Query 024843
Match_columns 261
No_of_seqs 209 out of 1908
Neff 7.2
Searched_HMMs 13730
Date Mon Mar 25 15:22:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024843.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/024843hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2vv5a3 f.34.1.1 (A:27-112) Me 27.5 43 0.0031 21.4 4.6 20 86-105 13-32 (86)
2 d1q90a3 f.23.23.1 (A:248-292) 13.9 1.2E+02 0.0084 17.3 5.4 29 200-228 9-37 (45)
3 d1vf5c3 f.23.23.1 (C:250-286) 10.4 64 0.0047 17.7 1.6 25 200-224 10-34 (37)
4 d2oara1 f.16.1.1 (A:10-118) Ga 9.5 1E+02 0.0074 21.0 2.9 13 216-228 81-93 (109)
5 d2nr5a1 a.25.6.1 (A:1-64) Hypo 6.5 1.4E+02 0.0098 17.6 2.0 27 216-242 15-41 (64)
6 d2iuba2 f.17.3.1 (A:286-349) M 5.6 50 0.0036 20.0 -0.4 16 164-179 17-32 (64)
7 d1k8ke_ a.148.1.1 (E:) Arp2/3 5.3 74 0.0054 23.7 0.3 19 208-226 66-84 (174)
8 d1zr9a1 g.37.1.4 (A:28-94) Zin 4.5 2.4E+02 0.017 17.2 2.4 16 217-232 41-56 (67)
9 d1r3jc_ f.14.1.1 (C:) Potassiu 3.9 4.9E+02 0.036 16.2 7.1 13 213-225 87-99 (103)
10 d1l2wi_ d.198.1.1 (I:) YopE ch 3.8 2E+02 0.014 16.5 1.4 11 249-259 24-34 (57)
No 1
>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]}
Probab=27.53 E-value=43 Score=21.38 Aligned_cols=20 Identities=0% Similarity=0.230 Sum_probs=10.4
Q ss_pred HHHHHHHHHhHHHHHHHHhh
Q 024843 86 VLPYWVGLLFRDRIHQWLKR 105 (261)
Q Consensus 86 ~i~f~igR~~~~~i~~~l~~ 105 (261)
.+++++.|+.++.++|..++
T Consensus 13 ~i~~~i~~~i~~~~~~~~~~ 32 (86)
T d2vv5a3 13 IVGLIIARMISNAVNRLMIS 32 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34555556555555554443
No 2
>d1q90a3 f.23.23.1 (A:248-292) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=13.86 E-value=1.2e+02 Score=17.30 Aligned_cols=29 Identities=21% Similarity=0.322 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchh
Q 024843 200 ISFIIAVLTIIAFTVYAKRALKELERGEA 228 (261)
Q Consensus 200 v~~~~~vl~~i~~~~~~kr~~~~~~~~~~ 228 (261)
+.+..++++.=.+.++.||-.++.|..|-
T Consensus 9 l~F~~~v~laQi~LVLKKKQfEKVQ~aEm 37 (45)
T d1q90a3 9 LVFFSFVLLTQVLLVLKKKQFEKVQLAEM 37 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45556666666677788888888887664
No 3
>d1vf5c3 f.23.23.1 (C:250-286) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=10.37 E-value=64 Score=17.72 Aligned_cols=25 Identities=20% Similarity=0.417 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024843 200 ISFIIAVLTIIAFTVYAKRALKELE 224 (261)
Q Consensus 200 v~~~~~vl~~i~~~~~~kr~~~~~~ 224 (261)
+.+..++++.=.+.++.||-.++.|
T Consensus 10 ~~F~~~v~laQi~lVlKKKQ~EkVQ 34 (37)
T d1vf5c3 10 IAFICLVMLAQLMLILKKKQVEKVQ 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHTGGGCTTG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555455555555444443
No 4
>d2oara1 f.16.1.1 (A:10-118) Gated mechanosensitive channel {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=9.50 E-value=1e+02 Score=20.96 Aligned_cols=13 Identities=8% Similarity=0.064 Sum_probs=7.8
Q ss_pred HHHHHHHHHhchh
Q 024843 216 AKRALKELERGEA 228 (261)
Q Consensus 216 ~kr~~~~~~~~~~ 228 (261)
..+.+++.++++.
T Consensus 81 vvk~~n~~~~k~~ 93 (109)
T d2oara1 81 VVLPYNTLRKKGE 93 (109)
T ss_dssp THHHHHHHHHTTC
T ss_pred HHHHHHHHhhcCC
Confidence 3556777765543
No 5
>d2nr5a1 a.25.6.1 (A:1-64) Hypothetical protein SO2669 {Shewanella oneidensis [TaxId: 70863]}
Probab=6.50 E-value=1.4e+02 Score=17.56 Aligned_cols=27 Identities=22% Similarity=0.188 Sum_probs=13.6
Q ss_pred HHHHHHHHHhchhcCCCCCCCCCCccc
Q 024843 216 AKRALKELERGEANGEETSTSTGSGFE 242 (261)
Q Consensus 216 ~kr~~~~~~~~~~~~~~~~~~~~~~~~ 242 (261)
+..++.+++.-++.|...+||+.+|-+
T Consensus 15 aeealgklkairqlcgaedssdssdmq 41 (64)
T d2nr5a1 15 AEEALGKLKAIRQLCGAEDSSDSSDMQ 41 (64)
T ss_dssp HHHHHHHHHHHHHTTTTTCC----HHH
T ss_pred HHHHHHHHHHHHHHhCCccCCcchhhH
Confidence 344555666666666666666666543
No 6
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=5.63 E-value=50 Score=20.01 Aligned_cols=16 Identities=25% Similarity=0.212 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 024843 164 VPEAFIYIYSGRLIRT 179 (261)
Q Consensus 164 ~p~~~l~~~~G~~l~~ 179 (261)
+|.+++....|....+
T Consensus 17 lP~t~i~gifGMN~~~ 32 (64)
T d2iuba2 17 MPLTFIAGIYGMNFEY 32 (64)
T ss_dssp HHHHHHTTSCC-----
T ss_pred HHHHHHHhhhccCCCC
Confidence 3666666666665443
No 7
>d1k8ke_ a.148.1.1 (E:) Arp2/3 complex 21 kDa subunit ARPC3 {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.31 E-value=74 Score=23.71 Aligned_cols=19 Identities=37% Similarity=0.618 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 024843 208 TIIAFTVYAKRALKELERG 226 (261)
Q Consensus 208 ~~i~~~~~~kr~~~~~~~~ 226 (261)
++|+++.|....++++++.
T Consensus 66 ~LIYltlyiseCL~kl~~~ 84 (174)
T d1k8ke_ 66 TLIYITLYISECLKKLQKC 84 (174)
T ss_dssp HHHHHHHHHHHHHHHHTSC
T ss_pred eeeehHHHHHHHHHHHhcC
Confidence 3468888888888888764
No 8
>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.48 E-value=2.4e+02 Score=17.24 Aligned_cols=16 Identities=38% Similarity=0.418 Sum_probs=8.1
Q ss_pred HHHHHHHHhchhcCCC
Q 024843 217 KRALKELERGEANGEE 232 (261)
Q Consensus 217 kr~~~~~~~~~~~~~~ 232 (261)
||++++++++.-.+++
T Consensus 41 Krrvk~L~~~p~t~~e 56 (67)
T d1zr9a1 41 KKRLKQLSVEPYSQEE 56 (67)
T ss_dssp HHHHHHHTSCSSCTTT
T ss_pred HHHHHHhccCcCCHHH
Confidence 5666666554333333
No 9
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=3.88 E-value=4.9e+02 Score=16.25 Aligned_cols=13 Identities=8% Similarity=-0.005 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHh
Q 024843 213 TVYAKRALKELER 225 (261)
Q Consensus 213 ~~~~kr~~~~~~~ 225 (261)
..+.....++.++
T Consensus 87 ~~i~~~~~~~~~~ 99 (103)
T d1r3jc_ 87 AALATWFVGREQE 99 (103)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333434443333
No 10
>d1l2wi_ d.198.1.1 (I:) YopE chaperone SycE {Yersinia pestis [TaxId: 632]}
Probab=3.83 E-value=2e+02 Score=16.50 Aligned_cols=11 Identities=45% Similarity=0.661 Sum_probs=0.0
Q ss_pred ccCCCCCCCCC
Q 024843 249 ERTKHPTSSSF 259 (261)
Q Consensus 249 ~~~~~~~~~~~ 259 (261)
+|+|.|.-||.
T Consensus 24 grtespqgssl 34 (57)
T d1l2wi_ 24 GRTESPQGSSL 34 (57)
T ss_dssp TCCCCCCCCCS
T ss_pred cccCCCCcchH
Done!