BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 024843
         (261 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2ISJ|A Chain A, Blub Bound To Oxidized Fmn
 pdb|2ISJ|B Chain B, Blub Bound To Oxidized Fmn
 pdb|2ISJ|C Chain C, Blub Bound To Oxidized Fmn
 pdb|2ISJ|D Chain D, Blub Bound To Oxidized Fmn
 pdb|2ISJ|E Chain E, Blub Bound To Oxidized Fmn
 pdb|2ISJ|F Chain F, Blub Bound To Oxidized Fmn
 pdb|2ISJ|G Chain G, Blub Bound To Oxidized Fmn
 pdb|2ISJ|H Chain H, Blub Bound To Oxidized Fmn
 pdb|2ISK|A Chain A, Blub Bound To Flavin Anion (Charge Transfer Complex)
 pdb|2ISK|B Chain B, Blub Bound To Flavin Anion (Charge Transfer Complex)
 pdb|2ISK|C Chain C, Blub Bound To Flavin Anion (Charge Transfer Complex)
 pdb|2ISK|D Chain D, Blub Bound To Flavin Anion (Charge Transfer Complex)
 pdb|2ISK|E Chain E, Blub Bound To Flavin Anion (Charge Transfer Complex)
 pdb|2ISK|F Chain F, Blub Bound To Flavin Anion (Charge Transfer Complex)
 pdb|2ISK|G Chain G, Blub Bound To Flavin Anion (Charge Transfer Complex)
 pdb|2ISK|H Chain H, Blub Bound To Flavin Anion (Charge Transfer Complex)
 pdb|2ISL|A Chain A, Blub Bound To Reduced Flavin (Fmnh2) And Molecular Oxygen.
           (Clear Crystal Form)
 pdb|2ISL|B Chain B, Blub Bound To Reduced Flavin (Fmnh2) And Molecular Oxygen.
           (Clear Crystal Form)
 pdb|2ISL|C Chain C, Blub Bound To Reduced Flavin (Fmnh2) And Molecular Oxygen.
           (Clear Crystal Form)
 pdb|2ISL|D Chain D, Blub Bound To Reduced Flavin (Fmnh2) And Molecular Oxygen.
           (Clear Crystal Form)
 pdb|2ISL|E Chain E, Blub Bound To Reduced Flavin (Fmnh2) And Molecular Oxygen.
           (Clear Crystal Form)
 pdb|2ISL|F Chain F, Blub Bound To Reduced Flavin (Fmnh2) And Molecular Oxygen.
           (Clear Crystal Form)
 pdb|2ISL|G Chain G, Blub Bound To Reduced Flavin (Fmnh2) And Molecular Oxygen.
           (Clear Crystal Form)
 pdb|2ISL|H Chain H, Blub Bound To Reduced Flavin (Fmnh2) And Molecular Oxygen.
           (Clear Crystal Form)
          Length = 230

 Score = 27.7 bits (60), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 12/74 (16%)

Query: 60  SMWLAGMIFGYGLGFVIIMVGTTIGMVLP--------YWVGLLFRDRIHQW----LKRWP 107
           ++WLA    G G+G+V I   + I  +L          W+ L F DR++Q      K W 
Sbjct: 154 NLWLAARAEGVGVGWVSIFHESEIKAILGIPDHVEIVAWLCLGFVDRLYQEPELAAKGWR 213

Query: 108 QQAAMLRLAAEGSW 121
           Q+  +  L  E  W
Sbjct: 214 QRLPLEDLVFEEGW 227


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.328    0.141    0.453 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,315,126
Number of Sequences: 62578
Number of extensions: 266625
Number of successful extensions: 593
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 593
Number of HSP's gapped (non-prelim): 2
length of query: 261
length of database: 14,973,337
effective HSP length: 97
effective length of query: 164
effective length of database: 8,903,271
effective search space: 1460136444
effective search space used: 1460136444
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 50 (23.9 bits)