-NNEQLEMVREEIRVSSLFSH  104 (262)
Q Consensus        26 ~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~-~~~~~~~~~~E~~~l~~l~h  104 (262)
                      ++|++.+.||+|+||.||+|.+..+++                      .||+|++... .....+.+.+|+.+++.++|
T Consensus        14 grY~i~~~LG~G~fG~Vyla~~~~tg~----------------------~VAVKvi~~~~~~~~~~~~~~Ei~iL~~L~H   71 (676)
T 3qa8_A           14 GPWEMKERLGTGGFGYVLRWIHQDTGE----------------------QVAIKQCRQELSPKNRERWCLEIQIMKKLNH   71 (676)
T ss_dssp             ---CCCCCCCBCSSSBCCCCCCTTTTC----------------------CEEECCCCSCCCHHHHHHHHHHHHHHHHCCB
T ss_pred             CCeEEEEEEeeCCCeEEEEEEECCCCc----------------------EEEEEEecccCCHHHHHHHHHHHHHHHhCCC
Confidence            689999999999999999999876654                      6777776543 34445778899999999999


Q ss_pred             CCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeee
Q 024842          105 RNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAH  184 (262)
Q Consensus       105 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH  184 (262)
                      |||+++++++...    .........+++|||+.+++|.+++.... ....+++..++.++.|++.||.|||+.+  |+|
T Consensus        72 pnIV~l~~v~~~~----~~~~~~~~~~LVmEy~~ggsL~~~L~~~~-~~~~lse~~i~~I~~QLl~aL~yLHs~g--IVH  144 (676)
T 3qa8_A           72 PNVVSAREVPDGL----QKLAPNDLPLLAMEYCEGGDLRKYLNQFE-NCCGLKEGPIRTLLSDISSALRYLHENR--IIH  144 (676)
T ss_dssp             TTBCCEEECCTTT----CCCCTTSSCCCEEECCSSCBHHHHHHSSS-CTTCCCSSHHHHHHHHHHHHHHHHHHTT--BCC
T ss_pred             CCCCceeeeeccc----ccccCCCeEEEEEEeCCCCCHHHHHHhcc-cCCCCCHHHHHHHHHHHHHHHHHHHHCC--Ccc
Confidence            9999998876310    01122567899999999999999886322 1235899999999999999999999999  999


Q ss_pred             cCCCCCcEEEecCCCCCCceEEeeccceeeccccC----ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheeccc
Q 024842          185 NDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMF  260 (262)
Q Consensus       185 ~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~  260 (262)
                      |||||+||+++.++. ...++|+|||++.......    ..++..|.+||.+....     .....|+|++|+++|+|++
T Consensus       145 rDLKP~NILl~~~g~-~~~vKL~DFG~a~~~~~~~~~~~~~gt~~Y~APE~l~~~~-----~s~ksDIwSLGviLyeLlt  218 (676)
T 3qa8_A          145 RDLKPENIVLQPGPQ-RLIHKIIDLGYAKELDQGELCTEFVGTLQYLAPELLEQKK-----YTVTVDYWSFGTLAFECIT  218 (676)
T ss_dssp             CCCCSTTEEEECCSS-SCEEEECSCCCCCBTTSCCCCCCCCSCCTTCSSCSSCCSC-----CSTTHHHHHHHHHHHHHHS
T ss_pred             CCCCHHHeEeecCCC-ceeEEEcccccccccccccccccccCCcccCChHHhccCC-----CCchhHHHHHHHHHHHHHH
Confidence            999999999987653 3368999999998765432    24667777777553221     1123567777777777776


Q ss_pred             CC
Q 024842          261 GR  262 (262)
Q Consensus       261 G~  262 (262)
                      |+
T Consensus       219 G~  220 (676)
T 3qa8_A          219 GF  220 (676)
T ss_dssp             SC
T ss_pred             CC
Confidence            63

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=99.96  E-value=5.6e-30  Score=218.63  Aligned_cols=208  Identities=14%  Similarity=0.203  Sum_probs=142.3

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccch---HHHHHHHHHHHHhhh
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNN---EQLEMVREEIRVSSL  101 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~---~~~~~~~~E~~~l~~  101 (262)
                      ..+|+..+.||+|+||.||+|++..+++                      .||+|++.....   ...+.+.+|+.+++.
T Consensus        77 ~~~~~~~~~LG~G~fG~Vy~a~~~~~g~----------------------~vAvK~~~~~~~~~~~~~~~~~~E~~~~~~  134 (413)
T 3dzo_A           77 PRTLVRGTVLGQEDPYAYLEATDQETGE----------------------SFEVHVPYFTERPPSNAIKQMKEEVLRLRL  134 (413)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEETTTCC----------------------EEEEEEECCSCC----CCHHHHHHHHGGGG
T ss_pred             ceeEEEecccccCCCEEEEEEEecCCCC----------------------ceEEEEEecCCCccHHHHHHHHHHHHHHHh
Confidence            3468999999999999999999987765                      567776553322   224678899999999


Q ss_pred             CCC-CCccchhhhhHH----------------HhhhccCCCCcceeEEEEeecCCCchhhHHHHhh---hcCCCCCHHHH
Q 024842          102 FSH-RNLLPLLDHAII----------------AVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQ---TKKEFFSTSDV  161 (262)
Q Consensus       102 l~h-~~i~~~~~~~~~----------------~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~---~~~~~~~~~~~  161 (262)
                      ++| +|........-.                .........+....+++|+ ...++|.+++....   .....+++..+
T Consensus       135 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~~ll~~l~~~~~~~~~l~~~~~  213 (413)
T 3dzo_A          135 LRGIKNQKQAKVHLRFIFPFDLVKDPQKKKMIRVRLDERDMWVLSRFFLYP-RMQSNLQTFGEVLLSHSSTHKSLVHHAR  213 (413)
T ss_dssp             STTCCSHHHHHHHTCBCCCCEEEECCC---------------CCSEEEEEE-CCSEEHHHHHHHHHHHTTTSHHHHHHHH
T ss_pred             hccCCCHHHHHHhcccccchhhcccCCCCccccccCCCccccccceEEEee-hhcCCHHHHHHHhhcccccCCCCCHHHH
Confidence            987 443333222000                0000000111234566666 56789998886442   22445788899


Q ss_pred             HHHHHHHHHHHHHHHcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC--ccCcccCCcccchhhhhh--
Q 024842          162 LQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF--ALGQRRYSCRNGLLSIVL--  237 (262)
Q Consensus       162 ~~i~~ql~~~l~~lH~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~--~~~~~~~~~~~d~~s~g~--  237 (262)
                      +.++.|++.||.|||+++  |+||||||+|||++.++    .+||+|||++.......  ..+ ..|.+||.+...+.  
T Consensus       214 ~~i~~qi~~aL~~LH~~~--iiHrDiKp~NILl~~~~----~~kL~DFG~a~~~~~~~~~~~g-~~y~aPE~~~~~~~~~  286 (413)
T 3dzo_A          214 LQLTLQVIRLLASLHHYG--LVHTYLRPVDIVLDQRG----GVFLTGFEHLVRDGASAVSPIG-RGFAPPETTAERMLPF  286 (413)
T ss_dssp             HHHHHHHHHHHHHHHHTT--EECSCCCGGGEEECTTC----CEEECCGGGCEETTEEECCCCC-TTTCCHHHHHHHTSTT
T ss_pred             HHHHHHHHHHHHHHHhCC--cccCCcccceEEEecCC----eEEEEeccceeecCCccccCCC-CceeCchhhhcccccc
Confidence            999999999999999999  99999999999998877    59999999998765432  245 77888876632210  


Q ss_pred             ---hhhhhhhcCcccchheeheecccCC
Q 024842          238 ---HLSELLSCGTVRVIQILMRELMFGR  262 (262)
Q Consensus       238 ---~~~e~~~~~~v~~~g~~~~~l~~G~  262 (262)
                         .........||||+|+++|+|++|+
T Consensus       287 ~~~~~~~~~~~~DvwSlGvil~elltg~  314 (413)
T 3dzo_A          287 GQHHPTLMTFAFDTWTLGLAIYWIWCAD  314 (413)
T ss_dssp             GGGCCEEECHHHHHHHHHHHHHHHHHSS
T ss_pred             ccccCcCCCchhhHHHHHHHHHHHHHCC
Confidence               1111223468999999999998885

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}

Probab=99.96  E-value=2.9e-31  Score=218.93  Aligned_cols=202  Identities=17%  Similarity=0.151  Sum_probs=145.2

Q ss_pred             CCCCceeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc--chHHHHHHH
Q 024842           16 NGGGDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ--NNEQLEMVR   93 (262)
Q Consensus        16 ~~~~~~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~--~~~~~~~~~   93 (262)
                      .......+..++|++.+.||+|+||.||+|++..                         .+++|.+...  .....+.+.
T Consensus        23 ~~~~~~~i~~~~~~~~~~lg~G~~g~V~~~~~~~-------------------------~~avk~~~~~~~~~~~~~~~~   77 (319)
T 2y4i_B           23 IFLQEWDIPFEQLEIGELIGKGRFGQVYHGRWHG-------------------------EVAIRLIDIERDNEDQLKAFK   77 (319)
T ss_dssp             CCGGGSSSCCSCEECCCBCCCSSSSEEEEEEESS-------------------------SEEEEECCCCSCCCCCCCCCC
T ss_pred             cccccccCCHHHeEEeeEeccCCceEEEEEEEcC-------------------------eEEEEEeecCCCCHHHHHHHH
Confidence            3334555778999999999999999999998743                         2455544332  111224466


Q ss_pred             HHHHHhhhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHH
Q 024842           94 EEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLK  173 (262)
Q Consensus        94 ~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~  173 (262)
                      +|+.+++.++||||+++++++.          .....+++||++.+++|.+++..   ....+++..++.++.|++.||.
T Consensus        78 ~e~~~l~~l~h~~iv~~~~~~~----------~~~~~~iv~e~~~~~~L~~~l~~---~~~~~~~~~~~~i~~qi~~al~  144 (319)
T 2y4i_B           78 REVMAYRQTRHENVVLFMGACM----------SPPHLAIITSLCKGRTLYSVVRD---AKIVLDVNKTRQIAQEIVKGMG  144 (319)
T ss_dssp             TTGGGGTTCCCTTBCCCCEEEE----------CSSCEEEECBCCCSEEHHHHTTS---SCCCCCSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCCCEeEEEEEEe----------cCCceEEEeecccCCcHHHHHHh---cCCCCCHHHHHHHHHHHHHHHH
Confidence            7899999999999999999873          35568999999999999998752   3346899999999999999999


Q ss_pred             HHHcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeecccc----------CccCcccCCcccchhhhhhh----h
Q 024842          174 HMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSK----------FALGQRRYSCRNGLLSIVLH----L  239 (262)
Q Consensus       174 ~lH~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~----------~~~~~~~~~~~~d~~s~g~~----~  239 (262)
                      |||+.+  ++||||||+||+++. +    .++|+|||++......          ...++..|.+||.+......    .
T Consensus       145 ~lH~~~--i~H~dlkp~NIl~~~-~----~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~  217 (319)
T 2y4i_B          145 YLHAKG--ILHKDLKSKNVFYDN-G----KVVITDFGLFSISGVLQAGRREDKLRIQNGWLCHLAPEIIRQLSPDTEEDK  217 (319)
T ss_dssp             HHHHTT--CCCCCCCSTTEEEC-------CCEECCCSCCC----------CCSCBCCSGGGGTSCHHHHSCBSCC--CCC
T ss_pred             HHHhCC--ccccCCChhhEEEeC-C----CEEEeecCCccccccccccccccccccCCCcccccChHHhhhccccccccc
Confidence            999999  999999999999973 3    5999999997654311          12355566666644321100    0


Q ss_pred             hhhhhcCcccchheeheecccCC
Q 024842          240 SELLSCGTVRVIQILMRELMFGR  262 (262)
Q Consensus       240 ~e~~~~~~v~~~g~~~~~l~~G~  262 (262)
                      .......|+|++|+++|+|++|+
T Consensus       218 ~~~~~~~Di~slG~il~el~~g~  240 (319)
T 2y4i_B          218 LPFSKHSDVFALGTIWYELHARE  240 (319)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHSS
T ss_pred             cCCCchhhHHHHHHHHHHHHhCC
Confidence            01122357788888888777774

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*

Probab=99.96  E-value=4.4e-30  Score=220.63  Aligned_cols=197  Identities=19%  Similarity=0.227  Sum_probs=136.0

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhC-C
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLF-S  103 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l-~  103 (262)
                      .+.|.+.+.||+|+||+||.+.. .+                      +..||+|++....   .+.+.+|+.+++.+ +
T Consensus        14 ~~~~~~~~~LG~G~~g~V~~~~~-~~----------------------g~~vAvK~~~~~~---~~~~~~E~~~l~~l~~   67 (434)
T 2rio_A           14 KNLVVSEKILGYGSSGTVVFQGS-FQ----------------------GRPVAVKRMLIDF---CDIALMEIKLLTESDD   67 (434)
T ss_dssp             SSCEEEEEEEEECSTTCEEEEEE-SS----------------------SSEEEEEEEEGGG---HHHHHHHHHHHHHHTT
T ss_pred             hheeeccCeEeeCCCeEEEEEEE-EC----------------------CeEEEEEEEcHHH---HHHHHHHHHHHHhccC
Confidence            46678889999999999986543 22                      3478888775433   24567899998865 8


Q ss_pred             CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCC---CCHHHHHHHHHHHHHHHHHHHcCCC
Q 024842          104 HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEF---FSTSDVLQIFYQICAGLKHMHSLEP  180 (262)
Q Consensus       104 h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~---~~~~~~~~i~~ql~~~l~~lH~~~~  180 (262)
                      ||||+++++.+          ......+++||++. ++|.+++.........   .++..++.++.|++.||+|||+++ 
T Consensus        68 HpnIv~~~~~~----------~~~~~~~lv~E~~~-gsL~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~-  135 (434)
T 2rio_A           68 HPNVIRYYCSE----------TTDRFLYIALELCN-LNLQDLVESKNVSDENLKLQKEYNPISLLRQIASGVAHLHSLK-  135 (434)
T ss_dssp             STTBCCEEEEE----------ECSSEEEEEECCCS-EEHHHHHHTC------------CCHHHHHHHHHHHHHHHHHTT-
T ss_pred             CCCcCeEEEEE----------ecCCeEEEEEecCC-CCHHHHHhccCCCchhhhhccchhHHHHHHHHHHHHHHHHHCC-
Confidence            99999999876          34567899999985 6999988632211111   133346789999999999999999 


Q ss_pred             CeeecCCCCCcEEEecCC---------CCCCceEEeeccceeeccccC---------ccCcccCCcccchhhhhh--hhh
Q 024842          181 PYAHNDVKPGNILITCRK---------GQPPLAILMDFGSARPAQSKF---------ALGQRRYSCRNGLLSIVL--HLS  240 (262)
Q Consensus       181 ~ivH~dikp~Nill~~~~---------~~~~~~kl~Dfg~a~~~~~~~---------~~~~~~~~~~~d~~s~g~--~~~  240 (262)
                       |+||||||+|||++.++         .....+||+|||++.......         ..+++.|.+||-+.....  ...
T Consensus       136 -ivHrDLkp~NILl~~~~~~~~~~~~~~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~  214 (434)
T 2rio_A          136 -IIHRDLKPQNILVSTSSRFTADQQTGAENLRILISDFGLCKKLDSGQSSFRTNLNNPSGTSGWRAPELLEESNNLQTKR  214 (434)
T ss_dssp             -EECCCCSGGGEEEECCHHHHSCCTTCCCSCEEEECCCTTCEECCC--------------CCTTSCHHHHSCCCTTSCCC
T ss_pred             -ccccCCChHhEEEecCcccccccccCCCceEEEEcccccceecCCCCccceeeecCCCCCCCccCHHHhcccccccccc
Confidence             99999999999997642         233479999999998765432         246677777775533110  001


Q ss_pred             hhhhcCcccchheeheeccc
Q 024842          241 ELLSCGTVRVIQILMRELMF  260 (262)
Q Consensus       241 e~~~~~~v~~~g~~~~~l~~  260 (262)
                      ......||||+|+++|||++
T Consensus       215 ~~~~~~DiwSlG~il~ellt  234 (434)
T 2rio_A          215 RLTRSIDIFSMGCVFYYILS  234 (434)
T ss_dssp             CCCTHHHHHHHHHHHHHHHT
T ss_pred             CcchhhhhHhHHHHHHHHHh
Confidence            11223577777777777776

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.95  E-value=1.3e-28  Score=217.48  Aligned_cols=179  Identities=18%  Similarity=0.179  Sum_probs=121.9

Q ss_pred             EEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc----------chHHHHHHHHHHHHhhh
Q 024842           32 RQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ----------NNEQLEMVREEIRVSSL  101 (262)
Q Consensus        32 ~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~----------~~~~~~~~~~E~~~l~~  101 (262)
                      ...+.|+.|....++....++                      .+++|.+...          .....+++.+|+++|+.
T Consensus       240 ~~~~~~~~~~h~~~rr~~fg~----------------------~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~  297 (569)
T 4azs_A          240 NQPYAGAGLAHKRSRRYFFGE----------------------DYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQ  297 (569)
T ss_dssp             CC-C--------CCEEEEECS----------------------SEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHS
T ss_pred             hccccCCcccccccccccccc----------------------eeEEEEEecccccccchhhhhHHHHHHHHHHHHHHHh
Confidence            345667777777766666655                      4555544321          23345679999999999


Q ss_pred             C-CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCC
Q 024842          102 F-SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEP  180 (262)
Q Consensus       102 l-~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~  180 (262)
                      + .|+||+++++++          ++....|+||||+.|++|.+++.    ...++++.   .++.||+.||+|+|++| 
T Consensus       298 ~~~~~~i~~~~~~~----------ed~~~~yLVMEyv~G~~L~d~i~----~~~~l~~~---~I~~QIl~AL~ylH~~G-  359 (569)
T 4azs_A          298 PPAGFDAPAVLAHG----------ENAQSGWLVMEKLPGRLLSDMLA----AGEEIDRE---KILGSLLRSLAALEKQG-  359 (569)
T ss_dssp             CCTTCCCCCEEEEE----------ECSSEEEEEEECCCSEEHHHHHH----TTCCCCHH---HHHHHHHHHHHHHHHTT-
T ss_pred             cCCCCCeeEEEEEE----------EECCEEEEEEecCCCCcHHHHHH----hCCCCCHH---HHHHHHHHHHHHHHHCC-
Confidence            9 699999999988          55788999999999999999997    55667765   47899999999999999 


Q ss_pred             CeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccCccCcccCCcccchhhhhhhhhhhhh-----cCcccchheeh
Q 024842          181 PYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKFALGQRRYSCRNGLLSIVLHLSELLS-----CGTVRVIQILM  255 (262)
Q Consensus       181 ~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~d~~s~g~~~~e~~~-----~~~v~~~g~~~  255 (262)
                       |+||||||+|||++.++    .+||+|||+|+.......      .....+++.+++.+|++.     ..|+|++|+.+
T Consensus       360 -IIHRDIKPeNILL~~dg----~vKL~DFGlAr~~~~~~~------~~~t~vGTp~YmAPE~l~g~~~~~~d~~s~g~~~  428 (569)
T 4azs_A          360 -FWHDDVRPWNVMVDARQ----HARLIDFGSIVTTPQDCS------WPTNLVQSFFVFVNELFAENKSWNGFWRSAPVHP  428 (569)
T ss_dssp             -CEESCCCGGGEEECTTS----CEEECCCTTEESCC---C------CSHHHHHHHHHHHHHHC-----------------
T ss_pred             -ceeccCchHhEEECCCC----CEEEeecccCeeCCCCCc------cccCceechhhccHHHhCCCCCCcccccccccch
Confidence             99999999999998877    699999999986544321      123356777777777764     35789999988


Q ss_pred             eecccC
Q 024842          256 RELMFG  261 (262)
Q Consensus       256 ~~l~~G  261 (262)
                      +++.+|
T Consensus       429 ~~l~~~  434 (569)
T 4azs_A          429 FNLPQP  434 (569)
T ss_dssp             CCCCTT
T ss_pred             hhhccc
Confidence            888765

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=99.90  E-value=1.1e-24  Score=191.49  Aligned_cols=172  Identities=15%  Similarity=0.069  Sum_probs=115.7

Q ss_pred             EEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhc--------cchHHHHHHHHHHHHhh
Q 024842           29 RILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLI--------QNNEQLEMVREEIRVSS  100 (262)
Q Consensus        29 ~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~--------~~~~~~~~~~~E~~~l~  100 (262)
                      ...+.||+|+||.||+|...  ++                      .+++|+...        ......+.+.+|+.+++
T Consensus       339 ~~~~~LG~G~fg~Vy~~~~~--~~----------------------~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~  394 (540)
T 3en9_A          339 IPEHLIGKGAEADIKRDSYL--DF----------------------DVIIKERVKKGYRDERLDENIRKSRTAREARYLA  394 (540)
T ss_dssp             ---------CCEEEEEEECS--SC----------------------EEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCEEeeCCCEEEEEEEEC--CC----------------------eEEEEEEecccccchhhhhHHHHHHHHHHHHHHH
Confidence            34668999999999999543  22                      233333211        11223456899999999


Q ss_pred             hCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCC
Q 024842          101 LFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEP  180 (262)
Q Consensus       101 ~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~  180 (262)
                      .++||||+++..++.          .....|++|||+.+++|.+++..            +..++.|++.||.|||+++ 
T Consensus       395 ~l~h~nIv~~~~~~~----------~~~~~~lVmE~~~ggsL~~~l~~------------~~~i~~qi~~aL~~LH~~g-  451 (540)
T 3en9_A          395 LVKDFGIPAPYIFDV----------DLDNKRIMMSYINGKLAKDVIED------------NLDIAYKIGEIVGKLHKND-  451 (540)
T ss_dssp             HGGGGTCCCCCEEEE----------ETTTTEEEEECCCSEEHHHHSTT------------CTHHHHHHHHHHHHHHHTT-
T ss_pred             hcCCCCcCceEEEEE----------eCCccEEEEECCCCCCHHHHHHH------------HHHHHHHHHHHHHHHHHCc-
Confidence            999999995543332          14456999999999999998752            5688999999999999999 


Q ss_pred             CeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC------------ccCcccCCcccchhhhhhhhhhhhhcCcc
Q 024842          181 PYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF------------ALGQRRYSCRNGLLSIVLHLSELLSCGTV  248 (262)
Q Consensus       181 ~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~------------~~~~~~~~~~~d~~s~g~~~~e~~~~~~v  248 (262)
                       |+||||||+|||++.      .+||+|||+|+......            ..+++.|++||-+-.. ...+.  ..-|.
T Consensus       452 -IiHrDiKp~NILl~~------~~kL~DFGla~~~~~~~~~~~~~~~~~~~~~GT~~y~APEv~~~~-~~~Y~--~~~d~  521 (540)
T 3en9_A          452 -VIHNDLTTSNFIFDK------DLYIIDFGLGKISNLDEDKAVDLIVFKKAVLSTHHEKFDEIWERF-LEGYK--SVYDR  521 (540)
T ss_dssp             -EECTTCCTTSEEESS------SEEECCCTTCEECCCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHH-HHHHH--HHCTT
T ss_pred             -CccCCCCHHHEEECC------eEEEEECccCEECCCccccccchhhhhhhhcCCCCcCCHHHHHHH-HHHHH--HHHhH
Confidence             999999999999975      49999999999876532            2466777777655332 11111  12367


Q ss_pred             cchheehee
Q 024842          249 RVIQILMRE  257 (262)
Q Consensus       249 ~~~g~~~~~  257 (262)
                      |+..+-..+
T Consensus       522 ws~vl~~l~  530 (540)
T 3en9_A          522 WEIILELMK  530 (540)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            766554444

>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*

Probab=99.90  E-value=2.4e-23  Score=168.60  Aligned_cols=137  Identities=14%  Similarity=0.130  Sum_probs=105.1

Q ss_pred             CceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccch------------------H
Q 024842           26 NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNN------------------E   87 (262)
Q Consensus        26 ~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~------------------~   87 (262)
                      ..|.+.+.||+|+||.||+|.+ .+++                      .+|+|.+.....                  .
T Consensus        90 ~~~~~~~~iG~G~~g~Vy~~~~-~~g~----------------------~valK~~~~~~~~~~~~~~~~~~~~~~w~~~  146 (282)
T 1zar_A           90 KVDAIGKLMGEGKESAVFNCYS-EKFG----------------------ECVVKFHKVGHTSFKKVKEKRDYGDLHFSVL  146 (282)
T ss_dssp             SCSEEEEEEEECSSEEEEEEEE-TTTE----------------------EEEEEEECC------CCCC-------CHHHH
T ss_pred             eEEEecCEeccCCCceEEEEEe-CCCC----------------------EEEEEEEECCCCchhhhhhhhhhcchhhHHH
Confidence            3455669999999999999998 5444                      566665542211                  2


Q ss_pred             HHHHHHHHHHHhhhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHH
Q 024842           88 QLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQ  167 (262)
Q Consensus        88 ~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~q  167 (262)
                      ....+.+|+.+++.++  | +++.+.+.           ....+++|||+.+++|.+ +.    .      .....++.|
T Consensus       147 ~~~~~~~E~~~l~~l~--~-~~v~~~~~-----------~~~~~lvmE~~~g~~L~~-l~----~------~~~~~i~~q  201 (282)
T 1zar_A          147 AIRSARNEFRALQKLQ--G-LAVPKVYA-----------WEGNAVLMELIDAKELYR-VR----V------ENPDEVLDM  201 (282)
T ss_dssp             HHHHHHHHHHHHHHTT--T-SSSCCEEE-----------EETTEEEEECCCCEEGGG-CC----C------SCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcc--C-CCcCeEEe-----------ccceEEEEEecCCCcHHH-cc----h------hhHHHHHHH
Confidence            3467889999999998  4 55555431           345799999999999987 32    1      224569999


Q ss_pred             HHHHHHHHHcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccc
Q 024842          168 ICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQS  217 (262)
Q Consensus       168 l~~~l~~lH~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~  217 (262)
                      ++.||.|||+.+  |+||||||+|||++ ++    .+||+|||+|.....
T Consensus       202 i~~~l~~lH~~g--iiHrDlkp~NILl~-~~----~vkl~DFG~a~~~~~  244 (282)
T 1zar_A          202 ILEEVAKFYHRG--IVHGDLSQYNVLVS-EE----GIWIIDFPQSVEVGE  244 (282)
T ss_dssp             HHHHHHHHHHTT--EECSCCSTTSEEEE-TT----EEEECCCTTCEETTS
T ss_pred             HHHHHHHHHHCC--CEeCCCCHHHEEEE-CC----cEEEEECCCCeECCC
Confidence            999999999999  99999999999999 65    699999999976543

>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*

Probab=99.86  E-value=5.4e-22  Score=158.77  Aligned_cols=159  Identities=16%  Similarity=0.151  Sum_probs=101.8

Q ss_pred             CceEEEEEeecccceEEEEEEecccccc--cccccccccccCCCCCCCCcccee-----ehhhhc-cchHHHHHHHHHHH
Q 024842           26 NRYRILRQLGEGGFAYVYLVKETVTTDA--SAASGGLANKVKDPSHLSDDGTYA-----MKKVLI-QNNEQLEMVREEIR   97 (262)
Q Consensus        26 ~~y~~~~~ig~G~~g~V~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-----ik~~~~-~~~~~~~~~~~E~~   97 (262)
                      .-|++.+.||+|+||.||+|.+..+++.  +|+|........    ......+.     ...... ........+.+|+.
T Consensus        47 ~~~~i~~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~  122 (258)
T 1zth_A           47 YITAMGGVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSE----FDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFR  122 (258)
T ss_dssp             SEEEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEECCC-----------GGGTTTCTTSCC----CHHHHHHHHHHHHH
T ss_pred             CchhhCCEEeecceEEEEEEEEcCCCcEeeEEEEEEECCccc----hhhHHHhhcccchhhhhccChHHHHHHHHHHHHH
Confidence            3478999999999999999998655554  444421000000    00000000     000000 01112246788999


Q ss_pred             HhhhCCCCCc--cchhhhhHHHhhhccCCCCcceeEEEEeecCC-C----chhhHHHHhhhcCCCCCHHHHHHHHHHHHH
Q 024842           98 VSSLFSHRNL--LPLLDHAIIAVKANQEGSWKHEAYLLFPVHLD-G----TLLDHAKVMQTKKEFFSTSDVLQIFYQICA  170 (262)
Q Consensus        98 ~l~~l~h~~i--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~----~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~  170 (262)
                      +++.+.|+++  +.++.              ....+++|||+.+ |    +|.+...    .   .++..+..++.|++.
T Consensus       123 ~l~~l~~~~i~~p~~~~--------------~~~~~lVmE~~g~~g~~~~~L~~~~~----~---~~~~~~~~i~~qi~~  181 (258)
T 1zth_A          123 NLERAKEAGVSVPQPYT--------------YMKNVLLMEFIGEDELPAPTLVELGR----E---LKELDVEGIFNDVVE  181 (258)
T ss_dssp             HHHHHHHTTCCCCCEEE--------------EETTEEEEECCEETTEECCBHHHHGG----G---GGGSCHHHHHHHHHH
T ss_pred             HHHHHHhCCCCCCeEEE--------------cCCCEEEEEecCCCCCccccHHHHhh----c---cChHHHHHHHHHHHH
Confidence            9999988764  22221              2356899999842 3    5554321    1   234567889999999


Q ss_pred             HHHHHH-cCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccc
Q 024842          171 GLKHMH-SLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQS  217 (262)
Q Consensus       171 ~l~~lH-~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~  217 (262)
                      +|.+|| +.+  |+||||||+|||++.      .++|+|||+|.....
T Consensus       182 ~l~~lH~~~g--ivHrDlkp~NILl~~------~~~liDFG~a~~~~~  221 (258)
T 1zth_A          182 NVKRLYQEAE--LVHADLSEYNIMYID------KVYFIDMGQAVTLRH  221 (258)
T ss_dssp             HHHHHHHTSC--EECSSCSTTSEEESS------SEEECCCTTCEETTS
T ss_pred             HHHHHHHHCC--EEeCCCCHHHEEEcC------cEEEEECcccccCCC
Confidence            999999 888  999999999999975      399999999987543

>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A

Probab=99.74  E-value=3e-18  Score=142.92  Aligned_cols=167  Identities=11%  Similarity=0.102  Sum_probs=95.5

Q ss_pred             ceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCCCCC
Q 024842           27 RYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSHRN  106 (262)
Q Consensus        27 ~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~h~~  106 (262)
                      -|.+..+||.|++|.||+|.+.. ++.+|+|....-.. ..........+.     ....  ......+.++.....|+|
T Consensus        96 iY~I~~~IG~Gk~a~VY~a~d~~-G~~vAvKi~r~~~~-sfr~v~~~r~~~-----~~~~--~~~~~~~~rl~A~kE~~n  166 (397)
T 4gyi_A           96 VYSVGSRIGVGKESDIMIVADEK-GKQKVLKIHRLGRI-SFRTVKANRDYL-----RNRS--TGSWMYLSRLAAIKEFAF  166 (397)
T ss_dssp             CSEEEEEEEECSSEEEEEEECTT-CCEEEEEEECTTEE-CCCCCC--CEEC-----TTSC--HHHHHHHHHHHHHHHHHH
T ss_pred             EEEecCEeeeCCceEEEEEECCC-CCEEEEEEEecccc-cHHHHHHHHHHH-----Hhhc--cccHHHHHHHHHHHHHHH
Confidence            38999999999999999999853 45444442110000 000000000000     0000  011122222333334445


Q ss_pred             ccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeeecC
Q 024842          107 LLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHND  186 (262)
Q Consensus       107 i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~d  186 (262)
                      +.+++...+....   + -.....+++|||+.+.+|.++..        .  +....++.|++.+|.+||++|  |+|||
T Consensus       167 L~rL~~~gv~vp~---p-~~~~~~~LVME~i~G~~L~~l~~--------~--~~~~~l~~qll~~l~~lH~~g--IVHrD  230 (397)
T 4gyi_A          167 MKALYEEGFPVPE---P-IAQSRHTIVMSLVDALPMRQVSS--------V--PDPASLYADLIALILRLAKHG--LIHGD  230 (397)
T ss_dssp             HHHHHHTTCSCCC---E-EEEETTEEEEECCSCEEGGGCCC--------C--SCHHHHHHHHHHHHHHHHHTT--EECSC
T ss_pred             HHHHHhcCCCCCe---e-eeccCceEEEEecCCccHhhhcc--------c--HHHHHHHHHHHHHHHHHHHCC--CcCCC
Confidence            5444433210000   0 00123479999999988876432        1  124567899999999999999  99999


Q ss_pred             CCCCcEEEecCCCCC------CceEEeeccceeecccc
Q 024842          187 VKPGNILITCRKGQP------PLAILMDFGSARPAQSK  218 (262)
Q Consensus       187 ikp~Nill~~~~~~~------~~~kl~Dfg~a~~~~~~  218 (262)
                      |||.|||++.++...      ..+.|+||+-+.....+
T Consensus       231 LKp~NILl~~dgd~~d~~~~~~~~~iID~~Q~V~~~hp  268 (397)
T 4gyi_A          231 FNEFNILIREEKDAEDPSSITLTPIIIXFPQMVSMDHP  268 (397)
T ss_dssp             CSTTSEEEEEEECSSCTTSEEEEEEECCCTTCEETTST
T ss_pred             CCHHHEEEeCCCCcccccccccceEEEEeCCcccCCCC
Confidence            999999998765211      13789999988765433

>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*

Probab=99.35  E-value=7.9e-13  Score=105.56  Aligned_cols=142  Identities=15%  Similarity=0.159  Sum_probs=101.9

Q ss_pred             ceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCC-CC
Q 024842           27 RYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFS-HR  105 (262)
Q Consensus        27 ~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~-h~  105 (262)
                      .|.+...++.|+.+.||++...                        ++.+++|............+.+|+.+++.+. +.
T Consensus        15 ~~~~~~~~~g~s~~~v~~~~~~------------------------~~~~vlK~~~~~~~~~~~~~~~E~~~l~~l~~~~   70 (263)
T 3tm0_A           15 KYRCVKDTEGMSPAKVYKLVGE------------------------NENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKL   70 (263)
T ss_dssp             TSEEEECCSCCSSSEEEEEECS------------------------SCEEEEEEECGGGTTSTTCHHHHHHHHHHHTTTS
T ss_pred             cceeEeeccCCCCCeEEEEECC------------------------CCcEEEEeCCcccCCCHHHHHHHHHHHHHHhcCC
Confidence            5888999999999999998743                        2367888765422122245778888888874 56


Q ss_pred             CccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCC------
Q 024842          106 NLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLE------  179 (262)
Q Consensus       106 ~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~------  179 (262)
                      .+++++.+.          ...+..|++|+++.|.++.+.+.         +......++.++..+|..||+..      
T Consensus        71 ~vP~v~~~~----------~~~~~~~lv~e~i~G~~l~~~~~---------~~~~~~~~~~~l~~~l~~LH~~~~~~~~~  131 (263)
T 3tm0_A           71 PVPKVLHFE----------RHDGWSNLLMSEADGVLCSEEYE---------DEQSPEKIIELYAECIRLFHSIDISDCPY  131 (263)
T ss_dssp             CCCCEEEEE----------EETTEEEEEEECCSSEEHHHHCC---------TTTCHHHHHHHHHHHHHHHHHSCCTTCSC
T ss_pred             CCCeEEEEE----------ecCCceEEEEEecCCeehhhccC---------CcccHHHHHHHHHHHHHHHhCCCcccCCC
Confidence            677777665          23567899999999999876421         11223467788999999999810      


Q ss_pred             ---------------------------------------------------CCeeecCCCCCcEEEecCCCCCCceEEee
Q 024842          180 ---------------------------------------------------PPYAHNDVKPGNILITCRKGQPPLAILMD  208 (262)
Q Consensus       180 ---------------------------------------------------~~ivH~dikp~Nill~~~~~~~~~~kl~D  208 (262)
                                                                         ..++|+|++|.||+++.+.    .+.|+|
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~HgDl~~~Nil~~~~~----~~~lID  207 (263)
T 3tm0_A          132 TNSLDSRLAELDYLLNNDLADVDCENWEEDTPFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGK----VSGFID  207 (263)
T ss_dssp             BCCHHHHHHHHHHHHHTTCSCCSGGGGSTTCSSSSHHHHHHHHHHCCCCCCEEEECSSCCTTSEEEETTE----EEEECC
T ss_pred             cchHHHHHHHHHHHHhccccccccccccccccCCCHHHHHHHHHhcCCCCCceEECCCCCcCcEEEECCc----EEEEEE
Confidence                                                               2389999999999997533    456999


Q ss_pred             ccceeec
Q 024842          209 FGSARPA  215 (262)
Q Consensus       209 fg~a~~~  215 (262)
                      |+.+..-
T Consensus       208 we~a~~g  214 (263)
T 3tm0_A          208 LGRSGRA  214 (263)
T ss_dssp             CTTCEEE
T ss_pred             chhcccC
Confidence            9988643

>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}

Probab=99.10  E-value=2.9e-10  Score=94.85  Aligned_cols=147  Identities=14%  Similarity=0.165  Sum_probs=100.4

Q ss_pred             EEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhh--ccc-hHHHHHHHHHHHHhhhCCC--
Q 024842           30 ILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVL--IQN-NEQLEMVREEIRVSSLFSH--  104 (262)
Q Consensus        30 ~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~--~~~-~~~~~~~~~E~~~l~~l~h--  104 (262)
                      -.+.|+.|.++.||+.....                        +.+++|+..  ... ......+.+|..+++.+..  
T Consensus        42 ~~~~l~~G~sn~~y~v~~~~------------------------~~~vlr~~~~p~~~~~~~~~~~~~E~~~l~~L~~~~   97 (359)
T 3dxp_A           42 SVEQFKGGQSNPTFKLVTPG------------------------QTYVMRAKPGPKSKLLPSAHAIEREYRVMDALAGTD   97 (359)
T ss_dssp             EEEECCC-CCSCEEEEECSS------------------------CEEEEECCCC----------CHHHHHHHHHHHTTSS
T ss_pred             eEEEcCCcccceEEEEEECC------------------------ceEEEEeCCCCCCCCCCcHHHHHHHHHHHHHhhcCC
Confidence            46779999999999987532                        356777665  222 1223567789999888863  


Q ss_pred             CCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcC------
Q 024842          105 RNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSL------  178 (262)
Q Consensus       105 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~------  178 (262)
                      ..+++++..+.       .....+..|++|+++.+.++.+..      ...+++.....++.+++..|..||+.      
T Consensus        98 vpvP~~~~~~~-------~~~~~g~~~~vme~v~G~~l~~~~------~~~l~~~~~~~~~~~l~~~La~LH~~~~~~~~  164 (359)
T 3dxp_A           98 VPVAKMYALCE-------DESVIGRAFYIMEFVSGRVLWDQS------LPGMSPAERTAIYDEMNRVIAAMHTVDYQAIG  164 (359)
T ss_dssp             SCCCCEEEEEC-------CTTTTSSCEEEEECCCCBCCCCTT------CTTCCHHHHHHHHHHHHHHHHHHHHSCTTTTT
T ss_pred             CCCCcEEEECC-------CCCccCCeEEEEEecCCeecCCCc------cccCCHHHHHHHHHHHHHHHHHHhCCCchhcc
Confidence            44666665541       111125589999999988775421      12367888888999999999999972      


Q ss_pred             --------------------------------------------------CCCeeecCCCCCcEEEecCCCCCCceEEee
Q 024842          179 --------------------------------------------------EPPYAHNDVKPGNILITCRKGQPPLAILMD  208 (262)
Q Consensus       179 --------------------------------------------------~~~ivH~dikp~Nill~~~~~~~~~~kl~D  208 (262)
                                                                        ...++|||++|+||+++.++.  ..+.|+|
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lvHgD~~~~Nil~~~~~~--~v~~viD  242 (359)
T 3dxp_A          165 LGDYGKPGNYFQRQIERWTKQYKLSETESIPAMDSLMDWLPQHIPQEDADLTSIVHGDYRLDNLMFHPTEP--RVLAVLD  242 (359)
T ss_dssp             CTTSSCCSCHHHHHHHHHHHHHHHHCCSCCHHHHHHHHHGGGCCCSTTSSCCEEECSSCSGGGEEECSSSS--CEEEECC
T ss_pred             ccccCCCCCchHHHHHHHHHHHHhcCCcCChHHHHHHHHHHhcCCCccCCCceEEeCCCCCCcEEEeCCCC--cEEEEEC
Confidence                                                              134899999999999986542  1468999


Q ss_pred             ccceeec
Q 024842          209 FGSARPA  215 (262)
Q Consensus       209 fg~a~~~  215 (262)
                      |+.+..-
T Consensus       243 we~a~~g  249 (359)
T 3dxp_A          243 WELSTLG  249 (359)
T ss_dssp             CTTCEEE
T ss_pred             ccccccC
Confidence            9998743

>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6

Probab=99.04  E-value=2.8e-10  Score=90.33  Aligned_cols=139  Identities=17%  Similarity=0.181  Sum_probs=89.6

Q ss_pred             CceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCCCC
Q 024842           26 NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSHR  105 (262)
Q Consensus        26 ~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~h~  105 (262)
                      ..+.+....+.|..+.||++... +                      +..+++|.....   ....+..|+.+++.+.+.
T Consensus        20 ~~~~~~~~~~gg~~~~v~~~~~~-~----------------------g~~~vlK~~~~~---~~~~~~~E~~~l~~l~~~   73 (264)
T 1nd4_A           20 FGYDWAQQTIGCSDAAVFRLSAQ-G----------------------RPVLFVKTDLSG---ALNELQDEAARLSWLATT   73 (264)
T ss_dssp             TTCEEEECSCTTSSCEEEEEECT-T----------------------SCCEEEEEECSC---TTSCHHHHHHHHHHHHTT
T ss_pred             CCCceEecccCCCCceEEEEecC-C----------------------CCeEEEEeCCcc---cchhhhHHHHHHHHHHhC
Confidence            34666554456667999998643 1                      235677765433   123466788888877543


Q ss_pred             C--ccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCC----
Q 024842          106 N--LLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLE----  179 (262)
Q Consensus       106 ~--i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~----  179 (262)
                      +  +++++...          ...+..+++|+++.+.++.  ..    .   ..   ...++.+++..|..||+..    
T Consensus        74 ~~~vP~~~~~~----------~~~~~~~~v~e~i~G~~l~--~~----~---~~---~~~~~~~l~~~l~~lh~~~~~~~  131 (264)
T 1nd4_A           74 GVPCAAVLDVV----------TEAGRDWLLLGEVPGQDLL--SS----H---LA---PAEKVSIMADAMRRLHTLDPATC  131 (264)
T ss_dssp             TCCBCCEEEEE----------ECSSCEEEEEECCSSEETT--TS----C---CC---HHHHHHHHHHHHHHHTTSCGGGC
T ss_pred             CCCCCeEEEec----------cCCCCCEEEEEecCCcccC--cC----c---CC---HhHHHHHHHHHHHHHhCCCCCCC
Confidence            4  44466544          2235689999999998884  21    1   11   1245666777777777632    


Q ss_pred             ----------------------------------------------------CCeeecCCCCCcEEEecCCCCCCceEEe
Q 024842          180 ----------------------------------------------------PPYAHNDVKPGNILITCRKGQPPLAILM  207 (262)
Q Consensus       180 ----------------------------------------------------~~ivH~dikp~Nill~~~~~~~~~~kl~  207 (262)
                                                                          ..++|+|++|+||+++.++    .+.|+
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~HgDl~~~Nil~~~~~----~~~li  207 (264)
T 1nd4_A          132 PFDHQAKHRIERARTRMEAGLVDQDDLDEEHQGLAPAELFARLKARMPDGEDLVVTHGDACLPNIMVENGR----FSGFI  207 (264)
T ss_dssp             CCBCCHHHHHHHHHHHHHTTCCCTTSCCGGGTTCCHHHHHHHHHHTCCSSCCEEEECSSCCGGGEEEETTE----EEEEC
T ss_pred             CCchHHHHHHHHHHHHHhcCCccchhhhhhccCccHHHHHHHHHHhcCCCCCeEEECCCCCCCcEEEECCc----EEEEE
Confidence                                                                1299999999999997543    45699


Q ss_pred             eccceeecc
Q 024842          208 DFGSARPAQ  216 (262)
Q Consensus       208 Dfg~a~~~~  216 (262)
                      ||+.+....
T Consensus       208 D~~~a~~g~  216 (264)
T 1nd4_A          208 DCGRLGVAD  216 (264)
T ss_dssp             CCTTCEEEE
T ss_pred             cchhcccCC
Confidence            999986543

>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A

Probab=98.77  E-value=1.7e-08  Score=82.18  Aligned_cols=141  Identities=17%  Similarity=0.179  Sum_probs=93.3

Q ss_pred             EEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCC-CCCc--c
Q 024842           32 RQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFS-HRNL--L  108 (262)
Q Consensus        32 ~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~-h~~i--~  108 (262)
                      +.++.|.+..||+..                           ..+++|.....  .....+..|..+++.+. +..+  +
T Consensus        26 ~~~~~G~~n~v~~v~---------------------------~~~vlR~~~~~--~~~~~~~~E~~~l~~l~~~~~v~vP   76 (304)
T 3sg8_A           26 EISGEGNDCIAYEIN---------------------------RDFIFKFPKHS--RGSTNLFNEVNILKRIHNKLPLPIP   76 (304)
T ss_dssp             CEEEECSSEEEEEST---------------------------TSEEEEEESSH--HHHHHHHHHHHHHHHHTTSSSSCCC
T ss_pred             EecCCCCcceEEEEC---------------------------CEEEEEecCCc--chHHHHHHHHHHHHHHHhcCCCCCC
Confidence            458999999999753                           14677765432  34567888999988773 3332  2


Q ss_pred             chhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCC---------
Q 024842          109 PLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLE---------  179 (262)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~---------  179 (262)
                      +++....       ........|++|+++.|.++.+...      ..++.++...++.+++..+..||+..         
T Consensus        77 ~~~~~~~-------~~~~~~~~~~vm~~i~G~~l~~~~~------~~l~~~~~~~~~~~l~~~la~LH~~~~~~~~~~~~  143 (304)
T 3sg8_A           77 EVVFTGM-------PSETYQMSFAGFTKIKGVPLTPLLL------NNLPKQSQNQAAKDLARFLSELHSINISGFKSNLV  143 (304)
T ss_dssp             CEEEECC-------CCSSCSCSCEEEECCCCEECCHHHH------HTSCHHHHHHHHHHHHHHHHHHHHSCCTTSCGGGB
T ss_pred             ceEeecC-------CCCCCCcceEEEcccCCeECCcccc------ccCCHHHHHHHHHHHHHHHHHHHcCCCCCCCccch
Confidence            2322210       1112234688999999988865321      12677777778888888888888511         


Q ss_pred             -----------------------------------------------CCeeecCCCCCcEEEecCCCCCCceEEeeccce
Q 024842          180 -----------------------------------------------PPYAHNDVKPGNILITCRKGQPPLAILMDFGSA  212 (262)
Q Consensus       180 -----------------------------------------------~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a  212 (262)
                                                                     +.++|+|++|.||+++.+.  ...+.|+||+.+
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~--~~~~~~iD~~~~  221 (304)
T 3sg8_A          144 LDFREKINEDNKKIKKLLSRELKGPQMKKVDDFYRDILENEIYFKYYPCLIHNDFSSDHILFDTEK--NTICGIIDFGDA  221 (304)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTCGGGTCCCCEEECSCCCGGGEEEETTT--TEEEEECCCTTC
T ss_pred             hhHHHHHHHHHHHHHHHhcccCCcccHHHHHHHHHHHHhccccccCCceeEeCCCCcccEEEeCCC--CCEEEEEeCCCC
Confidence                                                           2379999999999998641  115789999998


Q ss_pred             eecc
Q 024842          213 RPAQ  216 (262)
Q Consensus       213 ~~~~  216 (262)
                      ..-.
T Consensus       222 ~~~~  225 (304)
T 3sg8_A          222 AISD  225 (304)
T ss_dssp             EEEC
T ss_pred             ccCC
Confidence            7644

>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*

Probab=98.49  E-value=2.4e-06  Score=69.52  Aligned_cols=143  Identities=18%  Similarity=0.298  Sum_probs=85.5

Q ss_pred             EEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCCCC---Cc
Q 024842           31 LRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSHR---NL  107 (262)
Q Consensus        31 ~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~h~---~i  107 (262)
                      .+.++.|....||+.     +                      +.+++|...  .......+..|..+++.+.+.   .+
T Consensus        24 v~~l~~G~~n~v~~v-----g----------------------~~~VlR~~~--~~~~~~~~~~E~~~L~~L~~~~~v~V   74 (306)
T 3tdw_A           24 VESLGEGFRNYAILV-----N----------------------GDWVFRFPK--SQQGADELNKEIQLLPLLVGCVKVNI   74 (306)
T ss_dssp             EEEEEECSSEEEEEE-----T----------------------TTEEEEEES--SHHHHHHHHHHHHHHHHHTTTCSSBC
T ss_pred             eeecCCCcceeEEEE-----C----------------------CEEEEEecC--CchHHHHHHHHHHHHHHHHhcCCCCC
Confidence            455788988899986     1                      146777642  233456788999999988653   23


Q ss_pred             cchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcC---------
Q 024842          108 LPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSL---------  178 (262)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~---------  178 (262)
                      ++++....         ...+..+++|+++.|.++.+..-      ..++......++.++...|..||+.         
T Consensus        75 P~~~~~~~---------~~~g~~~~v~e~i~G~~l~~~~~------~~l~~~~~~~~~~~lg~~La~LH~~~~~~~~~~g  139 (306)
T 3tdw_A           75 PQYVYIGK---------RSDGNPFVGYRKVQGQILGEDGM------AVLPDDAKDRLALQLAEFMNELSAFPVETAISAG  139 (306)
T ss_dssp             CCEEEEEE---------CTTSCEEEEEECCCSEECHHHHH------TTSCHHHHHHHHHHHHHHHHHHHHSCHHHHHHTT
T ss_pred             CCeEeecc---------cCCCceEEEEeccCCeECchhhh------hhCCHHHHHHHHHHHHHHHHHHhcCCcccccccC
Confidence            33333220         12345789999999988765211      0123333333333444443333321         


Q ss_pred             -------------------------------------------------CCCeeecCCCCCcEEEecCCCCCCceEEeec
Q 024842          179 -------------------------------------------------EPPYAHNDVKPGNILITCRKGQPPLAILMDF  209 (262)
Q Consensus       179 -------------------------------------------------~~~ivH~dikp~Nill~~~~~~~~~~kl~Df  209 (262)
                                                                       .+.++|+|++|.||+++.++.......|+||
T Consensus       140 ~p~~~w~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~~~iD~  219 (306)
T 3tdw_A          140 VPVTNLKNKILLLSEAVEDQVFPLLDESLRDYLTLRFQSYMTHPVYTRYTPRLIHGDLSPDHFLTNLNSRQTPLTGIIDF  219 (306)
T ss_dssp             CCBCCHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHCHHHHCCCCEEECSCCSGGGEEECTTCSSCCEEEECCC
T ss_pred             CChHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHhCcccccCCCeeEeCCCCcccEEEecCCCCCceEEEEeh
Confidence                                                             1237999999999999862111114579999


Q ss_pred             cceeeccc
Q 024842          210 GSARPAQS  217 (262)
Q Consensus       210 g~a~~~~~  217 (262)
                      +.+..-.+
T Consensus       220 ~~a~~gd~  227 (306)
T 3tdw_A          220 GDAAISDP  227 (306)
T ss_dssp             TTCEEECG
T ss_pred             hhcCCCCH
Confidence            98865443

>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*

Probab=98.48  E-value=7.1e-07  Score=71.12  Aligned_cols=117  Identities=17%  Similarity=0.133  Sum_probs=76.3

Q ss_pred             ceeehhhhccchHHHHHHHHHHHHhhhCC-CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcC
Q 024842           75 TYAMKKVLIQNNEQLEMVREEIRVSSLFS-HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKK  153 (262)
Q Consensus        75 ~~~ik~~~~~~~~~~~~~~~E~~~l~~l~-h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~  153 (262)
                      .+++|.....   ....+..|...++.+. +--+.+++.+.          ...+..+++|+++.+.++.+....     
T Consensus        52 ~~~lk~~~~~---~~~~~~~E~~~l~~l~~~vPVP~v~~~~----------~~~~~~~lvme~l~G~~~~~~~~~-----  113 (272)
T 4gkh_A           52 ELFLKHGKGS---VANDVTDEMVRLNWLTAFMPLPTIKHFI----------RTPDDAWLLTTAIPGKTAFQVLEE-----  113 (272)
T ss_dssp             CEEEEEEETH---HHHHHHHHHHHHHHHTTTSCCCCEEEEE----------EETTEEEEEEECCCSEEHHHHHHH-----
T ss_pred             EEEEEECCCC---CHhHHHHHHHHHHHhccCCCcCeEEEEE----------EECCeEEEEEEeeCCccccccccC-----
Confidence            5777765433   3456778888887774 22244444443          234678999999999888765431     


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHcCC------------------------------------------------------
Q 024842          154 EFFSTSDVLQIFYQICAGLKHMHSLE------------------------------------------------------  179 (262)
Q Consensus       154 ~~~~~~~~~~i~~ql~~~l~~lH~~~------------------------------------------------------  179 (262)
                         .......+..++...|.-||+..                                                      
T Consensus       114 ---~~~~~~~~~~~l~~~L~~Lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  190 (272)
T 4gkh_A          114 ---YPDSGENIVDALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRMNNGLVDASDFDDERNGWPVEQVWKEMHKLLPFS  190 (272)
T ss_dssp             ---CGGGHHHHHHHHHHHHHHHHTSCGGGCCBBCCHHHHHHHHHHHHHTTCCCGGGCCGGGTTCCHHHHHHHHHTTCCCC
T ss_pred             ---CHHHHHHHHHHHHHHHHHhcCCCcccCCcCcccccchhhHHHHHHHhhhhhhhccccccchHHHHHHHHHHhccccc
Confidence               11223345566666677777530                                                      


Q ss_pred             --CCeeecCCCCCcEEEecCCCCCCceEEeeccceeecc
Q 024842          180 --PPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQ  216 (262)
Q Consensus       180 --~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~  216 (262)
                        +.++|+|++|.||+++.++    .+-|+||+.+..-.
T Consensus       191 ~~~~l~HGDl~~~Nil~~~~~----~~~viDwe~a~~gd  225 (272)
T 4gkh_A          191 PDSVVTHGDFSLDNLIFDEGK----LIGCIDVGRVGIAD  225 (272)
T ss_dssp             CCEEEECSCCCTTSEEEETTE----EEEECCCTTCEEEE
T ss_pred             CCcEEEcCCCCCCeEEEECCe----EEEEEECcccccCC
Confidence              1379999999999997554    45699999986543

>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*

Probab=98.13  E-value=3.9e-06  Score=70.73  Aligned_cols=31  Identities=19%  Similarity=0.242  Sum_probs=25.7

Q ss_pred             CeeecCCCCCcEEEecCCCCCCceEEeeccceeecc
Q 024842          181 PYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQ  216 (262)
Q Consensus       181 ~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~  216 (262)
                      .++|||++|.||+++.++     +.++||..+..-+
T Consensus       228 ~L~HGDl~~~Nil~~~~~-----~~lID~e~a~~G~  258 (397)
T 2olc_A          228 TLIHGDLHTGSIFASEHE-----TKVIDPEFAFYGP  258 (397)
T ss_dssp             EEECSCCSGGGEEECSSC-----EEECCCTTCEEEC
T ss_pred             ceeeCCCCcCcEEEeCCC-----eEEEeCcccccCC
Confidence            499999999999997544     8899998886443

>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*

Probab=98.06  E-value=4.1e-06  Score=69.49  Aligned_cols=31  Identities=16%  Similarity=0.210  Sum_probs=25.1

Q ss_pred             CeeecCCCCCcEEEecCCCCCCceEEeeccceeec
Q 024842          181 PYAHNDVKPGNILITCRKGQPPLAILMDFGSARPA  215 (262)
Q Consensus       181 ~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~  215 (262)
                      .++|+|++|+||+++.+.    .+.|+||+.+..-
T Consensus       223 ~l~HgDl~~~Nil~~~~~----~~~vIDwe~a~~g  253 (357)
T 3ats_A          223 VLLWGDARVGNVLYRDFQ----PVAVLDWEMVALG  253 (357)
T ss_dssp             EEECSSCSGGGEEEETTE----EEEECCGGGCEEE
T ss_pred             eEEeCCCCCCeEEEeCCc----EEEEEcccccccC
Confidence            489999999999998422    4689999988643

>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}

Probab=97.98  E-value=3.3e-05  Score=62.07  Aligned_cols=80  Identities=10%  Similarity=-0.004  Sum_probs=51.2

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCCC
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSH  104 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~h  104 (262)
                      +....-++.+|.|..+.||+.+..                       +++.+++|+...........+..|...|+.+.-
T Consensus        14 G~~v~~v~~~g~G~~~~vyrv~l~-----------------------DG~~~~vK~~~~~~~~~~~~~~~Ea~~L~~L~~   70 (288)
T 3f7w_A           14 GREVAAVAERGHSHRWHLYRVELA-----------------------DGTPLFVKALPDDAPALDGLFRAEALGLDWLGR   70 (288)
T ss_dssp             CCCEEEEEEEEEETTEEEEEEEET-----------------------TSCEEEEEECCTTCCCCTTHHHHHHHHHHHHTC
T ss_pred             CCCeEEEEecCCCCCeEEEEEEEC-----------------------CCCEEEEEEeCCCCcchhhHHHHHHHHHHHHHh
Confidence            345566888999999999998854                       344678887654433333457788888887742


Q ss_pred             C---CccchhhhhHHHhhhccCCCCcceeEEEEeecCCCc
Q 024842          105 R---NLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGT  141 (262)
Q Consensus       105 ~---~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  141 (262)
                      .   -+++++.              .+..+++||+..+..
T Consensus        71 ~~~vpvP~v~~--------------~~~~~lv~e~l~~~~   96 (288)
T 3f7w_A           71 SFGSPVPQVAG--------------WDDRTLAMEWVDERP   96 (288)
T ss_dssp             STTCCSCCEEE--------------EETTEEEEECCCCCC
T ss_pred             hCCCCcceEEe--------------ccCceEEEEeecccC
Confidence            2   2233332              133578888876543

>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}

Probab=97.94  E-value=7.3e-05  Score=61.31  Aligned_cols=31  Identities=19%  Similarity=0.293  Sum_probs=26.0

Q ss_pred             CeeecCCCCCcEEEecCCCCCCceEEeeccceeec
Q 024842          181 PYAHNDVKPGNILITCRKGQPPLAILMDFGSARPA  215 (262)
Q Consensus       181 ~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~  215 (262)
                      .++|||++|.||+++.++    .+.|+||+.+..-
T Consensus       223 ~l~HgD~~~~Nil~~~~~----~~~lIDfe~a~~g  253 (346)
T 2q83_A          223 NLCHQDYGTGNTLLGENE----QIWVIDLDTVSFD  253 (346)
T ss_dssp             CEECSSCSTTSEEECGGG----CEEECCCTTCEEC
T ss_pred             ceecCCCCcccEEEeCCC----cEEEEehhhcccC
Confidence            499999999999997554    5899999988643

>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}

Probab=97.25  E-value=0.0022  Score=51.98  Aligned_cols=76  Identities=16%  Similarity=0.128  Sum_probs=51.8

Q ss_pred             EEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCC---CCC
Q 024842           30 ILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFS---HRN  106 (262)
Q Consensus        30 ~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~---h~~  106 (262)
                      -.+.|+.|.+..+|+....                        ++.+++|.....   ....+..|...++.+.   ...
T Consensus        40 ~~~~l~gG~~n~~y~v~~~------------------------~~~~vlK~~~~~---~~~~~~~E~~~L~~L~~~~~v~   92 (312)
T 3jr1_A           40 HKEKLYSGEMNEIWLINDE------------------------VQTVFVKINERS---YRSMFRAEADQLALLAKTNSIN   92 (312)
T ss_dssp             EEEEECCSSSSEEEEEESS------------------------SCEEEEEEEEGG---GHHHHHHHHHHHHHHHHTTSSB
T ss_pred             eeEEeCCccceeeeEEEEC------------------------CCeEEEEeCCcc---cHHHHHHHHHHHHHHHhhCCCC
Confidence            3677899999999998742                        236777765433   2456778888887763   245


Q ss_pred             ccchhhhhHHHhhhccCCCCcceeEEEEeecCCCch
Q 024842          107 LLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTL  142 (262)
Q Consensus       107 i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L  142 (262)
                      +++++...          ...+..+++|+++.+.++
T Consensus        93 VP~vl~~~----------~~~g~~~lvme~l~G~~~  118 (312)
T 3jr1_A           93 VPLVYGIG----------NSQGHSFLLLEALNKSKN  118 (312)
T ss_dssp             CCCEEEEE----------ECSSEEEEEEECCCCCCC
T ss_pred             cceEEEEe----------ecCCceEEEEEeccCCCC
Confidence            55665543          224678999999988654

>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti}

Probab=97.09  E-value=0.0015  Score=52.67  Aligned_cols=31  Identities=19%  Similarity=0.120  Sum_probs=24.3

Q ss_pred             CeeecCCCCCcEEEecCCCCCCceEEeeccceeecc
Q 024842          181 PYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQ  216 (262)
Q Consensus       181 ~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~  216 (262)
                      .++|+|+.|.||+.+ ++    .+.|+||..+..-.
T Consensus       174 ~l~HgDl~~~Nil~~-~~----~~~lID~e~a~~g~  204 (301)
T 3dxq_A          174 AACHCDPLCENFLDT-GE----RMWIVDWEYSGMND  204 (301)
T ss_dssp             EEECSCCCGGGEEEC-SS----CEEECCCTTCEEEC
T ss_pred             eeeccCCCcCCEEEC-CC----CEEEEecccccCCC
Confidence            489999999999943 33    47999999886433

>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}

Probab=95.91  E-value=0.0083  Score=50.72  Aligned_cols=31  Identities=16%  Similarity=0.269  Sum_probs=26.0

Q ss_pred             CeeecCCCCCcEEEecCCCCCCceEEeeccceeecc
Q 024842          181 PYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQ  216 (262)
Q Consensus       181 ~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~  216 (262)
                      .++|||++|.|||++.++     +.|+||+.+..-.
T Consensus       233 ~liHGDl~~~Nil~~~~~-----~~lID~e~a~~G~  263 (420)
T 2pyw_A          233 ALIHGDLHTGSVMVTQDS-----TQVIDPEFSFYGP  263 (420)
T ss_dssp             EEECSCCSGGGEEECSSC-----EEECCCTTCEEEC
T ss_pred             eEEecCCCCCcEEEeCCC-----CEEEeCcccccCc
Confidence            399999999999997554     8999999887543

>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}

Probab=94.02  E-value=0.034  Score=45.18  Aligned_cols=36  Identities=19%  Similarity=0.293  Sum_probs=26.9

Q ss_pred             CeeecCCCCCcEEEecCCCCCCceEEeeccceeecc
Q 024842          181 PYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQ  216 (262)
Q Consensus       181 ~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~  216 (262)
                      .++|||+++.||+++.+......+.|+||+.+..-.
T Consensus       184 ~lvHgD~~~~Nil~~~~~~~~~~~~lIDf~~a~~G~  219 (333)
T 3csv_A          184 VFVHRDFHAQNLLWLPEREGLARVGVIDFQDAKLGH  219 (333)
T ss_dssp             EEECSCCSGGGEEECTTSCGGGGEEECCCTTCEEEC
T ss_pred             eeEeCCcCcccEEeccCcCCCCCeEEEeCCCcCcCC
Confidence            499999999999997541111258999999987544

>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6

Probab=94.01  E-value=0.021  Score=46.20  Aligned_cols=30  Identities=27%  Similarity=0.269  Sum_probs=24.7

Q ss_pred             CeeecCCCCCcEEEecCCCCCCceEEeeccceee
Q 024842          181 PYAHNDVKPGNILITCRKGQPPLAILMDFGSARP  214 (262)
Q Consensus       181 ~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~  214 (262)
                      .++|+|++++||+++.++    .+.|+||+.+..
T Consensus       188 ~liHgDl~~~Nil~~~~~----~~~lIDf~~a~~  217 (322)
T 2ppq_A          188 GVIHADLFQDNVFFLGDE----LSGLIDFYFACN  217 (322)
T ss_dssp             EEECSCCCGGGEEEETTE----EEEECCCTTCEE
T ss_pred             ccCCCCCCccCEEEeCCc----eEEEecchhccC
Confidence            489999999999997654    357999998764

>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural genomics, structural genomics consortium; 2.20A {Plasmodium knowlesi} PDB: 3fi8_A*

Probab=93.44  E-value=0.034  Score=45.99  Aligned_cols=29  Identities=31%  Similarity=0.439  Sum_probs=23.9

Q ss_pred             CeeecCCCCCcEEEecCCCCCCceEEeeccceee
Q 024842          181 PYAHNDVKPGNILITCRKGQPPLAILMDFGSARP  214 (262)
Q Consensus       181 ~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~  214 (262)
                      .++|+|+++.|||++.+.     +.|+||..+..
T Consensus       213 ~l~HgDl~~~Nil~~~~~-----~~lID~e~a~~  241 (369)
T 3c5i_A          213 VFCHNDLQENNIINTNKC-----LRLIDFEYSGF  241 (369)
T ss_dssp             EEECSCCCGGGEEECC-C-----EEECCCTTCEE
T ss_pred             EEEeCCCCcccEEecCCc-----EEEEEecCCCC
Confidence            489999999999996433     88999998763

>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6

Probab=93.42  E-value=0.08  Score=42.77  Aligned_cols=29  Identities=31%  Similarity=0.447  Sum_probs=24.3

Q ss_pred             CeeecCCCCCcEEEecCCCCCCceEEeeccceeec
Q 024842          181 PYAHNDVKPGNILITCRKGQPPLAILMDFGSARPA  215 (262)
Q Consensus       181 ~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~  215 (262)
                      .++|||++|.||+++ +     .+.|+||+.+..-
T Consensus       196 ~l~HgD~~~~Nil~~-~-----~~~lIDfe~a~~g  224 (328)
T 1zyl_A          196 LRLHGDCHAGNILWR-D-----GPMFVDLDDARNG  224 (328)
T ss_dssp             EECCSSCSGGGEEES-S-----SEEECCCTTCCEE
T ss_pred             eeeeCCCCcccEeEc-C-----CCEEEECCCCCcC
Confidence            489999999999997 2     3899999887644

>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* 3q2m_A*

Probab=93.04  E-value=0.097  Score=42.75  Aligned_cols=32  Identities=22%  Similarity=0.443  Sum_probs=26.7

Q ss_pred             CeeecCCCCCcEEEecCCCCCCceEEeeccceeecc
Q 024842          181 PYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQ  216 (262)
Q Consensus       181 ~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~  216 (262)
                      .++|+|+.|.||+++.++    .+.|+||+.+..-.
T Consensus       207 ~~~HgD~~~~N~l~~~~~----~~~~iD~e~~~~~~  238 (339)
T 3i1a_A          207 VLCHSDIHAGNVLVGNEE----SIYIIDWDEPMLAP  238 (339)
T ss_dssp             EEECSCCCGGGEEECGGG----CEEECCCSSCEEEC
T ss_pred             eeEeCCCCcCCEEEeCCC----eEEEEECCCCeeCC
Confidence            489999999999998654    48999998876544

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=92.90  E-value=0.013  Score=47.15  Aligned_cols=42  Identities=14%  Similarity=0.161  Sum_probs=32.8

Q ss_pred             ccccCccCcccCCcccchhhhhhhhhhhhhcCcccchheehe
Q 024842          215 AQSKFALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMR  256 (262)
Q Consensus       215 ~~~~~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~  256 (262)
                      +-+|+......|+.+.|+||+|++++|+++.|..++.+....
T Consensus       196 ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~~~  237 (299)
T 4asz_A          196 WMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNN  237 (299)
T ss_dssp             GCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHH
T ss_pred             hcCHHHHcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCHH
Confidence            344555566679999999999999999999878777765443

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=92.50  E-value=0.016  Score=46.89  Aligned_cols=42  Identities=17%  Similarity=0.055  Sum_probs=32.6

Q ss_pred             ccccCccCcccCCcccchhhhhhhhhhhhhcCcccchheehe
Q 024842          215 AQSKFALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMR  256 (262)
Q Consensus       215 ~~~~~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~  256 (262)
                      +-.|+......|+.+.|+||+|++++|+++.|..++.|....
T Consensus       213 ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~~~  254 (308)
T 4gt4_A          213 WMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSNQ  254 (308)
T ss_dssp             GCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCCHH
T ss_pred             ccCHHHHhCCCCCccchhhhHHHHHHHHHhCCCCCCCCCCHH
Confidence            344555556679999999999999999999887777665443

>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics consortium, transferase; 2.41A {Plasmodium vivax}

Probab=92.06  E-value=0.14  Score=43.73  Aligned_cols=75  Identities=12%  Similarity=0.089  Sum_probs=39.8

Q ss_pred             EEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCCCCCc-cc
Q 024842           31 LRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSHRNL-LP  109 (262)
Q Consensus        31 ~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~h~~i-~~  109 (262)
                      .+.|+.|-...+|++.....+                      ..+++|+........ -....|..+++.+...++ ++
T Consensus       113 i~~lsgG~tN~~y~v~~~~~~----------------------~~~vLRi~g~~~~~~-idR~~E~~vl~~L~~~gl~P~  169 (458)
T 2qg7_A          113 FQIINGGITNILIKVKDMSKQ----------------------AKYLIRLYGPKTDEI-INREREKKISCILYNKNIAKK  169 (458)
T ss_dssp             EEEECC--CEEEEEEEETTTT----------------------EEEEEEEECC-CCSC-SCHHHHHHHHHHHTTSSSBCC
T ss_pred             EEEcCCCeEeEEEEEEECCCC----------------------ceEEEEECCCChhhh-cCHHHHHHHHHHHHhcCCCCC
Confidence            567888999999998764311                      245565543211110 012467778877764444 34


Q ss_pred             hhhhhHHHhhhccCCCCcceeEEEEeecCCCch
Q 024842          110 LLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTL  142 (262)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L  142 (262)
                      ++..+          . .   ..+|+|+.+.++
T Consensus       170 ll~~~----------~-~---G~v~e~I~G~~l  188 (458)
T 2qg7_A          170 IYVFF----------T-N---GRIEEFMDGYAL  188 (458)
T ss_dssp             EEEEE----------T-T---EEEEECCCSEEC
T ss_pred             EEEEe----------C-C---eEEEEeeCCccC
Confidence            45443          1 1   248888876443

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=91.99  E-value=0.026  Score=46.05  Aligned_cols=41  Identities=15%  Similarity=0.141  Sum_probs=32.4

Q ss_pred             ccccCccCcccCCcccchhhhhhhhhhhhhcCcccchheeh
Q 024842          215 AQSKFALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILM  255 (262)
Q Consensus       215 ~~~~~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~  255 (262)
                      +-+|+......|+.+.|+||+|++++|+++.|..++.+...
T Consensus       226 ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~~  266 (329)
T 4aoj_A          226 WMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSN  266 (329)
T ss_dssp             GCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSCH
T ss_pred             ccChhhhcCCCCCccccccchHHHHHHHHcCCCCCCCCCCH
Confidence            44555566778999999999999999999977777766543

>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase, structural genomics CONS SGC, hemicholinium-3, phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens} PDB: 3lq3_A* 2ig7_A*

Probab=91.95  E-value=0.084  Score=43.93  Aligned_cols=35  Identities=29%  Similarity=0.505  Sum_probs=26.5

Q ss_pred             CeeecCCCCCcEEEecCCCCCCceEEeeccceeec
Q 024842          181 PYAHNDVKPGNILITCRKGQPPLAILMDFGSARPA  215 (262)
Q Consensus       181 ~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~  215 (262)
                      .++|+|+.++||+++.+......+.|+||..|..-
T Consensus       221 ~~~H~D~~~~Nil~~~~~~~~~~~~~IDwE~a~~~  255 (379)
T 3feg_A          221 VFCHNDIQEGNILLLSEPENADSLMLVDFEYSSYN  255 (379)
T ss_dssp             EEECSCCCGGGEEEESCC---CCEEECCCTTCEEE
T ss_pred             EEEcCCCCCCeEEEcCCCCccCcEEEEecccCCcC
Confidence            48999999999999865211226899999988743

>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8

Probab=91.94  E-value=0.064  Score=45.46  Aligned_cols=82  Identities=12%  Similarity=0.057  Sum_probs=44.1

Q ss_pred             EEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCCCCCc-c
Q 024842           30 ILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSHRNL-L  108 (262)
Q Consensus        30 ~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~h~~i-~  108 (262)
                      -.+.|+.|....+|++.........               ...++.+++|+......  ...+..|..+++.+...++ +
T Consensus        77 ~v~~l~gG~tN~~y~v~~~~~~~~~---------------~~~~~~~vlRi~~~~~~--~~~li~E~~~l~~L~~~g~~P  139 (429)
T 1nw1_A           77 RISRIKGGMSNMLFLCRLSEVYPPI---------------RNEPNKVLLRVYFNPET--ESHLVAESVIFTLLSERHLGP  139 (429)
T ss_dssp             EEEEECCCTTEEEEEEEECTTSCCS---------------SSCCSEEEEEEECSCCC--HHHHHHHHHHHHHHHHTTSSS
T ss_pred             EEEEeCCCcccceEEEEeCCCcccc---------------CCCCceEEEEEeCCCCc--HHHHHHHHHHHHHHHhCCCCC
Confidence            3567888999999998764311000               00123577776633211  1334468877777643333 4


Q ss_pred             chhhhhHHHhhhccCCCCcceeEEEEeecCCCch
Q 024842          109 PLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTL  142 (262)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L  142 (262)
                      ++++.+            .+  .++++|+.+.++
T Consensus       140 ~l~~~~------------~~--g~v~e~l~G~~l  159 (429)
T 1nw1_A          140 KLYGIF------------SG--GRLEEYIPSRPL  159 (429)
T ss_dssp             CEEEEE------------TT--EEEECCCCEEEC
T ss_pred             cEEEEe------------CC--CEEEEEeCCccc
Confidence            444433            11  277888765433

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=91.62  E-value=0.03  Score=46.19  Aligned_cols=40  Identities=18%  Similarity=0.142  Sum_probs=32.4

Q ss_pred             ccccCccCcccCCcccchhhhhhhhhhhhhcCcccchhee
Q 024842          215 AQSKFALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQIL  254 (262)
Q Consensus       215 ~~~~~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~  254 (262)
                      +-.|+......|+.+.|+||+|++++|+++.|..++.|.-
T Consensus       253 ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~~~~  292 (353)
T 4ase_A          253 WMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVK  292 (353)
T ss_dssp             GCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCC
T ss_pred             ccCHHHHhcCCCCCcccEeehHHHHHHHHhCCCCCCCCCC
Confidence            4455556667899999999999999999998787777653

>3g15_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics CONS SGC, hemicholinium-3, transferase; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*

Probab=89.89  E-value=0.16  Score=42.45  Aligned_cols=34  Identities=29%  Similarity=0.522  Sum_probs=25.5

Q ss_pred             eeecCCCCCcEEEecCC--CCCCceEEeeccceeec
Q 024842          182 YAHNDVKPGNILITCRK--GQPPLAILMDFGSARPA  215 (262)
Q Consensus       182 ivH~dikp~Nill~~~~--~~~~~~kl~Dfg~a~~~  215 (262)
                      ++|+|+.+.||++..+.  .....+.++||..|..-
T Consensus       246 fcHnDl~~gNil~~~~~~~~~~~~l~vIDwEya~~n  281 (401)
T 3g15_A          246 FCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSSYN  281 (401)
T ss_dssp             EECSCCCGGGEEEETTGGGCSSCCEEECCCTTCEEE
T ss_pred             eEEecCCCCeEEEecCcccCcCCeEEEechHhccCC
Confidence            58999999999995321  12236999999998743

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=88.53  E-value=0.09  Score=43.15  Aligned_cols=38  Identities=11%  Similarity=0.103  Sum_probs=28.7

Q ss_pred             ccccCccCcccCCcccchhhhhhhhhhhhhcCcccchhe
Q 024842          215 AQSKFALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQI  253 (262)
Q Consensus       215 ~~~~~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~  253 (262)
                      +-.++......|+.+.|+||+|++++||++ |..++.|.
T Consensus       236 YmAPEvl~~~~y~~~~DiWSlGvilyeml~-G~~PF~~~  273 (346)
T 4fih_A          236 WMAPELISRLPYGPEVDIWSLGIMVIEMVD-GEPPYFNE  273 (346)
T ss_dssp             GCCHHHHTTCCBCTHHHHHHHHHHHHHHHH-SSCTTTTS
T ss_pred             cCCHHHHCCCCCCcHHHHHHHHHHHHHHHH-CCCCCCCc
Confidence            334555666789999999999999999998 45555443

>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*

Probab=87.94  E-value=0.08  Score=42.61  Aligned_cols=38  Identities=16%  Similarity=0.114  Sum_probs=28.5

Q ss_pred             ccccCccCcccCCcccchhhhhhhhhhhhhcCcccchhe
Q 024842          215 AQSKFALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQI  253 (262)
Q Consensus       215 ~~~~~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~  253 (262)
                      +-+|+......|+.+.|+||+|++++++++ |..++.|.
T Consensus       192 YmAPE~~~~~~y~~~~DiwSlGvilyemlt-G~~PF~~~  229 (304)
T 3ubd_A          192 YMAPEVVNRRGHTQSADWWSFGVLMFEMLT-GTLPFQGK  229 (304)
T ss_dssp             GCCHHHHHTSCCCTHHHHHHHHHHHHHHHH-SSCSSCCS
T ss_pred             cCCHHHhccCCCCCCCcccchHHHHHHHHh-CCCCCCCc
Confidence            334445556678999999999999999998 55555554

>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*

Probab=87.81  E-value=0.12  Score=42.56  Aligned_cols=30  Identities=13%  Similarity=-0.113  Sum_probs=24.0

Q ss_pred             ccCcccCCcccchhhhhhhhhhhhhcCccc
Q 024842          220 ALGQRRYSCRNGLLSIVLHLSELLSCGTVR  249 (262)
Q Consensus       220 ~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~  249 (262)
                      ..+.+.|+.+.|+||+||+++++++....|
T Consensus       218 l~~~~~y~~~~DiWSlG~il~ell~G~~Pf  247 (361)
T 4f9c_A          218 LTKCPNQTTAIDMWSAGVIFLSLLSGRYPF  247 (361)
T ss_dssp             HTTCSCCCTHHHHHHHHHHHHHHHHTCSSS
T ss_pred             HcCCCCCCCccchhhhHHHHHHHHHCCCCC
Confidence            346667899999999999999999843333

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=87.62  E-value=0.13  Score=41.93  Aligned_cols=37  Identities=11%  Similarity=0.060  Sum_probs=27.3

Q ss_pred             cccCccCcccCCcccchhhhhhhhhhhhhcCcccchhe
Q 024842          216 QSKFALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQI  253 (262)
Q Consensus       216 ~~~~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~  253 (262)
                      -.|+......|+.+.|+||+|++++++++ |..++.+.
T Consensus       223 mAPE~~~~~~y~~~~DiwSlGvilyemlt-G~~Pf~~~  259 (336)
T 4g3f_A          223 MAPEVVMGKPCDAKVDIWSSCCMMLHMLN-GCHPWTQY  259 (336)
T ss_dssp             CCHHHHTTCCCCTHHHHHHHHHHHHHHHH-SSCSSTTT
T ss_pred             cCHHHHCCCCCCcHHHHHHHHHHHHHHHH-CcCCCCCC
Confidence            34444555678999999999999999998 45554443

>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*

Probab=87.45  E-value=0.09  Score=43.21  Aligned_cols=36  Identities=14%  Similarity=0.025  Sum_probs=27.1

Q ss_pred             ccCccCcccCCcccchhhhhhhhhhhhhcCcccchhe
Q 024842          217 SKFALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQI  253 (262)
Q Consensus       217 ~~~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~  253 (262)
                      .++......|+.+.|+||+|++++++++ |..++.|.
T Consensus       193 APE~l~~~~y~~~~DiwSlGvilyemlt-G~~PF~~~  228 (350)
T 4b9d_A          193 SPEICENKPYNNKSDIWALGCVLYELCT-LKHAFEAG  228 (350)
T ss_dssp             CHHHHTTCCCCHHHHHHHHHHHHHHHHH-SSCSCCCS
T ss_pred             CHHHHCCCCCCcHHHHHHHHHHHHHHHH-CCCCCCCc
Confidence            4445556678999999999999999998 45554443

>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}

Probab=86.92  E-value=0.11  Score=43.54  Aligned_cols=32  Identities=19%  Similarity=0.133  Sum_probs=24.8

Q ss_pred             ccCcccCCcccchhhhhhhhhhhhhcCcccchh
Q 024842          220 ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQ  252 (262)
Q Consensus       220 ~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g  252 (262)
                      ..+...|+.+.|+||+||+++||++. ..++.|
T Consensus       234 ~~~~~~~~~~~DiWSlG~il~ell~G-~~pF~g  265 (398)
T 4b99_A          234 MLSLHEYTQAIDLWSVGCIFGEMLAR-RQLFPG  265 (398)
T ss_dssp             HTTCSCCCTHHHHHHHHHHHHHHHHT-SCSSCC
T ss_pred             hcCCCCCCChhheehhHHHHHHHHHC-CCCCCC
Confidence            35556778899999999999999984 444444

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=86.48  E-value=0.14  Score=43.29  Aligned_cols=37  Identities=11%  Similarity=0.138  Sum_probs=28.3

Q ss_pred             cccCccCcccCCcccchhhhhhhhhhhhhcCcccchhe
Q 024842          216 QSKFALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQI  253 (262)
Q Consensus       216 ~~~~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~  253 (262)
                      -.++......|+.+.|+||+|++++||++ |..++.|.
T Consensus       314 mAPEvl~~~~y~~~~DiWSlGvilyeml~-G~~PF~~~  350 (423)
T 4fie_A          314 MAPELISRLPYGPEVDIWSLGIMVIEMVD-GEPPYFNE  350 (423)
T ss_dssp             CCHHHHTTCCBCTHHHHHHHHHHHHHHHH-SSCTTTTS
T ss_pred             CCHHHHCCCCCCcHHHHHHHHHHHHHHHH-CCCCCCCc
Confidence            34455666789999999999999999998 45555443

>3mes_A Choline kinase; malaria, structural genomics, structural genomics consortium, SGC, transferase; HET: ADP DME PT3; 2.35A {Cryptosporidium parvum}

Probab=86.41  E-value=0.33  Score=40.98  Aligned_cols=30  Identities=23%  Similarity=0.441  Sum_probs=24.4

Q ss_pred             CeeecCCCCCcEEEecCCCCCCceEEeeccceeec
Q 024842          181 PYAHNDVKPGNILITCRKGQPPLAILMDFGSARPA  215 (262)
Q Consensus       181 ~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~  215 (262)
                      .++|+|+.++||+ +.++    .+.|+||..|..-
T Consensus       263 ~~~H~D~~~~N~l-~~~~----~~~~IDwe~a~~~  292 (424)
T 3mes_A          263 VFAHNDLQENNLL-QTQN----NIRMIDYEYSAIN  292 (424)
T ss_dssp             EEECSCCCGGGEE-ECSS----CEEECCCTTCEEE
T ss_pred             eEECCCCCcccee-cCCC----cEEEEecccCCcC
Confidence            4899999999999 4443    5899999998743

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=84.72  E-value=0.38  Score=38.32  Aligned_cols=25  Identities=8%  Similarity=0.163  Sum_probs=21.1

Q ss_pred             cCCcccchhhhhhhhhhhhhcCcccc
Q 024842          225 RYSCRNGLLSIVLHLSELLSCGTVRV  250 (262)
Q Consensus       225 ~~~~~~d~~s~g~~~~e~~~~~~v~~  250 (262)
                      .|+.+.|+||+|++++++++. ..++
T Consensus       205 ~y~~~~DiwSlGvilyelltg-~~Pf  229 (290)
T 3fpq_A          205 KYDESVDVYAFGMCMLEMATS-EYPY  229 (290)
T ss_dssp             CCCTHHHHHHHHHHHHHHHHS-SCTT
T ss_pred             CCCcHHHHHHHHHHHHHHHHC-CCCC
Confidence            589999999999999999985 4444

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=84.44  E-value=0.32  Score=39.10  Aligned_cols=29  Identities=21%  Similarity=0.342  Sum_probs=23.5

Q ss_pred             cccCCcccchhhhhhhhhhhhhcCcccchh
Q 024842          223 QRRYSCRNGLLSIVLHLSELLSCGTVRVIQ  252 (262)
Q Consensus       223 ~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g  252 (262)
                      ...|+.+.|+||+|++++|+++ |..++.+
T Consensus       211 ~~~y~~ksDVwS~Gvvl~Ellt-g~~Pf~~  239 (307)
T 3omv_A          211 NNPFSFQSDVYSYGIVLYELMT-GELPYSH  239 (307)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHHH-SSCTTTT
T ss_pred             CCCCCcHHHhHhHHHHHHHHHH-CCCCCCC
Confidence            3468889999999999999998 5555544

>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...

Probab=83.91  E-value=0.13  Score=41.62  Aligned_cols=37  Identities=14%  Similarity=0.032  Sum_probs=27.2

Q ss_pred             cccCccCcccCCcccchhhhhhhhhhhhhcCcccchhe
Q 024842          216 QSKFALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQI  253 (262)
Q Consensus       216 ~~~~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~  253 (262)
                      -+++......|+.+.|+||+|+++++|++ |..++.|-
T Consensus       201 mAPEvl~~~~y~~~~DiWSlGvilyeml~-G~~PF~~~  237 (311)
T 4aw0_A          201 VSPELLTEKSACKSSDLWALGCIIYQLVA-GLPPFRAG  237 (311)
T ss_dssp             CCHHHHHHSCBCHHHHHHHHHHHHHHHHH-SSCSSCCS
T ss_pred             CCHHHHcCCCCCcHHHHHHHHHHHHHHHh-CCCCCCCC
Confidence            34445555678899999999999999998 45554443

>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A

Probab=82.99  E-value=0.29  Score=38.74  Aligned_cols=35  Identities=11%  Similarity=0.041  Sum_probs=24.0

Q ss_pred             ccCccCcccC-CcccchhhhhhhhhhhhhcCcccchh
Q 024842          217 SKFALGQRRY-SCRNGLLSIVLHLSELLSCGTVRVIQ  252 (262)
Q Consensus       217 ~~~~~~~~~~-~~~~d~~s~g~~~~e~~~~~~v~~~g  252 (262)
                      +|+......| ..+.|+||+|++++++++. ..++.+
T Consensus       179 APE~~~~~~y~~~~~DiwSlGvily~lltg-~~PF~~  214 (275)
T 3hyh_A          179 APEVISGKLYAGPEVDVWSCGVILYVMLCR-RLPFDD  214 (275)
T ss_dssp             CHHHHSSSSCCCTHHHHHHHHHHHHHHHHS-SCSSCC
T ss_pred             ChhhhcCCCCCCChhhhHHHHHHHHHHHHC-CCCCCC
Confidence            3444444444 5689999999999999984 444433

>2yle_A Protein spire homolog 1; actin-binding protein, actin polymerization; 1.80A {Homo sapiens} PDB: 2ylf_A 3r7g_A 3rbw_A

Probab=81.09  E-value=5.8  Score=30.14  Aligned_cols=55  Identities=13%  Similarity=0.156  Sum_probs=39.8

Q ss_pred             CCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHc-CCCCeeecCCCCCcEEEecCC
Q 024842          139 DGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHS-LEPPYAHNDVKPGNILITCRK  198 (262)
Q Consensus       139 ~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~-~~~~ivH~dikp~Nill~~~~  198 (262)
                      .-+|.+++..   .+.+++++++|.++.|.+.+|.-+-. ..  -..+=+.|..|++..+|
T Consensus        32 ~vSL~eIL~~---~~~PlsEEqaWALc~Qc~~~L~~~~~~~~--~~~~i~~~~~i~l~~dG   87 (229)
T 2yle_A           32 ALSLEEILRL---YNQPINEEQAWAVCYQCCGSLRAAARRRQ--PRHRVRSAAQIRVWRDG   87 (229)
T ss_dssp             EEEHHHHHHH---HTSCCCHHHHHHHHHHHHHHHHHHHHTTC--CCCCCCSGGGEEEETTS
T ss_pred             cccHHHHHHH---cCCCcCHHHHHHHHHHHHHHHHhhhhccc--CCceecCCcceEEecCC
Confidence            3577787764   56779999999999999999887621 11  11233457889998888

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A

Probab=81.05  E-value=0.14  Score=40.53  Aligned_cols=19  Identities=21%  Similarity=0.277  Sum_probs=16.9

Q ss_pred             hcCcccchheeheecccCC
Q 024842          244 SCGTVRVIQILMRELMFGR  262 (262)
Q Consensus       244 ~~~~v~~~g~~~~~l~~G~  262 (262)
                      ...|+||+|+++|+|++|+
T Consensus       181 ~~~Di~slG~il~elltg~  199 (286)
T 3uqc_A          181 PQDDIRGIGASLYALLVNR  199 (286)
T ss_dssp             HHHHHHHHHHHHHHHHHSE
T ss_pred             chhHHHHHHHHHHHHHHCC
Confidence            3579999999999999985

>4ano_A ESSB; membrane protein, membrane secretion, ESS type V secretion S; HET: MSE; 1.70A {Geobacillus thermodenitrificans ng80-2organism_taxid}

Probab=80.92  E-value=3.6  Score=31.16  Aligned_cols=51  Identities=12%  Similarity=0.124  Sum_probs=41.7

Q ss_pred             CCHHHHHHHHHHHHHHHH-HHHcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceee
Q 024842          156 FSTSDVLQIFYQICAGLK-HMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARP  214 (262)
Q Consensus       156 ~~~~~~~~i~~ql~~~l~-~lH~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~  214 (262)
                      .+....++++.+|+.... ++++    -+|--++|+||+++.++    .+++.-.|.-..
T Consensus        82 ~~~~eKlrll~nl~~L~~~~~~~----r~tf~l~P~NL~f~~~~----~p~i~hRGi~~~  133 (219)
T 4ano_A           82 TTLLSRIRAAIHLVSKVKHHSAR----RLIFIVCPENLMFNRAL----EPFFLHVGVKES  133 (219)
T ss_dssp             SCHHHHHHHHHHHHHHHSSCCSS----SEECCCCGGGEEECTTC----CEEESCCEETTT
T ss_pred             cCHHHHHHHHHHHHHHHHHhhhC----ceeEEEeCceEEEeCCC----cEEEEEcCCccc
Confidence            788999999999888766 5543    68889999999998777    699998887443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	262
d1koaa2	350	d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C	3e-26
d2jfla1	288	d.144.1.7 (A:21-308) STE20-like serine/threonine-p	3e-25
d1u5ra_	309	d.144.1.7 (A:) Serine/threonine protein kinase TAO	6e-25
d1s9ja_	322	d.144.1.7 (A:) Dual specificity mitogen-activated	4e-23
d1koba_	352	d.144.1.7 (A:) Twitchin, kinase domain {California	2e-22
d1byga_	262	d.144.1.7 (A:) Carboxyl-terminal src kinase (csk)	3e-22
d1uwha_	276	d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens)	1e-21
d1yhwa1	293	d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [	3e-21
d2j4za1	263	d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur	4e-21
d1t4ha_	270	d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa	4e-21
d1tkia_	321	d.144.1.7 (A:) Titin, kinase domain {Human (Homo s	4e-21
d2java1	269	d.144.1.7 (A:3-271) Serine/threonine-protein kinas	1e-20
d1nvra_	271	d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {	2e-20
d1qpca_	272	d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom	2e-20
d3bqca1	328	d.144.1.7 (A:3-330) Protein kinase CK2, alpha subu	3e-20
d3blha1	318	d.144.1.7 (A:8-325) Cell division protein kinase 9	3e-20
d1pmea_	345	d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien	8e-20
d1opja_	287	d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou	1e-19
d1uu3a_	288	d.144.1.7 (A:) 3-phosphoinositide dependent protei	1e-19
d1u46a_	273	d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum	2e-19
d1o6la_	337	d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sap	5e-19
d1rdqe_	350	d.144.1.7 (E:) cAMP-dependent PK, catalytic subuni	5e-19
d1phka_	277	d.144.1.7 (A:) gamma-subunit of glycogen phosphory	7e-19
d1q5ka_	350	d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs	1e-18
d1ckia_	299	d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n	1e-18
d1rjba_	325	d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s	1e-18
d1fota_	316	d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni	2e-18
d1k2pa_	258	d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum	2e-18
d1jksa_	293	d.144.1.7 (A:) Death-associated protein kinase, Da	2e-18
d1mp8a_	273	d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma	2e-18
d2ozaa1	335	d.144.1.7 (A:51-385) MAP kinase activated protein	3e-18
d1fmka3	285	d.144.1.7 (A:249-533) c-src tyrosine kinase {Human	3e-18
d1csna_	293	d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast	4e-18
d1vjya_	303	d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human	4e-18
d1a06a_	307	d.144.1.7 (A:) Calmodulin-dependent protein kinase	6e-18
d1cm8a_	346	d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo s	6e-18
d1o6ya_	277	d.144.1.7 (A:) Mycobacterial protein kinase PknB,	8e-18
d1t46a_	311	d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens	2e-17
d1xwsa_	273	d.144.1.7 (A:) Proto-oncogene serine/threonine-pro	3e-17
d1sm2a_	263	d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu	3e-17
d1fgka_	299	d.144.1.7 (A:) Fibroblast growth factor receptor 1	3e-17
d1blxa_	305	d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H	5e-17
d1xjda_	320	d.144.1.7 (A:) Protein kinase C, theta type {Human	8e-17
d2gfsa1	348	d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sa	1e-16
d2b1pa1	355	d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3	2e-16
d1xkka_	317	d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-	2e-16
d1jpaa_	299	d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou	2e-16
d1omwa3	364	d.144.1.7 (A:186-549) G-protein coupled receptor k	2e-16
d1ob3a_	286	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod	4e-16
d1q8ya_	362	d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces	1e-15
d1u59a_	285	d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum	2e-15
d1fvra_	309	d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [	2e-15
d1p4oa_	308	d.144.1.7 (A:) Insulin-like growth factor 1 recept	3e-15
d1lufa_	301	d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n	3e-15
d1vzoa_	322	d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5	4e-15
d1unla_	292	d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (H	5e-15
d1mqba_	283	d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum	6e-15
d1ywna1	299	d.144.1.7 (A:818-1166) Vascular endothelial growth	3e-14
d1xbba_	277	d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human	6e-14
d1ua2a_	299	d.144.1.7 (A:) Cell division protein kinase 7, CDK	9e-14
d1gz8a_	298	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H	3e-13
d1r0pa_	311	d.144.1.7 (A:) Hepatocyte growth factor receptor,	7e-13
d1zara2	191	d.144.1.9 (A:91-281) Rio2 serine protein kinase C-	9e-11

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

 Score =  102 bits (256), Expect = 3e-26
 Identities = 44/188 (23%), Positives = 71/188 (37%), Gaps = 39/188 (20%)

Query: 26  NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN 85
           + Y I  +LG G F  V+ V                         +    +A K V+  +
Sbjct: 26  DHYDIHEELGTGAFGVVHRVT----------------------ERATGNNFAAKFVMTPH 63

Query: 86  NEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDH 145
               E VR+EI+  S+  H  L+ L D               +E  +++     G L + 
Sbjct: 64  ESDKETVRKEIQTMSVLRHPTLVNLHDA----------FEDDNEMVMIYEFMSGGELFEK 113

Query: 146 AKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAI 205
              +  +    S  + ++   Q+C GL HMH     Y H D+KP NI+ T ++       
Sbjct: 114 ---VADEHNKMSEDEAVEYMRQVCKGLCHMHEN--NYVHLDLKPENIMFTTKR--SNELK 166

Query: 206 LMDFGSAR 213
           L+DFG   
Sbjct: 167 LIDFGLTA 174

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.9 bits (246), Expect = 3e-25
 Identities = 47/243 (19%), Positives = 82/243 (33%), Gaps = 46/243 (18%)

Query: 25  ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ 84
           E+ + I+ +LG+G F  VY  +                      +       A K +  +
Sbjct: 11  EDFWEIIGELGDGAFGKVYKAQ----------------------NKETSVLAAAKVIDTK 48

Query: 85  NNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLD 144
           + E+LE    EI + +   H N++ LLD             +++  ++L      G  +D
Sbjct: 49  SEEELEDYMVEIDILASCDHPNIVKLLDA----------FYYENNLWILIE-FCAGGAVD 97

Query: 145 HAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLA 204
              VM   +   + S +  +  Q    L ++H       H D+K GNIL T   G   LA
Sbjct: 98  A--VMLELERPLTESQIQVVCKQTLDALNYLHDN--KIIHRDLKAGNILFT-LDGDIKLA 152

Query: 205 ILMDFGSARPAQSKFAL-----GQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELM 259
              DFG +              G   +     ++              V  + I + E+ 
Sbjct: 153 ---DFGVSAKNTRTIQRRDSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMA 209

Query: 260 FGR 262
              
Sbjct: 210 EIE 212

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 98.5 bits (245), Expect = 6e-25
 Identities = 43/196 (21%), Positives = 74/196 (37%), Gaps = 45/196 (22%)

Query: 25  ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKV--- 81
           E  +  LR++G G F  VY  +                       + +    A+KK+   
Sbjct: 14  EKLFSDLREIGHGSFGAVYFAR----------------------DVRNSEVVAIKKMSYS 51

Query: 82  LIQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGT 141
             Q+NE+ + + +E+R      H N +                  +H A+L+   +  G+
Sbjct: 52  GKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGC----------YLREHTAWLVME-YCLGS 100

Query: 142 LLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQP 201
             D    ++  K+     ++  + +    GL ++HS      H DVK GNIL++   G  
Sbjct: 101 ASDL---LEVHKKPLQEVEIAAVTHGALQGLAYLHSH--NMIHRDVKAGNILLS-EPGLV 154

Query: 202 PLAILMDFGSARPAQS 217
            L    DFGSA     
Sbjct: 155 KLG---DFGSASIMAP 167

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.0 bits (233), Expect = 4e-23
 Identities = 36/208 (17%), Positives = 68/208 (32%), Gaps = 45/208 (21%)

Query: 23  INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVL 82
           + ++ +  + +LG G    V+ V                       H       A K + 
Sbjct: 3   LKDDDFEKISELGAGNGGVVFKVS----------------------HKPSGLVMARKLIH 40

Query: 83  IQNNEQL-EMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGT 141
           ++    +   +  E++V    +   ++                    E  +    H+DG 
Sbjct: 41  LEIKPAIRNQIIRELQVLHECNSPYIVGFYGA----------FYSDGEISICME-HMDGG 89

Query: 142 LLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQP 201
            LD    +  K        + ++   +  GL ++   +    H DVKP NIL+   +G+ 
Sbjct: 90  SLDQ---VLKKAGRIPEQILGKVSIAVIKGLTYLRE-KHKIMHRDVKPSNILVN-SRGEI 144

Query: 202 PLAILMDFGSARPAQSKFA---LGQRRY 226
            L    DFG +       A   +G R Y
Sbjct: 145 KLC---DFGVSGQLIDSMANSFVGTRSY 169

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

 Score = 92.0 bits (228), Expect = 2e-22
 Identities = 43/192 (22%), Positives = 65/192 (33%), Gaps = 39/192 (20%)

Query: 26  NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN 85
           + Y IL +LG G F  V+                           +    +  K +    
Sbjct: 29  DYYDILEELGSGAFGVVHRCV----------------------EKATGRVFVAKFINTPY 66

Query: 86  NEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDH 145
                 V+ EI + +   H  L+ L D              K+E  L+      G L D 
Sbjct: 67  PLDKYTVKNEISIMNQLHHPKLINLHDA----------FEDKYEMVLILEFLSGGELFDR 116

Query: 146 AKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAI 205
              +  +    S ++V+    Q C GLKHMH       H D+KP NI+   +K       
Sbjct: 117 ---IAAEDYKMSEAEVINYMRQACEGLKHMHEH--SIVHLDIKPENIMCETKK--ASSVK 169

Query: 206 LMDFGSARPAQS 217
           ++DFG A     
Sbjct: 170 IIDFGLATKLNP 181

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.5 bits (224), Expect = 3e-22
 Identities = 44/239 (18%), Positives = 88/239 (36%), Gaps = 57/239 (23%)

Query: 22  W-INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKK 80
           W +N    ++L+ +G+G F  V L                                A+K 
Sbjct: 2   WALNMKELKLLQTIGKGEFGDVMLGDYR------------------------GNKVAVKC 37

Query: 81  VLIQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDG 140
             I+N+   +    E  V +   H NL+ LL   +           K   Y++      G
Sbjct: 38  --IKNDATAQAFLAEASVMTQLRHSNLVQLLGVIV---------EEKGGLYIVTEYMAKG 86

Query: 141 TLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQ 200
           +L+D+  +    +       +L+    +C  ++++      + H D+   N+L++     
Sbjct: 87  SLVDY--LRSRGRSVLGGDCLLKFSLDVCEAMEYLEG--NNFVHRDLAARNVLVSEDN-- 140

Query: 201 PPLAILMDFGSARPAQSKF-------------ALGQRRYSCRNGLLSIVLHLSELLSCG 246
             +A + DFG  + A S               AL ++++S ++ + S  + L E+ S G
Sbjct: 141 --VAKVSDFGLTKEASSTQDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFG 197

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.9 bits (220), Expect = 1e-21
 Identities = 36/195 (18%), Positives = 68/195 (34%), Gaps = 44/195 (22%)

Query: 20  DVW-INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAM 78
           D W I + +  + +++G G F  VY  K           G +A K+ + +  +       
Sbjct: 1   DDWEIPDGQITVGQRIGSGSFGTVYKGKWH---------GDVAVKMLNVTAPTP------ 45

Query: 79  KKVLIQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHL 138
                   +QL+  + E+ V     H N+L  + +           S   +  ++     
Sbjct: 46  --------QQLQAFKNEVGVLRKTRHVNILLFMGY-----------STAPQLAIVTQWCE 86

Query: 139 DGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRK 198
             +L  H   +   +  F    ++ I  Q   G+ ++H       H D+K  NI +    
Sbjct: 87  GSSLYHH---LHIIETKFEMIKLIDIARQTAQGMDYLH--AKSIIHRDLKSNNIFLH-ED 140

Query: 199 GQPPLAILMDFGSAR 213
               +    DFG A 
Sbjct: 141 LTVKIG---DFGLAT 152

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.1 bits (218), Expect = 3e-21
 Identities = 27/171 (15%), Positives = 57/171 (33%), Gaps = 39/171 (22%)

Query: 25  ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ 84
           + +Y    ++G+G    VY                          ++     A++++ +Q
Sbjct: 19  KKKYTRFEKIGQGASGTVYTAM----------------------DVATGQEVAIRQMNLQ 56

Query: 85  NNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLD 144
              + E++  EI V     + N++  LD                E +++      G+L D
Sbjct: 57  QQPKKELIINEILVMRENKNPNIVNYLDS----------YLVGDELWVVMEYLAGGSLTD 106

Query: 145 HAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILIT 195
                   +       +  +  +    L+ +HS      H D+K  NIL+ 
Sbjct: 107 V-----VTETCMDEGQIAAVCRECLQALEFLHSN--QVIHRDIKSDNILLG 150

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.3 bits (216), Expect = 4e-21
 Identities = 40/196 (20%), Positives = 64/196 (32%), Gaps = 45/196 (22%)

Query: 26  NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMK---KVL 82
             + I R LG+G F  VYL +                              A+K   K  
Sbjct: 6   EDFEIGRPLGKGKFGNVYLAR----------------------EKQSKFILALKVLFKAQ 43

Query: 83  IQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTL 142
           ++       +R E+ + S   H N+L L  +                 YL+      GT+
Sbjct: 44  LEKAGVEHQLRREVEIQSHLRHPNILRLYGY----------FHDATRVYLILEYAPLGTV 93

Query: 143 LDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPP 202
               + +      F          ++   L + HS      H D+KP N+L+    G+  
Sbjct: 94  YRELQKLSK----FDEQRTATYITELANALSYCHSK--RVIHRDIKPENLLLG-SAGELK 146

Query: 203 LAILMDFGSARPAQSK 218
           +A   DFG +  A S 
Sbjct: 147 IA---DFGWSVHAPSS 159

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.4 bits (216), Expect = 4e-21
 Identities = 45/198 (22%), Positives = 71/198 (35%), Gaps = 34/198 (17%)

Query: 24  NENRY-RILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVL 82
           N+ R+ +   ++G G F  VY   +T TT   A              L+           
Sbjct: 6   NDGRFLKFDIEIGRGSFKTVYKGLDTETTVEVAW------CELQDRKLTKS--------- 50

Query: 83  IQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTL 142
                + +  +EE  +     H N++   D     VK       K    L+  +   GTL
Sbjct: 51  -----ERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKG------KKCIVLVTELMTSGTL 99

Query: 143 LDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPP 202
             + K    + +      +     QI  GL+ +H+  PP  H D+K  NI IT   G   
Sbjct: 100 KTYLK----RFKVMKIKVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFITGPTGSVK 155

Query: 203 LAILMDFGSARPAQSKFA 220
           +    D G A   ++ FA
Sbjct: 156 IG---DLGLATLKRASFA 170

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.2 bits (218), Expect = 4e-21
 Identities = 39/187 (20%), Positives = 72/187 (38%), Gaps = 40/187 (21%)

Query: 27  RYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNN 86
           +Y I   LG G F  V+                           S   TY  K V ++  
Sbjct: 6   KYMIAEDLGRGEFGIVHRCV----------------------ETSSKKTYMAKFVKVKGT 43

Query: 87  EQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHA 146
           +Q  +V++EI + ++  HRN+L L +                E  ++F       + +  
Sbjct: 44  DQ-VLVKKEISILNIARHRNILHLHES----------FESMEELVMIFEFISGLDIFER- 91

Query: 147 KVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAIL 206
             + T     +  +++   +Q+C  L+ +HS      H D++P NI+   R+       +
Sbjct: 92  --INTSAFELNEREIVSYVHQVCEALQFLHSH--NIGHFDIRPENIIYQTRR--SSTIKI 145

Query: 207 MDFGSAR 213
           ++FG AR
Sbjct: 146 IEFGQAR 152

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.2 bits (213), Expect = 1e-20
 Identities = 34/191 (17%), Positives = 61/191 (31%), Gaps = 39/191 (20%)

Query: 28  YRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNN- 86
           Y +L  +G G +     ++                        SD      K++   +  
Sbjct: 6   YEVLYTIGTGSYGRCQKIR----------------------RKSDGKILVWKELDYGSMT 43

Query: 87  -EQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDH 145
             + +M+  E+ +     H N++   D  I               Y++      G L   
Sbjct: 44  EAEKQMLVSEVNLLRELKHPNIVRYYDRII--------DRTNTTLYIVMEYCEGGDLASV 95

Query: 146 AKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSL---EPPYAHNDVKPGNILITCRKGQPP 202
                 ++++     VL++  Q+   LK  H          H D+KP N+ +   K    
Sbjct: 96  ITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDG-KQNVK 154

Query: 203 LAILMDFGSAR 213
           L    DFG AR
Sbjct: 155 LG---DFGLAR 162

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.8 bits (212), Expect = 2e-20
 Identities = 36/189 (19%), Positives = 71/189 (37%), Gaps = 43/189 (22%)

Query: 26  NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN 85
             + +++ LGEG +  V L                        +   +   A+K V ++ 
Sbjct: 5   EDWDLVQTLGEGAYGEVQLAV----------------------NRVTEEAVAVKIVDMKR 42

Query: 86  N-EQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLD 144
             +  E +++EI ++ + +H N++    H              +  YL       G L D
Sbjct: 43  AVDCPENIKKEICINKMLNHENVVKFYGH----------RREGNIQYLFLEYCSGGELFD 92

Query: 145 HAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLA 204
             +            D  + F+Q+ AG+ ++H +     H D+KP N+L+   +    ++
Sbjct: 93  RIE----PDIGMPEPDAQRFFHQLMAGVVYLHGI--GITHRDIKPENLLLDE-RDNLKIS 145

Query: 205 ILMDFGSAR 213
              DFG A 
Sbjct: 146 ---DFGLAT 151

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.5 bits (211), Expect = 2e-20
 Identities = 36/200 (18%), Positives = 68/200 (34%), Gaps = 44/200 (22%)

Query: 20  DVW-INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAM 78
           D W +     +++ +LG G F  V++                          +     A+
Sbjct: 6   DEWEVPRETLKLVERLGAGQFGEVWMGY-----------------------YNGHTKVAV 42

Query: 79  KKVLIQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHL 138
           K  L Q +   +    E  +     H+ L+ L                +   Y++     
Sbjct: 43  KS-LKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVT-----------QEPIYIITEYME 90

Query: 139 DGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRK 198
           +G+L+D  K     K   + + +L +  QI  G+  +      Y H D++  NIL++   
Sbjct: 91  NGSLVDFLKTPSGIK--LTINKLLDMAAQIAEGMAFIEE--RNYIHRDLRAANILVSDTL 146

Query: 199 GQPPLAILMDFGSARPAQSK 218
                  + DFG AR  +  
Sbjct: 147 SCK----IADFGLARLIEDN 162

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} Length = 328

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

 Score = 86.0 bits (212), Expect = 3e-20
 Identities = 34/193 (17%), Positives = 73/193 (37%), Gaps = 46/193 (23%)

Query: 22  WINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKV 81
           W N++ Y+++R+LG G ++ V+                         +++++    +K +
Sbjct: 31  WGNQDDYQLVRKLGRGKYSEVFEAI----------------------NITNNEKVVVKIL 68

Query: 82  LIQNNEQLEMVREEIRV-SSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDG 140
                 + + ++ EI++  +L    N++ L D          +        L+F    + 
Sbjct: 69  ---KPVKKKKIKREIKILENLRGGPNIITLADIV--------KDPVSRTPALVFEHVNNT 117

Query: 141 TLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQ 200
                 +         +  D+    Y+I   L + HS+     H DVKP N++I     +
Sbjct: 118 DFKQLYQT-------LTDYDIRFYMYEILKALDYCHSM--GIMHRDVKPHNVMIDHEHRK 168

Query: 201 PPLAILMDFGSAR 213
                L+D+G A 
Sbjct: 169 L---RLIDWGLAE 178

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.7 bits (211), Expect = 3e-20
 Identities = 47/190 (24%), Positives = 78/190 (41%), Gaps = 36/190 (18%)

Query: 26  NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN 85
           ++Y  L ++G+G F  V+  +                      H       A+KKVL++N
Sbjct: 10  SKYEKLAKIGQGTFGEVFKAR----------------------HRKTGQKVALKKVLMEN 47

Query: 86  NEQ--LEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLL 143
            ++        EI++  L  H N++ L++  I   KA+     K   YL+F         
Sbjct: 48  EKEGFPITALREIKILQLLKHENVVNLIE--ICRTKASPYNRCKGSIYLVFDFCEHDLAG 105

Query: 144 DHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPL 203
             +         F+ S++ ++   +  GL ++H       H D+K  N+LIT R G   L
Sbjct: 106 LLSN----VLVKFTLSEIKRVMQMLLNGLYYIHR--NKILHRDMKAANVLIT-RDGVLKL 158

Query: 204 AILMDFGSAR 213
           A   DFG AR
Sbjct: 159 A---DFGLAR 165

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.3 bits (210), Expect = 8e-20
 Identities = 44/196 (22%), Positives = 73/196 (37%), Gaps = 40/196 (20%)

Query: 19  GDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAM 78
           G V+    RY  L  +GEG +  V                             +    A+
Sbjct: 1   GQVFDVGPRYTNLSYIGEGAYGMVCSAY----------------------DNVNKVRVAI 38

Query: 79  KKV-LIQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVH 137
           KK+   ++    +    EI++   F H N++ + D         +  + +    +    H
Sbjct: 39  KKISPFEHQTYCQRTLREIKILLRFRHENIIGIND-------IIRAPTIEQMKDVYLVTH 91

Query: 138 LDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCR 197
           L G   D  K+++T+    S   +    YQI  GLK++HS      H D+KP N+L+   
Sbjct: 92  LMGA--DLYKLLKTQH--LSNDHICYFLYQILRGLKYIHSA--NVLHRDLKPSNLLLN-- 143

Query: 198 KGQPPLAILMDFGSAR 213
                   + DFG AR
Sbjct: 144 --TTCDLKICDFGLAR 157

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 84.0 bits (207), Expect = 1e-19
 Identities = 42/245 (17%), Positives = 84/245 (34%), Gaps = 59/245 (24%)

Query: 20  DVW-INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAM 78
           D W +      +  +LG G +  VY                               T A+
Sbjct: 10  DKWEMERTDITMKHKLGGGQYGEVYEGV----------------------WKKYSLTVAV 47

Query: 79  KKVLIQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHL 138
            K L ++  ++E   +E  V     H NL+ LL             + +   Y++     
Sbjct: 48  -KTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGV----------CTREPPFYIITEFMT 96

Query: 139 DGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRK 198
            G LLD+  + +  ++  S   +L +  QI + ++++      + H D+   N L+    
Sbjct: 97  YGNLLDY--LRECNRQEVSAVVLLYMATQISSAMEYLEK--KNFIHRDLAARNCLVG-EN 151

Query: 199 GQPPLAILMDFGSARPAQSK-----------------FALGQRRYSCRNGLLSIVLHLSE 241
               +A   DFG +R                       +L   ++S ++ + +  + L E
Sbjct: 152 HLVKVA---DFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWE 208

Query: 242 LLSCG 246
           + + G
Sbjct: 209 IATYG 213

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.9 bits (207), Expect = 1e-19
 Identities = 37/190 (19%), Positives = 66/190 (34%), Gaps = 45/190 (23%)

Query: 27  RYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKV---LI 83
            ++  + LGEG F+ V L +                       L+    YA+K +    I
Sbjct: 9   DFKFGKILGEGSFSTVVLAR----------------------ELATSREYAIKILEKRHI 46

Query: 84  QNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLL 143
               ++  V  E  V S   H   + L                  + Y       +G LL
Sbjct: 47  IKENKVPYVTRERDVMSRLDHPFFVKLYFT----------FQDDEKLYFGLSYAKNGELL 96

Query: 144 DHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPL 203
            + + + +    F  +       +I + L+++H       H D+KP NIL+     +   
Sbjct: 97  KYIRKIGS----FDETCTRFYTAEIVSALEYLHG--KGIIHRDLKPENILLN----EDMH 146

Query: 204 AILMDFGSAR 213
             + DFG+A+
Sbjct: 147 IQITDFGTAK 156

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.9 bits (204), Expect = 2e-19
 Identities = 38/239 (15%), Positives = 77/239 (32%), Gaps = 47/239 (19%)

Query: 23  INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVL 82
           I E   R+L +LG+G F  V   +    +        ++  VK            +K  +
Sbjct: 5   IGEKDLRLLEKLGDGSFGVVRRGEWDAPSGK-----TVSVAVK-----------CLKPDV 48

Query: 83  IQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTL 142
           +   E ++    E+       HRNL+ L                     ++  +   G+L
Sbjct: 49  LSQPEAMDDFIREVNAMHSLDHRNLIRLYGV-----------VLTPPMKMVTELAPLGSL 97

Query: 143 LDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITC----RK 198
           LD    ++  +  F    + +   Q+  G+ ++ S    + H D+   N+L+      + 
Sbjct: 98  LDR---LRKHQGHFLLGTLSRYAVQVAEGMGYLES--KRFIHRDLAARNLLLATRDLVKI 152

Query: 199 GQPPLAILMDFGSARPAQSKFALG-----------QRRYSCRNGLLSIVLHLSELLSCG 246
           G   L   +          +                R +S  +      + L E+ + G
Sbjct: 153 GDFGLMRALPQNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYG 211

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.9 bits (204), Expect = 5e-19
 Identities = 42/243 (17%), Positives = 77/243 (31%), Gaps = 45/243 (18%)

Query: 23  INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKV- 81
           +  N +  L+ LG+G F  V LV+                        +    YAMK + 
Sbjct: 2   VTMNDFDYLKLLGKGTFGKVILVR----------------------EKATGRYYAMKILR 39

Query: 82  --LIQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLD 139
             +I   +++     E RV     H  L                         +      
Sbjct: 40  KEVIIAKDEVAHTVTESRVLQNTRHPFL----------TALKYAFQTHDRLCFVMEYANG 89

Query: 140 GTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKG 199
           G L  H      ++  F+         +I + L+++H       + D+K  N+++     
Sbjct: 90  GELFFHLS----RERVFTEERARFYGAEIVSALEYLH--SRDVVYRDIKLENLMLD---- 139

Query: 200 QPPLAILMDFGSARPAQSKFALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELM 259
           +     + DFG  +   S  A  +        L   VL  ++         + ++M E+M
Sbjct: 140 KDGHIKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMM 199

Query: 260 FGR 262
            GR
Sbjct: 200 CGR 202

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 82.9 bits (204), Expect = 5e-19
 Identities = 39/197 (19%), Positives = 66/197 (33%), Gaps = 45/197 (22%)

Query: 26  NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKV---L 82
           +++  ++ LG G F  V LVK                      H      YAMK +    
Sbjct: 41  DQFDRIKTLGTGSFGRVMLVK----------------------HKESGNHYAMKILDKQK 78

Query: 83  IQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTL 142
           +   +Q+E    E R+    +   L+ L                    Y++      G +
Sbjct: 79  VVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFK----------DNSNLYMVMEYVAGGEM 128

Query: 143 LDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPP 202
             H      +   FS         QI    +++HSL     + D+KP N+LI  +     
Sbjct: 129 FSH----LRRIGRFSEPHARFYAAQIVLTFEYLHSL--DLIYRDLKPENLLIDQQG---- 178

Query: 203 LAILMDFGSARPAQSKF 219
              + DFG A+  + + 
Sbjct: 179 YIQVTDFGFAKRVKGRT 195

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 81.3 bits (200), Expect = 7e-19
 Identities = 31/191 (16%), Positives = 55/191 (28%), Gaps = 32/191 (16%)

Query: 27  RYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNN 86
            Y     LG G  + V                          H      YA+K + +   
Sbjct: 4   NYEPKEILGRGVSSVVRRCI----------------------HKPTCKEYAVKIIDVTGG 41

Query: 87  EQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHA 146
                   +    +     ++L  +      ++           +L+F +   G L D+ 
Sbjct: 42  GSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYETNTFFFLVFDLMKKGELFDYL 101

Query: 147 KVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAIL 206
                +K   S  +  +I   +   +  +H L     H D+KP NIL+        L   
Sbjct: 102 T----EKVTLSEKETRKIMRALLEVICALHKL--NIVHRDLKPENILLD-DDMNIKLT-- 152

Query: 207 MDFGSARPAQS 217
            DFG +     
Sbjct: 153 -DFGFSCQLDP 162

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.1 bits (202), Expect = 1e-18
 Identities = 43/190 (22%), Positives = 64/190 (33%), Gaps = 38/190 (20%)

Query: 25  ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ 84
           E  Y   + +G G F  VY  K                              A+KKV   
Sbjct: 19  EVSYTDTKVIGNGSFGVVYQAK----------------------LCDSGELVAIKKV--- 53

Query: 85  NNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYL-LFPVHLDGTLL 143
             +       E+++     H N++ L             G  K E YL L   ++  T+ 
Sbjct: 54  -LQDKRFKNRELQIMRKLDHCNIVRLRYFFY------SSGEKKDEVYLNLVLDYVPETVY 106

Query: 144 DHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPL 203
             A+     K+      V    YQ+   L ++HS      H D+KP N+L+        L
Sbjct: 107 RVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFG--ICHRDIKPQNLLLDPDTAVLKL 164

Query: 204 AILMDFGSAR 213
               DFGSA+
Sbjct: 165 C---DFGSAK 171

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 81.0 bits (199), Expect = 1e-18
 Identities = 38/207 (18%), Positives = 72/207 (34%), Gaps = 40/207 (19%)

Query: 26  NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN 85
           NRYR+ R++G G F  +YL                         ++     A+K   ++ 
Sbjct: 7   NRYRLGRKIGSGSFGDIYLGT----------------------DIAAGEEVAIKLECVKT 44

Query: 86  NEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDH 145
                 +  E ++  +      +P +               + +  ++    L  +L D 
Sbjct: 45  KH--PQLHIESKIYKMMQGGVGIPTIRWCGA----------EGDYNVMVMELLGPSLEDL 92

Query: 146 AKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAI 205
                     FS   VL +  Q+ + ++++HS    + H DVKP N L+     +  L  
Sbjct: 93  ---FNFCSRKFSLKTVLLLADQMISRIEYIHSKN--FIHRDVKPDNFLM-GLGKKGNLVY 146

Query: 206 LMDFGSARPAQSKFALGQRRYSCRNGL 232
           ++DFG A+  +         Y     L
Sbjct: 147 IIDFGLAKKYRDARTHQHIPYRENKNL 173

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.4 bits (200), Expect = 1e-18
 Identities = 46/264 (17%), Positives = 82/264 (31%), Gaps = 72/264 (27%)

Query: 23  INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVL 82
                    + LG G F  V                         S        A+K + 
Sbjct: 34  FPRENLEFGKVLGSGAFGKVMNATA-----------------YGISKTGVSIQVAVKMLK 76

Query: 83  IQNN--EQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDG 140
            + +  E+  ++ E   ++ L SH N++ LL             +     YL+F     G
Sbjct: 77  EKADSSEREALMSELKMMTQLGSHENIVNLLGA----------CTLSGPIYLIFEYCCYG 126

Query: 141 TLLDHAKVMQTK-------------------KEFFSTSDVLQIFYQICAGLKHMHSLEPP 181
            LL++ +  + K                       +  D+L   YQ+  G++ +      
Sbjct: 127 DLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEF--KS 184

Query: 182 YAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKFA------------------LGQ 223
             H D+   N+L+T       +  + DFG AR   S                     L +
Sbjct: 185 CVHRDLAARNVLVT----HGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFE 240

Query: 224 RRYSCRNGLLSIVLHLSELLSCGT 247
             Y+ ++ + S  + L E+ S G 
Sbjct: 241 GIYTIKSDVWSYGILLWEIFSLGV 264

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 80.9 bits (199), Expect = 2e-18
 Identities = 37/195 (18%), Positives = 74/195 (37%), Gaps = 45/195 (23%)

Query: 28  YRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKV---LIQ 84
           ++ILR LG G F  V+L++                         +   YAMK +   ++ 
Sbjct: 6   FQILRTLGTGSFGRVHLIR----------------------SRHNGRYYAMKVLKKEIVV 43

Query: 85  NNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLD 144
             +Q+E   +E  + S+ +H  ++ +        +  Q+     +       +++G  L 
Sbjct: 44  RLKQVEHTNDERLMLSIVTHPFIIRMWG----TFQDAQQIFMIMD-------YIEGGELF 92

Query: 145 HAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLA 204
               +  K + F          ++C  L+++H       + D+KP NIL+  + G   + 
Sbjct: 93  S---LLRKSQRFPNPVAKFYAAEVCLALEYLH--SKDIIYRDLKPENILLD-KNGHIKIT 146

Query: 205 ILMDFGSARPAQSKF 219
              DFG A+      
Sbjct: 147 ---DFGFAKYVPDVT 158

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.1 bits (197), Expect = 2e-18
 Identities = 37/241 (15%), Positives = 82/241 (34%), Gaps = 60/241 (24%)

Query: 23  INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVL 82
           I+      L++LG G F  V   K                              A+ K++
Sbjct: 1   IDPKDLTFLKELGTGQFGVVKYGK-----------------------WRGQYDVAI-KMI 36

Query: 83  IQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTL 142
            + +   +   EE +V    SH  L+ L              + +   +++     +G L
Sbjct: 37  KEGSMSEDEFIEEAKVMMNLSHEKLVQLYGV----------CTKQRPIFIITEYMANGCL 86

Query: 143 LDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPP 202
           L++   ++  +  F T  +L++   +C  ++++      + H D+   N L+        
Sbjct: 87  LNY---LREMRHRFQTQQLLEMCKDVCEAMEYLE--SKQFLHRDLAARNCLVN----DQG 137

Query: 203 LAILMDFGSARPAQSKFA-----------------LGQRRYSCRNGLLSIVLHLSELLSC 245
           +  + DFG +R                        L   ++S ++ + +  + + E+ S 
Sbjct: 138 VVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSL 197

Query: 246 G 246
           G
Sbjct: 198 G 198

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.6 bits (198), Expect = 2e-18
 Identities = 41/211 (19%), Positives = 69/211 (32%), Gaps = 44/211 (20%)

Query: 25  ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKV--- 81
           ++ Y    +LG G FA V   +                        S    YA K +   
Sbjct: 9   DDYYDTGEELGSGQFAVVKKCR----------------------EKSTGLQYAAKFIKKR 46

Query: 82  ---LIQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHL 138
                +     E +  E+ +     H N++ L +              K +  L+  +  
Sbjct: 47  RTKSSRRGVSREDIEREVSILKEIQHPNVITLHEV----------YENKTDVILILELVA 96

Query: 139 DGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRK 198
            G L D       +KE  +  +  +   QI  G+ ++HS     AH D+KP NI++  R 
Sbjct: 97  GGELFDF----LAEKESLTEEEATEFLKQILNGVYYLHS--LQIAHFDLKPENIMLLDRN 150

Query: 199 GQPPLAILMDFGSARPAQSKFALGQRRYSCR 229
              P   ++DFG A              +  
Sbjct: 151 VPKPRIKIIDFGLAHKIDFGNEFKNIFGTPE 181

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.2 bits (197), Expect = 2e-18
 Identities = 32/192 (16%), Positives = 65/192 (33%), Gaps = 40/192 (20%)

Query: 23  INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKV- 81
           I   R  + R +GEG F  V+        + + A                    A+K   
Sbjct: 4   IQRERIELGRCIGEGQFGDVHQGIYMSPENPALA-------------------VAIKTCK 44

Query: 82  LIQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGT 141
              ++   E   +E      F H +++ L+               ++  +++  +   G 
Sbjct: 45  NCTSDSVREKFLQEALTMRQFDHPHIVKLIGV-----------ITENPVWIIMELCTLGE 93

Query: 142 LLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQP 201
           L      +Q +K     + ++   YQ+   L ++      + H D+   N+L++      
Sbjct: 94  LRSF---LQVRKYSLDLASLILYAYQLSTALAYLE--SKRFVHRDIAARNVLVS----SN 144

Query: 202 PLAILMDFGSAR 213
               L DFG +R
Sbjct: 145 DCVKLGDFGLSR 156

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.5 bits (198), Expect = 3e-18
 Identities = 34/194 (17%), Positives = 67/194 (34%), Gaps = 40/194 (20%)

Query: 26  NRYRILRQ-LGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ 84
           + Y++  Q LG G    V  +                       +      +A+K +   
Sbjct: 11  DDYKVTSQVLGLGINGKVLQIF----------------------NKRTQEKFALKML--- 45

Query: 85  NNEQLEMVREEIRV-SSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLL 143
             +     R E+ +        +++ ++D            + +    ++      G L 
Sbjct: 46  --QDCPKARREVELHWRASQCPHIVRIVDVYE------NLYAGRKCLLIVMECLDGGELF 97

Query: 144 DHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPL 203
               +     + F+  +  +I   I   ++++HS+    AH DVKP N+L T  K    +
Sbjct: 98  SR--IQDRGDQAFTEREASEIMKSIGEAIQYLHSIN--IAHRDVKPENLLYT-SKRPNAI 152

Query: 204 AILMDFGSARPAQS 217
             L DFG A+   S
Sbjct: 153 LKLTDFGFAKETTS 166

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.8 bits (196), Expect = 3e-18
 Identities = 46/245 (18%), Positives = 82/245 (33%), Gaps = 61/245 (24%)

Query: 20  DVW-INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAM 78
           D W I     R+  +LG+G F  V++                          +     A+
Sbjct: 10  DAWEIPRESLRLEVKLGQGCFGEVWMGT-----------------------WNGTTRVAI 46

Query: 79  KKVLIQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHL 138
            K L       E   +E +V     H  L+ L                +   Y++     
Sbjct: 47  -KTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAV-----------VSEEPIYIVTEYMS 94

Query: 139 DGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRK 198
            G+LLD  K      ++     ++ +  QI +G+ ++      Y H D++  NIL+    
Sbjct: 95  KGSLLDFLK--GETGKYLRLPQLVDMAAQIASGMAYVE--RMNYVHRDLRAANILVG-EN 149

Query: 199 GQPPLAILMDFGSARPAQSK-----------------FALGQRRYSCRNGLLSIVLHLSE 241
               +A   DFG AR  +                    A    R++ ++ + S  + L+E
Sbjct: 150 LVCKVA---DFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTE 206

Query: 242 LLSCG 246
           L + G
Sbjct: 207 LTTKG 211

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 79.5 bits (195), Expect = 4e-18
 Identities = 34/208 (16%), Positives = 66/208 (31%), Gaps = 40/208 (19%)

Query: 26  NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN 85
             Y++ R++GEG F  ++                         +L ++   A+K      
Sbjct: 5   VHYKVGRRIGEGSFGVIFEGT----------------------NLLNNQQVAIK--FEPR 40

Query: 86  NEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDH 145
                 +R+E R   L +    +P + +          G       L+  +         
Sbjct: 41  RSDAPQLRDEYRTYKLLAGCTGIPNVYYF---------GQEGLHNVLVIDLLGP----SL 87

Query: 146 AKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAI 205
             ++      FS   V     Q+ A ++ +H       + D+KP N LI     +    I
Sbjct: 88  EDLLDLCGRKFSVKTVAMAAKQMLARVQSIHEKS--LVYRDIKPDNFLIGRPNSKNANMI 145

Query: 206 -LMDFGSARPAQSKFALGQRRYSCRNGL 232
            ++DFG  +  +         Y  +  L
Sbjct: 146 YVVDFGMVKFYRDPVTKQHIPYREKKNL 173

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.5 bits (195), Expect = 4e-18
 Identities = 34/191 (17%), Positives = 65/191 (34%), Gaps = 46/191 (24%)

Query: 26  NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN 85
               +   +G+G F  V+  K                              A+ K+    
Sbjct: 3   RTIVLQESIGKGRFGEVWRGKWR------------------------GEEVAV-KIFSSR 37

Query: 86  NEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDH 145
            E+      EI  + +  H N+L  +          ++     + +L+   H  G+L D+
Sbjct: 38  EERSWFREAEIYQTVMLRHENILGFIAADN------KDNGTWTQLWLVSDYHEHGSLFDY 91

Query: 146 AKVMQTKKEFFSTSDVLQIFYQICAGLKHMHS------LEPPYAHNDVKPGNILITCRKG 199
                  +   +   ++++     +GL H+H        +P  AH D+K  NIL+  + G
Sbjct: 92  -----LNRYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVK-KNG 145

Query: 200 QPPLAILMDFG 210
              +A   D G
Sbjct: 146 TCCIA---DLG 153

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 79.3 bits (195), Expect = 6e-18
 Identities = 37/190 (19%), Positives = 67/190 (35%), Gaps = 40/190 (21%)

Query: 25  ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ 84
            + Y     LG G F+ V L +                              A+K +  +
Sbjct: 8   RDIYDFRDVLGTGAFSEVILAE----------------------DKRTQKLVAIKCIAKK 45

Query: 85  NNE-QLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLL 143
             E +   +  EI V     H N++ L D                  YL+  +   G L 
Sbjct: 46  ALEGKEGSMENEIAVLHKIKHPNIVALDDI----------YESGGHLYLIMQLVSGGELF 95

Query: 144 DHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPL 203
           D       +K F++  D  ++ +Q+   +K++H  +    H D+KP N+L         +
Sbjct: 96  DRIV----EKGFYTERDASRLIFQVLDAVKYLH--DLGIVHRDLKPENLLYYSLDEDSKI 149

Query: 204 AILMDFGSAR 213
            ++ DFG ++
Sbjct: 150 -MISDFGLSK 158

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 346

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.9 bits (196), Expect = 6e-18
 Identities = 41/210 (19%), Positives = 72/210 (34%), Gaps = 40/210 (19%)

Query: 12  YDSVNGGGDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLS 71
           +         W     YR L+ +G G +  V                             
Sbjct: 4   FYRQEVTKTAWEVRAVYRDLQPVGSGAYGAVCSAV----------------------DGR 41

Query: 72  DDGTYAMKKVL--IQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHE 129
                A+KK+    Q+    +    E+R+     H N++ LLD        ++      +
Sbjct: 42  TGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLD----VFTPDETLDDFTD 97

Query: 130 AYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKP 189
            YL+ P       +        K E      +  + YQ+  GL+++H+      H D+KP
Sbjct: 98  FYLVMP------FMGTDLGKLMKHEKLGEDRIQFLVYQMLKGLRYIHAA--GIIHRDLKP 149

Query: 190 GNILITCRKGQPPLAILMDFGSARPAQSKF 219
           GN+ +     +     ++DFG AR A S+ 
Sbjct: 150 GNLAVN----EDCELKILDFGLARQADSEM 175

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 78.6 bits (193), Expect = 8e-18
 Identities = 34/195 (17%), Positives = 60/195 (30%), Gaps = 37/195 (18%)

Query: 26  NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKV---L 82
           +RY +   LG GG + V+L +                       L      A+K +   L
Sbjct: 7   DRYELGEILGFGGMSEVHLAR----------------------DLRLHRDVAVKVLRADL 44

Query: 83  IQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTL 142
            ++       R E + ++  +H  ++ + D          E       Y++       TL
Sbjct: 45  ARDPSFYLRFRREAQNAAALNHPAIVAVYDTGE------AETPAGPLPYIVMEYVDGVTL 98

Query: 143 LDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPP 202
            D            +    +++    C  L   H       H DVKP NI+I+       
Sbjct: 99  RDIVHTEGP----MTPKRAIEVIADACQALNFSHQ--NGIIHRDVKPANIMISATNAVKV 152

Query: 203 LAILMDFGSARPAQS 217
           +   +    A    S
Sbjct: 153 MDFGIARAIADSGNS 167

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.3 bits (192), Expect = 2e-17
 Identities = 38/204 (18%), Positives = 66/204 (32%), Gaps = 33/204 (16%)

Query: 23  INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKV- 81
              NR    + LG G F  V                                T A+K + 
Sbjct: 20  FPRNRLSFGKTLGAGAFGKVVEA-----------------TAYGLIKSDAAMTVAVKMLK 62

Query: 82  LIQNNEQLEMVREEIRV-SSLFSHRNLLPLLD------HAIIAVKANQEGSWKHEAYLLF 134
              +  + E +  E++V S L +H N++ LL         ++  +    G   +  +L  
Sbjct: 63  PSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDLLN--FLRR 120

Query: 135 PVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILI 194
                        +M+  +      D+L   YQ+  G+  + S      H D+   NIL+
Sbjct: 121 KRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLAS--KNCIHRDLAARNILL 178

Query: 195 TCRKGQPPLAILMDFGSARPAQSK 218
                   +    DFG AR  ++ 
Sbjct: 179 -THGRITKIC---DFGLARDIKND 198

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.0 bits (189), Expect = 3e-17
 Identities = 38/189 (20%), Positives = 65/189 (34%), Gaps = 32/189 (16%)

Query: 25  ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ 84
           E++Y++   LG GGF  VY                          +SD+   A+K V   
Sbjct: 3   ESQYQVGPLLGSGGFGSVYSGI----------------------RVSDNLPVAIKHVEKD 40

Query: 85  NNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLD 144
                  +    RV        LL  +      V    +   + ++++L     +     
Sbjct: 41  RISDWGELPNGTRV---PMEVVLLKKVSSGFSGVIRLLDWFERPDSFVLILERPEPVQDL 97

Query: 145 HAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLA 204
              +  T++           F+Q+   ++H H+      H D+K  NILI   +G+  L 
Sbjct: 98  FDFI--TERGALQEELARSFFWQVLEAVRHCHNC--GVLHRDIKDENILIDLNRGELKLI 153

Query: 205 ILMDFGSAR 213
              DFGS  
Sbjct: 154 ---DFGSGA 159

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.6 bits (188), Expect = 3e-17
 Identities = 31/182 (17%), Positives = 62/182 (34%), Gaps = 40/182 (21%)

Query: 23  INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVL 82
           I+ +    ++++G G F  V+L                        +  +    A+ K +
Sbjct: 2   IDPSELTFVQEIGSGQFGLVHLG-----------------------YWLNKDKVAI-KTI 37

Query: 83  IQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTL 142
            +     E   EE  V    SH  L+ L                +    L+F     G L
Sbjct: 38  REGAMSEEDFIEEAEVMMKLSHPKLVQLYGV----------CLEQAPICLVFEFMEHGCL 87

Query: 143 LDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPP 202
            D+   ++T++  F+   +L +   +C G+ ++   E    H D+   N L+        
Sbjct: 88  SDY---LRTQRGLFAAETLLGMCLDVCEGMAYLE--EACVIHRDLAARNCLVG-ENQVIK 141

Query: 203 LA 204
           ++
Sbjct: 142 VS 143

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.2 bits (189), Expect = 3e-17
 Identities = 41/253 (16%), Positives = 84/253 (33%), Gaps = 57/253 (22%)

Query: 23  INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVL 82
           +  +R  + + LGEG F  V L +                   D    +     A+K + 
Sbjct: 10  LPRDRLVLGKPLGEGAFGQVVLAEAIGL---------------DKDKPNRVTKVAVKMLK 54

Query: 83  IQNNEQ--LEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDG 140
               E+   +++ E   +  +  H+N++ LL             +     Y++      G
Sbjct: 55  SDATEKDLSDLISEMEMMKMIGKHKNIINLLGA----------CTQDGPLYVIVEYASKG 104

Query: 141 TLLDHAKVM------------QTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVK 188
            L ++ +                 +E  S+ D++   YQ+  G++++ S      H D+ 
Sbjct: 105 NLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLAS--KKCIHRDLA 162

Query: 189 PGNILITCRKGQPPLAILMDFGSARPAQSKF---------------ALGQRRYSCRNGLL 233
             N+L+T       +A                              AL  R Y+ ++ + 
Sbjct: 163 ARNVLVT-EDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVW 221

Query: 234 SIVLHLSELLSCG 246
           S  + L E+ + G
Sbjct: 222 SFGVLLWEIFTLG 234

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.8 bits (188), Expect = 5e-17
 Identities = 41/242 (16%), Positives = 80/242 (33%), Gaps = 37/242 (15%)

Query: 24  NENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLI 83
            + +Y  + ++GEG +  V+  ++        A       +K            ++    
Sbjct: 5   ADQQYECVAEIGEGAYGKVFKARDLKNGGRFVA-------LK-----------RVRVQTG 46

Query: 84  QNNEQLEMVRE--EIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGT 141
           +    L  +RE   +R    F H N++ L D   +        + +     L   H+D  
Sbjct: 47  EEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTV------SRTDRETKLTLVFEHVDQD 100

Query: 142 LLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQP 201
           L  +  + +  +    T  +  + +Q+  GL  +HS      H D+KP NIL+T      
Sbjct: 101 LTTY--LDKVPEPGVPTETIKDMMFQLLRGLDFLHSH--RVVHRDLKPQNILVTSSGQIK 156

Query: 202 PLAILMDFGSARPAQSKFALGQRRYSCRNGLLSIVL-HLSELLSCGTVRVIQILMRELMF 260
                +    +        +    Y     LL        +L S G       +  E+  
Sbjct: 157 LADFGLARIYSFQMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVG------CIFAEMFR 210

Query: 261 GR 262
            +
Sbjct: 211 RK 212

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.3 bits (187), Expect = 8e-17
 Identities = 40/241 (16%), Positives = 79/241 (32%), Gaps = 46/241 (19%)

Query: 26  NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKV---L 82
             + + + LG+G F  V+L +                          +  +A+K +   +
Sbjct: 2   EDFILHKMLGKGSFGKVFLAE----------------------FKKTNQFFAIKALKKDV 39

Query: 83  IQNNEQLEMVREEIRV-SSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGT 141
           +  ++ +E    E RV S  + H  L  +                K   + +      G 
Sbjct: 40  VLMDDDVECTMVEKRVLSLAWEHPFLTHMFCT----------FQTKENLFFVMEYLNGGD 89

Query: 142 LLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQP 201
           L+ H +        F  S       +I  GL+ +H       + D+K  NIL+  + G  
Sbjct: 90  LMYHIQ----SCHKFDLSRATFYAAEIILGLQFLH--SKGIVYRDLKLDNILLD-KDGHI 142

Query: 202 PLAILMDFGSARPAQSKFALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMFG 261
            +A   DFG  +      A         + +   +L   +           +L+ E++ G
Sbjct: 143 KIA---DFGMCKENMLGDAKTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIG 199

Query: 262 R 262
           +
Sbjct: 200 Q 200

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} Length = 348

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.5 bits (187), Expect = 1e-16
 Identities = 38/181 (20%), Positives = 62/181 (34%), Gaps = 36/181 (19%)

Query: 18  GGDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYA 77
              +W    RY+ L  +G G +  V                                  A
Sbjct: 10  NKTIWEVPERYQNLSPVGSGAYGSVCAAF----------------------DTKTGLRVA 47

Query: 78  MKKV--LIQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFP 135
           +KK+    Q+    +    E+R+     H N++ LLD            S +    +   
Sbjct: 48  VKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTP------ARSLEEFNDVYLV 101

Query: 136 VHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILIT 195
            HL G  L++      K +  +   V  + YQI  GLK++HS      H D+KP N+ + 
Sbjct: 102 THLMGADLNN----IVKCQKLTDDHVQFLIYQILRGLKYIHS--ADIIHRDLKPSNLAVN 155

Query: 196 C 196
            
Sbjct: 156 E 156

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} Length = 355

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.8 bits (185), Expect = 2e-16
 Identities = 42/204 (20%), Positives = 73/204 (35%), Gaps = 41/204 (20%)

Query: 12  YDSVNGGGDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLS 71
           + SV  G   +    RY+ L+ +G G    V                             
Sbjct: 3   FYSVEVGDSTFTVLKRYQNLKPIGSGAQGIVCAAY----------------------DAV 40

Query: 72  DDGTYAMKKVL--IQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHE 129
            D   A+KK+    QN    +    E+ +    +H+N++ LL+         Q+   + +
Sbjct: 41  LDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFT-----PQKTLEEFQ 95

Query: 130 AYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKP 189
              L    +D  L    ++    +       +  + YQ+  G+KH+HS      H D+KP
Sbjct: 96  DVYLVMELMDANLCQVIQMELDHER------MSYLLYQMLCGIKHLHS--AGIIHRDLKP 147

Query: 190 GNILITCRKGQPPLAILMDFGSAR 213
            NI++            +DFG AR
Sbjct: 148 SNIVVKSDCTLKI----LDFGLAR 167

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.6 bits (185), Expect = 2e-16
 Identities = 33/192 (17%), Positives = 69/192 (35%), Gaps = 39/192 (20%)

Query: 23  INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVL 82
           + E  ++ ++ LG G F  VY               G   K+            A+K++ 
Sbjct: 6   LKETEFKKIKVLGSGAFGTVYKGLWIPE--------GEKVKIP----------VAIKELR 47

Query: 83  IQNNEQ-LEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGT 141
              + +  + + +E  V +   + ++  LL                    L+  +   G 
Sbjct: 48  EATSPKANKEILDEAYVMASVDNPHVCRLLGI-----------CLTSTVQLITQLMPFGC 96

Query: 142 LLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQP 201
           LLD+   ++  K+   +  +L    QI  G+ ++   +    H D+   N+L+   +   
Sbjct: 97  LLDY---VREHKDNIGSQYLLNWCVQIAKGMNYLE--DRRLVHRDLAARNVLVKTPQ--- 148

Query: 202 PLAILMDFGSAR 213
               + DFG A+
Sbjct: 149 -HVKITDFGLAK 159

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 75.2 bits (184), Expect = 2e-16
 Identities = 31/192 (16%), Positives = 63/192 (32%), Gaps = 39/192 (20%)

Query: 23  INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVL 82
           I+ +  +I + +G G F  V      +                           A+K + 
Sbjct: 23  IDISCVKIEQVIGAGEFGEVCSGHLKLPGKREIF-------------------VAIKTLK 63

Query: 83  IQNNEQ-LEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGT 141
               E+       E  +   F H N++ L              +      ++     +G+
Sbjct: 64  SGYTEKQRRDFLSEASIMGQFDHPNVIHLEGV----------VTKSTPVMIITEFMENGS 113

Query: 142 LLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQP 201
           L      ++     F+   ++ +   I AG+K++   +  Y H D+   NIL+       
Sbjct: 114 LDSF---LRQNDGQFTVIQLVGMLRGIAAGMKYLA--DMNYVHRDLAARNILVNSNL--- 165

Query: 202 PLAILMDFGSAR 213
            +  + DFG +R
Sbjct: 166 -VCKVSDFGLSR 176

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 75.9 bits (186), Expect = 2e-16
 Identities = 50/245 (20%), Positives = 84/245 (34%), Gaps = 53/245 (21%)

Query: 26  NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKV---L 82
           N + + R +G GGF  VY  +                             YAMK +    
Sbjct: 4   NDFSVHRIIGRGGFGEVYGCR----------------------KADTGKMYAMKCLDKKR 41

Query: 83  IQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTL 142
           I+  +   +   E  + SL S        D   I V  +       +   +  +   G L
Sbjct: 42  IKMKQGETLALNERIMLSLVST------GDCPFI-VCMSYAFHTPDKLSFILDLMNGGDL 94

Query: 143 LDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPP 202
             H      +   FS +D+     +I  GL+HMH+      + D+KP NIL+    G   
Sbjct: 95  HYHLS----QHGVFSEADMRFYAAEIILGLEHMHN--RFVVYRDLKPANILLD-EHGHVR 147

Query: 203 LAILMDFGSAR---PAQSKFALGQRRYSCRNGLLSIVLH--LSELLSCGTVRVIQILMRE 257
           ++   D G A      +   ++G   Y     L   V +   ++  S G       ++ +
Sbjct: 148 IS---DLGLACDFSKKKPHASVGTHGYMAPEVLQKGVAYDSSADWFSLG------CMLFK 198

Query: 258 LMFGR 262
           L+ G 
Sbjct: 199 LLRGH 203

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

 Score = 74.2 bits (181), Expect = 4e-16
 Identities = 46/240 (19%), Positives = 81/240 (33%), Gaps = 46/240 (19%)

Query: 26  NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN 85
            +Y  L ++GEG +  VY  +                        +   T+A+KK+ ++ 
Sbjct: 2   EKYHGLEKIGEGTYGVVYKAQ-----------------------NNYGETFALKKIRLEK 38

Query: 86  NEQ--LEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLL 143
            ++        EI +     H N++ L D                +  +L   HLD  L 
Sbjct: 39  EDEGIPSTTIREISILKELKHSNIVKLYDV-----------IHTKKRLVLVFEHLDQDLK 87

Query: 144 DHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPL 203
                +   +    +        Q+  G+ + H       H D+KP N+LI  R+G+  +
Sbjct: 88  KL---LDVCEGGLESVTAKSFLLQLLNGIAYCHD--RRVLHRDLKPQNLLIN-REGELKI 141

Query: 204 AILMDFGSARPAQSKFALGQRRYSCRNGLLSIVLHLSELLSCGT-VRVIQILMRELMFGR 262
           A   DFG AR                      VL  S+  S    +  +  +  E++ G 
Sbjct: 142 A---DFGLARAFGIPVRKYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGT 198

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 362

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 73.1 bits (178), Expect = 1e-15
 Identities = 35/193 (18%), Positives = 66/193 (34%), Gaps = 27/193 (13%)

Query: 19  GDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAM 78
           G+ + +  RY ++R+LG G F+ V+L K                       + ++   AM
Sbjct: 7   GEPYKD-ARYILVRKLGWGHFSTVWLAK----------------------DMVNNTHVAM 43

Query: 79  KKVLIQNNEQLEMVREEIRVSSLFSHRNLLPL--LDHAIIAVKANQEGSWKHEAYLLFPV 136
            K++  +    E   +EI++    +  +      +    I    +           +  V
Sbjct: 44  -KIVRGDKVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNHKGPNGVHVVMV 102

Query: 137 HLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITC 196
                    A + + +        V QI  Q+  GL +MH       H D+KP N+L+  
Sbjct: 103 FEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHR-RCGIIHTDIKPENVLMEI 161

Query: 197 RKGQPPLAILMDF 209
                 L  +   
Sbjct: 162 VDSPENLIQIKIA 174

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.1 bits (176), Expect = 2e-15
 Identities = 32/212 (15%), Positives = 70/212 (33%), Gaps = 42/212 (19%)

Query: 20  DVWINENRYRIL-RQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAM 78
            +++  +   I   +LG G F  V      +                           A+
Sbjct: 2   KLFLKRDNLLIADIELGCGNFGSVRQGVYRMR--------------------KKQIDVAI 41

Query: 79  KKV-LIQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVH 137
           K +         E +  E ++     +  ++ L+                    L+  + 
Sbjct: 42  KVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGV-----------CQAEALMLVMEMA 90

Query: 138 LDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCR 197
             G L      +  K+E    S+V ++ +Q+  G+K++   E  + H D+   N+L+  R
Sbjct: 91  GGGPLHKF---LVGKREEIPVSNVAELLHQVSMGMKYLE--EKNFVHRDLAARNVLLVNR 145

Query: 198 KGQPPLAILMDFGSARPAQSKFALGQRRYSCR 229
                 A + DFG ++   +  +    R + +
Sbjct: 146 ----HYAKISDFGLSKALGADDSYYTARSAGK 173

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.1 bits (176), Expect = 2e-15
 Identities = 34/203 (16%), Positives = 62/203 (30%), Gaps = 46/203 (22%)

Query: 23  INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVL 82
           ++ N  +    +GEG F  V   +         A       +K              K  
Sbjct: 7   LDWNDIKFQDVIGEGNFGQVLKARIKKDGLRMDA------AIK------------RMKEY 48

Query: 83  IQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTL 142
              ++  +   E   +  L  H N++ LL               +   YL       G L
Sbjct: 49  ASKDDHRDFAGELEVLCKLGHHPNIINLLGA----------CEHRGYLYLAIEYAPHGNL 98

Query: 143 LDH------------AKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPG 190
           LD               +  +     S+  +L     +  G+ ++      + H D+   
Sbjct: 99  LDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQ--KQFIHRDLAAR 156

Query: 191 NILITCRKGQPPLAILMDFGSAR 213
           NIL+     +  +A + DFG +R
Sbjct: 157 NILVG----ENYVAKIADFGLSR 175

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.8 bits (175), Expect = 3e-15
 Identities = 29/184 (15%), Positives = 62/184 (33%), Gaps = 37/184 (20%)

Query: 20  DVW-INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAM 78
           D W +   +  + R+LG+G F  VY                     K       +   A+
Sbjct: 13  DEWEVAREKITMSRELGQGSFGMVYEGVA-----------------KGVVKDEPETRVAI 55

Query: 79  KKV-LIQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVH 137
           K V    +  +      E  V   F+  +++ LL             S      ++  + 
Sbjct: 56  KTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGV----------VSQGQPTLVIMELM 105

Query: 138 LDGTLLDHAKVMQTKKEF------FSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGN 191
             G L  + + ++            S S ++Q+  +I  G+ ++++    + H D+   N
Sbjct: 106 TRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNA--NKFVHRDLAARN 163

Query: 192 ILIT 195
            ++ 
Sbjct: 164 CMVA 167

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 71.8 bits (175), Expect = 3e-15
 Identities = 34/206 (16%), Positives = 66/206 (32%), Gaps = 34/206 (16%)

Query: 23  INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVL 82
              N    +R +GEG F  V+  +                              A+K + 
Sbjct: 10  YPRNNIEYVRDIGEGAFGRVFQARA-----------------PGLLPYEPFTMVAVKMLK 52

Query: 83  IQNNEQLE-MVREEIRVSSLFSHRNLLPLL------DHAIIAVKANQEGSW----KHEAY 131
            + +  ++   + E  + + F + N++ LL          +  +    G      +  + 
Sbjct: 53  EEASADMQADFQREAALMAEFDNPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLRSMSP 112

Query: 132 LLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGN 191
                     L   A+V        S ++ L I  Q+ AG+ ++      + H D+   N
Sbjct: 113 HTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSE--RKFVHRDLATRN 170

Query: 192 ILITCRKGQPPLAILMDFGSARPAQS 217
            L+        +A   DFG +R   S
Sbjct: 171 CLVG-ENMVVKIA---DFGLSRNIYS 192

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.8 bits (175), Expect = 4e-15
 Identities = 45/247 (18%), Positives = 84/247 (34%), Gaps = 45/247 (18%)

Query: 23  INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKV- 81
           +    + +L+ LG G +  V+L                   V+  S       YAMK + 
Sbjct: 21  VGIENFELLKVLGTGAYGKVFL-------------------VRKISGHDTGKLYAMKVLK 61

Query: 82  ---LIQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHL 138
              ++Q  +  E  R E +V         L  L +A            + + +L+     
Sbjct: 62  KATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQ---------TETKLHLILDYIN 112

Query: 139 DGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRK 198
            G L  H      ++E F+  +V     +I   L+H+H  +    + D+K  NIL+    
Sbjct: 113 GGELFTHLS----QRERFTEHEVQIYVGEIVLALEHLH--KLGIIYRDIKLENILLDSNG 166

Query: 199 GQPPLAILMDFGSARPAQSKFALGQRRYSCRNGLLSIVLHLSELLSCGT---VRVIQILM 255
                 +L DFG ++   +        +      ++  +                + +LM
Sbjct: 167 H----VVLTDFGLSKEFVADETERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLM 222

Query: 256 RELMFGR 262
            EL+ G 
Sbjct: 223 YELLTGA 229

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.8 bits (172), Expect = 5e-15
 Identities = 41/240 (17%), Positives = 69/240 (28%), Gaps = 45/240 (18%)

Query: 26  NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN 85
            +Y  L ++GEG +  V+  K                      +       A+K+V + +
Sbjct: 2   QKYEKLEKIGEGTYGTVFKAK----------------------NRETHEIVALKRVRLDD 39

Query: 86  NEQ--LEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLL 143
           +++        EI +     H+N++ L D                +  L+F         
Sbjct: 40  DDEGVPSSALREICLLKELKHKNIVRLHDV----------LHSDKKLTLVFEFCDQDLKK 89

Query: 144 DHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPL 203
                            V    +Q+  GL   H       H D+KP N+LI         
Sbjct: 90  YFDSCNGDLDP----EIVKSFLFQLLKGLGFCH--SRNVLHRDLKPQNLLINRNGEL--- 140

Query: 204 AILMDFGSARPAQSKFALGQRRYSCRNGLLSIVLHLSELLSCGT-VRVIQILMRELMFGR 262
             L +FG AR                      VL  ++L S    +     +  EL    
Sbjct: 141 -KLANFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAG 199

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.6 bits (172), Expect = 6e-15
 Identities = 36/192 (18%), Positives = 64/192 (33%), Gaps = 38/192 (19%)

Query: 23  INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVL 82
           I+ +     + +G G F  VY      ++                         A+K + 
Sbjct: 4   IHPSCVTRQKVIGAGEFGEVYKGMLKTSSGKKEV------------------PVAIKTLK 45

Query: 83  IQNNE-QLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGT 141
               E Q      E  +   FSH N++ L              S      ++     +G 
Sbjct: 46  AGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGV----------ISKYKPMMIITEYMENGA 95

Query: 142 LLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQP 201
           L      ++ K   FS   ++ +   I AG+K++ +    Y H D+   NIL+       
Sbjct: 96  LDKF---LREKDGEFSVLQLVGMLRGIAAGMKYLAN--MNYVHRDLAARNILVN-SNLVC 149

Query: 202 PLAILMDFGSAR 213
            ++   DFG +R
Sbjct: 150 KVS---DFGLSR 158

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.8 bits (167), Expect = 3e-14
 Identities = 31/208 (14%), Positives = 66/208 (31%), Gaps = 45/208 (21%)

Query: 20  DVW-INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAM 78
             W    +R ++ + LG G F  V                            +   T A+
Sbjct: 6   SKWEFPRDRLKLGKPLGRGAFGQVIEADA-----------------FGIDKTATCRTVAV 48

Query: 79  KKV-LIQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVH 137
           K +     + +   +  E+++     H   +  L  A                 ++    
Sbjct: 49  KMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACT--------KPGGPLMVIVEFC 100

Query: 138 LDGTLLDHAKVMQTK------------KEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHN 185
             G L  + +  + +            K+F +   ++   +Q+  G++ + S      H 
Sbjct: 101 KFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLAS--RKCIHR 158

Query: 186 DVKPGNILITCRKGQPPLAILMDFGSAR 213
           D+   NIL++    +  +  + DFG AR
Sbjct: 159 DLAARNILLS----EKNVVKICDFGLAR 182

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.8 bits (165), Expect = 6e-14
 Identities = 26/212 (12%), Positives = 74/212 (34%), Gaps = 44/212 (20%)

Query: 21  VWINENRYRI-LRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMK 79
           V+++     +  ++LG G F  V      +                         T A+K
Sbjct: 1   VYLDRKLLTLEDKELGSGNFGTVKKGYYQMK--------------------KVVKTVAVK 40

Query: 80  KV--LIQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVH 137
            +     +    + +  E  V     +  ++ ++            G  + E+++L    
Sbjct: 41  ILKNEANDPALKDELLAEANVMQQLDNPYIVRMI------------GICEAESWMLVMEM 88

Query: 138 LDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCR 197
            +   L+       +       +++++ +Q+  G+K++   E  + H D+   N+L+   
Sbjct: 89  AELGPLNK---YLQQNRHVKDKNIIELVHQVSMGMKYLE--ESNFVHRDLAARNVLLV-T 142

Query: 198 KGQPPLAILMDFGSARPAQSKFALGQRRYSCR 229
           +    ++   DFG ++  ++     + +   +
Sbjct: 143 QHYAKIS---DFGLSKALRADENYYKAQTHGK 171

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.6 bits (164), Expect = 9e-14
 Identities = 44/239 (18%), Positives = 78/239 (32%), Gaps = 48/239 (20%)

Query: 30  ILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQ- 88
            L  LGEG FA VY  +                        + +   A+KK+ + +  + 
Sbjct: 2   KLDFLGEGQFATVYKAR----------------------DKNTNQIVAIKKIKLGHRSEA 39

Query: 89  ----LEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLD 144
                     EI++    SH N++ LLD              K    L+F        + 
Sbjct: 40  KDGINRTALREIKLLQELSHPNIIGLLDAFG----------HKSNISLVFDFMETDLEVI 89

Query: 145 HAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLA 204
                       + S +         GL+++H       H D+KP N+L+     +  + 
Sbjct: 90  IKD----NSLVLTPSHIKAYMLMTLQGLEYLHQ--HWILHRDLKPNNLLLD----ENGVL 139

Query: 205 ILMDFGSARPAQSKFALGQRRYSCRNGLLSIVLHLSELLSCGT-VRVIQILMRELMFGR 262
            L DFG A+   S       +   R      +L  + +   G  +  +  ++ EL+   
Sbjct: 140 KLADFGLAKSFGSPNRAYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRV 198

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.0 bits (160), Expect = 3e-13
 Identities = 40/239 (16%), Positives = 67/239 (28%), Gaps = 44/239 (18%)

Query: 27  RYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNN 86
            ++ + ++GEG +  VY  +                      +       A+KK+ +   
Sbjct: 3   NFQKVEKIGEGTYGVVYKAR----------------------NKLTGEVVALKKIRLDTE 40

Query: 87  --EQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLD 144
                     EI +    +H N++ LLD                E  L          L 
Sbjct: 41  TEGVPSTAIREISLLKELNHPNIVKLLDV------------IHTENKLYLVFEFLHQDLK 88

Query: 145 HAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLA 204
                           +    +Q+  GL   HS      H D+KP N+LI          
Sbjct: 89  KFMDASALTG-IPLPLIKSYLFQLLQGLAFCHS--HRVLHRDLKPQNLLIN----TEGAI 141

Query: 205 ILMDFGSARPAQSKFALGQRRYSCRNGLLSIVLHLSELLSCGT-VRVIQILMRELMFGR 262
            L DFG AR                      +L   +  S    +  +  +  E++  R
Sbjct: 142 KLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRR 200

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.8 bits (157), Expect = 7e-13
 Identities = 32/196 (16%), Positives = 62/196 (31%), Gaps = 38/196 (19%)

Query: 24  NENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKV-L 82
           +         +G G F  VY                         +       A+K +  
Sbjct: 25  SSLIVHFNEVIGRGHFGCVY-------------------HGTLLDNDGKKIHCAVKSLNR 65

Query: 83  IQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTL 142
           I +  ++     E  +   FSH N+L LL   +           +    ++ P    G L
Sbjct: 66  ITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICL---------RSEGSPLVVLPYMKHGDL 116

Query: 143 LDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPP 202
            +    ++ +    +  D++    Q+  G+K +      + H D+   N ++     +  
Sbjct: 117 RNF---IRNETHNPTVKDLIGFGLQVAKGMKFLA--SKKFVHRDLAARNCMLD----EKF 167

Query: 203 LAILMDFGSARPAQSK 218
              + DFG AR    K
Sbjct: 168 TVKVADFGLARDMYDK 183

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]} Length = 191

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 57.5 bits (138), Expect = 9e-11
 Identities = 26/203 (12%), Positives = 52/203 (25%), Gaps = 37/203 (18%)

Query: 28  YRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNE 87
             I + +GEG  + V+        +          K     H S       KKV  + + 
Sbjct: 2   DAIGKLMGEGKESAVFNCYSEKFGE-------CVVKFHKVGHTS------FKKVKEKRDY 48

Query: 88  QLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAK 147
                      S+    R L  L   A+                       +G  +    
Sbjct: 49  GDLHFSVLAIRSARNEFRALQKLQGLAVP-----------------KVYAWEGNAVLMEL 91

Query: 148 VMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILM 207
           +   +       +  ++   I   +   +       H D+   N+L++          ++
Sbjct: 92  IDAKELYRVRVENPDEVLDMILEEVAKFYH--RGIVHGDLSQYNVLVSEEG-----IWII 144

Query: 208 DFGSARPAQSKFALGQRRYSCRN 230
           DF  +     +          RN
Sbjct: 145 DFPQSVEVGEEGWREILERDVRN 167

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	262
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	100.0
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	100.0
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2java1	269	Serine/threonine-protein kinase Nek2 {Human (Homo	100.0
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	100.0
d1t4ha_	270	Protein kinase wnk1 {Human (Homo sapiens) [TaxId:	100.0
d1s9ja_	322	Dual specificity mitogen-activated protein kinase	100.0
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	100.0
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	100.0
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	100.0
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	100.0
d1jksa_	293	Death-associated protein kinase, Dap {Human (Homo	100.0
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	100.0
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	100.0
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	100.0
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	100.0
d1phka_	277	gamma-subunit of glycogen phosphorylase kinase (Ph	100.0
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	100.0
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	100.0
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	100.0
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	100.0
d1tkia_	321	Titin, kinase domain {Human (Homo sapiens) [TaxId:	100.0
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	100.0
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	100.0
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	100.0
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	100.0
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	100.0
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	100.0
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	100.0
d1gz8a_	298	Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T	100.0
d2ozaa1	335	MAP kinase activated protein kinase 2, mapkap2 {Hu	100.0
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	100.0
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	100.0
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	100.0
d1xwsa_	273	Proto-oncogene serine/threonine-protein kinase Pim	100.0
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	100.0
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	100.0
d1ua2a_	299	Cell division protein kinase 7, CDK7 {Human (Homo	100.0
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	100.0
d1ob3a_	286	Cyclin-dependent PK, CDK2 {(Plasmodium falciparum)	100.0
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	100.0
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1pmea_	345	MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606	100.0
d1cm8a_	346	MAP kinase p38-gamma {Human (Homo sapiens) [TaxId:	100.0
d1unla_	292	Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T	100.0
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	100.0
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	100.0
d1q5ka_	350	Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho	100.0
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	100.0
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	100.0
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	100.0
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	100.0
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	100.0
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	100.0
d1blxa_	305	Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T	100.0
d2gfsa1	348	MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]	100.0
d3blha1	318	Cell division protein kinase 9, CDK9 {Human (Homo	100.0
d1csna_	293	Casein kinase-1, CK1 {Fission yeast (Schizosacchar	100.0
d1ckia_	299	Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax	100.0
d2b1pa1	355	c-jun N-terminal kinase (jnk3s) {Human (Homo sapie	100.0
d1q8ya_	362	Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T	99.96
d1zara2	191	Rio2 serine protein kinase C-terminal domain {Arch	99.92
d1j7la_	263	Type IIIa 3',5"-aminoglycoside phosphotransferase	98.52
d2pula1	392	Methylthioribose kinase MtnK {Bacillus subtilis [T	98.13
d1nd4a_	255	Aminoglycoside 3'-phosphotransferase IIa (Kanamyci	97.62
d1zyla1	325	RdoA {Escherichia coli [TaxId: 562]}	96.59
d1nw1a_	395	Choline kinase {Caenorhabditis elegans [TaxId: 623	96.45
d2ppqa1	316	Homoserine kinase ThrB {Agrobacterium tumefaciens	95.16
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	90.56
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	89.74
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	89.03
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	88.83
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	88.46
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	88.25
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	88.24
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	87.76
d1s9ja_	322	Dual specificity mitogen-activated protein kinase	87.51
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	87.05
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	86.94
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	86.65
d2java1	269	Serine/threonine-protein kinase Nek2 {Human (Homo	86.01
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	85.75
d2ozaa1	335	MAP kinase activated protein kinase 2, mapkap2 {Hu	85.67
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	85.54
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	85.51
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	85.45
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	85.19
d1blxa_	305	Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T	84.78
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	84.2
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	84.17
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	84.09
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	83.85
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	83.78
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	83.76
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	83.59
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	82.78
d1t4ha_	270	Protein kinase wnk1 {Human (Homo sapiens) [TaxId:	82.35
d1jksa_	293	Death-associated protein kinase, Dap {Human (Homo	82.04
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	82.04
d1ua2a_	299	Cell division protein kinase 7, CDK7 {Human (Homo	81.63
d1q5ka_	350	Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho	81.61
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	81.43
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	81.28
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	81.05
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	81.05
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	80.77

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.3e-44  Score=287.27  Aligned_cols=192  Identities=24%  Similarity=0.365  Sum_probs=157.2

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc-hHHHHHHHHHHHHhhhCC
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN-NEQLEMVREEIRVSSLFS  103 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~-~~~~~~~~~E~~~l~~l~  103 (262)
                      .++|++.+.||+|+||.||+|++..+++                      .||+|++.... ....+.+.+|+.+++.++
T Consensus         4 ~~dy~~~~~lG~G~fg~V~~~~~~~~~~----------------------~vAiK~i~~~~~~~~~~~~~~Ei~~l~~l~   61 (271)
T d1nvra_           4 VEDWDLVQTLGEGAYGEVQLAVNRVTEE----------------------AVAVKIVDMKRAVDCPENIKKEICINKMLN   61 (271)
T ss_dssp             TTEEEEEEEEEEETTEEEEEEEETTTCC----------------------EEEEEEEECC-------CHHHHHHHHHTCC
T ss_pred             CcceEEEEEEecCcCeEEEEEEECCCCC----------------------EEEEEEEehhhcchHHHHHHHHHHHHHhCC
Confidence            4689999999999999999999987755                      57777765432 223456889999999999


Q ss_pred             CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCee
Q 024842          104 HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYA  183 (262)
Q Consensus       104 h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~iv  183 (262)
                      ||||+++++++          ......|++|||+.+|+|.+++.    ....+++..++.++.|++.||+|||+++  |+
T Consensus        62 HpnIv~~~~~~----------~~~~~~~ivmEy~~gg~L~~~l~----~~~~l~e~~~~~i~~qi~~al~ylH~~~--Ii  125 (271)
T d1nvra_          62 HENVVKFYGHR----------REGNIQYLFLEYCSGGELFDRIE----PDIGMPEPDAQRFFHQLMAGVVYLHGIG--IT  125 (271)
T ss_dssp             CTTBCCEEEEE----------EETTEEEEEEECCTTEEGGGGSB----TTTBCCHHHHHHHHHHHHHHHHHHHHTT--EE
T ss_pred             CCCEeeEeeee----------ccCceeEEEEeccCCCcHHHHHh----cCCCCCHHHHHHHHHHHHHHHHHHHHcC--Cc
Confidence            99999999998          34678999999999999999885    4556999999999999999999999999  99


Q ss_pred             ecCCCCCcEEEecCCCCCCceEEeeccceeecccc-------CccCcccCCcccchhhhhhhhhhhhhcCcccchheehe
Q 024842          184 HNDVKPGNILITCRKGQPPLAILMDFGSARPAQSK-------FALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMR  256 (262)
Q Consensus       184 H~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~-------~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~  256 (262)
                      ||||||+|||++.++    .+||+|||+|......       ...|++.|++||-+..-.+.    ....||||+|+++|
T Consensus       126 HrDiKp~NILl~~~~----~~KL~DFG~a~~~~~~~~~~~~~~~~GT~~Y~APE~~~~~~~~----~~~~DiwSlGvily  197 (271)
T d1nvra_         126 HRDIKPENLLLDERD----NLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFH----AEPVDVWSCGIVLT  197 (271)
T ss_dssp             CSCCCGGGEEECTTC----CEEECCCTTCEECEETTEECCBCCCCSCGGGSCTHHHHCSSBC----HHHHHHHHHHHHHH
T ss_pred             cCcccHHHEEECCCC----CEEEccchhheeeccCCccccccceeeCcCccCHhHhcCCCCC----CCceeeeHhHHHHH
Confidence            999999999998776    6999999999875422       23588899999876443221    11358999999999


Q ss_pred             ecccCC
Q 024842          257 ELMFGR  262 (262)
Q Consensus       257 ~l~~G~  262 (262)
                      ||++|+
T Consensus       198 eml~G~  203 (271)
T d1nvra_         198 AMLAGE  203 (271)
T ss_dssp             HHHHSS
T ss_pred             HHHhCC
Confidence            999985

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.9e-44  Score=287.95  Aligned_cols=197  Identities=22%  Similarity=0.261  Sum_probs=160.2

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCCC
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSH  104 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~h  104 (262)
                      .+.|++.+.||+|+||.||+|++..+++                      .||+|++........+.+.+|+++++.++|
T Consensus        11 ~d~Y~i~~~iG~G~fg~Vy~~~~~~~~~----------------------~vAvK~i~~~~~~~~~~~~~E~~il~~l~H   68 (288)
T d2jfla1          11 EDFWEIIGELGDGAFGKVYKAQNKETSV----------------------LAAAKVIDTKSEEELEDYMVEIDILASCDH   68 (288)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTCC----------------------EEEEEEEECSSSGGGGGTHHHHHHHHHCCC
T ss_pred             ccCeEEeEEEeeCCCcEEEEEEECCCCe----------------------EEEEEEECcCCHHHHHHHHHHHHHHHhCCC
Confidence            3579999999999999999999987755                      577777765555556778899999999999


Q ss_pred             CCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeee
Q 024842          105 RNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAH  184 (262)
Q Consensus       105 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH  184 (262)
                      |||+++++++.          ..+..+++|||+.+|+|.+++..   ...++++..+..++.||+.||.|||+++  |+|
T Consensus        69 pnIv~l~~~~~----------~~~~~~lvmEy~~~g~L~~~~~~---~~~~l~e~~~~~i~~qi~~gL~ylH~~~--ivH  133 (288)
T d2jfla1          69 PNIVKLLDAFY----------YENNLWILIEFCAGGAVDAVMLE---LERPLTESQIQVVCKQTLDALNYLHDNK--IIH  133 (288)
T ss_dssp             TTBCCEEEEEE----------ETTEEEEEEECCTTEEHHHHHHH---HTSCCCHHHHHHHHHHHHHHHHHHHHTT--EEC
T ss_pred             CCCCeEEEEEe----------eCCeEEEEEecCCCCcHHHHHHh---cCCCCCHHHHHHHHHHHHHHHHHHHHCC--EEE
Confidence            99999999883          36779999999999999988652   3456999999999999999999999999  999


Q ss_pred             cCCCCCcEEEecCCCCCCceEEeeccceeeccc-----cCccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecc
Q 024842          185 NDVKPGNILITCRKGQPPLAILMDFGSARPAQS-----KFALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELM  259 (262)
Q Consensus       185 ~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~-----~~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~  259 (262)
                      |||||+|||++.++    .+||+|||+|.....     ....+++.|++||-+..............||||+|+++|+|+
T Consensus       134 rDiKp~NIll~~~~----~~Kl~DFG~a~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~y~~k~DiwSlGvilyeml  209 (288)
T d2jfla1         134 RDLKAGNILFTLDG----DIKLADFGVSAKNTRTIQRRDSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMA  209 (288)
T ss_dssp             CCCSGGGEEECTTS----CEEECCCTTCEECHHHHHHHTCCCSCCTTCCHHHHTTCSTTTSSTTTHHHHHHHHHHHHHHH
T ss_pred             eecChhheeECCCC----CEEEEechhhhccCCCcccccccccccccCCHHHHhhcccCCCCCChhhhHHHHHHHHHHHh
Confidence            99999999998777    699999999986543     234688889988865322111111223468888888888888


Q ss_pred             cCC
Q 024842          260 FGR  262 (262)
Q Consensus       260 ~G~  262 (262)
                      +|+
T Consensus       210 tg~  212 (288)
T d2jfla1         210 EIE  212 (288)
T ss_dssp             HSS
T ss_pred             hCC
Confidence            885

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-43  Score=286.11  Aligned_cols=190  Identities=19%  Similarity=0.297  Sum_probs=158.2

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCCC
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSH  104 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~h  104 (262)
                      .++|++.+.||+|+||.||+|++..+++                      .||+|++........+.+.+|+.+++.++|
T Consensus        19 ~~~Y~~~~~iG~G~fg~Vy~a~~~~~~~----------------------~vAvK~~~~~~~~~~~~~~~E~~il~~l~H   76 (293)
T d1yhwa1          19 KKKYTRFEKIGQGASGTVYTAMDVATGQ----------------------EVAIRQMNLQQQPKKELIINEILVMRENKN   76 (293)
T ss_dssp             TTTBCSCEECCCSSSCEEEEEEBTTTCC----------------------EEEEEEEEGGGCSCHHHHHHHHHHHHHCCC
T ss_pred             ccccEEEEEEecCcCcEEEEEEECCCCC----------------------EEEEEEEecccChHHHHHHHHHHHHHhCCC
Confidence            4589999999999999999999887655                      678887665544445778999999999999


Q ss_pred             CCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeee
Q 024842          105 RNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAH  184 (262)
Q Consensus       105 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH  184 (262)
                      |||+++++++.          .....|++|||+.+++|.+++.     ...+++..++.++.||+.||+|||++|  |+|
T Consensus        77 pnIv~~~~~~~----------~~~~~~ivmEy~~gg~L~~~~~-----~~~l~~~~~~~i~~qi~~aL~yLH~~~--iiH  139 (293)
T d1yhwa1          77 PNIVNYLDSYL----------VGDELWVVMEYLAGGSLTDVVT-----ETCMDEGQIAAVCRECLQALEFLHSNQ--VIH  139 (293)
T ss_dssp             TTBCCEEEEEE----------ETTEEEEEEECCTTCBHHHHHH-----HSCCCHHHHHHHHHHHHHHHHHHHHTT--EEC
T ss_pred             CCEeeEeEEEE----------ECCEEEEEEEecCCCcHHHHhh-----ccCCCHHHHHHHHHHHHHHHHHHHHCC--Ccc
Confidence            99999999983          3667999999999999998764     235999999999999999999999999  999


Q ss_pred             cCCCCCcEEEecCCCCCCceEEeeccceeeccccC-----ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecc
Q 024842          185 NDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELM  259 (262)
Q Consensus       185 ~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~  259 (262)
                      |||||+|||++.++    .+||+|||+|.......     ..+++.|.+||-+..-.+     ....||||+|+++|+|+
T Consensus       140 rDiKp~NILl~~~~----~vkl~DFG~a~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~-----~~~~DiwSlGvilyeml  210 (293)
T d1yhwa1         140 RDIKSDNILLGMDG----SVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAY-----GPKVDIWSLGIMAIEMI  210 (293)
T ss_dssp             CCCSGGGEEECTTC----CEEECCCTTCEECCSTTCCBCCCCSCGGGCCHHHHSSSCB-----CTHHHHHHHHHHHHHHH
T ss_pred             cCCcHHHeEECCCC----cEeeccchhheeeccccccccccccCCCccChhhhcCCCC-----CchhceehHhHHHHHHh
Confidence            99999999998776    69999999998765332     357888888886644322     22368888888888888


Q ss_pred             cCC
Q 024842          260 FGR  262 (262)
Q Consensus       260 ~G~  262 (262)
                      +|+
T Consensus       211 tG~  213 (293)
T d1yhwa1         211 EGE  213 (293)
T ss_dssp             HSS
T ss_pred             hCC
Confidence            885

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.5e-43  Score=281.27  Aligned_cols=199  Identities=18%  Similarity=0.282  Sum_probs=152.5

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc--chHHHHHHHHHHHHhhhC
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ--NNEQLEMVREEIRVSSLF  102 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~--~~~~~~~~~~E~~~l~~l  102 (262)
                      .++|++.+.||+|+||.||+|++..+++                      .||+|.+...  .....+.+.+|+.+++.+
T Consensus         3 ~edy~~~~~iG~G~fg~Vy~~~~~~~~~----------------------~vAvK~i~~~~~~~~~~~~~~~E~~il~~l   60 (269)
T d2java1           3 AEDYEVLYTIGTGSYGRCQKIRRKSDGK----------------------ILVWKELDYGSMTEAEKQMLVSEVNLLREL   60 (269)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCC----------------------EEEEEEECCTTSCHHHHHHHHHHHHHTTSC
T ss_pred             chhCEEeEEEecCCCeEEEEEEECCCCC----------------------EEEEEEEChhhCCHHHHHHHHHHHHHHHHC
Confidence            3689999999999999999999987765                      5777766543  344457789999999999


Q ss_pred             CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCC---
Q 024842          103 SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLE---  179 (262)
Q Consensus       103 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~---  179 (262)
                      +||||+++++++.        +......|++|||+.+|+|.+++......+..+++..++.++.|++.||.|||+.+   
T Consensus        61 ~HpnIv~~~~~~~--------~~~~~~~~ivmEy~~~g~L~~~i~~~~~~~~~l~e~~~~~i~~qi~~al~ylH~~~~~~  132 (269)
T d2java1          61 KHPNIVRYYDRII--------DRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGG  132 (269)
T ss_dssp             CCTTBCCEEEEEE--------C----CEEEEEECCTTEEHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHCC--
T ss_pred             CCCCEeeEEEEEE--------eCCCCEEEEEEecCCCCcHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            9999999999874        23355689999999999999998766656677999999999999999999999854   


Q ss_pred             CCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-----ccCcccCCcccchhhhhhhhhhhhhcCcccchhee
Q 024842          180 PPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQIL  254 (262)
Q Consensus       180 ~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~  254 (262)
                      .+|+||||||+|||++.++    .+||+|||+|.......     ..+++.|++||.+..-.+     ....||||+|++
T Consensus       133 ~~IiHrDiKp~NIll~~~~----~vkl~DFG~a~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~-----~~~~DIwSlGvi  203 (269)
T d2java1         133 HTVLHRDLKPANVFLDGKQ----NVKLGDFGLARILNHDTSFAKAFVGTPYYMSPEQMNRMSY-----NEKSDIWSLGCL  203 (269)
T ss_dssp             -------CCGGGEEECTTS----CEEECCHHHHHHC-----------CCCSCCCHHHHTTCCC-----CHHHHHHHHHHH
T ss_pred             CCEEeCcCchhhcCcCCCC----cEEEeeccceeecccCCCccccCCCCcccCCHHHHcCCCC-----ChHHHHHhhCHH
Confidence            2499999999999998776    69999999998765432     357888999887643322     124688888888


Q ss_pred             heecccCC
Q 024842          255 MRELMFGR  262 (262)
Q Consensus       255 ~~~l~~G~  262 (262)
                      +|||++|+
T Consensus       204 lyel~tg~  211 (269)
T d2java1         204 LYELCALM  211 (269)
T ss_dssp             HHHHHHSS
T ss_pred             HHHHhhCC
Confidence            88888885

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.5e-43  Score=279.60  Aligned_cols=191  Identities=23%  Similarity=0.294  Sum_probs=158.7

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc---chHHHHHHHHHHHHhhh
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ---NNEQLEMVREEIRVSSL  101 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~---~~~~~~~~~~E~~~l~~  101 (262)
                      -++|++.+.||+|+||.||+|++..+++                      .||+|++...   .....+.+.+|+.+++.
T Consensus         5 l~dy~i~~~iG~G~fg~Vy~~~~~~~~~----------------------~vAiK~i~~~~~~~~~~~~~~~~E~~il~~   62 (263)
T d2j4za1           5 LEDFEIGRPLGKGKFGNVYLAREKQSKF----------------------ILALKVLFKAQLEKAGVEHQLRREVEIQSH   62 (263)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCC----------------------EEEEEEEEHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             hhHeEEEEEEecCCCcEEEEEEECCCCc----------------------EEEEEEEchHHccChHHHHHHHHHHHHHHh
Confidence            3689999999999999999999987655                      5777765432   22334678899999999


Q ss_pred             CCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCC
Q 024842          102 FSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPP  181 (262)
Q Consensus       102 l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~  181 (262)
                      ++||||+++++++          ...+..|++|||+.+|+|.+++.    ....+++..++.++.||+.||+|||+++  
T Consensus        63 l~hpnIv~~~~~~----------~~~~~~~ivmEy~~~g~L~~~l~----~~~~l~e~~~~~i~~qi~~al~~lH~~~--  126 (263)
T d2j4za1          63 LRHPNILRLYGYF----------HDATRVYLILEYAPLGTVYRELQ----KLSKFDEQRTATYITELANALSYCHSKR--  126 (263)
T ss_dssp             CCCTTBCCEEEEE----------ECSSEEEEEEECCTTCBHHHHHH----HHSSCCHHHHHHHHHHHHHHHHHHHHTT--
T ss_pred             cCCCCCCeEEEEE----------EECCEEEEEEeecCCCcHHHHHh----hcCCCCHHHHHHHHHHHHHHHHHHHHCC--
Confidence            9999999999998          34677999999999999999886    4456999999999999999999999999  


Q ss_pred             eeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC---ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheec
Q 024842          182 YAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF---ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMREL  258 (262)
Q Consensus       182 ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~---~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l  258 (262)
                      |+||||||+|||++.++    .+||+|||+|.......   ..+++.|++||-+..-++     ....||||+|+++|+|
T Consensus       127 ivHrDiKp~Nill~~~~----~~kl~DFG~a~~~~~~~~~~~~Gt~~Y~APE~~~~~~~-----~~~~DiwSlGvilyel  197 (263)
T d2j4za1         127 VIHRDIKPENLLLGSAG----ELKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIEGRMH-----DEKVDLWSLGVLCYEF  197 (263)
T ss_dssp             CCCCCCCGGGEEECTTS----CEEECCCCSCSCCCCCCCEETTEEGGGCCHHHHTTCCC-----CTTHHHHHHHHHHHHH
T ss_pred             eeeeeeccccceecCCC----CEeecccceeeecCCCcccccCCCCcccCHHHHcCCCC-----CchhhhhhHhHHHHHH
Confidence            99999999999998776    69999999998765433   357888999887654322     1246889999999998


Q ss_pred             ccCC
Q 024842          259 MFGR  262 (262)
Q Consensus       259 ~~G~  262 (262)
                      ++|+
T Consensus       198 l~G~  201 (263)
T d2j4za1         198 LVGK  201 (263)
T ss_dssp             HHSS
T ss_pred             hcCC
Confidence            8885

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.1e-42  Score=275.06  Aligned_cols=194  Identities=22%  Similarity=0.224  Sum_probs=155.9

Q ss_pred             ceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc--chHHHHHHHHHHHHhhhCCC
Q 024842           27 RYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ--NNEQLEMVREEIRVSSLFSH  104 (262)
Q Consensus        27 ~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~--~~~~~~~~~~E~~~l~~l~h  104 (262)
                      -|++.++||+|+||.||+|++..+++                      .||+|++...  .....+.+.+|+++++.++|
T Consensus        10 y~~~~~~iG~G~fg~Vy~~~~~~~~~----------------------~va~K~i~~~~~~~~~~~~~~~E~~il~~l~H   67 (270)
T d1t4ha_          10 FLKFDIEIGRGSFKTVYKGLDTETTV----------------------EVAWCELQDRKLTKSERQRFKEEAEMLKGLQH   67 (270)
T ss_dssp             EEEEEEEEEECSSEEEEEEEETTTCC----------------------EEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCC
T ss_pred             EEEeeeEEecCcCcEEEEEEECCCCe----------------------EEEEEEEchhhCCHHHHHHHHHHHHHHHhCCC
Confidence            35888899999999999999987655                      5677765433  34456778999999999999


Q ss_pred             CCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeee
Q 024842          105 RNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAH  184 (262)
Q Consensus       105 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH  184 (262)
                      |||+++++++..      ........|++|||+.+++|.+++.    ....+++..++.++.|++.||+|||+++++|+|
T Consensus        68 pnIv~~~~~~~~------~~~~~~~~~ivmE~~~~g~L~~~l~----~~~~~~~~~~~~~~~qi~~gl~yLH~~~~~IiH  137 (270)
T d1t4ha_          68 PNIVRFYDSWES------TVKGKKCIVLVTELMTSGTLKTYLK----RFKVMKIKVLRSWCRQILKGLQFLHTRTPPIIH  137 (270)
T ss_dssp             TTBCCEEEEEEE------ESSSCEEEEEEEECCCSCBHHHHHH----HHSSCCHHHHHHHHHHHHHHHHHHHTSSSCCCC
T ss_pred             CCeeeEEEEEee------ccccCCEEEEEEeCCCCCcHHHHHh----ccccccHHHHHHHHHHHHHHHHHHHHCCCCEEe
Confidence            999999998731      1123456899999999999999886    345699999999999999999999998777999


Q ss_pred             cCCCCCcEEEec-CCCCCCceEEeeccceeeccccC---ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheeccc
Q 024842          185 NDVKPGNILITC-RKGQPPLAILMDFGSARPAQSKF---ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMF  260 (262)
Q Consensus       185 ~dikp~Nill~~-~~~~~~~~kl~Dfg~a~~~~~~~---~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~  260 (262)
                      |||||+|||++. ++    .+||+|||+|.......   ..|++.|++||-+.. .     .....||||+|+++|||++
T Consensus       138 rDiKp~NILl~~~~~----~~Kl~DFGla~~~~~~~~~~~~GT~~Y~aPE~~~~-~-----~~~~~DIwSlGvilyel~~  207 (270)
T d1t4ha_         138 RDLKCDNIFITGPTG----SVKIGDLGLATLKRASFAKAVIGTPEFMAPEMYEE-K-----YDESVDVYAFGMCMLEMAT  207 (270)
T ss_dssp             SCCCGGGEEESSTTS----CEEECCTTGGGGCCTTSBEESCSSCCCCCGGGGGT-C-----CCTHHHHHHHHHHHHHHHH
T ss_pred             CCcChhhceeeCCCC----CEEEeecCcceeccCCccCCcccCccccCHHHhCC-C-----CCCcCchhhHHHHHHHHHH
Confidence            999999999964 34    69999999998654332   468899999985432 1     2234689999999999888


Q ss_pred             CC
Q 024842          261 GR  262 (262)
Q Consensus       261 G~  262 (262)
                      |+
T Consensus       208 g~  209 (270)
T d1t4ha_         208 SE  209 (270)
T ss_dssp             SS
T ss_pred             CC
Confidence            85

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.6e-43  Score=288.52  Aligned_cols=193  Identities=19%  Similarity=0.233  Sum_probs=158.3

Q ss_pred             ecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc-chHHHHHHHHHHHHhhh
Q 024842           23 INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ-NNEQLEMVREEIRVSSL  101 (262)
Q Consensus        23 ~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~-~~~~~~~~~~E~~~l~~  101 (262)
                      +..++|++.+.||+|+||.||+|++..+++                      .||+|++... .....+.+.+|+.+++.
T Consensus         3 l~~d~y~~~~~iG~G~fg~V~~~~~~~~~~----------------------~vAiK~i~~~~~~~~~~~~~~Ei~il~~   60 (322)
T d1s9ja_           3 LKDDDFEKISELGAGNGGVVFKVSHKPSGL----------------------VMARKLIHLEIKPAIRNQIIRELQVLHE   60 (322)
T ss_dssp             CCGGGEEEEEEEECCSSCCEEEEEETTTTE----------------------EEEEEEEECCCCTTHHHHHHHHGGGGGG
T ss_pred             CCccCCEEEEEEecCCCeEEEEEEECCCCc----------------------EEEEEEEChhhCHHHHHHHHHHHHHHHh
Confidence            346899999999999999999999987765                      5777766543 33445678899999999


Q ss_pred             CCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHc-CCC
Q 024842          102 FSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHS-LEP  180 (262)
Q Consensus       102 l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~-~~~  180 (262)
                      ++||||++++++|          ......|++|||+.+++|.+++.    +...+++..++.++.|++.||.|||+ ++ 
T Consensus        61 l~HpnIv~l~~~~----------~~~~~~~iVmEy~~gg~L~~~l~----~~~~l~~~~~~~~~~qil~aL~yLH~~~~-  125 (322)
T d1s9ja_          61 CNSPYIVGFYGAF----------YSDGEISICMEHMDGGSLDQVLK----KAGRIPEQILGKVSIAVIKGLTYLREKHK-  125 (322)
T ss_dssp             CCCTTBCCEEEEE----------ECSSEEEEEEECCTTEEHHHHHH----HHSSCCHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             CCCCCCCcEEEEE----------EECCEEEEEEEcCCCCcHHHHHh----hcCCCCHHHHHHHHHHHHHHHHHHHHhCC-
Confidence            9999999999998          34677999999999999999886    34569999999999999999999997 48 


Q ss_pred             CeeecCCCCCcEEEecCCCCCCceEEeeccceeecccc---CccCcccCCcccchhhhhhhhhhhhhcCcccchheehee
Q 024842          181 PYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSK---FALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRE  257 (262)
Q Consensus       181 ~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~---~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~  257 (262)
                       |+||||||+|||++.++    .+||+|||+|....+.   ...|+..|.+||-+....+     ....||||+|+++||
T Consensus       126 -IiHRDiKP~NILl~~~~----~vkl~DFGla~~~~~~~~~~~~GT~~Y~APEvl~~~~y-----~~~~DiWSlGvil~e  195 (322)
T d1s9ja_         126 -IMHRDVKPSNILVNSRG----EIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHY-----SVQSDIWSMGLSLVE  195 (322)
T ss_dssp             -CCCSCCSGGGEEECTTC----CEEECCCCCCHHHHHHTC---CCSSCCCCHHHHHCSCC-----CTTHHHHHHHHHHHH
T ss_pred             -EEccccCHHHeeECCCC----CEEEeeCCCccccCCCccccccCCccccCchHHcCCCC-----CcHHHHHHHHHHHHH
Confidence             99999999999998777    6999999999876432   3468888999886654322     224578888888888


Q ss_pred             cccCC
Q 024842          258 LMFGR  262 (262)
Q Consensus       258 l~~G~  262 (262)
                      |++|+
T Consensus       196 ll~G~  200 (322)
T d1s9ja_         196 MAVGR  200 (322)
T ss_dssp             HHHSS
T ss_pred             HHHCC
Confidence            88774

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-42  Score=278.96  Aligned_cols=190  Identities=23%  Similarity=0.308  Sum_probs=157.7

Q ss_pred             CceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc---chHHHHHHHHHHHHhhhC
Q 024842           26 NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ---NNEQLEMVREEIRVSSLF  102 (262)
Q Consensus        26 ~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~---~~~~~~~~~~E~~~l~~l  102 (262)
                      ++|++.+.||+|+||.||+|++..+++                      .||+|++...   .....+.+.+|+.+++.+
T Consensus         8 ~dy~i~~~lG~G~fg~Vy~a~~~~~~~----------------------~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l   65 (288)
T d1uu3a_           8 EDFKFGKILGEGSFSTVVLARELATSR----------------------EYAIKILEKRHIIKENKVPYVTRERDVMSRL   65 (288)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCC----------------------EEEEEEEEHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred             CCCEEEEEEeeCCCeEEEEEEECCCCC----------------------EEEEEEEehHHccCHHHHHHHHHHHHHHHHc
Confidence            679999999999999999999987765                      5777766432   222346788999999999


Q ss_pred             CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCe
Q 024842          103 SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPY  182 (262)
Q Consensus       103 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~i  182 (262)
                      +||||+++++++          ......|++|||+.+|+|.+++.    ....+++..++.++.|++.||+|||+++  |
T Consensus        66 ~HpnIv~l~~~~----------~~~~~~~ivmEy~~gg~L~~~~~----~~~~l~e~~~~~~~~qi~~al~ylH~~~--i  129 (288)
T d1uu3a_          66 DHPFFVKLYFTF----------QDDEKLYFGLSYAKNGELLKYIR----KIGSFDETCTRFYTAEIVSALEYLHGKG--I  129 (288)
T ss_dssp             CSTTBCCEEEEE----------ECSSEEEEEECCCTTEEHHHHHH----HHSSCCHHHHHHHHHHHHHHHHHHHHTT--E
T ss_pred             CCCCeeEEEEEE----------EECCEEEEEEEccCCCCHHHhhh----ccCCCCHHHHHHHHHHHHHHHHhhcccc--E
Confidence            999999999988          34677999999999999999876    4456999999999999999999999999  9


Q ss_pred             eecCCCCCcEEEecCCCCCCceEEeeccceeecccc-------CccCcccCCcccchhhhhhhhhhhhhcCcccchheeh
Q 024842          183 AHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSK-------FALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILM  255 (262)
Q Consensus       183 vH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~-------~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~  255 (262)
                      +||||||+|||++.++    .+||+|||+|......       ...|++.|++||-+..-.+.     ...||||+|+++
T Consensus       130 iHrDiKp~NIll~~~~----~vkl~DFG~a~~~~~~~~~~~~~~~~GT~~Y~APE~~~~~~~~-----~~~DiwSlGvil  200 (288)
T d1uu3a_         130 IHRDLKPENILLNEDM----HIQITDFGTAKVLSPESKQARANSFVGTAQYVSPELLTEKSAC-----KSSDLWALGCII  200 (288)
T ss_dssp             ECSCCSGGGEEECTTS----CEEECCCTTCEECC----------CCCCGGGCCHHHHHTCCCC-----HHHHHHHHHHHH
T ss_pred             EcCcCCccccccCCCc----eEEecccccceecccCCcccccccccCCccccCceeeccCCCC-----cccceehhhHHH
Confidence            9999999999998777    6999999999876432       13588899999976543322     236899999999


Q ss_pred             eecccCC
Q 024842          256 RELMFGR  262 (262)
Q Consensus       256 ~~l~~G~  262 (262)
                      |+|++|+
T Consensus       201 yell~g~  207 (288)
T d1uu3a_         201 YQLVAGL  207 (288)
T ss_dssp             HHHHHSS
T ss_pred             HHHhhCC
Confidence            9998885

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=100.00  E-value=1.1e-41  Score=281.86  Aligned_cols=193  Identities=26%  Similarity=0.414  Sum_probs=161.5

Q ss_pred             CceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCCCC
Q 024842           26 NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSHR  105 (262)
Q Consensus        26 ~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~h~  105 (262)
                      ++|++.+.||+|+||.||+|++..+++                      .||+|++........+.+.+|+.+++.++||
T Consensus        26 ~~Y~i~~~lG~G~fg~Vy~~~~~~~g~----------------------~vAvK~i~~~~~~~~~~~~~E~~il~~l~Hp   83 (350)
T d1koaa2          26 DHYDIHEELGTGAFGVVHRVTERATGN----------------------NFAAKFVMTPHESDKETVRKEIQTMSVLRHP   83 (350)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTTE----------------------EEEEEEECCCSHHHHHHHHHHHHHHHHTCCT
T ss_pred             cCeEEEEEEecCcCeEEEEEEECCCCC----------------------EEEEEEEcccchhhHHHHHHHHHHHHhCCCC
Confidence            589999999999999999999987655                      6888887766666678899999999999999


Q ss_pred             CccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeeec
Q 024842          106 NLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHN  185 (262)
Q Consensus       106 ~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~  185 (262)
                      ||+++++++          ...+..|++|||+.+|+|.+++..   ....+++..++.++.||+.||.|||+++  |+||
T Consensus        84 nIv~~~~~~----------~~~~~~~ivmE~~~gg~L~~~l~~---~~~~l~e~~~~~i~~qi~~aL~ylH~~~--iiHr  148 (350)
T d1koaa2          84 TLVNLHDAF----------EDDNEMVMIYEFMSGGELFEKVAD---EHNKMSEDEAVEYMRQVCKGLCHMHENN--YVHL  148 (350)
T ss_dssp             TBCCEEEEE----------EETTEEEEEECCCCSCBHHHHHTC---TTSCBCHHHHHHHHHHHHHHHHHHHHTT--EECC
T ss_pred             CCCcEEEEE----------EECCEEEEEEEcCCCCCHHHHHHh---hcCCCCHHHHHHHHHHHHHHHHHHHhcC--Ceee
Confidence            999999988          346789999999999999988742   3456999999999999999999999999  9999


Q ss_pred             CCCCCcEEEecCCCCCCceEEeeccceeeccccC----ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecccC
Q 024842          186 DVKPGNILITCRKGQPPLAILMDFGSARPAQSKF----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMFG  261 (262)
Q Consensus       186 dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~G  261 (262)
                      ||||+|||++.+.+  ..+||+|||+|..+....    ..+++.|++||-+..-.+.     ...||||+|+++|+|++|
T Consensus       149 DiKp~NIll~~~~~--~~vkL~DFG~a~~~~~~~~~~~~~gT~~Y~aPEv~~~~~~~-----~~~DiwSlGvilyell~G  221 (350)
T d1koaa2         149 DLKPENIMFTTKRS--NELKLIDFGLTAHLDPKQSVKVTTGTAEFAAPEVAEGKPVG-----YYTDMWSVGVLSYILLSG  221 (350)
T ss_dssp             CCCGGGEEESSTTS--CCEEECCCTTCEECCTTSCEEEECSCTTTCCHHHHHTCCBC-----HHHHHHHHHHHHHHHHHS
T ss_pred             eechhHeeeccCCC--CeEEEeecchheecccccccceecCcccccCHHHHcCCCCC-----hhHhhhhhhHHHHHHHhC
Confidence            99999999975432  269999999999876543    3678899999866443221     236888899988888888


Q ss_pred             C
Q 024842          262 R  262 (262)
Q Consensus       262 ~  262 (262)
                      +
T Consensus       222 ~  222 (350)
T d1koaa2         222 L  222 (350)
T ss_dssp             S
T ss_pred             C
Confidence            5

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=100.00  E-value=1.6e-41  Score=281.17  Aligned_cols=193  Identities=25%  Similarity=0.334  Sum_probs=157.9

Q ss_pred             CceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCCCC
Q 024842           26 NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSHR  105 (262)
Q Consensus        26 ~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~h~  105 (262)
                      ++|++.+.||+|+||.||+|++..+++                      .||+|++........+.+.+|+.+++.++||
T Consensus        29 d~Y~i~~~lG~G~fg~V~~a~~~~~~~----------------------~vAiK~i~~~~~~~~~~~~~Ei~il~~l~Hp   86 (352)
T d1koba_          29 DYYDILEELGSGAFGVVHRCVEKATGR----------------------VFVAKFINTPYPLDKYTVKNEISIMNQLHHP   86 (352)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTCC----------------------EEEEEEEECCSHHHHHHHHHHHHHHTTCCST
T ss_pred             cceEEEEEEecCCCeEEEEEEECCCCC----------------------EEEEEEECCcchhHHHHHHHHHHHHHhCCCC
Confidence            579999999999999999999987655                      6788877666555667788999999999999


Q ss_pred             CccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeeec
Q 024842          106 NLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHN  185 (262)
Q Consensus       106 ~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~  185 (262)
                      ||++++++|          ......|++|||+.+++|.+.+.   ....++++..++.++.||+.||.|||++|  |+||
T Consensus        87 nIv~~~~~~----------~~~~~~~ivmE~~~gg~L~~~~~---~~~~~l~e~~~~~i~~qi~~aL~ylH~~~--iiHR  151 (352)
T d1koba_          87 KLINLHDAF----------EDKYEMVLILEFLSGGELFDRIA---AEDYKMSEAEVINYMRQACEGLKHMHEHS--IVHL  151 (352)
T ss_dssp             TBCCEEEEE----------ECSSEEEEEEECCCCCBHHHHTT---CTTCCBCHHHHHHHHHHHHHHHHHHHHTT--EECC
T ss_pred             CCCcEEEEE----------EECCEEEEEEEcCCCChHHHHHH---hcCCCCCHHHHHHHHHHHHHHHHHHHHCC--eeec
Confidence            999999998          44678999999999999988654   23446999999999999999999999999  9999


Q ss_pred             CCCCCcEEEecCCCCCCceEEeeccceeeccccC----ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecccC
Q 024842          186 DVKPGNILITCRKGQPPLAILMDFGSARPAQSKF----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMFG  261 (262)
Q Consensus       186 dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~G  261 (262)
                      ||||+|||++...+  ..+||+|||+|....+..    ..+++.|.+||-+..-.+     ....||||+|+++|+|++|
T Consensus       152 DiKp~NILl~~~~~--~~vkL~DFGla~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-----~~~~DiwSlGvilyelltG  224 (352)
T d1koba_         152 DIKPENIMCETKKA--SSVKIIDFGLATKLNPDEIVKVTTATAEFAAPEIVDREPV-----GFYTDMWAIGVLGYVLLSG  224 (352)
T ss_dssp             CCCGGGEEESSTTC--CCEEECCCTTCEECCTTSCEEEECSSGGGCCHHHHTTCCB-----CHHHHHHHHHHHHHHHHHS
T ss_pred             ccccccccccccCC--CeEEEeecccceecCCCCceeeccCcccccCHHHHcCCCC-----CCccchHHHHHHHHHHHhC
Confidence            99999999974322  269999999999876543    357777888875543322     1235788888888888887


Q ss_pred             C
Q 024842          262 R  262 (262)
Q Consensus       262 ~  262 (262)
                      +
T Consensus       225 ~  225 (352)
T d1koba_         225 L  225 (352)
T ss_dssp             C
T ss_pred             C
Confidence            5

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-41  Score=280.05  Aligned_cols=191  Identities=23%  Similarity=0.258  Sum_probs=159.5

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc---chHHHHHHHHHHHHhhh
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ---NNEQLEMVREEIRVSSL  101 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~---~~~~~~~~~~E~~~l~~  101 (262)
                      -++|++++.||+|+||.||+|++..+++                      .||+|++...   .....+.+.+|+.+++.
T Consensus         4 l~dy~~~~~lG~G~fg~V~~~~~~~~~~----------------------~~AiK~i~k~~~~~~~~~~~~~~E~~il~~   61 (337)
T d1o6la_           4 MNDFDYLKLLGKGTFGKVILVREKATGR----------------------YYAMKILRKEVIIAKDEVAHTVTESRVLQN   61 (337)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCC----------------------EEEEEEEEHHHHHHTTCHHHHHHHHHHHHS
T ss_pred             hHhcEEEEEEecCcCeEEEEEEECCCCC----------------------EEEEEEEchhhccCHHHHHHHHHHHHHHHh
Confidence            4689999999999999999999987765                      6777766432   22235678899999999


Q ss_pred             CCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCC
Q 024842          102 FSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPP  181 (262)
Q Consensus       102 l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~  181 (262)
                      ++||||+++++++          ......|++|||+.+|+|.+++.    ....+++..++.++.|++.||+|||+++  
T Consensus        62 l~hp~Iv~l~~~~----------~~~~~~~iv~ey~~gg~L~~~~~----~~~~~~e~~~~~~~~qil~al~ylH~~~--  125 (337)
T d1o6la_          62 TRHPFLTALKYAF----------QTHDRLCFVMEYANGGELFFHLS----RERVFTEERARFYGAEIVSALEYLHSRD--  125 (337)
T ss_dssp             CCCTTBCCEEEEE----------ECSSEEEEEEECCTTCBHHHHHH----HHSCCCHHHHHHHHHHHHHHHHHHHHTT--
T ss_pred             CCCCCEEEEEeee----------ccccccccceeccCCCchhhhhh----cccCCcHHHHHHHHHHHhhhhhhhhhcC--
Confidence            9999999999998          44678999999999999999886    4556999999999999999999999999  


Q ss_pred             eeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-----ccCcccCCcccchhhhhhhhhhhhhcCcccchheehe
Q 024842          182 YAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMR  256 (262)
Q Consensus       182 ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~  256 (262)
                      |+||||||+|||++.++    .+||+|||+|+......     ..|++.|.+||-+..-++.     ...|+||+|+++|
T Consensus       126 iiHRDlKP~NILl~~~g----~vkl~DFG~a~~~~~~~~~~~~~~GT~~Y~aPE~~~~~~y~-----~~~DiwSlGvily  196 (337)
T d1o6la_         126 VVYRDIKLENLMLDKDG----HIKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLEDNDYG-----RAVDWWGLGVVMY  196 (337)
T ss_dssp             CBCCCCCGGGEEECTTS----CEEECCCTTCBCSCCTTCCBCCCEECGGGCCGGGGSSSCBC-----TTHHHHHHHHHHH
T ss_pred             ccccccCHHHeEecCCC----CEEEeecccccccccCCcccccceeCHHHhhhhhccCCCCC-----hhhcccchhhHHH
Confidence            99999999999998877    69999999998754322     3578889999876554432     2468888888888


Q ss_pred             ecccCC
Q 024842          257 ELMFGR  262 (262)
Q Consensus       257 ~l~~G~  262 (262)
                      ||++|+
T Consensus       197 eml~G~  202 (337)
T d1o6la_         197 EMMCGR  202 (337)
T ss_dssp             HHHHSS
T ss_pred             HHHHCC
Confidence            888885

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-41  Score=273.79  Aligned_cols=195  Identities=25%  Similarity=0.321  Sum_probs=158.0

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc------chHHHHHHHHHHHH
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ------NNEQLEMVREEIRV   98 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~------~~~~~~~~~~E~~~   98 (262)
                      .++|++.+.||+|+||.||+|++..+++                      .||+|++...      .....+.+.+|+.+
T Consensus         9 ~d~Y~~~~~lG~G~fg~Vy~~~~~~~~~----------------------~~AvK~i~~~~~~~~~~~~~~~~~~~E~~i   66 (293)
T d1jksa_           9 DDYYDTGEELGSGQFAVVKKCREKSTGL----------------------QYAAKFIKKRRTKSSRRGVSREDIEREVSI   66 (293)
T ss_dssp             GGTEEEEEEEEECSSEEEEEEEETTTCC----------------------EEEEEEEEBCSSTTCSSSBCHHHHHHHHHH
T ss_pred             ccCEEEeEEEecCCCeEEEEEEECCCCC----------------------EEEEEEEEhhhcchhhhhHHHHHHHHHHHH
Confidence            4679999999999999999999987766                      5666655322      11235678899999


Q ss_pred             hhhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcC
Q 024842           99 SSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSL  178 (262)
Q Consensus        99 l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~  178 (262)
                      ++.++||||+++++++          ......|++|||+.+|+|.+++.    ....+++..++.++.|++.||+|||++
T Consensus        67 l~~l~HpnIv~~~~~~----------~~~~~~~iv~E~~~gg~L~~~i~----~~~~l~~~~~~~~~~qi~~al~yLH~~  132 (293)
T d1jksa_          67 LKEIQHPNVITLHEVY----------ENKTDVILILELVAGGELFDFLA----EKESLTEEEATEFLKQILNGVYYLHSL  132 (293)
T ss_dssp             HHHCCCTTBCCEEEEE----------ECSSEEEEEEECCCSCBHHHHHH----HHSSCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHhCCCCCCCcEEEEE----------EECCEEEEEEEcCCCccccchhc----cccccchhHHHHHHHHHHHHHHhhhhc
Confidence            9999999999999998          44678999999999999999886    345699999999999999999999999


Q ss_pred             CCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC----ccCcccCCcccchhhhhhhhhhhhhcCcccchhee
Q 024842          179 EPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQIL  254 (262)
Q Consensus       179 ~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~  254 (262)
                      +  |+||||||+|||++.++.....+||+|||+|.......    ..+++.|.+||-+..-.     .....||||+|++
T Consensus       133 ~--ivHrDiKp~Nill~~~~~~~~~vkl~DfG~a~~~~~~~~~~~~~~t~~y~APE~~~~~~-----~~~~~DiwSlGvi  205 (293)
T d1jksa_         133 Q--IAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNYEP-----LGLEADMWSIGVI  205 (293)
T ss_dssp             T--EECCCCSGGGEEESCSSSSSCCEEECCCTTCEECTTSCBCSCCCCCGGGCCHHHHTTCC-----BCTHHHHHHHHHH
T ss_pred             c--eeecccccceEEEecCCCcccceEecchhhhhhcCCCccccccCCCCcccCHHHHcCCC-----CCCcccchhhhHH
Confidence            9  99999999999998877555679999999998765432    35677788887553221     1123578888888


Q ss_pred             heecccCC
Q 024842          255 MRELMFGR  262 (262)
Q Consensus       255 ~~~l~~G~  262 (262)
                      +|+|++|+
T Consensus       206 lyell~g~  213 (293)
T d1jksa_         206 TYILLSGA  213 (293)
T ss_dssp             HHHHHHSS
T ss_pred             HHHHHcCC
Confidence            88888774

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.2e-41  Score=276.71  Aligned_cols=190  Identities=22%  Similarity=0.313  Sum_probs=159.5

Q ss_pred             CceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc---chHHHHHHHHHHHHhhhC
Q 024842           26 NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ---NNEQLEMVREEIRVSSLF  102 (262)
Q Consensus        26 ~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~---~~~~~~~~~~E~~~l~~l  102 (262)
                      ++|++.+.||+|+||.||+|++..+++                      .||+|++...   .....+.+.+|+.+++.+
T Consensus         4 ~dy~i~~~lG~G~fg~Vy~a~~~~~g~----------------------~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l   61 (316)
T d1fota_           4 QDFQILRTLGTGSFGRVHLIRSRHNGR----------------------YYAMKVLKKEIVVRLKQVEHTNDERLMLSIV   61 (316)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCC----------------------EEEEEEEEHHHHHHTTCHHHHHHHHHHHHSC
T ss_pred             hHeEEEEEEecCcCcEEEEEEECCCCC----------------------EEEEEEEchHHccCHHHHHHHHHHHHHHHhc
Confidence            579999999999999999999987765                      5777766432   223356788999999999


Q ss_pred             CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCe
Q 024842          103 SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPY  182 (262)
Q Consensus       103 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~i  182 (262)
                      +||||+++++++          ......|++|||+.+++|..++.    ....+++..++.++.||+.||+|||+++  |
T Consensus        62 ~HpnIv~~~~~~----------~~~~~~~ivmE~~~gg~l~~~~~----~~~~~~~~~~~~~~~qi~~al~~lH~~~--i  125 (316)
T d1fota_          62 THPFIIRMWGTF----------QDAQQIFMIMDYIEGGELFSLLR----KSQRFPNPVAKFYAAEVCLALEYLHSKD--I  125 (316)
T ss_dssp             CBTTBCCEEEEE----------ECSSEEEEEECCCCSCBHHHHHH----HTSSCCHHHHHHHHHHHHHHHHHHHTTT--E
T ss_pred             cCcChhheeeeE----------eeCCeeeeEeeecCCcccccccc----ccccccccHHHHHHHHHHHhhhhhccCc--E
Confidence            999999999998          44678999999999999998876    5566899999999999999999999999  9


Q ss_pred             eecCCCCCcEEEecCCCCCCceEEeeccceeeccccC--ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheeccc
Q 024842          183 AHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF--ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMF  260 (262)
Q Consensus       183 vH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~--~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~  260 (262)
                      +||||||+|||++.++    .+||+|||+|.......  ..|++.|++||.+..-++.     ...||||+|+++|+|++
T Consensus       126 iHrDiKp~NILl~~~g----~vkL~DFG~a~~~~~~~~~~~Gt~~Y~APE~l~~~~y~-----~~~DiwSlGvilyemlt  196 (316)
T d1fota_         126 IYRDLKPENILLDKNG----HIKITDFGFAKYVPDVTYTLCGTPDYIAPEVVSTKPYN-----KSIDWWSFGILIYEMLA  196 (316)
T ss_dssp             ECCCCCGGGEEECTTS----CEEECCCSSCEECSSCBCCCCSCTTTCCHHHHTTCCBC-----TTHHHHHHHHHHHHHHH
T ss_pred             EccccCchheeEcCCC----CEEEecCccceEeccccccccCcccccCHHHHcCCCCC-----chhhccccchhHHHHHh
Confidence            9999999999998776    69999999999875433  4688899999866433222     24689999999999998


Q ss_pred             CC
Q 024842          261 GR  262 (262)
Q Consensus       261 G~  262 (262)
                      |+
T Consensus       197 G~  198 (316)
T d1fota_         197 GY  198 (316)
T ss_dssp             SS
T ss_pred             CC
Confidence            85

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.5e-41  Score=276.65  Aligned_cols=193  Identities=24%  Similarity=0.307  Sum_probs=157.6

Q ss_pred             CceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc---chHHHHHHHHHHHHhhhC
Q 024842           26 NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ---NNEQLEMVREEIRVSSLF  102 (262)
Q Consensus        26 ~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~---~~~~~~~~~~E~~~l~~l  102 (262)
                      +.|+..+.||+|+||.||+|++..+++                      .||+|++...   .....+.+.+|+.+++.+
T Consensus        15 ~~y~~l~~lG~G~fg~Vy~a~~~~~~~----------------------~vAvK~i~~~~~~~~~~~~~~~~Ei~il~~l   72 (309)
T d1u5ra_          15 KLFSDLREIGHGSFGAVYFARDVRNSE----------------------VVAIKKMSYSGKQSNEKWQDIIKEVRFLQKL   72 (309)
T ss_dssp             HHEEEEEEEEECSSSEEEEEEETTTTE----------------------EEEEEEEECCSSCHHHHHHHHHHHHHHHTTC
T ss_pred             HhcEeeEEEecCCCeEEEEEEECCCCc----------------------EEEEEEEchhhccCHHHHHHHHHHHHHHHHC
Confidence            369999999999999999999987655                      6778776543   234456788999999999


Q ss_pred             CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCe
Q 024842          103 SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPY  182 (262)
Q Consensus       103 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~i  182 (262)
                      +||||+++++++.          .....|++|||+.++++..+..    ...++++..++.++.|++.||.|||+++  |
T Consensus        73 ~HpnIv~~~~~~~----------~~~~~~iv~E~~~~g~l~~~~~----~~~~l~e~~~~~i~~qi~~aL~yLH~~~--i  136 (309)
T d1u5ra_          73 RHPNTIQYRGCYL----------REHTAWLVMEYCLGSASDLLEV----HKKPLQEVEIAAVTHGALQGLAYLHSHN--M  136 (309)
T ss_dssp             CCTTBCCEEEEEE----------ETTEEEEEEECCSEEHHHHHHH----HTSCCCHHHHHHHHHHHHHHHHHHHHTT--C
T ss_pred             CCCCEeeEEEEEE----------ECCEEEEEEEecCCCchHHHHH----hCCCCCHHHHHHHHHHHHHHHHHHHhCC--E
Confidence            9999999999883          3677999999999998876554    4566999999999999999999999999  9


Q ss_pred             eecCCCCCcEEEecCCCCCCceEEeeccceeeccc-cCccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecccC
Q 024842          183 AHNDVKPGNILITCRKGQPPLAILMDFGSARPAQS-KFALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMFG  261 (262)
Q Consensus       183 vH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~-~~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~G  261 (262)
                      +||||||+|||++.++    .+||+|||+|..... ....|++.|++||-+......  .+....||||+|+++|||++|
T Consensus       137 iHrDiKp~NILl~~~~----~~Kl~DFG~a~~~~~~~~~~GT~~Y~APE~~~~~~~~--~y~~~~DiwSlGvilyel~~g  210 (309)
T d1u5ra_         137 IHRDVKAGNILLSEPG----LVKLGDFGSASIMAPANSFVGTPYWMAPEVILAMDEG--QYDGKVDVWSLGITCIELAER  210 (309)
T ss_dssp             BCCCCSGGGEEEETTT----EEEECCCTTCBSSSSBCCCCSCGGGCCHHHHTTTTSC--CBCTHHHHHHHHHHHHHHHHS
T ss_pred             eccCCCcceEEECCCC----CEEEeecccccccCCCCccccCccccCHHHHhccCCC--CcCchhhhhhHHHHHHHHHHC
Confidence            9999999999998777    799999999987653 334688889888876432211  112236899999999998888


Q ss_pred             C
Q 024842          262 R  262 (262)
Q Consensus       262 ~  262 (262)
                      +
T Consensus       211 ~  211 (309)
T d1u5ra_         211 K  211 (309)
T ss_dssp             S
T ss_pred             C
Confidence            5

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.4e-41  Score=274.51  Aligned_cols=195  Identities=19%  Similarity=0.205  Sum_probs=153.1

Q ss_pred             eeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhh
Q 024842           21 VWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSS  100 (262)
Q Consensus        21 ~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~  100 (262)
                      ..++.++|++.+.||+|+||.||+|++..+++                      .||+|++..... ..+++.+|+.+++
T Consensus        12 wei~~~~~~~~~~iG~G~fg~Vy~a~~~~~~~----------------------~vAvK~i~~~~~-~~~~~~~E~~il~   68 (287)
T d1opja_          12 WEMERTDITMKHKLGGGQYGEVYEGVWKKYSL----------------------TVAVKTLKEDTM-EVEEFLKEAAVMK   68 (287)
T ss_dssp             TBCCGGGEEEEEETTTTTTSSEEEEEEGGGTE----------------------EEEEEECCTTCS-CHHHHHHHHHHHH
T ss_pred             cEecHHHeEEeeEEeeCCCeEEEEEEECCCCe----------------------EEEEEEECCccc-hHHHHHHHHHHHH
Confidence            34677899999999999999999999987655                      577777654433 2467899999999


Q ss_pred             hCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCC
Q 024842          101 LFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEP  180 (262)
Q Consensus       101 ~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~  180 (262)
                      .++||||+++++++          ...+..+++|||+.+|+|.+++...  ....+++..++.++.|++.||+|||+++ 
T Consensus        69 ~l~HpnIv~~~~~~----------~~~~~~~iv~E~~~~g~l~~~l~~~--~~~~~~~~~~~~i~~qi~~gL~yLH~~~-  135 (287)
T d1opja_          69 EIKHPNLVQLLGVC----------TREPPFYIITEFMTYGNLLDYLREC--NRQEVSAVVLLYMATQISSAMEYLEKKN-  135 (287)
T ss_dssp             HCCCTTBCCEEEEE----------CSSSSCEEEEECCTTCBHHHHHHHS--CTTTSCHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred             hCCCCCEecCCccE----------eeCCeeEEEeecccCcchHHHhhhc--cccchHHHHHHHHHHHHHHHHHHHHHCC-
Confidence            99999999999988          3467789999999999999987532  3356899999999999999999999998 


Q ss_pred             CeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccCc------cCcccCCcccchhhhhhhhhhhhhcCcccchhee
Q 024842          181 PYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKFA------LGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQIL  254 (262)
Q Consensus       181 ~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~~------~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~  254 (262)
                       |+||||||+|||++.++    .+||+|||+|+.......      .++..|++||.+..-.+     ....||||+|++
T Consensus       136 -iiHrDlKp~NILl~~~~----~~Kl~DFG~a~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~-----~~k~DiwS~Gv~  205 (287)
T d1opja_         136 -FIHRDLAARNCLVGENH----LVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKF-----SIKSDVWAFGVL  205 (287)
T ss_dssp             -CCCSCCSGGGEEECGGG----CEEECCCCCTTTCCSSSSEEETTEEECGGGCCHHHHHHCCC-----SHHHHHHHHHHH
T ss_pred             -cccCccccCeEEECCCC----cEEEccccceeecCCCCceeeccccccccccChHHHcCCCC-----CchhhhhhHHHH
Confidence             99999999999998877    699999999987654321      24555666664432211     123466666666


Q ss_pred             heecccC
Q 024842          255 MRELMFG  261 (262)
Q Consensus       255 ~~~l~~G  261 (262)
                      +|||++|
T Consensus       206 l~ell~~  212 (287)
T d1opja_         206 LWEIATY  212 (287)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHhC
Confidence            6666654

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.5e-41  Score=276.58  Aligned_cols=194  Identities=23%  Similarity=0.338  Sum_probs=145.1

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc-hHHHHHHHHHHHHhhhCC
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN-NEQLEMVREEIRVSSLFS  103 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~-~~~~~~~~~E~~~l~~l~  103 (262)
                      .+.|++.+.||+|+||.||+|++..+++                      .||+|.+.... ......+.+|+.+++.++
T Consensus         8 ~d~Y~~~~~lG~G~fg~Vy~~~~~~~~~----------------------~vAvK~i~~~~~~~~~~~~~~Ei~il~~l~   65 (307)
T d1a06a_           8 RDIYDFRDVLGTGAFSEVILAEDKRTQK----------------------LVAIKCIAKKALEGKEGSMENEIAVLHKIK   65 (307)
T ss_dssp             GGTEEEEEESBSGGGGGEEEEEETTTCC----------------------EEEEEEEEC----------CHHHHHHHTCC
T ss_pred             ccceEEEEEEeeccCeEEEEEEECCCCC----------------------EEEEEEEchHHhhhHHHHHHHHHHHHHhCC
Confidence            3569999999999999999999987655                      57777765432 222356788999999999


Q ss_pred             CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCee
Q 024842          104 HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYA  183 (262)
Q Consensus       104 h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~iv  183 (262)
                      ||||+++++++          ...+..|++|||+.+++|.+++.    ....+++..++.++.||+.||.|||+++  |+
T Consensus        66 HpnIv~l~~~~----------~~~~~~~lvmE~~~gg~L~~~l~----~~~~l~e~~~~~~~~qi~~al~ylH~~~--ii  129 (307)
T d1a06a_          66 HPNIVALDDIY----------ESGGHLYLIMQLVSGGELFDRIV----EKGFYTERDASRLIFQVLDAVKYLHDLG--IV  129 (307)
T ss_dssp             CTTBCCEEEEE----------ECSSEEEEEECCCCSCBHHHHHH----TCSCCCHHHHHHHHHHHHHHHHHHHHTT--CC
T ss_pred             CCCCCcEEEEE----------EECCEEEEEEeccCCCcHHHhhh----cccCCCHHHHHHHHHHHHHHHHhhhhce--ee
Confidence            99999999988          44678999999999999999886    5567999999999999999999999999  99


Q ss_pred             ecCCCCCcEEEecCCCCCCceEEeeccceeeccccC----ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecc
Q 024842          184 HNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELM  259 (262)
Q Consensus       184 H~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~  259 (262)
                      ||||||+|||+..... ...+||+|||+|.......    ..|++.|++||.+..-.+     ....||||+|+++|+|+
T Consensus       130 HrDiKp~Nil~~~~~~-~~~vkl~DFG~a~~~~~~~~~~~~~GT~~y~APE~~~~~~~-----~~~~DiwSlGvilyell  203 (307)
T d1a06a_         130 HRDLKPENLLYYSLDE-DSKIMISDFGLSKMEDPGSVLSTACGTPGYVAPEVLAQKPY-----SKAVDCWSIGVIAYILL  203 (307)
T ss_dssp             CSCCCGGGEEESSSST-TCCEEECCC------------------CTTSCHHHHTTCCC-----CTHHHHHHHHHHHHHHH
T ss_pred             eEEecccceeecccCC-CceEEEeccceeEEccCCCeeeeeeeCccccCcHHHcCCCC-----CcHHHhhhhhHHHHHHH
Confidence            9999999999964321 1269999999998765433    358889999987644322     23468899999999888


Q ss_pred             cCC
Q 024842          260 FGR  262 (262)
Q Consensus       260 ~G~  262 (262)
                      +|+
T Consensus       204 ~g~  206 (307)
T d1a06a_         204 CGY  206 (307)
T ss_dssp             HSS
T ss_pred             hCC
Confidence            885

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=100.00  E-value=1e-40  Score=267.89  Aligned_cols=196  Identities=22%  Similarity=0.243  Sum_probs=156.7

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc---------hHHHHHHHHH
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN---------NEQLEMVREE   95 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~---------~~~~~~~~~E   95 (262)
                      .++|++.+.||+|+||.||+|++..+++                      .||+|++....         ....+.+.+|
T Consensus         2 ~~~y~~~~~iG~G~~g~V~~~~~~~~~~----------------------~~AvK~i~~~~~~~~~~~~~~~~~~~~~~E   59 (277)
T d1phka_           2 YENYEPKEILGRGVSSVVRRCIHKPTCK----------------------EYAVKIIDVTGGGSFSAEEVQELREATLKE   59 (277)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTE----------------------EEEEEEEETTCSTTCCHHHHHHHHHHHHHH
T ss_pred             cccCEEceEEecCcCeEEEEEEECCCCC----------------------EEEEEEEecccccchhHHHHHHHHHHHHHH
Confidence            5789999999999999999999987665                      56666654321         2234568899


Q ss_pred             HHHhhhCC-CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHH
Q 024842           96 IRVSSLFS-HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKH  174 (262)
Q Consensus        96 ~~~l~~l~-h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~  174 (262)
                      +.+++.++ ||||+++++++          .+.+..|++|||+.+++|.+++.    ...++++..++.++.||+.||+|
T Consensus        60 ~~~l~~l~~hpnIv~~~~~~----------~~~~~~~ivmE~~~~g~L~~~l~----~~~~l~e~~~~~~~~qi~~al~~  125 (277)
T d1phka_          60 VDILRKVSGHPNIIQLKDTY----------ETNTFFFLVFDLMKKGELFDYLT----EKVTLSEKETRKIMRALLEVICA  125 (277)
T ss_dssp             HHHHHHHTTCTTBCCEEEEE----------ECSSEEEEEEECCTTCBHHHHHH----HHSSCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCCeEEEEeec----------ccCcceEEEEEcCCCchHHHHHH----hcCCCCHHHHHHHHHHHHHHHHH
Confidence            99999997 99999999998          44778999999999999999986    44569999999999999999999


Q ss_pred             HHcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC----ccCcccCCcccchhhhhhh-hhhhhhcCccc
Q 024842          175 MHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF----ALGQRRYSCRNGLLSIVLH-LSELLSCGTVR  249 (262)
Q Consensus       175 lH~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~~~~~~~~d~~s~g~~-~~e~~~~~~v~  249 (262)
                      ||+++  |+||||||+|||++.++    .+||+|||++....+..    ..+++.|.+||-+.+.... ........|+|
T Consensus       126 lH~~~--ivHrDlkp~Nill~~~~----~~kl~DFG~a~~~~~~~~~~~~~gt~~y~~PE~~~~~~~~~~~~~~~~~Diw  199 (277)
T d1phka_         126 LHKLN--IVHRDLKPENILLDDDM----NIKLTDFGFSCQLDPGEKLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMW  199 (277)
T ss_dssp             HHHTT--EECSCCSGGGEEECTTC----CEEECCCTTCEECCTTCCBCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHH
T ss_pred             HHHcC--CcccccccceEEEcCCC----CeEEccchheeEccCCCceeeeeccCCCCCHHHhhccccccCCCCCchheEc
Confidence            99999  99999999999998776    69999999998876432    3467777777766433221 11112236888


Q ss_pred             chheeheecccCC
Q 024842          250 VIQILMRELMFGR  262 (262)
Q Consensus       250 ~~g~~~~~l~~G~  262 (262)
                      |+|+++|+|++|+
T Consensus       200 slGvilyeml~g~  212 (277)
T d1phka_         200 STGVIMYTLLAGS  212 (277)
T ss_dssp             HHHHHHHHHHHSS
T ss_pred             ccchhhhhhccCC
Confidence            8888888888875

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-41  Score=271.96  Aligned_cols=194  Identities=20%  Similarity=0.232  Sum_probs=152.6

Q ss_pred             eecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc--chHHHHHHHHHHHHh
Q 024842           22 WINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ--NNEQLEMVREEIRVS   99 (262)
Q Consensus        22 ~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~--~~~~~~~~~~E~~~l   99 (262)
                      .++.++|++.+.||+|+||.||+|+...                         .||+|++...  .....+.+.+|+.++
T Consensus         4 ei~~~~~~~~~~lG~G~fg~Vy~~~~~~-------------------------~vAvK~~~~~~~~~~~~~~~~~E~~~l   58 (276)
T d1uwha_           4 EIPDGQITVGQRIGSGSFGTVYKGKWHG-------------------------DVAVKMLNVTAPTPQQLQAFKNEVGVL   58 (276)
T ss_dssp             BCCTTCCCCCSEEEECSSCEEEEEESSS-------------------------EEEEEECCCSSCCTTHHHHHHHHHHHH
T ss_pred             ccccccEEEEEEEeeCCCcEEEEEEECC-------------------------EEEEEEEEcccCCHHHHHHHHHHHHHH
Confidence            3778899999999999999999997532                         4677766433  344567899999999


Q ss_pred             hhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCC
Q 024842          100 SLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLE  179 (262)
Q Consensus       100 ~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~  179 (262)
                      +.++||||+++++++.           .+..+++|||+.+|+|.+++..   .+..+++..+..++.|++.||+|||+++
T Consensus        59 ~~l~HpnIv~~~~~~~-----------~~~~~lv~Ey~~~g~L~~~l~~---~~~~~~~~~~~~i~~qi~~gl~yLH~~~  124 (276)
T d1uwha_          59 RKTRHVNILLFMGYST-----------APQLAIVTQWCEGSSLYHHLHI---IETKFEMIKLIDIARQTAQGMDYLHAKS  124 (276)
T ss_dssp             TTCCCTTBCCEEEEEC-----------SSSCEEEEECCCEEEHHHHHHT---SCCCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HhCCCCCEeeeeEEEe-----------ccEEEEEEecCCCCCHHHHHhh---ccCCCCHHHHHHHHHHHHHHHHHHhcCC
Confidence            9999999999998752           3468999999999999998852   3456999999999999999999999998


Q ss_pred             CCeeecCCCCCcEEEecCCCCCCceEEeeccceeecccc-------CccCcccCCcccchhhhhhhhhhhhhcCcccchh
Q 024842          180 PPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSK-------FALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQ  252 (262)
Q Consensus       180 ~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~-------~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g  252 (262)
                        |+||||||+|||++.++    .+||+|||+|......       ...+++.|++||-+.......  +....||||+|
T Consensus       125 --ivHrDlKp~NiLl~~~~----~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~--~~~~sDiwS~G  196 (276)
T d1uwha_         125 --IIHRDLKSNNIFLHEDL----TVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNP--YSFQSDVYAFG  196 (276)
T ss_dssp             --CCCSCCCGGGEEEETTS----SEEECCCCCSCC------------CCCCGGGCCHHHHTTCSSCC--CCHHHHHHHHH
T ss_pred             --EeccccCHHHEEEcCCC----CEEEccccceeeccccCCcccccccccCcccCCHHHHhcccCCC--CCchhhhhhhH
Confidence              99999999999998776    6999999999765432       135677788887653211110  11235888888


Q ss_pred             eeheecccCC
Q 024842          253 ILMRELMFGR  262 (262)
Q Consensus       253 ~~~~~l~~G~  262 (262)
                      +++|||+||+
T Consensus       197 v~l~el~tg~  206 (276)
T d1uwha_         197 IVLYELMTGQ  206 (276)
T ss_dssp             HHHHHHHHSS
T ss_pred             HHHHHHHHCC
Confidence            8888888885

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.3e-41  Score=266.94  Aligned_cols=190  Identities=20%  Similarity=0.244  Sum_probs=143.3

Q ss_pred             ecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhC
Q 024842           23 INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLF  102 (262)
Q Consensus        23 ~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l  102 (262)
                      |+.++|++.+.||+|+||.||+|++..+                       +.||+|++...... .+++.+|+.+++.+
T Consensus         2 idp~~~~~~~~iG~G~fg~Vy~~~~~~~-----------------------~~vAvK~i~~~~~~-~~~~~~E~~~l~~l   57 (263)
T d1sm2a_           2 IDPSELTFVQEIGSGQFGLVHLGYWLNK-----------------------DKVAIKTIREGAMS-EEDFIEEAEVMMKL   57 (263)
T ss_dssp             BCCSCEEEEEEEECCSSCCEEEEEETTT-----------------------EEEEEEECCSSSSC-HHHHHHHHHHHHHC
T ss_pred             CChHHcEEEEEEeeCCCeEEEEEEECCC-----------------------CEEEEEEECCCcCc-HHHHHHHHHHHHhc
Confidence            5678999999999999999999997632                       35788877654333 36789999999999


Q ss_pred             CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCe
Q 024842          103 SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPY  182 (262)
Q Consensus       103 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~i  182 (262)
                      +||||+++++++          ...+..+++|||+.+|+|.+++..   ....+++..++.++.|++.||.|||+++  |
T Consensus        58 ~HpnIv~~~g~~----------~~~~~~~lv~E~~~~g~L~~~l~~---~~~~~~~~~~~~i~~qia~gl~~lH~~~--i  122 (263)
T d1sm2a_          58 SHPKLVQLYGVC----------LEQAPICLVFEFMEHGCLSDYLRT---QRGLFAAETLLGMCLDVCEGMAYLEEAC--V  122 (263)
T ss_dssp             CCTTBCCEEEEE----------CSSSSCEEEEECCTTCBHHHHHHT---TTTCCCHHHHHHHHHHHHHHHHHHHHTT--C
T ss_pred             CCCCccccccee----------ccCCceEEEEEecCCCcHHHHhhc---cccCCCHHHHHHHHHHHHHHHHhhhccc--e
Confidence            999999999988          335679999999999999998752   3456899999999999999999999998  9


Q ss_pred             eecCCCCCcEEEecCCCCCCceEEeeccceeeccccC------ccCcccCCcccchhhhhhhhhhhhhcCcccchheehe
Q 024842          183 AHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF------ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMR  256 (262)
Q Consensus       183 vH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~------~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~  256 (262)
                      +||||||+|||++.++    .+||+|||+++...+..      ..++..|++||-+..-.+     ....||||+|+++|
T Consensus       123 iHrDlKp~Nill~~~~----~~Kl~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~-----~~k~DVwS~Gvil~  193 (263)
T d1sm2a_         123 IHRDLAARNCLVGENQ----VIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSRY-----SSKSDVWSFGVLMW  193 (263)
T ss_dssp             CCTTCSGGGEEECGGG----CEEECSCC------------------CTTSCCHHHHTTCCC-----CHHHHHHHHHHHHH
T ss_pred             eecccchhheeecCCC----CeEecccchheeccCCCceeecceecCcccCChHHhcCCCC-----CchhhhcchHHHHH
Confidence            9999999999999877    69999999998664332      245667777764422211     12246666666666


Q ss_pred             eccc
Q 024842          257 ELMF  260 (262)
Q Consensus       257 ~l~~  260 (262)
                      ||+|
T Consensus       194 el~t  197 (263)
T d1sm2a_         194 EVFS  197 (263)
T ss_dssp             HHHT
T ss_pred             HHHH
Confidence            6665

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=7.2e-41  Score=277.17  Aligned_cols=191  Identities=24%  Similarity=0.299  Sum_probs=158.6

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc---chHHHHHHHHHHHHhhh
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ---NNEQLEMVREEIRVSSL  101 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~---~~~~~~~~~~E~~~l~~  101 (262)
                      -++|++++.||+|+||.||+|++..+++                      .||+|++...   .....+.+.+|+.+++.
T Consensus        40 ld~y~i~~~lG~G~fg~Vy~a~~~~~g~----------------------~~AvK~i~~~~~~~~~~~~~~~~E~~il~~   97 (350)
T d1rdqe_          40 LDQFDRIKTLGTGSFGRVMLVKHKESGN----------------------HYAMKILDKQKVVKLKQIEHTLNEKRILQA   97 (350)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTTCC----------------------EEEEEEEEHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             ccCeEEEEEeecCcCcEEEEEEECCCCC----------------------EEEEEEEchHHccCHHHHHHHHHHHHHHHH
Confidence            3689999999999999999999987765                      5777765432   22234678899999999


Q ss_pred             CCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCC
Q 024842          102 FSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPP  181 (262)
Q Consensus       102 l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~  181 (262)
                      ++||||+++++++          ......+++|+++.+++|.+++.    ....+++..++.++.||+.||.|||+++  
T Consensus        98 l~hpnIv~~~~~~----------~~~~~~~~v~e~~~~g~l~~~l~----~~~~l~e~~~~~i~~qi~~aL~yLH~~~--  161 (350)
T d1rdqe_          98 VNFPFLVKLEFSF----------KDNSNLYMVMEYVAGGEMFSHLR----RIGRFSEPHARFYAAQIVLTFEYLHSLD--  161 (350)
T ss_dssp             CCCTTBCCEEEEE----------ECSSEEEEEEECCTTCBHHHHHH----HHCCCCHHHHHHHHHHHHHHHHHHHHTT--
T ss_pred             cCCCcEeeccccc----------ccccccccccccccccchhhhHh----hcCCCCHHHHHHHHHHHHHHHHHHHhCC--
Confidence            9999999999988          44677899999999999999886    4456999999999999999999999999  


Q ss_pred             eeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC--ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecc
Q 024842          182 YAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF--ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELM  259 (262)
Q Consensus       182 ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~--~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~  259 (262)
                      |+||||||+|||++.++    .+||+|||+|+......  ..+++.|++||-+..-++.     ...|+||+|+++|+|+
T Consensus       162 iiHRDIKP~NILl~~~g----~ikL~DFG~a~~~~~~~~~~~Gt~~Y~APE~~~~~~~~-----~~~DiwSlGvilyeml  232 (350)
T d1rdqe_         162 LIYRDLKPENLLIDQQG----YIQVTDFGFAKRVKGRTWTLCGTPEALAPEIILSKGYN-----KAVDWWALGVLIYEMA  232 (350)
T ss_dssp             EECCCCSGGGEEECTTS----CEEECCCTTCEECSSCBCCCEECGGGCCHHHHTTCCBC-----THHHHHHHHHHHHHHH
T ss_pred             EecCcCCHHHcccCCCC----CEEeeeceeeeecccccccccCccccCCHHHHcCCCCC-----ccccccchhHHHHHHH
Confidence            99999999999998776    69999999999876443  4578889888876543322     2358888888888888


Q ss_pred             cCC
Q 024842          260 FGR  262 (262)
Q Consensus       260 ~G~  262 (262)
                      +|+
T Consensus       233 tG~  235 (350)
T d1rdqe_         233 AGY  235 (350)
T ss_dssp             HSS
T ss_pred             hCC
Confidence            885

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-40  Score=267.59  Aligned_cols=192  Identities=19%  Similarity=0.264  Sum_probs=152.4

Q ss_pred             eecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhh
Q 024842           22 WINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSL  101 (262)
Q Consensus        22 ~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~  101 (262)
                      .++.++|++.+.||+|+||.||+|++..                       +..||+|++...... .+.+.+|+.+++.
T Consensus         9 ei~~~~~~~~~~iG~G~fg~Vy~~~~~~-----------------------~~~vAvK~~~~~~~~-~~~~~~E~~~l~~   64 (272)
T d1qpca_           9 EVPRETLKLVERLGAGQFGEVWMGYYNG-----------------------HTKVAVKSLKQGSMS-PDAFLAEANLMKQ   64 (272)
T ss_dssp             BCCGGGEEEEEEEEEETTEEEEEEEETT-----------------------TEEEEEEEECTTSSC-HHHHHHHHHHHHH
T ss_pred             ecCHHHeEEeEEEecCCCcEEEEEEECC-----------------------CCEEEEEEEccCcCC-HHHHHHHHHHHHh
Confidence            3677899999999999999999999752                       235788877654332 3678999999999


Q ss_pred             CCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCC
Q 024842          102 FSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPP  181 (262)
Q Consensus       102 l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~  181 (262)
                      ++||||+++++++.           .+..+++|||+.+|+|.+++....  ...+++..++.++.|++.||.|||+++  
T Consensus        65 l~HpnIv~~~g~~~-----------~~~~~iv~Ey~~~g~L~~~~~~~~--~~~l~~~~~~~i~~qi~~gl~~lH~~~--  129 (272)
T d1qpca_          65 LQHQRLVRLYAVVT-----------QEPIYIITEYMENGSLVDFLKTPS--GIKLTINKLLDMAAQIAEGMAFIEERN--  129 (272)
T ss_dssp             CCCTTBCCEEEEEC-----------SSSCEEEEECCTTCBHHHHTTSHH--HHTCCHHHHHHHHHHHHHHHHHHHHTT--
T ss_pred             CCCCCEeEEEeeec-----------cCCeEEEEEeCCCCcHHHHHhhcC--CCCCCHHHHHHHHHHHHHHHHHHHhCC--
Confidence            99999999999762           345799999999999998765322  234899999999999999999999998  


Q ss_pred             eeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC------ccCcccCCcccchhhhhhhhhhhhhcCcccchheeh
Q 024842          182 YAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF------ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILM  255 (262)
Q Consensus       182 ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~------~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~  255 (262)
                      |+||||||+|||++.++    .+||+|||+|+...+..      ..++..|++||.+..-.     .....||||+|+++
T Consensus       130 ivHrDiKp~NIll~~~~----~~Kl~DFGla~~~~~~~~~~~~~~~gt~~y~APE~~~~~~-----~~~~sDvwS~Gvvl  200 (272)
T d1qpca_         130 YIHRDLRAANILVSDTL----SCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGT-----FTIKSDVWSFGILL  200 (272)
T ss_dssp             EECSCCSGGGEEECTTS----CEEECCCTTCEECSSSCEECCTTCCCCTTTSCHHHHHHCE-----ECHHHHHHHHHHHH
T ss_pred             cccCccchhheeeeccc----ceeeccccceEEccCCccccccccCCcccccChHHHhCCC-----CCchhhhhhhHHHH
Confidence            99999999999998776    69999999998765432      24666788887553221     11235777777777


Q ss_pred             eecccC
Q 024842          256 RELMFG  261 (262)
Q Consensus       256 ~~l~~G  261 (262)
                      |||+||
T Consensus       201 ~ellt~  206 (272)
T d1qpca_         201 TEIVTH  206 (272)
T ss_dssp             HHHHTT
T ss_pred             HHHHhC
Confidence            777774

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-40  Score=267.07  Aligned_cols=195  Identities=17%  Similarity=0.220  Sum_probs=149.5

Q ss_pred             eeecCCceEEEEE-eecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc-chHHHHHHHHHHHH
Q 024842           21 VWINENRYRILRQ-LGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ-NNEQLEMVREEIRV   98 (262)
Q Consensus        21 ~~~~~~~y~~~~~-ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~-~~~~~~~~~~E~~~   98 (262)
                      ..+..++|.+.+. ||+|+||.||+|.+..++.                    +..||+|++... .....+.+.+|+.+
T Consensus         3 l~l~~~~~~~~~~~iG~G~fg~Vy~~~~~~~~~--------------------~~~vAvK~l~~~~~~~~~~~~~~E~~i   62 (285)
T d1u59a_           3 LFLKRDNLLIADIELGCGNFGSVRQGVYRMRKK--------------------QIDVAIKVLKQGTEKADTEEMMREAQI   62 (285)
T ss_dssp             CBCCGGGEEEEEEEEECCTTEEEEEEEEC---C--------------------CEEEEEEEECSSCCHHHHHHHHHHHHH
T ss_pred             eeecccCeEECCcEEecccCeEEEEEEEecCCC--------------------cEEEEEEEEChhcCHHHHHHHHHHHHH
Confidence            4567788999985 9999999999998765432                    235788877644 34556789999999


Q ss_pred             hhhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcC
Q 024842           99 SSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSL  178 (262)
Q Consensus        99 l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~  178 (262)
                      ++.++||||+++++++.           .+..|++|||+.+|+|.+++.   ..+..+++..+..++.|++.||.|||++
T Consensus        63 l~~l~HpnIv~l~g~~~-----------~~~~~lvmE~~~~g~L~~~l~---~~~~~l~~~~~~~i~~qi~~gL~ylH~~  128 (285)
T d1u59a_          63 MHQLDNPYIVRLIGVCQ-----------AEALMLVMEMAGGGPLHKFLV---GKREEIPVSNVAELLHQVSMGMKYLEEK  128 (285)
T ss_dssp             HHHCCCTTBCCEEEEEE-----------SSSEEEEEECCTTEEHHHHHT---TCTTTSCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHhCCCCCEeeEeeeec-----------cCeEEEEEEeCCCCcHHHHhh---ccccCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            99999999999999762           245899999999999998764   2345699999999999999999999999


Q ss_pred             CCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC--------ccCcccCCcccchhhhhhhhhhhhhcCcccc
Q 024842          179 EPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF--------ALGQRRYSCRNGLLSIVLHLSELLSCGTVRV  250 (262)
Q Consensus       179 ~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~--------~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~  250 (262)
                      +  |+||||||+|||++.++    .+||+|||+|+......        ..+++.|++||.+..-.     .....||||
T Consensus       129 ~--iiHrDlKp~Nill~~~~----~~Kl~DFGla~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-----~~~ksDVwS  197 (285)
T d1u59a_         129 N--FVHRDLAARNVLLVNRH----YAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRK-----FSSRSDVWS  197 (285)
T ss_dssp             T--EECCCCSGGGEEEEETT----EEEECCCTTCEECTTCSCEECCCCSSCCCGGGCCHHHHHHCE-----ECHHHHHHH
T ss_pred             C--eecCcCchhheeeccCC----ceeeccchhhhcccccccccccccccccCccccChHHHhCCC-----CCccchhhc
Confidence            8  99999999999998877    79999999998765432        23556777777432111     111245666


Q ss_pred             hheeheeccc
Q 024842          251 IQILMRELMF  260 (262)
Q Consensus       251 ~g~~~~~l~~  260 (262)
                      +|+++|||+|
T Consensus       198 ~Gv~l~E~lt  207 (285)
T d1u59a_         198 YGVTMWEALS  207 (285)
T ss_dssp             HHHHHHHHHT
T ss_pred             chHHHHHHHh
Confidence            6666666554

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.1e-40  Score=270.50  Aligned_cols=192  Identities=23%  Similarity=0.364  Sum_probs=152.5

Q ss_pred             CceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCCCC
Q 024842           26 NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSHR  105 (262)
Q Consensus        26 ~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~h~  105 (262)
                      ++|++.+.||+|+||.||+|.+..+++                      .||+|.+...... ...+.+|+.+++.++||
T Consensus         5 ~rY~i~~~lG~G~fg~Vy~~~~~~~~~----------------------~~AiK~i~~~~~~-~~~~~~Ei~il~~l~Hp   61 (321)
T d1tkia_           5 EKYMIAEDLGRGEFGIVHRCVETSSKK----------------------TYMAKFVKVKGTD-QVLVKKEISILNIARHR   61 (321)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTE----------------------EEEEEEECCCTHH-HHHHHHHHHHHHHSCCT
T ss_pred             cceEEEEEEecCCCeEEEEEEECCCCc----------------------EEEEEEEcCCccc-HHHHHHHHHHHHhCCCC
Confidence            679999999999999999999987765                      6788877654433 35678999999999999


Q ss_pred             CccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeeec
Q 024842          106 NLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHN  185 (262)
Q Consensus       106 ~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~  185 (262)
                      ||+++++++          ......|++|||+.+++|.+++.   ..+..+++.+++.++.||+.||+|||+.+  |+||
T Consensus        62 nIv~~~~~~----------~~~~~~~lvmE~~~gg~L~~~i~---~~~~~l~e~~~~~i~~qi~~al~yLH~~~--iiHr  126 (321)
T d1tkia_          62 NILHLHESF----------ESMEELVMIFEFISGLDIFERIN---TSAFELNEREIVSYVHQVCEALQFLHSHN--IGHF  126 (321)
T ss_dssp             TBCCEEEEE----------EETTEEEEEECCCCCCBHHHHHT---SSSCCCCHHHHHHHHHHHHHHHHHHHHTT--EECC
T ss_pred             CCCeEEEEE----------EECCEEEEEEecCCCCcHHHHHH---hcCCCCCHHHHHHHHHHHHHHHHHHHHcC--CCcc
Confidence            999999988          44678999999999999999885   23346999999999999999999999999  9999


Q ss_pred             CCCCCcEEEecCCCCCCceEEeeccceeeccccC----ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecccC
Q 024842          186 DVKPGNILITCRKGQPPLAILMDFGSARPAQSKF----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMFG  261 (262)
Q Consensus       186 dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~G  261 (262)
                      ||||+|||++.++.  ..+||+|||++.......    ..+++.|.+|+......+     ....||||+|+++|+|++|
T Consensus       127 DlKp~NIll~~~~~--~~ikl~DFG~~~~~~~~~~~~~~~~t~~y~ape~~~~~~~-----~~~~DiWSlGvily~ll~G  199 (321)
T d1tkia_         127 DIRPENIIYQTRRS--STIKIIEFGQARQLKPGDNFRLLFTAPEYYAPEVHQHDVV-----STATDMWSLGTLVYVLLSG  199 (321)
T ss_dssp             CCCGGGEEESSSSC--CCEEECCCTTCEECCTTCEEEEEESCGGGSCHHHHTTCEE-----CHHHHHHHHHHHHHHHHHS
T ss_pred             cccccceeecCCCc--eEEEEcccchhhccccCCcccccccccccccchhccCCCC-----CchhhcccHHHHHHHHHhC
Confidence            99999999975432  269999999998765433    245666666664432221     1234777777777777776


Q ss_pred             C
Q 024842          262 R  262 (262)
Q Consensus       262 ~  262 (262)
                      +
T Consensus       200 ~  200 (321)
T d1tkia_         200 I  200 (321)
T ss_dssp             S
T ss_pred             C
Confidence            4

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.4e-40  Score=266.66  Aligned_cols=195  Identities=19%  Similarity=0.263  Sum_probs=141.0

Q ss_pred             ecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc-chHHHHHHHHHHHHhhh
Q 024842           23 INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ-NNEQLEMVREEIRVSSL  101 (262)
Q Consensus        23 ~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~-~~~~~~~~~~E~~~l~~  101 (262)
                      ++.++|++.+.||+|+||.||+|++..+++.                   ...+|+|++... .....+.+.+|+.+++.
T Consensus        23 i~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~-------------------~~~vavK~~~~~~~~~~~~~~~~E~~~l~~   83 (299)
T d1jpaa_          23 IDISCVKIEQVIGAGEFGEVCSGHLKLPGKR-------------------EIFVAIKTLKSGYTEKQRRDFLSEASIMGQ   83 (299)
T ss_dssp             CCGGGEEEEEEEEECSSSEEEEEEECC---C-------------------CEEEEEEECCSSCCHHHHHHHHHHHHHHTT
T ss_pred             hChhhcEEeeEEeeCCCeEEEEEEEeCCCCE-------------------EEEEEEEEECcccCHHHHHHHHHHHHHHHh
Confidence            4567899999999999999999998776542                   124677776544 44456789999999999


Q ss_pred             CCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCC
Q 024842          102 FSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPP  181 (262)
Q Consensus       102 l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~  181 (262)
                      ++||||+++++++          ...+..+++|||+.+|+|.+++..   ....+++.++..++.|++.||.|||+++  
T Consensus        84 l~HpnIv~l~g~~----------~~~~~~~iv~Ey~~~g~L~~~~~~---~~~~l~~~~~~~i~~qia~gl~yLH~~~--  148 (299)
T d1jpaa_          84 FDHPNVIHLEGVV----------TKSTPVMIITEFMENGSLDSFLRQ---NDGQFTVIQLVGMLRGIAAGMKYLADMN--  148 (299)
T ss_dssp             CCCTTBCCEEEEE----------CSSSSCEEEEECCTTEEHHHHHHT---TTTCSCHHHHHHHHHHHHHHHHHHHHTT--
T ss_pred             CCCCCCccEEEEE----------eeCCEEEEEEEecCCCcceeeecc---ccCCCCHHHHHHHHHHHHHHHHHHhhCC--
Confidence            9999999999988          346779999999999999987752   3446999999999999999999999998  


Q ss_pred             eeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC----------ccCcccCCcccchhhhhhhhhhhhhcCcccch
Q 024842          182 YAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF----------ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVI  251 (262)
Q Consensus       182 ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~----------~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~  251 (262)
                      |+||||||+|||++.++    .+||+|||+|+...+..          ..+++.|++||.+..-     ......||||+
T Consensus       149 iiHrDlKp~NILl~~~~----~~Kl~DFGla~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~-----~~~~~sDvwS~  219 (299)
T d1jpaa_         149 YVHRDLAARNILVNSNL----VCKVSDFGLSRFLEDDTSDPTYTSALGGKIPIRWTAPEAIQYR-----KFTSASDVWSY  219 (299)
T ss_dssp             CCCSCCCGGGEEECTTC----CEEECCC-----------------------CGGGSCHHHHHSC-----CCCHHHHHHHH
T ss_pred             CccCccccceEEECCCC----cEEECCcccceEccCCCCcceeeecccccCCccccCHHHHhcC-----CCCcccccccc
Confidence            99999999999998776    69999999998664322          1245566666533211     11112455555


Q ss_pred             heeheeccc
Q 024842          252 QILMRELMF  260 (262)
Q Consensus       252 g~~~~~l~~  260 (262)
                      |+++|||+|
T Consensus       220 Gvvl~el~t  228 (299)
T d1jpaa_         220 GIVMWEVMS  228 (299)
T ss_dssp             HHHHHHHHT
T ss_pred             hHHHHHHHh
Confidence            555555554

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-40  Score=271.85  Aligned_cols=200  Identities=22%  Similarity=0.307  Sum_probs=150.0

Q ss_pred             ecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc-chHHHHHHHHHHHHhhh
Q 024842           23 INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ-NNEQLEMVREEIRVSSL  101 (262)
Q Consensus        23 ~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~-~~~~~~~~~~E~~~l~~  101 (262)
                      ++.++|++.+.||+|+||.||+|++..+++...                 ...||+|++... .......+.+|+.+++.
T Consensus        34 i~~~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~-----------------~~~vavK~~~~~~~~~~~~~~~~E~~~l~~   96 (325)
T d1rjba_          34 FPRENLEFGKVLGSGAFGKVMNATAYGISKTGV-----------------SIQVAVKMLKEKADSSEREALMSELKMMTQ   96 (325)
T ss_dssp             CCGGGEEEEEEEEECSSEEEEEEEEESCSSSSC-----------------EEEEEEEEECC------CHHHHHHHHHHHH
T ss_pred             CCHHHeEEeeEEeeCCCeEEEEEEEcCCCcccc-----------------eeEEEEEEeccccCHHHHHHHHHHHHHHHH
Confidence            566899999999999999999999887654322                 125778876543 33344678899999988


Q ss_pred             C-CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhh-------------------cCCCCCHHHH
Q 024842          102 F-SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQT-------------------KKEFFSTSDV  161 (262)
Q Consensus       102 l-~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~-------------------~~~~~~~~~~  161 (262)
                      + +||||+++++++          ...+..|++|||+.+|+|.+++.....                   ....+++..+
T Consensus        97 l~~HpnIv~l~~~~----------~~~~~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  166 (325)
T d1rjba_          97 LGSHENIVNLLGAC----------TLSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDL  166 (325)
T ss_dssp             HCCCTTBCCEEEEE----------CSSSSCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHH
T ss_pred             hcCCCcEeEEEEEE----------eeCCeEEEEEEcCCCCcHHHHHHhccCCCcchhhhhccccccccccccCCCCHHHH
Confidence            7 899999999998          446779999999999999999864321                   1235899999


Q ss_pred             HHHHHHHHHHHHHHHcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-------ccCcccCCcccchhh
Q 024842          162 LQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-------ALGQRRYSCRNGLLS  234 (262)
Q Consensus       162 ~~i~~ql~~~l~~lH~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-------~~~~~~~~~~~d~~s  234 (262)
                      +.++.|++.||+|||+++  |+||||||+|||++.++    .+||+|||+|+......       ..+++.|++||.+..
T Consensus       167 ~~i~~qi~~gl~yLH~~~--IiHRDlKp~Nill~~~~----~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~l~~  240 (325)
T d1rjba_         167 LCFAYQVAKGMEFLEFKS--CVHRDLAARNVLVTHGK----VVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFE  240 (325)
T ss_dssp             HHHHHHHHHHHHHHHHTT--EEETTCSGGGEEEETTT----EEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCC--eeeccCchhccccccCC----eEEEeeccccccccCCCceeeeccccCCCccCChHHHcC
Confidence            999999999999999998  99999999999998777    79999999998765432       235667888874432


Q ss_pred             hhhhhhhhhhcCcccchheeheeccc
Q 024842          235 IVLHLSELLSCGTVRVIQILMRELMF  260 (262)
Q Consensus       235 ~g~~~~e~~~~~~v~~~g~~~~~l~~  260 (262)
                      -.+     ....||||+|+++|||++
T Consensus       241 ~~~-----~~~~DiwS~Gvil~emlt  261 (325)
T d1rjba_         241 GIY-----TIKSDVWSYGILLWEIFS  261 (325)
T ss_dssp             CCC-----CHHHHHHHHHHHHHHHTT
T ss_pred             CCC-----CcceeccchhHHHHHHHh
Confidence            211     112456666666666654

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4e-40  Score=264.58  Aligned_cols=192  Identities=15%  Similarity=0.211  Sum_probs=146.9

Q ss_pred             ecCCceEEE-EEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc--chHHHHHHHHHHHHh
Q 024842           23 INENRYRIL-RQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ--NNEQLEMVREEIRVS   99 (262)
Q Consensus        23 ~~~~~y~~~-~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~--~~~~~~~~~~E~~~l   99 (262)
                      ++.+.+.+. ++||+|+||.||+|.+...+.                    ++.||+|++...  .....+.+.+|+.++
T Consensus         3 ld~~~~~le~k~iG~G~fG~Vy~~~~~~~~~--------------------~~~vAvK~~~~~~~~~~~~~~~~~E~~il   62 (277)
T d1xbba_           3 LDRKLLTLEDKELGSGNFGTVKKGYYQMKKV--------------------VKTVAVKILKNEANDPALKDELLAEANVM   62 (277)
T ss_dssp             CCGGGEEEEEEEEEECSSEEEEEEEEECSSS--------------------EEEEEEEEEC-----CHHHHHHHHHHHHH
T ss_pred             echhhCeecCCCcccCCCeEEEEEEEccCCc--------------------CeEEEEEEEChhhCCHHHHHHHHHHHHHH
Confidence            344455554 469999999999998754321                    236888877543  334457799999999


Q ss_pred             hhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCC
Q 024842          100 SLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLE  179 (262)
Q Consensus       100 ~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~  179 (262)
                      +.++||||+++++++.           .+..+++|||+.+|+|.+++.    ....+++..++.++.|++.||+|||+++
T Consensus        63 ~~l~HpnIv~~~g~~~-----------~~~~~lvmE~~~~g~L~~~l~----~~~~l~~~~~~~i~~qi~~gl~ylH~~~  127 (277)
T d1xbba_          63 QQLDNPYIVRMIGICE-----------AESWMLVMEMAELGPLNKYLQ----QNRHVKDKNIIELVHQVSMGMKYLEESN  127 (277)
T ss_dssp             HTCCCTTBCCEEEEEE-----------SSSEEEEEECCTTEEHHHHHH----HCTTCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HhCCCCCCceEEEEec-----------cCCEEEEEEcCCCCcHHHHHh----hccCCCHHHHHHHHHHHHHHHhhHHhCC
Confidence            9999999999999862           235789999999999999886    4556999999999999999999999998


Q ss_pred             CCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC--------ccCcccCCcccchhhhhhhhhhhhhcCcccch
Q 024842          180 PPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF--------ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVI  251 (262)
Q Consensus       180 ~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~--------~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~  251 (262)
                        |+||||||+|||++.++    .+||+|||+|+...+..        ..+++.|++||.+....+     ....||||+
T Consensus       128 --iiHrDlKp~Nill~~~~----~~kl~DFGla~~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~-----~~~sDiwS~  196 (277)
T d1xbba_         128 --FVHRDLAARNVLLVTQH----YAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYKF-----SSKSDVWSF  196 (277)
T ss_dssp             --EECSCCSGGGEEEEETT----EEEECCCTTCEECCTTCSEEEC----CCCGGGCCHHHHHHCEE-----EHHHHHHHH
T ss_pred             --cccCCCcchhhcccccC----cccccchhhhhhccccccccccccccCCCceecCchhhcCCCC-----Cchhhhccc
Confidence              99999999999999887    79999999998764332        246677888875533221     123566666


Q ss_pred             heeheeccc
Q 024842          252 QILMRELMF  260 (262)
Q Consensus       252 g~~~~~l~~  260 (262)
                      |+++|||++
T Consensus       197 Gv~l~ellt  205 (277)
T d1xbba_         197 GVLMWEAFS  205 (277)
T ss_dssp             HHHHHHHHT
T ss_pred             hhhhhHHhh
Confidence            666666665

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.1e-40  Score=274.73  Aligned_cols=191  Identities=23%  Similarity=0.250  Sum_probs=153.6

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc------chHHHHHHHHHHHH
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ------NNEQLEMVREEIRV   98 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~------~~~~~~~~~~E~~~   98 (262)
                      -++|++.+.||+|+||.||+|++..+++                      .||+|++...      ..........|+.+
T Consensus         3 lddy~i~~~lG~G~fg~Vy~~~~~~t~~----------------------~vAiK~i~~~~~~~~~~~~~~~~e~~~~~~   60 (364)
T d1omwa3           3 MNDFSVHRIIGRGGFGEVYGCRKADTGK----------------------MYAMKCLDKKRIKMKQGETLALNERIMLSL   60 (364)
T ss_dssp             STTEEEEEEEEECSSCEEEEEEETTTCC----------------------EEEEEEEEHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHhCeeeeEEecCCCeEEEEEEECCCCC----------------------EEEEEEEchHHcchhhHHHHHHHHHHHHHH
Confidence            4689999999999999999999987766                      5677765322      11222333445777


Q ss_pred             hhhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcC
Q 024842           99 SSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSL  178 (262)
Q Consensus        99 l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~  178 (262)
                      ++.++||||+++++++          ...+..|++|||+.+++|.+++.    ....+++..++.++.||+.||.|||++
T Consensus        61 l~~~~hpnIv~l~~~~----------~~~~~~~ivmE~~~gg~L~~~l~----~~~~~~e~~~~~~~~qi~~aL~ylH~~  126 (364)
T d1omwa3          61 VSTGDCPFIVCMSYAF----------HTPDKLSFILDLMNGGDLHYHLS----QHGVFSEADMRFYAAEIILGLEHMHNR  126 (364)
T ss_dssp             HSSSCCTTBCCEEEEE----------ECSSEEEEEECCCCSCBHHHHHH----HHCSCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HhcCCCCcEEEEEEEE----------EECCEEEEEEEecCCCcHHHHHH----hcccccHHHHHHHHHHHHHHHHHHHHC
Confidence            8888999999999988          34677999999999999999886    445689999999999999999999999


Q ss_pred             CCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC---ccCcccCCcccchhh-hhhhhhhhhhcCcccchhee
Q 024842          179 EPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF---ALGQRRYSCRNGLLS-IVLHLSELLSCGTVRVIQIL  254 (262)
Q Consensus       179 ~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~---~~~~~~~~~~~d~~s-~g~~~~e~~~~~~v~~~g~~  254 (262)
                      +  |+||||||+|||++.++    .+||+|||+|.......   ..|++.|.+||-+.. .++     -...|+||+|++
T Consensus       127 ~--iiHrDlKP~NILl~~~g----~iKl~DFGla~~~~~~~~~~~~GT~~y~APE~~~~~~~~-----~~~~DiwSlGvi  195 (364)
T d1omwa3         127 F--VVYRDLKPANILLDEHG----HVRISDLGLACDFSKKKPHASVGTHGYMAPEVLQKGVAY-----DSSADWFSLGCM  195 (364)
T ss_dssp             T--EECCCCSGGGEEECSSS----CEEECCCTTCEECSSSCCCSCCSCGGGCCHHHHSTTCCC-----CTHHHHHHHHHH
T ss_pred             C--ccceeeccceeEEcCCC----cEEEeeeceeeecCCCcccccccccccchhHHhhcCCCC-----CcccchhHHHHH
Confidence            9  99999999999998777    69999999998765432   468888888887642 211     123588899999


Q ss_pred             heecccCC
Q 024842          255 MRELMFGR  262 (262)
Q Consensus       255 ~~~l~~G~  262 (262)
                      +|+|++|+
T Consensus       196 lyemltG~  203 (364)
T d1omwa3         196 LFKLLRGH  203 (364)
T ss_dssp             HHHHHHSS
T ss_pred             HHHHHhCC
Confidence            99988885

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=2.1e-39  Score=260.88  Aligned_cols=195  Identities=21%  Similarity=0.303  Sum_probs=154.4

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc---chHHHHHHHHHHHHhhh
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ---NNEQLEMVREEIRVSSL  101 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~---~~~~~~~~~~E~~~l~~  101 (262)
                      .++|++.+.||+|+||.||+|++..+++                      .||+|.+...   .....+.+.+|+.+++.
T Consensus         6 ~drY~i~~~lG~G~fg~Vy~a~~~~~~~----------------------~vAiK~i~~~~~~~~~~~~~~~~E~~~l~~   63 (277)
T d1o6ya_           6 SDRYELGEILGFGGMSEVHLARDLRLHR----------------------DVAVKVLRADLARDPSFYLRFRREAQNAAA   63 (277)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTE----------------------EEEEEEECSTTTTCHHHHHHHHHHHHHHHT
T ss_pred             cceeEEeEEEeeCCCeEEEEEEECCCCC----------------------EEEEEEEchhhccCHHHHHHHHHHHHHHHh
Confidence            5789999999999999999999987765                      5777766433   34455678999999999


Q ss_pred             CCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCC
Q 024842          102 FSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPP  181 (262)
Q Consensus       102 l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~  181 (262)
                      ++||||+++++++..      .+......|++|||+.+++|.+++.    ...++++.+++.++.|++.||+|||+++  
T Consensus        64 ~~hpniv~~~~~~~~------~~~~~~~~~lvmE~~~g~~L~~~~~----~~~~l~~~~~~~i~~qi~~al~~lH~~~--  131 (277)
T d1o6ya_          64 LNHPAIVAVYDTGEA------ETPAGPLPYIVMEYVDGVTLRDIVH----TEGPMTPKRAIEVIADACQALNFSHQNG--  131 (277)
T ss_dssp             CCCTTBCCEEEEEEE------ECSSSEEEEEEEECCCEEEHHHHHH----HHCSCCHHHHHHHHHHHHHHHHHHHHTT--
T ss_pred             cCCCCCCcccceeee------ccCCCceEEEEEECCCCCEehhhhc----ccCCCCHHHHHHHHHHHHHHHHHHHhCC--
Confidence            999999999998742      1222345899999999999998876    4456999999999999999999999999  


Q ss_pred             eeecCCCCCcEEEecCCCCCCceEEeeccceeecccc--------CccCcccCCcccchhhhhhhhhhhhhcCcccchhe
Q 024842          182 YAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSK--------FALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQI  253 (262)
Q Consensus       182 ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~--------~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~  253 (262)
                      |+||||||+|||++.++    ..+|+|||.+......        ...+++.|++||.+..-.+     ....||||+|+
T Consensus       132 iiHrDiKP~NIll~~~~----~~~l~d~~~~~~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~-----~~~~DiwSlGv  202 (277)
T d1o6ya_         132 IIHRDVKPANIMISATN----AVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSV-----DARSDVYSLGC  202 (277)
T ss_dssp             EECCCCSGGGEEEETTS----CEEECCCTTCEECC----------------TTCCHHHHTTCCC-----CHHHHHHHHHH
T ss_pred             ccCccccCcccccCccc----cceeehhhhhhhhccccccccccccccCcccccCHHHHcCCCC-----CcceecccchH
Confidence            99999999999998777    6999999998755322        2357889999987643222     22468999999


Q ss_pred             eheecccCC
Q 024842          254 LMRELMFGR  262 (262)
Q Consensus       254 ~~~~l~~G~  262 (262)
                      ++|+|+||+
T Consensus       203 ilyelltG~  211 (277)
T d1o6ya_         203 VLYEVLTGE  211 (277)
T ss_dssp             HHHHHHHSS
T ss_pred             HHHHHHhCC
Confidence            999999885

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-39  Score=258.37  Aligned_cols=190  Identities=21%  Similarity=0.286  Sum_probs=148.3

Q ss_pred             ecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhC
Q 024842           23 INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLF  102 (262)
Q Consensus        23 ~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l  102 (262)
                      ++.++|++.++||+|+||+||+|+++ +                      +..||+|++...... .+.+.+|+.+++.+
T Consensus         1 ~~~~~~~~~~~iG~G~fg~Vy~~~~~-~----------------------~~~vAvK~l~~~~~~-~~~~~~Ev~~~~~l   56 (258)
T d1k2pa_           1 IDPKDLTFLKELGTGQFGVVKYGKWR-G----------------------QYDVAIKMIKEGSMS-EDEFIEEAKVMMNL   56 (258)
T ss_dssp             CCCCCCCCCCCCCEETTEEEEEEEET-T----------------------TEEEEEEEEESSSSC-HHHHHHHHHHHHTC
T ss_pred             CChHHCEEeEEEecCCCeEEEEEEEC-C----------------------CCEEEEEEECcCcCC-HHHHHHHHHHHHhc
Confidence            35679999999999999999999975 2                      236888877654433 36789999999999


Q ss_pred             CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCe
Q 024842          103 SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPY  182 (262)
Q Consensus       103 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~i  182 (262)
                      +||||+++++++          ...+..+++|||+.+|+|.+++..   ....+++..++.++.|++.||.|||+++  |
T Consensus        57 ~HpnIv~~~g~~----------~~~~~~~iv~Ey~~~g~l~~~~~~---~~~~~~~~~~~~i~~qi~~gl~~LH~~~--i  121 (258)
T d1k2pa_          57 SHEKLVQLYGVC----------TKQRPIFIITEYMANGCLLNYLRE---MRHRFQTQQLLEMCKDVCEAMEYLESKQ--F  121 (258)
T ss_dssp             CCTTBCCEEEEE----------CCSSSEEEEEECCTTEEHHHHHHS---GGGCCCHHHHHHHHHHHHHHHHHHHHTT--B
T ss_pred             CCCceeeEEEEE----------eeCCceEEEEEccCCCcHHHhhhc---cccCCcHHHHHHHHHHHHHHHHHHhhcC--c
Confidence            999999999988          335679999999999999988653   3455899999999999999999999998  9


Q ss_pred             eecCCCCCcEEEecCCCCCCceEEeeccceeeccccC------ccCcccCCcccchhhhhhhhhhhhhcCcccchheehe
Q 024842          183 AHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF------ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMR  256 (262)
Q Consensus       183 vH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~------~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~  256 (262)
                      +||||||+||+++.++    .+||+|||++....+..      ..++..|++||-+..-.     .....||||+|+++|
T Consensus       122 iH~dlk~~Nill~~~~----~~kl~DfG~a~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~-----~~~ksDiwS~G~~l~  192 (258)
T d1k2pa_         122 LHRDLAARNCLVNDQG----VVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLMYSK-----FSSKSDIWAFGVLMW  192 (258)
T ss_dssp             CCSCCSGGGEEECTTC----CEEECCCSSCCBCSSSSCCCCCCSCCCGGGCCHHHHHHCC-----CCHHHHHHHHHHHHH
T ss_pred             ccccccceeEEEcCCC----cEEECcchhheeccCCCceeecccCCCCCcCCcHHhcCCC-----CCcceeecccchhhH
Confidence            9999999999998766    69999999998654332      23455666766443211     112356666666666


Q ss_pred             eccc
Q 024842          257 ELMF  260 (262)
Q Consensus       257 ~l~~  260 (262)
                      ||+|
T Consensus       193 el~t  196 (258)
T d1k2pa_         193 EIYS  196 (258)
T ss_dssp             HHHT
T ss_pred             hHHh
Confidence            6655

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-39  Score=265.13  Aligned_cols=190  Identities=22%  Similarity=0.267  Sum_probs=151.0

Q ss_pred             CceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc---chHHHHHHHHHHHHh-hh
Q 024842           26 NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ---NNEQLEMVREEIRVS-SL  101 (262)
Q Consensus        26 ~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~---~~~~~~~~~~E~~~l-~~  101 (262)
                      ++|++.+.||+|+||+||+|++..+++                      .||+|++...   .....+.+..|..++ +.
T Consensus         2 ddy~i~~~iG~G~fg~Vy~~~~~~t~~----------------------~vAvK~i~k~~~~~~~~~~~~~~e~~~l~~~   59 (320)
T d1xjda_           2 EDFILHKMLGKGSFGKVFLAEFKKTNQ----------------------FFAIKALKKDVVLMDDDVECTMVEKRVLSLA   59 (320)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTTE----------------------EEEEEEEEHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCeEEeeEEecCCCcEEEEEEECCCCC----------------------EEEEEEEchhhccChHHHHHHHHHHHHHHHh
Confidence            579999999999999999999987766                      5777766432   122234556666665 47


Q ss_pred             CCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCC
Q 024842          102 FSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPP  181 (262)
Q Consensus       102 l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~  181 (262)
                      ++||||+++++++          ......|++|||+.+|+|.+++.    ....+++..++.++.||+.||+|||+++  
T Consensus        60 ~~hp~Iv~~~~~~----------~~~~~~yivmEy~~~g~L~~~i~----~~~~~~e~~~~~~~~qi~~al~ylH~~~--  123 (320)
T d1xjda_          60 WEHPFLTHMFCTF----------QTKENLFFVMEYLNGGDLMYHIQ----SCHKFDLSRATFYAAEIILGLQFLHSKG--  123 (320)
T ss_dssp             TTCTTBCCEEEEE----------ECSSEEEEEEECCTTCBHHHHHH----HHSSCCHHHHHHHHHHHHHHHHHHHHTT--
T ss_pred             CCCCcEEEEEEEE----------ccCCceeEEEeecCCCcHHHHhh----ccCCCCHHHHHHHHHHHHHHHHHHHhCC--
Confidence            8999999999998          44677999999999999999987    4455999999999999999999999999  


Q ss_pred             eeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-----ccCcccCCcccchhhhhhhhhhhhhcCcccchheehe
Q 024842          182 YAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMR  256 (262)
Q Consensus       182 ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~  256 (262)
                      |+||||||+|||++.++    .+||+|||+|.......     ..+++.|.+||-+...++     ....|+||+|+++|
T Consensus       124 iiHrDikp~NiL~~~~~----~~kl~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-----~~~~DiwSlGvily  194 (320)
T d1xjda_         124 IVYRDLKLDNILLDKDG----HIKIADFGMCKENMLGDAKTNTFCGTPDYIAPEILLGQKY-----NHSVDWWSFGVLLY  194 (320)
T ss_dssp             CBCCCCCGGGEEECTTS----CEEECCCTTCBCCCCTTCCBCCCCSCGGGCCHHHHTTCCB-----CTHHHHHHHHHHHH
T ss_pred             eeeccCcccceeecCCC----ceeccccchhhhcccccccccccCCCCCcCCHHHHcCCCC-----CchhhhhhhhHHHH
Confidence            99999999999998776    69999999998654322     356777888876543322     12357778888788


Q ss_pred             ecccCC
Q 024842          257 ELMFGR  262 (262)
Q Consensus       257 ~l~~G~  262 (262)
                      +|++|+
T Consensus       195 emltG~  200 (320)
T d1xjda_         195 EMLIGQ  200 (320)
T ss_dssp             HHHHSS
T ss_pred             HHHhCC
Confidence            777774

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-39  Score=264.91  Aligned_cols=192  Identities=22%  Similarity=0.334  Sum_probs=148.8

Q ss_pred             CceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccch--HHHHHHHHHHHHhhhCC
Q 024842           26 NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNN--EQLEMVREEIRVSSLFS  103 (262)
Q Consensus        26 ~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~--~~~~~~~~E~~~l~~l~  103 (262)
                      ++|++.+.||+|+||.||+|.+..+++                      .||+|++.....  ...+.+.+|+.+++.++
T Consensus         2 d~Y~~~~~lG~G~fg~Vy~~~~~~~~~----------------------~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~   59 (298)
T d1gz8a_           2 ENFQKVEKIGEGTYGVVYKARNKLTGE----------------------VVALKKIRLDTETEGVPSTAIREISLLKELN   59 (298)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTCC----------------------EEEEEEEC-------CCHHHHHHHHHHTTCC
T ss_pred             CCCEeccEEecCcCeEEEEEEECCCCC----------------------EEEEEEEehhhcChHHHHHHHHHHHHHHhCC
Confidence            589999999999999999999987655                      677777654322  22467889999999999


Q ss_pred             CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCee
Q 024842          104 HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYA  183 (262)
Q Consensus       104 h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~iv  183 (262)
                      ||||+++++++          .+.+..|++|||+.++ +.+++..  .....+++..++.++.|++.||+|||+++  |+
T Consensus        60 Hp~Iv~~~~~~----------~~~~~~~iv~e~~~~~-~~~~~~~--~~~~~l~e~~~~~~~~qil~~L~yLH~~~--Ii  124 (298)
T d1gz8a_          60 HPNIVKLLDVI----------HTENKLYLVFEFLHQD-LKKFMDA--SALTGIPLPLIKSYLFQLLQGLAFCHSHR--VL  124 (298)
T ss_dssp             CTTBCCEEEEE----------EETTEEEEEEECCSEE-HHHHHHH--TTTTCCCHHHHHHHHHHHHHHHHHHHHTT--CC
T ss_pred             CCcEEEecccc----------ccccceeEEEeecCCc-hhhhhhh--hcccCCCHHHHHHHHHHHHHHHHHhhcCC--EE
Confidence            99999999998          3467899999998654 4444332  23456999999999999999999999999  99


Q ss_pred             ecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-----ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheec
Q 024842          184 HNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMREL  258 (262)
Q Consensus       184 H~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l  258 (262)
                      ||||||+|||++.++    .+||+|||.|.....+.     ..+++.|.+||....-...    ....|+||+|+++|+|
T Consensus       125 HrDiKpeNIl~~~~~----~~kl~DFG~a~~~~~~~~~~~~~~gt~~y~apE~~~~~~~~----~~~~DiwSlGvily~m  196 (298)
T d1gz8a_         125 HRDLKPQNLLINTEG----AIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYY----STAVDIWSLGCIFAEM  196 (298)
T ss_dssp             CSCCCGGGEEECTTS----CEEECSTTHHHHHCCCSBCTTCCBCCCTTCCHHHHTTCSSC----CTHHHHHHHHHHHHHH
T ss_pred             ccccCchheeecccC----cceeccCCcceeccCCcccceeecccceeeehhhhccccCC----CccccccccchhhhHH
Confidence            999999999998776    69999999998665332     2567777777755433221    1235788888888888


Q ss_pred             ccCC
Q 024842          259 MFGR  262 (262)
Q Consensus       259 ~~G~  262 (262)
                      ++|+
T Consensus       197 ~~G~  200 (298)
T d1gz8a_         197 VTRR  200 (298)
T ss_dssp             HHSS
T ss_pred             hhCC
Confidence            8775

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-38  Score=262.86  Aligned_cols=194  Identities=20%  Similarity=0.246  Sum_probs=151.9

Q ss_pred             CceEEEE-EeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhh-hCC
Q 024842           26 NRYRILR-QLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSS-LFS  103 (262)
Q Consensus        26 ~~y~~~~-~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~-~l~  103 (262)
                      ++|++.. .||+|+||.||+|++..+++                      .||+|++...     ..+.+|+.++. ..+
T Consensus        11 ~~y~i~~~~lG~G~fg~Vy~a~~~~~~~----------------------~vAiK~i~~~-----~~~~~E~~~~~~~~~   63 (335)
T d2ozaa1          11 DDYKVTSQVLGLGINGKVLQIFNKRTQE----------------------KFALKMLQDC-----PKARREVELHWRASQ   63 (335)
T ss_dssp             GTEEEEEEEEEECSSCEEEEEEETTTCC----------------------EEEEEEEECS-----HHHHHHHHHHHHHTT
T ss_pred             cCEEEeeEEeeeccCeEEEEEEECCCCC----------------------EEEEEEECCc-----HHHHHHHHHHHHhcC
Confidence            5799875 59999999999999987655                      6778776432     34567888764 558


Q ss_pred             CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCee
Q 024842          104 HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYA  183 (262)
Q Consensus       104 h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~iv  183 (262)
                      ||||++++++|..      ........|++|||+.+|+|.+++...  ....+++.+++.++.||+.||+|||+++  |+
T Consensus        64 hpnIv~l~~~~~~------~~~~~~~~~ivmEy~~gg~L~~~i~~~--~~~~l~e~~~~~i~~qi~~al~ylH~~~--ii  133 (335)
T d2ozaa1          64 CPHIVRIVDVYEN------LYAGRKCLLIVMECLDGGELFSRIQDR--GDQAFTEREASEIMKSIGEAIQYLHSIN--IA  133 (335)
T ss_dssp             STTBCCEEEEEEE------EETTEEEEEEEEECCCSEEHHHHHHSC--SCCCEEHHHHHHHHHHHHHHHHHHHHTT--EE
T ss_pred             CCCCCeEEEEEee------cccCCCEEEEEEECCCCCcHHHHHHhc--CCCCcCHHHHHHHHHHHHHHHHHHHHcC--Cc
Confidence            9999999998731      012246689999999999999988621  2346999999999999999999999999  99


Q ss_pred             ecCCCCCcEEEecCCCCCCceEEeeccceeeccccC----ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecc
Q 024842          184 HNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELM  259 (262)
Q Consensus       184 H~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~  259 (262)
                      ||||||+|||++.++ ....+||+|||+|+......    ..+++.|.+||-+-...+.     ...||||+|+++|+|+
T Consensus       134 HRDiKp~NIll~~~~-~~~~~Kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~y~-----~~~DiwSlGvily~ll  207 (335)
T d2ozaa1         134 HRDVKPENLLYTSKR-PNAILKLTDFGFAKETTSHNSLTTPCYTPYYVAPEVLGPEKYD-----KSCDMWSLGVIMYILL  207 (335)
T ss_dssp             CCCCSGGGEEESCSS-TTCCEEECCCTTCEECCCCCCCCCCSCCCSSCCCCCCCGGGGS-----HHHHHHHHHHHHHHHT
T ss_pred             ccccccccccccccc-ccccccccccceeeeccCCCccccccCCcccCCcHHHcCCCCC-----HHHHHHhhchhHHHHh
Confidence            999999999998643 22369999999998765432    3688899999876543322     2358888888888888


Q ss_pred             cCC
Q 024842          260 FGR  262 (262)
Q Consensus       260 ~G~  262 (262)
                      ||+
T Consensus       208 tg~  210 (335)
T d2ozaa1         208 CGY  210 (335)
T ss_dssp             TSS
T ss_pred             hCC
Confidence            885

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.6e-38  Score=255.03  Aligned_cols=197  Identities=21%  Similarity=0.260  Sum_probs=146.8

Q ss_pred             ecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc-chHHHHHHHHHHHHhhh
Q 024842           23 INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ-NNEQLEMVREEIRVSSL  101 (262)
Q Consensus        23 ~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~-~~~~~~~~~~E~~~l~~  101 (262)
                      +..+.|++.+.||+|+||.||+|.+..++..                  ....||+|++... .......+.+|+.+++.
T Consensus         4 i~~~~~~~~~~iG~G~fG~Vy~~~~~~~~~~------------------~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~   65 (283)
T d1mqba_           4 IHPSCVTRQKVIGAGEFGEVYKGMLKTSSGK------------------KEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQ   65 (283)
T ss_dssp             CCTTTEEEEEEEEECSSSEEEEEEEEC---C------------------CEEEEEEEEECTTCCHHHHHHHHHHHHHHHT
T ss_pred             CCHHHeEeeeEEeeCCCeEEEEEEEeCCCCE------------------EEEEEEEEEECcccChHHHHHHHHHHHHHHh
Confidence            4567899999999999999999998765432                  1236888887554 33445678899999999


Q ss_pred             CCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCC
Q 024842          102 FSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPP  181 (262)
Q Consensus       102 l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~  181 (262)
                      ++||||+++++++          ......+++||++.++++.+.+..   ....+++..+..++.|++.||.|||+++  
T Consensus        66 l~H~nIv~~~g~~----------~~~~~~~~v~e~~~~~~l~~~~~~---~~~~~~~~~~~~i~~~i~~gl~~lH~~~--  130 (283)
T d1mqba_          66 FSHHNIIRLEGVI----------SKYKPMMIITEYMENGALDKFLRE---KDGEFSVLQLVGMLRGIAAGMKYLANMN--  130 (283)
T ss_dssp             CCCTTBCCEEEEE----------CSSSSEEEEEECCTTEEHHHHHHH---TTTCSCHHHHHHHHHHHHHHHHHHHHTT--
T ss_pred             cCCCCEeeeeEEE----------ecCCceEEEEEecccCcchhhhhc---ccccccHHHHHHHHHHHHHhhhhccccc--
Confidence            9999999999987          345678999999999999887652   3456999999999999999999999998  


Q ss_pred             eeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC--------ccCcccCCcccchhhhhhhhhhhhhcCcccchhe
Q 024842          182 YAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF--------ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQI  253 (262)
Q Consensus       182 ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~--------~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~  253 (262)
                      |+||||||+|||++.++    .+||+|||+|+......        ..++..|++||.+..-.     .....||||+|+
T Consensus       131 iiHrDlKp~NILl~~~~----~~Kl~DFGla~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~-----~~~~sDI~S~Gv  201 (283)
T d1mqba_         131 YVHRDLAARNILVNSNL----VCKVSDFGLSRVLEDDPEATYTTSGGKIPIRWTAPEAISYRK-----FTSASDVWSFGI  201 (283)
T ss_dssp             CCCSCCCGGGEEECTTC----CEEECCCCC-----------------CCCGGGSCHHHHHSCC-----CCHHHHHHHHHH
T ss_pred             cccCccccceEEECCCC----eEEEcccchhhcccCCCccceEeccCCCCccccCHHHHccCC-----CCCcccccccHH
Confidence            99999999999998776    79999999998654321        23566788887432211     112346666666


Q ss_pred             eheecccC
Q 024842          254 LMRELMFG  261 (262)
Q Consensus       254 ~~~~l~~G  261 (262)
                      ++|||++|
T Consensus       202 il~el~t~  209 (283)
T d1mqba_         202 VMWEVMTY  209 (283)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHHhC
Confidence            66666654

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-38  Score=258.92  Aligned_cols=195  Identities=18%  Similarity=0.248  Sum_probs=147.4

Q ss_pred             ecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc-chHHHHHHHHHHHHhhh
Q 024842           23 INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ-NNEQLEMVREEIRVSSL  101 (262)
Q Consensus        23 ~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~-~~~~~~~~~~E~~~l~~  101 (262)
                      +...+|++.+.||+|+||.||+|++..+++.+++                  .||+|++... .....+.+.+|+.+++.
T Consensus         6 ~k~~dy~~~~~lG~G~fG~Vy~~~~~~~~~~~~~------------------~vavK~~~~~~~~~~~~~~~~E~~~l~~   67 (317)
T d1xkka_           6 LKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKI------------------PVAIKELREATSPKANKEILDEAYVMAS   67 (317)
T ss_dssp             CCTTTEEEEEEEEECSSEEEEEEEECC----CCE------------------EEEEEEECC----CTHHHHHHHHHHHHH
T ss_pred             CCHHHCEEeeEEecCCCeEEEEEEEcCCCCEEEE------------------EEEEEEeccccCHHHHHHHHHHHHHHHh
Confidence            4456899999999999999999999887765544                  3788876543 23345678999999999


Q ss_pred             CCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCC
Q 024842          102 FSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPP  181 (262)
Q Consensus       102 l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~  181 (262)
                      ++||||+++++++.           ....+++++++.+++|.+.+..   ....+++..++.++.|++.||+|||+++  
T Consensus        68 l~HpnIv~l~g~~~-----------~~~~~~v~e~~~~~~l~~~~~~---~~~~~~~~~~~~i~~qi~~gl~yLH~~~--  131 (317)
T d1xkka_          68 VDNPHVCRLLGICL-----------TSTVQLITQLMPFGCLLDYVRE---HKDNIGSQYLLNWCVQIAKGMNYLEDRR--  131 (317)
T ss_dssp             CCCTTBCCEEEEEE-----------SSSEEEEEECCTTCBHHHHHHH---TSSSCCHHHHHHHHHHHHHHHHHHHHTT--
T ss_pred             CCCCCEeeEEEEEe-----------cCCeeEEEEeccCCcccccccc---cccCCCHHHHHHHHHHHHHHHHHHHHcC--
Confidence            99999999999874           3457888999999999887652   4566999999999999999999999998  


Q ss_pred             eeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-------ccCcccCCcccchhhhhhhhhhhhhcCcccchhee
Q 024842          182 YAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-------ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQIL  254 (262)
Q Consensus       182 ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-------~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~  254 (262)
                      |+||||||+|||++.++    .+||+|||+|.......       ..++..|.+||.+..-.     .....||||+|++
T Consensus       132 iiHrDlKp~NIll~~~~----~~kl~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~-----~~~~sDvwS~Gvi  202 (317)
T d1xkka_         132 LVHRDLAARNVLVKTPQ----HVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRI-----YTHQSDVWSYGVT  202 (317)
T ss_dssp             CCCSCCCGGGEEEEETT----EEEECCCSHHHHTTTTCC--------CCTTTSCHHHHHHCC-----CCHHHHHHHHHHH
T ss_pred             cccCcchhhcceeCCCC----CeEeeccccceecccccccccccccccCccccChHHHhcCC-----CChhhhhhhHHHH
Confidence            99999999999999877    79999999998764322       23567787777442211     1123456666666


Q ss_pred             heeccc
Q 024842          255 MRELMF  260 (262)
Q Consensus       255 ~~~l~~  260 (262)
                      +|||+|
T Consensus       203 l~el~t  208 (317)
T d1xkka_         203 VWELMT  208 (317)
T ss_dssp             HHHHHT
T ss_pred             HHHHHH
Confidence            666655

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.1e-38  Score=253.38  Aligned_cols=195  Identities=18%  Similarity=0.248  Sum_probs=140.2

Q ss_pred             eecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc-chHHHHHHHHHHHHhh
Q 024842           22 WINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ-NNEQLEMVREEIRVSS  100 (262)
Q Consensus        22 ~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~-~~~~~~~~~~E~~~l~  100 (262)
                      .|+.++|++.+.||+|+||.||+|++..++..                   ...+|+|++... .....+.+.+|+.+++
T Consensus         3 ei~~~~~~l~~~iG~G~fg~Vy~a~~~~~~~~-------------------~~~vaik~~~~~~~~~~~~~~~~E~~~l~   63 (273)
T d1mp8a_           3 EIQRERIELGRCIGEGQFGDVHQGIYMSPENP-------------------ALAVAIKTCKNCTSDSVREKFLQEALTMR   63 (273)
T ss_dssp             BCCGGGEEEEEEEEECSSSEEEEEEECCC--C-------------------CEEEEEEECTTTTSHHHHHHHHHHHHHHH
T ss_pred             CcCHHHeEEEEEEeeCCCcEEEEEEEecCCce-------------------eEEEEEEEeccccCHHHHHHHHHHHHHHH
Confidence            36678999999999999999999998765432                   225777776543 3444577999999999


Q ss_pred             hCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCC
Q 024842          101 LFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEP  180 (262)
Q Consensus       101 ~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~  180 (262)
                      .++||||+++++++.           .+..|++|||+.+|++.+++..   ....+++..++.++.|++.||.|||+++ 
T Consensus        64 ~l~HpnIv~l~~~~~-----------~~~~~iv~E~~~~g~l~~~~~~---~~~~l~~~~~~~~~~qi~~gl~ylH~~~-  128 (273)
T d1mp8a_          64 QFDHPHIVKLIGVIT-----------ENPVWIIMELCTLGELRSFLQV---RKYSLDLASLILYAYQLSTALAYLESKR-  128 (273)
T ss_dssp             TCCCTTBCCEEEEEC-----------SSSCEEEEECCTTEEHHHHHHH---TTTTSCHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred             hCCCCCEeeEEEEEe-----------cCeEEEEEEeccCCcHHhhhhc---cCCCCCHHHHHHHHHHHHHHhhhhcccC-
Confidence            999999999999872           3568999999999999987652   4456999999999999999999999998 


Q ss_pred             CeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC------ccCcccCCcccchhhhhhhhhhhhhcCcccchhee
Q 024842          181 PYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF------ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQIL  254 (262)
Q Consensus       181 ~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~------~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~  254 (262)
                       ++||||||+||+++.++    .+||+|||+|.......      ..+++.|.+||.+-.-.     .....||||+|++
T Consensus       129 -iiHrDlKp~NIll~~~~----~~Kl~DfG~a~~~~~~~~~~~~~~~gt~~y~apE~l~~~~-----~~~~~DiwSlGvi  198 (273)
T d1mp8a_         129 -FVHRDIAARNVLVSSND----CVKLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINFRR-----FTSASDVWMFGVC  198 (273)
T ss_dssp             -CCCSCCSGGGEEEEETT----EEEECC-------------------CCGGGCCHHHHHHCC-----CSHHHHHHHHHHH
T ss_pred             -eeccccchhheeecCCC----cEEEccchhheeccCCcceeccceecCcccchhhHhccCC-----CCCccccccchHH
Confidence             99999999999999877    79999999998654322      23455666665332111     1112355555555


Q ss_pred             heeccc
Q 024842          255 MRELMF  260 (262)
Q Consensus       255 ~~~l~~  260 (262)
                      +|||++
T Consensus       199 l~e~lt  204 (273)
T d1mp8a_         199 MWEILM  204 (273)
T ss_dssp             HHHHHT
T ss_pred             HHHHHh
Confidence            555544

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-39  Score=260.78  Aligned_cols=193  Identities=24%  Similarity=0.305  Sum_probs=151.4

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc------hHHHHHHHHHHHH
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN------NEQLEMVREEIRV   98 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~------~~~~~~~~~E~~~   98 (262)
                      .++|++.+.||+|+||.||+|++..+++                      .||+|++....      .....++.+|+.+
T Consensus         3 ~~~Y~i~~~lG~G~fg~Vy~a~~~~~~~----------------------~vAvK~i~~~~~~~~~~~~~~~~~~~E~~i   60 (273)
T d1xwsa_           3 ESQYQVGPLLGSGGFGSVYSGIRVSDNL----------------------PVAIKHVEKDRISDWGELPNGTRVPMEVVL   60 (273)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTCC----------------------EEEEEEEEGGGCCCEEECTTCCEEEHHHHH
T ss_pred             CCeEEEeEEEeeCCCeEEEEEEECCCCC----------------------EEEEEEEehHHccchhhhhHHHHHHHHHHH
Confidence            4689999999999999999999987766                      45666543221      1112335679999


Q ss_pred             hhhCC--CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCC-CchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHH
Q 024842           99 SSLFS--HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLD-GTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHM  175 (262)
Q Consensus        99 l~~l~--h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~l  175 (262)
                      ++.++  ||||+++++++          ...+..+++||++.+ +++.+++.    ....+++.+++.++.|++.||+||
T Consensus        61 l~~l~~~h~nIv~~~~~~----------~~~~~~~lv~e~~~~~~~l~~~~~----~~~~l~e~~~~~~~~qi~~al~~l  126 (273)
T d1xwsa_          61 LKKVSSGFSGVIRLLDWF----------ERPDSFVLILERPEPVQDLFDFIT----ERGALQEELARSFFWQVLEAVRHC  126 (273)
T ss_dssp             HHHHCSSSCSBCCEEEEE----------ECSSEEEEEEECCSSEEEHHHHHH----HHCSCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhccCCCCccEEEEEE----------eeCCeEEEEEEeccCcchHHHHHh----ccCCCCHHHHHHHHHHHHHHHHHH
Confidence            99886  89999999988          446789999999876 56777765    445699999999999999999999


Q ss_pred             HcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC---ccCcccCCcccchhhhhhhhhhhhhcCcccchh
Q 024842          176 HSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF---ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQ  252 (262)
Q Consensus       176 H~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~---~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g  252 (262)
                      |+++  |+||||||+|||++.+..   .+||+|||+|.......   ..|++.|++||-+..-.+.    ....||||+|
T Consensus       127 H~~~--iiHrDiKp~NIll~~~~~---~vkl~DFG~a~~~~~~~~~~~~GT~~y~aPE~~~~~~~~----~~~~DiwSlG  197 (273)
T d1xwsa_         127 HNCG--VLHRDIKDENILIDLNRG---ELKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRYH----GRSAAVWSLG  197 (273)
T ss_dssp             HHTT--EECSCCSGGGEEEETTTT---EEEECCCTTCEECCSSCBCCCCSCGGGSCHHHHHHSCBC----HHHHHHHHHH
T ss_pred             HHCC--CccccCcccceEEecCCC---eEEECccccceecccccccccccCCCcCCHHHHcCCCCC----Ccccccccce
Confidence            9999  999999999999985432   69999999998765432   3578889998876432211    1235899999


Q ss_pred             eeheecccCC
Q 024842          253 ILMRELMFGR  262 (262)
Q Consensus       253 ~~~~~l~~G~  262 (262)
                      +++|+|++|+
T Consensus       198 vilyell~g~  207 (273)
T d1xwsa_         198 ILLYDMVCGD  207 (273)
T ss_dssp             HHHHHHHHSS
T ss_pred             eeehhHhhCC
Confidence            9999999985

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-38  Score=255.89  Aligned_cols=193  Identities=22%  Similarity=0.278  Sum_probs=145.3

Q ss_pred             eeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhh
Q 024842           21 VWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSS  100 (262)
Q Consensus        21 ~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~  100 (262)
                      .-|+.++|++.+.||+|+||.||+|++..+                       ..||+|++..... ..+.+.+|+.+++
T Consensus        12 ~~i~~~~~~i~~~iG~G~fg~Vy~~~~~~~-----------------------~~vAiK~l~~~~~-~~~~~~~E~~~l~   67 (285)
T d1fmka3          12 WEIPRESLRLEVKLGQGCFGEVWMGTWNGT-----------------------TRVAIKTLKPGTM-SPEAFLQEAQVMK   67 (285)
T ss_dssp             SBCCGGGEEEEEEEEECSSCEEEEEEETTT-----------------------EEEEEEECCTTSS-CHHHHHHHHHHHH
T ss_pred             eEcCHHHEEEeeEEeeCCCeEEEEEEECCC-----------------------CEEEEEEECcccC-CHHHHHHHHHHHH
Confidence            336678999999999999999999998643                       2578887754433 2467899999999


Q ss_pred             hCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCC
Q 024842          101 LFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEP  180 (262)
Q Consensus       101 ~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~  180 (262)
                      .++||||+++++++.           .+..+++|||+.+|+|.+++....  ...+++..++.++.|++.||+|||+++ 
T Consensus        68 ~l~h~nIv~~~g~~~-----------~~~~~lv~Ey~~~g~l~~~~~~~~--~~~l~~~~~~~i~~~i~~gl~~LH~~~-  133 (285)
T d1fmka3          68 KLRHEKLVQLYAVVS-----------EEPIYIVTEYMSKGSLLDFLKGET--GKYLRLPQLVDMAAQIASGMAYVERMN-  133 (285)
T ss_dssp             HCCCTTBCCEEEEEC-----------SSSCEEEECCCTTCBHHHHHSHHH--HTTCCHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred             hcccCCEeEEEEEEe-----------cCCeEEEEEecCCCchhhhhhhcc--cccchHHHHHHHHHHHHHHHHHHhhhh-
Confidence            999999999999862           345799999999999998775432  345999999999999999999999999 


Q ss_pred             CeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC------ccCcccCCcccchhhhhhhhhhhhhcCcccchhee
Q 024842          181 PYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF------ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQIL  254 (262)
Q Consensus       181 ~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~------~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~  254 (262)
                       |+||||||+|||++.++    .+||+|||+|+...+..      ..+++.|.+||.+..-.+     ....||||+|++
T Consensus       134 -ivH~DlKp~NIll~~~~----~~kl~DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-----~~ksDI~S~Gii  203 (285)
T d1fmka3         134 -YVHRDLRAANILVGENL----VCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRF-----TIKSDVWSFGIL  203 (285)
T ss_dssp             -CCCSCCSGGGEEECGGG----CEEECCCCTTC--------------CCGGGSCHHHHHHCCC-----CHHHHHHHHHHH
T ss_pred             -eecccccceEEEECCCC----cEEEcccchhhhccCCCceeeccccccccccChHHHhCCCC-----CcHHhhhcchHH
Confidence             99999999999998877    69999999998654322      245667777764422211     112455555555


Q ss_pred             heecccC
Q 024842          255 MRELMFG  261 (262)
Q Consensus       255 ~~~l~~G  261 (262)
                      +|||++|
T Consensus       204 l~el~t~  210 (285)
T d1fmka3         204 LTELTTK  210 (285)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHhC
Confidence            5555553

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-38  Score=255.27  Aligned_cols=196  Identities=19%  Similarity=0.285  Sum_probs=142.6

Q ss_pred             eeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc---chHHHHHHHHHHH
Q 024842           21 VWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ---NNEQLEMVREEIR   97 (262)
Q Consensus        21 ~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~---~~~~~~~~~~E~~   97 (262)
                      -+|+.++|++.+.||+|+||.||+|+......                   ....||+|++...   .....+.+.+|+.
T Consensus         3 ~~i~~~d~~~~~~iG~G~fg~Vy~~~~~~~~~-------------------~~~~vAiK~l~~~~~~~~~~~~~~~~Ei~   63 (273)
T d1u46a_           3 CLIGEKDLRLLEKLGDGSFGVVRRGEWDAPSG-------------------KTVSVAVKCLKPDVLSQPEAMDDFIREVN   63 (273)
T ss_dssp             EECCGGGEEEEEECC----CCCEEEEEECTTS-------------------CEEEEEEEC--------CHHHHHHHHHHH
T ss_pred             eEEchHHeEEEEEEecCCCeEEEEEEEECCCC-------------------cEEEEEEEEEChhhcCCHHHHHHHHHHHH
Confidence            46778899999999999999999998754322                   1225788877543   3445578999999


Q ss_pred             HhhhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHc
Q 024842           98 VSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHS  177 (262)
Q Consensus        98 ~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~  177 (262)
                      +++.++||||+++++++.           ....+++|||+.++++.+.+..   ....+++..++.++.|++.||.|||+
T Consensus        64 ~l~~l~H~nIv~~~g~~~-----------~~~~~lv~e~~~~~~l~~~~~~---~~~~l~~~~~~~~~~qi~~gl~ylH~  129 (273)
T d1u46a_          64 AMHSLDHRNLIRLYGVVL-----------TPPMKMVTELAPLGSLLDRLRK---HQGHFLLGTLSRYAVQVAEGMGYLES  129 (273)
T ss_dssp             HHHHCCCTTBCCEEEEEC-----------SSSCEEEEECCTTCBHHHHHHH---HGGGSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhCCCCCEEEEEEEEe-----------ecchheeeeeecCcchhhhhhc---ccCCCCHHHHHHHHHHHHHHHHHhhh
Confidence            999999999999999873           2457899999999999987653   33459999999999999999999999


Q ss_pred             CCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC--------ccCcccCCcccchhhhhhhhhhhhhcCccc
Q 024842          178 LEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF--------ALGQRRYSCRNGLLSIVLHLSELLSCGTVR  249 (262)
Q Consensus       178 ~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~--------~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~  249 (262)
                      ++  |+||||||+||+++.++    .+||+|||+++......        ..++..|.+||.+..-.+     ....|||
T Consensus       130 ~~--iiHrDikp~NIll~~~~----~vkl~DfGl~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~-----~~~~Di~  198 (273)
T d1u46a_         130 KR--FIHRDLAARNLLLATRD----LVKIGDFGLMRALPQNDDHYVMQEHRKVPFAWCAPESLKTRTF-----SHASDTW  198 (273)
T ss_dssp             TT--EECSCCCGGGEEEEETT----EEEECCCTTCEECCC-CCEEEC-----CCGGGCCHHHHHHCEE-----EHHHHHH
T ss_pred             CC--EeeeeecHHHhcccccc----ceeeccchhhhhcccCCCcceecCccccCcccCCHHHHhCCCC-----Ccchhhh
Confidence            98  99999999999999877    79999999999764332        124445666653322111     1124666


Q ss_pred             chheeheeccc
Q 024842          250 VIQILMRELMF  260 (262)
Q Consensus       250 ~~g~~~~~l~~  260 (262)
                      |+|+++|||++
T Consensus       199 S~Gvil~emlt  209 (273)
T d1u46a_         199 MFGVTLWEMFT  209 (273)
T ss_dssp             HHHHHHHHHHT
T ss_pred             hhHHHHHHHHh
Confidence            66666666654

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.6e-39  Score=262.29  Aligned_cols=187  Identities=24%  Similarity=0.299  Sum_probs=144.9

Q ss_pred             EEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchH-----HHHHHHHHHHHhhhCCC
Q 024842           30 ILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNE-----QLEMVREEIRVSSLFSH  104 (262)
Q Consensus        30 ~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~-----~~~~~~~E~~~l~~l~h  104 (262)
                      .++.||+|+||+||+|++..+++                      .||+|++......     ..+.+.+|+.+++.++|
T Consensus         2 ~l~~lG~G~fg~Vy~~~~~~~~~----------------------~vAvK~i~~~~~~~~~~~~~~~~~~Ei~il~~l~h   59 (299)
T d1ua2a_           2 KLDFLGEGQFATVYKARDKNTNQ----------------------IVAIKKIKLGHRSEAKDGINRTALREIKLLQELSH   59 (299)
T ss_dssp             EEEEEEEETTEEEEEEECSSCCS----------------------EEEEEEC------------CTHHHHHHHHHHHCCC
T ss_pred             cceEeccCcCeEEEEEEECCCCc----------------------EEEEEEEehhhhhhhhHHHHHHHHHHHHHHHhCCC
Confidence            46789999999999999987655                      5777776543221     12467899999999999


Q ss_pred             CCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeee
Q 024842          105 RNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAH  184 (262)
Q Consensus       105 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH  184 (262)
                      |||+++++++          ...+..|++|||+.++++..+..    ....+++..++.++.||+.||+|||+++  |+|
T Consensus        60 pnIv~~~~~~----------~~~~~~~ivmE~~~~~~~~~~~~----~~~~l~~~~~~~~~~qil~aL~~lH~~~--iiH  123 (299)
T d1ua2a_          60 PNIIGLLDAF----------GHKSNISLVFDFMETDLEVIIKD----NSLVLTPSHIKAYMLMTLQGLEYLHQHW--ILH  123 (299)
T ss_dssp             TTBCCEEEEE----------CCTTCCEEEEECCSEEHHHHHTT----CCSSCCSSHHHHHHHHHHHHHHHHHHTT--CCC
T ss_pred             CCEeEEEeee----------ccCCceeehhhhhcchHHhhhhh----cccCCCHHHHHHHHHHHHHHHHHhhccc--eec
Confidence            9999999998          44677999999998877765543    5567999999999999999999999999  999


Q ss_pred             cCCCCCcEEEecCCCCCCceEEeeccceeeccccC-----ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecc
Q 024842          185 NDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELM  259 (262)
Q Consensus       185 ~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~  259 (262)
                      |||||+|||++.++    .+||+|||+|.......     ..+++.|.+||-+.....    .....||||+|+++|||+
T Consensus       124 rDiKp~NIli~~~~----~~KL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~----~~~~~DiwSlGvil~el~  195 (299)
T d1ua2a_         124 RDLKPNNLLLDENG----VLKLADFGLAKSFGSPNRAYTHQVVTRWYRAPELLFGARM----YGVGVDMWAVGCILAELL  195 (299)
T ss_dssp             CCCCGGGEEECTTC----CEEECCCGGGSTTTSCCCCCCCSCCCCTTCCHHHHTTCSC----CCHHHHHHHHHHHHHHHH
T ss_pred             ccCCcceEEecCCC----ccccccCccccccCCCcccccceecChhhccHHHHccCCC----CChhhhhhhcchHHHHHH
Confidence            99999999998776    69999999998665432     246777888775532211    112357888888888888


Q ss_pred             cCC
Q 024842          260 FGR  262 (262)
Q Consensus       260 ~G~  262 (262)
                      +|+
T Consensus       196 ~g~  198 (299)
T d1ua2a_         196 LRV  198 (299)
T ss_dssp             HSS
T ss_pred             hCc
Confidence            774

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-38  Score=257.89  Aligned_cols=202  Identities=18%  Similarity=0.239  Sum_probs=144.5

Q ss_pred             ecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc-chHHHHHHHHHHHHhhh
Q 024842           23 INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ-NNEQLEMVREEIRVSSL  101 (262)
Q Consensus        23 ~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~-~~~~~~~~~~E~~~l~~  101 (262)
                      ++.++|++.+.||+|+||.||+|++...++..                 .++.||+|++... .....+.+..|...+..
T Consensus        10 i~~~~y~~~~~iG~G~fG~Vy~a~~~~~~~~~-----------------~~~~vAvK~l~~~~~~~~~~~~~~e~~~l~~   72 (299)
T d1ywna1          10 FPRDRLKLGKPLGRGAFGQVIEADAFGIDKTA-----------------TCRTVAVKMLKEGATHSEHRALMSELKILIH   72 (299)
T ss_dssp             CCGGGEEEEEEEEECSSCEEEEEEEESTTSSS-----------------CEEEEEEEEC----CHHHHHHHHHHHHHHHH
T ss_pred             ccHHHEEEeeEEeecCCeEEEEEEEcCCCccc-----------------CCeEEEEEEEccccCcHHHHHHHHHHHHHHh
Confidence            66789999999999999999999987654432                 2347899987654 33445667777777766


Q ss_pred             C-CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhh------------cCCCCCHHHHHHHHHHH
Q 024842          102 F-SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQT------------KKEFFSTSDVLQIFYQI  168 (262)
Q Consensus       102 l-~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~------------~~~~~~~~~~~~i~~ql  168 (262)
                      + .|+||+.+++.+.         ......+++|||+.+|+|.+++.....            ....+++..++.++.|+
T Consensus        73 ~~~h~~iv~~~~~~~---------~~~~~~~iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi  143 (299)
T d1ywna1          73 IGHHLNVVNLLGACT---------KPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQV  143 (299)
T ss_dssp             HCCCTTBCCEEEEEC---------STTSCCEEEEECCTTCBHHHHHHHTGGGBCC-----------CBCHHHHHHHHHHH
T ss_pred             hcCCCeEEEeeeeec---------cCCCeEEEEEEecCCCcHHHHHHhccccccccccchhhhhcccCCHHHHHHHHHHH
Confidence            6 6899999988763         334568999999999999999875432            13458999999999999


Q ss_pred             HHHHHHHHcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-------ccCcccCCcccchhhhhhhhhh
Q 024842          169 CAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-------ALGQRRYSCRNGLLSIVLHLSE  241 (262)
Q Consensus       169 ~~~l~~lH~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-------~~~~~~~~~~~d~~s~g~~~~e  241 (262)
                      +.||.|||+++  |+||||||+|||++.++    .+||+|||+|+......       ..+++.|++||-+..-.+    
T Consensus       144 ~~gl~ylH~~~--ivHrDlKp~NILl~~~~----~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~----  213 (299)
T d1ywna1         144 AKGMEFLASRK--CIHRDLAARNILLSEKN----VVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVY----  213 (299)
T ss_dssp             HHHHHHHHHTT--CCCSCCCGGGEEECGGG----CEEECC------CCSCTTSCCTTSCCCGGGGCCHHHHHHCCC----
T ss_pred             HHHHHHHHhCC--CcCCcCCccceeECCCC----cEEEccCcchhhccccccccccCceeeCccccchhHhhcCCC----
Confidence            99999999998  99999999999998877    69999999998654322       246677888774422111    


Q ss_pred             hhhcCcccchheeheecccC
Q 024842          242 LLSCGTVRVIQILMRELMFG  261 (262)
Q Consensus       242 ~~~~~~v~~~g~~~~~l~~G  261 (262)
                       ....||||+|+++|||++|
T Consensus       214 -~~~sDiwS~Gvil~ellt~  232 (299)
T d1ywna1         214 -TIQSDVWSFGVLLWEIFSL  232 (299)
T ss_dssp             -CHHHHHHHHHHHHHHHHTT
T ss_pred             -CcccceeehHHHHHHHHhC
Confidence             1224666666666666554

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

Probab=100.00  E-value=7.1e-39  Score=258.97  Aligned_cols=190  Identities=21%  Similarity=0.265  Sum_probs=149.4

Q ss_pred             CceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc--hHHHHHHHHHHHHhhhCC
Q 024842           26 NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN--NEQLEMVREEIRVSSLFS  103 (262)
Q Consensus        26 ~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~--~~~~~~~~~E~~~l~~l~  103 (262)
                      ++|++.++||+|+||.||+|++. ++                      +.||+|++....  ....+.+.+|+.+++.++
T Consensus         2 ~~Y~~~~~iG~G~fg~Vy~~~~~-~~----------------------~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~   58 (286)
T d1ob3a_           2 EKYHGLEKIGEGTYGVVYKAQNN-YG----------------------ETFALKKIRLEKEDEGIPSTTIREISILKELK   58 (286)
T ss_dssp             CSEEEEEEEEEETTEEEEEEEET-TS----------------------CEEEEEEECCSSGGGCCCHHHHHHHHGGGGCC
T ss_pred             CCceeccEEecCCCcEEEEEEeC-CC----------------------CEEEEEEEehhhcChHHHHHHHHHHHHHHhCC
Confidence            58999999999999999999985 32                      367888775442  222467889999999999


Q ss_pred             CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCee
Q 024842          104 HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYA  183 (262)
Q Consensus       104 h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~iv  183 (262)
                      ||||+++++++          ......+++|+++.++.+..+..    ....+++..++.++.|++.||+|||+.+  |+
T Consensus        59 hpnIv~~~~~~----------~~~~~~~i~~e~~~~~~~~~~~~----~~~~l~~~~~~~i~~qi~~~L~~LH~~~--Iv  122 (286)
T d1ob3a_          59 HSNIVKLYDVI----------HTKKRLVLVFEHLDQDLKKLLDV----CEGGLESVTAKSFLLQLLNGIAYCHDRR--VL  122 (286)
T ss_dssp             CTTBCCEEEEE----------ECSSCEEEEEECCSEEHHHHHHT----STTCCCHHHHHHHHHHHHHHHHHHHHTT--CC
T ss_pred             CCcEEeeeeec----------ccCCceeEEEEeehhhhHHHHHh----hcCCcchhhhHHHHHHHHHHHHHhccCc--EE
Confidence            99999999998          34667889999887766665543    5567999999999999999999999998  99


Q ss_pred             ecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-----ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheec
Q 024842          184 HNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMREL  258 (262)
Q Consensus       184 H~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l  258 (262)
                      ||||||+|||++.++    .+||+|||.|.....+.     ..+++.|.+||.+.+....    ....|+||+|++++||
T Consensus       123 HrDiKp~NIll~~~~----~~kl~DfG~a~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~----~~~~DiwslGv~l~el  194 (286)
T d1ob3a_         123 HRDLKPQNLLINREG----ELKIADFGLARAFGIPVRKYTHEIVTLWYRAPDVLMGSKKY----STTIDIWSVGCIFAEM  194 (286)
T ss_dssp             CSCCCGGGEEECTTS----CEEECCTTHHHHHCC---------CCCTTCCHHHHTTCCSC----CTHHHHHHHHHHHHHH
T ss_pred             ecCCCCceeeEcCCC----CEEecccccceecccCccccceecccchhhhHHHHhCCCCC----CcceeehhcCcHHHHH
Confidence            999999999998877    69999999998765432     2466677777766443211    1235788888888888


Q ss_pred             ccCC
Q 024842          259 MFGR  262 (262)
Q Consensus       259 ~~G~  262 (262)
                      ++|+
T Consensus       195 ~~G~  198 (286)
T d1ob3a_         195 VNGT  198 (286)
T ss_dssp             HHSS
T ss_pred             HHCC
Confidence            8875

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=2.6e-38  Score=257.25  Aligned_cols=202  Identities=19%  Similarity=0.217  Sum_probs=153.6

Q ss_pred             eecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc-chHHHHHHHHHHHHhh
Q 024842           22 WINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ-NNEQLEMVREEIRVSS  100 (262)
Q Consensus        22 ~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~-~~~~~~~~~~E~~~l~  100 (262)
                      .++.++|++.+.||+|+||.||+|++.....                 ..++..||+|++... .....+++.+|+.+++
T Consensus         9 e~p~~~~~~~~~lG~G~fG~Vy~a~~~~~~~-----------------~~~~~~vAvK~i~~~~~~~~~~~~~~E~~il~   71 (301)
T d1lufa_           9 EYPRNNIEYVRDIGEGAFGRVFQARAPGLLP-----------------YEPFTMVAVKMLKEEASADMQADFQREAALMA   71 (301)
T ss_dssp             BCCGGGCEEEEEEEECSSCEEEEEEEETSST-----------------TSSEEEEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred             cCCHHHcEEeEEEeeCCCeEEEEEEECCCcc-----------------CCCCeEEEEEEEChhcChHHHHHHHHHHHHHH
Confidence            3456789999999999999999999764322                 123457899987654 3344577999999999


Q ss_pred             hCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhh--------------------cCCCCCHHH
Q 024842          101 LFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQT--------------------KKEFFSTSD  160 (262)
Q Consensus       101 ~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~--------------------~~~~~~~~~  160 (262)
                      .++||||+++++++          ......+++|+++.+++|.+++.....                    ....+++..
T Consensus        72 ~l~h~niv~~~~~~----------~~~~~~~~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  141 (301)
T d1lufa_          72 EFDNPNIVKLLGVC----------AVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAE  141 (301)
T ss_dssp             TCCCTTBCCEEEEE----------CSSSSCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHH
T ss_pred             hcCCCCcccceeee----------ccCCceEEEEEecCCCcHHHHHHhcCccccccccccccchhhhccccCCCCCCHHH
Confidence            99999999999988          446779999999999999998864221                    123488999


Q ss_pred             HHHHHHHHHHHHHHHHcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-------ccCcccCCcccchh
Q 024842          161 VLQIFYQICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-------ALGQRRYSCRNGLL  233 (262)
Q Consensus       161 ~~~i~~ql~~~l~~lH~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-------~~~~~~~~~~~d~~  233 (262)
                      ++.++.|++.||+|||+++  ++||||||+|||++.++    .+||+|||+|+...+..       ..++..|++||-+.
T Consensus       142 ~~~i~~qi~~gl~ylH~~~--ivHrDlKp~NILld~~~----~~Kl~DFGls~~~~~~~~~~~~~~~~~~~~y~aPE~~~  215 (301)
T d1lufa_         142 QLCIARQVAAGMAYLSERK--FVHRDLATRNCLVGENM----VVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIF  215 (301)
T ss_dssp             HHHHHHHHHHHHHHHHHTT--CCCSCCSGGGEEECGGG----CEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHH
T ss_pred             HHHHHHHHHHHhhhcccCC--eEeeEEcccceEECCCC----cEEEccchhheeccCCccccccCCCCcCcCcCCHHHHc
Confidence            9999999999999999998  99999999999998876    69999999998654332       23445666666443


Q ss_pred             hhhhhhhhhhhcCcccchheeheecccC
Q 024842          234 SIVLHLSELLSCGTVRVIQILMRELMFG  261 (262)
Q Consensus       234 s~g~~~~e~~~~~~v~~~g~~~~~l~~G  261 (262)
                      ...+     ....||||+|+++|||++|
T Consensus       216 ~~~~-----t~ksDVwS~Gvvl~ell~~  238 (301)
T d1lufa_         216 YNRY-----TTESDVWAYGVVLWEIFSY  238 (301)
T ss_dssp             HCCC-----CHHHHHHHHHHHHHHHHTT
T ss_pred             cCCC-----ChhhhhccchhhHHHHHcc
Confidence            2211     1234666666666666555

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.4e-38  Score=257.43  Aligned_cols=199  Identities=20%  Similarity=0.255  Sum_probs=152.1

Q ss_pred             eecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc-chHHHHHHHHHHHHhh
Q 024842           22 WINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ-NNEQLEMVREEIRVSS  100 (262)
Q Consensus        22 ~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~-~~~~~~~~~~E~~~l~  100 (262)
                      +|+.++|++.+.||+|+||.||+|++..++...                    .|++|++... .....+.+.+|+.+++
T Consensus         6 ~i~~~~~~~~~~iG~G~fg~Vy~~~~~~~~~~~--------------------~vaiK~~~~~~~~~~~~~~~~E~~~l~   65 (309)
T d1fvra_           6 VLDWNDIKFQDVIGEGNFGQVLKARIKKDGLRM--------------------DAAIKRMKEYASKDDHRDFAGELEVLC   65 (309)
T ss_dssp             BCCGGGCEEEEEEECGGGCEEEEEEEEETTEEE--------------------EEEEEEEECC------CHHHHHHHHHT
T ss_pred             ccCHHHcEEEEEEeeCCCcEEEEEEECCCCeEE--------------------EEEEEEECcccChHHHHHHHHHHHHHH
Confidence            467789999999999999999999998765521                    4567765433 3334567899999999


Q ss_pred             hC-CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHh------------hhcCCCCCHHHHHHHHHH
Q 024842          101 LF-SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVM------------QTKKEFFSTSDVLQIFYQ  167 (262)
Q Consensus       101 ~l-~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~------------~~~~~~~~~~~~~~i~~q  167 (262)
                      .+ +||||+++++++.          ..+..+++|||+.+|+|.+++...            ......+++..++.++.|
T Consensus        66 ~l~~HpnIv~~~~~~~----------~~~~~~iV~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~q  135 (309)
T d1fvra_          66 KLGHHPNIINLLGACE----------HRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAAD  135 (309)
T ss_dssp             TCCCCTTBCCEEEEEE----------ETTEEEEEECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHH
T ss_pred             hccCCCCEeeEEEEEe----------cCCeeEEEEEecCCCcHHHHHhhccccccchhhhccccccCCCCHHHHHHHHHH
Confidence            98 7999999999983          367899999999999999988532            123456999999999999


Q ss_pred             HHHHHHHHHcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeecccc----CccCcccCCcccchhhhhhhhhhhh
Q 024842          168 ICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSK----FALGQRRYSCRNGLLSIVLHLSELL  243 (262)
Q Consensus       168 l~~~l~~lH~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~----~~~~~~~~~~~~d~~s~g~~~~e~~  243 (262)
                      ++.||.|||+++  |+||||||+|||++.++    .+||+|||+|......    ...++..|.+||.+..-.     ..
T Consensus       136 ia~gl~~lH~~~--iiHrDlkp~NIL~~~~~----~~kl~DfG~a~~~~~~~~~~~~~gt~~y~aPE~l~~~~-----~~  204 (309)
T d1fvra_         136 VARGMDYLSQKQ--FIHRDLAARNILVGENY----VAKIADFGLSRGQEVYVKKTMGRLPVRWMAIESLNYSV-----YT  204 (309)
T ss_dssp             HHHHHHHHHHTT--EECSCCSGGGEEECGGG----CEEECCTTCEESSCEECCC----CCTTTCCHHHHHHCE-----EC
T ss_pred             HHHHHHhhhcCC--ccccccccceEEEcCCC----ceEEccccccccccccccccceecCCcccchHHhccCC-----CC
Confidence            999999999998  99999999999998877    6999999999765432    234667777777553221     11


Q ss_pred             hcCcccchheeheecccC
Q 024842          244 SCGTVRVIQILMRELMFG  261 (262)
Q Consensus       244 ~~~~v~~~g~~~~~l~~G  261 (262)
                      ...||||+|+++|||++|
T Consensus       205 ~~sDvwSfGvil~ell~~  222 (309)
T d1fvra_         205 TNSDVWSYGVLLWEIVSL  222 (309)
T ss_dssp             HHHHHHHHHHHHHHHHTT
T ss_pred             ccceeehhHHHHHHHHhc
Confidence            235666666666666664

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.7e-38  Score=259.92  Aligned_cols=199  Identities=24%  Similarity=0.311  Sum_probs=149.1

Q ss_pred             eeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc-chHHHHHHHHHHHHh
Q 024842           21 VWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ-NNEQLEMVREEIRVS   99 (262)
Q Consensus        21 ~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~-~~~~~~~~~~E~~~l   99 (262)
                      ++--+++|++++.||+|+||.||+|++..+++                      .||+|++... .....+.+.+|+.++
T Consensus         3 ~~~i~~rY~~~~~LG~G~fg~Vy~~~~~~~~~----------------------~vAvK~i~~~~~~~~~~~~~~Ei~il   60 (345)
T d1pmea_           3 VFDVGPRYTNLSYIGEGAYGMVCSAYDNVNKV----------------------RVAIKKISPFEHQTYCQRTLREIKIL   60 (345)
T ss_dssp             CCCCCTTEEEEEECC---CCCEEEEEETTTCS----------------------EEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             ccCcCCCeEEEEEEeeccCeEEEEEEECCCCc----------------------EEEEEEEehhcChHHHHHHHHHHHHH
Confidence            44445789999999999999999999887655                      6788876543 344457788999999


Q ss_pred             hhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCC
Q 024842          100 SLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLE  179 (262)
Q Consensus       100 ~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~  179 (262)
                      +.++||||+++++++..      +.......+++++++.+++|.+++..     ..+++..++.++.|++.||+|||+++
T Consensus        61 ~~l~hp~iv~~~~~~~~------~~~~~~~~~~l~~~~~~g~L~~~l~~-----~~l~~~~i~~i~~qil~al~yLH~~~  129 (345)
T d1pmea_          61 LRFRHENIIGINDIIRA------PTIEQMKDVYLVTHLMGADLYKLLKT-----QHLSNDHICYFLYQILRGLKYIHSAN  129 (345)
T ss_dssp             HHCCCTTBCCCCEEECC------SSTTTCCCEEEEEECCCEEHHHHHHH-----CCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHcCCCCCCcEEEEEee------ccccccceEEEEEeecCCchhhhhhc-----CCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            99999999999988742      11112234555666889999998852     34999999999999999999999999


Q ss_pred             CCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC--------ccCcccCCcccchhhhhhhhhhhhhcCcccch
Q 024842          180 PPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF--------ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVI  251 (262)
Q Consensus       180 ~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~--------~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~  251 (262)
                        |+||||||+|||++.++    .+||+|||+|.......        ..+++.|.+||-+..-..    .....|+||+
T Consensus       130 --iiHRDIKp~NILl~~~~----~~kl~DfG~a~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~----~~~~~DiwSl  199 (345)
T d1pmea_         130 --VLHRDLKPSNLLLNTTC----DLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKG----YTKSIDIWSV  199 (345)
T ss_dssp             --EECCCCCGGGEEECTTC----CEEECCCTTCEECCGGGCBCCTTCCCCSCGGGCCGGGTTTBCS----CSTHHHHHHH
T ss_pred             --CcCCCCCcceEEECCCC----CEEEcccCceeeccCCCccceeeccccccceechHHHhhcCCC----CCchhhhhcc
Confidence              99999999999998776    69999999998654322        246667777775533211    0112478888


Q ss_pred             heeheecccCC
Q 024842          252 QILMRELMFGR  262 (262)
Q Consensus       252 g~~~~~l~~G~  262 (262)
                      |+++|+|++|+
T Consensus       200 G~il~eml~g~  210 (345)
T d1pmea_         200 GCILAEMLSNR  210 (345)
T ss_dssp             HHHHHHHHHSS
T ss_pred             CceehHHhhCC
Confidence            88888888874

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.6e-38  Score=259.42  Aligned_cols=203  Identities=24%  Similarity=0.340  Sum_probs=152.7

Q ss_pred             CCceeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc--chHHHHHHHHH
Q 024842           18 GGDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ--NNEQLEMVREE   95 (262)
Q Consensus        18 ~~~~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~--~~~~~~~~~~E   95 (262)
                      +...|=..++|++++.||+|+||.||+|++..+++                      .||+|++...  .....+.+.+|
T Consensus        10 ~~~~~~~~~~Y~~i~~lG~G~fg~V~~~~~~~~~~----------------------~vAiK~i~~~~~~~~~~~~~~~E   67 (346)
T d1cm8a_          10 TKTAWEVRAVYRDLQPVGSGAYGAVCSAVDGRTGA----------------------KVAIKKLYRPFQSELFAKRAYRE   67 (346)
T ss_dssp             SSSEECCBSSEEEEEEC------CEEEEEETTTCC----------------------EEEEEECSSTTSSHHHHHHHHHH
T ss_pred             cCceeecCCcEEEEEEEecCCCeEEEEEEECCCCC----------------------EEEEEEEchhhcChHHHHHHHHH
Confidence            33445457899999999999999999999987655                      5777776543  34456788899


Q ss_pred             HHHhhhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHH
Q 024842           96 IRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHM  175 (262)
Q Consensus        96 ~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~l  175 (262)
                      +.+++.++||||++++++|...    .........|++|||+ +.+|..++.     ...+++..++.++.||+.||.||
T Consensus        68 i~il~~l~hpniv~l~~~~~~~----~~~~~~~~~~lv~e~~-~~~l~~~~~-----~~~l~~~~~~~~~~qi~~aL~~L  137 (346)
T d1cm8a_          68 LRLLKHMRHENVIGLLDVFTPD----ETLDDFTDFYLVMPFM-GTDLGKLMK-----HEKLGEDRIQFLVYQMLKGLRYI  137 (346)
T ss_dssp             HHHHHHCCBTTBCCCSEEECSC----SSTTTCCCCEEEEECC-SEEHHHHHH-----HCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCCeeEEEEEeccC----ccccccceEEEEEecc-cccHHHHHH-----hccccHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999987421    0011234579999988 566766653     34599999999999999999999


Q ss_pred             HcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC--ccCcccCCcccchhhhhhhhhhhhhcCcccchhe
Q 024842          176 HSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF--ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQI  253 (262)
Q Consensus       176 H~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~--~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~  253 (262)
                      |+++  |+||||||+|||++.++    .+||+|||+|.......  ..+++.|.+||.+.....    .....|+||+|+
T Consensus       138 H~~~--IiHrDiKp~NIL~~~~~----~~kl~Dfg~a~~~~~~~~~~~~t~~y~aPE~~~~~~~----~~~~~DiwSlGv  207 (346)
T d1cm8a_         138 HAAG--IIHRDLKPGNLAVNEDC----ELKILDFGLARQADSEMTGYVVTRWYRAPEVILNWMR----YTQTVDIWSVGC  207 (346)
T ss_dssp             HHTT--EECCCCCGGGEEECTTC----CEEECCCTTCEECCSSCCSSCSCGGGCCTHHHHTTTC----CCTTHHHHHHHH
T ss_pred             HhCC--CcccccCcchhhccccc----ccccccccceeccCCccccccccccccCHHHHcCCCC----CCccchhhcchH
Confidence            9999  99999999999998777    69999999999876543  357778888886643221    122468888888


Q ss_pred             eheecccCC
Q 024842          254 LMRELMFGR  262 (262)
Q Consensus       254 ~~~~l~~G~  262 (262)
                      ++|+|++|+
T Consensus       208 il~ell~g~  216 (346)
T d1cm8a_         208 IMAEMITGK  216 (346)
T ss_dssp             HHHHHHHSS
T ss_pred             HHHHHHHCc
Confidence            888888885

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.5e-37  Score=249.06  Aligned_cols=191  Identities=22%  Similarity=0.261  Sum_probs=145.7

Q ss_pred             CceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc--chHHHHHHHHHHHHhhhCC
Q 024842           26 NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ--NNEQLEMVREEIRVSSLFS  103 (262)
Q Consensus        26 ~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~--~~~~~~~~~~E~~~l~~l~  103 (262)
                      ++|++++.||+|+||+||+|++..+++                      .||+|++...  .....+++.+|+.+++.++
T Consensus         2 ~ry~~i~~LG~G~fg~V~~~~~~~~~~----------------------~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~   59 (292)
T d1unla_           2 QKYEKLEKIGEGTYGTVFKAKNRETHE----------------------IVALKRVRLDDDDEGVPSSALREICLLKELK   59 (292)
T ss_dssp             CSEEEEEEEEECSSSEEEEEEETTTCC----------------------EEEEEEEESSCSSTTHHHHHHHHHHHHTTCC
T ss_pred             CCCEeeeEEecCcCeEEEEEEECCCCc----------------------EEEEEEEehhhCChHHHHHHHHHHHHHHhcC
Confidence            589999999999999999999987655                      5777776433  3344678899999999999


Q ss_pred             CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCee
Q 024842          104 HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYA  183 (262)
Q Consensus       104 h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~iv  183 (262)
                      ||||+++++++          ......+++++++.++++..+..    ....+++..++.++.|++.||+|||+++  |+
T Consensus        60 h~niv~~~~~~----------~~~~~~~iv~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~q~~~aL~~lH~~~--Iv  123 (292)
T d1unla_          60 HKNIVRLHDVL----------HSDKKLTLVFEFCDQDLKKYFDS----CNGDLDPEIVKSFLFQLLKGLGFCHSRN--VL  123 (292)
T ss_dssp             CTTBCCEEEEE----------ECSSEEEEEEECCSEEHHHHHHH----TTTCCCHHHHHHHHHHHHHHHHHHHHTT--EE
T ss_pred             cCCEEeecccc----------ccccceeEEeeeccccccccccc----cccccchhHHHHHHHHHHHHHHHhhcCC--Ee
Confidence            99999999988          44667899999999888877665    5566999999999999999999999999  99


Q ss_pred             ecCCCCCcEEEecCCCCCCceEEeeccceeeccccCc-----cCcccCCcccchhhhhhhhhhhhhcCcccchheeheec
Q 024842          184 HNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKFA-----LGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMREL  258 (262)
Q Consensus       184 H~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~~-----~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l  258 (262)
                      ||||||+|||++.++    .+||+|||.|........     .++..+.+|+-+.....    .....||||+|++++||
T Consensus       124 HrDiKP~NIli~~~~----~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~----~~~~~DiwSlG~il~el  195 (292)
T d1unla_         124 HRDLKPQNLLINRNG----ELKLANFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKL----YSTSIDMWSAGCIFAEL  195 (292)
T ss_dssp             CCCCSGGGEEECTTC----CEEECCCTTCEECCSCCSCCCSCCSCGGGCCHHHHTTCSC----CCTHHHHHHHHHHHHHH
T ss_pred             eecccCcccccccCC----ceeeeecchhhcccCCCccceeeccccchhhhhHhccCCC----CCchhhccccchHHHHH
Confidence            999999999998776    699999999987654332     12222232222211110    11124666666666666


Q ss_pred             ccCC
Q 024842          259 MFGR  262 (262)
Q Consensus       259 ~~G~  262 (262)
                      ++|+
T Consensus       196 l~g~  199 (292)
T d1unla_         196 ANAG  199 (292)
T ss_dssp             TTTS
T ss_pred             hhCC
Confidence            6653

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-37  Score=251.72  Aligned_cols=201  Identities=18%  Similarity=0.220  Sum_probs=152.7

Q ss_pred             ecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc-chHHHHHHHHHHHHhhh
Q 024842           23 INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ-NNEQLEMVREEIRVSSL  101 (262)
Q Consensus        23 ~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~-~~~~~~~~~~E~~~l~~  101 (262)
                      ++.++|++.+.||+|+||.||+|.+....+..                 .+..||+|++... .......+.+|+.+++.
T Consensus        17 i~~~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~-----------------~~~~VAvK~~~~~~~~~~~~~~~~E~~il~~   79 (308)
T d1p4oa_          17 VAREKITMSRELGQGSFGMVYEGVAKGVVKDE-----------------PETRVAIKTVNEAASMRERIEFLNEASVMKE   79 (308)
T ss_dssp             CCGGGEEEEEEEEECSSSEEEEEEEEEEETTE-----------------EEEEEEEEECCTTSCHHHHHHHHHHHHHGGG
T ss_pred             ecHHHeEEeeEEeeCCCeEEEEEEECCcccCC-----------------CCcEEEEEEECcccChHHHHHHHHHHHHHHH
Confidence            77899999999999999999999986532211                 1346899887644 44445678999999999


Q ss_pred             CCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhc------CCCCCHHHHHHHHHHHHHHHHHH
Q 024842          102 FSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTK------KEFFSTSDVLQIFYQICAGLKHM  175 (262)
Q Consensus       102 l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~------~~~~~~~~~~~i~~ql~~~l~~l  175 (262)
                      ++||||+++++.+          ......+++|||+.+|+|.+++......      ...+++..+..++.|++.||.||
T Consensus        80 l~h~nIv~~~~~~----------~~~~~~~lv~e~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ia~gl~~L  149 (308)
T d1p4oa_          80 FNCHHVVRLLGVV----------SQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYL  149 (308)
T ss_dssp             CCCTTBCCEEEEE----------CSSSSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCEeeeeeEE----------ecCCceeEEEeecCCCCHHHHHHhcccccccccccCCCCHHHHHHHHHHHHHHHHHH
Confidence            9999999999988          4466799999999999999988654321      13468899999999999999999


Q ss_pred             HcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-------ccCcccCCcccchhhhhhhhhhhhhcCcc
Q 024842          176 HSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-------ALGQRRYSCRNGLLSIVLHLSELLSCGTV  248 (262)
Q Consensus       176 H~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-------~~~~~~~~~~~d~~s~g~~~~e~~~~~~v  248 (262)
                      |+++  |+||||||+|||++.+.    .+||+|||+|.......       ..+++.|.+|+.+..-.     .....|+
T Consensus       150 H~~~--ivHrDlk~~NiLld~~~----~~Kl~DFGla~~~~~~~~~~~~~~~~~t~~y~aPe~l~~~~-----~~~~~Dv  218 (308)
T d1p4oa_         150 NANK--FVHRDLAARNCMVAEDF----TVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGV-----FTTYSDV  218 (308)
T ss_dssp             HHTT--CBCSCCSGGGEEECTTC----CEEECCTTCCCGGGGGGCEEGGGSSEECGGGCCHHHHHHCC-----CCHHHHH
T ss_pred             hhCC--eeeceEcCCceeecCCc----eEEEeecccceeccCCcceeeccceecccccCCHHHHccCC-----CCccccc
Confidence            9988  99999999999998776    79999999998654322       23556666665432111     1112456


Q ss_pred             cchheeheecccC
Q 024842          249 RVIQILMRELMFG  261 (262)
Q Consensus       249 ~~~g~~~~~l~~G  261 (262)
                      ||+|+++|||+||
T Consensus       219 ~S~G~il~El~t~  231 (308)
T d1p4oa_         219 WSFGVVLWEIATL  231 (308)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             ccHHHHHHHHHhC
Confidence            6666666666555

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.5e-37  Score=244.59  Aligned_cols=190  Identities=20%  Similarity=0.308  Sum_probs=141.5

Q ss_pred             ecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhC
Q 024842           23 INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLF  102 (262)
Q Consensus        23 ~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l  102 (262)
                      +..++|++.+.||+|+||.||+|++..                        ..||+|++....  ..+.+.+|+.+++.+
T Consensus         4 i~~~~~~~~~~lG~G~fg~Vy~~~~~~------------------------~~vAvK~i~~~~--~~~~~~~E~~~l~~l   57 (262)
T d1byga_           4 LNMKELKLLQTIGKGEFGDVMLGDYRG------------------------NKVAVKCIKNDA--TAQAFLAEASVMTQL   57 (262)
T ss_dssp             CCGGGEEEEEEEEECSSCEEEEEEETT------------------------EEEEEEECCCCC----HHHHHTHHHHTTC
T ss_pred             cCHHHeEEeEEEecCCCeEEEEEEECC------------------------eEEEEEEECcHH--HHHHHHHHHHHHHhC
Confidence            556789999999999999999999742                        257888775433  346788999999999


Q ss_pred             CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCe
Q 024842          103 SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPY  182 (262)
Q Consensus       103 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~i  182 (262)
                      +||||+++++++.         ...+..+++|||+.+|+|.+++....  ...+++..++.++.|++.||.|||+.+  |
T Consensus        58 ~HpnIv~~~g~~~---------~~~~~~~lv~ey~~~g~L~~~l~~~~--~~~l~~~~~~~i~~~i~~al~ylH~~~--i  124 (262)
T d1byga_          58 RHSNLVQLLGVIV---------EEKGGLYIVTEYMAKGSLVDYLRSRG--RSVLGGDCLLKFSLDVCEAMEYLEGNN--F  124 (262)
T ss_dssp             CCTTBCCEEEEEC---------CC--CCEEEECCCTTEEHHHHHHHHH--HHHCCHHHHHHHHHHHHHHHHHHHHTT--C
T ss_pred             CCCCEeeEEEEEE---------ecCCcEEEEEeccCCCCHHHHHHhcC--CCCCCHHHHHHHHHHHHhhccccccCc--e
Confidence            9999999999874         23455899999999999999986432  234899999999999999999999988  9


Q ss_pred             eecCCCCCcEEEecCCCCCCceEEeeccceeeccccC--ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheeccc
Q 024842          183 AHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF--ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMF  260 (262)
Q Consensus       183 vH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~--~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~  260 (262)
                      +||||||+|||++.++    .+||+|||++....+..  ..++..|++||.+..-.     .....||||+|+++|||+|
T Consensus       125 vH~dlkp~Nil~~~~~----~~kl~dfg~s~~~~~~~~~~~~~~~y~aPE~l~~~~-----~t~~sDIwSfG~il~el~t  195 (262)
T d1byga_         125 VHRDLAARNVLVSEDN----VAKVSDFGLTKEASSTQDTGKLPVKWTAPEALREKK-----FSTKSDVWSFGILLWEIYS  195 (262)
T ss_dssp             CCSCCSGGGEEECTTS----CEEECCCCC------------CCTTTSCHHHHHHCC-----CCHHHHHHHHHHHHHHHHT
T ss_pred             eccccchHhheecCCC----CEeecccccceecCCCCccccccccCCChHHHhCCC-----CChHHHHHhHHHHHHHHHH
Confidence            9999999999998777    69999999998755432  34566677776443221     1123466666666666655

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-37  Score=257.17  Aligned_cols=196  Identities=23%  Similarity=0.303  Sum_probs=143.9

Q ss_pred             ceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCCCCC
Q 024842           27 RYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSHRN  106 (262)
Q Consensus        27 ~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~h~~  106 (262)
                      +|+..+.||+|+||+||+|++..+++                      .||+|++.....    ...+|+.+++.++|||
T Consensus        21 ~Y~~~k~LG~G~fg~Vy~a~~~~~~~----------------------~vAiK~i~~~~~----~~~~Ei~il~~l~h~n   74 (350)
T d1q5ka_          21 SYTDTKVIGNGSFGVVYQAKLCDSGE----------------------LVAIKKVLQDKR----FKNRELQIMRKLDHCN   74 (350)
T ss_dssp             EEEEEEEEEEETTEEEEEEEETTTCC----------------------EEEEEEEECCSS----SCCHHHHHHHHCCCTT
T ss_pred             CcEeeeEEeeCcCeEEEEEEECCCCC----------------------EEEEEEECccch----HHHHHHHHHHhcCCCC
Confidence            69999999999999999999987765                      567776644322    2236899999999999


Q ss_pred             ccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeeecC
Q 024842          107 LLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHND  186 (262)
Q Consensus       107 i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~d  186 (262)
                      |++++++|...    .........+++|||+.++ +.+.+.........+++..++.++.||+.||+|||+++  |+|||
T Consensus        75 iv~~~~~~~~~----~~~~~~~~~~lv~Ey~~~~-~~~~l~~~~~~~~~l~~~~~~~i~~qil~aL~yLH~~~--IiHrD  147 (350)
T d1q5ka_          75 IVRLRYFFYSS----GEKKDEVYLNLVLDYVPET-VYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFG--ICHRD  147 (350)
T ss_dssp             BCCEEEEEEEC------CCSCCEEEEEEECCSEE-HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTTT--EECCC
T ss_pred             CCcEEEEEEec----CccCCceEEEEEEeccCCc-cHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHHhcC--CcccC
Confidence            99999987421    1112345578999998755 44444433445667999999999999999999999999  99999


Q ss_pred             CCCCcEEEecCCCCCCceEEeeccceeeccccC----ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecccCC
Q 024842          187 VKPGNILITCRKGQPPLAILMDFGSARPAQSKF----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELMFGR  262 (262)
Q Consensus       187 ikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~~G~  262 (262)
                      |||+|||++.++.   .+||+|||++.......    ..++..|.+||.+..-.    ......||||+|+++|||++|+
T Consensus       148 iKp~NILl~~~~~---~~kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~----~~~~~~DIwSlG~il~el~~g~  220 (350)
T d1q5ka_         148 IKPQNLLLDPDTA---VLKLCDFGSAKQLVRGEPNVSYICSRYYRAPELIFGAT----DYTSSIDVWSAGCVLAELLLGQ  220 (350)
T ss_dssp             CCGGGEEECTTTC---CEEECCCTTCEECCTTSCCCSCCSCTTSCCHHHHTTCS----SCCTHHHHHHHHHHHHHHHHTS
T ss_pred             CCcceEEEecCCC---ceeEecccchhhccCCcccccccccccccChHHhhccc----CCCcceeecccceEEEehhhCC
Confidence            9999999986643   59999999998765332    24566666666543211    1112346777777777777664

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-37  Score=251.76  Aligned_cols=198  Identities=20%  Similarity=0.270  Sum_probs=150.6

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCCC
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSH  104 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~h  104 (262)
                      .++|.+.+.||+|+||.||+|+..                        +..||+|++...... ....+.|+..+..++|
T Consensus         2 ~~~~~l~~~iG~G~fg~Vy~~~~~------------------------g~~vAvK~~~~~~~~-~~~~e~ei~~~~~~~H   56 (303)
T d1vjya_           2 ARTIVLQESIGKGRFGEVWRGKWR------------------------GEEVAVKIFSSREER-SWFREAEIYQTVMLRH   56 (303)
T ss_dssp             GGGEEEEEEEECCSSSEEEEEEET------------------------TEEEEEEEECGGGHH-HHHHHHHHHTSTTCCC
T ss_pred             CcEEEEEEEEeeCCCeEEEEEEEC------------------------CEEEEEEEECccchh-HHHHHHHHHHHhhCCC
Confidence            357999999999999999999863                        236888877544332 2333456666778899


Q ss_pred             CCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcC------
Q 024842          105 RNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSL------  178 (262)
Q Consensus       105 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~------  178 (262)
                      |||+++++++..      .+......+++|||+.+|+|.+++.    + ..+++..++.++.|++.||.|+|+.      
T Consensus        57 pnIv~~~~~~~~------~~~~~~~~~lv~Ey~~~g~L~~~l~----~-~~l~~~~~~~~~~~ia~gl~~lH~~~~~~~~  125 (303)
T d1vjya_          57 ENILGFIAADNK------DNGTWTQLWLVSDYHEHGSLFDYLN----R-YTVTVEGMIKLALSTASGLAHLHMEIVGTQG  125 (303)
T ss_dssp             TTBCCEEEEEEE------ECSSSEEEEEEEECCTTCBHHHHHH----H-CCBCHHHHHHHHHHHHHHHHHHHCCBCSTTC
T ss_pred             CcCcceEEEEEe------CCCcceEEEEEEecccCCCHHHHHh----c-CCCCHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence            999999998742      1223346899999999999999985    2 3489999999999999999999973      


Q ss_pred             CCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC---------ccCcccCCcccchhhhhhh-hhhhhhcCcc
Q 024842          179 EPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF---------ALGQRRYSCRNGLLSIVLH-LSELLSCGTV  248 (262)
Q Consensus       179 ~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~---------~~~~~~~~~~~d~~s~g~~-~~e~~~~~~v  248 (262)
                      ..+|+||||||+|||++.++    .+||+|||++.......         ..+++.|.+||-+...... ........||
T Consensus       126 ~~~IvHrDlKp~NILl~~~~----~~Kl~DFGl~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~k~Di  201 (303)
T d1vjya_         126 KPAIAHRDLKSKNILVKKNG----TCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADI  201 (303)
T ss_dssp             BCEEECSCCCGGGEEECTTS----CEEECCCTTCEEEETTTTEECC----CCSCGGGCCHHHHTTCSCTTCHHHHHHHHH
T ss_pred             CCCeeccccCccceEEcCCC----CeEEEecCccccccCCCcceeccccceecccCcCChhhccccccccCCCcCcchhh
Confidence            12399999999999998776    79999999998764322         3578888888865432211 1223345789


Q ss_pred             cchheeheecccCC
Q 024842          249 RVIQILMRELMFGR  262 (262)
Q Consensus       249 ~~~g~~~~~l~~G~  262 (262)
                      ||+|+++|||+||+
T Consensus       202 ~S~Gvvl~el~tg~  215 (303)
T d1vjya_         202 YAMGLVFWEIARRC  215 (303)
T ss_dssp             HHHHHHHHHHHHTB
T ss_pred             hhhHHHHHHHhhCC
Confidence            99999999998873

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.2e-37  Score=249.72  Aligned_cols=191  Identities=20%  Similarity=0.244  Sum_probs=147.0

Q ss_pred             EEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhc-cchHHHHHHHHHHHHhhhCCCCCc
Q 024842           29 RILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLI-QNNEQLEMVREEIRVSSLFSHRNL  107 (262)
Q Consensus        29 ~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~-~~~~~~~~~~~E~~~l~~l~h~~i  107 (262)
                      ++.++||+|+||+||+|++..++..                   ...||+|++.. ......+++.+|+.++++++||||
T Consensus        30 ~~~~~iG~G~fg~Vyk~~~~~~~~~-------------------~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~HpnI   90 (311)
T d1r0pa_          30 HFNEVIGRGHFGCVYHGTLLDNDGK-------------------KIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNV   90 (311)
T ss_dssp             EEEEEEEEETTEEEEEEEECC-----------------------CEEEEEEEECCCCCHHHHHHHHHHHHHHHTCCCTTB
T ss_pred             ccceEEeecCCeEEEEEEEECCCCE-------------------EEEEEEEEECcccCHHHHHHHHHHHHHHHhCCCCCE
Confidence            3468899999999999998765321                   12578887754 355566889999999999999999


Q ss_pred             cchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeeecCC
Q 024842          108 LPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDV  187 (262)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH~di  187 (262)
                      +++++++.         ...+..+++|||+.+++|.+++..   .....++..+..++.|++.||.|+|+.+  |+||||
T Consensus        91 v~~~g~~~---------~~~~~~~lv~E~~~~g~l~~~~~~---~~~~~~~~~~~~i~~qia~gL~~lH~~~--iiHrDL  156 (311)
T d1r0pa_          91 LSLLGICL---------RSEGSPLVVLPYMKHGDLRNFIRN---ETHNPTVKDLIGFGLQVAKGMKFLASKK--FVHRDL  156 (311)
T ss_dssp             CCCCEEEE---------ETTTEEEEEEECCTTCBHHHHHHC---TTCCCBHHHHHHHHHHHHHHHHHHHHTT--CCCSCC
T ss_pred             eEEeEEEE---------ecCCceEEEEEEeecCchhhhhcc---ccccchHHHHHHHHHHHHHhhhhhcccC--cccCCc
Confidence            99999863         224578999999999999998752   3445788899999999999999999988  999999


Q ss_pred             CCCcEEEecCCCCCCceEEeeccceeeccccC---------ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheec
Q 024842          188 KPGNILITCRKGQPPLAILMDFGSARPAQSKF---------ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMREL  258 (262)
Q Consensus       188 kp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~---------~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l  258 (262)
                      ||+|||++.++    .+||+|||+++......         ..++..|.+||.+..-.     ....+||||+|+++|||
T Consensus       157 K~~NILl~~~~----~~kL~DFG~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-----~~~ksDI~SfGivl~El  227 (311)
T d1r0pa_         157 AARNCMLDEKF----TVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQTQK-----FTTKSDVWSFGVLLWEL  227 (311)
T ss_dssp             SGGGEEECTTC----CEEECSSGGGCCTTTTTCCCTTCTTCSSCCGGGSCHHHHHHCC-----CCHHHHHHHHHHHHHHH
T ss_pred             cHHhEeECCCC----CEEEecccchhhccccccccceecccccccccccChHHHhcCC-----CCChhHhhhhHHHHHHH
Confidence            99999998765    79999999998764332         23556677776543321     22235777777777777


Q ss_pred             ccC
Q 024842          259 MFG  261 (262)
Q Consensus       259 ~~G  261 (262)
                      ++|
T Consensus       228 ~t~  230 (311)
T d1r0pa_         228 MTR  230 (311)
T ss_dssp             HTT
T ss_pred             HHC
Confidence            775

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=100.00  E-value=5.9e-37  Score=252.27  Aligned_cols=190  Identities=18%  Similarity=0.298  Sum_probs=147.1

Q ss_pred             cCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCC
Q 024842           24 NENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFS  103 (262)
Q Consensus        24 ~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~  103 (262)
                      +.++|+++++||+|+||+||+|++..+++                      .||+|++....   .+++.+|+.+++.++
T Consensus        33 ~~d~y~i~~~LG~G~fg~V~~a~~~~~~~----------------------~vAiK~i~~~~---~~~~~~Ei~il~~l~   87 (328)
T d3bqca1          33 NQDDYQLVRKLGRGKYSEVFEAINITNNE----------------------KVVVKILKPVK---KKKIKREIKILENLR   87 (328)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEETTTTE----------------------EEEEEEECSSC---HHHHHHHHHHHHHHT
T ss_pred             CCcCeEEEEEEecCcCeEEEEEEECCCCC----------------------EEEEEEECHHH---HHHHHHHHHHHHhcc
Confidence            45789999999999999999999987655                      67777765433   356788999999985


Q ss_pred             -CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCe
Q 024842          104 -HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPY  182 (262)
Q Consensus       104 -h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~i  182 (262)
                       ||||++++++|.        .......+++|||+.+++|.++.       ..+++..++.++.||+.||+|||+++  |
T Consensus        88 ~hpnIv~~~~~~~--------~~~~~~~~~v~e~~~~~~L~~~~-------~~l~e~~i~~i~~qil~aL~~LH~~g--I  150 (328)
T d3bqca1          88 GGPNIITLADIVK--------DPVSRTPALVFEHVNNTDFKQLY-------QTLTDYDIRFYMYEILKALDYCHSMG--I  150 (328)
T ss_dssp             TSTTBCCEEEEEE--------CTTTCSEEEEEECCCSCBGGGTT-------TSCCHHHHHHHHHHHHHHHHHHHHTT--E
T ss_pred             CCCCCcEEEEEEE--------ecCCCceeEEEeecCCCcHHHHh-------cCCCHHHHHHHHHHHHHHHHHHhhcc--c
Confidence             999999999873        13345689999999999987653       24999999999999999999999999  9


Q ss_pred             eecCCCCCcEEEecCCCCCCceEEeeccceeeccccC----ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheec
Q 024842          183 AHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMREL  258 (262)
Q Consensus       183 vH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l  258 (262)
                      +||||||+|||++.++.   .+||+|||+|....+..    ..+++.|.+||.+.....    .-...|+||+|+++++|
T Consensus       151 vHrDiKp~NILi~~~~~---~vkl~DFG~a~~~~~~~~~~~~~~t~~y~aPE~~~~~~~----~~~~~DiwslG~~l~e~  223 (328)
T d3bqca1         151 MHRDVKPHNVMIDHEHR---KLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDYQM----YDYSLDMWSLGCMLASM  223 (328)
T ss_dssp             ECCCCSGGGEEEETTTT---EEEECCGGGCEECCTTCCCCSCCSCGGGCCHHHHTTCCC----CCTHHHHHHHHHHHHHH
T ss_pred             ccccccccceEEcCCCC---eeeecccccceeccCCCcccccccCccccCcccccCCCC----CCcccchhhhhhhhHHh
Confidence            99999999999986543   58999999998765432    245666767664432210    11124677777777777


Q ss_pred             ccCC
Q 024842          259 MFGR  262 (262)
Q Consensus       259 ~~G~  262 (262)
                      ++|+
T Consensus       224 ~~g~  227 (328)
T d3bqca1         224 IFRK  227 (328)
T ss_dssp             HHTC
T ss_pred             ccCC
Confidence            6664

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.9e-38  Score=256.61  Aligned_cols=196  Identities=23%  Similarity=0.293  Sum_probs=151.3

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc----chHHHHHHHHHHHHhh
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ----NNEQLEMVREEIRVSS  100 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~----~~~~~~~~~~E~~~l~  100 (262)
                      -++|++.+.||+|+||+||+|++.....                   .+..||+|.+...    +....+.+.+|+.+++
T Consensus        23 l~~y~~~~~IG~G~fg~Vy~~~~~~~~~-------------------~g~~vAvK~i~~~~~~~~~~~~~~~~~E~~il~   83 (322)
T d1vzoa_          23 IENFELLKVLGTGAYGKVFLVRKISGHD-------------------TGKLYAMKVLKKATIVQKAKTTEHTRTERQVLE   83 (322)
T ss_dssp             GGGEEEEEEEEETTTEEEEEEEECSSTT-------------------TTCEEEEEEESEEEEEEEESSGGGCCCHHHHHH
T ss_pred             hhceEEEEEEecCCCeEEEEEEECccCC-------------------CCcEEEEEEEehHHhccchHHHHHHHHHHHHHH
Confidence            4789999999999999999998754322                   2347888876532    2223456788999999


Q ss_pred             hCCC-CCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCC
Q 024842          101 LFSH-RNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLE  179 (262)
Q Consensus       101 ~l~h-~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~  179 (262)
                      .++| |||+++++.+          .+....+++||++.+++|.+++.    ....+++..++.++.||+.||+|+|+++
T Consensus        84 ~l~h~pnIv~~~~~~----------~~~~~~~~v~e~~~~~~L~~~i~----~~~~~~e~~~~~~~~Qi~~al~~lH~~~  149 (322)
T d1vzoa_          84 HIRQSPFLVTLHYAF----------QTETKLHLILDYINGGELFTHLS----QRERFTEHEVQIYVGEIVLALEHLHKLG  149 (322)
T ss_dssp             HHHTCTTBCCEEEEE----------EETTEEEEEECCCCSCBHHHHHH----HHSCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             hccCCCeEEEeeeee----------ccCCceeeeeecccccHHHHHHH----hcccccHHHHHHHHHHHHHHHHHhhcCC
Confidence            9977 8999999887          44678999999999999999886    4455899999999999999999999999


Q ss_pred             CCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC------ccCcccCCcccchhhhhhhhhhhhhcCcccchhe
Q 024842          180 PPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF------ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQI  253 (262)
Q Consensus       180 ~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~------~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~  253 (262)
                        |+||||||+|||++.++    .+||+|||+|.......      ..+++.|.+|+.+......   .....||||+|+
T Consensus       150 --ivHrDiKp~Nill~~~~----~vkL~DFG~a~~~~~~~~~~~~~~~g~~~~~~pe~~~~~~~~---~~~ksDIWSlG~  220 (322)
T d1vzoa_         150 --IIYRDIKLENILLDSNG----HVVLTDFGLSKEFVADETERAYDFCGTIEYMAPDIVRGGDSG---HDKAVDWWSLGV  220 (322)
T ss_dssp             --CCCCCCCGGGEEECTTS----CEEESCSSEEEECCGGGGGGGCGGGSCCTTCCHHHHTTCC------CTHHHHHHHHH
T ss_pred             --EEeccCCccceeecCCC----CEEEeeccchhhhcccccccccccccccccchhHHhhcCCcC---CCchhhhHHHHH
Confidence              99999999999998776    69999999998764322      2455566666555322111   112357888888


Q ss_pred             eheecccCC
Q 024842          254 LMRELMFGR  262 (262)
Q Consensus       254 ~~~~l~~G~  262 (262)
                      ++|+|++|+
T Consensus       221 iLyelltG~  229 (322)
T d1vzoa_         221 LMYELLTGA  229 (322)
T ss_dssp             HHHHHHHSS
T ss_pred             HHHHHHhCC
Confidence            888887774

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-36  Score=248.40  Aligned_cols=200  Identities=22%  Similarity=0.286  Sum_probs=152.3

Q ss_pred             ecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc-chHHHHHHHHHHHHhhh
Q 024842           23 INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ-NNEQLEMVREEIRVSSL  101 (262)
Q Consensus        23 ~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~-~~~~~~~~~~E~~~l~~  101 (262)
                      ++.++|++.+.||+|+||.||+|++......                 ..+..||+|++... .......+.+|+.+++.
T Consensus        20 ~~~~~~~l~~~iG~G~fg~Vy~a~~~~~~~~-----------------~~~~~vAvK~i~~~~~~~~~~~~~~E~~~~~~   82 (311)
T d1t46a_          20 FPRNRLSFGKTLGAGAFGKVVEATAYGLIKS-----------------DAAMTVAVKMLKPSAHLTEREALMSELKVLSY   82 (311)
T ss_dssp             CCGGGEEEEEEEEECSSEEEEEEEEESSSST-----------------TCEEEEEEEEECTTCCHHHHHHHHHHHHHHHH
T ss_pred             CCHHHeEEeeEEeecCCeEEEEEEEeccccC-----------------CCCeEEEEEEECcccCHHHHHHHHHHHHHHHh
Confidence            6778999999999999999999997543221                 13457899988654 44556678899999999


Q ss_pred             C-CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhh--------------cCCCCCHHHHHHHHH
Q 024842          102 F-SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQT--------------KKEFFSTSDVLQIFY  166 (262)
Q Consensus       102 l-~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~--------------~~~~~~~~~~~~i~~  166 (262)
                      + +||||+++++++          ......+++|||+.+++|.+++.....              ....+++..+..++.
T Consensus        83 l~~HpnIv~~~g~~----------~~~~~~~lvmE~~~~g~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  152 (311)
T d1t46a_          83 LGNHMNIVNLLGAC----------TIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSY  152 (311)
T ss_dssp             HCCCTTBCCEEEEE----------CSSSSCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHH
T ss_pred             ccCCCCEEEEEEEE----------eeCCEEEEEEEcCCCCCHHHHHHhccccccccccccccccccccCCCHHHHHHHHH
Confidence            8 699999999998          446679999999999999998864321              223589999999999


Q ss_pred             HHHHHHHHHHcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-------ccCcccCCcccchhhhhhhh
Q 024842          167 QICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-------ALGQRRYSCRNGLLSIVLHL  239 (262)
Q Consensus       167 ql~~~l~~lH~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-------~~~~~~~~~~~d~~s~g~~~  239 (262)
                      |++.||+|||+++  ++||||||+||+++.++    .++|+|||.++......       ..+++.|.+||.+....   
T Consensus       153 qi~~gl~~LH~~~--ivHrDLKp~NIl~~~~~----~~ki~DfG~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~---  223 (311)
T d1t46a_         153 QVAKGMAFLASKN--CIHRDLAARNILLTHGR----ITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCV---  223 (311)
T ss_dssp             HHHHHHHHHHHTT--CCCSCCSGGGEEEETTT----EEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHHHCC---
T ss_pred             HHHHHHHHHHhCC--eeecccccccccccccC----cccccccchheeccCCCcceEeeecccChHHcCHHHhcCCC---
Confidence            9999999999999  99999999999998776    79999999998665322       24556666666432211   


Q ss_pred             hhhhhcCcccchheeheeccc
Q 024842          240 SELLSCGTVRVIQILMRELMF  260 (262)
Q Consensus       240 ~e~~~~~~v~~~g~~~~~l~~  260 (262)
                        .....||||+|+++|||+|
T Consensus       224 --~~~~~DIwS~G~~l~ellt  242 (311)
T d1t46a_         224 --YTFESDVWSYGIFLWELFS  242 (311)
T ss_dssp             --CCHHHHHHHHHHHHHHHHT
T ss_pred             --CCCcccccchHHHHHHHHh
Confidence              1112455666666666555

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3e-36  Score=244.69  Aligned_cols=204  Identities=20%  Similarity=0.298  Sum_probs=146.6

Q ss_pred             eeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccc-hHHHHHHHHHHHHh
Q 024842           21 VWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQN-NEQLEMVREEIRVS   99 (262)
Q Consensus        21 ~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~-~~~~~~~~~E~~~l   99 (262)
                      ..++.++|++.+.||+|+||.||+|+...+++...               .....||+|++.... ......+..|...+
T Consensus         8 ~~i~~~~~~l~~~iG~G~fg~Vy~~~~~~~~~~~~---------------~~~~~vAvK~~~~~~~~~~~~~~~~e~~~l   72 (299)
T d1fgka_           8 WELPRDRLVLGKPLGEGAFGQVVLAEAIGLDKDKP---------------NRVTKVAVKMLKSDATEKDLSDLISEMEMM   72 (299)
T ss_dssp             TBCCGGGEEEEEECC-----CEEEEEEECC----C---------------CCEEEEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred             CcccHHHeEEeeEEeecCCcEEEEEEEcCCCcccc---------------cCceEEEEEEECcccChHHHHHHHHHHHHH
Confidence            34778999999999999999999999876543211               123468899886553 34457788888888


Q ss_pred             hhC-CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhh------------cCCCCCHHHHHHHHH
Q 024842          100 SLF-SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQT------------KKEFFSTSDVLQIFY  166 (262)
Q Consensus       100 ~~l-~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~------------~~~~~~~~~~~~i~~  166 (262)
                      ..+ +||||+++++++          ...+..+++|||+.+|+|.+++.....            ....+++.+++.++.
T Consensus        73 ~~~~~HpnIv~~~~~~----------~~~~~~~~v~e~~~~g~l~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  142 (299)
T d1fgka_          73 KMIGKHKNIINLLGAC----------TQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAY  142 (299)
T ss_dssp             HHHCCCTTBCCEEEEE----------CSSSSCEEEECCCTTCBHHHHHHTTSCC------------CCCCCHHHHHHHHH
T ss_pred             HHhcCCCeEEeccccc----------ccCCeEEEEEEccCCCcHHHHHHhhcCCccccccccccCccccCCHHHHHHHHH
Confidence            777 799999999998          336779999999999999999864321            124589999999999


Q ss_pred             HHHHHHHHHHcCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC-------ccCcccCCcccchhhhhhhh
Q 024842          167 QICAGLKHMHSLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF-------ALGQRRYSCRNGLLSIVLHL  239 (262)
Q Consensus       167 ql~~~l~~lH~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~-------~~~~~~~~~~~d~~s~g~~~  239 (262)
                      |++.||+|||+++  |+||||||+|||++.++    .+||+|||++.......       ..+++.|.+||.+..-.+  
T Consensus       143 qi~~al~ylH~~~--ivHrDiKp~NiLl~~~~----~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~l~~~~y--  214 (299)
T d1fgka_         143 QVARGMEYLASKK--CIHRDLAARNVLVTEDN----VMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIY--  214 (299)
T ss_dssp             HHHHHHHHHHHTT--CCCSCCSGGGEEECTTC----CEEECSTTCCCCGGGCCTTCCCTTSCCGGGGSCHHHHHHCCC--
T ss_pred             HHHHHHHHhhhCC--EEeeeecccceeecCCC----CeEeccchhhccccccccccccccCCCChhhhhhhHhcCCCC--
Confidence            9999999999999  99999999999998877    69999999998765432       235556666653322111  


Q ss_pred             hhhhhcCcccchheeheeccc
Q 024842          240 SELLSCGTVRVIQILMRELMF  260 (262)
Q Consensus       240 ~e~~~~~~v~~~g~~~~~l~~  260 (262)
                         ....||||+|+++|||++
T Consensus       215 ---~~k~DiwS~Gvvl~ell~  232 (299)
T d1fgka_         215 ---THQSDVWSFGVLLWEIFT  232 (299)
T ss_dssp             ---CHHHHHHHHHHHHHHHHT
T ss_pred             ---CchhhhHHhHHHHHHhcc
Confidence               112355555555555554

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.7e-37  Score=249.97  Aligned_cols=199  Identities=22%  Similarity=0.301  Sum_probs=148.3

Q ss_pred             cCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccch--HHHHHHHHHHHHhhh
Q 024842           24 NENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNN--EQLEMVREEIRVSSL  101 (262)
Q Consensus        24 ~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~--~~~~~~~~E~~~l~~  101 (262)
                      ..++|++++.||+|+||+||+|++..++.                     +.||+|++.....  .....+.+|+.+++.
T Consensus         5 ~~~~Y~i~~~LG~G~fg~V~~a~~~~~~~---------------------~~vAiK~i~~~~~~~~~~~~~~~E~~~l~~   63 (305)
T d1blxa_           5 ADQQYECVAEIGEGAYGKVFKARDLKNGG---------------------RFVALKRVRVQTGEEGMPLSTIREVAVLRH   63 (305)
T ss_dssp             GGGTEEEEEEEEEETTEEEEEEEETTTTT---------------------EEEEEEEEEEEBCTTSCBCTHHHHHHHHHH
T ss_pred             CcCCEEEEEEEecccCeEEEEEEEECCCC---------------------EEEEEEEEehhhccchHHHHHHHHHHHHHH
Confidence            45799999999999999999999865422                     2577777654321  112234566666555


Q ss_pred             ---CCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcC
Q 024842          102 ---FSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSL  178 (262)
Q Consensus       102 ---l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~  178 (262)
                         ++||||+++++++...     ........+++||++.++.+.....   .....+++..++.++.|++.||+|||++
T Consensus        64 l~~~~HpnIv~~~~~~~~~-----~~~~~~~~~~~~e~~~~~~~~~~~~---~~~~~~~~~~~~~~~~qi~~aL~yLH~~  135 (305)
T d1blxa_          64 LETFEHPNVVRLFDVCTVS-----RTDRETKLTLVFEHVDQDLTTYLDK---VPEPGVPTETIKDMMFQLLRGLDFLHSH  135 (305)
T ss_dssp             HHHTCCTTBCCEEEEEEEE-----ECSSEEEEEEEEECCSCBHHHHHHH---SCTTCSCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HhhcCCCCcceeeeeeccc-----ccccCceEEEEEEeccCCchhhhhh---ccCCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence               4899999999887310     1133567899999998877654332   2445699999999999999999999999


Q ss_pred             CCCeeecCCCCCcEEEecCCCCCCceEEeeccceeecccc----CccCcccCCcccchhhhhhhhhhhhhcCcccchhee
Q 024842          179 EPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSK----FALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQIL  254 (262)
Q Consensus       179 ~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~----~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~  254 (262)
                      +  |+||||||+|||++.++    .+||+|||++......    ...+++.|.+||-+....+.     ...||||+|++
T Consensus       136 ~--ivHrDiKp~NILi~~~~----~~kl~dfg~~~~~~~~~~~~~~~gT~~Y~APE~~~~~~y~-----~~~DiwSlG~i  204 (305)
T d1blxa_         136 R--VVHRDLKPQNILVTSSG----QIKLADFGLARIYSFQMALTSVVVTLWYRAPEVLLQSSYA-----TPVDLWSVGCI  204 (305)
T ss_dssp             T--CCCCCCCGGGEEECTTC----CEEECSCCSCCCCCGGGGGCCCCCCCTTCCHHHHTTCCCC-----THHHHHHHHHH
T ss_pred             C--EEecCCCccEEEEcCCC----CeeecchhhhhhhcccccCCCcccChhhcCcchhcCCCCC-----hhehhhchHHH
Confidence            9  99999999999998776    6999999998865432    34678889888866443322     23588888888


Q ss_pred             heecccCC
Q 024842          255 MRELMFGR  262 (262)
Q Consensus       255 ~~~l~~G~  262 (262)
                      +|||++|+
T Consensus       205 l~ell~g~  212 (305)
T d1blxa_         205 FAEMFRRK  212 (305)
T ss_dssp             HHHHHHSS
T ss_pred             HHHHHHCC
Confidence            88888875

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.9e-37  Score=253.87  Aligned_cols=202  Identities=25%  Similarity=0.338  Sum_probs=146.2

Q ss_pred             CceeecCCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc--chHHHHHHHHHH
Q 024842           19 GDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ--NNEQLEMVREEI   96 (262)
Q Consensus        19 ~~~~~~~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~--~~~~~~~~~~E~   96 (262)
                      .++|-..++|++.+.||+|+||+||+|++..+++                      .||+|++...  .....+.+.+|+
T Consensus        11 ~~~~~~~~rY~i~~~LG~G~fg~Vy~a~~~~~~~----------------------~vAiK~i~~~~~~~~~~~~~~~Ei   68 (348)
T d2gfsa1          11 KTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGL----------------------RVAVKKLSRPFQSIIHAKRTYREL   68 (348)
T ss_dssp             SSEEEEETTEEEEEECGGGTTSSEEEEEETTTTE----------------------EEEEEECSCTTSSHHHHHHHHHHH
T ss_pred             CccccCCCCeEEEEEEecCCCeEEEEEEECCCCC----------------------EEEEEEECchhcChHHHHHHHHHH
Confidence            3455446789999999999999999999987655                      6788876543  344456788999


Q ss_pred             HHhhhCCCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHH
Q 024842           97 RVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMH  176 (262)
Q Consensus        97 ~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH  176 (262)
                      .+++.++|||++++++++...     ........+++|+++.+++|.+++.     ...+++..++.++.||+.||+|||
T Consensus        69 ~il~~l~h~~iv~~~~~~~~~-----~~~~~~~~~~i~~~~~gg~L~~~~~-----~~~l~e~~~~~i~~qil~aL~~LH  138 (348)
T d2gfsa1          69 RLLKHMKHENVIGLLDVFTPA-----RSLEEFNDVYLVTHLMGADLNNIVK-----CQKLTDDHVQFLIYQILRGLKYIH  138 (348)
T ss_dssp             HHHHHCCCTTBCCCSEEECSC-----SSTTTCCCCEEEEECCSEEHHHHHT-----TCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCCCCeeeEEEEEeec-----cccccCceEEEEEeecCCchhhhcc-----cccccHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999887421     0012334566677789999999874     345999999999999999999999


Q ss_pred             cCCCCeeecCCCCCcEEEecCCCCCCceEEeeccceeeccccC--ccCcccCCcccchhhhhhhhhhhhhcCcccchhee
Q 024842          177 SLEPPYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF--ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQIL  254 (262)
Q Consensus       177 ~~~~~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~--~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~  254 (262)
                      +++  |+||||||+|||++.++    .+|++|||++.......  ..++..|.+||.......    .....|+||+|++
T Consensus       139 ~~g--iiHrDiKp~NILi~~~~----~~kl~dfg~a~~~~~~~~~~~g~~~y~apE~~~~~~~----~~~~~DiwSlGv~  208 (348)
T d2gfsa1         139 SAD--IIHRDLKPSNLAVNEDC----ELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMH----YNQTVDIWSVGCI  208 (348)
T ss_dssp             HTT--CCCCCCCGGGEEECTTC----CEEECCC----CCTGGGSSSCHHHHTSCHHHHTTCSC----CCTTHHHHHHHHH
T ss_pred             hCC--CcccccCCccccccccc----cccccccchhcccCcccccccccccccCchhhcCCcc----CCcccchhhhhHH
Confidence            999  99999999999998777    69999999998665332  234455555554322111    1112466666666


Q ss_pred             heecccCC
Q 024842          255 MRELMFGR  262 (262)
Q Consensus       255 ~~~l~~G~  262 (262)
                      +|+|++|+
T Consensus       209 l~~ll~g~  216 (348)
T d2gfsa1         209 MAELLTGR  216 (348)
T ss_dssp             HHHHHHSS
T ss_pred             HHHHHhCC
Confidence            66666663

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.4e-37  Score=250.65  Aligned_cols=200  Identities=23%  Similarity=0.260  Sum_probs=146.2

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc--chHHHHHHHHHHHHhhhC
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ--NNEQLEMVREEIRVSSLF  102 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~--~~~~~~~~~~E~~~l~~l  102 (262)
                      -++|++++.||+|+||+||+|++..+++                      .||+|++...  ......++.+|+.+++.+
T Consensus         9 ~~rY~i~~~LG~G~fg~Vy~a~~~~~~~----------------------~vAvK~i~~~~~~~~~~~~~~~E~~il~~l   66 (318)
T d3blha1           9 VSKYEKLAKIGQGTFGEVFKARHRKTGQ----------------------KVALKKVLMENEKEGFPITALREIKILQLL   66 (318)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEETTTCC----------------------EEEEEEC----CTTSSCHHHHHHHHHHHHC
T ss_pred             cCCEEEEEEEecCcCeEEEEEEECCCCC----------------------EEEEEEEehhhcchHHHHHHHHHHHHHHHh
Confidence            3799999999999999999999987655                      5777765433  222345678999999999


Q ss_pred             CCCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCe
Q 024842          103 SHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPY  182 (262)
Q Consensus       103 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~i  182 (262)
                      +|||++++++.+......  ........+++||++.++.+.....    ....+++..++.++.|++.||.|||+++  |
T Consensus        67 ~h~nii~~~~~~~~~~~~--~~~~~~~~~iv~e~~~~~~~~~~~~----~~~~~~~~~~~~i~~qil~~l~~lH~~~--i  138 (318)
T d3blha1          67 KHENVVNLIEICRTKASP--YNRCKGSIYLVFDFCEHDLAGLLSN----VLVKFTLSEIKRVMQMLLNGLYYIHRNK--I  138 (318)
T ss_dssp             CCTTBCCEEEEEEC------------CEEEEEECCCEEHHHHHTC----TTCCCCHHHHHHHHHHHHHHHHHHHHTT--E
T ss_pred             cCCCccceEeeeeccccc--ccccCceEEEEEeccCCCccchhhh----cccccccHHHHHHHHHHHHHHHHhccCC--E
Confidence            999999999887421111  1122456899999988776654332    4566999999999999999999999999  9


Q ss_pred             eecCCCCCcEEEecCCCCCCceEEeeccceeeccccC---------ccCcccCCcccchhhhhhhhhhhhhcCcccchhe
Q 024842          183 AHNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF---------ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQI  253 (262)
Q Consensus       183 vH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~---------~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~  253 (262)
                      +||||||+|||++.++    .+||+|||++.......         ..+++.|.+||.+....    ......|+||+|+
T Consensus       139 vHrDlKp~NILl~~~~----~~kl~dfg~~~~~~~~~~~~~~~~~~~~gT~~Y~aPE~~~~~~----~~~~k~DiwSlGv  210 (318)
T d3blha1         139 LHRDMKAANVLITRDG----VLKLADFGLARAFSLAKNSQPNRYTNRVVTLWYRPPELLLGER----DYGPPIDLWGAGC  210 (318)
T ss_dssp             ECCCCCGGGEEECTTS----CEEECCCTTCEECCC-----CCCCCSCCSCGGGCCHHHHTTCS----SCCTHHHHHHHHH
T ss_pred             EecCcCchheeecCCC----cEEeeecceeeecccccccccccccceecCHHHhhHHHHcCCC----CCCcHHHcccCCc
Confidence            9999999999998776    69999999998654321         24667777777543211    0112357888888


Q ss_pred             eheecccCC
Q 024842          254 LMRELMFGR  262 (262)
Q Consensus       254 ~~~~l~~G~  262 (262)
                      +++||++|+
T Consensus       211 il~el~~g~  219 (318)
T d3blha1         211 IMAEMWTRS  219 (318)
T ss_dssp             HHHHHHHSS
T ss_pred             eeeeHhhCC
Confidence            888887774

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=100.00  E-value=5.4e-36  Score=242.52  Aligned_cols=193  Identities=19%  Similarity=0.242  Sum_probs=148.9

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCCC
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSH  104 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~h  104 (262)
                      +++|++.+.||+|+||.||+|++..+++                      .||+|.......  .+.+.+|++.++.++|
T Consensus         4 g~~Y~i~~~iG~G~fG~Vy~a~~~~~~~----------------------~vAvK~~~~~~~--~~~~~~e~~~~~~l~~   59 (293)
T d1csna_           4 GVHYKVGRRIGEGSFGVIFEGTNLLNNQ----------------------QVAIKFEPRRSD--APQLRDEYRTYKLLAG   59 (293)
T ss_dssp             TTTEEEEEEEEECSSCEEEEEEETTTTE----------------------EEEEEEEECCTT--SCCHHHHHHHHHHTTT
T ss_pred             CCceEEEEEEecCCCeEEEEEEECCCCC----------------------EEEEEEEccccC--cHHHHHHHHHHHHhcC
Confidence            7899999999999999999999987665                      567775543321  2346678888888875


Q ss_pred             -CCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCee
Q 024842          105 -RNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYA  183 (262)
Q Consensus       105 -~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~iv  183 (262)
                       +|++.++.++          ......+++||++ +++|.+++..   ....+++.++..++.|++.||+|||+++  |+
T Consensus        60 ~~~i~~~~~~~----------~~~~~~~~vme~~-~~~l~~~~~~---~~~~~~~~~~~~i~~q~~~~l~~lH~~g--ii  123 (293)
T d1csna_          60 CTGIPNVYYFG----------QEGLHNVLVIDLL-GPSLEDLLDL---CGRKFSVKTVAMAAKQMLARVQSIHEKS--LV  123 (293)
T ss_dssp             CTTCCCEEEEE----------EETTEEEEEEECC-CCBHHHHHHH---TTTCCCHHHHHHHHHHHHHHHHHHHTTT--EE
T ss_pred             CCCCCEEEEEe----------ecCCccEEEEEec-CCCHHHHHHh---hccchhhHHHHHHHHHHHHHHHHHHHCC--ce
Confidence             8888888776          4467789999987 7899887653   3446999999999999999999999999  99


Q ss_pred             ecCCCCCcEEEecCCC-CCCceEEeeccceeecccc------------CccCcccCCcccchhhhhhhhhhhhhcCcccc
Q 024842          184 HNDVKPGNILITCRKG-QPPLAILMDFGSARPAQSK------------FALGQRRYSCRNGLLSIVLHLSELLSCGTVRV  250 (262)
Q Consensus       184 H~dikp~Nill~~~~~-~~~~~kl~Dfg~a~~~~~~------------~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~  250 (262)
                      ||||||+|||++.+.. ....+||+|||+|+.....            ...|++.|++||.+-.-.     .....|+||
T Consensus       124 HrDiKp~Nili~~~~~~~~~~vkl~DFG~a~~~~~~~~~~~~~~~~~~~~~GT~~y~aPE~~~~~~-----~~~~~DiwS  198 (293)
T d1csna_         124 YRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTKQHIPYREKKNLSGTARYMSINTHLGRE-----QSRRDDLEA  198 (293)
T ss_dssp             CCCCCGGGEEECCSSSTTTTCEEECCCTTCEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCC-----CCHHHHHHH
T ss_pred             eccCCccceeecCcccccCCceEEcccceeEEcccCccccceeecccCceEEchhhcCHHHhcCCC-----CChHHHHHH
Confidence            9999999999975422 2336999999999876432            125788999988654322     222357888


Q ss_pred             hheeheecccCC
Q 024842          251 IQILMRELMFGR  262 (262)
Q Consensus       251 ~g~~~~~l~~G~  262 (262)
                      +|+++|||++|+
T Consensus       199 lG~~l~elltg~  210 (293)
T d1csna_         199 LGHVFMYFLRGS  210 (293)
T ss_dssp             HHHHHHHHHHSS
T ss_pred             hhHHHHHHHhCC
Confidence            888888887774

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=3.1e-36  Score=244.82  Aligned_cols=193  Identities=22%  Similarity=0.321  Sum_probs=145.3

Q ss_pred             CCceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCCC
Q 024842           25 ENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSH  104 (262)
Q Consensus        25 ~~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~h  104 (262)
                      +++|++.+.||+|+||.||+|++..+++                      .||+|.......  .+.+..|+++++.++|
T Consensus         6 g~rY~l~~~iG~G~fG~Vy~a~~~~~~~----------------------~vAvK~~~~~~~--~~~~~~E~~i~~~l~~   61 (299)
T d1ckia_           6 GNRYRLGRKIGSGSFGDIYLGTDIAAGE----------------------EVAIKLECVKTK--HPQLHIESKIYKMMQG   61 (299)
T ss_dssp             TTTEEEEEEEEECSSSEEEEEEETTTTE----------------------EEEEEEEESCTT--SCCHHHHHHHHHHSTT
T ss_pred             CCEEEEeEEEeeCCCcEEEEEEECCCCC----------------------EEEEEEEchhcc--CHHHHHHHHHHHHccC
Confidence            5689999999999999999999987665                      566665443322  2346789999999998


Q ss_pred             CCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeee
Q 024842          105 RNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAH  184 (262)
Q Consensus       105 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH  184 (262)
                      ++++..+..+.         ......+++||++ ++++.+.+..   ....+++..+..++.|++.||+|||+++  |+|
T Consensus        62 ~~~i~~~~~~~---------~~~~~~~ivme~~-~~~l~~~~~~---~~~~~~~~~~~~~~~qi~~~l~~lH~~~--iiH  126 (299)
T d1ckia_          62 GVGIPTIRWCG---------AEGDYNVMVMELL-GPSLEDLFNF---CSRKFSLKTVLLLADQMISRIEYIHSKN--FIH  126 (299)
T ss_dssp             STTCCCEEEEE---------EETTEEEEEEECC-CCBHHHHHHH---TTTCCCHHHHHHHHHHHHHHHHHHHHTT--EEC
T ss_pred             CCcccEEEEEE---------ecCCEEEEEEEEc-CCchhhhhhh---ccCCCcHHHHHHHHHHHHHHHHHHHHCC--eee
Confidence            88777665442         3356788899976 5566555432   4456999999999999999999999999  999


Q ss_pred             cCCCCCcEEEecCCCCCCceEEeeccceeecccc------------CccCcccCCcccchhhhhhhhhhhhhcCcccchh
Q 024842          185 NDVKPGNILITCRKGQPPLAILMDFGSARPAQSK------------FALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQ  252 (262)
Q Consensus       185 ~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~------------~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g  252 (262)
                      |||||+|||++..+. ...++|+|||+|..+...            ...+++.|++||.+...++     ....||||+|
T Consensus       127 rDiKp~NIl~~~~~~-~~~vkl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-----~~~~DiwSlG  200 (299)
T d1ckia_         127 RDVKPDNFLMGLGKK-GNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQ-----SRRDDLESLG  200 (299)
T ss_dssp             SCCCGGGEEECCGGG-TTCEEECCCSSCEECBCTTTCCBCCCCBCCSCCCCSSSCCHHHHTTBCC-----CHHHHHHHHH
T ss_pred             ccCCHhhccccccCC-CceeeeeccCcceeccccccccceeccccCCcCCCccccCHHHHhCCCC-----CChhhEEecC
Confidence            999999999965432 226999999999976532            2357888888885543322     2236788888


Q ss_pred             eeheecccCC
Q 024842          253 ILMRELMFGR  262 (262)
Q Consensus       253 ~~~~~l~~G~  262 (262)
                      +++|||++|+
T Consensus       201 ~~l~el~tg~  210 (299)
T d1ckia_         201 YVLMYFNLGS  210 (299)
T ss_dssp             HHHHHHHHSS
T ss_pred             HHHHHHHhCC
Confidence            8888888774

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.7e-35  Score=243.18  Aligned_cols=193  Identities=22%  Similarity=0.343  Sum_probs=140.4

Q ss_pred             CceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhcc--chHHHHHHHHHHHHhhhCC
Q 024842           26 NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQ--NNEQLEMVREEIRVSSLFS  103 (262)
Q Consensus        26 ~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~--~~~~~~~~~~E~~~l~~l~  103 (262)
                      ++|++++.||+|+||+||+|++..+++                      .||+|++...  +....+.+.+|+.+++.++
T Consensus        17 ~~Y~i~~~LG~G~fg~V~~~~d~~t~~----------------------~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~   74 (355)
T d2b1pa1          17 KRYQNLKPIGSGAQGIVCAAYDAVLDR----------------------NVAIKKLSRPFQNQTHAKRAYRELVLMKCVN   74 (355)
T ss_dssp             TTEEEEEECSCC--CEEEEEEETTTTE----------------------EEEEEEEESTTSSHHHHHHHHHHHHHHHHCC
T ss_pred             CCeEEEEEeecCcCeEEEEEEECCCCC----------------------EEEEEEEChhhcCHHHHHHHHHHHHHHHhcC
Confidence            679999999999999999999987765                      6788876543  3444567889999999999


Q ss_pred             CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCee
Q 024842          104 HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYA  183 (262)
Q Consensus       104 h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~iv  183 (262)
                      ||||++++++|..    ....+.....|++|||+.++.+ +.+      ...+++..++.++.|++.||.|||++|  |+
T Consensus        75 hpnIv~~~~~f~~----~~~~~~~~~~~iv~Ey~~~~l~-~~~------~~~~~~~~i~~~~~qil~gl~~LH~~g--ii  141 (355)
T d2b1pa1          75 HKNIISLLNVFTP----QKTLEEFQDVYLVMELMDANLC-QVI------QMELDHERMSYLLYQMLCGIKHLHSAG--II  141 (355)
T ss_dssp             CTTBCCCSEEECS----CCSTTTCCEEEEEEECCSEEHH-HHH------TSCCCHHHHHHHHHHHHHHHHHHHHTT--CC
T ss_pred             CCCeeEEEEEEec----ccccccCceeEEEEeccchHHH-Hhh------hcCCCHHHHHHHHHHHHHHHHHhhhcc--cc
Confidence            9999999998742    1111235789999999876544 333      234899999999999999999999999  99


Q ss_pred             ecCCCCCcEEEecCCCCCCceEEeeccceeeccccC----ccCcccCCcccchhhhhhhhhhhhhcCcccchheeheecc
Q 024842          184 HNDVKPGNILITCRKGQPPLAILMDFGSARPAQSKF----ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMRELM  259 (262)
Q Consensus       184 H~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~~l~  259 (262)
                      ||||||+|||++.++    .++++|||++.......    ..++..|.+||-+....     .....|+||+|+++++|+
T Consensus       142 HrDlKP~Nil~~~~~----~~kl~df~~~~~~~~~~~~~~~~~t~~y~aPE~l~~~~-----~~~~~DiwSlG~~l~ell  212 (355)
T d2b1pa1         142 HRDLKPSNIVVKSDC----TLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMG-----YKENVDIWSVGCIMGEMV  212 (355)
T ss_dssp             CSCCCGGGEEECTTC----CEEECCCCC---------------CCTTCCHHHHTTCC-----CCTTHHHHHHHHHHHHHH
T ss_pred             cccCCcccccccccc----ceeeechhhhhccccccccccccccccccChhhhcCCC-----CCCCcccccccchHHHHh
Confidence            999999999998776    69999999987654322    34666777776553321     122357777777777777


Q ss_pred             cCC
Q 024842          260 FGR  262 (262)
Q Consensus       260 ~G~  262 (262)
                      +|+
T Consensus       213 ~g~  215 (355)
T d2b1pa1         213 RHK  215 (355)
T ss_dssp             HSS
T ss_pred             hCC
Confidence            764

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=2.3e-30  Score=215.37  Aligned_cols=198  Identities=25%  Similarity=0.273  Sum_probs=138.1

Q ss_pred             CceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCC--
Q 024842           26 NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFS--  103 (262)
Q Consensus        26 ~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~--  103 (262)
                      .+|++++.||+|+||.||+|++..+++                      .||+|++.... ...+.+.+|+.+++.++  
T Consensus        13 ~rY~i~~~LG~G~fg~Vy~~~~~~~g~----------------------~vAvKvi~~~~-~~~~~~~~Ei~~l~~l~~~   69 (362)
T d1q8ya_          13 ARYILVRKLGWGHFSTVWLAKDMVNNT----------------------HVAMKIVRGDK-VYTEAAEDEIKLLQRVNDA   69 (362)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTE----------------------EEEEEEECSCH-HHHHHHHHHHHHHHHHHHT
T ss_pred             CcEEEEEEEeeCCCeEEEEEEECCCCC----------------------EEEEEEEeccc-cchHHHHHHHHHHHHhcch
Confidence            469999999999999999999987655                      67888775443 23456778888887775  


Q ss_pred             ---------CCCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHH
Q 024842          104 ---------HRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKH  174 (262)
Q Consensus       104 ---------h~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~  174 (262)
                               |+||+++++++..        ......+.++.++.......... .......+++..++.++.|++.||.|
T Consensus        70 ~~~~~~~~~~~~iv~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~i~~qil~al~~  140 (362)
T d1q8ya_          70 DNTKEDSMGANHILKLLDHFNH--------KGPNGVHVVMVFEVLGENLLALI-KKYEHRGIPLIYVKQISKQLLLGLDY  140 (362)
T ss_dssp             CCSHHHHHHHTTBCCCCEEEEE--------EETTEEEEEEEECCCCEEHHHHH-HHTTTSCCCHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhcCcCceEEEEEEeee--------ccccceeeeeeeccccccccccc-ccccccCCcHHHHHHHHHHHHHHHHH
Confidence                     4677777766521        12234556666655544333222 22244568999999999999999999


Q ss_pred             HHc-CCCCeeecCCCCCcEEEecCCCC--CCceEEeeccceeecccc--CccCcccCCcccchhhhhhhhhhhhhcCccc
Q 024842          175 MHS-LEPPYAHNDVKPGNILITCRKGQ--PPLAILMDFGSARPAQSK--FALGQRRYSCRNGLLSIVLHLSELLSCGTVR  249 (262)
Q Consensus       175 lH~-~~~~ivH~dikp~Nill~~~~~~--~~~~kl~Dfg~a~~~~~~--~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~  249 (262)
                      ||+ .+  |+||||||+|||++.++..  ...++++|||.+......  ...+++.|.+||-.-..+     .....|+|
T Consensus       141 lh~~~~--IvHrDlKp~NIll~~~~~~~~~~~~kl~dfg~s~~~~~~~~~~~gt~~y~aPE~~~~~~-----~~~~~Diw  213 (362)
T d1q8ya_         141 MHRRCG--IIHTDIKPENVLMEIVDSPENLIQIKIADLGNACWYDEHYTNSIQTREYRSPEVLLGAP-----WGCGADIW  213 (362)
T ss_dssp             HHHTTC--EECSCCSGGGEEEEEEETTTTEEEEEECCCTTCEETTBCCCSCCSCGGGCCHHHHHTCC-----CCTHHHHH
T ss_pred             HhhhcC--cccccCChhHeeeeccCcccccceeeEeecccccccccccccccccccccChhhccccC-----CCcccccc
Confidence            997 77  9999999999999866532  124899999999865433  235777777777432221     11234677


Q ss_pred             chheeheecccCC
Q 024842          250 VIQILMRELMFGR  262 (262)
Q Consensus       250 ~~g~~~~~l~~G~  262 (262)
                      |+|+++++|++|+
T Consensus       214 SlG~il~el~~g~  226 (362)
T d1q8ya_         214 STACLIFELITGD  226 (362)
T ss_dssp             HHHHHHHHHHHSS
T ss_pred             chHHHHHHHHHCC
Confidence            7777777777664

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.92  E-value=2.2e-25  Score=168.76  Aligned_cols=151  Identities=13%  Similarity=0.095  Sum_probs=101.6

Q ss_pred             eEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhc---cchHHHHHHHHHHHHhhhCCC
Q 024842           28 YRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLI---QNNEQLEMVREEIRVSSLFSH  104 (262)
Q Consensus        28 y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~---~~~~~~~~~~~E~~~l~~l~h  104 (262)
                      +.++++||+|+||.||+|++. +++.+|+|.      ..++..... ....++...   ...........|...+..+.|
T Consensus         2 ~~vg~~IG~G~~g~Vy~a~~~-~g~~vAvKi------~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~   73 (191)
T d1zara2           2 DAIGKLMGEGKESAVFNCYSE-KFGECVVKF------HKVGHTSFK-KVKEKRDYGDLHFSVLAIRSARNEFRALQKLQG   73 (191)
T ss_dssp             SEEEEEEEECSSEEEEEEEET-TTEEEEEEE------ECC-------CCCC-------CHHHHHHHHHHHHHHHHHHTTT
T ss_pred             chhCCEeeeCcceEEEEEECC-CCCEEEEEE------Eecccchhh-hhhhhhhhccHHHHHHHHHHHHHHHHHHHHccC
Confidence            468999999999999999985 344444441      111100000 000000000   011122345568888999999


Q ss_pred             CCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeee
Q 024842          105 RNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAH  184 (262)
Q Consensus       105 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~~~ivH  184 (262)
                      ++++..+...              ..+++|+++.+..+.+           +++..+..++.|++.+|.|||+++  |+|
T Consensus        74 ~~v~~~~~~~--------------~~~lvme~~~~~~~~~-----------l~~~~~~~i~~ql~~~l~~lH~~g--iiH  126 (191)
T d1zara2          74 LAVPKVYAWE--------------GNAVLMELIDAKELYR-----------VRVENPDEVLDMILEEVAKFYHRG--IVH  126 (191)
T ss_dssp             SSSCCEEEEE--------------TTEEEEECCCCEEGGG-----------CCCSCHHHHHHHHHHHHHHHHHTT--EEC
T ss_pred             CCcceEEEec--------------CCEEEEEeeccccccc-----------hhhHHHHHHHHHHHHHHHHHhhCC--EEE
Confidence            9988776532              2478999988765543           344556788999999999999999  999


Q ss_pred             cCCCCCcEEEecCCCCCCceEEeeccceeecccc
Q 024842          185 NDVKPGNILITCRKGQPPLAILMDFGSARPAQSK  218 (262)
Q Consensus       185 ~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~~  218 (262)
                      |||||+|||++.++     ++|+|||+|.....+
T Consensus       127 rDiKP~NILv~~~~-----~~liDFG~a~~~~~~  155 (191)
T d1zara2         127 GDLSQYNVLVSEEG-----IWIIDFPQSVEVGEE  155 (191)
T ss_dssp             SCCSTTSEEEETTE-----EEECCCTTCEETTST
T ss_pred             ccCChhheeeeCCC-----EEEEECCCcccCCCC
Confidence            99999999998544     899999999876544

>d1j7la_ d.144.1.6 (A:) Type IIIa 3',5"-aminoglycoside phosphotransferase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Type IIIa 3',5"-aminoglycoside phosphotransferase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.52  E-value=7.1e-08  Score=74.65  Aligned_cols=143  Identities=16%  Similarity=0.160  Sum_probs=87.0

Q ss_pred             CceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCC-C
Q 024842           26 NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFS-H  104 (262)
Q Consensus        26 ~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~-h  104 (262)
                      ..|++.+..+.++.+.||+....                        ++.+++|+...........+..|...++.+. +
T Consensus        14 ~~~~~~~~~~G~s~~~v~rv~~~------------------------~~~~vlk~~~~~~~~~~~~~~~E~~~l~~l~~~   69 (263)
T d1j7la_          14 EKYRCVKDTEGMSPAKVYKLVGE------------------------NENLYLKMTDSRYKGTTYDVEREKDMMLWLEGK   69 (263)
T ss_dssp             TTSEEEECSCCCSSSEEEEEECS------------------------SCEEEEEEECGGGTTSTTCHHHHHHHHHHHTTT
T ss_pred             hceEEEEcCCCCCCCcEEEEEeC------------------------CCeEEEEEcCCCcccchhhHHHHHHHHHHHhcc
Confidence            46777776655566789987632                        2356777665444333345667777766553 3


Q ss_pred             CCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCchhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHcCC-----
Q 024842          105 RNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLE-----  179 (262)
Q Consensus       105 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~-----  179 (262)
                      --+.+++.+.          ...+..+++|++..+.++.+...    ..  ..   ...+..++...+..||+..     
T Consensus        70 vpvP~vl~~~----------~~~~~~~lv~~~l~G~~~~~~~~----~~--~~---~~~~~~~l~~~l~~lH~~~~~~~~  130 (263)
T d1j7la_          70 LPVPKVLHFE----------RHDGWSNLLMSEADGVLCSEEYE----DE--QS---PEKIIELYAECIRLFHSIDISDCP  130 (263)
T ss_dssp             SCCCCEEEEE----------EETTEEEEEEECCSSEEHHHHTT----TC--SC---HHHHHHHHHHHHHHHHTSCCTTCS
T ss_pred             CCCCcEEEEE----------ecCCceEEEEEeccccccccccc----cc--cc---HHHHHHHHHHHHHHHhccCccccc
Confidence            2234444432          22466899999999887754321    10  11   2223445555555565420     


Q ss_pred             ----------------------------------------------------CCeeecCCCCCcEEEecCCCCCCceEEe
Q 024842          180 ----------------------------------------------------PPYAHNDVKPGNILITCRKGQPPLAILM  207 (262)
Q Consensus       180 ----------------------------------------------------~~ivH~dikp~Nill~~~~~~~~~~kl~  207 (262)
                                                                          ..++|+|+.|.||+++.++    .+-|+
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~HgD~~~~Nil~~~~~----~~~lI  206 (263)
T d1j7la_         131 YTNSLDSRLAELDYLLNNDLADVDCENWEEDTPFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGK----VSGFI  206 (263)
T ss_dssp             CBCCHHHHHHHHHHHHHTTCSCCCGGGGSTTCSCSSHHHHHHHHHHSCCCCCEEEECSCCCTTSEEEETTE----EEEEC
T ss_pred             cCcchhhhhhhHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHhcCCcCCcEEEEeeccCcceeecCCc----eEEEe
Confidence                                                                1279999999999998654    45699


Q ss_pred             eccceeec
Q 024842          208 DFGSARPA  215 (262)
Q Consensus       208 Dfg~a~~~  215 (262)
                      ||+.+..-
T Consensus       207 Dwe~a~~g  214 (263)
T d1j7la_         207 DLGRSGRA  214 (263)
T ss_dssp             CCTTCEEE
T ss_pred             echhcccC
Confidence            99988653

>d2pula1 d.144.1.6 (A:5-396) Methylthioribose kinase MtnK {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Methylthioribose kinase MtnK
species: Bacillus subtilis [TaxId: 1423]

Probab=98.13  E-value=1.6e-06  Score=70.98  Aligned_cols=32  Identities=19%  Similarity=0.216  Sum_probs=26.6

Q ss_pred             CeeecCCCCCcEEEecCCCCCCceEEeeccceeeccc
Q 024842          181 PYAHNDVKPGNILITCRKGQPPLAILMDFGSARPAQS  217 (262)
Q Consensus       181 ~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~~~  217 (262)
                      .++|||++|.|||++.++     ++|+||..|..-+.
T Consensus       224 ~LiHGDl~~gNIlv~~~~-----~~vID~E~a~~G~~  255 (392)
T d2pula1         224 TLIHGDLHTGSIFASEHE-----TKVIDPEFAFYGPI  255 (392)
T ss_dssp             EEECSCCCGGGEEECSSC-----EEECCCTTCEEECT
T ss_pred             ceeccCCcCCceeEcCCc-----eEEechhhcccCCH
Confidence            389999999999997654     89999999875443

>d1nd4a_ d.144.1.6 (A:) Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase) {Bacteria (Klebsiella pneumoniae) [TaxId: 573]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase)
species: Bacteria (Klebsiella pneumoniae) [TaxId: 573]

Probab=97.62  E-value=8e-05  Score=56.55  Aligned_cols=30  Identities=23%  Similarity=0.327  Sum_probs=25.0

Q ss_pred             eeecCCCCCcEEEecCCCCCCceEEeeccceeec
Q 024842          182 YAHNDVKPGNILITCRKGQPPLAILMDFGSARPA  215 (262)
Q Consensus       182 ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~~  215 (262)
                      ++|+|+.|.|||++.+.    .+-|+||+.+..-
T Consensus       177 liHgD~~~~Nvl~~~~~----~~~iID~~~~~~g  206 (255)
T d1nd4a_         177 VTHGDACLPNIMVENGR----FSGFIDCGRLGVA  206 (255)
T ss_dssp             EECSSCCGGGEEEETTE----EEEECCCTTCEEE
T ss_pred             EEeCCCCCcceEEeCCc----eEEEEEchhcccC
Confidence            79999999999998654    4669999998653

>d1zyla1 d.144.1.6 (A:4-328) RdoA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: RdoA
species: Escherichia coli [TaxId: 562]

Probab=96.59  E-value=0.0019  Score=50.69  Aligned_cols=28  Identities=32%  Similarity=0.496  Sum_probs=22.8

Q ss_pred             CeeecCCCCCcEEEecCCCCCCceEEeeccceee
Q 024842          181 PYAHNDVKPGNILITCRKGQPPLAILMDFGSARP  214 (262)
Q Consensus       181 ~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~  214 (262)
                      .++|+|++|+|||++ ++     ..++||+.|..
T Consensus       193 ~liHgDlh~~NvL~~-~~-----~~~IDFdd~~~  220 (325)
T d1zyla1         193 LRLHGDCHAGNILWR-DG-----PMFVDLDDARN  220 (325)
T ss_dssp             EECCSSCSGGGEEES-SS-----EEECCCTTCCE
T ss_pred             eeecCCCCcccEEEe-CC-----ceEEechhccc
Confidence            489999999999995 33     45899998874

>d1nw1a_ d.144.1.8 (A:) Choline kinase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Choline kinase
domain: Choline kinase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.45  E-value=0.003  Score=50.98  Aligned_cols=85  Identities=12%  Similarity=0.043  Sum_probs=46.8

Q ss_pred             CceEEEEEeecccceEEEEEEecccccccccccccccccCCCCCCCCccceeehhhhccchHHHHHHHHHHHHhhhCC-C
Q 024842           26 NRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFS-H  104 (262)
Q Consensus        26 ~~y~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~E~~~l~~l~-h  104 (262)
                      ++.++ +.|+.|-.-.+|++..........               .....+.++..-....  .....+|..+++.+. +
T Consensus        43 ~~l~v-~~l~GGltN~~y~v~~~~~~~~~~---------------~~~~~vllRi~g~~~~--~idr~~E~~i~~~ls~~  104 (395)
T d1nw1a_          43 EHLRI-SRIKGGMSNMLFLCRLSEVYPPIR---------------NEPNKVLLRVYFNPET--ESHLVAESVIFTLLSER  104 (395)
T ss_dssp             GGEEE-EEECCCTTEEEEEEEECTTSCCSS---------------SCCSEEEEEEECSCCC--HHHHHHHHHHHHHHHHT
T ss_pred             cceEE-EEcCCccccceEEEEeCCCCcccc---------------CCCCcEEEEecCCcch--hhHHHHHHHHHHHHHhC
Confidence            45554 578889999999988654321100               0122355554432222  234456888877774 3


Q ss_pred             CCccchhhhhHHHhhhccCCCCcceeEEEEeecCCCch
Q 024842          105 RNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTL  142 (262)
Q Consensus       105 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~L  142 (262)
                      .-.++++..+            .  -..+++|..+.++
T Consensus       105 gl~Pkll~~~------------~--~g~I~efi~g~~l  128 (395)
T d1nw1a_         105 HLGPKLYGIF------------S--GGRLEEYIPSRPL  128 (395)
T ss_dssp             TSSSCEEEEE------------T--TEEEECCCCEEEC
T ss_pred             CCCCeEEEEc------------C--CceEEEEeccccC
Confidence            3234555544            1  2568888776444

>d2ppqa1 d.144.1.6 (A:5-320) Homoserine kinase ThrB {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Homoserine kinase ThrB
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=95.16  E-value=0.0033  Score=48.96  Aligned_cols=30  Identities=27%  Similarity=0.269  Sum_probs=25.4

Q ss_pred             CeeecCCCCCcEEEecCCCCCCceEEeeccceee
Q 024842          181 PYAHNDVKPGNILITCRKGQPPLAILMDFGSARP  214 (262)
Q Consensus       181 ~ivH~dikp~Nill~~~~~~~~~~kl~Dfg~a~~  214 (262)
                      ++||+|+.++|++++.+.    ..-|+||+.|..
T Consensus       184 giIHgDl~~dNvl~~~~~----v~gvIDF~~~~~  213 (316)
T d2ppqa1         184 GVIHADLFQDNVFFLGDE----LSGLIDFYFACN  213 (316)
T ss_dssp             EEECSCCCGGGEEEETTE----EEEECCCTTCEE
T ss_pred             ccccCCcchhhhhccccc----ceeEeccccccc
Confidence            499999999999998665    457999998873

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.56  E-value=0.021  Score=43.07  Aligned_cols=40  Identities=20%  Similarity=0.172  Sum_probs=30.6

Q ss_pred             ccccCccCcccCCcccchhhhhhhhhhhhhcCcccchhee
Q 024842          215 AQSKFALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQIL  254 (262)
Q Consensus       215 ~~~~~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~  254 (262)
                      +.+|+......|+.+.|+||+|++++|+++.+..|..+..
T Consensus       168 y~aPE~l~~~~~~~k~DVwS~Gvil~el~t~~~~~~~~~~  207 (263)
T d1sm2a_         168 WASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRS  207 (263)
T ss_dssp             SCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSCC
T ss_pred             cCChHHhcCCCCCchhhhcchHHHHHHHHHCCCCCCCCCC
Confidence            3445555566789999999999999999998777765543

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.74  E-value=0.021  Score=42.99  Aligned_cols=42  Identities=12%  Similarity=0.119  Sum_probs=31.9

Q ss_pred             ccccCccCcccCCcccchhhhhhhhhhhhhcCcccchheehe
Q 024842          215 AQSKFALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMR  256 (262)
Q Consensus       215 ~~~~~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~  256 (262)
                      +.+++......|+.+.|+||+|++++|+++.|..|+-+....
T Consensus       167 y~aPE~~~~~~~~~ksDiwS~G~~l~el~t~g~~Pf~~~~~~  208 (258)
T d1k2pa_         167 WSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNS  208 (258)
T ss_dssp             GCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCHH
T ss_pred             cCCcHHhcCCCCCcceeecccchhhHhHHhcCCCCCCCCCHH
Confidence            344555556678999999999999999998777776655433

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.03  E-value=0.032  Score=43.43  Aligned_cols=39  Identities=21%  Similarity=0.129  Sum_probs=30.6

Q ss_pred             ccccCccCcccCCcccchhhhhhhhhhhhhcCcccchhe
Q 024842          215 AQSKFALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQI  253 (262)
Q Consensus       215 ~~~~~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~  253 (262)
                      +-+|+......|+.+.|+||+|++++|+++.|..|+.|.
T Consensus       232 y~aPE~l~~~~~~~~~DiwS~Gvil~emlt~g~~Pf~~~  270 (325)
T d1rjba_         232 WMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGI  270 (325)
T ss_dssp             GCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTC
T ss_pred             cCChHHHcCCCCCcceeccchhHHHHHHHhCCCCCCCCC
Confidence            444555556678999999999999999998777776654

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.83  E-value=0.022  Score=43.54  Aligned_cols=38  Identities=21%  Similarity=0.259  Sum_probs=29.6

Q ss_pred             ccCccCcccCCcccchhhhhhhhhhhhhcCcccchhee
Q 024842          217 SKFALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQIL  254 (262)
Q Consensus       217 ~~~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~  254 (262)
                      +|+......|+.+.|+||+|++++|+++.|..++.+..
T Consensus       180 aPE~~~~~~~~~ksDVwS~Gv~l~E~lt~G~~Pf~~~~  217 (285)
T d1u59a_         180 APECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMK  217 (285)
T ss_dssp             CHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCC
T ss_pred             ChHHHhCCCCCccchhhcchHHHHHHHhCCCCCCCCCC
Confidence            44445556788899999999999999987777766543

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.46  E-value=0.021  Score=43.42  Aligned_cols=39  Identities=13%  Similarity=0.133  Sum_probs=30.2

Q ss_pred             cccCccCcccCCcccchhhhhhhhhhhhhcCcccchhee
Q 024842          216 QSKFALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQIL  254 (262)
Q Consensus       216 ~~~~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~  254 (262)
                      -+|+......|+...|+||+|++++|+++.|..++.+..
T Consensus       177 ~APE~l~~~~~~~~sDiwS~Gv~l~ellt~g~~Pf~~~~  215 (277)
T d1xbba_         177 YAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMK  215 (277)
T ss_dssp             CCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCC
T ss_pred             cCchhhcCCCCCchhhhccchhhhhHHhhCCCCCCCCCC
Confidence            344445556788899999999999999987777776654

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.25  E-value=0.095  Score=40.86  Aligned_cols=38  Identities=11%  Similarity=0.128  Sum_probs=29.7

Q ss_pred             ccccCccCcccCCcccchhhhhhhhhhhhhcCcccchhe
Q 024842          215 AQSKFALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQI  253 (262)
Q Consensus       215 ~~~~~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~  253 (262)
                      +-+++......|+...|+||+|++++++++ |..++.|.
T Consensus       171 Y~aPE~~~~~~y~~~~DiwSlGvilyeml~-G~~pf~~~  208 (337)
T d1o6la_         171 YLAPEVLEDNDYGRAVDWWGLGVVMYEMMC-GRLPFYNQ  208 (337)
T ss_dssp             GCCGGGGSSSCBCTTHHHHHHHHHHHHHHH-SSCSSCCS
T ss_pred             HhhhhhccCCCCChhhcccchhhHHHHHHH-CCCCCCCc
Confidence            445566667788999999999999999998 55555554

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.24  E-value=0.022  Score=43.37  Aligned_cols=40  Identities=13%  Similarity=0.210  Sum_probs=31.4

Q ss_pred             ccccCccCcccCCcccchhhhhhhhhhhhhcCcccchhee
Q 024842          215 AQSKFALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQIL  254 (262)
Q Consensus       215 ~~~~~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~  254 (262)
                      +.+|+......|+.+.|+||+|++++|+++.+..|..+..
T Consensus       179 Y~APE~l~~~~~~~~sDI~S~Gvil~el~t~~~~~~~~~~  218 (283)
T d1mqba_         179 WTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELS  218 (283)
T ss_dssp             GSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCC
T ss_pred             ccCHHHHccCCCCCcccccccHHHHHHHHhCCCCccccCC
Confidence            4455556667888999999999999999997777765543

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.76  E-value=0.027  Score=42.62  Aligned_cols=39  Identities=13%  Similarity=0.253  Sum_probs=29.6

Q ss_pred             cccCccCcccCCcccchhhhhhhhhhhhhcCcccchhee
Q 024842          216 QSKFALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQIL  254 (262)
Q Consensus       216 ~~~~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~  254 (262)
                      .+|+......|+.+.|+||+|++++|+++.+..|..+..
T Consensus       177 ~APE~~~~~~~~~~sDvwS~Gvvl~ellt~~~~~~~~~~  215 (272)
T d1qpca_         177 TAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMT  215 (272)
T ss_dssp             SCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTCC
T ss_pred             cChHHHhCCCCCchhhhhhhHHHHHHHHhCCCCCCCCCC
Confidence            344445556788899999999999999997777665443

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.51  E-value=0.058  Score=41.80  Aligned_cols=36  Identities=25%  Similarity=0.263  Sum_probs=27.2

Q ss_pred             ccccCccCcccCCcccchhhhhhhhhhhhhcCcccch
Q 024842          215 AQSKFALGQRRYSCRNGLLSIVLHLSELLSCGTVRVI  251 (262)
Q Consensus       215 ~~~~~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~  251 (262)
                      +.+|+......|+.+.|+||+||+++|+++ |..++.
T Consensus       169 Y~APEvl~~~~y~~~~DiWSlGvil~ell~-G~~Pf~  204 (322)
T d1s9ja_         169 YMSPERLQGTHYSVQSDIWSMGLSLVEMAV-GRYPIP  204 (322)
T ss_dssp             CCCHHHHHCSCCCTTHHHHHHHHHHHHHHH-SSCCSS
T ss_pred             ccCchHHcCCCCCcHHHHHHHHHHHHHHHH-CCCCCC
Confidence            344555555679999999999999999998 444443

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=87.05  E-value=0.041  Score=42.19  Aligned_cols=40  Identities=15%  Similarity=0.116  Sum_probs=30.4

Q ss_pred             ccccCccCcccCCcccchhhhhhhhhhhhhcCcccchhee
Q 024842          215 AQSKFALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQIL  254 (262)
Q Consensus       215 ~~~~~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~  254 (262)
                      +.+++......|+.+.|+||+|++++|+++.+..|+.+..
T Consensus       208 y~aPE~~~~~~~t~ksDVwS~Gvvl~ell~~~~~p~~~~~  247 (301)
T d1lufa_         208 WMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYGMA  247 (301)
T ss_dssp             GCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSC
T ss_pred             cCCHHHHccCCCChhhhhccchhhHHHHHccCCCCCCCCC
Confidence            4455555667789999999999999999987666665543

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.94  E-value=0.048  Score=41.71  Aligned_cols=39  Identities=18%  Similarity=0.163  Sum_probs=30.0

Q ss_pred             ccccCccCcccCCcccchhhhhhhhhhhhhcCcccchhe
Q 024842          215 AQSKFALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQI  253 (262)
Q Consensus       215 ~~~~~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~  253 (262)
                      +.+|+......|+.+.|+||+|++++|+++.+..|+.+.
T Consensus       202 y~APE~l~~~~~~~~sDiwS~Gvil~ellt~~~~p~~~~  240 (299)
T d1ywna1         202 WMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGV  240 (299)
T ss_dssp             GCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTC
T ss_pred             ccchhHhhcCCCCcccceeehHHHHHHHHhCCCCCCCCC
Confidence            444555556678999999999999999998766666554

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.65  E-value=0.089  Score=39.44  Aligned_cols=37  Identities=14%  Similarity=-0.051  Sum_probs=27.5

Q ss_pred             ccccCccCcccCCcccchhhhhhhhhhhhhcCcccchh
Q 024842          215 AQSKFALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQ  252 (262)
Q Consensus       215 ~~~~~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g  252 (262)
                      +.+|+......|+.+.|+||+|++++++++. ..++.+
T Consensus       170 Y~APE~~~~~~~~~~~DiwSlGvilyell~G-~~Pf~~  206 (263)
T d2j4za1         170 YLPPEMIEGRMHDEKVDLWSLGVLCYEFLVG-KPPFEA  206 (263)
T ss_dssp             GCCHHHHTTCCCCTTHHHHHHHHHHHHHHHS-SCTTCC
T ss_pred             ccCHHHHcCCCCCchhhhhhHhHHHHHHhcC-CCCCCC
Confidence            4445555566788999999999999999984 444444

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.01  E-value=0.078  Score=39.90  Aligned_cols=37  Identities=16%  Similarity=0.099  Sum_probs=27.6

Q ss_pred             ccccCccCcccCCcccchhhhhhhhhhhhhcCcccchh
Q 024842          215 AQSKFALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQ  252 (262)
Q Consensus       215 ~~~~~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g  252 (262)
                      +.+|+......|+.+.|+||+|++++++++. ..++.+
T Consensus       180 Y~APE~l~~~~~~~~~DIwSlGvilyel~tg-~~Pf~~  216 (269)
T d2java1         180 YMSPEQMNRMSYNEKSDIWSLGCLLYELCAL-MPPFTA  216 (269)
T ss_dssp             CCCHHHHTTCCCCHHHHHHHHHHHHHHHHHS-SCSCCC
T ss_pred             cCCHHHHcCCCCChHHHHHhhCHHHHHHhhC-CCCCCC
Confidence            4455556667789999999999999999985 444333

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.75  E-value=0.036  Score=41.92  Aligned_cols=39  Identities=18%  Similarity=0.164  Sum_probs=29.9

Q ss_pred             cccCccCcccCCcccchhhhhhhhhhhhhcCcccchhee
Q 024842          216 QSKFALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQIL  254 (262)
Q Consensus       216 ~~~~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~  254 (262)
                      .+++......|+...|+||+|++++|+++.|..++.+..
T Consensus       181 ~aPE~~~~~~~~~~~Di~S~Gvil~emlt~G~~Pf~~~~  219 (273)
T d1u46a_         181 CAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLN  219 (273)
T ss_dssp             CCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTCC
T ss_pred             CCHHHHhCCCCCcchhhhhhHHHHHHHHhCCCCCCCCcC
Confidence            345555566788889999999999999987777665543

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.67  E-value=0.14  Score=39.87  Aligned_cols=36  Identities=19%  Similarity=0.220  Sum_probs=27.7

Q ss_pred             cccCccCcccCCcccchhhhhhhhhhhhhcCcccchh
Q 024842          216 QSKFALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQ  252 (262)
Q Consensus       216 ~~~~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g  252 (262)
                      .+|+......|+.+.|+||+|++++++++ |..++.|
T Consensus       180 ~aPE~~~~~~y~~~~DiwSlGvily~llt-g~~Pf~~  215 (335)
T d2ozaa1         180 VAPEVLGPEKYDKSCDMWSLGVIMYILLC-GYPPFYS  215 (335)
T ss_dssp             CCCCCCCGGGGSHHHHHHHHHHHHHHHTT-SSCSCEE
T ss_pred             CCcHHHcCCCCCHHHHHHhhchhHHHHhh-CCCCCCC
Confidence            35556667789999999999999999998 4544443

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.54  E-value=0.039  Score=42.52  Aligned_cols=41  Identities=17%  Similarity=0.105  Sum_probs=31.0

Q ss_pred             ccccCccCcccCCcccchhhhhhhhhhhhhcCcccchheeh
Q 024842          215 AQSKFALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILM  255 (262)
Q Consensus       215 ~~~~~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~  255 (262)
                      +.+++......|+...|+||+|++++|+++.+..|+-+...
T Consensus       192 y~aPE~l~~~~~~~~sDvwSfGvil~ell~~~~~p~~~~~~  232 (309)
T d1fvra_         192 WMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTC  232 (309)
T ss_dssp             TCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCH
T ss_pred             ccchHHhccCCCCccceeehhHHHHHHHHhcCCCCCCCCCH
Confidence            34444555667888999999999999999877777665543

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.51  E-value=0.046  Score=41.93  Aligned_cols=39  Identities=15%  Similarity=0.204  Sum_probs=30.8

Q ss_pred             ccCccCcccCCcccchhhhhhhhhhhhhcCcccchheeh
Q 024842          217 SKFALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILM  255 (262)
Q Consensus       217 ~~~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~  255 (262)
                      +++......|+...|+||+|++++|+++.|..|+.+...
T Consensus       201 aPE~~~~~~~~~~sDvwS~Gvvl~el~t~g~~Pf~~~~~  239 (299)
T d1jpaa_         201 APEAIQYRKFTSASDVWSYGIVMWEVMSYGERPYWDMTN  239 (299)
T ss_dssp             CHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCH
T ss_pred             CHHHHhcCCCCcccccccchHHHHHHHhCCCCCCCCCCH
Confidence            444455567888999999999999999988888766543

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.45  E-value=0.054  Score=41.23  Aligned_cols=38  Identities=16%  Similarity=0.173  Sum_probs=29.7

Q ss_pred             ccCccCcccCCcccchhhhhhhhhhhhhcCcccchhee
Q 024842          217 SKFALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQIL  254 (262)
Q Consensus       217 ~~~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~  254 (262)
                      .++......|+.+.|+||+|++++|+++.+..|..+..
T Consensus       184 aPE~~~~~~~~~k~DiwS~Gv~l~ell~~~~p~~~~~~  221 (287)
T d1opja_         184 APESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGID  221 (287)
T ss_dssp             CHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCSSTTCC
T ss_pred             ChHHHcCCCCCchhhhhhHHHHHHHHHhCCCCCCCcch
Confidence            45555566789999999999999999987777665543

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=85.19  E-value=0.1  Score=41.16  Aligned_cols=29  Identities=17%  Similarity=0.094  Sum_probs=23.2

Q ss_pred             cCcccCCcccchhhhhhhhhhhhhcCcccc
Q 024842          221 LGQRRYSCRNGLLSIVLHLSELLSCGTVRV  250 (262)
Q Consensus       221 ~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~  250 (262)
                      .....|+.+.|+||+|++++++++. ..++
T Consensus       178 ~~~~~~~~~~DiwSlGvilyemltG-~~Pf  206 (364)
T d1omwa3         178 QKGVAYDSSADWFSLGCMLFKLLRG-HSPF  206 (364)
T ss_dssp             STTCCCCTHHHHHHHHHHHHHHHHS-SCSS
T ss_pred             hcCCCCCcccchhHHHHHHHHHHhC-CCCC
Confidence            3456788899999999999999984 4443

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.78  E-value=0.11  Score=39.61  Aligned_cols=35  Identities=17%  Similarity=0.099  Sum_probs=26.8

Q ss_pred             ccccCccCcccCCcccchhhhhhhhhhhhhcCcccc
Q 024842          215 AQSKFALGQRRYSCRNGLLSIVLHLSELLSCGTVRV  250 (262)
Q Consensus       215 ~~~~~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~  250 (262)
                      +.+|+......|+.+.|+||+|++++|+++. ..++
T Consensus       181 Y~APE~~~~~~y~~~~DiwSlG~il~ell~g-~~pf  215 (305)
T d1blxa_         181 YRAPEVLLQSSYATPVDLWSVGCIFAEMFRR-KPLF  215 (305)
T ss_dssp             TCCHHHHTTCCCCTHHHHHHHHHHHHHHHHS-SCSC
T ss_pred             hcCcchhcCCCCChhehhhchHHHHHHHHHC-CCCC
Confidence            3445555667789999999999999999984 4443

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.20  E-value=0.12  Score=39.28  Aligned_cols=36  Identities=8%  Similarity=0.141  Sum_probs=27.1

Q ss_pred             cccCccCcccCCcccchhhhhhhhhhhhhcCcccchh
Q 024842          216 QSKFALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQ  252 (262)
Q Consensus       216 ~~~~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g  252 (262)
                      .+|+......|+.+.|+||+|++++++++. ..++.+
T Consensus       183 ~aPE~~~~~~~~~~~DiwSlGvilyemltG-~~Pf~~  218 (293)
T d1yhwa1         183 MAPEVVTRKAYGPKVDIWSLGIMAIEMIEG-EPPYLN  218 (293)
T ss_dssp             CCHHHHSSSCBCTHHHHHHHHHHHHHHHHS-SCTTTT
T ss_pred             cChhhhcCCCCCchhceehHhHHHHHHhhC-CCCCCC
Confidence            344555566788999999999999999984 444444

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.17  E-value=0.057  Score=40.69  Aligned_cols=42  Identities=12%  Similarity=0.126  Sum_probs=32.3

Q ss_pred             ccccCccCcccCCcccchhhhhhhhhhhhhcCcccchheehe
Q 024842          215 AQSKFALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILMR  256 (262)
Q Consensus       215 ~~~~~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~~  256 (262)
                      +.+++......|+.+.|+||+|++++|+++.|..|+.+....
T Consensus       175 y~apE~l~~~~~~~~~DiwSlGvil~e~lt~g~~P~~~~~~~  216 (273)
T d1mp8a_         175 WMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNN  216 (273)
T ss_dssp             GCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCCGG
T ss_pred             cchhhHhccCCCCCccccccchHHHHHHHhcCCCCCCCCCHH
Confidence            344455556678889999999999999998888887665443

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.09  E-value=0.054  Score=41.48  Aligned_cols=40  Identities=20%  Similarity=0.183  Sum_probs=30.9

Q ss_pred             cccCccCcccCCcccchhhhhhhhhhhhhcCcccchheeh
Q 024842          216 QSKFALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILM  255 (262)
Q Consensus       216 ~~~~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~  255 (262)
                      .+++......|+.+.|+||+|++++|+++.|..|+-+...
T Consensus       204 ~aPE~l~~~~y~~k~DiwS~Gvvl~ell~~g~~p~~~~~~  243 (299)
T d1fgka_         204 MAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPV  243 (299)
T ss_dssp             SCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCH
T ss_pred             hhhhHhcCCCCCchhhhHHhHHHHHHhccCCCCCCCCCCH
Confidence            3444455668899999999999999999888877665543

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.85  E-value=0.06  Score=40.41  Aligned_cols=39  Identities=26%  Similarity=0.353  Sum_probs=30.4

Q ss_pred             ccCccCcccCCcccchhhhhhhhhhhhhcCcccchheeh
Q 024842          217 SKFALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQILM  255 (262)
Q Consensus       217 ~~~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~~~  255 (262)
                      +|+...+..|+...|+||+|++++|+++.+..|+.+...
T Consensus       168 aPE~l~~~~~t~~sDIwSfG~il~el~t~~~~p~~~~~~  206 (262)
T d1byga_         168 APEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPL  206 (262)
T ss_dssp             CHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCG
T ss_pred             ChHHHhCCCCChHHHHHhHHHHHHHHHHCCCCCCCCCCH
Confidence            344444567888999999999999999988887766543

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=83.78  E-value=0.13  Score=39.44  Aligned_cols=36  Identities=25%  Similarity=0.128  Sum_probs=27.1

Q ss_pred             cccCccCcccCCcccchhhhhhhhhhhhhcCcccchh
Q 024842          216 QSKFALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQ  252 (262)
Q Consensus       216 ~~~~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g  252 (262)
                      .+|+......|+.+.|+||+|++++++++ |..++.+
T Consensus       176 ~APE~~~~~~~~~~~DiwSlGvilyell~-g~~Pf~~  211 (307)
T d1a06a_         176 VAPEVLAQKPYSKAVDCWSIGVIAYILLC-GYPPFYD  211 (307)
T ss_dssp             SCHHHHTTCCCCTHHHHHHHHHHHHHHHH-SSCSCCC
T ss_pred             cCcHHHcCCCCCcHHHhhhhhHHHHHHHh-CCCCCCC
Confidence            34455556678999999999999999998 4554443

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.76  E-value=0.18  Score=38.18  Aligned_cols=31  Identities=16%  Similarity=0.251  Sum_probs=23.9

Q ss_pred             CcccCCcccchhhhhhhhhhhhhcCcccchhe
Q 024842          222 GQRRYSCRNGLLSIVLHLSELLSCGTVRVIQI  253 (262)
Q Consensus       222 ~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~  253 (262)
                      ....|+.+.|+||+|++++++++. ..++.+.
T Consensus       188 ~~~~y~~k~DiwSlGvilyemltg-~~Pf~~~  218 (288)
T d2jfla1         188 KDRPYDYKADVWSLGITLIEMAEI-EPPHHEL  218 (288)
T ss_dssp             TTSSTTTHHHHHHHHHHHHHHHHS-SCTTTTS
T ss_pred             CCCCCChhhhHHHHHHHHHHHhhC-CCCCCCC
Confidence            345688899999999999999984 4454443

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.59  E-value=0.13  Score=39.63  Aligned_cols=38  Identities=18%  Similarity=0.076  Sum_probs=28.4

Q ss_pred             ccccCccCcccCCcccchhhhhhhhhhhhhcCcccchhe
Q 024842          215 AQSKFALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQI  253 (262)
Q Consensus       215 ~~~~~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~  253 (262)
                      +.+++......|+.+.|+||+|++++++++ |..++.|.
T Consensus       169 y~aPE~~~~~~~~~~~DiwSlGvilyemlt-G~~PF~~~  206 (320)
T d1xjda_         169 YIAPEILLGQKYNHSVDWWSFGVLLYEMLI-GQSPFHGQ  206 (320)
T ss_dssp             GCCHHHHTTCCBCTHHHHHHHHHHHHHHHH-SSCSSCCS
T ss_pred             cCCHHHHcCCCCCchhhhhhhhHHHHHHHh-CCCCCCCC
Confidence            334455566678999999999999999998 55555443

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.78  E-value=0.11  Score=39.45  Aligned_cols=37  Identities=11%  Similarity=-0.024  Sum_probs=27.1

Q ss_pred             ccccCccCcccCCcccchhhhhhhhhhhhhcCcccchh
Q 024842          215 AQSKFALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQ  252 (262)
Q Consensus       215 ~~~~~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g  252 (262)
                      +.+++......|+...|+||+|++++++++. ..++.+
T Consensus       176 Y~APE~~~~~~~~~~~DiwSlGvilyell~g-~~Pf~~  212 (288)
T d1uu3a_         176 YVSPELLTEKSACKSSDLWALGCIIYQLVAG-LPPFRA  212 (288)
T ss_dssp             GCCHHHHHTCCCCHHHHHHHHHHHHHHHHHS-SCSSCC
T ss_pred             ccCceeeccCCCCcccceehhhHHHHHHhhC-CCCCCC
Confidence            3445555566788899999999999999984 444433

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.35  E-value=0.25  Score=37.04  Aligned_cols=23  Identities=9%  Similarity=0.184  Sum_probs=20.1

Q ss_pred             cCCcccchhhhhhhhhhhhhcCc
Q 024842          225 RYSCRNGLLSIVLHLSELLSCGT  247 (262)
Q Consensus       225 ~~~~~~d~~s~g~~~~e~~~~~~  247 (262)
                      .|+.+.|+||+|++++++++...
T Consensus       188 ~~~~~~DIwSlGvilyel~~g~~  210 (270)
T d1t4ha_         188 KYDESVDVYAFGMCMLEMATSEY  210 (270)
T ss_dssp             CCCTHHHHHHHHHHHHHHHHSSC
T ss_pred             CCCCcCchhhHHHHHHHHHHCCC
Confidence            58899999999999999998543

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.04  E-value=0.17  Score=38.41  Aligned_cols=36  Identities=14%  Similarity=0.011  Sum_probs=26.9

Q ss_pred             cccCccCcccCCcccchhhhhhhhhhhhhcCcccchh
Q 024842          216 QSKFALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQ  252 (262)
Q Consensus       216 ~~~~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g  252 (262)
                      .+|+......|+.+.|+||+|++++++++. ..++.|
T Consensus       183 ~APE~~~~~~~~~~~DiwSlGvilyell~g-~~Pf~~  218 (293)
T d1jksa_         183 VAPEIVNYEPLGLEADMWSIGVITYILLSG-ASPFLG  218 (293)
T ss_dssp             CCHHHHTTCCBCTHHHHHHHHHHHHHHHHS-SCSSCC
T ss_pred             cCHHHHcCCCCCCcccchhhhHHHHHHHcC-CCCCCC
Confidence            344455566788999999999999999985 444444

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.04  E-value=0.18  Score=38.82  Aligned_cols=37  Identities=14%  Similarity=0.145  Sum_probs=27.7

Q ss_pred             cccCccCcccCCcccchhhhhhhhhhhhhcCcccchhe
Q 024842          216 QSKFALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQI  253 (262)
Q Consensus       216 ~~~~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~  253 (262)
                      .+|+......|+.+.|+||+|++++++++ |..++.+.
T Consensus       168 ~APE~l~~~~y~~~~DiwSlGvilyemlt-G~~Pf~~~  204 (316)
T d1fota_         168 IAPEVVSTKPYNKSIDWWSFGILIYEMLA-GYTPFYDS  204 (316)
T ss_dssp             CCHHHHTTCCBCTTHHHHHHHHHHHHHHH-SSCTTCCS
T ss_pred             cCHHHHcCCCCCchhhccccchhHHHHHh-CCCCCCCc
Confidence            34445566678899999999999999998 45555443

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.63  E-value=0.14  Score=38.86  Aligned_cols=31  Identities=23%  Similarity=0.230  Sum_probs=24.2

Q ss_pred             ccCcccCCcccchhhhhhhhhhhhhcCcccch
Q 024842          220 ALGQRRYSCRNGLLSIVLHLSELLSCGTVRVI  251 (262)
Q Consensus       220 ~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~  251 (262)
                      ......|+...|+||+|++++++++. ..++.
T Consensus       172 ~~~~~~~~~~~DiwSlGvil~el~~g-~~pf~  202 (299)
T d1ua2a_         172 LFGARMYGVGVDMWAVGCILAELLLR-VPFLP  202 (299)
T ss_dssp             HTTCSCCCHHHHHHHHHHHHHHHHHS-SCSSC
T ss_pred             HccCCCCChhhhhhhcchHHHHHHhC-cCCCC
Confidence            34566788999999999999999984 44443

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.61  E-value=0.17  Score=39.48  Aligned_cols=31  Identities=23%  Similarity=0.266  Sum_probs=24.7

Q ss_pred             ccCccCcccCCcccchhhhhhhhhhhhhcCc
Q 024842          217 SKFALGQRRYSCRNGLLSIVLHLSELLSCGT  247 (262)
Q Consensus       217 ~~~~~~~~~~~~~~d~~s~g~~~~e~~~~~~  247 (262)
                      ++...+...|+.+.|+||+|++++|+++...
T Consensus       191 PE~~~~~~~~~~~~DIwSlG~il~el~~g~~  221 (350)
T d1q5ka_         191 PELIFGATDYTSSIDVWSAGCVLAELLLGQP  221 (350)
T ss_dssp             HHHHTTCSSCCTHHHHHHHHHHHHHHHHTSC
T ss_pred             hHHhhcccCCCcceeecccceEEEehhhCCC
Confidence            3334566788999999999999999998543

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.43  E-value=0.12  Score=39.72  Aligned_cols=39  Identities=18%  Similarity=0.122  Sum_probs=30.2

Q ss_pred             ccccCccCcccCCcccchhhhhhhhhhhhhcCcccchhe
Q 024842          215 AQSKFALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQI  253 (262)
Q Consensus       215 ~~~~~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~  253 (262)
                      +-+++......++...|+||+|++++|+++.+..|+.+.
T Consensus       213 y~aPE~~~~~~~~~~~DIwS~G~~l~ellt~g~p~~~~~  251 (311)
T d1t46a_         213 WMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGM  251 (311)
T ss_dssp             GCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTC
T ss_pred             HcCHHHhcCCCCCCcccccchHHHHHHHHhCCCCCCCCC
Confidence            334444555678889999999999999998877776554

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.28  E-value=0.12  Score=39.75  Aligned_cols=39  Identities=15%  Similarity=0.213  Sum_probs=28.6

Q ss_pred             ccccCccCcccCCcccchhhhhhhhhhhhhcCcccchhe
Q 024842          215 AQSKFALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQI  253 (262)
Q Consensus       215 ~~~~~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g~  253 (262)
                      +.+++...+..++...|+||+|++++|+++.+..|..+.
T Consensus       200 y~aPE~~~~~~~~~ksDI~SfGivl~El~t~~~p~~~~~  238 (311)
T d1r0pa_         200 WMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDV  238 (311)
T ss_dssp             GSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCC--
T ss_pred             ccChHHHhcCCCCChhHhhhhHHHHHHHHHCCCCCCCCC
Confidence            334445556678889999999999999998777665443

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.05  E-value=0.14  Score=38.58  Aligned_cols=33  Identities=15%  Similarity=0.038  Sum_probs=22.8

Q ss_pred             cccCccCccc-CCcccchhhhhhhhhhhhhcCcc
Q 024842          216 QSKFALGQRR-YSCRNGLLSIVLHLSELLSCGTV  248 (262)
Q Consensus       216 ~~~~~~~~~~-~~~~~d~~s~g~~~~e~~~~~~v  248 (262)
                      .+|+...... ++.+.|+||+|++++++++....
T Consensus       172 ~APE~~~~~~~~~~~~DiwSlGvilyeml~G~~p  205 (271)
T d1nvra_         172 VAPELLKRREFHAEPVDVWSCGIVLTAMLAGELP  205 (271)
T ss_dssp             SCTHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCS
T ss_pred             cCHhHhcCCCCCCCceeeeHhHHHHHHHHhCCCC
Confidence            3444443444 46678999999999999984333

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.05  E-value=0.19  Score=39.28  Aligned_cols=36  Identities=6%  Similarity=-0.013  Sum_probs=26.9

Q ss_pred             cccCccCcccCCcccchhhhhhhhhhhhhcCcccchh
Q 024842          216 QSKFALGQRRYSCRNGLLSIVLHLSELLSCGTVRVIQ  252 (262)
Q Consensus       216 ~~~~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~g  252 (262)
                      .+|+......|+.+.|+||+|++++++++. ..++.|
T Consensus       205 ~APE~~~~~~~~~~~DiwSlGvilyemltG-~~Pf~~  240 (350)
T d1rdqe_         205 LAPEIILSKGYNKAVDWWALGVLIYEMAAG-YPPFFA  240 (350)
T ss_dssp             CCHHHHTTCCBCTHHHHHHHHHHHHHHHHS-SCSSCC
T ss_pred             CCHHHHcCCCCCccccccchhHHHHHHHhC-CCCCCC
Confidence            344455566788899999999999999984 444444

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=80.77  E-value=0.17  Score=37.98  Aligned_cols=36  Identities=17%  Similarity=0.033  Sum_probs=26.4

Q ss_pred             ccccCccCcccCCcccchhhhhhhhhhhhhcCcccch
Q 024842          215 AQSKFALGQRRYSCRNGLLSIVLHLSELLSCGTVRVI  251 (262)
Q Consensus       215 ~~~~~~~~~~~~~~~~d~~s~g~~~~e~~~~~~v~~~  251 (262)
                      +.+|+......|+.+.|+||+|++++++++. ..++.
T Consensus       180 Y~aPE~~~~~~~~~~~DiwSlGvilyelltG-~~Pf~  215 (277)
T d1o6ya_         180 YLSPEQARGDSVDARSDVYSLGCVLYEVLTG-EPPFT  215 (277)
T ss_dssp             TCCHHHHTTCCCCHHHHHHHHHHHHHHHHHS-SCSCC
T ss_pred             ccCHHHHcCCCCCcceecccchHHHHHHHhC-CCCCC
Confidence            3344445556788899999999999999984 44433