Query 024843
Match_columns 261
No_of_seqs 209 out of 1908
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 07:49:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024843.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024843hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0398 Uncharacterized conser 100.0 6.7E-28 1.5E-32 210.1 23.2 153 19-176 31-185 (223)
2 COG0586 DedA Uncharacterized m 99.9 1.8E-20 3.8E-25 162.1 20.6 155 24-182 4-169 (208)
3 PF09335 SNARE_assoc: SNARE as 99.8 2.2E-20 4.7E-25 147.3 13.9 120 55-175 1-122 (123)
4 PRK10847 hypothetical protein; 99.8 1.2E-19 2.7E-24 158.1 18.8 150 26-180 18-181 (219)
5 COG1238 Predicted membrane pro 99.6 2.1E-14 4.5E-19 119.0 15.1 150 24-178 7-157 (161)
6 KOG3140 Predicted membrane pro 99.5 8.2E-14 1.8E-18 124.4 11.7 145 37-184 94-241 (275)
7 PF06695 Sm_multidrug_ex: Puta 95.1 0.45 9.8E-06 37.6 10.8 95 69-167 15-119 (121)
8 PF01102 Glycophorin_A: Glycop 93.7 0.091 2E-06 41.7 4.0 56 195-253 66-122 (122)
9 TIGR02359 thiW thiW protein. L 89.6 10 0.00023 31.5 11.9 33 56-88 33-65 (160)
10 PRK01844 hypothetical protein; 86.0 2.2 4.9E-05 30.6 5.0 33 71-107 4-37 (72)
11 PRK00523 hypothetical protein; 81.3 4.6 9.9E-05 29.0 5.0 26 72-97 6-32 (72)
12 PF00558 Vpu: Vpu protein; In 79.0 3.5 7.6E-05 30.3 3.9 19 227-245 48-67 (81)
13 COG2059 ChrA Chromate transpor 78.7 41 0.00089 28.9 11.0 88 126-220 50-138 (195)
14 PRK12821 aspartyl/glutamyl-tRN 75.9 81 0.0017 30.7 13.2 26 59-84 100-125 (477)
15 PF09835 DUF2062: Uncharacteri 74.9 43 0.00093 27.0 13.9 98 130-228 31-151 (154)
16 PF11669 WBP-1: WW domain-bind 72.0 20 0.00042 27.5 6.7 37 198-234 24-60 (102)
17 PF04246 RseC_MucC: Positive r 71.4 8.6 0.00019 30.6 4.8 39 59-97 79-119 (135)
18 PF03672 UPF0154: Uncharacteri 71.2 7.1 0.00015 27.4 3.7 22 76-97 2-24 (64)
19 PRK11677 hypothetical protein; 69.7 11 0.00024 30.4 5.0 23 74-96 3-25 (134)
20 PRK10527 hypothetical protein; 67.7 31 0.00067 27.5 7.2 38 47-110 20-57 (125)
21 PF03773 DUF318: Predicted per 67.0 1E+02 0.0022 28.0 15.2 43 125-167 53-96 (307)
22 PF12273 RCR: Chitin synthesis 66.5 4.5 9.8E-05 32.1 2.2 20 203-222 10-29 (130)
23 PF07155 ECF-ribofla_trS: ECF- 66.2 9.4 0.0002 31.3 4.2 33 56-88 37-69 (169)
24 COG3763 Uncharacterized protei 65.9 18 0.00039 25.8 4.8 33 71-107 4-37 (71)
25 PF07172 GRP: Glycine rich pro 65.4 17 0.00036 27.5 5.0 23 197-219 6-28 (95)
26 PRK09609 hypothetical protein; 65.3 82 0.0018 29.1 10.3 24 60-83 46-69 (312)
27 PF11368 DUF3169: Protein of u 64.6 28 0.00061 30.7 7.1 18 152-169 8-25 (248)
28 PRK12489 anaerobic C4-dicarbox 63.7 1.5E+02 0.0032 28.8 13.9 30 197-226 173-202 (443)
29 PF02417 Chromate_transp: Chro 62.3 88 0.0019 25.7 10.7 55 126-180 45-100 (169)
30 COG2851 CitM H+/citrate sympor 61.7 11 0.00024 35.7 4.1 43 208-252 189-231 (433)
31 PF14143 YrhC: YrhC-like prote 61.2 59 0.0013 23.4 7.1 12 168-179 21-32 (72)
32 PF04995 CcmD: Heme exporter p 60.2 32 0.00069 22.2 5.0 18 213-230 26-43 (46)
33 PRK13661 hypothetical protein; 58.9 17 0.00037 30.8 4.5 33 56-88 39-71 (182)
34 PRK10862 SoxR reducing system 57.4 20 0.00044 29.4 4.6 36 60-95 87-124 (154)
35 PF09335 SNARE_assoc: SNARE as 57.2 61 0.0013 24.5 7.1 43 48-92 78-121 (123)
36 PRK15419 proline:sodium sympor 55.5 2.1E+02 0.0045 27.9 12.2 41 200-240 457-501 (502)
37 PRK01637 hypothetical protein; 55.0 1.3E+02 0.0029 26.9 9.9 35 145-179 194-228 (286)
38 COG3086 RseC Positive regulato 52.7 86 0.0019 25.7 7.3 33 62-94 90-123 (150)
39 PF05568 ASFV_J13L: African sw 49.7 1E+02 0.0023 25.3 7.3 20 234-253 90-109 (189)
40 PF06295 DUF1043: Protein of u 49.5 27 0.00059 27.7 4.0 21 76-96 1-21 (128)
41 TIGR03141 cytochro_ccmD heme e 46.0 79 0.0017 20.3 5.3 12 217-228 31-42 (45)
42 TIGR00937 2A51 chromate transp 45.5 2.6E+02 0.0057 26.2 11.9 55 126-180 37-92 (368)
43 PF12822 DUF3816: Protein of u 45.2 21 0.00045 29.1 2.8 32 56-87 30-61 (172)
44 PF06305 DUF1049: Protein of u 44.9 44 0.00096 22.9 4.1 16 213-228 43-58 (68)
45 PF04277 OAD_gamma: Oxaloaceta 44.7 95 0.0021 22.0 6.0 9 216-224 29-37 (79)
46 PF09512 ThiW: Thiamine-precur 43.5 1.7E+02 0.0036 24.1 7.7 42 52-93 66-113 (150)
47 COG4956 Integral membrane prot 43.3 2.8E+02 0.006 25.8 9.9 15 165-179 117-131 (356)
48 PF12270 Cyt_c_ox_IV: Cytochro 42.5 1.3E+02 0.0029 24.3 6.9 26 235-260 66-91 (137)
49 PRK10520 rhtB homoserine/homos 42.3 2.1E+02 0.0045 24.0 9.2 43 126-168 11-55 (205)
50 PRK00191 tatA twin arginine tr 41.6 42 0.00091 24.9 3.6 38 215-254 37-74 (84)
51 PF15102 TMEM154: TMEM154 prot 39.8 10 0.00022 31.1 0.1 15 236-250 98-112 (146)
52 COG3105 Uncharacterized protei 39.3 87 0.0019 25.2 5.3 28 73-100 7-34 (138)
53 COG4858 Uncharacterized membra 37.7 66 0.0014 27.6 4.7 21 152-172 161-181 (226)
54 PF06695 Sm_multidrug_ex: Puta 37.2 1.4E+02 0.0031 23.3 6.3 45 68-112 8-54 (121)
55 COG1238 Predicted membrane pro 37.1 1.4E+02 0.0031 24.8 6.6 51 133-183 32-82 (161)
56 PF06195 DUF996: Protein of un 36.0 2.3E+02 0.005 22.8 9.1 33 198-230 77-109 (139)
57 PRK11404 putative PTS system 36.0 4.3E+02 0.0093 25.9 18.6 23 154-176 400-422 (482)
58 COG5336 Uncharacterized protei 35.7 2E+02 0.0043 22.5 6.6 16 154-169 51-66 (116)
59 PF08507 COPI_assoc: COPI asso 35.3 1.3E+02 0.0029 23.8 6.0 14 166-179 70-83 (136)
60 PRK00523 hypothetical protein; 35.2 1.3E+02 0.0029 21.5 5.2 26 201-226 11-36 (72)
61 PF15420 Abhydrolase_9_N: Alph 35.2 3E+02 0.0064 23.8 10.0 79 145-226 81-163 (208)
62 COG4732 Predicted membrane pro 35.0 70 0.0015 26.5 4.2 28 55-82 37-65 (177)
63 PRK01844 hypothetical protein; 33.5 1.4E+02 0.0029 21.5 5.0 27 201-227 10-36 (72)
64 PF05454 DAG1: Dystroglycan (D 32.4 15 0.00032 33.5 0.0 27 232-258 205-231 (290)
65 PF13124 DUF3963: Protein of u 32.3 1.3E+02 0.0028 18.7 4.2 17 17-33 7-23 (40)
66 PF15102 TMEM154: TMEM154 prot 31.5 25 0.00054 28.8 1.2 22 228-249 94-115 (146)
67 PF05337 CSF-1: Macrophage col 31.2 16 0.00035 33.0 0.0 48 201-248 234-283 (285)
68 PF05552 TM_helix: Conserved T 31.1 1.6E+02 0.0034 19.3 4.9 25 81-105 17-45 (53)
69 TIGR00948 2a75 L-lysine export 30.7 3E+02 0.0064 22.4 10.0 37 134-174 4-40 (177)
70 COG3190 FliO Flagellar biogene 30.6 1.3E+02 0.0027 24.5 5.0 30 192-221 21-50 (137)
71 TIGR00937 2A51 chromate transp 30.5 4.6E+02 0.01 24.6 12.0 66 115-180 232-300 (368)
72 PRK15083 PTS system mannitol-s 30.4 89 0.0019 31.6 5.1 22 153-174 268-289 (639)
73 COG4280 Predicted membrane pro 30.2 1.4E+02 0.003 26.0 5.5 63 151-228 32-94 (236)
74 PF09512 ThiW: Thiamine-precur 29.6 82 0.0018 25.9 3.8 28 55-82 28-56 (150)
75 COG3105 Uncharacterized protei 28.9 65 0.0014 25.9 3.0 31 195-225 8-38 (138)
76 COG2245 Predicted membrane pro 28.7 3.6E+02 0.0078 22.8 9.5 31 198-228 102-132 (182)
77 PF07857 DUF1632: CEO family ( 28.7 62 0.0013 28.9 3.3 55 158-214 80-134 (254)
78 PF01741 MscL: Large-conductan 28.6 1.1E+02 0.0025 24.3 4.5 15 217-231 91-105 (128)
79 PF01618 MotA_ExbB: MotA/TolQ/ 28.5 2.9E+02 0.0064 21.7 7.2 10 156-165 70-79 (139)
80 PF04298 Zn_peptidase_2: Putat 28.5 1.1E+02 0.0025 26.7 4.8 52 204-255 9-69 (222)
81 COG2832 Uncharacterized protei 28.4 1.7E+02 0.0036 23.2 5.2 20 48-69 21-40 (119)
82 PF08006 DUF1700: Protein of u 28.3 3.4E+02 0.0074 22.4 8.0 8 88-95 157-164 (181)
83 KOG2533 Permease of the major 28.1 1.5E+02 0.0032 29.1 6.1 17 75-91 177-193 (495)
84 PF08374 Protocadherin: Protoc 27.9 76 0.0016 27.7 3.5 54 167-220 6-64 (221)
85 PF01544 CorA: CorA-like Mg2+ 27.4 22 0.00047 31.3 0.2 59 152-218 234-292 (292)
86 PF06341 DUF1056: Protein of u 27.2 1.5E+02 0.0032 20.8 4.2 45 138-182 14-58 (63)
87 PF06697 DUF1191: Protein of u 26.3 94 0.002 28.2 4.0 25 221-250 243-267 (278)
88 PRK10429 melibiose:sodium symp 26.3 5.6E+02 0.012 24.2 9.7 11 216-226 436-446 (473)
89 PF01810 LysE: LysE type trans 25.7 3.5E+02 0.0075 22.1 7.3 87 133-231 5-93 (191)
90 PF02009 Rifin_STEVOR: Rifin/s 25.7 1.3E+02 0.0027 27.7 4.8 24 197-220 260-283 (299)
91 PF15330 SIT: SHP2-interacting 24.7 1.7E+02 0.0036 22.6 4.6 12 210-221 15-26 (107)
92 PF03606 DcuC: C4-dicarboxylat 24.6 97 0.0021 30.0 4.1 21 203-223 206-226 (465)
93 PRK03818 putative transporter; 24.5 7.1E+02 0.015 24.8 11.6 29 147-176 114-142 (552)
94 PF15048 OSTbeta: Organic solu 24.4 51 0.0011 26.2 1.7 23 190-212 32-54 (125)
95 PRK11026 ftsX cell division AB 24.4 4.1E+02 0.0089 24.2 8.0 20 204-223 287-306 (309)
96 COG3275 LytS Putative regulato 24.2 3.2E+02 0.007 27.0 7.3 19 61-79 74-92 (557)
97 PRK11677 hypothetical protein; 23.9 79 0.0017 25.5 2.8 24 196-219 4-27 (134)
98 PF14163 SieB: Superinfection 23.5 3.6E+02 0.0079 21.5 6.7 36 55-90 15-55 (151)
99 PRK13727 conjugal transfer pil 23.0 2.6E+02 0.0055 20.3 4.9 31 202-232 45-75 (80)
100 PF06570 DUF1129: Protein of u 22.9 1.3E+02 0.0028 25.6 4.2 24 152-175 146-169 (206)
101 TIGR02185 Trep_Strep conserved 22.7 2.5E+02 0.0055 23.7 5.8 28 198-225 161-188 (189)
102 COG2851 CitM H+/citrate sympor 22.7 1.1E+02 0.0024 29.2 3.8 47 198-244 182-228 (433)
103 PF15176 LRR19-TM: Leucine-ric 22.5 2.5E+02 0.0055 21.5 5.1 9 199-207 20-28 (102)
104 PF12794 MscS_TM: Mechanosensi 22.3 6.3E+02 0.014 23.3 16.4 15 56-70 59-73 (340)
105 PRK07946 putative monovalent c 21.8 3.5E+02 0.0075 22.6 6.2 9 167-175 42-50 (163)
106 COG4736 CcoQ Cbb3-type cytochr 21.6 2.1E+02 0.0046 19.8 4.1 9 238-246 49-57 (60)
107 COG4854 Predicted membrane pro 21.4 2.2E+02 0.0048 22.3 4.7 39 208-246 40-78 (126)
108 PF06365 CD34_antigen: CD34/Po 21.3 1.1E+02 0.0025 26.3 3.4 44 204-247 113-157 (202)
109 KOG2563 Permease of the major 21.2 3.9E+02 0.0085 26.2 7.3 14 2-15 41-54 (480)
110 PF04367 DUF502: Protein of un 21.1 3.5E+02 0.0077 20.5 5.9 30 79-108 7-36 (108)
111 PF15179 Myc_target_1: Myc tar 21.1 2.3E+02 0.005 24.2 5.1 23 197-219 28-50 (197)
112 PF08114 PMP1_2: ATPase proteo 21.1 1.2E+02 0.0027 19.3 2.6 6 221-226 31-36 (43)
113 PRK01821 hypothetical protein; 20.0 4.6E+02 0.01 21.0 8.5 6 53-58 74-79 (133)
No 1
>COG0398 Uncharacterized conserved protein [Function unknown]
Probab=99.96 E-value=6.7e-28 Score=210.10 Aligned_cols=153 Identities=24% Similarity=0.420 Sum_probs=133.8
Q ss_pred hHHHHHHHHHHHHhhcchHHHHHHHHHHHhhhccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HhHH
Q 024843 19 LLKVLFPLMQWEATAFGRPVLAIVLIASLALFPVFLIPSGPSMWLAGMIFGYGLGFVIIMVGTTIGMVLPYWVGL-LFRD 97 (261)
Q Consensus 19 ~~~~l~~~~~w~~~~~g~~~~~i~~~~~~~~~p~~~iP~~~l~~~aG~lfG~~~g~~~~~~g~~lG~~i~f~igR-~~~~ 97 (261)
..+..+.+++|++++ |.+...+.+++.+...++.++|++++.+++|++||+++|++++++|+++|+.++|+++| ++||
T Consensus 31 ~~~~~~~l~~~i~~~-g~~~pl~~fil~~l~~~~~~iP~~il~l~~g~ifG~~~G~~~s~~G~~~gs~~~Fll~R~~gr~ 109 (223)
T COG0398 31 LLLDPETLREWIQAY-GALGPLVFFILLYLVATLPIIPGSILTLAGGLLFGPFLGFLYSLIGATAGSTLAFLLARYLGRD 109 (223)
T ss_pred hccCHHHHHHHHHHc-CchHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 445567899999987 43333333677777777778899999999999999999999999999999999999999 7899
Q ss_pred HHHHHHhhchHHHHHHHHHHcCcchhhhHHHHHhhccc-cchhhhhHHHhhcCCcchhHHHHHHhhhHHHHHHHHHHHHH
Q 024843 98 RIHQWLKRWPQQAAMLRLAAEGSWLHQFRMVALFRVSP-FPYTIFNYAIVVTSMRFWPYLCGSVAGMVPEAFIYIYSGRL 176 (261)
Q Consensus 98 ~i~~~l~~~~~~~~~~~~~~~~~~~~g~~~v~l~Rl~P-iP~~l~n~~aG~~~i~~~~f~~~t~lG~~p~~~l~~~~G~~ 176 (261)
+.++..+++++.+++++..+++ |++.+++.|++| +|++++||++|++++++++|.++|.+|++|.+++|+++|+.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~----g~~~i~~lrl~P~~P~~lvn~aaglt~is~~~f~ias~lG~~P~~i~y~~~G~~ 185 (223)
T COG0398 110 WVLKFVGGKEKVQRIDAGLERN----GFWAILLLRLIPIFPFDLVNYAAGLTGISFRDFAIATLLGKLPGTIVYTYLGSA 185 (223)
T ss_pred HHHHHhcccHHHHHHHHHHHhC----ChHHHHHHHHhhcCCHHHHHHHHhccCCcHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 9998888777777777777654 789999999999 79999999999999999999999999999999999999973
No 2
>COG0586 DedA Uncharacterized membrane-associated protein [Function unknown]
Probab=99.87 E-value=1.8e-20 Score=162.15 Aligned_cols=155 Identities=19% Similarity=0.247 Sum_probs=124.9
Q ss_pred HHHHHHHHh-hcchHHHHHHHHHHHhhhccccCChHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhHHHHHHHHH-hH
Q 024843 24 FPLMQWEAT-AFGRPVLAIVLIASLALFPVFLIPSGPSMWLAGMIFGY-----GLGFVIIMVGTTIGMVLPYWVGLL-FR 96 (261)
Q Consensus 24 ~~~~~w~~~-~~g~~~~~i~~~~~~~~~p~~~iP~~~l~~~aG~lfG~-----~~g~~~~~~g~~lG~~i~f~igR~-~~ 96 (261)
++...+.++ .+++...+++.++|...+...++|++++.+++|++-+. +..++.+.+|+++|+.+.|++||+ ++
T Consensus 4 ~~~~~~~~~~~~~~~~~f~~~f~e~~l~~~~~lPge~iL~~~G~l~~~g~~~~~~~i~~~~lga~lGd~i~Y~iGr~~G~ 83 (208)
T COG0586 4 ELLILWIQEGSLGYLGVFLILFLESGLLVGPPLPGEVLLLLAGALAAQGKLNLWLVILVATLGALLGDLISYWIGRRFGR 83 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcH
Confidence 344455444 45677888888999866666667999999999999753 567799999999999999999994 56
Q ss_pred HHHHHHHhh----chHHHHHHHHHHcCcchhhhHHHHHhhccccchhhhhHHHhhcCCcchhHHHHHHhhhHHHHHHHHH
Q 024843 97 DRIHQWLKR----WPQQAAMLRLAAEGSWLHQFRMVALFRVSPFPYTIFNYAIVVTSMRFWPYLCGSVAGMVPEAFIYIY 172 (261)
Q Consensus 97 ~~i~~~l~~----~~~~~~~~~~~~~~~~~~g~~~v~l~Rl~PiP~~l~n~~aG~~~i~~~~f~~~t~lG~~p~~~l~~~ 172 (261)
+..+++.+. .++.++-++..++ ||.+.++++||+|.-++++++.+|+++||+++|.+.+++|.+.|..++++
T Consensus 84 ~~l~~~~~~~~~~~~~l~~a~~~f~r----~G~~~vf~~RFip~vRt~ip~~AG~~~m~~~~F~~~n~~ga~iW~~~~~~ 159 (208)
T COG0586 84 KLLRKLWSYRLLKRKKLDKAELLFER----HGLFAIFLGRFIPGVRTLVPIVAGMSKMPLRRFLLYNILGALLWALVLTL 159 (208)
T ss_pred HHHHhhhhhccCCHHHHHHHHHHHHH----cCchhhhhhcccchhHhhhhHhhhhccCChHHHHHHHHHHHHHHHHHHHH
Confidence 666665542 2223333444443 68999999999998899999999999999999999999999999999999
Q ss_pred HHHHHHHhhh
Q 024843 173 SGRLIRTLAD 182 (261)
Q Consensus 173 ~G~~l~~~~~ 182 (261)
+|..+++..+
T Consensus 160 lGy~~G~~~~ 169 (208)
T COG0586 160 LGYLLGEVID 169 (208)
T ss_pred HHHHhccchH
Confidence 9999987544
No 3
>PF09335 SNARE_assoc: SNARE associated Golgi protein; InterPro: IPR015414 This is a entry contains SNARE associated Golgi proteins. The yeast member of this family (P36164 from SWISSPROT) localises with the t-SNARE Tlg2 [].
Probab=99.85 E-value=2.2e-20 Score=147.30 Aligned_cols=120 Identities=28% Similarity=0.494 Sum_probs=101.2
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-hHHHHHHHHhhchHHHHHHHHHHcCcchhhhHHHHHhhc
Q 024843 55 IPSGPSMWLAGMIFGYGLGFVIIMVGTTIGMVLPYWVGLL-FRDRIHQWLKRWPQQAAMLRLAAEGSWLHQFRMVALFRV 133 (261)
Q Consensus 55 iP~~~l~~~aG~lfG~~~g~~~~~~g~~lG~~i~f~igR~-~~~~i~~~l~~~~~~~~~~~~~~~~~~~~g~~~v~l~Rl 133 (261)
+|++++++++|+++|++.+++++.+|+++|+.++|++||. +++..++...++++.+++++..+. ..++|.+.+++.|+
T Consensus 1 iP~~~~~~~~g~~~g~~~~~~~~~~g~~~g~~~~y~lgr~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~l~~~~~ 79 (123)
T PF09335_consen 1 IPGSILLIAAGALFGPWLGFLIATLGAVLGSLLAYLLGRYFGRRRLRRKLRKKKRIKRIERIERW-FQKYGFWVLFLSRF 79 (123)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHH-HhhhhHHHHHHHHH
Confidence 5999999999999999999999999999999999999994 446666555544444443333221 11258899999999
Q ss_pred cc-cchhhhhHHHhhcCCcchhHHHHHHhhhHHHHHHHHHHHH
Q 024843 134 SP-FPYTIFNYAIVVTSMRFWPYLCGSVAGMVPEAFIYIYSGR 175 (261)
Q Consensus 134 ~P-iP~~l~n~~aG~~~i~~~~f~~~t~lG~~p~~~l~~~~G~ 175 (261)
+| +|++++|+++|++++++++|+.++++|.+|++.+++++|+
T Consensus 80 ~P~~P~~~~~~~ag~~~~~~~~f~~~~~~g~~~~~~~~~~~G~ 122 (123)
T PF09335_consen 80 IPGLPFDVVNYLAGITRMPFRRFFLASLIGKLPWTILYVLLGY 122 (123)
T ss_pred HHHccHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99 6999999999999999999999999999999999999996
No 4
>PRK10847 hypothetical protein; Provisional
Probab=99.84 E-value=1.2e-19 Score=158.06 Aligned_cols=150 Identities=16% Similarity=0.278 Sum_probs=114.7
Q ss_pred HHHHHHhhcch---HHHHHHHHHHHhhhccccCChHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhHHHHHHHH-H
Q 024843 26 LMQWEATAFGR---PVLAIVLIASLALFPVFLIPSGPSMWLAGMIFG-------YGLGFVIIMVGTTIGMVLPYWVGL-L 94 (261)
Q Consensus 26 ~~~w~~~~~g~---~~~~i~~~~~~~~~p~~~iP~~~l~~~aG~lfG-------~~~g~~~~~~g~~lG~~i~f~igR-~ 94 (261)
+.++++++ |+ +.++++.++|..+.+..++|++.+.+++|++.+ .+..++++++|+++|+.++|++|| .
T Consensus 18 ~~~~~~~~-g~~~y~~lfl~~~le~~~~~~~~lPge~~l~~~G~la~~~~~~~~~~~~~~~a~~Ga~lG~~i~Y~lGr~~ 96 (219)
T PRK10847 18 LAELVAQY-GVWVYAILFLILFCETGLVVTPFLPGDSLLFVAGALASLPTNDLNVHMMVALMLIAAIVGDAVNYTIGRLF 96 (219)
T ss_pred HHHHHHHh-hHHHHHHHHHHHHHHhccccCCCCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556654 43 346666666764445555799999999998875 245678999999999999999999 5
Q ss_pred hHHHHHHHHhh---chHHHHHHHHHHcCcchhhhHHHHHhhccccchhhhhHHHhhcCCcchhHHHHHHhhhHHHHHHHH
Q 024843 95 FRDRIHQWLKR---WPQQAAMLRLAAEGSWLHQFRMVALFRVSPFPYTIFNYAIVVTSMRFWPYLCGSVAGMVPEAFIYI 171 (261)
Q Consensus 95 ~~~~i~~~l~~---~~~~~~~~~~~~~~~~~~g~~~v~l~Rl~PiP~~l~n~~aG~~~i~~~~f~~~t~lG~~p~~~l~~ 171 (261)
+++.+++..++ .++.++.++..++ ||.+.++++|++|..++++++++|+++||+++|++.+.+|.++|..+++
T Consensus 97 G~~~l~~~~~~~~~~~~l~~~~~~~~r----~G~~~v~i~RfiP~~R~~~~~~aG~~~m~~~~F~~~~~lg~~~W~~~~~ 172 (219)
T PRK10847 97 GEKLFSNPNSKIFRRSYLDKTHQFYEK----HGGKTIILARFVPIVRTFAPFVAGMGHMSYRHFAAYNVIGALLWVLLFT 172 (219)
T ss_pred CHHHhhccccccCCHHHHHHHHHHHHH----cCCEEEEeeCCccchHhHHHHHhHhcCCChHHHHHHHHHHHHHHHHHHH
Confidence 56655432222 1223344444443 5789999999999767899999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 024843 172 YSGRLIRTL 180 (261)
Q Consensus 172 ~~G~~l~~~ 180 (261)
++|+.+++.
T Consensus 173 ~~Gy~~g~~ 181 (219)
T PRK10847 173 YAGYFFGTL 181 (219)
T ss_pred HHHHHHcCC
Confidence 999998764
No 5
>COG1238 Predicted membrane protein [Function unknown]
Probab=99.61 E-value=2.1e-14 Score=118.95 Aligned_cols=150 Identities=15% Similarity=0.126 Sum_probs=113.3
Q ss_pred HHHHHHHHhhcchHHHHHHHHHHHhhhccccCChHHHHHHHHHH-HHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHH
Q 024843 24 FPLMQWEATAFGRPVLAIVLIASLALFPVFLIPSGPSMWLAGMI-FGYGLGFVIIMVGTTIGMVLPYWVGLLFRDRIHQW 102 (261)
Q Consensus 24 ~~~~~w~~~~~g~~~~~i~~~~~~~~~p~~~iP~~~l~~~aG~l-fG~~~g~~~~~~g~~lG~~i~f~igR~~~~~i~~~ 102 (261)
+...++..+..+++++++..|++.+++|+ |.+++.+..-.. ..++.-.+++++|+++|++++|++||+..+.+.+.
T Consensus 7 ~~~~~~~~~~~a~~~Lf~vaF~eat~lP~---~sE~~l~~m~~~~~~~~~~~~vAt~gs~lG~~~~y~lG~~~~~~~~~~ 83 (161)
T COG1238 7 DWTLSLMSQAYAYAGLFIVAFLEATLLPV---PSEVLLAPMLLLGLNAWILALVATLGSVLGGLVNYALGRFLPEFIARR 83 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC---ChHHHHHHHHHcCCchHHHHHHHHHHhhHhHHHHHHHHhcchHHHHHH
Confidence 34556666666889999999999999998 877664322111 55677889999999999999999999776655442
Q ss_pred HhhchHHHHHHHHHHcCcchhhhHHHHHhhccccchhhhhHHHhhcCCcchhHHHHHHhhhHHHHHHHHHHHHHHH
Q 024843 103 LKRWPQQAAMLRLAAEGSWLHQFRMVALFRVSPFPYTIFNYAIVVTSMRFWPYLCGSVAGMVPEAFIYIYSGRLIR 178 (261)
Q Consensus 103 l~~~~~~~~~~~~~~~~~~~~g~~~v~l~Rl~PiP~~l~n~~aG~~~i~~~~f~~~t~lG~~p~~~l~~~~G~~l~ 178 (261)
+.....++.++..++...++|.+.++++-+.|+| ++++.++|..++++++|++..++|+..+.++.+++....+
T Consensus 84 -~~~~~~~~~~~~~~~~~~ryg~~~ll~s~lp~ig-d~~t~~aG~~~~~~~~f~~~~~igk~~Ry~~la~~~~~~~ 157 (161)
T COG1238 84 -WFPGSEEALEKLQEKWYRRYGVWTLLLSWLPPIG-DVLTLLAGWLRLNFLPFILLVFLGKAARYLLLAALTLLGG 157 (161)
T ss_pred -hhcchHHHHHHHHHHHHHHHHHHHHHHHhccccc-hHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1111122223322211223689999999999999 9999999999999999999999999999999888876543
No 6
>KOG3140 consensus Predicted membrane protein [Function unknown]
Probab=99.52 E-value=8.2e-14 Score=124.38 Aligned_cols=145 Identities=20% Similarity=0.332 Sum_probs=120.9
Q ss_pred HHHHHHHHHHHhhhccccCChHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HhHHHHHHHHhhchHHHHHHH
Q 024843 37 PVLAIVLIASLALFPVFLIPSGPS-MWLAGMIFGYGLGFVIIMVGTTIGMVLPYWVGL-LFRDRIHQWLKRWPQQAAMLR 114 (261)
Q Consensus 37 ~~~~i~~~~~~~~~p~~~iP~~~l-~~~aG~lfG~~~g~~~~~~g~~lG~~i~f~igR-~~~~~i~~~l~~~~~~~~~~~ 114 (261)
....+.+++.+.+...+.+||..+ .+.+|++||.+.|++++...+++|++++|.+++ .+|+++.++...+.+..+.+-
T Consensus 94 a~~~~~~~~~y~f~qtfaipG~~fls~~aG~l~~~~~g~~Lv~~~~~~ga~~cy~lS~~f~r~~v~~l~p~~~~~~~~~~ 173 (275)
T KOG3140|consen 94 AAVLLGFIAAYVFLQTFAIPGSIFLSLLAGALFGVFKGVLLVCLLSTLGASLCYLLSKLFGRPLVLKLFPDKIAFLQQDV 173 (275)
T ss_pred HHHHHHHHHHHHHHHhcccccHHHHHHHHHHhhccceEEeeeeeccchhHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHH
Confidence 456678888999999889998765 789999999999999999999999999999999 778888888766443332221
Q ss_pred HHHcCcchhhhHHHHHhhccc-cchhhhhHHHhhcCCcchhHHHHHHhhhHHHHHHHHHHHHHHHHhhhhh
Q 024843 115 LAAEGSWLHQFRMVALFRVSP-FPYTIFNYAIVVTSMRFWPYLCGSVAGMVPEAFIYIYSGRLIRTLADVK 184 (261)
Q Consensus 115 ~~~~~~~~~g~~~v~l~Rl~P-iP~~l~n~~aG~~~i~~~~f~~~t~lG~~p~~~l~~~~G~~l~~~~~~~ 184 (261)
..+++ +-+..+.+.|++| .|+++.|+++++.+++.+.|++++++|.+|..++++-.|+.+++..+..
T Consensus 174 ~~~~~---~~~~~~~~lrlsp~~pnw~~n~~spvl~Vp~~~f~~~~~~gl~p~s~i~v~ags~l~~l~s~~ 241 (275)
T KOG3140|consen 174 ELNRN---SLLNYMLFLRLSPFLPNWVINIVSPVLGVPLRIFFIGTFKGLIPYSFIEVRAGSTLASLTSAS 241 (275)
T ss_pred Hhccc---chhhhhhhhhhccCCHHHHHHHHHHhhccchHHHHHHHHHhcCchHHHHhhccchHhhhcccc
Confidence 11222 1367899999999 5999999999999999999999999999999999999999988865543
No 7
>PF06695 Sm_multidrug_ex: Putative small multi-drug export protein; InterPro: IPR009577 This family contains a small number of putative small multi-drug export proteins.
Probab=95.09 E-value=0.45 Score=37.64 Aligned_cols=95 Identities=11% Similarity=0.048 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHH------HHhhch-HHHHHHHHHHcCcchhhhHHHHHhhccccc---h
Q 024843 69 GYGLGFVIIMVGTTIGMVLPYWVGLLFRDRIHQ------WLKRWP-QQAAMLRLAAEGSWLHQFRMVALFRVSPFP---Y 138 (261)
Q Consensus 69 G~~~g~~~~~~g~~lG~~i~f~igR~~~~~i~~------~l~~~~-~~~~~~~~~~~~~~~~g~~~v~l~Rl~PiP---~ 138 (261)
+++..++++.+|+++...+.++.-+...++.++ ..++.. +.++-++.++ ++|++.+++.=.+|+| -
T Consensus 15 ~p~~~~~~~~lGN~l~vp~i~~~~~~i~~~l~~~~~~~~~~~~~~~k~~~~~~~i~----kyg~~GL~lFVaIPlP~TG~ 90 (121)
T PF06695_consen 15 PPWEAFLLAFLGNILPVPFILLFLDKILKWLKRKPWLKKFYEWLEKKAEKKSKKIE----KYGFWGLALFVAIPLPGTGA 90 (121)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH----HHhHHHHHHHHhCCCCcchH
Confidence 356777888888888877776665533332221 111100 0011111222 2577888877778887 3
Q ss_pred hhhhHHHhhcCCcchhHHHHHHhhhHHHH
Q 024843 139 TIFNYAIVVTSMRFWPYLCGSVAGMVPEA 167 (261)
Q Consensus 139 ~l~n~~aG~~~i~~~~f~~~t~lG~~p~~ 167 (261)
..-+.++-+.+++.++=+++..+|.+...
T Consensus 91 wtgal~a~llg~~~~~~~~ai~~Gv~ia~ 119 (121)
T PF06695_consen 91 WTGALIASLLGMDKKKAFLAIFLGVLIAG 119 (121)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 56667788899999999998888876543
No 8
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=93.73 E-value=0.091 Score=41.73 Aligned_cols=56 Identities=16% Similarity=0.304 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcCCCCCCCC-CCccccccCCCccCCC
Q 024843 195 IVYNIISFIIAVLTIIAFTVYAKRALKELERGEANGEETSTST-GSGFEMNKLPLERTKH 253 (261)
Q Consensus 195 ~~~~~v~~~~~vl~~i~~~~~~kr~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 253 (261)
....++|.+..+++++++..|.-|+++|....+.+- .|++ ++|.-++.||.+-||+
T Consensus 66 i~~Ii~gv~aGvIg~Illi~y~irR~~Kk~~~~~~p---~P~~~d~~~p~~~~~~~~~~~ 122 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGIILLISYCIRRLRKKSSSDVQP---LPEEDDTDVPLSSVEIENPET 122 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS---------------------------------
T ss_pred eeehhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCC---CCCCCCCCCCcceeeecCCCC
Confidence 344455666666666665555444444333332221 3444 7888999999998874
No 9
>TIGR02359 thiW thiW protein. Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved,to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=89.59 E-value=10 Score=31.46 Aligned_cols=33 Identities=12% Similarity=0.101 Sum_probs=27.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 024843 56 PSGPSMWLAGMIFGYGLGFVIIMVGTTIGMVLP 88 (261)
Q Consensus 56 P~~~l~~~aG~lfG~~~g~~~~~~g~~lG~~i~ 88 (261)
+++..++++|+++|||+|.....+++.++..+.
T Consensus 33 ~~~i~~vlaavllGP~~g~~~a~i~~ll~~l~~ 65 (160)
T TIGR02359 33 VQHFVNVIAGVLLGPWYALAVAFIIGLLRNTLG 65 (160)
T ss_pred hhHHHHHHHHHHHchHHHHHHHHHHHHHHHHhC
Confidence 456778999999999999998888888877654
No 10
>PRK01844 hypothetical protein; Provisional
Probab=86.03 E-value=2.2 Score=30.58 Aligned_cols=33 Identities=21% Similarity=0.512 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHH-HhHHHHHHHHhhch
Q 024843 71 GLGFVIIMVGTTIGMVLPYWVGL-LFRDRIHQWLKRWP 107 (261)
Q Consensus 71 ~~g~~~~~~g~~lG~~i~f~igR-~~~~~i~~~l~~~~ 107 (261)
|..+++..++.++|...+|+++| ++.+ +++++|
T Consensus 4 ~~~I~l~I~~li~G~~~Gff~ark~~~k----~lk~NP 37 (72)
T PRK01844 4 WLGILVGVVALVAGVALGFFIARKYMMN----YLQKNP 37 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHCC
Confidence 45567778899999999999999 6554 445554
No 11
>PRK00523 hypothetical protein; Provisional
Probab=81.28 E-value=4.6 Score=29.00 Aligned_cols=26 Identities=19% Similarity=0.418 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHH-HhHH
Q 024843 72 LGFVIIMVGTTIGMVLPYWVGL-LFRD 97 (261)
Q Consensus 72 ~g~~~~~~g~~lG~~i~f~igR-~~~~ 97 (261)
..+++..++.++|...+|+++| ++.+
T Consensus 6 l~I~l~i~~li~G~~~Gffiark~~~k 32 (72)
T PRK00523 6 LALGLGIPLLIVGGIIGYFVSKKMFKK 32 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777788999999999999 6654
No 12
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=78.97 E-value=3.5 Score=30.34 Aligned_cols=19 Identities=21% Similarity=0.282 Sum_probs=12.5
Q ss_pred hhcCCCCCCCCCCccc-ccc
Q 024843 227 EANGEETSTSTGSGFE-MNK 245 (261)
Q Consensus 227 ~~~~~~~~~~~~~~~~-~~~ 245 (261)
++.+.+-+-|++++.| +++
T Consensus 48 eraEDSGnES~Gd~EeeL~~ 67 (81)
T PF00558_consen 48 ERAEDSGNESDGDEEEELSA 67 (81)
T ss_dssp CTTTCCHCTTTTCCHH-CHC
T ss_pred cccccCCCCCCCcHHHHHHH
Confidence 3466666777777777 554
No 13
>COG2059 ChrA Chromate transport protein ChrA [Inorganic ion transport and metabolism]
Probab=78.71 E-value=41 Score=28.85 Aligned_cols=88 Identities=18% Similarity=0.195 Sum_probs=55.9
Q ss_pred HHHHHhhccccchhh-hhHHHhhcCCcchhHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhcCCCCchHHHHHHHHHHHHH
Q 024843 126 RMVALFRVSPFPYTI-FNYAIVVTSMRFWPYLCGSVAGMVPEAFIYIYSGRLIRTLADVKYGNYHMTTVEIVYNIISFII 204 (261)
Q Consensus 126 ~~v~l~Rl~PiP~~l-~n~~aG~~~i~~~~f~~~t~lG~~p~~~l~~~~G~~l~~~~~~~~g~~~~~~~~~~~~~v~~~~ 204 (261)
..+.+++++|-|.+. +....|.-.-++.--+++.....+|..++...+-.......|. ...+..+..+-.+.
T Consensus 50 ~~laisq~lPGP~a~~la~~vGy~~~G~~Ga~ia~lafvLPs~i~~~~l~~~~~~~~~~-------~~v~~~~~glk~~i 122 (195)
T COG2059 50 DALAISQLLPGPIATQLAIYVGYKLAGILGALIAGLAFVLPSILIMLGLALLLKRFGDL-------PLVKGILKGLKPAI 122 (195)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc-------hHHHHHHHHHHHHH
Confidence 478899999988532 2223566666777777888888889999888888777665332 12333343344444
Q ss_pred HHHHHHHHHHHHHHHH
Q 024843 205 AVLTIIAFTVYAKRAL 220 (261)
Q Consensus 205 ~vl~~i~~~~~~kr~~ 220 (261)
.+++....+.+.|+..
T Consensus 123 i~lv~~~~~~l~~~~~ 138 (195)
T COG2059 123 IALVLQAVWRLGKKAL 138 (195)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 4455555566666665
No 14
>PRK12821 aspartyl/glutamyl-tRNA amidotransferase subunit C-like protein; Provisional
Probab=75.87 E-value=81 Score=30.66 Aligned_cols=26 Identities=15% Similarity=0.229 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024843 59 PSMWLAGMIFGYGLGFVIIMVGTTIG 84 (261)
Q Consensus 59 ~l~~~aG~lfG~~~g~~~~~~g~~lG 84 (261)
+.+.++|++|||++|.+...++-++|
T Consensus 100 Ipi~l~G~LFGP~~G~l~g~lsDlLg 125 (477)
T PRK12821 100 ILVKISGLLFGPIIGIFSAATIDFLT 125 (477)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34678999999999999988888888
No 15
>PF09835 DUF2062: Uncharacterized protein conserved in bacteria (DUF2062); InterPro: IPR018639 This domain, found in various prokaryotic proteins, has no known function. It is found at the C-terminal of family 2 glycosyltransferase proteins, in addition to proteins of unknown function.
Probab=74.93 E-value=43 Score=27.04 Aligned_cols=98 Identities=8% Similarity=0.010 Sum_probs=52.0
Q ss_pred Hhhcccc-chhhh-hH-HHhhcCCcchhHHHHHHhhhHHHHHHH-----HHHHHHHHHhhh-----hhc-CCCCchH---
Q 024843 130 LFRVSPF-PYTIF-NY-AIVVTSMRFWPYLCGSVAGMVPEAFIY-----IYSGRLIRTLAD-----VKY-GNYHMTT--- 192 (261)
Q Consensus 130 l~Rl~Pi-P~~l~-n~-~aG~~~i~~~~f~~~t~lG~~p~~~l~-----~~~G~~l~~~~~-----~~~-g~~~~~~--- 192 (261)
+.-++|+ +.+.. .. ++=..|.+..--++++.++. |.+... ..+|+.+-+... ..+ ..+..+.
T Consensus 31 fig~~P~~g~~~~l~~~la~~~r~N~~aa~~~~~i~n-Plt~~~i~~~~y~vG~~ll~~~~~~~~~~~~~~~~~~~~~~~ 109 (154)
T PF09835_consen 31 FIGFLPIFGLQTVLAIALALLFRLNKPAAILGTWISN-PLTIPPIYPLSYRVGSFLLGGPPEEFAALFEFDWSLMHWSDL 109 (154)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHccHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHhCCChhhhhhhcccccccchHHHH
Confidence 3348884 55432 22 34466888888888888854 555432 235665544322 101 0111111
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Q 024843 193 ------VEIVYNIISFIIAVLTIIAFTVYAKRALKELERGEA 228 (261)
Q Consensus 193 ------~~~~~~~v~~~~~vl~~i~~~~~~kr~~~~~~~~~~ 228 (261)
....+.+.+++.+++..+..+...++..++.++++.
T Consensus 110 ~~~~~~~~~~~~~G~~i~~~v~~~i~Y~l~~~~~~~~r~~r~ 151 (154)
T PF09835_consen 110 LESLWEFGLPFLLGSLILGIVLGIISYFLVYFLVRKYRKRRR 151 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112233345566666666777777777777666654
No 16
>PF11669 WBP-1: WW domain-binding protein 1; InterPro: IPR021684 This family of proteins represents WBP-1, a ligand of the WW domain of Yes-associated protein. This protein has a proline-rich domain. WBP-1 does not bind to the SH3 domain [].
Probab=71.95 E-value=20 Score=27.48 Aligned_cols=37 Identities=11% Similarity=0.184 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcCCCCC
Q 024843 198 NIISFIIAVLTIIAFTVYAKRALKELERGEANGEETS 234 (261)
Q Consensus 198 ~~v~~~~~vl~~i~~~~~~kr~~~~~~~~~~~~~~~~ 234 (261)
.++.+++++++...-....+|..++++.++++.|...
T Consensus 24 FWlv~~liill~c~c~~~~~r~r~~~~~q~rq~e~~~ 60 (102)
T PF11669_consen 24 FWLVWVLIILLSCCCACRHRRRRRRLQQQQRQREINL 60 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccc
Confidence 3344333333333333334444455555555444433
No 17
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=71.38 E-value=8.6 Score=30.57 Aligned_cols=39 Identities=26% Similarity=0.441 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHhHHHHHHHHHhHH
Q 024843 59 PSMWLAGMIFGYGLG--FVIIMVGTTIGMVLPYWVGLLFRD 97 (261)
Q Consensus 59 ~l~~~aG~lfG~~~g--~~~~~~g~~lG~~i~f~igR~~~~ 97 (261)
.+.+++|+..|...+ -..+.+++.+|-.++|++.|++.+
T Consensus 79 ll~li~g~~l~~~~~~~e~~~~l~~l~~l~~~~~~~~~~~~ 119 (135)
T PF04246_consen 79 LLALIAGAVLGSYLGGSELWAILGGLLGLALGFLILRLFDR 119 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455666666666554 378888888888999988886543
No 18
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=71.24 E-value=7.1 Score=27.42 Aligned_cols=22 Identities=14% Similarity=0.545 Sum_probs=16.7
Q ss_pred HHHHHHHHHhHHHHHHHH-HhHH
Q 024843 76 IIMVGTTIGMVLPYWVGL-LFRD 97 (261)
Q Consensus 76 ~~~~g~~lG~~i~f~igR-~~~~ 97 (261)
+..++.++|..++|+++| ++++
T Consensus 2 ~iilali~G~~~Gff~ar~~~~k 24 (64)
T PF03672_consen 2 LIILALIVGAVIGFFIARKYMEK 24 (64)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677888899999999 6654
No 19
>PRK11677 hypothetical protein; Provisional
Probab=69.74 E-value=11 Score=30.40 Aligned_cols=23 Identities=9% Similarity=0.213 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhH
Q 024843 74 FVIIMVGTTIGMVLPYWVGLLFR 96 (261)
Q Consensus 74 ~~~~~~g~~lG~~i~f~igR~~~ 96 (261)
++++.+|.++|.+++|+++|+..
T Consensus 3 W~~a~i~livG~iiG~~~~R~~~ 25 (134)
T PRK11677 3 WEYALIGLVVGIIIGAVAMRFGN 25 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcc
Confidence 46677899999999999999754
No 20
>PRK10527 hypothetical protein; Provisional
Probab=67.69 E-value=31 Score=27.46 Aligned_cols=38 Identities=26% Similarity=0.462 Sum_probs=27.6
Q ss_pred HhhhccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHhhchHHH
Q 024843 47 LALFPVFLIPSGPSMWLAGMIFGYGLGFVIIMVGTTIGMVLPYWVGLLFRDRIHQWLKRWPQQA 110 (261)
Q Consensus 47 ~~~~p~~~iP~~~l~~~aG~lfG~~~g~~~~~~g~~lG~~i~f~igR~~~~~i~~~l~~~~~~~ 110 (261)
.+++|+ +|.+++.+++.+.|. ...++.++|+.+++.+.
T Consensus 20 Gi~LPl--LPTTPFlLLAa~cfa------------------------RsSpR~~~WL~~h~~fG 57 (125)
T PRK10527 20 GVVLPL--LPTTPFILLAAWCFA------------------------RSSPRFHAWLLYRSWFG 57 (125)
T ss_pred HHhccC--CCCcHHHHHHHHHHH------------------------cCCHHHHHHHHcCchhh
Confidence 356776 499999999998886 23456777777766554
No 21
>PF03773 DUF318: Predicted permease; InterPro: IPR005524 This family of predicted integral membrane proteins.
Probab=67.02 E-value=1e+02 Score=28.04 Aligned_cols=43 Identities=9% Similarity=-0.207 Sum_probs=30.6
Q ss_pred hHHHHHhhcccc-chhhhhHHHhhcCCcchhHHHHHHhhhHHHH
Q 024843 125 FRMVALFRVSPF-PYTIFNYAIVVTSMRFWPYLCGSVAGMVPEA 167 (261)
Q Consensus 125 ~~~v~l~Rl~Pi-P~~l~n~~aG~~~i~~~~f~~~t~lG~~p~~ 167 (261)
....+++-++|+ +...++.+.++.+-+...-..-+++-..|..
T Consensus 53 ~~a~~~G~~~p~C~c~~~P~~~~l~~~Ga~~~~~~aFl~a~p~~ 96 (307)
T PF03773_consen 53 LLASLLGALLPVCSCGAVPVARGLLRKGAPLGAAMAFLLASPLL 96 (307)
T ss_pred HHHHHHHhccCCCcccHHHHHHHHHHCCCCcchhHHHHHhhHHh
Confidence 467778888995 8899999999888766655555554444443
No 22
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=66.50 E-value=4.5 Score=32.12 Aligned_cols=20 Identities=15% Similarity=0.301 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 024843 203 IIAVLTIIAFTVYAKRALKE 222 (261)
Q Consensus 203 ~~~vl~~i~~~~~~kr~~~~ 222 (261)
++.++++++..+..||++|+
T Consensus 10 ~~i~l~~~~~~~~~rRR~r~ 29 (130)
T PF12273_consen 10 VAILLFLFLFYCHNRRRRRR 29 (130)
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 33334444455556666655
No 23
>PF07155 ECF-ribofla_trS: ECF-type riboflavin transporter, S component; InterPro: IPR009825 This family consists of several bacterial proteins of around 180 residues in length that appear to be multi-pass membrane proteins. The function of this family is unknown.; GO: 0016020 membrane
Probab=66.24 E-value=9.4 Score=31.29 Aligned_cols=33 Identities=24% Similarity=0.456 Sum_probs=29.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 024843 56 PSGPSMWLAGMIFGYGLGFVIIMVGTTIGMVLP 88 (261)
Q Consensus 56 P~~~l~~~aG~lfG~~~g~~~~~~g~~lG~~i~ 88 (261)
|++...+.+|.++||..|.+...+|..+++.+.
T Consensus 37 ~~~~~i~l~~~l~Gp~~G~ivg~ig~~l~dll~ 69 (169)
T PF07155_consen 37 LGSIPIILAGLLFGPKYGAIVGAIGDLLSDLLS 69 (169)
T ss_pred hhhHHHHHHHHHHChHHHHHHHHHHHHHHHHhC
Confidence 567788999999999999999999999998854
No 24
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.95 E-value=18 Score=25.81 Aligned_cols=33 Identities=18% Similarity=0.401 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHH-HhHHHHHHHHhhch
Q 024843 71 GLGFVIIMVGTTIGMVLPYWVGL-LFRDRIHQWLKRWP 107 (261)
Q Consensus 71 ~~g~~~~~~g~~lG~~i~f~igR-~~~~~i~~~l~~~~ 107 (261)
|.++++..++-.+|...+|+++| ... +.++++|
T Consensus 4 ~lail~ivl~ll~G~~~G~fiark~~~----k~lk~NP 37 (71)
T COG3763 4 WLAILLIVLALLAGLIGGFFIARKQMK----KQLKDNP 37 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhCC
Confidence 45556666677777778899998 544 4445554
No 25
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=65.45 E-value=17 Score=27.54 Aligned_cols=23 Identities=22% Similarity=0.456 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 024843 197 YNIISFIIAVLTIIAFTVYAKRA 219 (261)
Q Consensus 197 ~~~v~~~~~vl~~i~~~~~~kr~ 219 (261)
++++++++++++++..-+-+|+.
T Consensus 6 ~llL~l~LA~lLlisSevaa~~~ 28 (95)
T PF07172_consen 6 FLLLGLLLAALLLISSEVAAREL 28 (95)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHh
Confidence 44455555555554444444433
No 26
>PRK09609 hypothetical protein; Provisional
Probab=65.26 E-value=82 Score=29.05 Aligned_cols=24 Identities=29% Similarity=0.544 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 024843 60 SMWLAGMIFGYGLGFVIIMVGTTI 83 (261)
Q Consensus 60 l~~~aG~lfG~~~g~~~~~~g~~l 83 (261)
.+.++|++|||++|.+...+..++
T Consensus 46 PviI~G~LFGPv~G~ivG~lsDLL 69 (312)
T PRK09609 46 PIKITGFIFGPIVGFFTGLLSDLI 69 (312)
T ss_pred HHHHHHHHhchHHHHHHHHHHHHH
Confidence 356777777776665444444333
No 27
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=64.61 E-value=28 Score=30.66 Aligned_cols=18 Identities=22% Similarity=0.268 Sum_probs=10.7
Q ss_pred chhHHHHHHhhhHHHHHH
Q 024843 152 FWPYLCGSVAGMVPEAFI 169 (261)
Q Consensus 152 ~~~f~~~t~lG~~p~~~l 169 (261)
+++|+.-..+|.+.+.++
T Consensus 8 ~~~~~~~illg~~iGg~~ 25 (248)
T PF11368_consen 8 ILRFLLLILLGGLIGGFI 25 (248)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 556666666666555554
No 28
>PRK12489 anaerobic C4-dicarboxylate transporter; Reviewed
Probab=63.75 E-value=1.5e+02 Score=28.82 Aligned_cols=30 Identities=13% Similarity=0.317 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024843 197 YNIISFIIAVLTIIAFTVYAKRALKELERG 226 (261)
Q Consensus 197 ~~~v~~~~~vl~~i~~~~~~kr~~~~~~~~ 226 (261)
+..+++..+++..++...+.+|.-||++++
T Consensus 173 il~VgIP~~~ig~l~~~l~~~~~gk~l~~D 202 (443)
T PRK12489 173 ILAVTIPATLIGVLAAALWSLRRGKDLDKD 202 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCccccC
Confidence 344566566666666666666666665544
No 29
>PF02417 Chromate_transp: Chromate transporter; InterPro: IPR003370 This entry represents chromate transporters (CHR) [, ]. These proteins reduce chromate accumulation and are essential for chromate resistance. They are composed of one or two copies of this region. The short-chain CHR proteins form heterodimer transporters which efflux chromate ions from the cytoplasm, while the long chain CHR proteins appear to have arisen from a gene fusion event of two short chain transporters[].; GO: 0015109 chromate transmembrane transporter activity, 0015703 chromate transport
Probab=62.32 E-value=88 Score=25.75 Aligned_cols=55 Identities=16% Similarity=0.208 Sum_probs=37.4
Q ss_pred HHHHHhhccccchhh-hhHHHhhcCCcchhHHHHHHhhhHHHHHHHHHHHHHHHHh
Q 024843 126 RMVALFRVSPFPYTI-FNYAIVVTSMRFWPYLCGSVAGMVPEAFIYIYSGRLIRTL 180 (261)
Q Consensus 126 ~~v~l~Rl~PiP~~l-~n~~aG~~~i~~~~f~~~t~lG~~p~~~l~~~~G~~l~~~ 180 (261)
..+.+++.+|-|... +....|...-.+.-=+.++.--.+|..++...++....+.
T Consensus 45 ~~~al~q~~PGP~~~n~a~~iG~~~~G~~Gai~a~~~~~lP~~l~~~~~~~~~~~~ 100 (169)
T PF02417_consen 45 EGLALAQALPGPIAINLATFIGYRLAGFLGAIVATIGFILPSFLLILLLSPLYSRF 100 (169)
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999766 5555666555555555555555678777777777766654
No 30
>COG2851 CitM H+/citrate symporter [Energy production and conversion]
Probab=61.68 E-value=11 Score=35.66 Aligned_cols=43 Identities=19% Similarity=0.060 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHhchhcCCCCCCCCCCccccccCCCccCC
Q 024843 208 TIIAFTVYAKRALKELERGEANGEETSTSTGSGFEMNKLPLERTK 252 (261)
Q Consensus 208 ~~i~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (261)
.....+++.||.+||+-+.+..+|. .+.-+..|.++-+++|||
T Consensus 189 vl~lA~~lG~kErkRlg~~~~~~~~--~~~~~~~~~~~~~~~rpk 231 (433)
T COG2851 189 VLALAWLLGKKERKRLGVIDLSEEL--EQLVELSEEDQEELKRPK 231 (433)
T ss_pred HHHHHHHhhHHHHHHhhhccCchhh--hhccccCCchhhhhhccH
Confidence 3345577788888888777665541 112223333344488887
No 31
>PF14143 YrhC: YrhC-like protein
Probab=61.23 E-value=59 Score=23.38 Aligned_cols=12 Identities=25% Similarity=0.589 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHH
Q 024843 168 FIYIYSGRLIRT 179 (261)
Q Consensus 168 ~l~~~~G~~l~~ 179 (261)
..+.|+|..+.+
T Consensus 21 s~FlYiG~viP~ 32 (72)
T PF14143_consen 21 STFLYIGTVIPI 32 (72)
T ss_pred HHHHHHHhhCCc
Confidence 346778877643
No 32
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=60.22 E-value=32 Score=22.21 Aligned_cols=18 Identities=39% Similarity=0.300 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHhchhcC
Q 024843 213 TVYAKRALKELERGEANG 230 (261)
Q Consensus 213 ~~~~kr~~~~~~~~~~~~ 230 (261)
..-.|+..++++++++.+
T Consensus 26 ~~~~r~~~~~l~~~~~r~ 43 (46)
T PF04995_consen 26 LRRRRRLRKELKRLEARE 43 (46)
T ss_pred HHHHHHHHHHHHHHHHhH
Confidence 333455555666555544
No 33
>PRK13661 hypothetical protein; Provisional
Probab=58.90 E-value=17 Score=30.82 Aligned_cols=33 Identities=18% Similarity=0.351 Sum_probs=29.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 024843 56 PSGPSMWLAGMIFGYGLGFVIIMVGTTIGMVLP 88 (261)
Q Consensus 56 P~~~l~~~aG~lfG~~~g~~~~~~g~~lG~~i~ 88 (261)
|++....+.|++|||..|++...+|..++..+.
T Consensus 39 ~~~~~i~l~a~lfGp~~G~lvg~ig~~L~dll~ 71 (182)
T PRK13661 39 LAYAFLALFAVLFGPVVGFLVGFIGHALKDFIA 71 (182)
T ss_pred eHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHc
Confidence 567788899999999999999999999998873
No 34
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=57.40 E-value=20 Score=29.40 Aligned_cols=36 Identities=14% Similarity=-0.004 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHhHHHHHHHHHh
Q 024843 60 SMWLAGMIFGYGLGF--VIIMVGTTIGMVLPYWVGLLF 95 (261)
Q Consensus 60 l~~~aG~lfG~~~g~--~~~~~g~~lG~~i~f~igR~~ 95 (261)
+.++.|...|.+.+. ..+.+++++|-.++|++.|+.
T Consensus 87 l~li~ga~l~~~~~~~e~~~~~~~~~g~~~g~~~~r~~ 124 (154)
T PRK10862 87 VGLFLGAALFQLLFGSDLAALCGALLGGVGGFLLARGL 124 (154)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 344445444443332 556677777778888777743
No 35
>PF09335 SNARE_assoc: SNARE associated Golgi protein; InterPro: IPR015414 This is a entry contains SNARE associated Golgi proteins. The yeast member of this family (P36164 from SWISSPROT) localises with the t-SNARE Tlg2 [].
Probab=57.20 E-value=61 Score=24.45 Aligned_cols=43 Identities=21% Similarity=0.321 Sum_probs=25.9
Q ss_pred hhhccccCChHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHHHHHHH
Q 024843 48 ALFPVFLIPSGPSMWLAGMIF-GYGLGFVIIMVGTTIGMVLPYWVG 92 (261)
Q Consensus 48 ~~~p~~~iP~~~l~~~aG~lf-G~~~g~~~~~~g~~lG~~i~f~ig 92 (261)
-+.|. +|.++....+|..= ..+.-+..+.+|...-..+.-++|
T Consensus 78 ~~~P~--~P~~~~~~~ag~~~~~~~~f~~~~~~g~~~~~~~~~~~G 121 (123)
T PF09335_consen 78 RFIPG--LPFDVVNYLAGITRMPFRRFFLASLIGKLPWTILYVLLG 121 (123)
T ss_pred HHHHH--ccHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35564 38888888887742 223334666666666665555444
No 36
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=55.53 E-value=2.1e+02 Score=27.87 Aligned_cols=41 Identities=20% Similarity=0.301 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHhchhcCCCCCCCCCCc
Q 024843 200 ISFIIAVLTIIAFTVYAKR----ALKELERGEANGEETSTSTGSG 240 (261)
Q Consensus 200 v~~~~~vl~~i~~~~~~kr----~~~~~~~~~~~~~~~~~~~~~~ 240 (261)
.++++..++.+......|+ ..++.++++.+.+++.||..|+
T Consensus 457 ~~~~~~~~~~v~~sl~t~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 501 (502)
T PRK15419 457 PGFIFGSIGIVVFSLLGKAPSAAMQKRFAEADAHYHSAPPSRLQE 501 (502)
T ss_pred HHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhhhhhhcc
Confidence 3455555555555555443 3445556666666666665553
No 37
>PRK01637 hypothetical protein; Reviewed
Probab=55.04 E-value=1.3e+02 Score=26.89 Aligned_cols=35 Identities=14% Similarity=0.023 Sum_probs=24.0
Q ss_pred HhhcCCcchhHHHHHHhhhHHHHHHHHHHHHHHHH
Q 024843 145 IVVTSMRFWPYLCGSVAGMVPEAFIYIYSGRLIRT 179 (261)
Q Consensus 145 aG~~~i~~~~f~~~t~lG~~p~~~l~~~~G~~l~~ 179 (261)
.--.+.++++-+.+++++.+-|.+.-...+....+
T Consensus 194 ~P~~k~~~r~~~~Ga~~a~~~w~~~~~~f~~Yv~~ 228 (286)
T PRK01637 194 VPNKKVPFRHALVGALVAALLFELGKKGFALYITT 228 (286)
T ss_pred cCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33467788888888888887777765555555444
No 38
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=52.73 E-value=86 Score=25.73 Aligned_cols=33 Identities=18% Similarity=0.420 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHH
Q 024843 62 WLAGMIFGYGLGF-VIIMVGTTIGMVLPYWVGLL 94 (261)
Q Consensus 62 ~~aG~lfG~~~g~-~~~~~g~~lG~~i~f~igR~ 94 (261)
+++..+++..... .++.+++++|..++|++.|.
T Consensus 90 ~v~~~La~~L~~~e~~~~~~~~lg~~l~fl~~r~ 123 (150)
T COG3086 90 FLGAILAQYLFFSELIVIFGAFLGLALGFLLARR 123 (150)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3344444443333 78899999999999999983
No 39
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=49.66 E-value=1e+02 Score=25.28 Aligned_cols=20 Identities=10% Similarity=-0.049 Sum_probs=10.0
Q ss_pred CCCCCCccccccCCCccCCC
Q 024843 234 STSTGSGFEMNKLPLERTKH 253 (261)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~ 253 (261)
+|++-.+.|.+|=--.||-+
T Consensus 90 kPAgAtt~saGKPvt~rPat 109 (189)
T PF05568_consen 90 KPAGATTGSAGKPVTGRPAT 109 (189)
T ss_pred CCCCCccccCCCccCCCcCC
Confidence 34444445555555556543
No 40
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=49.52 E-value=27 Score=27.70 Aligned_cols=21 Identities=19% Similarity=0.630 Sum_probs=17.1
Q ss_pred HHHHHHHHHhHHHHHHHHHhH
Q 024843 76 IIMVGTTIGMVLPYWVGLLFR 96 (261)
Q Consensus 76 ~~~~g~~lG~~i~f~igR~~~ 96 (261)
++++|.++|.+++|+++|+..
T Consensus 1 y~~i~lvvG~iiG~~~~r~~~ 21 (128)
T PF06295_consen 1 YAIIGLVVGLIIGFLIGRLTS 21 (128)
T ss_pred ChHHHHHHHHHHHHHHHHHhc
Confidence 357888999999999999653
No 41
>TIGR03141 cytochro_ccmD heme exporter protein CcmD. The model for this protein family describes a small, hydrophobic, and only moderately well-conserved protein, tricky to identify accurately for all of these reasons. However, members are found as part of large operons involved in heme export across the inner membrane for assembly of c-type cytochromes in a large number of bacteria. The gray zone between the trusted cutoff (13.0) and noise cutoff (4.75) includes both low-scoring examples and false-positive matches to hydrophobic domains of longer proteins.
Probab=46.02 E-value=79 Score=20.27 Aligned_cols=12 Identities=58% Similarity=0.756 Sum_probs=5.2
Q ss_pred HHHHHHHHhchh
Q 024843 217 KRALKELERGEA 228 (261)
Q Consensus 217 kr~~~~~~~~~~ 228 (261)
|+..+++++.++
T Consensus 31 r~~~~~l~~~~~ 42 (45)
T TIGR03141 31 RRLLRELRRLEA 42 (45)
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 42
>TIGR00937 2A51 chromate transporter, chromate ion transporter (CHR) family. Cutoffs for this model have now been lowered, compared to a previous version, giving the model a scope more similar to that of Pfam model pfam02417. Members of the original, more narrowly defined family score above 500.00 bits.
Probab=45.54 E-value=2.6e+02 Score=26.21 Aligned_cols=55 Identities=13% Similarity=0.027 Sum_probs=36.4
Q ss_pred HHHHHhhccccchhh-hhHHHhhcCCcchhHHHHHHhhhHHHHHHHHHHHHHHHHh
Q 024843 126 RMVALFRVSPFPYTI-FNYAIVVTSMRFWPYLCGSVAGMVPEAFIYIYSGRLIRTL 180 (261)
Q Consensus 126 ~~v~l~Rl~PiP~~l-~n~~aG~~~i~~~~f~~~t~lG~~p~~~l~~~~G~~l~~~ 180 (261)
-.+.+++.+|-|... +....|...-.+.-=+.+++.-.+|..++...++....+.
T Consensus 37 ~~~alaq~~PGP~~~n~a~~iG~~~~G~~Gal~a~~~~~lP~~ili~~l~~~~~~~ 92 (368)
T TIGR00937 37 DLVALAQFLPGPASSQVAIYLGYLLGGIVGAILAGLAFTLPSFLLVVALAWAYVHY 92 (368)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 367789999998655 3445666655666666666555677777766666655543
No 43
>PF12822 DUF3816: Protein of unknown function (DUF3816); InterPro: IPR024529 Energy-coupling factor (ECF) transporters consist of a substrate-specific component and an energy-coupling module []. The substrate-binding component is a small integral membrane protein which captures specific substrates and forms an active transporter in the presence of the energy-coupling AT module. The energy coupling module is composed of an ATPase typical of the ATP binding cassette (ABC) superfamily and a characteristic transmembrane protein. Unlike the ABC transporters, an energy coupling module can be shared between multiple different substrate-binding components. This entry represents the substrate-specific component from a number of different ECF transporters.; PDB: 3P5N_A.
Probab=45.15 E-value=21 Score=29.10 Aligned_cols=32 Identities=16% Similarity=0.293 Sum_probs=22.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 024843 56 PSGPSMWLAGMIFGYGLGFVIIMVGTTIGMVL 87 (261)
Q Consensus 56 P~~~l~~~aG~lfG~~~g~~~~~~g~~lG~~i 87 (261)
|.....+.+|+++||++|.+...+...++..+
T Consensus 30 ~~~i~~ii~~~l~Gp~~G~~~g~i~~il~~l~ 61 (172)
T PF12822_consen 30 FSFIPIIIAGFLLGPVWGALVGFISDILSFLI 61 (172)
T ss_dssp CCCHHHHHHHTTS-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55567788999999999987777666655544
No 44
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=44.89 E-value=44 Score=22.86 Aligned_cols=16 Identities=13% Similarity=0.301 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHhchh
Q 024843 213 TVYAKRALKELERGEA 228 (261)
Q Consensus 213 ~~~~kr~~~~~~~~~~ 228 (261)
.+-.|+..++.+++-+
T Consensus 43 ~~~~r~~~~~~~k~l~ 58 (68)
T PF06305_consen 43 RLRLRRRIRRLRKELK 58 (68)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344555555555433
No 45
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=44.69 E-value=95 Score=21.95 Aligned_cols=9 Identities=0% Similarity=0.357 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 024843 216 AKRALKELE 224 (261)
Q Consensus 216 ~kr~~~~~~ 224 (261)
.++..++..
T Consensus 29 ~~~~~~~~~ 37 (79)
T PF04277_consen 29 MSKLIRKFA 37 (79)
T ss_pred HHHHHHhhc
Confidence 344434433
No 46
>PF09512 ThiW: Thiamine-precursor transporter protein (ThiW); InterPro: IPR012652 Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved, to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=43.50 E-value=1.7e+02 Score=24.11 Aligned_cols=42 Identities=24% Similarity=0.376 Sum_probs=23.5
Q ss_pred cccCChHHH-HHHHHHHHHHHHHHHHHHHHH-----HHHhHHHHHHHH
Q 024843 52 VFLIPSGPS-MWLAGMIFGYGLGFVIIMVGT-----TIGMVLPYWVGL 93 (261)
Q Consensus 52 ~~~iP~~~l-~~~aG~lfG~~~g~~~~~~g~-----~lG~~i~f~igR 93 (261)
.+.+||+++ .+++|++|-...-...+.+|- .+|+.++|-+.+
T Consensus 66 ~lAfPGsm~GA~laGllyr~~~k~~~a~lGEviGTGiIGal~sypva~ 113 (150)
T PF09512_consen 66 LLAFPGSMFGALLAGLLYRKTKKLWAAALGEVIGTGIIGALLSYPVAK 113 (150)
T ss_pred HHHhccchHHHHHHHHHHHHhCcchHHHHHHHHhhHHHHHHHHHHHHH
Confidence 455688776 667777775433233333333 455566665555
No 47
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=43.27 E-value=2.8e+02 Score=25.83 Aligned_cols=15 Identities=20% Similarity=0.188 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHH
Q 024843 165 PEAFIYIYSGRLIRT 179 (261)
Q Consensus 165 p~~~l~~~~G~~l~~ 179 (261)
..+++.+|+|..++.
T Consensus 117 i~t~il~y~G~~~~~ 131 (356)
T COG4956 117 ILTIILAYFGFQLAD 131 (356)
T ss_pred HHHHHHHHHhhHHhh
Confidence 445667777776543
No 48
>PF12270 Cyt_c_ox_IV: Cytochrome c oxidase subunit IV; InterPro: IPR021050 This family of proteins is found in bacteria. Proteins in this family are approximately 140 amino acids in length. This family is the fourth subunit of the cytochrome c oxidase complex. This subunit does not have a catalytic capacity but instead, is required for assembly and/or stability of the complex []. ; GO: 0004129 cytochrome-c oxidase activity, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=42.51 E-value=1.3e+02 Score=24.33 Aligned_cols=26 Identities=15% Similarity=0.033 Sum_probs=11.4
Q ss_pred CCCCCccccccCCCccCCCCCCCCCC
Q 024843 235 TSTGSGFEMNKLPLERTKHPTSSSFP 260 (261)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (261)
|.|.+|.|.+.-..+.---+..|-.|
T Consensus 66 PED~~daEI~dgAGe~GfFsP~SwWP 91 (137)
T PF12270_consen 66 PEDREDAEIADGAGELGFFSPHSWWP 91 (137)
T ss_pred CccccccccccCCCCcCcCCCccHhH
Confidence 33444555554444444334444333
No 49
>PRK10520 rhtB homoserine/homoserine lactone efflux protein; Provisional
Probab=42.31 E-value=2.1e+02 Score=24.05 Aligned_cols=43 Identities=12% Similarity=0.101 Sum_probs=26.6
Q ss_pred HHHHHhhccccchhhhhHHHhhcC--CcchhHHHHHHhhhHHHHH
Q 024843 126 RMVALFRVSPFPYTIFNYAIVVTS--MRFWPYLCGSVAGMVPEAF 168 (261)
Q Consensus 126 ~~v~l~Rl~PiP~~l~n~~aG~~~--i~~~~f~~~t~lG~~p~~~ 168 (261)
...++.-++|-|..+.....|+.+ -+-..+..+..+|...+..
T Consensus 11 ~~~~~~~~sPGP~~~~v~~~~~~~G~r~~~~~~~G~~~g~~v~~~ 55 (205)
T PRK10520 11 LTSIILSLSPGSGAINTMSTSISHGYRGAVASIAGLQTGLAIHIV 55 (205)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 345677788999888777776654 3344455555555554443
No 50
>PRK00191 tatA twin arginine translocase protein A; Provisional
Probab=41.58 E-value=42 Score=24.86 Aligned_cols=38 Identities=16% Similarity=0.242 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhchhcCCCCCCCCCCccccccCCCccCCCC
Q 024843 215 YAKRALKELERGEANGEETSTSTGSGFEMNKLPLERTKHP 254 (261)
Q Consensus 215 ~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (261)
-.|+.+++.++++...|+..++..+..+.. .+.||.|-
T Consensus 37 ~FK~~~~~~~~d~~~~e~~~~a~~~~~~~~--~~~~~~~~ 74 (84)
T PRK00191 37 IFKSEVKEMSKDDQTPEQQQQQPQQQIAPN--QIEAPQPN 74 (84)
T ss_pred HHHHHHhcccccccchhhhhhhhhhccCcc--cccCCCcc
Confidence 345555555555555544444444443333 34466553
No 51
>PF15102 TMEM154: TMEM154 protein family
Probab=39.81 E-value=10 Score=31.07 Aligned_cols=15 Identities=13% Similarity=0.153 Sum_probs=6.7
Q ss_pred CCCCccccccCCCcc
Q 024843 236 STGSGFEMNKLPLER 250 (261)
Q Consensus 236 ~~~~~~~~~~~~~~~ 250 (261)
+.++..|+++-.++-
T Consensus 98 ~~~qt~e~~~Env~~ 112 (146)
T PF15102_consen 98 SALQTYELGSENVKV 112 (146)
T ss_pred ccccccccCcccccc
Confidence 344455554444333
No 52
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.25 E-value=87 Score=25.17 Aligned_cols=28 Identities=11% Similarity=0.396 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhHHHHH
Q 024843 73 GFVIIMVGTTIGMVLPYWVGLLFRDRIH 100 (261)
Q Consensus 73 g~~~~~~g~~lG~~i~f~igR~~~~~i~ 100 (261)
.+.+..+|-++|-.++|++.|+....++
T Consensus 7 ~W~~a~igLvvGi~IG~li~Rlt~~~~k 34 (138)
T COG3105 7 TWEYALIGLVVGIIIGALIARLTNRKLK 34 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcchhhh
Confidence 3467888899999999999998755443
No 53
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=37.73 E-value=66 Score=27.62 Aligned_cols=21 Identities=29% Similarity=0.370 Sum_probs=14.7
Q ss_pred chhHHHHHHhhhHHHHHHHHH
Q 024843 152 FWPYLCGSVAGMVPEAFIYIY 172 (261)
Q Consensus 152 ~~~f~~~t~lG~~p~~~l~~~ 172 (261)
+|++++++.+.++.|.+++..
T Consensus 161 ~~K~~lv~~~sm~lWi~v~i~ 181 (226)
T COG4858 161 TWKYLLVAVLSMLLWIAVMIA 181 (226)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 455666667788888888744
No 54
>PF06695 Sm_multidrug_ex: Putative small multi-drug export protein; InterPro: IPR009577 This family contains a small number of putative small multi-drug export proteins.
Probab=37.21 E-value=1.4e+02 Score=23.31 Aligned_cols=45 Identities=36% Similarity=0.550 Sum_probs=32.8
Q ss_pred HHHHHHH--HHHHHHHHHHhHHHHHHHHHhHHHHHHHHhhchHHHHH
Q 024843 68 FGYGLGF--VIIMVGTTIGMVLPYWVGLLFRDRIHQWLKRWPQQAAM 112 (261)
Q Consensus 68 fG~~~g~--~~~~~g~~lG~~i~f~igR~~~~~i~~~l~~~~~~~~~ 112 (261)
+|...|. ..+.+-+.+|+++...+--++-+.+.+++++.+..+++
T Consensus 8 ~gi~~Gl~p~~~~~~~~lGN~l~vp~i~~~~~~i~~~l~~~~~~~~~ 54 (121)
T PF06695_consen 8 LGIALGLPPWEAFLLAFLGNILPVPFILLFLDKILKWLKRKPWLKKF 54 (121)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3445554 67888889999988877777777788888876655444
No 55
>COG1238 Predicted membrane protein [Function unknown]
Probab=37.13 E-value=1.4e+02 Score=24.76 Aligned_cols=51 Identities=14% Similarity=0.285 Sum_probs=43.4
Q ss_pred ccccchhhhhHHHhhcCCcchhHHHHHHhhhHHHHHHHHHHHHHHHHhhhh
Q 024843 133 VSPFPYTIFNYAIVVTSMRFWPYLCGSVAGMVPEAFIYIYSGRLIRTLADV 183 (261)
Q Consensus 133 l~PiP~~l~n~~aG~~~i~~~~f~~~t~lG~~p~~~l~~~~G~~l~~~~~~ 183 (261)
+.|+|..++-...-+.+.+.+.+..-+.+|...+.++--++|+.+.+..+.
T Consensus 32 ~lP~~sE~~l~~m~~~~~~~~~~~~vAt~gs~lG~~~~y~lG~~~~~~~~~ 82 (161)
T COG1238 32 LLPVPSEVLLAPMLLLGLNAWILALVATLGSVLGGLVNYALGRFLPEFIAR 82 (161)
T ss_pred hcCCChHHHHHHHHHcCCchHHHHHHHHHHhhHhHHHHHHHHhcchHHHHH
Confidence 558888888887777779999999999999999999999999988876554
No 56
>PF06195 DUF996: Protein of unknown function (DUF996); InterPro: IPR010397 This is a family of uncharacterised bacterial and archaeal proteins.
Probab=36.00 E-value=2.3e+02 Score=22.78 Aligned_cols=33 Identities=12% Similarity=0.136 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcC
Q 024843 198 NIISFIIAVLTIIAFTVYAKRALKELERGEANG 230 (261)
Q Consensus 198 ~~v~~~~~vl~~i~~~~~~kr~~~~~~~~~~~~ 230 (261)
.+.++++.-+..+...++.||..+++.++-..+
T Consensus 77 ~l~~~vi~~v~~Iisa~f~kks~~~l~~~tg~~ 109 (139)
T PF06195_consen 77 FLAGLVILWVLFIISAYFLKKSYDLLAEYTGVD 109 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 345556666666777888899999888765544
No 57
>PRK11404 putative PTS system transporter subunits IIBC; Provisional
Probab=35.97 E-value=4.3e+02 Score=25.90 Aligned_cols=23 Identities=13% Similarity=0.065 Sum_probs=15.2
Q ss_pred hHHHHHHhhhHHHHHHHHHHHHH
Q 024843 154 PYLCGSVAGMVPEAFIYIYSGRL 176 (261)
Q Consensus 154 ~f~~~t~lG~~p~~~l~~~~G~~ 176 (261)
+|+.++.+|....-.+....|-.
T Consensus 400 ~~i~a~~iG~avgGa~~~~~gv~ 422 (482)
T PRK11404 400 PMITANTLAGGITGVLVIAFGIK 422 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCc
Confidence 77777677777666666666643
No 58
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.75 E-value=2e+02 Score=22.50 Aligned_cols=16 Identities=13% Similarity=0.306 Sum_probs=10.3
Q ss_pred hHHHHHHhhhHHHHHH
Q 024843 154 PYLCGSVAGMVPEAFI 169 (261)
Q Consensus 154 ~f~~~t~lG~~p~~~l 169 (261)
.|+.++++|.....++
T Consensus 51 efIsGilVGa~iG~ll 66 (116)
T COG5336 51 EFISGILVGAGIGWLL 66 (116)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5666677776666665
No 59
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=35.26 E-value=1.3e+02 Score=23.76 Aligned_cols=14 Identities=29% Similarity=0.589 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHH
Q 024843 166 EAFIYIYSGRLIRT 179 (261)
Q Consensus 166 ~~~l~~~~G~~l~~ 179 (261)
+-+.|.++|...-.
T Consensus 70 RGlfyif~G~l~~~ 83 (136)
T PF08507_consen 70 RGLFYIFLGTLCLG 83 (136)
T ss_pred HHHHHHHHHHHHHh
Confidence 45566677765433
No 60
>PRK00523 hypothetical protein; Provisional
Probab=35.21 E-value=1.3e+02 Score=21.54 Aligned_cols=26 Identities=15% Similarity=0.093 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024843 201 SFIIAVLTIIAFTVYAKRALKELERG 226 (261)
Q Consensus 201 ~~~~~vl~~i~~~~~~kr~~~~~~~~ 226 (261)
+++..++..++..+.+||.+++.-++
T Consensus 11 ~i~~li~G~~~Gffiark~~~k~l~~ 36 (72)
T PRK00523 11 GIPLLIVGGIIGYFVSKKMFKKQIRE 36 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445556677788887765544
No 61
>PF15420 Abhydrolase_9_N: Alpha/beta-hydrolase family N-terminus
Probab=35.16 E-value=3e+02 Score=23.78 Aligned_cols=79 Identities=16% Similarity=0.257 Sum_probs=40.6
Q ss_pred HhhcCCcchhHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhcC--CCCchHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Q 024843 145 IVVTSMRFWPYLCGSVAGMVPEAFIYIYSGRLIRTLADVKYG--NYHMTTVEIVYNIISFIIAVLTIIAF--TVYAKRAL 220 (261)
Q Consensus 145 aG~~~i~~~~f~~~t~lG~~p~~~l~~~~G~~l~~~~~~~~g--~~~~~~~~~~~~~v~~~~~vl~~i~~--~~~~kr~~ 220 (261)
.|+-..+...|.....++.+ ...+...+|..+....+.... ++.. .......++.++.+++.+.+ -.+.++.+
T Consensus 81 mg~~~~~~~~~~~~~~va~~-~~~~ll~~~r~~~~~~r~l~~~l~r~l--P~~va~~~~~~~v~~l~~~l~~gvl~~~~l 157 (208)
T PF15420_consen 81 MGMPPIGPAHYLLVVLVALL-VFALLLLLGRGLRRLVRWLARRLRRFL--PRRVARVVGVVVVVVLVVALVDGVLVRGAL 157 (208)
T ss_pred hCCCCCChhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcccc--cHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 45555667778887777764 455567788877765444321 1121 12233344444433333333 23456666
Q ss_pred HHHHhc
Q 024843 221 KELERG 226 (261)
Q Consensus 221 ~~~~~~ 226 (261)
+..++.
T Consensus 158 ~~~~~~ 163 (208)
T PF15420_consen 158 RAADRS 163 (208)
T ss_pred HHHHHH
Confidence 655443
No 62
>COG4732 Predicted membrane protein [Function unknown]
Probab=35.05 E-value=70 Score=26.50 Aligned_cols=28 Identities=21% Similarity=0.271 Sum_probs=20.6
Q ss_pred CChH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 024843 55 IPSG-PSMWLAGMIFGYGLGFVIIMVGTT 82 (261)
Q Consensus 55 iP~~-~l~~~aG~lfG~~~g~~~~~~g~~ 82 (261)
.|.+ .+.+++|...||||+...+.+.+.
T Consensus 37 aP~qh~VNvlAgV~~GPwyala~A~~~sl 65 (177)
T COG4732 37 APMQHFVNVLAGVMMGPWYALAMALVTSL 65 (177)
T ss_pred CcHHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 3554 468999999999999866655543
No 63
>PRK01844 hypothetical protein; Provisional
Probab=33.47 E-value=1.4e+02 Score=21.52 Aligned_cols=27 Identities=7% Similarity=0.030 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhch
Q 024843 201 SFIIAVLTIIAFTVYAKRALKELERGE 227 (261)
Q Consensus 201 ~~~~~vl~~i~~~~~~kr~~~~~~~~~ 227 (261)
+++..++..++..+++||.+++.-++.
T Consensus 10 ~I~~li~G~~~Gff~ark~~~k~lk~N 36 (72)
T PRK01844 10 GVVALVAGVALGFFIARKYMMNYLQKN 36 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 333444455566777788777655443
No 64
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=32.42 E-value=15 Score=33.54 Aligned_cols=27 Identities=22% Similarity=0.276 Sum_probs=0.0
Q ss_pred CCCCCCCCccccccCCCccCCCCCCCC
Q 024843 232 ETSTSTGSGFEMNKLPLERTKHPTSSS 258 (261)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (261)
+.+++.+.=..-+|=||.=||+|.+.+
T Consensus 205 ~~~~~~P~IlkeEkPPl~pp~y~~~~~ 231 (290)
T PF05454_consen 205 EPGSKSPVILKEEKPPLPPPEYPNSNM 231 (290)
T ss_dssp ---------------------------
T ss_pred CCCCCCCeeecccCCCCCCCCCCCCCC
Confidence 456777888888898999999986543
No 65
>PF13124 DUF3963: Protein of unknown function (DUF3963)
Probab=32.31 E-value=1.3e+02 Score=18.68 Aligned_cols=17 Identities=6% Similarity=0.137 Sum_probs=14.4
Q ss_pred hhhHHHHHHHHHHHHhh
Q 024843 17 QGLLKVLFPLMQWEATA 33 (261)
Q Consensus 17 ~~~~~~l~~~~~w~~~~ 33 (261)
.+++++.++++.|+++-
T Consensus 7 ~fieryfddiqkwirni 23 (40)
T PF13124_consen 7 AFIERYFDDIQKWIRNI 23 (40)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46788999999999875
No 66
>PF15102 TMEM154: TMEM154 protein family
Probab=31.48 E-value=25 Score=28.76 Aligned_cols=22 Identities=18% Similarity=0.187 Sum_probs=11.0
Q ss_pred hcCCCCCCCCCCccccccCCCc
Q 024843 228 ANGEETSTSTGSGFEMNKLPLE 249 (261)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~ 249 (261)
++.|+....+.-|.|-.|+|.=
T Consensus 94 ~gsq~~~qt~e~~~Env~~PiF 115 (146)
T PF15102_consen 94 QGSQSALQTYELGSENVKVPIF 115 (146)
T ss_pred ccccccccccccCccccccccc
Confidence 3444444445555555565543
No 67
>PF05337 CSF-1: Macrophage colony stimulating factor-1 (CSF-1); InterPro: IPR008001 Colony stimulating factor 1 (CSF-1) is a homodimeric polypeptide growth factor whose primary function is to regulate the survival, proliferation, differentiation, and function of cells of the mononuclear phagocytic lineage. This lineage includes mononuclear phagocytic precursors, blood monocytes, tissue macrophages, osteoclasts, and microglia of the brain, all of which possess cell surface receptors for CSF-1. The protein has also been linked with male fertility [] and mutations in the Csf-1 gene have been found to cause osteopetrosis and failure of tooth eruption [].; GO: 0005125 cytokine activity, 0008083 growth factor activity, 0016021 integral to membrane; PDB: 3EJJ_A.
Probab=31.22 E-value=16 Score=33.00 Aligned_cols=48 Identities=21% Similarity=0.251 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHhchhcCCCCCCCCCCccccccCCC
Q 024843 201 SFIIAVLTIIAFTVYAKRAL--KELERGEANGEETSTSTGSGFEMNKLPL 248 (261)
Q Consensus 201 ~~~~~vl~~i~~~~~~kr~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (261)
+++++.+.+.++.+|.+|.+ ++-|..|...|-..-+-+.-.|..+||+
T Consensus 234 SiILVLLaVGGLLfYr~rrRs~~e~q~~d~~~~~Pe~spLtqdedrqvel 283 (285)
T PF05337_consen 234 SIILVLLAVGGLLFYRRRRRSHREPQTVDSPMEQPEGSPLTQDEDRQVEL 283 (285)
T ss_dssp --------------------------------------------------
T ss_pred chhhhhhhccceeeecccccccccccccCCcccCCCCCCCccCCCccccC
Confidence 44444455556666644443 3344444444444445566677777775
No 68
>PF05552 TM_helix: Conserved TM helix; InterPro: IPR008910 This alignment represents a conserved transmembrane helix as well as some flanking sequence. It is often found in association with a Mechanosensitive (MS) channel IPR006685 from INTERPRO.; PDB: 2VV5_F 2OAU_E.
Probab=31.10 E-value=1.6e+02 Score=19.32 Aligned_cols=25 Identities=24% Similarity=0.513 Sum_probs=11.4
Q ss_pred HHHHhHHHHHHHH----HhHHHHHHHHhh
Q 024843 81 TTIGMVLPYWVGL----LFRDRIHQWLKR 105 (261)
Q Consensus 81 ~~lG~~i~f~igR----~~~~~i~~~l~~ 105 (261)
..+++.+-+.+|+ ..++.++|.+++
T Consensus 17 ~iv~AilIl~vG~~va~~v~~~~~~~l~~ 45 (53)
T PF05552_consen 17 NIVGAILILIVGWWVAKFVRKLVRRLLEK 45 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444 444445554443
No 69
>TIGR00948 2a75 L-lysine exporter.
Probab=30.72 E-value=3e+02 Score=22.45 Aligned_cols=37 Identities=14% Similarity=-0.047 Sum_probs=22.0
Q ss_pred cccchhhhhHHHhhcCCcchhHHHHHHhhhHHHHHHHHHHH
Q 024843 134 SPFPYTIFNYAIVVTSMRFWPYLCGSVAGMVPEAFIYIYSG 174 (261)
Q Consensus 134 ~PiP~~l~n~~aG~~~i~~~~f~~~t~lG~~p~~~l~~~~G 174 (261)
.|-|..+....-++.+-+ .+.+.+|......+++.+.
T Consensus 4 ~pGP~~~~vi~~~~~~~~----g~~~~~G~~~g~~i~~~~~ 40 (177)
T TIGR00948 4 PIGAQNAFVLRQGIRREH----VLLIVALCCICDLVLIAAG 40 (177)
T ss_pred eecchHHHHHHHHHcccc----HHHHHHHHHHHHHHHHHHH
Confidence 467888888877877522 4445555555555544333
No 70
>COG3190 FliO Flagellar biogenesis protein [Cell motility and secretion]
Probab=30.62 E-value=1.3e+02 Score=24.45 Aligned_cols=30 Identities=20% Similarity=0.231 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024843 192 TVEIVYNIISFIIAVLTIIAFTVYAKRALK 221 (261)
Q Consensus 192 ~~~~~~~~v~~~~~vl~~i~~~~~~kr~~~ 221 (261)
.+.+.....++++.+.+++.+.|..||..+
T Consensus 21 ~~~~~~~~gsL~~iL~lil~~~wl~kr~~~ 50 (137)
T COG3190 21 ALELAQMFGSLILILALILFLAWLVKRLGR 50 (137)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344455556666766777778888888885
No 71
>TIGR00937 2A51 chromate transporter, chromate ion transporter (CHR) family. Cutoffs for this model have now been lowered, compared to a previous version, giving the model a scope more similar to that of Pfam model pfam02417. Members of the original, more narrowly defined family score above 500.00 bits.
Probab=30.49 E-value=4.6e+02 Score=24.59 Aligned_cols=66 Identities=23% Similarity=0.304 Sum_probs=38.1
Q ss_pred HHHcCcchh--h-hHHHHHhhccccchhhhhHHHhhcCCcchhHHHHHHhhhHHHHHHHHHHHHHHHHh
Q 024843 115 LAAEGSWLH--Q-FRMVALFRVSPFPYTIFNYAIVVTSMRFWPYLCGSVAGMVPEAFIYIYSGRLIRTL 180 (261)
Q Consensus 115 ~~~~~~~~~--g-~~~v~l~Rl~PiP~~l~n~~aG~~~i~~~~f~~~t~lG~~p~~~l~~~~G~~l~~~ 180 (261)
.+++++|.. . .-.+.+++.+|-|...+....|..--.+.--+.++.--.+|..++...+.....+.
T Consensus 232 ~V~~~~Wlt~~eF~~~~alaq~~PGP~~~~a~~iG~~~~G~~Ga~~A~~g~~lP~~lli~~l~~~~~~~ 300 (368)
T TIGR00937 232 VVDRGNWLTAGQFLDGIALAQITPGPLFITATFIGYLVAGFPGAIAATVAIFLPSFLLVLGVLPYFKKL 300 (368)
T ss_pred HHhccCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555642 2 34677999999987655555554444445455555433456666655555555443
No 72
>PRK15083 PTS system mannitol-specific transporter subunit IICBA; Provisional
Probab=30.39 E-value=89 Score=31.65 Aligned_cols=22 Identities=9% Similarity=0.078 Sum_probs=13.5
Q ss_pred hhHHHHHHhhhHHHHHHHHHHH
Q 024843 153 WPYLCGSVAGMVPEAFIYIYSG 174 (261)
Q Consensus 153 ~~f~~~t~lG~~p~~~l~~~~G 174 (261)
++.++++.+|....-++..+.|
T Consensus 268 kk~~~a~~iGga~Gg~i~g~~~ 289 (639)
T PRK15083 268 PRLILAVILGGMTGVFTLTLLN 289 (639)
T ss_pred cchhHHHHHHHHHHHHHHHHHc
Confidence 5566777777666666544443
No 73
>COG4280 Predicted membrane protein [Function unknown]
Probab=30.17 E-value=1.4e+02 Score=25.99 Aligned_cols=63 Identities=14% Similarity=0.263 Sum_probs=38.0
Q ss_pred cchhHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Q 024843 151 RFWPYLCGSVAGMVPEAFIYIYSGRLIRTLADVKYGNYHMTTVEIVYNIISFIIAVLTIIAFTVYAKRALKELERGEA 228 (261)
Q Consensus 151 ~~~~f~~~t~lG~~p~~~l~~~~G~~l~~~~~~~~g~~~~~~~~~~~~~v~~~~~vl~~i~~~~~~kr~~~~~~~~~~ 228 (261)
+.+.=++++.+|...-..+...+|..+.-. ..++ +-++..+++....+.+.|+..|+....++
T Consensus 32 ~wr~al~ga~lglalvl~l~lvlGk~L~lv--------Pln~-------lqiv~gvLLllFG~rw~Rsavrr~ag~rk 94 (236)
T COG4280 32 KWRLALIGAVLGLALVLILTLVLGKLLYLV--------PLNY-------LQIVSGVLLLLFGYRWIRSAVRRFAGIRK 94 (236)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHccceeee--------echH-------HHHHHHHHHHHHHHHHHHHHHHHHhchhc
Confidence 445556677777766666666666654332 1122 23445566677778888888887765554
No 74
>PF09512 ThiW: Thiamine-precursor transporter protein (ThiW); InterPro: IPR012652 Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved, to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=29.59 E-value=82 Score=25.92 Aligned_cols=28 Identities=11% Similarity=0.180 Sum_probs=20.0
Q ss_pred CChH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 024843 55 IPSG-PSMWLAGMIFGYGLGFVIIMVGTT 82 (261)
Q Consensus 55 iP~~-~l~~~aG~lfG~~~g~~~~~~g~~ 82 (261)
.|.+ .+++.+|.+.|||++...+.+.++
T Consensus 28 ~P~QH~iNviaaVlLGP~ya~~~Af~~sl 56 (150)
T PF09512_consen 28 FPMQHMINVIAAVLLGPWYAVAMAFITSL 56 (150)
T ss_pred ChHHHHHHHHHHHHhchHHHHHHHHHHHH
Confidence 3554 568999999999988765555543
No 75
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.92 E-value=65 Score=25.88 Aligned_cols=31 Identities=16% Similarity=0.383 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024843 195 IVYNIISFIIAVLTIIAFTVYAKRALKELER 225 (261)
Q Consensus 195 ~~~~~v~~~~~vl~~i~~~~~~kr~~~~~~~ 225 (261)
|...++|+++.+++...+.++.++..+.-++
T Consensus 8 W~~a~igLvvGi~IG~li~Rlt~~~~k~q~~ 38 (138)
T COG3105 8 WEYALIGLVVGIIIGALIARLTNRKLKQQQK 38 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcchhhhhHHH
Confidence 3455677777777777778887777776333
No 76
>COG2245 Predicted membrane protein [Function unknown]
Probab=28.71 E-value=3.6e+02 Score=22.80 Aligned_cols=31 Identities=23% Similarity=0.330 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Q 024843 198 NIISFIIAVLTIIAFTVYAKRALKELERGEA 228 (261)
Q Consensus 198 ~~v~~~~~vl~~i~~~~~~kr~~~~~~~~~~ 228 (261)
...++++.-++.+....+.||.++.+++.-.
T Consensus 102 ~Lag~Vi~wIl~Iisayf~kkaleala~~tg 132 (182)
T COG2245 102 FLAGFVILWILYIISAYFQKKALEALAQYTG 132 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3345666666666677777888887776543
No 77
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=28.68 E-value=62 Score=28.93 Aligned_cols=55 Identities=16% Similarity=0.123 Sum_probs=33.8
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHhhhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 024843 158 GSVAGMVPEAFIYIYSGRLIRTLADVKYGNYHMTTVEIVYNIISFIIAVLTIIAFTV 214 (261)
Q Consensus 158 ~t~lG~~p~~~l~~~~G~~l~~~~~~~~g~~~~~~~~~~~~~v~~~~~vl~~i~~~~ 214 (261)
+-.+|.+.|....+..|-..+...-. |.+...+...+++.+|++++++....+..
T Consensus 80 GLglg~liW~s~n~l~Gw~~grfGlF--g~~~~~~~~~~Ln~~G~~l~~~~~~~f~f 134 (254)
T PF07857_consen 80 GLGLGMLIWGSVNCLTGWASGRFGLF--GLDPQVPSSPWLNYIGVALVLVSGIIFSF 134 (254)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhceec--cccccccchhHHHHHHHHHHHHHHHheee
Confidence 44578888888888888776653211 22223344567778887776666555444
No 78
>PF01741 MscL: Large-conductance mechanosensitive channel, MscL; InterPro: IPR001185 Mechanosensitive ion channels (MscL) play a critical role in transducing physical stresses at the cell membrane into an electrochemical response. MscL is a protein which forms a channel organised as a homopentamer, with each subunit containing two transmembrane regions []. Prokaryotes harbor a large-conductance mechanosensitive channel (gene mscL) that opens in response to stretch forces in the membrane lipid bilayer and may participate in the regulation of osmotic pressure changes within the cell [].; GO: 0005216 ion channel activity, 0006810 transport, 0016021 integral to membrane; PDB: 3HZQ_A 2OAR_A.
Probab=28.65 E-value=1.1e+02 Score=24.31 Aligned_cols=15 Identities=20% Similarity=0.448 Sum_probs=7.2
Q ss_pred HHHHHHHHhchhcCC
Q 024843 217 KRALKELERGEANGE 231 (261)
Q Consensus 217 kr~~~~~~~~~~~~~ 231 (261)
=|.++++++++..+|
T Consensus 91 vk~~nk~~~~~~~~~ 105 (128)
T PF01741_consen 91 VKPINKLKKKEEKEE 105 (128)
T ss_dssp HHHHHHCHHTT-S--
T ss_pred HHHHHHHHhhhhccc
Confidence 346677665555543
No 79
>PF01618 MotA_ExbB: MotA/TolQ/ExbB proton channel family MotA family only; InterPro: IPR002898 This family groups together integral membrane proteins that appear to be involved in translocation of proteins across a membrane. These proteins are probably proton channels. MotA is an essential component of the flagellar motor that uses a proton gradient to generate rotational motion in the flagellar []. ExbB is part of the TonB-dependent transduction complex. The TonB complex uses the proton gradient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane.; GO: 0008565 protein transporter activity, 0006810 transport, 0016020 membrane
Probab=28.48 E-value=2.9e+02 Score=21.71 Aligned_cols=10 Identities=50% Similarity=0.889 Sum_probs=5.8
Q ss_pred HHHHHhhhHH
Q 024843 156 LCGSVAGMVP 165 (261)
Q Consensus 156 ~~~t~lG~~p 165 (261)
+++|++|.+.
T Consensus 70 LlGTv~Gmi~ 79 (139)
T PF01618_consen 70 LLGTVIGMIE 79 (139)
T ss_pred HHHHHHHHHH
Confidence 3466666643
No 80
>PF04298 Zn_peptidase_2: Putative neutral zinc metallopeptidase; InterPro: IPR007395 Members of this family of bacterial proteins are described as hypothetical proteins or zinc-dependent proteases. The majority have a HExxH zinc-binding motif characteristic of neutral zinc metallopeptidases, however there is no evidence to support their function as metallopeptidases.
Probab=28.47 E-value=1.1e+02 Score=26.73 Aligned_cols=52 Identities=19% Similarity=0.181 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhchhcCCCC---------CCCCCCccccccCCCccCCCCC
Q 024843 204 IAVLTIIAFTVYAKRALKELERGEANGEET---------STSTGSGFEMNKLPLERTKHPT 255 (261)
Q Consensus 204 ~~vl~~i~~~~~~kr~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~ 255 (261)
..+++..+.-+..|+.++|..+.+....-| +..+.+|.+.+.+|.+.++|=.
T Consensus 9 ~~~~l~~~aq~~vk~~~~kYs~v~~~~g~TGae~Ar~iL~~~gl~~V~Ve~~~G~LtDHYd 69 (222)
T PF04298_consen 9 PALLLSLWAQWWVKSTFKKYSQVRSSSGMTGAEVARHILDRNGLSDVRVERVPGELTDHYD 69 (222)
T ss_pred HHHHHHHHHHHHHHHHHHhhCcCCCCCCCCHHHHHHHHHHHCCCCCeeEEEeCCCCCCCcC
Confidence 344455566677788888877765433322 3456778888888877788743
No 81
>COG2832 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.44 E-value=1.7e+02 Score=23.19 Aligned_cols=20 Identities=30% Similarity=0.702 Sum_probs=16.0
Q ss_pred hhhccccCChHHHHHHHHHHHH
Q 024843 48 ALFPVFLIPSGPSMWLAGMIFG 69 (261)
Q Consensus 48 ~~~p~~~iP~~~l~~~aG~lfG 69 (261)
+++|.+ |.+++.+++...|.
T Consensus 21 ifLPlL--PTTPFlLLaa~cFa 40 (119)
T COG2832 21 IFLPLL--PTTPFLLLAAACFA 40 (119)
T ss_pred hcCccc--CCcHHHHHHHHHHH
Confidence 577774 99999999888775
No 82
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=28.30 E-value=3.4e+02 Score=22.36 Aligned_cols=8 Identities=25% Similarity=0.787 Sum_probs=3.5
Q ss_pred HHHHHHHh
Q 024843 88 PYWVGLLF 95 (261)
Q Consensus 88 ~f~igR~~ 95 (261)
.+++.|++
T Consensus 157 ~~~l~k~~ 164 (181)
T PF08006_consen 157 TFYLTKLF 164 (181)
T ss_pred HHHHHHHH
Confidence 34444433
No 83
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=28.12 E-value=1.5e+02 Score=29.13 Aligned_cols=17 Identities=24% Similarity=0.405 Sum_probs=11.3
Q ss_pred HHHHHHHHHHhHHHHHH
Q 024843 75 VIIMVGTTIGMVLPYWV 91 (261)
Q Consensus 75 ~~~~~g~~lG~~i~f~i 91 (261)
.-+.+|+..|++++|.+
T Consensus 177 a~~~~g~i~ggliA~g~ 193 (495)
T KOG2533|consen 177 ASASLGNIFGGLIAYGV 193 (495)
T ss_pred HhcchhhHHHHHHHHHh
Confidence 34456777777777774
No 84
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=27.89 E-value=76 Score=27.72 Aligned_cols=54 Identities=22% Similarity=0.250 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHhhhhh-cCCC----CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024843 167 AFIYIYSGRLIRTLADVK-YGNY----HMTTVEIVYNIISFIIAVLTIIAFTVYAKRAL 220 (261)
Q Consensus 167 ~~l~~~~G~~l~~~~~~~-~g~~----~~~~~~~~~~~v~~~~~vl~~i~~~~~~kr~~ 220 (261)
++++..+++.+..-.+.. +|+. ..+.....+.+++-+++|+++|++..++|+.+
T Consensus 6 tli~~lv~rs~~tPl~~~Ia~d~~~~~~~d~~~I~iaiVAG~~tVILVI~i~v~vR~CR 64 (221)
T PF08374_consen 6 TLIEELVRRSLETPLDRNIAGDPASSRSKDYVKIMIAIVAGIMTVILVIFIVVLVRYCR 64 (221)
T ss_pred HHHHHHHHhhccCCCcCcccCCCCccccccceeeeeeeecchhhhHHHHHHHHHHHHHh
Confidence 566777777766432222 2221 11233333444444566666667777776444
No 85
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=27.41 E-value=22 Score=31.27 Aligned_cols=59 Identities=15% Similarity=0.135 Sum_probs=29.7
Q ss_pred chhHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024843 152 FWPYLCGSVAGMVPEAFIYIYSGRLIRTLADVKYGNYHMTTVEIVYNIISFIIAVLTIIAFTVYAKR 218 (261)
Q Consensus 152 ~~~f~~~t~lG~~p~~~l~~~~G~~l~~~~~~~~g~~~~~~~~~~~~~v~~~~~vl~~i~~~~~~kr 218 (261)
.+.+.+.|++- +|.+++..+.|.....+... + ..+. +..++.+++++++.++.+++.||
T Consensus 234 m~~LT~~t~if-lPlt~i~g~fGMN~~~~p~~--~----~~~g-~~~~~~~~~~~~~~~~~~~~~kR 292 (292)
T PF01544_consen 234 MKVLTIVTAIF-LPLTFITGIFGMNFKGMPEL--D----WPYG-YFFVIILGLMILVAILLYWWFKR 292 (292)
T ss_dssp HHHHHHHHHHH-HHHHHHTTSTTS-SS---SS--S----SSS--SHHH--HHHHHHHHHHHHCCTTS
T ss_pred HHHHHHHHHHH-HHHHHHHHHhhCCccCCCcc--C----CccH-HHHHHHHHHHHHHHHHHHHheeC
Confidence 45566666666 79899988888877654321 1 1111 12222344555555555555554
No 86
>PF06341 DUF1056: Protein of unknown function (DUF1056); InterPro: IPR009406 This entry is represented by Bacteriophage bIL286, Orf42. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several putative head-tail joining bacteriophage proteins.
Probab=27.18 E-value=1.5e+02 Score=20.80 Aligned_cols=45 Identities=11% Similarity=0.360 Sum_probs=30.4
Q ss_pred hhhhhHHHhhcCCcchhHHHHHHhhhHHHHHHHHHHHHHHHHhhh
Q 024843 138 YTIFNYAIVVTSMRFWPYLCGSVAGMVPEAFIYIYSGRLIRTLAD 182 (261)
Q Consensus 138 ~~l~n~~aG~~~i~~~~f~~~t~lG~~p~~~l~~~~G~~l~~~~~ 182 (261)
++++.+.+|+.-++...|.+....|.+.....++.+|....-+.+
T Consensus 14 ~DIi~Fila~i~i~it~F~~n~~~g~i~i~I~l~l~G~isE~i~~ 58 (63)
T PF06341_consen 14 FDIILFILAMIFINITAFLINQIAGLISIGITLFLAGLISEFISK 58 (63)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 466677777777777777777777777767777777765544433
No 87
>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function.
Probab=26.34 E-value=94 Score=28.21 Aligned_cols=25 Identities=32% Similarity=0.429 Sum_probs=14.0
Q ss_pred HHHHhchhcCCCCCCCCCCccccccCCCcc
Q 024843 221 KELERGEANGEETSTSTGSGFEMNKLPLER 250 (261)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (261)
+|+++=|+..|+ +++.++..|.--|
T Consensus 243 ~k~~eMEr~A~~-----gE~L~~~~VG~sr 267 (278)
T PF06697_consen 243 KKIEEMERRAEE-----GEALQMSWVGGSR 267 (278)
T ss_pred HHHHHHHHhhcc-----CceeeeEEEcccc
Confidence 344444444444 5667777776544
No 88
>PRK10429 melibiose:sodium symporter; Provisional
Probab=26.26 E-value=5.6e+02 Score=24.21 Aligned_cols=11 Identities=9% Similarity=0.117 Sum_probs=5.0
Q ss_pred HHHHHHHHHhc
Q 024843 216 AKRALKELERG 226 (261)
Q Consensus 216 ~kr~~~~~~~~ 226 (261)
.|++.++++++
T Consensus 436 ~~~~~~~i~~~ 446 (473)
T PRK10429 436 NGDFLRRIQIH 446 (473)
T ss_pred CHHHHHHHHHH
Confidence 34445544443
No 89
>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine. A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane
Probab=25.71 E-value=3.5e+02 Score=22.11 Aligned_cols=87 Identities=8% Similarity=0.109 Sum_probs=0.0
Q ss_pred ccccchhhhhHHHhhcCC--cchhHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhcCCCCchHHHHHHHHHHHHHHHHHHH
Q 024843 133 VSPFPYTIFNYAIVVTSM--RFWPYLCGSVAGMVPEAFIYIYSGRLIRTLADVKYGNYHMTTVEIVYNIISFIIAVLTII 210 (261)
Q Consensus 133 l~PiP~~l~n~~aG~~~i--~~~~f~~~t~lG~~p~~~l~~~~G~~l~~~~~~~~g~~~~~~~~~~~~~v~~~~~vl~~i 210 (261)
+.|-|.++...-.|+.+= +-.....+..+|..++..+..+.-..+.+ ..+.....+-++.++.+..
T Consensus 5 ~~PGP~~~~~i~~~~~~G~~~~~~~~~G~~~~~~i~~~~~~~g~~~l~~------------~~~~~~~~l~~~G~~~L~~ 72 (191)
T PF01810_consen 5 IPPGPVNLLVISNGLRKGFKAGLPVALGAALGDLIYILLAVFGLSALLK------------SSPWLFMILKLLGALYLLY 72 (191)
T ss_pred ecCCHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------hChHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhchhcCC
Q 024843 211 AFTVYAKRALKELERGEANGE 231 (261)
Q Consensus 211 ~~~~~~kr~~~~~~~~~~~~~ 231 (261)
..+...|+..+..++++++.+
T Consensus 73 lg~~~~~~~~~~~~~~~~~~~ 93 (191)
T PF01810_consen 73 LGYKLLRSKFSSKSSTQSEAK 93 (191)
T ss_pred HHHHHHhcccCcchhhhhhhc
No 90
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=25.65 E-value=1.3e+02 Score=27.68 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 024843 197 YNIISFIIAVLTIIAFTVYAKRAL 220 (261)
Q Consensus 197 ~~~v~~~~~vl~~i~~~~~~kr~~ 220 (261)
..++.+++.|++++..+.+.|.++
T Consensus 260 aSiiaIliIVLIMvIIYLILRYRR 283 (299)
T PF02009_consen 260 ASIIAILIIVLIMVIIYLILRYRR 283 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444
No 91
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=24.73 E-value=1.7e+02 Score=22.63 Aligned_cols=12 Identities=25% Similarity=0.238 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 024843 210 IAFTVYAKRALK 221 (261)
Q Consensus 210 i~~~~~~kr~~~ 221 (261)
+++.+...|..+
T Consensus 15 l~asl~~wr~~~ 26 (107)
T PF15330_consen 15 LAASLLAWRMKQ 26 (107)
T ss_pred HHHHHHHHHHHh
Confidence 333344444333
No 92
>PF03606 DcuC: C4-dicarboxylate anaerobic carrier; InterPro: IPR018385 Escherichia coli contains four different secondary carriers (DcuA, DcuB, DcuC, and DctA) for C4-dicarboxylates [, , , ] DcuA is used for aerobic growth on C4-dicarboxylates [, ], whereas the Dcu carriers (encoded by the dcuA, dcuB, and dcuC genes) are used under anaerobic conditions and form a distinct family of carriers [, , , , , ]. Each of the Dcu carriers is able to catalyze the uptake, antiport, and possibly also efflux of C4-dicarboxylates. DcuB is the major C4-dicarboxylate carrier for fumarate respiration with high fumarate-succinate exchange activity. It is synthesized only in the absence of oxygen and nitrate and in the presence of C4-dicarboxylates [, , , ]. DcuA is expressed constitutively in aerobic and anaerobic growth and can substitute for DcuB [, ]. These proteins are members of the C4-dicarboxylate Uptake C (DcuC) family. DcuC has 12 GES predicted transmembrane regions, is induced only under anaerobic conditions, and is not repressed by glucose. DcuC may therefore function as a succinate efflux system during anaerobic glucose fermentation. However, when overexpressed, it can replace either DcuA or DcuB in catalyzing fumarate-succinate exchange and fumarate uptake [, ]. DcuC shows the same transport modes as DcuA and DcuB (exchange, uptake, and presumably efflux of C4-dicarboxylates) [].; GO: 0016021 integral to membrane
Probab=24.65 E-value=97 Score=30.03 Aligned_cols=21 Identities=24% Similarity=0.407 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 024843 203 IIAVLTIIAFTVYAKRALKEL 223 (261)
Q Consensus 203 ~~~vl~~i~~~~~~kr~~~~~ 223 (261)
+..++...+..+|.||..++-
T Consensus 206 i~~~i~~~~~~~ya~kv~~~p 226 (465)
T PF03606_consen 206 IFTLIAIAYVHRYAQKVKKDP 226 (465)
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 345556666777777776665
No 93
>PRK03818 putative transporter; Validated
Probab=24.45 E-value=7.1e+02 Score=24.77 Aligned_cols=29 Identities=10% Similarity=0.095 Sum_probs=13.9
Q ss_pred hcCCcchhHHHHHHhhhHHHHHHHHHHHHH
Q 024843 147 VTSMRFWPYLCGSVAGMVPEAFIYIYSGRL 176 (261)
Q Consensus 147 ~~~i~~~~f~~~t~lG~~p~~~l~~~~G~~ 176 (261)
+.+++.. ...+.+.|..-.+-.....-+.
T Consensus 114 ~~~~~~~-~~~G~~aGa~T~tp~l~aa~~~ 142 (552)
T PRK03818 114 LFGIPLP-VMLGIFSGAVTNTPALGAGQQI 142 (552)
T ss_pred HhCCCHH-HHHHHhhccccccHHHHHHHHH
Confidence 3455533 5555555655444444333333
No 94
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=24.40 E-value=51 Score=26.23 Aligned_cols=23 Identities=17% Similarity=0.313 Sum_probs=11.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHH
Q 024843 190 MTTVEIVYNIISFIIAVLTIIAF 212 (261)
Q Consensus 190 ~~~~~~~~~~v~~~~~vl~~i~~ 212 (261)
.++|.+.+..++.++.++.++.+
T Consensus 32 ~tpWNysiL~Ls~vvlvi~~~LL 54 (125)
T PF15048_consen 32 ATPWNYSILALSFVVLVISFFLL 54 (125)
T ss_pred CCCcchHHHHHHHHHHHHHHHHH
Confidence 45677666555544444433333
No 95
>PRK11026 ftsX cell division ABC transporter subunit FtsX; Provisional
Probab=24.35 E-value=4.1e+02 Score=24.22 Aligned_cols=20 Identities=10% Similarity=0.160 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 024843 204 IAVLTIIAFTVYAKRALKEL 223 (261)
Q Consensus 204 ~~vl~~i~~~~~~kr~~~~~ 223 (261)
.+++..++.+.-.+|.++++
T Consensus 287 ~~~ig~l~s~~s~~r~L~~~ 306 (309)
T PRK11026 287 CSMIGWVAAWLATVQHLRRF 306 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34445556666788888887
No 96
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms]
Probab=24.18 E-value=3.2e+02 Score=27.03 Aligned_cols=19 Identities=16% Similarity=0.412 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 024843 61 MWLAGMIFGYGLGFVIIMV 79 (261)
Q Consensus 61 ~~~aG~lfG~~~g~~~~~~ 79 (261)
++.+|.+.||+.|+++..+
T Consensus 74 v~~gGllgGP~Vg~~vGl~ 92 (557)
T COG3275 74 VVMGGLLGGPVVGIIVGLT 92 (557)
T ss_pred HHhcccccCChhhhhhhhh
Confidence 3456778888877654433
No 97
>PRK11677 hypothetical protein; Provisional
Probab=23.92 E-value=79 Score=25.49 Aligned_cols=24 Identities=13% Similarity=0.382 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 024843 196 VYNIISFIIAVLTIIAFTVYAKRA 219 (261)
Q Consensus 196 ~~~~v~~~~~vl~~i~~~~~~kr~ 219 (261)
.+.++++++.+++...+.++..+.
T Consensus 4 ~~a~i~livG~iiG~~~~R~~~~~ 27 (134)
T PRK11677 4 EYALIGLVVGIIIGAVAMRFGNRK 27 (134)
T ss_pred HHHHHHHHHHHHHHHHHHhhccch
Confidence 344456665555555555554433
No 98
>PF14163 SieB: Superinfection exclusion protein B
Probab=23.46 E-value=3.6e+02 Score=21.55 Aligned_cols=36 Identities=19% Similarity=0.399 Sum_probs=17.5
Q ss_pred CChHHHHHHHH----HHHHHHHHH-HHHHHHHHHHhHHHHH
Q 024843 55 IPSGPSMWLAG----MIFGYGLGF-VIIMVGTTIGMVLPYW 90 (261)
Q Consensus 55 iP~~~l~~~aG----~lfG~~~g~-~~~~~g~~lG~~i~f~ 90 (261)
.|.+.+..+.= -.+++|.|. ++..++..+...+.+.
T Consensus 15 ~P~~~~~~l~l~~~~~~y~~~i~~~fl~s~s~li~~~~~~~ 55 (151)
T PF14163_consen 15 LPESLLEWLNLDKFEIKYQPWIGLIFLFSVSYLIAQLLSFI 55 (151)
T ss_pred CCHHHHHHhCcchHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 46665543322 345667666 3444444444444443
No 99
>PRK13727 conjugal transfer pilin chaperone TraQ; Provisional
Probab=23.03 E-value=2.6e+02 Score=20.27 Aligned_cols=31 Identities=19% Similarity=0.224 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchhcCCC
Q 024843 202 FIIAVLTIIAFTVYAKRALKELERGEANGEE 232 (261)
Q Consensus 202 ~~~~vl~~i~~~~~~kr~~~~~~~~~~~~~~ 232 (261)
++...++..+.+.+....+.+..++++.+++
T Consensus 45 iiav~lVl~GgYRilda~iarv~~eer~~~~ 75 (80)
T PRK13727 45 LIAAILVLFGAYRVLDAWIARVSREEREALE 75 (80)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHhc
Confidence 3344455667777777778777777766654
No 100
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=22.89 E-value=1.3e+02 Score=25.60 Aligned_cols=24 Identities=29% Similarity=0.529 Sum_probs=13.3
Q ss_pred chhHHHHHHhhhHHHHHHHHHHHH
Q 024843 152 FWPYLCGSVAGMVPEAFIYIYSGR 175 (261)
Q Consensus 152 ~~~f~~~t~lG~~p~~~l~~~~G~ 175 (261)
++++++.++++.+.|..+++...-
T Consensus 146 ~~k~~~~~~~~~~~w~~~~~~~~~ 169 (206)
T PF06570_consen 146 WWKYILISVLAMVLWIVIFVLTSF 169 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455666677666655444
No 101
>TIGR02185 Trep_Strep conserved hypothetical integral membrane protein TIGR02185. This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C-terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae R6.
Probab=22.70 E-value=2.5e+02 Score=23.67 Aligned_cols=28 Identities=21% Similarity=0.256 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024843 198 NIISFIIAVLTIIAFTVYAKRALKELER 225 (261)
Q Consensus 198 ~~v~~~~~vl~~i~~~~~~kr~~~~~~~ 225 (261)
..+.++.+++..+....+.||.+||.-+
T Consensus 161 ~~~~~~~t~v~~~iG~~iG~kllkKHF~ 188 (189)
T TIGR02185 161 AVIMIVLTAVAGIAGVLIGKKLLKKHFE 188 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3455566677777778889999988643
No 102
>COG2851 CitM H+/citrate symporter [Energy production and conversion]
Probab=22.70 E-value=1.1e+02 Score=29.20 Aligned_cols=47 Identities=13% Similarity=0.150 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcCCCCCCCCCCccccc
Q 024843 198 NIISFIIAVLTIIAFTVYAKRALKELERGEANGEETSTSTGSGFEMN 244 (261)
Q Consensus 198 ~~v~~~~~vl~~i~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (261)
.++|++..+.+...+-.--||++.+++.++..+|.++.++++..|..
T Consensus 182 ~i~Gl~~vl~lA~~lG~kErkRlg~~~~~~~~~~~~~~~~~~~~~~~ 228 (433)
T COG2851 182 QIIGLVLVLALAWLLGKKERKRLGVIDLSEELEQLVELSEEDQEELK 228 (433)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHhhhccCchhhhhccccCCchhhhhh
Confidence 35678777888888888889999999988877777777777766543
No 103
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=22.54 E-value=2.5e+02 Score=21.53 Aligned_cols=9 Identities=11% Similarity=0.641 Sum_probs=4.1
Q ss_pred HHHHHHHHH
Q 024843 199 IISFIIAVL 207 (261)
Q Consensus 199 ~v~~~~~vl 207 (261)
.+|++++++
T Consensus 20 LVGVv~~al 28 (102)
T PF15176_consen 20 LVGVVVTAL 28 (102)
T ss_pred HHHHHHHHH
Confidence 345544444
No 104
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=22.25 E-value=6.3e+02 Score=23.33 Aligned_cols=15 Identities=13% Similarity=0.332 Sum_probs=9.9
Q ss_pred ChHHHHHHHHHHHHH
Q 024843 56 PSGPSMWLAGMIFGY 70 (261)
Q Consensus 56 P~~~l~~~aG~lfG~ 70 (261)
|...+....|+.+..
T Consensus 59 p~pl~~~~~g~~L~~ 73 (340)
T PF12794_consen 59 PLPLLLLAIGYLLQF 73 (340)
T ss_pred HHHHHHHHHHHHHHh
Confidence 444777777877763
No 105
>PRK07946 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=21.82 E-value=3.5e+02 Score=22.60 Aligned_cols=9 Identities=11% Similarity=0.423 Sum_probs=4.1
Q ss_pred HHHHHHHHH
Q 024843 167 AFIYIYSGR 175 (261)
Q Consensus 167 ~~l~~~~G~ 175 (261)
.++++.+|.
T Consensus 42 nLlii~~G~ 50 (163)
T PRK07946 42 NLLILTAGG 50 (163)
T ss_pred HHHHHHHhc
Confidence 334455554
No 106
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=21.59 E-value=2.1e+02 Score=19.77 Aligned_cols=9 Identities=0% Similarity=-0.282 Sum_probs=4.2
Q ss_pred CCccccccC
Q 024843 238 GSGFEMNKL 246 (261)
Q Consensus 238 ~~~~~~~~~ 246 (261)
.+|.|+.+.
T Consensus 49 ~Dd~q~~~~ 57 (60)
T COG4736 49 NDDAQDAAG 57 (60)
T ss_pred Ccchhhhhc
Confidence 445554443
No 107
>COG4854 Predicted membrane protein [Function unknown]
Probab=21.41 E-value=2.2e+02 Score=22.34 Aligned_cols=39 Identities=13% Similarity=0.127 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHhchhcCCCCCCCCCCccccccC
Q 024843 208 TIIAFTVYAKRALKELERGEANGEETSTSTGSGFEMNKL 246 (261)
Q Consensus 208 ~~i~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (261)
....+..+.||+.+++.++|+.-+.+.-|+--+.|.-.+
T Consensus 40 ag~~~l~l~k~Rv~~vvEDER~lrvse~aSr~TiqV~~i 78 (126)
T COG4854 40 AGAALLSLVKRRVDEVVEDERTLRVSERASRRTIQVFSI 78 (126)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhhhheeEEEEEe
Confidence 334455566888888877776555555555556665443
No 108
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=21.35 E-value=1.1e+02 Score=26.34 Aligned_cols=44 Identities=7% Similarity=-0.148 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhchhcCCCC-CCCCCCccccccCC
Q 024843 204 IAVLTIIAFTVYAKRALKELERGEANGEET-STSTGSGFEMNKLP 247 (261)
Q Consensus 204 ~~vl~~i~~~~~~kr~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 247 (261)
+.+++.++.++.-+|+..+...++..+|.. .-.+-+||.+-.|.
T Consensus 113 Lla~~~~~~Y~~~~Rrs~~~~~~rl~Ee~~~vEng~h~n~~l~v~ 157 (202)
T PF06365_consen 113 LLAILLGAGYCCHQRRSWSKKGQRLGEELYTVENGYHDNPTLSVA 157 (202)
T ss_pred HHHHHHHHHHHhhhhccCCcchhhhccCceecccCccCCcccccC
Confidence 333333343444455554443333333332 22333566666555
No 109
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=21.22 E-value=3.9e+02 Score=26.23 Aligned_cols=14 Identities=29% Similarity=0.321 Sum_probs=11.4
Q ss_pred hhhHHHHHHHHHHH
Q 024843 2 LRKTVNMLGWLYLM 15 (261)
Q Consensus 2 ~~~~~~~~~~~~~~ 15 (261)
-|||++++++.++-
T Consensus 41 ~rRW~vLl~~slL~ 54 (480)
T KOG2563|consen 41 PRRWVVLLAFSLLN 54 (480)
T ss_pred hhHhHHHHHHHHHH
Confidence 38999999998664
No 110
>PF04367 DUF502: Protein of unknown function (DUF502); InterPro: IPR007462 This entry contains proteins that are predicted to be integral membrane proteins.
Probab=21.14 E-value=3.5e+02 Score=20.47 Aligned_cols=30 Identities=20% Similarity=0.360 Sum_probs=19.4
Q ss_pred HHHHHHhHHHHHHHHHhHHHHHHHHhhchH
Q 024843 79 VGTTIGMVLPYWVGLLFRDRIHQWLKRWPQ 108 (261)
Q Consensus 79 ~g~~lG~~i~f~igR~~~~~i~~~l~~~~~ 108 (261)
+-..+|-+...+++|.+-+++++.+.+-|-
T Consensus 7 ~i~~iG~l~~~~~g~~l~~~~e~ll~riP~ 36 (108)
T PF04367_consen 7 LIFLIGLLARNYFGKWLLNWLERLLQRIPL 36 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCc
Confidence 344556666677777666677777776664
No 111
>PF15179 Myc_target_1: Myc target protein 1
Probab=21.10 E-value=2.3e+02 Score=24.17 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 024843 197 YNIISFIIAVLTIIAFTVYAKRA 219 (261)
Q Consensus 197 ~~~v~~~~~vl~~i~~~~~~kr~ 219 (261)
-+++|+++..++.+.+.|+.||+
T Consensus 28 Sm~iGLviG~li~~LltwlSRRR 50 (197)
T PF15179_consen 28 SMAIGLVIGALIWALLTWLSRRR 50 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 34567777777777777776654
No 112
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=21.08 E-value=1.2e+02 Score=19.31 Aligned_cols=6 Identities=0% Similarity=0.186 Sum_probs=2.2
Q ss_pred HHHHhc
Q 024843 221 KELERG 226 (261)
Q Consensus 221 ~~~~~~ 226 (261)
||++++
T Consensus 31 RKw~aR 36 (43)
T PF08114_consen 31 RKWQAR 36 (43)
T ss_pred HHHHHH
Confidence 333333
No 113
>PRK01821 hypothetical protein; Provisional
Probab=20.03 E-value=4.6e+02 Score=20.97 Aligned_cols=6 Identities=33% Similarity=1.082 Sum_probs=2.5
Q ss_pred ccCChH
Q 024843 53 FLIPSG 58 (261)
Q Consensus 53 ~~iP~~ 58 (261)
+++|..
T Consensus 74 fFVPa~ 79 (133)
T PRK01821 74 LFVPIG 79 (133)
T ss_pred HHhhhH
Confidence 344533
Done!