Query 024843
Match_columns 261
No_of_seqs 209 out of 1908
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 15:22:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024843.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024843hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2knc_B Integrin beta-3; transm 55.3 19 0.00064 25.3 4.6 14 217-230 41-54 (79)
2 1pi7_A VPU protein, U ORF prot 51.0 37 0.0013 20.2 5.0 28 199-226 8-35 (36)
3 4ezc_A UREA transporter 1; mem 41.1 75 0.0026 28.9 7.5 70 21-92 35-106 (384)
4 3p5n_A RIBU, riboflavin uptake 34.0 31 0.0011 27.9 3.4 30 58-87 48-77 (189)
5 2jwa_A Receptor tyrosine-prote 29.5 1E+02 0.0035 19.0 5.2 25 195-219 14-38 (44)
6 1s4x_A Integrin beta-3; cell a 26.0 62 0.0021 21.9 3.2 33 199-231 11-43 (67)
7 4djk_A Probable glutamate/gamm 24.2 50 0.0017 30.0 3.4 8 247-254 496-503 (511)
8 2hfr_A Fowlicidin-3, cathelici 20.1 48 0.0017 17.9 1.4 17 132-148 2-19 (27)
9 2k9j_B Integrin beta-3; transm 19.6 1.6E+02 0.0056 17.8 5.2 42 187-228 1-42 (43)
10 2lbg_A Major prion protein; co 16.4 1.5E+02 0.0052 16.2 2.9 17 77-93 7-23 (27)
No 1
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=55.25 E-value=19 Score=25.27 Aligned_cols=14 Identities=14% Similarity=0.406 Sum_probs=9.1
Q ss_pred HHHHHHHHhchhcC
Q 024843 217 KRALKELERGEANG 230 (261)
Q Consensus 217 kr~~~~~~~~~~~~ 230 (261)
||..+|.++|++++
T Consensus 41 rrE~~kFEkE~~~~ 54 (79)
T 2knc_B 41 RKEFAKFEEERARA 54 (79)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 66777777666544
No 2
>1pi7_A VPU protein, U ORF protein; alpha helix, viral protein; NMR {Human immunodeficiency virus 1} SCOP: j.35.1.1 PDB: 1pi8_A 1pje_A 2gof_A 2goh_A 2jpx_A
Probab=51.03 E-value=37 Score=20.18 Aligned_cols=28 Identities=11% Similarity=0.166 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024843 199 IISFIIAVLTIIAFTVYAKRALKELERG 226 (261)
Q Consensus 199 ~v~~~~~vl~~i~~~~~~kr~~~~~~~~ 226 (261)
+++++++.++.+.++...-+..+|..++
T Consensus 8 ivalivalIiaIVVWtiv~ieYrk~~kQ 35 (36)
T 1pi7_A 8 IVALVVAIIIAIVVWSIVIIEGRGGKKK 35 (36)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4555555555555555555666665543
No 3
>4ezc_A UREA transporter 1; membrane protein, channel, SLC14, structural genomics, PSI-biology, NEW YORK consortium on membrane PROT structure, nycomps; HET: BGC BOG SPL; 2.36A {Bos taurus} PDB: 4ezd_A*
Probab=41.11 E-value=75 Score=28.89 Aligned_cols=70 Identities=13% Similarity=0.135 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHhhhccccCCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 024843 21 KVLFPLMQWEATAFGRPVLAIVLIASLALFPVFLIPS--GPSMWLAGMIFGYGLGFVIIMVGTTIGMVLPYWVG 92 (261)
Q Consensus 21 ~~l~~~~~w~~~~~g~~~~~i~~~~~~~~~p~~~iP~--~~l~~~aG~lfG~~~g~~~~~~g~~lG~~i~f~ig 92 (261)
..++++-+|+++++. ..-.+-.+.-.+-++++.+. +-+.++.|..++.++..+.+.+|+++|...+.+++
T Consensus 35 g~~~~~~~~~~~~~~--~~~~i~~~LrG~gQV~f~~n~lsGlliLigl~i~sp~~al~allG~~vstltA~llg 106 (384)
T 4ezc_A 35 GDMKEFANWLKDKPQ--ALQFVDWVLRGISQVVFVSNPISGILILVGLLVQNPWCALNGCVGTVVSTLTALLLS 106 (384)
T ss_dssp TTCHHHHHHHHTSCH--HHHHHHHHHHHHHGGGTCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CchHHHHHHHhcCCc--HHHHHHHHhcCceEEEecCCcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhC
Confidence 356778899888742 22222222223444555544 44667788887776666777777777777776555
No 4
>3p5n_A RIBU, riboflavin uptake protein; transporter, alpha-helical bundle, transport protein; HET: RBF; 3.60A {Staphylococcus aureus}
Probab=33.96 E-value=31 Score=27.87 Aligned_cols=30 Identities=20% Similarity=0.368 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 024843 58 GPSMWLAGMIFGYGLGFVIIMVGTTIGMVL 87 (261)
Q Consensus 58 ~~l~~~aG~lfG~~~g~~~~~~g~~lG~~i 87 (261)
+..++++|+++||+.|.+...+...++..+
T Consensus 48 ~i~i~l~~~~~Gp~~g~~~~~l~~ll~~l~ 77 (189)
T 3p5n_A 48 DVPSLLATFTFGPVAGIIVALVKNLLNYLF 77 (189)
T ss_dssp GHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 457789999999999998888887777665
No 5
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=29.45 E-value=1e+02 Score=19.03 Aligned_cols=25 Identities=20% Similarity=0.485 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024843 195 IVYNIISFIIAVLTIIAFTVYAKRA 219 (261)
Q Consensus 195 ~~~~~v~~~~~vl~~i~~~~~~kr~ 219 (261)
.+..++|+++.+++.+.+.+|.||+
T Consensus 14 Ia~~vVGvll~vi~~l~~~~~~RRR 38 (44)
T 2jwa_A 14 IISAVVGILLVVVLGVVFGILIKRR 38 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhheehh
Confidence 3444556544444445555555543
No 6
>1s4x_A Integrin beta-3; cell adhesion; NMR {Homo sapiens} SCOP: j.60.1.1 PDB: 2ljd_A* 2lje_A* 2ljf_A*
Probab=25.99 E-value=62 Score=21.89 Aligned_cols=33 Identities=9% Similarity=0.058 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchhcCC
Q 024843 199 IISFIIAVLTIIAFTVYAKRALKELERGEANGE 231 (261)
Q Consensus 199 ~v~~~~~vl~~i~~~~~~kr~~~~~~~~~~~~~ 231 (261)
++|+++.++--+...+.=||..+|.++++..+.
T Consensus 11 liGl~lLliwKll~~i~DrrEyakFE~Er~~ak 43 (67)
T 1s4x_A 11 SGLVPRGSHMKLLITIHDRKEFAKFEEERARAK 43 (67)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcc
Confidence 356555444445567777889999888887553
No 7
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=24.16 E-value=50 Score=30.04 Aligned_cols=8 Identities=38% Similarity=0.580 Sum_probs=2.9
Q ss_pred CCccCCCC
Q 024843 247 PLERTKHP 254 (261)
Q Consensus 247 ~~~~~~~~ 254 (261)
|-+|+||.
T Consensus 496 ~~~~~~~~ 503 (511)
T 4djk_A 496 PRARSPHY 503 (511)
T ss_dssp TTTCCC--
T ss_pred ccccCCee
Confidence 33455553
No 8
>2hfr_A Fowlicidin-3, cathelicidin; alpha helix, antimicrobial protein; NMR {Synthetic}
Probab=20.14 E-value=48 Score=17.89 Aligned_cols=17 Identities=29% Similarity=0.364 Sum_probs=12.5
Q ss_pred hccc-cchhhhhHHHhhc
Q 024843 132 RVSP-FPYTIFNYAIVVT 148 (261)
Q Consensus 132 Rl~P-iP~~l~n~~aG~~ 148 (261)
||.| +|-.+...++|+.
T Consensus 2 RF~P~vpvaintvaagin 19 (27)
T 2hfr_A 2 RFWPLVPVAINTVAAGIN 19 (27)
T ss_dssp CSCSSSSSHHHHHHHHHT
T ss_pred CccccCcceEEEeehhhh
Confidence 7888 6877777777764
No 9
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=19.63 E-value=1.6e+02 Score=17.84 Aligned_cols=42 Identities=14% Similarity=0.088 Sum_probs=0.0
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Q 024843 187 NYHMTTVEIVYNIISFIIAVLTIIAFTVYAKRALKELERGEA 228 (261)
Q Consensus 187 ~~~~~~~~~~~~~v~~~~~vl~~i~~~~~~kr~~~~~~~~~~ 228 (261)
.+-.++......+.|.+.+++++..+.....|.+..+++++.
T Consensus 1 ~~Cp~~~n~~~Iv~gvi~~ivliGl~lLliwk~~~~i~DrrE 42 (43)
T 2k9j_B 1 PESPKGPDILVVLLSVMGAILLIGLAALLIWKLLITIHDRKE 42 (43)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCEeehHHHHHHHHHHHHHHHHHHHHHHHheehhhc
No 10
>2lbg_A Major prion protein; conserved hydrophobic region, membrane protei; NMR {Homo sapiens}
Probab=16.37 E-value=1.5e+02 Score=16.23 Aligned_cols=17 Identities=24% Similarity=0.411 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHHH
Q 024843 77 IMVGTTIGMVLPYWVGL 93 (261)
Q Consensus 77 ~~~g~~lG~~i~f~igR 93 (261)
...|.++|++-+|++|+
T Consensus 7 ~AAGaVvGglGgy~lg~ 23 (27)
T 2lbg_A 7 AAAGAVVGGLGGYMLGS 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhHHHHHHH
Done!