Query 024844
Match_columns 261
No_of_seqs 210 out of 1262
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 07:49:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024844.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024844hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2332 Ferritin [Inorganic io 100.0 2.5E-48 5.3E-53 333.5 14.3 170 83-256 5-177 (178)
2 PRK15022 ferritin-like protein 100.0 3.5E-47 7.6E-52 325.4 20.6 160 91-258 2-162 (167)
3 PRK10304 ferritin; Provisional 100.0 1.6E-44 3.4E-49 308.5 20.8 160 91-258 2-162 (165)
4 cd00904 Ferritin Ferritin iron 100.0 1.1E-44 2.4E-49 306.9 18.3 155 92-252 1-160 (160)
5 COG1528 Ftn Ferritin-like prot 100.0 2.4E-43 5.1E-48 299.6 20.1 160 91-258 2-162 (167)
6 cd01056 Euk_Ferritin eukaryoti 100.0 1.4E-41 2.9E-46 287.7 18.9 156 92-253 1-161 (161)
7 cd01055 Nonheme_Ferritin nonhe 100.0 7.7E-38 1.7E-42 261.4 19.9 155 92-254 1-156 (156)
8 PRK10635 bacterioferritin; Pro 100.0 2.6E-28 5.6E-33 207.3 19.4 144 90-242 2-145 (158)
9 TIGR00754 bfr bacterioferritin 100.0 2.1E-27 4.7E-32 199.8 19.3 142 92-242 4-145 (157)
10 PF00210 Ferritin: Ferritin-li 99.9 1E-25 2.2E-30 181.6 16.7 137 96-241 1-142 (142)
11 cd00907 Bacterioferritin Bacte 99.9 4.3E-25 9.3E-30 183.2 19.4 143 92-243 3-145 (153)
12 cd01041 Rubrerythrin Rubreryth 99.9 1.6E-22 3.4E-27 166.1 15.9 131 95-238 2-133 (134)
13 cd01052 DPSL DPS-like protein, 99.9 1.1E-21 2.4E-26 161.9 17.4 135 92-235 4-148 (148)
14 COG2193 Bfr Bacterioferritin ( 99.9 1.3E-20 2.7E-25 157.6 17.6 143 91-242 3-145 (157)
15 cd01046 Rubrerythrin_like rubr 99.8 9.7E-19 2.1E-23 142.5 16.0 121 95-238 2-122 (123)
16 PRK13456 DNA protection protei 99.7 3.1E-15 6.7E-20 129.9 17.6 141 92-236 18-163 (186)
17 cd01043 DPS DPS protein, ferri 99.3 3.2E-11 6.9E-16 99.1 14.5 129 98-234 2-138 (139)
18 cd00657 Ferritin_like Ferritin 99.3 1.6E-10 3.4E-15 88.4 14.6 123 98-234 2-129 (130)
19 cd07908 Mn_catalase_like Manga 99.3 4E-10 8.8E-15 94.3 17.5 138 91-235 10-154 (154)
20 cd01051 Mn_catalase Manganese 98.9 1.3E-07 2.7E-12 80.5 17.5 135 92-238 18-155 (156)
21 cd01045 Ferritin_like_AB Uncha 98.9 3.1E-08 6.8E-13 78.8 12.9 129 97-234 1-138 (139)
22 PF02915 Rubrerythrin: Rubrery 98.8 2.8E-07 6E-12 73.5 13.8 129 97-234 1-136 (137)
23 PRK09448 DNA starvation/statio 98.6 3.2E-06 6.9E-11 72.2 17.1 132 92-235 20-160 (162)
24 COG2406 Protein distantly rela 98.6 8E-06 1.7E-10 68.9 16.8 138 92-236 15-160 (172)
25 COG0783 Dps DNA-binding ferrit 98.3 9.5E-05 2E-09 63.1 16.9 133 93-234 14-154 (156)
26 cd01044 Ferritin_CCC1_N Ferrit 98.3 1.2E-05 2.6E-10 65.2 10.6 121 98-236 2-124 (125)
27 COG1633 Uncharacterized conser 98.2 0.00021 4.6E-09 62.0 17.5 139 93-242 23-173 (176)
28 PRK12775 putative trifunctiona 97.9 0.00049 1.1E-08 73.7 16.9 138 93-240 859-1000(1006)
29 PF13668 Ferritin_2: Ferritin- 97.8 0.002 4.3E-08 52.6 16.4 131 96-236 3-136 (137)
30 COG1592 Rubrerythrin [Energy p 97.7 0.0014 3.1E-08 56.5 14.2 125 95-239 5-130 (166)
31 cd01042 DMQH Demethoxyubiquino 97.2 0.014 3E-07 50.3 13.5 122 105-232 11-135 (165)
32 TIGR02284 conserved hypothetic 96.5 0.064 1.4E-06 44.7 12.1 124 96-234 2-134 (139)
33 cd01050 Acyl_ACP_Desat Acyl AC 96.5 0.3 6.6E-06 45.8 17.4 149 90-242 55-209 (297)
34 cd01048 Ferritin_like_AB2 Unch 96.1 0.48 1E-05 39.1 14.8 121 97-231 3-131 (135)
35 PF03232 COQ7: Ubiquinone bios 96.1 0.17 3.7E-06 43.9 12.5 123 103-233 11-142 (172)
36 PF03405 FA_desaturase_2: Fatt 96.1 0.62 1.3E-05 44.4 17.3 149 90-241 57-214 (330)
37 PF09537 DUF2383: Domain of un 95.2 0.17 3.6E-06 39.8 8.8 63 94-161 1-63 (111)
38 PF05974 DUF892: Domain of unk 93.2 4.7 0.0001 34.1 16.1 138 93-238 4-153 (159)
39 cd07910 MiaE MiaE tRNA-modifyi 92.7 6.4 0.00014 34.5 16.5 139 94-242 18-159 (180)
40 COG2941 CAT5 Ubiquinone biosyn 92.7 5.8 0.00013 35.2 13.9 145 79-231 22-174 (204)
41 PF04305 DUF455: Protein of un 91.6 5.7 0.00012 36.5 13.3 143 93-240 65-210 (253)
42 PF02915 Rubrerythrin: Rubrery 89.8 1.9 4E-05 33.8 7.4 56 181-238 1-56 (137)
43 COG1633 Uncharacterized conser 89.0 2.8 6E-05 36.4 8.5 60 177-240 23-82 (176)
44 PF05067 Mn_catalase: Manganes 88.1 7 0.00015 36.6 11.0 144 91-242 17-198 (283)
45 cd01052 DPSL DPS-like protein, 87.4 5.1 0.00011 32.5 8.7 61 178-239 6-66 (148)
46 COG3546 Mn-containing catalase 87.2 15 0.00032 34.2 12.3 143 91-242 17-193 (277)
47 PF12902 Ferritin-like: Ferrit 86.7 3.7 8E-05 37.1 8.1 62 99-162 1-62 (227)
48 cd01045 Ferritin_like_AB Uncha 86.7 3.8 8.2E-05 31.9 7.4 55 181-239 1-55 (139)
49 cd00907 Bacterioferritin Bacte 86.3 5.8 0.00013 32.3 8.6 61 178-239 5-65 (153)
50 PF00210 Ferritin: Ferritin-li 85.8 5.6 0.00012 31.2 8.0 58 181-239 2-59 (142)
51 cd01046 Rubrerythrin_like rubr 84.8 6.8 0.00015 31.6 8.1 59 179-238 2-60 (123)
52 cd01041 Rubrerythrin Rubreryth 84.4 11 0.00023 30.6 9.2 60 93-154 72-132 (134)
53 PLN00179 acyl- [acyl-carrier p 80.3 18 0.00039 35.3 10.3 149 91-242 115-272 (390)
54 cd00657 Ferritin_like Ferritin 79.3 15 0.00032 27.1 7.7 53 182-238 2-54 (130)
55 cd07908 Mn_catalase_like Manga 77.9 11 0.00025 31.0 7.3 55 92-151 99-153 (154)
56 PF09537 DUF2383: Domain of un 76.9 20 0.00043 27.9 8.0 57 179-239 2-58 (111)
57 cd01055 Nonheme_Ferritin nonhe 73.7 17 0.00038 29.7 7.3 59 94-154 80-138 (156)
58 PF13668 Ferritin_2: Ferritin- 73.3 20 0.00043 28.8 7.4 56 180-236 3-63 (137)
59 cd07647 F-BAR_PSTPIP The F-BAR 67.5 71 0.0015 28.5 10.4 92 126-239 20-112 (239)
60 COG2833 Uncharacterized protei 67.3 1.1E+02 0.0023 28.4 12.1 122 91-230 72-208 (268)
61 PRK12775 putative trifunctiona 67.1 24 0.00053 38.4 8.5 57 177-237 859-915 (1006)
62 cd07673 F-BAR_FCHO2 The F-BAR 67.0 78 0.0017 29.1 10.7 30 127-156 28-57 (269)
63 cd07648 F-BAR_FCHO The F-BAR ( 66.1 64 0.0014 29.1 9.9 31 127-157 21-51 (261)
64 PF14530 DUF4439: Domain of un 63.8 84 0.0018 26.0 15.7 117 98-229 1-118 (131)
65 cd07651 F-BAR_PombeCdc15_like 62.9 1.1E+02 0.0024 27.1 10.9 32 126-157 20-51 (236)
66 cd07649 F-BAR_GAS7 The F-BAR ( 59.2 1.4E+02 0.003 27.0 11.1 95 126-241 20-115 (233)
67 PF06175 MiaE: tRNA-(MS[2]IO[6 58.6 1.5E+02 0.0033 27.2 16.3 143 93-242 26-210 (240)
68 cd07674 F-BAR_FCHO1 The F-BAR 56.4 1.6E+02 0.0034 26.8 10.7 27 127-153 21-47 (261)
69 PF07875 Coat_F: Coat F domain 55.3 72 0.0016 22.5 8.1 56 98-158 5-60 (64)
70 TIGR02284 conserved hypothetic 54.2 43 0.00094 27.6 6.1 36 203-239 22-57 (139)
71 cd07909 YciF YciF bacterial st 53.8 1.4E+02 0.0029 25.2 16.9 128 96-232 5-144 (147)
72 cd07672 F-BAR_PSTPIP2 The F-BA 51.3 1.9E+02 0.0041 26.2 10.9 92 126-239 20-113 (240)
73 cd01048 Ferritin_like_AB2 Unch 50.8 69 0.0015 26.2 6.8 53 180-239 2-54 (135)
74 cd07671 F-BAR_PSTPIP1 The F-BA 48.6 2.1E+02 0.0045 25.9 11.5 92 127-240 21-113 (242)
75 PRK10635 bacterioferritin; Pro 48.2 1.2E+02 0.0027 25.6 8.0 61 91-153 79-139 (158)
76 cd01056 Euk_Ferritin eukaryoti 48.1 1.4E+02 0.0031 24.8 8.4 60 178-238 3-64 (161)
77 COG4445 MiaE Hydroxylase for s 46.7 2E+02 0.0044 25.3 13.2 65 98-168 32-96 (203)
78 PF05974 DUF892: Domain of unk 46.3 1.5E+02 0.0033 24.9 8.3 56 180-239 7-62 (159)
79 cd07909 YciF YciF bacterial st 46.1 1.6E+02 0.0035 24.8 8.4 55 180-238 5-59 (147)
80 PRK10304 ferritin; Provisional 45.5 1.8E+02 0.0039 24.7 8.7 60 178-238 5-64 (165)
81 cd07658 F-BAR_NOSTRIN The F-BA 44.8 2.1E+02 0.0046 25.7 9.5 28 127-154 21-48 (239)
82 PF11583 AurF: P-aminobenzoate 43.3 1.9E+02 0.0041 26.5 9.1 107 128-238 112-227 (304)
83 cd01051 Mn_catalase Manganese 42.1 1.7E+02 0.0036 24.7 7.9 61 90-155 95-155 (156)
84 cd07610 FCH_F-BAR The Extended 40.4 2.2E+02 0.0047 23.8 11.0 34 126-159 15-48 (191)
85 COG1592 Rubrerythrin [Energy p 40.3 1.5E+02 0.0033 25.6 7.5 59 179-238 5-63 (166)
86 cd01044 Ferritin_CCC1_N Ferrit 37.4 2.1E+02 0.0045 22.7 7.5 52 183-238 3-54 (125)
87 cd01058 AAMH_B Aromatic and Al 36.8 3.6E+02 0.0078 25.2 14.5 110 128-238 129-254 (304)
88 PF11860 DUF3380: Protein of u 34.9 76 0.0016 27.7 4.8 58 97-156 78-135 (175)
89 PRK13456 DNA protection protei 33.4 2.9E+02 0.0063 24.4 8.2 61 177-238 19-79 (186)
90 PF03232 COQ7: Ubiquinone bios 32.3 2.7E+02 0.0058 24.1 7.8 57 180-239 4-60 (172)
91 smart00055 FCH Fes/CIP4 homolo 32.3 2E+02 0.0043 20.9 7.4 28 127-154 25-52 (87)
92 cd07653 F-BAR_CIP4-like The F- 32.2 3.6E+02 0.0077 23.8 12.3 34 126-159 20-53 (251)
93 PF03979 Sigma70_r1_1: Sigma-7 30.5 81 0.0018 23.6 3.8 51 190-242 2-52 (82)
94 PF07875 Coat_F: Coat F domain 29.9 2E+02 0.0043 20.2 8.9 53 180-236 3-55 (64)
95 PF00611 FCH: Fes/CIP4, and EF 29.2 1.1E+02 0.0024 22.2 4.4 31 126-156 24-54 (91)
96 KOG4061 DMQ mono-oxygenase/Ubi 27.8 4.4E+02 0.0096 23.5 9.1 117 104-230 58-184 (217)
97 COG3685 Uncharacterized protei 27.7 4.1E+02 0.0089 23.1 8.3 55 180-238 11-65 (167)
98 KOG3518 Putative guanine nucle 25.7 1.1E+02 0.0024 29.8 4.6 126 126-255 229-365 (521)
99 COG1152 CdhA CO dehydrogenase/ 25.5 3.6E+02 0.0078 28.3 8.3 92 141-236 110-212 (772)
100 PF12069 DUF3549: Protein of u 25.3 1.3E+02 0.0028 29.1 4.9 59 94-154 127-194 (340)
101 PRK09448 DNA starvation/statio 24.9 3.5E+02 0.0076 22.8 7.1 59 178-237 22-80 (162)
102 cd07655 F-BAR_PACSIN The F-BAR 24.6 5.3E+02 0.011 23.3 11.2 34 126-159 20-53 (258)
103 TIGR00754 bfr bacterioferritin 23.8 4.1E+02 0.0089 21.8 9.0 59 93-153 81-139 (157)
104 PRK13182 racA polar chromosome 23.4 4.8E+02 0.01 22.6 7.8 72 144-217 44-122 (175)
105 PF02332 Phenol_Hydrox: Methan 21.9 5.7E+02 0.012 22.7 12.0 136 96-238 76-227 (233)
106 PF10097 DUF2335: Predicted me 21.2 2E+02 0.0043 19.9 4.0 29 126-154 12-40 (50)
107 cd00904 Ferritin Ferritin iron 20.8 4.9E+02 0.011 21.6 8.7 59 179-238 4-64 (160)
108 cd06891 PX_Vps17p The phosphoi 20.6 3.9E+02 0.0085 22.4 6.4 66 146-218 74-139 (140)
No 1
>KOG2332 consensus Ferritin [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.5e-48 Score=333.53 Aligned_cols=170 Identities=53% Similarity=0.860 Sum_probs=164.8
Q ss_pred ccchhcccCcHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeec
Q 024844 83 LLSLARQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLH 162 (261)
Q Consensus 83 ~~s~aRq~~s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~ 162 (261)
..+.+|++++++|+.++|.|||.|+++||+|++|++||+||++++|||++||.++|+|||+||++||+|+|+|||+|+++
T Consensus 5 ~~~~~r~~~~~~~~~~in~~in~el~~sy~Ylsma~yf~rd~v~l~g~~~ff~~~s~eereha~klm~~~n~rgg~i~l~ 84 (178)
T KOG2332|consen 5 MSSEARQNYHDEAEAAINSQINLELNASYVYLSMAAYFDRDDVALKGFAKFFLKQSQEEREHAEKLMKTQNMRGGRIELQ 84 (178)
T ss_pred chHHHhhcchhhccchhhhhccchhccchhhhhhhhccCccccchhhhhhhhhhhhhhhhhhHHHHHHHHHHhCCccccc
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHHhcc
Q 024844 163 SIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVG 242 (261)
Q Consensus 163 ~I~~P~~~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~r~g 242 (261)
+|.+|.. .+|++.+++||.||.+||.|+++|.+||.+|.+.+|++++||||++||.|||+.|++|++++++++++|
T Consensus 85 ~i~~P~~----~ew~~~l~ale~al~LEk~vn~sLl~Lh~lA~~knD~hL~dflE~~fL~eQVksIkeL~~~~~~l~k~~ 160 (178)
T KOG2332|consen 85 DIKKPEL----DEWGKGLEALEAALHLEKNVNQSLLELHSLATKKNDPHLCDFLESHFLNEQVKSIKELSDYLANLKKMG 160 (178)
T ss_pred ccccccc----chhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHhhhHHHHHHHHHHHHHHHhHHhcc
Confidence 9999954 678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ---CCchhhHHhHHhhc
Q 024844 243 ---KGHGLWHFDQMLLH 256 (261)
Q Consensus 243 ---~g~g~ylfD~~L~~ 256 (261)
.|+|+|+||+++.+
T Consensus 161 ~~~~g~~~~lfd~~~~~ 177 (178)
T KOG2332|consen 161 APDGGLGEYLFDKYLLS 177 (178)
T ss_pred CCCCchhhhhhhhhhcc
Confidence 78999999999875
No 2
>PRK15022 ferritin-like protein; Provisional
Probab=100.00 E-value=3.5e-47 Score=325.39 Aligned_cols=160 Identities=18% Similarity=0.223 Sum_probs=153.8
Q ss_pred CcHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCCC
Q 024844 91 YEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSE 170 (261)
Q Consensus 91 ~s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~P~~~ 170 (261)
.+++++.+||+|||.|++|||+|++||+||+ +.+|||||+||+.+|+|||+||+||++|+++|||+|.+++|++|+.+
T Consensus 2 ~~~~~~~~LN~QIn~E~~aSy~YLsMa~~~~--~~~L~GfA~ff~~qa~EEreHA~k~~~yl~~rGg~v~l~~I~~P~~~ 79 (167)
T PRK15022 2 ATAGMLLKLNSQMNLEFYASNLYLHLSEWCS--EQSLNGTATFLRAQAQSNVTQMMRMFNFMKSAGATPIVKAIDVPGEK 79 (167)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCChhHHHHHHHHHHHHHHHHHHHHHHHHHcCCceeeCCCCCCccc
Confidence 5789999999999999999999999999998 56999999999999999999999999999999999999999999876
Q ss_pred CCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHHhcc-CCchhhH
Q 024844 171 FDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVG-KGHGLWH 249 (261)
Q Consensus 171 f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~r~g-~g~g~yl 249 (261)
| ++++++|+.+|+||+.||+.|++|+++|.+++|++|++||+ ||+.||+++++.+.++++.++++| +|.|+|+
T Consensus 80 ~-----~s~~e~fe~al~hEk~vt~~I~~L~~~A~~~~D~~t~~FL~-wfv~EQ~eEe~~~~~ild~l~~~~~~g~g~~~ 153 (167)
T PRK15022 80 L-----NSLEELFQKTLEEYEQRSSTLAQLADEAKALNDDSTLNFLR-DLEKEQQHDGLLLQTILDEVRSAKLAGLCPVQ 153 (167)
T ss_pred c-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCcchhH
Confidence 5 57899999999999999999999999999999999999999 999999999999999999999998 7899999
Q ss_pred HhHHhhcCC
Q 024844 250 FDQMLLHEG 258 (261)
Q Consensus 250 fD~~L~~~~ 258 (261)
||++++.+.
T Consensus 154 ~D~~~~~~~ 162 (167)
T PRK15022 154 TDQHLLNVV 162 (167)
T ss_pred hhHHHHHhh
Confidence 999998764
No 3
>PRK10304 ferritin; Provisional
Probab=100.00 E-value=1.6e-44 Score=308.52 Aligned_cols=160 Identities=23% Similarity=0.390 Sum_probs=153.7
Q ss_pred CcHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCCC
Q 024844 91 YEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSE 170 (261)
Q Consensus 91 ~s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~P~~~ 170 (261)
++++++.+||+|||.|++|||+|++||.||+ ++||||||+||+.+|.|||+||++|++|+++|||+|.+++|++|+.+
T Consensus 2 ~~~~i~~~Ln~qin~El~As~~Yl~ma~~~~--~~gl~g~A~~f~~qs~EE~~HA~kl~~~i~~rgg~~~~~~i~~p~~~ 79 (165)
T PRK10304 2 LKPEMIEKLNEQMNLELYSSLLYQQMSAWCS--YHTFEGAAAFLRRHAQEEMTHMQRLFDYLTDTGNLPRINTVESPFAE 79 (165)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hCCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeeeCCCCCCccc
Confidence 6899999999999999999999999999999 67999999999999999999999999999999999999999999876
Q ss_pred CCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHHhcc-CCchhhH
Q 024844 171 FDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVG-KGHGLWH 249 (261)
Q Consensus 171 f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~r~g-~g~g~yl 249 (261)
| .++.++|+.+|++|+.+++.|++++++|.+++|+.|++||+ |||+||||+++.+++++++++++| +|.|+|+
T Consensus 80 ~-----~s~~e~~~~~l~~E~~vt~~i~~l~~~A~~~~D~~t~~fl~-~fl~EQveEe~~~~~l~~~l~~~~~~g~~~y~ 153 (165)
T PRK10304 80 Y-----SSLDELFQETYKHEQLITQKINELAHAAMTNQDYPTFNFLQ-WYVSEQHEEEKLFKSIIDKLSLAGKSGEGLYF 153 (165)
T ss_pred c-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhCCCcchHHH
Confidence 5 56899999999999999999999999999999999999999 999999999999999999999999 6899999
Q ss_pred HhHHhhcCC
Q 024844 250 FDQMLLHEG 258 (261)
Q Consensus 250 fD~~L~~~~ 258 (261)
||+++....
T Consensus 154 ~D~~l~~~~ 162 (165)
T PRK10304 154 IDKELSTLD 162 (165)
T ss_pred HhHHHHHhh
Confidence 999997654
No 4
>cd00904 Ferritin Ferritin iron storage proteins. Ferritins are the primary iron storage proteins of most living organisms and members of a broad superfamily of ferritin-like diiron-carboxylate proteins. The iron-free (apoferritin) ferritin molecule is a protein shell composed of 24 protein chains arranged in 432 symmetry. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the dinuclear ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite; the protein shell can hold up to 4500 iron atoms. In vertebrates, two types of chains (subunits) have been characterized, H or M (fast) and L (slow), which differ in rates of iron uptake and mineralization. Bacterial non-heme ferritins are composed only of H chains. Fe(II) oxidation in the H/M subunits take place initially at the ferroxidase center, a carboxylate-bridged diiron center, located within the subunit four-helix bundle. In a complementary rol
Probab=100.00 E-value=1.1e-44 Score=306.92 Aligned_cols=155 Identities=49% Similarity=0.874 Sum_probs=149.4
Q ss_pred cHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCC-C
Q 024844 92 EDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPS-E 170 (261)
Q Consensus 92 s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~P~~-~ 170 (261)
+++|+++||+|||.|+++||+|++||+||++++|||||||+||+.+|+|||+||++|++||++|||+|+++.|++|.. +
T Consensus 1 ~~~~~~~Ln~qi~~El~as~~Yl~ma~~~~~~~~~l~g~a~~f~~~s~eE~~HA~~l~~yi~~rgg~~~l~~i~~~~~~~ 80 (160)
T cd00904 1 SEKVEAAVNRQLNLELYASYTYLSMATYFDRDDVALKGVAHFFKEQAQEEREHAEKFYKYQNERGGRVELQDIEKPPSDE 80 (160)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHCCCccccCcCCCCcccc
Confidence 578999999999999999999999999999999999999999999999999999999999999999999999999987 4
Q ss_pred CCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHh-hHHHHHHHHHHHHHHHHHHHhcc-C--Cch
Q 024844 171 FDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESE-FLGEQVEAINKIAKYVSQLRMVG-K--GHG 246 (261)
Q Consensus 171 f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~-FL~EQve~ik~l~~~l~~L~r~g-~--g~g 246 (261)
| ++++++|+.+|++|+.+++.|++|+++|.+++|+.|++||+ | ||+||+++++++++++++++++| + |.|
T Consensus 81 ~-----~~~~e~~e~al~~Ek~v~~~i~~l~~~A~~~~D~~t~~fl~-~~fi~eQ~ee~~~~~~~l~~l~~~~~~~~~~~ 154 (160)
T cd00904 81 W-----GGTLDAMEAALKLEKFVNQALLDLHELASEEKDPHLCDFLE-SHFLDEQVKEIKQVGDILTNLERLNGQQAGSG 154 (160)
T ss_pred c-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHhh-chhhHHHHHHHHHHHHHHHHHHhhcCCCCCce
Confidence 4 57899999999999999999999999999999999999999 8 99999999999999999999998 4 789
Q ss_pred hhHHhH
Q 024844 247 LWHFDQ 252 (261)
Q Consensus 247 ~ylfD~ 252 (261)
+|+||+
T Consensus 155 ~~~~D~ 160 (160)
T cd00904 155 EYLFDR 160 (160)
T ss_pred eeeeCC
Confidence 999996
No 5
>COG1528 Ftn Ferritin-like protein [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.4e-43 Score=299.61 Aligned_cols=160 Identities=29% Similarity=0.484 Sum_probs=154.6
Q ss_pred CcHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCCC
Q 024844 91 YEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSE 170 (261)
Q Consensus 91 ~s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~P~~~ 170 (261)
.++++.++||+|||.|+++||+|++||+||+ +.+|||+|+||+.||.||+.||+||++|++.||++|.+..|.+|+.+
T Consensus 2 ls~~~~~~LN~Q~N~E~yas~lYl~maa~~~--~~~l~G~A~f~~~qa~EE~~H~~k~~~yl~~~g~~~~l~~I~~P~~~ 79 (167)
T COG1528 2 LSEKMIELLNEQMNLEFYASNLYLQMAAWCS--SESLPGFAKFLRAQAQEELTHAMKLFNYLNERGARPELKAIEAPPNK 79 (167)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hcCChhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCcCCCccc
Confidence 5789999999999999999999999999999 57999999999999999999999999999999999999999999988
Q ss_pred CCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHHhcc-CCchhhH
Q 024844 171 FDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVG-KGHGLWH 249 (261)
Q Consensus 171 f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~r~g-~g~g~yl 249 (261)
|+ ++.++|+.+|++|+.||+.|++|.++|.+++|+.|.+||+ ||+.||+|+++.++++++.++++| +|.|+|+
T Consensus 80 ~~-----s~~e~f~~tlehEq~vt~~I~~L~~~a~~~kD~~T~nFLq-Wfv~EQ~eEe~l~~~I~d~~~~ag~~~~~l~~ 153 (167)
T COG1528 80 FS-----SLKELFEKTLEHEQKVTSSINELAEVAREEKDYATFNFLQ-WFVAEQVEEEKLFKTILDKLELAGNDGEGLYL 153 (167)
T ss_pred cC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHcCCCccchhh
Confidence 75 5799999999999999999999999999999999999999 999999999999999999999999 7899999
Q ss_pred HhHHhhcCC
Q 024844 250 FDQMLLHEG 258 (261)
Q Consensus 250 fD~~L~~~~ 258 (261)
+|++|+++.
T Consensus 154 ~D~~L~~~~ 162 (167)
T COG1528 154 IDKELKNRA 162 (167)
T ss_pred hHHHHHhhc
Confidence 999999863
No 6
>cd01056 Euk_Ferritin eukaryotic ferritins. Eukaryotic Ferritin (Euk_Ferritin) domain. Ferritins are the primary iron storage proteins of most living organisms and members of a broad superfamily of ferritin-like diiron-carboxylate proteins. The iron-free (apoferritin) ferritin molecule is a protein shell composed of 24 protein chains arranged in 432 symmetry. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the dinuclear ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite; the protein shell can hold up to 4500 iron atoms. In vertebrates, two types of chains (subunits) have been characterized, H or M (fast) and L (slow), which differ in rates of iron uptake and mineralization. Fe(II) oxidation in the H/M subunits take place initially at the ferroxidase center, a carboxylate-bridged diiron center, located within the subunit four-helix bundle. In a complementary role, negatively charged r
Probab=100.00 E-value=1.4e-41 Score=287.67 Aligned_cols=156 Identities=57% Similarity=0.963 Sum_probs=148.6
Q ss_pred cHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCC-CC
Q 024844 92 EDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPP-SE 170 (261)
Q Consensus 92 s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~P~-~~ 170 (261)
+++|+.+||+|||.|++|||+|++||.||++.++|+|||++||+.+|+|||+||++|++||+.|||+|++++|++|. ..
T Consensus 1 ~~~i~~~Ln~~i~~El~as~~Yl~~a~~~~~~~~~l~g~a~~f~~~a~eE~~HA~~l~~~i~~rgg~~~~~~i~~~~~~~ 80 (161)
T cd01056 1 HEECEAALNKQINLELNASYVYLSMAAYFDRDDVALPGFAKFFRKLSDEEREHAEKLIKYQNKRGGRVVLQDIKKPEKDE 80 (161)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeecCCCCCCCCcc
Confidence 47899999999999999999999999999977779999999999999999999999999999999999999999997 44
Q ss_pred CCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHh-hHHHHHHHHHHHHHHHHHHHhccC---Cch
Q 024844 171 FDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESE-FLGEQVEAINKIAKYVSQLRMVGK---GHG 246 (261)
Q Consensus 171 f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~-FL~EQve~ik~l~~~l~~L~r~g~---g~g 246 (261)
| .++.++|+.+|++|+.+++.|++++++|.+++|+.|.+||+ | ||.||+++++++++++++++++++ |.|
T Consensus 81 ~-----~~~~e~l~~al~~E~~vt~~~~~l~~~A~~~~D~~t~~fl~-~~fl~eQ~e~~~~~~~~l~~l~~~~~~~~~~~ 154 (161)
T cd01056 81 W-----GSGLEALELALDLEKLVNQSLLDLHKLASEHNDPHLADFLE-SEFLEEQVESIKKLAGYITNLKRVGKPQSGLG 154 (161)
T ss_pred c-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHhHcCCHhHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHhcCCCCCce
Confidence 4 57899999999999999999999999999999999999999 7 999999999999999999999984 789
Q ss_pred hhHHhHH
Q 024844 247 LWHFDQM 253 (261)
Q Consensus 247 ~ylfD~~ 253 (261)
+|+||++
T Consensus 155 ~yl~D~~ 161 (161)
T cd01056 155 EYLFDKY 161 (161)
T ss_pred eeeccCC
Confidence 9999973
No 7
>cd01055 Nonheme_Ferritin nonheme-containing ferritins. Nonheme Ferritin domain, found in archaea and bacteria, is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The ferritin protein shell is composed of 24 protein subunits arranged in 432 symmetry. Each protein subunit, a four-helix bundle with a fifth short terminal helix, contains a dinuclear ferroxidase center (H type). Unique to this group of proteins is a third metal site in the ferroxidase center. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite.
Probab=100.00 E-value=7.7e-38 Score=261.44 Aligned_cols=155 Identities=40% Similarity=0.611 Sum_probs=148.3
Q ss_pred cHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCCCC
Q 024844 92 EDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEF 171 (261)
Q Consensus 92 s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~P~~~f 171 (261)
+++|+++||+||+.|+.|+|+|++||.||++ .++|||++||+..|+|||+||+++++|+++|||+|.++++++|+.+
T Consensus 1 ~~~~~~~Ln~~~~~El~A~~~Yl~~a~~~~~--~~~~~~a~~f~~~a~eE~~HA~~l~~~i~~~gg~~~~~~~~~~~~~- 77 (156)
T cd01055 1 SEKLEKALNEQINLELYSSYLYLAMAAWFDS--KGLDGFANFFRVQAQEEREHAMKFFDYLNDRGGRVELPAIEAPPSE- 77 (156)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cCChhHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeeCCCCCCCCcc-
Confidence 5789999999999999999999999999995 5999999999999999999999999999999999999999998754
Q ss_pred CccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHHhcc-CCchhhHH
Q 024844 172 DHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVG-KGHGLWHF 250 (261)
Q Consensus 172 ~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~r~g-~g~g~ylf 250 (261)
|+++.++++.+|.+|+.+++.|++++++|.+++|+.+++|++ ||+++|+++++++++++++++++| +|+|+|+|
T Consensus 78 ----~~~~~~~l~~al~~E~~~~~~~~~l~~~A~~~~D~~~~~~l~-~~l~~q~e~~~~~~~~l~~l~~~g~~~~~~~~~ 152 (156)
T cd01055 78 ----FESLLEVFEAALEHEQKVTESINNLVDLALEEKDYATFNFLQ-WFVKEQVEEEALARDILDKLKLAGDDGGGLYML 152 (156)
T ss_pred ----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHh
Confidence 467899999999999999999999999999999999999999 999999999999999999999999 78999999
Q ss_pred hHHh
Q 024844 251 DQML 254 (261)
Q Consensus 251 D~~L 254 (261)
|+.|
T Consensus 153 d~~l 156 (156)
T cd01055 153 DKEL 156 (156)
T ss_pred cccC
Confidence 9875
No 8
>PRK10635 bacterioferritin; Provisional
Probab=99.96 E-value=2.6e-28 Score=207.32 Aligned_cols=144 Identities=19% Similarity=0.165 Sum_probs=138.5
Q ss_pred cCcHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCC
Q 024844 90 KYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPS 169 (261)
Q Consensus 90 ~~s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~P~~ 169 (261)
+.++++++.||++++.||.|+++|+.+|.+|+ ++|+++++.+|+.+|.||++||++|++||+.+||.|+++++++|..
T Consensus 2 ~~~~~vi~~LN~~L~~El~Ai~QY~~ha~~~~--~~G~~~la~~~~~ea~eEm~HA~~l~eRIl~LgG~P~~~~~~~~~~ 79 (158)
T PRK10635 2 KGDVKIINYLNKLLGNELVAINQYFLHARMFK--NWGLMRLNDVEYHESIDEMKHADKYIERILFLEGIPNLQDLGKLNI 79 (158)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCC
Confidence 35889999999999999999999999999999 8999999999999999999999999999999999999999988775
Q ss_pred CCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHHhcc
Q 024844 170 EFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVG 242 (261)
Q Consensus 170 ~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~r~g 242 (261)
. .|+.++|+.+|.+|+.++..|++++++|.+.+|+.+.++++ |||.++.+|++++.+.+..++++|
T Consensus 80 g------~~v~eml~~dl~~E~~ai~~y~e~i~~a~~~~D~~s~~ll~-~iL~dEe~H~~~le~~l~~i~~~G 145 (158)
T PRK10635 80 G------EDVEEMLRSDLRLELEGAKDLREAIAYADSVHDYVSRDMMI-EILADEEGHIDWLETELDLIGKLG 145 (158)
T ss_pred C------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4 47899999999999999999999999999999999999999 999999999999999999999997
No 9
>TIGR00754 bfr bacterioferritin. Bacterioferritin is a homomultimer most species. In Neisseria gonorrhoeae, Synechocystis PCC6803, Magnetospirillum magnetotacticum, and Pseudomonas aeruginosa, two types of subunit are found in a heteromultimeric complex, with each species having one member of each type. At present, both types of subunit are including in this single model.
Probab=99.96 E-value=2.1e-27 Score=199.79 Aligned_cols=142 Identities=20% Similarity=0.203 Sum_probs=136.6
Q ss_pred cHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCCCC
Q 024844 92 EDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEF 171 (261)
Q Consensus 92 s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~P~~~f 171 (261)
+++++++||+||+.|+.++++|+.|+.||. +++++|++.||+.++.||++||++|++|++.+||.|.+.+++.|+..
T Consensus 4 ~~~~~~~LN~~l~~E~~a~~~Y~~~~~~~~--~~~~~g~a~~~~~~a~EE~~Ha~~laeri~~lGg~p~~~~i~~~~~~- 80 (157)
T TIGR00754 4 DPDVIQHLNKQLTNELTAINQYFLHARMQK--NWGLKELADHEYHESIDEMKHADEIIERILFLEGLPNLQDLGKLRIG- 80 (157)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCcCCCCCCC-
Confidence 789999999999999999999999999996 78999999999999999999999999999999999999999888754
Q ss_pred CccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHHhcc
Q 024844 172 DHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVG 242 (261)
Q Consensus 172 ~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~r~g 242 (261)
.++.++++.++++|+.++..|++++++|.+.+|+.|.+||+ ||+.++.++..++..+++.+.++|
T Consensus 81 -----~~~~e~l~~~l~~E~~~~~~~~e~i~~A~~~~D~~t~~ll~-~~i~eee~h~~~l~~~l~~~~~~g 145 (157)
T TIGR00754 81 -----ETVREMLEADLALELDVLNRLKEAIAYAEEVRDYVSRDLLE-EILEDEEEHIDWLETQLELIDKLG 145 (157)
T ss_pred -----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhH
Confidence 36889999999999999999999999999999999999999 999999999999999999999997
No 10
>PF00210 Ferritin: Ferritin-like domain; InterPro: IPR008331 Ferritin is one of the major non-haem iron storage proteins in animals, plants, and microorganisms []. It consists of a mineral core of hydrated ferric oxide, and a multi-subunit protein shell that encloses the former and assures its solubility in an aqueous environment. In animals the protein is mainly cytoplasmic and there are generally two or more genes that encode closely related subunits - in mammals there are two subunits which are known as H(eavy) and L(ight). In plants ferritin is found in the chloroplast []. This entry represents the main structural domain of ferritin. The domain is also found in other ferritin-like proteins such as members of the DNA protection during starvation (DPS) family and bacterioferritins.; GO: 0008199 ferric iron binding, 0006879 cellular iron ion homeostasis; PDB: 1N1Q_C 4DYU_E 2YJJ_D 2YJK_B 2VXX_B 3FVB_A 2WLU_A 2XGW_A 2WLA_A 1Z4A_D ....
Probab=99.94 E-value=1e-25 Score=181.65 Aligned_cols=137 Identities=36% Similarity=0.502 Sum_probs=127.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecc-----cCCCCCC
Q 024844 96 EAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHS-----IMQPPSE 170 (261)
Q Consensus 96 e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~-----I~~P~~~ 170 (261)
+++||++|+.|+.+++.|+.++.+|+ +.+++|+++||+++++++++|++++++|+..|||.|.... ++.|+.
T Consensus 1 i~~Ln~~l~~e~~~~~~y~~~~~~~~--~~~~~~l~~~~~~~a~e~~~h~~~l~e~i~~lgg~p~~~~~~~~~~~~~~~- 77 (142)
T PF00210_consen 1 IEALNEQLALELQASQQYLNMHWNFD--GPNFPGLAKFFQDQAEEEREHADELAERILMLGGKPSGSPVEIPEIPKPPE- 77 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-SSTSHHHHHHHHSSSS-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhc--CCCchhhHHHhHHHHHHHHHHHHHHHHHHhcCCCCCCCcHHHhhhhhcccc-
Confidence 57899999999999999999999999 7899999999999999999999999999999999666544 555554
Q ss_pred CCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHHhc
Q 024844 171 FDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMV 241 (261)
Q Consensus 171 f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~r~ 241 (261)
|.++.++|+.+++.|+.+...++++++.|.+.+|+.|.+|++ +|+.+|.+++.++++++++++|+
T Consensus 78 -----~~~~~~~l~~~l~~e~~~~~~~~~l~~~a~~~~D~~t~~~~~-~~l~~~~~~~~~l~~~l~~l~~~ 142 (142)
T PF00210_consen 78 -----WTDPREALEAALEDEKEIIEEYRELIKLAEKEGDPETADFLD-EFLEEEEKHIWMLQAHLTNLKRM 142 (142)
T ss_dssp -----SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhcC
Confidence 357999999999999999999999999999999999999997 99999999999999999999986
No 11
>cd00907 Bacterioferritin Bacterioferritin, ferritin-like diiron-binding domain. Bacterioferritins, also known as cytochrome b1, are members of a broad superfamily of ferritin-like diiron-carboxylate proteins. Similar to ferritin in architecture, Bfr forms an oligomer of 24 subunits that assembles to form a hollow sphere with 432 symmetry. Up to 12 heme cofactor groups (iron protoporphyrin IX or coproporphyrin III) are bound between dimer pairs. The role of the heme is unknown, although it may be involved in mediating iron-core reduction and iron release. Each subunit is composed of a four-helix bundle which carries a diiron ferroxidase center; it is here that initial oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical products, and storage of ferric-hydroxyphosphate at the core. Some bacterioferritins are composed of two subunit types, one conferring heme-binding ability (alpha) and the other (beta) best
Probab=99.94 E-value=4.3e-25 Score=183.20 Aligned_cols=143 Identities=21% Similarity=0.241 Sum_probs=135.5
Q ss_pred cHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCCCC
Q 024844 92 EDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEF 171 (261)
Q Consensus 92 s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~P~~~f 171 (261)
++++++.||++|+.|+.+++.|+.++.+|+ +.+++|+++||+.++.||++||+.+.+|++.+||.|.+.+++.|...
T Consensus 3 ~~~~~~~Ln~~l~~E~~a~~~Y~~~a~~~~--~~~~~~~~~~f~~~a~ee~~Ha~~lae~i~~lGg~p~~~~~~~~~~~- 79 (153)
T cd00907 3 DPKVIEALNKALTGELTAINQYFLHARMLE--DWGLEKLAERFRKESIEEMKHADKLIERILFLEGLPNLQRLGKLRIG- 79 (153)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcCCCCCcC-
Confidence 678999999999999999999999999998 67999999999999999999999999999999999999888777643
Q ss_pred CccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHHhccC
Q 024844 172 DHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVGK 243 (261)
Q Consensus 172 ~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~r~g~ 243 (261)
.+..++++.+++.|+.++..|++++++|.+.+|+.|.+|++ +++.++.+++..++.++..++++|+
T Consensus 80 -----~~~~~~l~~~l~~E~~~~~~y~~~~~~A~~~~D~~t~~~l~-~~~~~e~~h~~~l~~~l~~~~~~g~ 145 (153)
T cd00907 80 -----EDVPEMLENDLALEYEAIAALNEAIALCEEVGDYVSRDLLE-EILEDEEEHIDWLETQLDLIDKMGL 145 (153)
T ss_pred -----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCH
Confidence 25789999999999999999999999999999999999999 9999999999999999999999983
No 12
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain. Rubrerythrin domain is a nonheme iron binding domain found in many air-sensitive bacteria and archaea and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The homodimeric rubrerythrin protein contains a binuclear metal center located within a four helix bundle. Many, but not all, rubrerythrin proteins have a second domain with a rubredoxin-like hexacoordinated iron center. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system but its function is still poorly understood.
Probab=99.90 E-value=1.6e-22 Score=166.12 Aligned_cols=131 Identities=20% Similarity=0.238 Sum_probs=121.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCCCCCcc
Q 024844 95 CEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEFDHA 174 (261)
Q Consensus 95 ~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~P~~~f~~~ 174 (261)
..+.||+.+..|+.++++|+.|+.|++ +.|++|+++||+.+|.+|+.||.++++|++.+||.|. .|+..
T Consensus 2 t~~~L~~a~~~E~~a~~~Y~~~a~~a~--~~g~~~~a~~f~~~a~eE~~HA~~~~~~l~~l~g~~~-----~~~~~---- 70 (134)
T cd01041 2 TEKNLLAAFAGESQARNRYTYFAEKAR--KEGYEQIARLFRATAENEKEHAKGHFKLLKGLGGGDT-----GPPIG---- 70 (134)
T ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-----CCCCC----
Confidence 357899999999999999999999999 5699999999999999999999999999999999999 55544
Q ss_pred ccCCHHHHHHHHHHHHHH-HHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHH
Q 024844 175 EKGDALYAMELALSLEKL-TNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQL 238 (261)
Q Consensus 175 e~~d~lea~e~AL~lEk~-vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L 238 (261)
++++.+.|+.++.+|+. ++..|.+++++|.+++|+.+.+|++ +++.++.+|.+++.+.+.+|
T Consensus 71 -~~~~~~~l~~~~~~E~~e~~~~y~~~~~~A~~e~d~~~~~~f~-~i~~~E~~H~~~l~~~l~~l 133 (134)
T cd01041 71 -IGDTLENLKAAIAGETYEYTEMYPEFAEVAEEEGFKEAARSFE-AIAEAEKVHAERYKKALENL 133 (134)
T ss_pred -cchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHH-HHHHHHHHHHHHHHHHhhcc
Confidence 35789999999999995 8899999999999999999999999 99999999999999998765
No 13
>cd01052 DPSL DPS-like protein, ferritin-like diiron-binding domain. DPSL (DPS-like). DPSL is a phylogenetically distinct class within the ferritin-like superfamily, and similar in many ways to the DPS (DNA Protecting protein under Starved conditions) proteins. Like DPS, these proteins are expressed in response to oxidative stress, form dodecameric cage-like particles, preferentially utilize hydrogen peroxide in the controlled oxidation of iron, and possess a short N-terminal extension implicated in stabilizing cellular DNA. This domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. These proteins are distantly related to bacterial ferritins which assemble 24 monomers, each of which have a four-helix bundle with a fifth shorter helix at the C terminus and a diiron (ferroxidase) center. Ferritins contain a center where oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical
Probab=99.89 E-value=1.1e-21 Score=161.88 Aligned_cols=135 Identities=21% Similarity=0.242 Sum_probs=121.9
Q ss_pred cHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccc-------
Q 024844 92 EDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSI------- 164 (261)
Q Consensus 92 s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I------- 164 (261)
.+++++.||++++.|+.++++|+.++.+++ +.++++++++|.+++.||++||+++.+|++.+||.|.....
T Consensus 4 ~~~~~~~Ln~~la~e~~~~~~y~~~~~~~~--g~~f~~l~~~~~~~~~ee~~Had~laEri~~lGg~p~~~~~~~~~~~~ 81 (148)
T cd01052 4 VDELIELLNKAFADEWLAYYYYTILAKHVK--GPEGEGIKEELEEAAEEELNHAELLAERIYELGGTPPRDPKDWYEISG 81 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHHHHhc
Confidence 367899999999999999999999999999 67899999999999999999999999999999999998653
Q ss_pred ---CCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHH
Q 024844 165 ---MQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYV 235 (261)
Q Consensus 165 ---~~P~~~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l 235 (261)
+.|.. ...++.++++.++..|+.+++.+++++++|.. +|+.|++|++ +++.+|.+|++++.++|
T Consensus 82 ~~~~~~~~-----~~~~~~~~l~~~~~~e~~~i~~~~~~~~~a~~-~D~~t~~ll~-~~l~de~~h~~~~~~~~ 148 (148)
T cd01052 82 CKCGYLPP-----DPPDVKGILKVNLKAERCAIKVYKELCDMTHG-KDPVTYDLAL-AILNEEIEHEEDLEELL 148 (148)
T ss_pred ccccCCCC-----CCccHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CChHHHHHHH-HHHHHHHHHHHHHHhhC
Confidence 22221 22578999999999999999999999999975 9999999999 99999999999998764
No 14
>COG2193 Bfr Bacterioferritin (cytochrome b1) [Inorganic ion transport and metabolism]
Probab=99.87 E-value=1.3e-20 Score=157.56 Aligned_cols=143 Identities=20% Similarity=0.219 Sum_probs=136.7
Q ss_pred CcHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCCC
Q 024844 91 YEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSE 170 (261)
Q Consensus 91 ~s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~P~~~ 170 (261)
-.+++++.||+++..||.|.++|+.++..++ |||+..++++|+++|.+|+.||++++++|+..+|.|+++++.+-...
T Consensus 3 G~~~Vi~~LN~~L~~EL~ainQYflHsrM~~--~WG~~~L~~~~~~esi~Em~HAd~lieRIlfLeG~Pnlq~~~~l~iG 80 (157)
T COG2193 3 GDPKVIRLLNEALGLELAAINQYFLHSRMYK--NWGLTKLAAHEYHESIEEMKHADQLIERILFLEGLPNLQDLGKLRIG 80 (157)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CcChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcccccccccC
Confidence 4589999999999999999999999999999 89999999999999999999999999999999999999998875543
Q ss_pred CCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHHhcc
Q 024844 171 FDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVG 242 (261)
Q Consensus 171 f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~r~g 242 (261)
.++.++++..|.+|..+...|.+.+..|.+.+||.+++.++ ..|.++.||++++.+.+..+.++|
T Consensus 81 ------~tv~E~L~~DL~~E~~a~~~lk~~i~~~e~~~Dyvsrdl~~-~iL~deEEHid~LetqL~li~~iG 145 (157)
T COG2193 81 ------ETVKEMLEADLALEYEARDALKEAIAYCEEVQDYVSRDLLE-EILADEEEHIDWLETQLDLIAKIG 145 (157)
T ss_pred ------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHH-HHHcchHHHHHHHHHHHHHHHHHh
Confidence 57899999999999999999999999999999999999999 999999999999999999999997
No 15
>cd01046 Rubrerythrin_like rubrerythrin-like, diiron-binding domain. Rubrerythrin-like domain, similar to rubrerythrin, a nonheme iron binding domain found in many air-sensitive bacteria and archaea, and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system. The rubrerythrin protein has two domains, a binuclear metal center located within a four-helix bundle of the rubrerythrin domain, and a rubredoxin domain. The Rubrerythrin-like domains in this CD are singular domains (no C-terminus rubredoxin domain) and are phylogenetically distinct from rubrerythrin domains of rubrerythrin-rubredoxin proteins.
Probab=99.81 E-value=9.7e-19 Score=142.46 Aligned_cols=121 Identities=19% Similarity=0.184 Sum_probs=111.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCCCCCcc
Q 024844 95 CEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEFDHA 174 (261)
Q Consensus 95 ~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~P~~~f~~~ 174 (261)
+++.||.||+.|+.++++|+.|+.|++ ..|++|+|+||+.+|.+|+.||+++.+++ |+ | |
T Consensus 2 ~~~~L~~a~~~E~~a~~~Y~~~a~~a~--~eG~~~~A~~f~~~a~eE~~HA~~~~~~l---~~------i--~------- 61 (123)
T cd01046 2 LEEDLEANFKGETTEVGMYLAMARVAQ--REGYPEVAEELKRIAMEEAEHAARFAELL---GK------V--S------- 61 (123)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHHHHHHHHHHH---hc------C--c-------
Confidence 678999999999999999999999999 56999999999999999999999999966 22 1 1
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHH
Q 024844 175 EKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQL 238 (261)
Q Consensus 175 e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L 238 (261)
+|+.++|+.++.+|+.++..|.+++++|.+++|+.+.+||. +.++..-.|.+.+...+...
T Consensus 62 --~~~~~~le~a~~~E~~~~~~~~~~~~~A~~egd~~~~~~~~-~~~~~E~~H~~~~~~~l~~~ 122 (123)
T cd01046 62 --EDTKENLEMMLEGEAGANEGKKDAATEAKAEGLDEAHDFFH-EAAKDEARHGKMLKGLLERY 122 (123)
T ss_pred --ccHHHHHHHHHHhHHHHHHhHHHHHHHHHHcCCHHHHHHHH-HHHHHHHHHHHHHHHHHhhc
Confidence 36799999999999999999999999999999999999999 99999999999999888753
No 16
>PRK13456 DNA protection protein DPS; Provisional
Probab=99.68 E-value=3.1e-15 Score=129.87 Aligned_cols=141 Identities=17% Similarity=0.216 Sum_probs=123.7
Q ss_pred cHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccC--C-CC
Q 024844 92 EDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIM--Q-PP 168 (261)
Q Consensus 92 s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~--~-P~ 168 (261)
.+++++.||+.+..|+.+.|.|..+++... ++.-++++.||.+.+.||+.||+.|.++|.+.||.|.+.+-+ . ..
T Consensus 18 ~~~li~lLn~AlA~E~~a~~~Y~~~a~~~~--G~~~e~V~e~le~a~~EEl~HA~~lAeRI~qLGG~P~~~p~~~~~ls~ 95 (186)
T PRK13456 18 VDKLVELLVKNAAAEFTTYYYYTILRAHLI--GLEGEGLKEIAEDARLEDRNHFEALVPRIYELGGKLPRDIREFHDISA 95 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHhhhhc
Confidence 468899999999999999999999999999 778999999999999999999999999999999999987663 0 00
Q ss_pred CCC-Cccc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHH
Q 024844 169 SEF-DHAE-KGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVS 236 (261)
Q Consensus 169 ~~f-~~~e-~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~ 236 (261)
..+ .-++ ..|+.++++..|.-|+.++..|+++++.+. .+||.|++.++ .+|.++++|..+|.++|.
T Consensus 96 ~~~~~~p~d~tdv~~mL~~~L~AEr~AI~~Y~eii~~~~-~kDp~T~~l~~-~IL~dE~eH~~dl~~lL~ 163 (186)
T PRK13456 96 CPDAYLPENPTDPKEILKVLLEAERCAIRTYTEICDMTA-GKDPRTYDLAL-AILQEEIEHEAWFSELLG 163 (186)
T ss_pred CccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCccHHHHHH-HHHHHHHHHHHHHHHHHh
Confidence 111 0012 247999999999999999999999999998 67999999999 799999999999999986
No 17
>cd01043 DPS DPS protein, ferritin-like diiron-binding domain. DPS (DNA Protecting protein under Starved conditions) domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Some DPS proteins nonspecifically bind DNA, protecting it from cleavage caused by reactive oxygen species such as the hydroxyl radicals produced during oxidation of Fe(II) by hydrogen peroxide. These proteins assemble into dodecameric structures, some form DPS-DNA co-crystalline complexes, and possess iron and H2O2 detoxification capabilities. Expression of DPS is induced by oxidative or nutritional stress, including metal ion starvation. Members of the DPS family are homopolymers formed by 12 four-helix bundle subunits that assemble with 23 symmetry into a hollow shell. The DPS ferroxidase site is unusual in that it is not located in a four-helix bundle as in ferritin, but is shared by 2-fold symmetry-related subunits providing the iron ligands. Many DPS sequences (e.g., E. coli) disp
Probab=99.35 E-value=3.2e-11 Score=99.09 Aligned_cols=129 Identities=20% Similarity=0.161 Sum_probs=113.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecc--------cCCCCC
Q 024844 98 AINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHS--------IMQPPS 169 (261)
Q Consensus 98 aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~--------I~~P~~ 169 (261)
.||..+..++..+..|..+.-+.. +.++..++.+|.+.++++++|+..+.+++...||.|..+. ++.++.
T Consensus 2 ~Ln~~lA~~~~~~~~~~~~HW~v~--G~~f~~lh~~l~e~~~~~~~~~D~lAERi~~lgg~P~~~~~~~~~~s~l~~~~~ 79 (139)
T cd01043 2 ALNQLLADLYVLYLKLKNYHWNVK--GPNFFALHELFEELYDELREAIDEIAERIRALGGKPLGTLKEYAELSTIKEEPA 79 (139)
T ss_pred HHHHHHHHHHHHHHHHhCCCcCcc--CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHhHCCCCCCCC
Confidence 589999999999999998777777 7899999999999999999999999999999999998764 554442
Q ss_pred CCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHH
Q 024844 170 EFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKY 234 (261)
Q Consensus 170 ~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~ 234 (261)
.+ .++.++++..+..|..+...+++.++.|.+.+|+.|.++++ .++.+..+++-.+..+
T Consensus 80 ~~-----~~~~~~l~~~~~~~~~~i~~~~~~i~~a~~~~D~~t~~ll~-~il~~~ek~~w~l~a~ 138 (139)
T cd01043 80 GV-----LSAKEMVAELLEDYETLIEELREAIELADEAGDPATADLLT-EIIRELEKQAWMLRAH 138 (139)
T ss_pred CC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH-HHHHHHHHHHHHHHhc
Confidence 22 35789999999999999999999999999999999999999 8999988888777654
No 18
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyub
Probab=99.29 E-value=1.6e-10 Score=88.43 Aligned_cols=123 Identities=25% Similarity=0.300 Sum_probs=106.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecc-----cCCCCCCCC
Q 024844 98 AINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHS-----IMQPPSEFD 172 (261)
Q Consensus 98 aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~-----I~~P~~~f~ 172 (261)
.||..+..|+.+...|..++..++ .+++..+|...+.+|+.|++.+.+++..+||.+.... ...+..
T Consensus 2 ~L~~~~~~E~~a~~~y~~~~~~~~-----~~~~~~~~~~~a~~E~~H~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~--- 73 (130)
T cd00657 2 LLNDALAGEYAAIIAYGQLAARAP-----DPDLKDELLEIADEERRHADALAERLRELGGTPPLPPAHLLAAYALPK--- 73 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHhcccCC---
Confidence 689999999999999999999876 5789999999999999999999999999999987543 111111
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHH
Q 024844 173 HAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKY 234 (261)
Q Consensus 173 ~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~ 234 (261)
...+..+++..++..|......+..+.+.+. |+.+.+++. +++.++..|.+.+..+
T Consensus 74 --~~~~~~~~l~~~~~~E~~~~~~y~~~~~~~~---d~~~~~~~~-~~~~~E~~H~~~~~~~ 129 (130)
T cd00657 74 --TSDDPAEALRAALEVEARAIAAYRELIEQAD---DPELRRLLE-RILADEQRHAAWFRKL 129 (130)
T ss_pred --CccCHHHHHHHHHHHHHHHHHHHHHHHHhcC---ChHHHHHHH-HHHHHHHHHHHHHHhh
Confidence 2257889999999999999999998888764 999999999 9999999999988765
No 19
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain. This uncharacterized bacterial protein family has a ferritin-like domain similar to that of the manganese catalase protein of Lactobacillus plantarum and the bll3758 protein of Bradyrhizobium japonicum. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=99.28 E-value=4e-10 Score=94.27 Aligned_cols=138 Identities=13% Similarity=0.088 Sum_probs=113.4
Q ss_pred CcHHHHHHHHHHhH---HHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCC
Q 024844 91 YEDECEAAINEQIN---VEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQP 167 (261)
Q Consensus 91 ~s~~~e~aLNeQIn---~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~P 167 (261)
-+++.-..|++|+. .|+.+..+|+..+.-.. . +.+.+++.|...|.+|++|++.|.+++.++||.+.+......
T Consensus 10 ~~~~~~~~~~~~~~g~~~E~~ai~~Y~y~~~~~~--~-~~~~~k~~f~~lA~eE~~H~~~l~~~i~~lgg~p~~~~~~~~ 86 (154)
T cd07908 10 PNPRYAELLLDDYAGTNSELTAISQYIYQHLISE--E-KYPEIAETFLGIAIVEMHHLEILGQLIVLLGGDPRYRSSSSD 86 (154)
T ss_pred CChHHHHHHHHHhCCcchHHHHHHHHHHHHHHcc--C-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhccc
Confidence 45677788999988 99999999999988776 3 679999999999999999999999999999999875432110
Q ss_pred CC-CCCc---cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHH
Q 024844 168 PS-EFDH---AEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYV 235 (261)
Q Consensus 168 ~~-~f~~---~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l 235 (261)
.. .|.. ....+..++++.++..|+.....|.++.+. ..|+.+.+.|+ .++.++.+|++.|.+++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~L~~~~~~E~~ai~~Y~~~~~~---~~d~~~r~ll~-~I~~eE~~H~~~L~~~l 154 (154)
T cd07908 87 KFTYWTGKYVNYGESIKEMLKLDIASEKAAIAKYKRQAET---IKDPYIRALLN-RIILDEKLHIKILEELL 154 (154)
T ss_pred cCCcCCccccCCccCHHHHHHHHHHHHHHHHHHHHHHHHH---cCCHHHHHHHH-HHHHHHHHHHHHHHhhC
Confidence 00 0000 012478899999999999999999998884 58999999999 89999999999998753
No 20
>cd01051 Mn_catalase Manganese catalase, ferritin-like diiron-binding domain. Manganese (Mn) catalase is a member of a broad superfamily of ferritin-like diiron enzymes. While many diiron enzymes catalyze dioxygen-dependent reactions, manganese catalase performs peroxide-dependent oxidation-reduction. Catalases are important antioxidant metalloenzymes that catalyze disproportionation of hydrogen peroxide, forming dioxygen and water. Manganese catalase, a nonheme type II catalase, contains a binuclear manganese cluster that catalyzes the redox dismutation of hydrogen peroxide, interconverting between dimanganese(II) [(2,2)] and dimanganese(III) [(3,3)] oxidation states during turnover. Mn catalases are found in a broad range of microorganisms in microaerophilic environments, including the mesophilic lactic acid bacteria (e.g., Lactobacillus plantarum) and bacterial and archaeal thermophiles (e.g., Thermus thermophilus and Pyrobaculum caldifontis). L. plantarum and T. thermophilus holoenz
Probab=98.92 E-value=1.3e-07 Score=80.51 Aligned_cols=135 Identities=13% Similarity=0.137 Sum_probs=110.6
Q ss_pred cHHHHHHHHHHhH---HHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCC
Q 024844 92 EDECEAAINEQIN---VEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPP 168 (261)
Q Consensus 92 s~~~e~aLNeQIn---~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~P~ 168 (261)
++....+|.+|+. -|+.+..+|+..+..++ ..+.+...|...+.||+.|++.|.+.+.+.||.+.-.+-.
T Consensus 18 ~p~~A~~l~~~~gG~~gEl~ai~qYl~q~~~~~----~~~~~~d~l~~ia~eEm~H~e~la~~I~~Lg~~~~g~pw~--- 90 (156)
T cd01051 18 DPRFAKLLQEQLGGAFGELSAAMQYLFQSFNFR----EDPKYRDLLLDIGTEELSHLEMVATLIAMLLKDSQGVPWT--- 90 (156)
T ss_pred CHHHHHHHHHHhCCccHHHHHHHHHHHHHhhcC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcCC---
Confidence 3444556666654 69999999999999994 3589999999999999999999999999999843321111
Q ss_pred CCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHH
Q 024844 169 SEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQL 238 (261)
Q Consensus 169 ~~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L 238 (261)
..|.. ..+++...++..+..|+.....+.++++.+ +|+.+.+.|. +++.+.+.|...+...+..|
T Consensus 91 ~~yv~-~~~d~~~~L~~ni~aE~~Ai~~Y~~l~~~~---~Dp~v~~~l~-~I~~rE~~H~~~f~~~l~~~ 155 (156)
T cd01051 91 AAYIQ-SSGNLVADLRSNIAAESRARLTYERLYEMT---DDPGVKDTLS-FLLVREIVHQNAFGKALESL 155 (156)
T ss_pred CcccC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHc---CCHHHHHHHH-HHHHHHHHHHHHHHHHHHhc
Confidence 11211 136899999999999999999999999886 5999999999 89999999999999998875
No 21
>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria (Ferritin_like_AB). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. This family includes unknown or hypothetical proteins which were sequenced from mostly anaerobic or microaerophilic metal-metabolizing and/or nitrogen-fixing microbes. The family includes sequences from ferric-, sulfate-, and arsenic-reducing bacteria, Geobacter, Magnetospirillum, Desulfovibrio, and Desulfitobacterium. Also included are several nitrogen-fixing endosymbiotic bacteria, Rhizobium, Mesorhizobium, and Bradyrhizobium; also phototrophic purple nonsulfur bacteria, Rhodobacter and Rhodopseudomonas, as well as, obligate thermophiles, Thermotoga, Thermoanaerobacter, and Pyrococcus. The conserved residues of a diiron center are present in this uncharacterized domain.
Probab=98.92 E-value=3.1e-08 Score=78.83 Aligned_cols=129 Identities=24% Similarity=0.242 Sum_probs=101.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcC--CeeeecccCCCCCCC---
Q 024844 97 AAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRG--GKVKLHSIMQPPSEF--- 171 (261)
Q Consensus 97 ~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RG--G~v~l~~I~~P~~~f--- 171 (261)
++||..|..|..+...|..++..++. +++..+|...+.+|+.|++.|...+..+| +.|.+..-.......
T Consensus 1 ~~l~~a~~~E~~~~~~Y~~~a~~~~~-----~~~~~~~~~la~eE~~H~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (139)
T cd01045 1 EILALAIKMEEEAAEFYLELAEKAKD-----PELKKLFEELAEEEKEHAERLEELYEKLFGEELPELEPEDYKEEVEEEP 75 (139)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhHCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCcccHHHHHHHHhhhh
Confidence 36899999999999999999998873 38999999999999999999999999997 333322110000000
Q ss_pred ----CccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHH
Q 024844 172 ----DHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKY 234 (261)
Q Consensus 172 ----~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~ 234 (261)
......+..++++.++..|+.....+..+.+ ...|+.+.+.+. .++++..+|...+.++
T Consensus 76 ~~~~~~~~~~~~~~~l~~a~~~E~~~~~~Y~~~~~---~~~d~~~~~~~~-~l~~~E~~H~~~l~~~ 138 (139)
T cd01045 76 EFKKALESLMDPLEALRLAIEIEKDAIEFYEELAE---KAEDPEVKKLFE-ELAEEERGHLRLLEEL 138 (139)
T ss_pred hHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHH---HcCCHHHHHHHH-HHHHHHHHHHHHHHHh
Confidence 0012257899999999999999988877775 457999999999 9999999999998764
No 22
>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin []. The physiological role of Rr has not been identified. The 3-D structure of Desulphovibrio vulgaris rubrerythrin has been solved []. The structure reveals a tetramer of two-domain subunits. In each monomer, the N-terminal 146 residues form a four-alpha-helix bundle containing the diiron-oxo site (centre I), and the C-terminal 45 residues form a rubredoxin-like FeS4 domain.; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1VJX_A 2FZF_A 3SID_B 3QHC_B 3QHB_B 4DI0_A 1J30_B 1YV1_A 1YUZ_B 1YUX_B ....
Probab=98.77 E-value=2.8e-07 Score=73.48 Aligned_cols=129 Identities=23% Similarity=0.281 Sum_probs=103.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccC-------CCCC
Q 024844 97 AAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIM-------QPPS 169 (261)
Q Consensus 97 ~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~-------~P~~ 169 (261)
+.|+..|..|..+...|..++.-+..+ + |-+.+.|...|.+|..|+..|.+.+.++++.+...... .|..
T Consensus 1 e~L~~A~~~E~~~~~~Y~~~a~~~~~~--~-p~~~~~f~~lA~~E~~H~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (137)
T PF02915_consen 1 EILEMAIKMELEAAKFYRELAEKAKDE--G-PELKELFRRLAEEEQEHAKFLEKLLRKLGPGEEPPFLEEKVEYSFFPKL 77 (137)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT--T-HHHHHHHHHHHHHHHHHHHHHHHHHCHCSTTHHTHCHCCCCCHCCCCTC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhhc--c-cHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchhhhhhhhhhcchh
Confidence 468899999999999999999999954 6 88999999999999999999999999998765433111 1111
Q ss_pred CCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHH
Q 024844 170 EFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKY 234 (261)
Q Consensus 170 ~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~ 234 (261)
.... ..++..+++.++..|+.....+..+ |....|+....+++ ++..+.-+|.+.+..+
T Consensus 78 ~~~~--~~~~~~~l~~a~~~E~~~~~~Y~~~---a~~~~~~~~~~~~~-~l~~~E~~H~~~l~~l 136 (137)
T PF02915_consen 78 EEET--DENLEEALEMAIKEEKDAYEFYAEL---ARKAPDPEIRKLFE-ELAKEEKEHEDLLEKL 136 (137)
T ss_dssp CSSH--HHHHHHHHHHHHHHHHTHHHHHHHH---HHHTTSHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred hhhh--hHHHHHHHHHHHHHHHHHHHHHHHH---HHHCCCHHHHHHHH-HHHHHHHHHHHHHHHh
Confidence 1111 1257899999999998887777766 45678999999999 9999999999988764
No 23
>PRK09448 DNA starvation/stationary phase protection protein Dps; Provisional
Probab=98.64 E-value=3.2e-06 Score=72.24 Aligned_cols=132 Identities=9% Similarity=0.057 Sum_probs=111.1
Q ss_pred cHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeee--------cc
Q 024844 92 EDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKL--------HS 163 (261)
Q Consensus 92 s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l--------~~ 163 (261)
.+++.+.||..+..++.....|..+.-+-. +..+..+..+|.+++.++++|+..+.+++...||.|.- ..
T Consensus 20 ~~~~~~~Ln~~LA~~~~l~~k~~~~hW~v~--G~~f~~lH~~lee~~~~~~~~~D~iAERi~~lGg~p~~t~~e~~~~s~ 97 (162)
T PRK09448 20 KKATIELLNQQLAQFIDLSLITKQAHWNMK--GANFIAVHEMLDGFRTALEDHLDTMAERAVQLGGVALGTTQVVASKTP 97 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhcc--CCCHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCCCCHHHHHHhCC
Confidence 356889999999999999999998887777 67899999999999999999999999999999999862 33
Q ss_pred cCC-CCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHH
Q 024844 164 IMQ-PPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYV 235 (261)
Q Consensus 164 I~~-P~~~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l 235 (261)
|+. |... -+..++++..++.-..+...++..+ .+++|+.|.+++. .++.+..+.+-.|+.++
T Consensus 98 i~e~~~~~------~~~~~~l~~l~~d~~~~~~~~r~~i---~e~~D~~T~dll~-~~~~~~eK~~WmL~a~l 160 (162)
T PRK09448 98 LKSYPLDI------HNVQDHLKALADRYAIVANDVRKAI---DEAGDEDTADIFT-AASRDLDKFLWFIEAHI 160 (162)
T ss_pred CCCCCCCC------CCHHHHHHHHHHHHHHHHHHHHHHH---hhcCChhHHHHHH-HHHHHHHHHHHHHHHhc
Confidence 333 2222 2457899999998889999999888 7889999999999 89988888887777664
No 24
>COG2406 Protein distantly related to bacterial ferritins [General function prediction only]
Probab=98.56 E-value=8e-06 Score=68.93 Aligned_cols=138 Identities=19% Similarity=0.257 Sum_probs=108.9
Q ss_pred cHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeee-----ecccC-
Q 024844 92 EDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVK-----LHSIM- 165 (261)
Q Consensus 92 s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~-----l~~I~- 165 (261)
.+++++.|-+....|+.+.|-|...+.... +..=.|.-.|....-.|-+.|++.+..++-..||.+- +..|.
T Consensus 15 ~~kli~~Llka~AaE~tt~YYYtilr~~l~--Gle~e~~keiae~Ar~E~r~H~e~i~~Ri~elg~~~Prd~~~l~dISg 92 (172)
T COG2406 15 KDKLIELLLKAAAAEWTTYYYYTILRYALK--GLEGEGIKEIAEEAREEDRKHFELIAPRIYELGGDLPRDMKKLHDISG 92 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHhhcC
Confidence 356788888889999999999999988766 3333444455555566667899999999999999863 33333
Q ss_pred --CCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHH
Q 024844 166 --QPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVS 236 (261)
Q Consensus 166 --~P~~~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~ 236 (261)
.|... .+|.|+.+.++.+++.|+.....+.++..+ ...+|+.|.+.-+ .+|.|+++|..++..++.
T Consensus 93 C~~a~LP---edp~D~~~~l~vlv~AE~CAir~ykeic~~-T~GkDprTyeLa~-~IL~eEi~hr~~~~~ll~ 160 (172)
T COG2406 93 CKPAYLP---EDPYDIDEILAVLVKAERCAIRAYKEICNL-TAGKDPRTYELAE-AILREEIEHRTWFLELLG 160 (172)
T ss_pred CCCCCCC---CCccCHHHHHHHHHHHHHHHHHHHHHHHcc-ccCCCcchHHHHH-HHHHHHHHHHHHHHHHhc
Confidence 33221 234689999999999999999999999887 4679999999999 999999999999987664
No 25
>COG0783 Dps DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]
Probab=98.27 E-value=9.5e-05 Score=63.14 Aligned_cols=133 Identities=18% Similarity=0.151 Sum_probs=104.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeee--------eccc
Q 024844 93 DECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVK--------LHSI 164 (261)
Q Consensus 93 ~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~--------l~~I 164 (261)
.++.+.||+++..=+......+...-+-. +..+--+..+|.++.++-.+|...+.+++...||.|. ...|
T Consensus 14 ~~~~~~Ln~~lAd~~~Ly~k~~~~HWnV~--G~~F~~lHe~~ee~y~el~~~~DeiAERi~~LGg~p~~t~~~~~~~s~i 91 (156)
T COG0783 14 KKIAEALNQLLADLYVLYLKTHNYHWNVK--GPNFFALHEKLEELYEELAEHVDEIAERIRALGGVPLGTLSEYLKLSSI 91 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccee--CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcccHHHHHHhCCC
Confidence 67888999887765554444443332222 5677778999999999999999999999999999986 2334
Q ss_pred CCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHH
Q 024844 165 MQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKY 234 (261)
Q Consensus 165 ~~P~~~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~ 234 (261)
+..+.+ .++.++++....--+.+.+.+++.+.+|.+.+|+.|.+++. ..+.+..+.+=.|+-+
T Consensus 92 ke~~~~------~~~~~~l~~l~~~~~~l~~~~r~~~~~a~e~gD~~Tadl~~-~~~~~~EK~~Wml~a~ 154 (156)
T COG0783 92 KEEPGD------YTAREMLKELVEDYEYLIKELRKGIELADEAGDEVTADLLT-DIIRELEKTLWMLRAT 154 (156)
T ss_pred cccCCC------CCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHH-HHHHHHHHHHHHHHHh
Confidence 333322 46899999999999999999999999999999999999999 8888877766555443
No 26
>cd01044 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain. Ferritin-like N-terminal domain present in an uncharacterized family of proteins found in bacteria and archaea. These proteins also have a C-terminal CCC1-like transmembrane domain and are thought to be involved in iron and/or manganese transport. This domain has the conserved residues of a diiron center found in other ferritin-like proteins.
Probab=98.25 E-value=1.2e-05 Score=65.22 Aligned_cols=121 Identities=16% Similarity=0.119 Sum_probs=93.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCCCCCc-c-c
Q 024844 98 AINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEFDH-A-E 175 (261)
Q Consensus 98 aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~P~~~f~~-~-e 175 (261)
.+|+.++.|..+..+|..++..... +...+.|...|++|++|++-+-+++..+|+.+. .+....-+.. . .
T Consensus 2 ~~~~~~~~E~~~~~~Y~~la~~~~~-----~~~k~~f~~lA~~E~~H~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~ 73 (125)
T cd01044 2 RLRKFQKDEITEAAIYRKLAKREKD-----PENREILLKLAEDERRHAEFWKKFLGKRGVPPP---RPKLKIFFYKLLAR 73 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC---CccHHHHHHHHHHH
Confidence 4789999999999999999998763 458999999999999999999999999998875 1100000000 0 0
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHH
Q 024844 176 KGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVS 236 (261)
Q Consensus 176 ~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~ 236 (261)
..++..+++.+...|+.....|.++... ...+. ..+.|+.+|++.|.++++
T Consensus 74 ~~g~~~~l~~~~~~E~~ai~~Y~~~~~~---------~~~~~-~Ii~dE~~H~~~L~~~~~ 124 (125)
T cd01044 74 IFGPTFVLKLLERGEERAIEKYDRLLEE---------RPELK-EIIADELEHEEVLIALLD 124 (125)
T ss_pred HHhHHHHHHHHHHhHHhhHhhHHhhhhh---------hHHHH-HHHHHHHHHHHHHHHhhh
Confidence 1234578888889999999999988776 44666 789999999999988764
No 27
>COG1633 Uncharacterized conserved protein [Function unknown]
Probab=98.18 E-value=0.00021 Score=61.98 Aligned_cols=139 Identities=18% Similarity=0.179 Sum_probs=112.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeec---------c
Q 024844 93 DECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLH---------S 163 (261)
Q Consensus 93 ~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~---------~ 163 (261)
..++.+|+..|..|..|...|..++..++.. -+.+.|...+.+|+.|..+|-+.+-+++++..-. .
T Consensus 23 ~~~~e~L~~Ai~~E~eA~~fY~~lae~~~~~-----~~rk~~~~la~eE~~H~~~f~~l~~~~~~~~~~~~~~~~~~~~~ 97 (176)
T COG1633 23 LSIEELLAIAIRGELEAIKFYEELAERIEDE-----EIRKLFEDLADEEMRHLRKFEKLLEKLTPKEVSSEEEEGEIESE 97 (176)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhcCCH-----hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhcchhhh
Confidence 4678999999999999999999999999964 5899999999999999999999999999887211 0
Q ss_pred cCCCCCC---CCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHHh
Q 024844 164 IMQPPSE---FDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRM 240 (261)
Q Consensus 164 I~~P~~~---f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~r 240 (261)
+-.+... +... .+..++++.|...|+...+-|..+... ..|.....++. +++++.-.|...+...++.+.+
T Consensus 98 ~~~~~~~~~~~~~~--~~~~~~I~~a~~~E~~t~~~Y~~~~~~---~~~~~~~~~~~-~~a~~E~~H~~~l~~~~~~~~~ 171 (176)
T COG1633 98 ILEYLQPGKEMEKS--VSYLEAIEAAMEAEKDTIEFYEELLDE---LVNEEAKKLFK-TIADDEKGHASGLLSLYNRLTS 171 (176)
T ss_pred hccccCcccccccc--hhHHHHHHHHHHHHHHHHHHHHHHHHH---ccCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhc
Confidence 1111111 1111 478999999999999999999888764 46777888888 8999999999999888888776
Q ss_pred cc
Q 024844 241 VG 242 (261)
Q Consensus 241 ~g 242 (261)
.+
T Consensus 172 ~~ 173 (176)
T COG1633 172 TG 173 (176)
T ss_pred cc
Confidence 54
No 28
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.88 E-value=0.00049 Score=73.68 Aligned_cols=138 Identities=12% Similarity=0.090 Sum_probs=104.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCCCC-
Q 024844 93 DECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEF- 171 (261)
Q Consensus 93 ~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~P~~~f- 171 (261)
+...+.|--.|.+|-..--.|..++.-.. =+.+.++|...|++|++|.+.|.+...+--.. .-.....+...+
T Consensus 859 ~~~~eil~~Ai~mE~~g~~FY~~~A~~a~-----~~~~K~lF~~LA~eE~~H~~~l~~~~~~~~~~-~~~~~~~~~~~~~ 932 (1006)
T PRK12775 859 AAALEAIRTAFEIELGGMAFYARAAKETS-----DPVLKELFLKFAGMEQEHMATLARRYHAAAPS-PTEGFKIERAAIM 932 (1006)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-cccccccchhhhh
Confidence 55678999999999999999999999655 46899999999999999999998776431000 000000000000
Q ss_pred Cc--cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChh-HHHHhHHhhHHHHHHHHHHHHHHHHHHHh
Q 024844 172 DH--AEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQ-MAEFVESEFLGEQVEAINKIAKYVSQLRM 240 (261)
Q Consensus 172 ~~--~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~-t~~FLe~~FL~EQve~ik~l~~~l~~L~r 240 (261)
.. ..+.++.++++.|+..|+...+-|.++.+. ..|.. ...+++ .+.+|+-+|++.|.++++.++.
T Consensus 933 ~~~~~~~~~~~~al~lAm~~Ekdai~fY~~la~~---~~d~e~~k~l~~-~LA~EEk~Hl~~L~~~~d~~~~ 1000 (1006)
T PRK12775 933 AGVKGRPDDPGNLFRIAIEFERRAVKFFKERVAE---TPDGSVERQLYK-ELAAEEREHVALLTTEFERWKQ 1000 (1006)
T ss_pred hhhccccCCHHHHHHHHHHHHHHHHHHHHHHHhh---CCChHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhc
Confidence 00 112468999999999999999998887664 56775 689999 9999999999999999999986
No 29
>PF13668 Ferritin_2: Ferritin-like domain
Probab=97.84 E-value=0.002 Score=52.57 Aligned_cols=131 Identities=18% Similarity=0.241 Sum_probs=104.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhhcccC---CccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCCCCC
Q 024844 96 EAAINEQINVEYNVSYVYHALYAYFDRD---NIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEFD 172 (261)
Q Consensus 96 e~aLNeQIn~El~ASy~YlsmAa~Fdrd---~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~P~~~f~ 172 (261)
.+.||-.++.|+...-.|..-..-+..+ ..-=+....+|+.....|+.|...|-+.+. |+++. +.|..+|.
T Consensus 3 ~~iL~~Al~lE~l~~~fY~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~E~~H~~~l~~~l~--g~~~~----~~~~~~~~ 76 (137)
T PF13668_consen 3 LDILNFALNLEYLEADFYQQAAEGFTLQDNKAALDPEVRDLFQEIADQEQGHVDFLQAALE--GGRPV----PPPAYDFP 76 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCChhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCCC----CCCccccc
Confidence 3679999999999999999988854211 123345778999999999999999998887 76663 45555553
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHH
Q 024844 173 HAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVS 236 (261)
Q Consensus 173 ~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~ 236 (261)
.+.+.+....+..|+..|......|..+... ..|+.+...+. .++..+.+|..+++.++.
T Consensus 77 ~~~~~~~~~~L~~A~~~E~~~~~~Y~g~~~~---~~~~~~~~~~~-~i~~~Ea~H~~~ir~ll~ 136 (137)
T PF13668_consen 77 FDPFTDDASFLRLAYTLEDVGVSAYKGAAPQ---IEDPELKALAA-SIAGVEARHAAWIRNLLG 136 (137)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH---cCCHHHHHHHH-HHHHHHHHHHHHHHHHhc
Confidence 3455789999999999999999999888775 46899999998 899999999999988764
No 30
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=97.73 E-value=0.0014 Score=56.49 Aligned_cols=125 Identities=14% Similarity=0.129 Sum_probs=104.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCCCCCcc
Q 024844 95 CEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEFDHA 174 (261)
Q Consensus 95 ~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~P~~~f~~~ 174 (261)
.++-|-+...-|-.+-..|+.||...++. |++.+|+.|+..|.+|..||..+.+-+.+.+ .+
T Consensus 5 t~~~L~~aF~GEs~a~~rY~~~A~~A~~e--G~~~va~lfr~iA~~E~~HA~~~~~~l~~~~---------~~------- 66 (166)
T COG1592 5 TEENLRKAFAGESMAVMRYLIFAKVAEEE--GYPEIARLFRAIAEAEAVHAKNHLKLLGKLL---------LV------- 66 (166)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHHHHHHHhcccc---------cc-------
Confidence 45566667777889999999999999965 9999999999999999999999998887765 01
Q ss_pred ccCCHHHHHHHHHHHHHHHHHH-HHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHH
Q 024844 175 EKGDALYAMELALSLEKLTNEK-LLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLR 239 (261)
Q Consensus 175 e~~d~lea~e~AL~lEk~vt~~-l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~ 239 (261)
++|..+-++.++.-|..-... +......|...++-....++. +.....-.|.+.+...++.++
T Consensus 67 -~~~~~eNl~~aieGE~~e~~emyp~~ae~A~~~g~~~~a~~f~-~~~~~Ek~H~~~~~~~Le~~~ 130 (166)
T COG1592 67 -LGDTRENLEEAIEGETYEITEMYPVFAEVAEEEGFKEAARSFR-AAAKAEKRHAEMFRGLLERLE 130 (166)
T ss_pred -cccHHHHHHHHHccchHHHHHhChHHHHHHHHcCcHHHHHHHH-HHHHHHHHHHHHHHHHHHhhh
Confidence 256788888888888765555 448888999999888898999 888888899999999888884
No 31
>cd01042 DMQH Demethoxyubiquinone hydroxylase, ferritin-like diiron-binding domain. Demethoxyubiquinone hydroxylases (DMQH) are members of the ferritin-like, diiron-carboxylate family which are present in eukaryotes (the CLK-1/CAT5 family) and prokaryotes (the Coq7 family). DMQH participates in one of the last steps of ubiquinone biosysnthesis and is responsible for DMQ hydroxylation, resulting in the formation of hydroxyubiquinone, a precursor of ubiquinone. CLK-1 is a mitochondrial inner membrane protein and Coq7 is a proposed interfacial integral membrane protein. Mutations in the Caenorhabditis elegans gene clk-1 affect biological timing and extend longevity. The conserved residues of a diiron center are present in this domain.
Probab=97.18 E-value=0.014 Score=50.33 Aligned_cols=122 Identities=17% Similarity=0.162 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCCCCCc---cccCCHHH
Q 024844 105 VEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEFDH---AEKGDALY 181 (261)
Q Consensus 105 ~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~P~~~f~~---~e~~d~le 181 (261)
-|+.|-.+|..-...+.. +.+..++.+.+.+|..|-..|-+.+..+|++|.+-.-.-....|-- .......-
T Consensus 11 GE~gA~~IY~gQ~~~~~~-----~~~~~~l~~~~~~E~~Hl~~f~~~i~~~~~rps~l~PlW~~~gf~lG~~tal~G~~~ 85 (165)
T cd01042 11 GEVGAVRIYRGQLAVARD-----PAVRPLIKEMLDEEKDHLAWFEELLPELGVRPSLLLPLWYVAGFALGALTALLGKKA 85 (165)
T ss_pred chHHHHHHHHHHHHHhCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHhhChHH
Confidence 489999999999998872 8999999999999999999999999999999975321100011100 00011245
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHH
Q 024844 182 AMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIA 232 (261)
Q Consensus 182 a~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~ 232 (261)
+|-..-+.|..|...|++-.+.=....|..+.+.|+ .|.+|+++|-+.-.
T Consensus 86 a~~~~~avE~~V~~Hy~~ql~~L~~~~d~~l~~~l~-~~r~DE~~H~d~A~ 135 (165)
T cd01042 86 AMACTAAVETVVEEHYNDQLRELPAQPDKELRAIIE-QFRDDELEHADIAE 135 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHH-HHHHHHHHHHHHHH
Confidence 677888999999999988777544445999999999 99999999887654
No 32
>TIGR02284 conserved hypothetical protein. Members of this protein family are found mostly in the Proteobacteria, although one member is found in the the marine planctomycete Pirellula sp. strain 1. The function is unknown.
Probab=96.53 E-value=0.064 Score=44.65 Aligned_cols=124 Identities=13% Similarity=0.094 Sum_probs=90.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCC---------
Q 024844 96 EAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQ--------- 166 (261)
Q Consensus 96 e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~--------- 166 (261)
+..||+.|...+.+-.-|-..+...+ -|.+..+|...+.+-..|+..|-.++...||.|.-..-.+
T Consensus 2 i~~Ln~Lie~~~D~~~gY~~aae~v~-----~~~lk~~f~~~~~~~~~~~~eL~~~v~~lGg~p~~~gs~~g~lhr~w~~ 76 (139)
T TIGR02284 2 IHSLNDLIEISIDGKDGFEESAEEVK-----DPELATLFRRIAGEKSAIVSELQQVVASLGGKPEDHGSMVGSLHQFWGK 76 (139)
T ss_pred hHHHHHHHHHcccHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 57899999999999999999998665 4689999999999999999999999999999886321111
Q ss_pred CCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHH
Q 024844 167 PPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKY 234 (261)
Q Consensus 167 P~~~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~ 234 (261)
...-|.. ++-..+++.+..-|..+.+.|.+..+-. .-++.+...|+ .|...++.--+.
T Consensus 77 lks~~~~---~~d~aiL~~~e~gEd~~~~~y~~aL~~~--~l~~~~r~~l~-----~q~~~i~~~~d~ 134 (139)
T TIGR02284 77 IRATLTP---NDDYVVLEEAERGEDRAKKAYDETLADQ--DTPAAARDVAL-----RQYPGVRACHDV 134 (139)
T ss_pred HHHHHcC---CChHHHHHHHHHhHHHHHHHHHHHHhcC--CCChHHHHHHH-----HHHHHHHHHHHH
Confidence 0011111 2345678888888988888888776531 35777776666 455444443333
No 33
>cd01050 Acyl_ACP_Desat Acyl ACP desaturase, ferritin-like diiron-binding domain. Acyl-Acyl Carrier Protein Desaturase (Acyl_ACP_Desat) is a mu-oxo-bridged diiron-carboxylate enzyme, which belongs to a broad superfamily of ferritin-like proteins and catalyzes the NADPH and O2-dependent formation of a cis-double bond in acyl-ACPs. Acyl-ACP desaturases are found in higher plants and a few bacterial species (Mycobacterium tuberculosis, M. leprae, M. avium and Streptomyces avermitilis, S. coelicolor). In plants, Acyl-ACP desaturase is a plastid-localized, covalently ACP linked, soluble desaturase that introduces the first double bound into saturated fatty acids, resulting in the corresponding monounsaturated fatty acid. Members of this class of soluble desaturases are specific for a particular substrate chain length and introduce the double bond between specific carbon atoms. For example, delta 9 stearoyl-ACP is specific for stearic acid and introduces a double bond between carbon 9 and 1
Probab=96.46 E-value=0.3 Score=45.83 Aligned_cols=149 Identities=17% Similarity=0.247 Sum_probs=109.5
Q ss_pred cCcHHHHHHHHHHhHHHHHHHHHHHHH-HhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCC-
Q 024844 90 KYEDECEAAINEQINVEYNVSYVYHAL-YAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQP- 167 (261)
Q Consensus 90 ~~s~~~e~aLNeQIn~El~ASy~Ylsm-Aa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~P- 167 (261)
.+++....+|---.-.| ...=.|+.+ ..+|..++..-+++++|......||-.|+.-|-+|+..- |++....+..-
T Consensus 55 ~L~~~~~~~l~~~~itE-d~LP~Y~~~L~~~f~~~~~~~~~w~~w~~~WtaEE~rHg~aL~~YL~~s-g~vdp~~le~~~ 132 (297)
T cd01050 55 ELPDDARVALVGNLLTE-EALPTYHSMLNRLFGLDDESPTAWARWVRRWTAEENRHGDLLNKYLYLT-GRVDPRALERTR 132 (297)
T ss_pred cCCHHHHHHHHHHHHHh-hccHHHHHHHHHHcCcccccccHHHHHHHHHhHHHHHHHHHHHHHHHHh-CCCCHHHHHHHH
Confidence 47777776666555556 333444443 444543322447899999999999999999999999885 55554443311
Q ss_pred ----CCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHHhcc
Q 024844 168 ----PSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVG 242 (261)
Q Consensus 168 ----~~~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~r~g 242 (261)
...|+.....++...|-...-.|+.....++++.+.|. .+||.+...+. ..-.++..|.+-..+++..+-...
T Consensus 133 ~~~~~~G~~~~~~~~~~~~~~y~~fqE~aT~v~y~nl~~~a~-~gdPvL~~i~~-~IA~DE~rH~~fy~~~v~~~le~d 209 (297)
T cd01050 133 QYLIGSGFDPGTDNSPYRGFVYTSFQELATRISHRNTARLAG-AGDPVLAKLLG-RIAADEARHEAFYRDIVEALFELD 209 (297)
T ss_pred HHHHhCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhC
Confidence 12233222235668888888899999999999999988 89999999999 999999999999999999876553
No 34
>cd01048 Ferritin_like_AB2 Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria, subgroup 2 (Ferritin_like_AB2). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. The conserved residues of a diiron center are present within the putative active site.
Probab=96.05 E-value=0.48 Score=39.07 Aligned_cols=121 Identities=19% Similarity=0.188 Sum_probs=87.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCCCCC----
Q 024844 97 AAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEFD---- 172 (261)
Q Consensus 97 ~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~P~~~f~---- 172 (261)
+.|.-.+..|..+--+|..++.-|. .-.-|...+..|.+|...+...+.+.|..... .+.+...|.
T Consensus 3 ~~L~~Ale~Ek~a~~~Y~~~~~k~~--------~~~~F~~la~~E~~H~~~l~~L~~~~~~~~p~--~~~~~~~f~~~~~ 72 (135)
T cd01048 3 AALLYALEEEKLARDVYLALYEKFG--------GLRPFSNIAESEQRHMDALKTLLERYGLPDPV--DPFSGGVFTNPQY 72 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc--------CcchHHHHHHHHHHHHHHHHHHHHHcCCCCCC--CccccccccchhH
Confidence 5677788999999999999998773 45678888999999999998888877744211 111111111
Q ss_pred ----ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHH
Q 024844 173 ----HAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKI 231 (261)
Q Consensus 173 ----~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l 231 (261)
.....+..++++.+...|+....-|.++.+ ...|+.+...++ ....+.-+|..-+
T Consensus 73 ~~l~~~~~~s~~~al~~g~~~E~~~i~~ye~~~~---~~~d~d~k~v~~-~L~~~e~~H~~~f 131 (135)
T cd01048 73 NQLVEQGPKSLQDALEVGVLIEELDIADYDRLLE---RTQNPDIRDVFE-NLQAASRNHHLPF 131 (135)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHH---hcccHHHHHHHH-HHHHHHHHHHHHH
Confidence 011246789999999999888777777665 456788888888 7777766665543
No 35
>PF03232 COQ7: Ubiquinone biosynthesis protein COQ7; InterPro: IPR011566 Coq7 (also known as Clk-1) is a di-iron carboxylate protein occuring in both prokaryotes and eukaryotes that is essential for ubiquinone biosynthesis [, ]. It has been implicated in the aging process as mutations in the Caenorhabditis elegans gene lead to increased lifespan []. Coq7 is a membrane-bound protein that functions as a monooxygenase to hydroxylate demethoxyubiquinone (2-methoxy-5-methyl-6-polyprenyl-1,4-benzoquinone) in the penultimate step of ubiquinone biosynthesis []. Biochemical studies indicate that NADH can serve directly as a reductant for catalytic activation of dioxygen and substrate oxidation by the enzyme, with no requirement for an additional reductase protein component []. This direct reaction with NADH is so far unique amongst members of the di-iron carboxylate protein family. This entry is specific for the bacterial Coq7 proteins.; GO: 0006744 ubiquinone biosynthetic process, 0055114 oxidation-reduction process
Probab=96.05 E-value=0.17 Score=43.87 Aligned_cols=123 Identities=20% Similarity=0.224 Sum_probs=94.1
Q ss_pred hHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCC---CCCc---ccc
Q 024844 103 INVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPS---EFDH---AEK 176 (261)
Q Consensus 103 In~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~P~~---~f~~---~e~ 176 (261)
-.-|+.|-.+|..-...+.. .|.+..++++..++|.+|-..|-+.+.++|.+|.+- .|.- .|-- .-.
T Consensus 11 HAGE~~A~~iY~gQ~~~~~~----~~~~~~~l~~~~~~E~~Hl~~f~~~l~~~~~RpS~l---~Plw~~~g~~LG~~tal 83 (172)
T PF03232_consen 11 HAGEVGAVRIYRGQLAVARR----DPELRPFLKEMAEEEKDHLAWFEQLLPELRVRPSLL---NPLWYVAGFALGALTAL 83 (172)
T ss_pred HHHHHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHHHHHHHHHHHHhHHcCCCCcHH---HHHHHHHHHHHHHHHHh
Confidence 35699999999999998873 688999999999999999999999999999998743 1210 0000 000
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHh---hCCChhHHHHhHHhhHHHHHHHHHHHHH
Q 024844 177 GDALYAMELALSLEKLTNEKLLSLHSVAD---RNNDPQMAEFVESEFLGEQVEAINKIAK 233 (261)
Q Consensus 177 ~d~lea~e~AL~lEk~vt~~l~~L~~lA~---~~~D~~t~~FLe~~FL~EQve~ik~l~~ 233 (261)
....-+|-..-+.|..+.+.|++-++.-. ...|..+.+.|+ .|-+|+.+|-+.-.+
T Consensus 84 ~G~~~~~a~t~avE~~V~~Hy~~Ql~~L~~~~~~~d~~l~~~i~-~~r~DE~~H~d~A~~ 142 (172)
T PF03232_consen 84 LGDKAAMACTAAVETVVEEHYNDQLRELPAMGEEEDPELRAIIE-QFRDDELEHRDTAIE 142 (172)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 11245666777889999999988777555 378999999999 999999999876543
No 36
>PF03405 FA_desaturase_2: Fatty acid desaturase; InterPro: IPR005067 Fatty acid desaturases are enzymes that catalyze the insertion of a double bond at the delta position of fatty acids. There seem to be two distinct families of fatty acid desaturases which do not seem to be evolutionary related. Family 1 is composed of: - Stearoyl-CoA desaturase (SCD) (1.14.19.1 from EC) []. Family 2 is composed of: - Bacterial fatty acid desaturases. - Plant stearoyl-acyl-carrier-protein desaturase (1.14.19.1 from EC) [], this enzyme catalyzes the introduction of a double bond at the delta(9) position of steraoyl-ACP to produce oleoyl-ACP. This enzyme is responsible for the conversion of saturated fatty acids to unsaturated fatty acids in the synthesis of vegetable oils. - Cyanobacterial DesA [], an enzyme that can introduce a second cis double bond at the delta(12) position of fatty acid bound to membranes glycerolipids. DesA is involved in chilling tolerance; the phase transition temperature of lipids of cellular membranes being dependent on the degree of unsaturation of fatty acids of the membrane lipids. This entry contains fatty acid desaturases belonging to Family 2. ; GO: 0045300 acyl-[acyl-carrier-protein] desaturase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 1OQ7_B 1AFR_A 2XZ0_B 1OQB_A 2J2F_E 1OQ4_B 1OQ9_A 2XZ1_A 1ZA0_A.
Probab=96.05 E-value=0.62 Score=44.42 Aligned_cols=149 Identities=17% Similarity=0.248 Sum_probs=101.6
Q ss_pred cCcHHHHHHHHHHhHHHHHHHHHHHH-HHhhccc---CCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccC
Q 024844 90 KYEDECEAAINEQINVEYNVSYVYHA-LYAYFDR---DNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIM 165 (261)
Q Consensus 90 ~~s~~~e~aLNeQIn~El~ASy~Yls-mAa~Fdr---d~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~ 165 (261)
.+++....+|---+-.|=+.-- |+. ++.+|.. ++....+.++|.....-||-.|+.-|-+|+.-.| .|....+.
T Consensus 57 ~Lpd~~~~alv~~llTEd~LPs-Y~~~l~~~~~~~~~~ga~~~~W~~wv~~WTAEEnRHg~~L~~YL~vsg-~vDp~~lE 134 (330)
T PF03405_consen 57 TLPDDARVALVGNLLTEDNLPS-YHRELATLFGVRDEDGASDSPWGRWVGRWTAEENRHGDALRDYLYVSG-RVDPVALE 134 (330)
T ss_dssp TS-HHHHHHHHHHHHHHHTHHH-HHHHHTTSTTT--SSSS--SHHHHHHHHHHHHHHHHHHHHHHHHHHCT-SS-CCCCC
T ss_pred cCCHHHHHHHHHHHHhhhhhhH-HHHHHHhhcCccccCCCCCCcHHHHcccccccccccHHHHHHHHHHhC-CCCHHHHH
Confidence 4777776655444444444332 333 3444442 2112456899999999999999999999997755 55544444
Q ss_pred CCC-----CCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHHh
Q 024844 166 QPP-----SEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRM 240 (261)
Q Consensus 166 ~P~-----~~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~r 240 (261)
.-. ..|+.....++...|-...-.|+.+.-+..++.++|.+.+|+.+...+. ..-.++..|..-..+++..+=.
T Consensus 135 ~~r~~~i~~G~~~~~~~~p~~~~vYtsfQE~AT~vsh~n~~~~a~~~~DpvL~~il~-~IA~DE~rH~~fy~~iv~~~l~ 213 (330)
T PF03405_consen 135 RTRMYLITAGFDPGFESDPYLGFVYTSFQERATQVSHRNTGRLAKQAGDPVLAQILG-RIAADEARHEAFYRNIVEAYLE 213 (330)
T ss_dssp HCCHHHHHH----S-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHH-HHHhhHHHHHHHHHHHHHHHHh
Confidence 321 1243222246788999999999999999999999999999999998888 8888888888888877776544
Q ss_pred c
Q 024844 241 V 241 (261)
Q Consensus 241 ~ 241 (261)
+
T Consensus 214 ~ 214 (330)
T PF03405_consen 214 L 214 (330)
T ss_dssp H
T ss_pred h
Confidence 3
No 37
>PF09537 DUF2383: Domain of unknown function (DUF2383); InterPro: IPR019052 This entry represents a functionally uncharacterised ferritin like domain.; PDB: 3FSE_B.
Probab=95.25 E-value=0.17 Score=39.81 Aligned_cols=63 Identities=21% Similarity=0.208 Sum_probs=53.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeee
Q 024844 94 ECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKL 161 (261)
Q Consensus 94 ~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l 161 (261)
+.+..||+.|.....+...|-..+.-++. +.+..+|.+.+.+...|+..|-.++...||.|.-
T Consensus 1 ~~i~~Ln~Ll~~~~d~~~~Y~~a~~~~~~-----~~lk~~f~~~~~~~~~~~~~L~~~i~~~Gg~p~~ 63 (111)
T PF09537_consen 1 ETIEALNDLLKGLHDGIEGYEKAAEKAED-----PELKSLFQEFAQERQQHAEELQAEIQELGGEPEE 63 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--S-----HHHHHHHHHHHHHHHHHHHHHHHHHHHTT--H--
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCc
Confidence 46789999999999999999999998882 6899999999999999999999999999999864
No 38
>PF05974 DUF892: Domain of unknown function (DUF892); InterPro: IPR010287 This domain is found in several hypothetical bacterial proteins of unknown function.; PDB: 4ERU_B 3OGH_A 2GS4_B 2GYQ_B 3HIU_A.
Probab=93.15 E-value=4.7 Score=34.09 Aligned_cols=138 Identities=17% Similarity=0.139 Sum_probs=103.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCC------
Q 024844 93 DECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQ------ 166 (261)
Q Consensus 93 ~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~------ 166 (261)
+-....|.+....|-.+.-.+-.|+.-.. -|.+..-|..+..+-+.|..+|-+-+...|+.|.-...+.
T Consensus 4 ~~~~~~L~d~y~aE~q~~~~l~~~~~~a~-----~~~L~~~l~~h~~eT~~q~~rLe~~~~~lg~~p~~~~c~~~~gl~~ 78 (159)
T PF05974_consen 4 DLFIDELRDLYSAEKQLLKALPKLAEAAS-----SPELKAALEEHLEETEQQIERLEQIFEALGADPSAEKCDAMEGLVA 78 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-S-----SHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-CHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCccCcchHHHHHHH
Confidence 44577888999999999999999998666 2889999999999999999999999999999886322110
Q ss_pred ----CCCCCCccccCCHHHH--HHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHH
Q 024844 167 ----PPSEFDHAEKGDALYA--MELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQL 238 (261)
Q Consensus 167 ----P~~~f~~~e~~d~lea--~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L 238 (261)
-...+..+ +.+.++ +-.+...|..=+..|..|..+|..-++....+.|+ .-|+|..+.-.+|..+...+
T Consensus 79 e~~~~~~~~~~d--~~~~D~~li~a~q~~ehyeIA~Y~tL~~~A~~lG~~e~a~lL~-~~L~EE~~~~~~L~~~a~~~ 153 (159)
T PF05974_consen 79 EAQELIEEFAED--PAVKDAALIAAAQKVEHYEIAAYGTLIALAKQLGDEEAAQLLE-QNLDEEEAADEKLTQLAESI 153 (159)
T ss_dssp HHHHHHHT-S-S--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-HHHHHHHH-HHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHhcccCC--chHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 00000000 123333 35678889999999999999999999999999999 88888888888887776543
No 39
>cd07910 MiaE MiaE tRNA-modifying nonheme diiron monooxygenase, ferritin-like diiron-binding domain. MiaE is a nonheme diiron monooxygenase that catalyzes the posttranscriptional allylic hydroxylation of a modified nucleoside in tRNA called 2-methylthio-N-6-isopentenyl adenosine (ms2i6A). ms2i6A is found at position 37, next to the anticodon at the 3' position in almost all eukaryotic and bacterial tRNA's that read codons beginning with uridine. The miaE gene is absent in Escherichia coli, a finding consistent with the absence of the hydroxylated derivative of ms2i6A in this species.
Probab=92.75 E-value=6.4 Score=34.54 Aligned_cols=139 Identities=14% Similarity=0.182 Sum_probs=87.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCCC---
Q 024844 94 ECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSE--- 170 (261)
Q Consensus 94 ~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~P~~~--- 170 (261)
+....|-++.+.|..|+.+=++|=..|- ..+++..-+-..+.||+.|=+++++-+.+|| +.+.++.+++-.
T Consensus 18 nl~~iL~DHA~CE~KAA~~A~~L~~rY~----~~~~Lv~~m~~LarEEL~HFeqV~~im~~Rg--i~l~~~~~~~Ya~~L 91 (180)
T cd07910 18 NLDEILIDHAHCEKKAASSAMSLIFRYP----EKPELVEAMSDLAREELQHFEQVLKIMKKRG--IPLGPDSKDPYASGL 91 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC----CcHhHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCCCCCCCCHHHHHH
Confidence 5667888999999999998888755554 3578999999999999999999999999999 455555555310
Q ss_pred CCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHHhcc
Q 024844 171 FDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVG 242 (261)
Q Consensus 171 f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~r~g 242 (261)
....-++.+...+..-|--=--=..+-.....+|....|..+..|-. .++..+..|- .+++.--+..+
T Consensus 92 ~k~vR~~~p~~llD~Llv~alIEARScERF~lLa~~l~D~eL~~FY~-~Ll~SEarHy---~~yl~LA~~y~ 159 (180)
T cd07910 92 RKLVRKGEPERLLDRLLVAALIEARSCERFALLAPALPDPELKKFYR-GLLESEARHY---ELFLDLARKYF 159 (180)
T ss_pred HHHcccCChHHHHHHHHHHHHHHHHhHHHHHHHhccCCCHHHHHHHH-HHHHHHhhHH---HHHHHHHHHHc
Confidence 00001112222221111100000111123444555568999999988 6776655554 45555555544
No 40
>COG2941 CAT5 Ubiquinone biosynthesis protein COQ7 [Coenzyme metabolism]
Probab=92.67 E-value=5.8 Score=35.18 Aligned_cols=145 Identities=17% Similarity=0.190 Sum_probs=91.2
Q ss_pred CCCCccchhcccCcHHHHHHHHHHh----HHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024844 79 PVSPLLSLARQKYEDECEAAINEQI----NVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNL 154 (261)
Q Consensus 79 ~~~~~~s~aRq~~s~~~e~aLNeQI----n~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~ 154 (261)
|+.|..+..|..+|+.--.-+-.-| .-|+.|-++|.--+++.... -+.. -.++.+++|-.|--.+-+++.+
T Consensus 22 ~~~~~~a~~rpdlS~~d~~~~~~iiRVnhaGE~~A~~iY~GQ~~~~r~~---~~R~--~l~em~d~E~~HL~~f~~~l~e 96 (204)
T COG2941 22 PTRPRPAMPRPDLSDADKRILAGIIRVNHAGELGAQAIYQGQAAVARSP---EPRI--QLKEMADEEIDHLAWFEQRLLE 96 (204)
T ss_pred CCCCCCCCCCCCcCcHHHHHHHHhhhccchhHHHHHHHHhhHHHHHcCc---chHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555556656655443333332 35999999999999888854 2223 8899999999999999999999
Q ss_pred cCCeeeecccCCCCCCCCc----cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHH
Q 024844 155 RGGKVKLHSIMQPPSEFDH----AEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINK 230 (261)
Q Consensus 155 RGG~v~l~~I~~P~~~f~~----~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~ 230 (261)
||-+|.+-.----...|-- .--| ..-+|-..-+.|..+-..|..=... ..+.|..+...|. .|=+++++|.+.
T Consensus 97 ~~vRPsll~P~W~~~~FalGA~a~Llg-dk~am~~teavE~vIe~Hy~~ql~~-L~~~d~~lr~~l~-qfR~DE~eH~d~ 173 (204)
T COG2941 97 LGVRPSLLNPLWYAAAFALGAGAGLLG-DKAAMGFTEAVETVIEKHYDGQLRE-LPNLDAELRAILA-QFRDDELEHLDN 173 (204)
T ss_pred ccCCccHHHHHHHHHHHHHHHHHhhcc-cHHHHHHHHHHHHHHHHHHHHHHHH-HhhccHHHHHHHH-HHhhHHHHHHHH
Confidence 9999875321100000000 0001 1233444445555555555443332 2348889999999 999999988776
Q ss_pred H
Q 024844 231 I 231 (261)
Q Consensus 231 l 231 (261)
.
T Consensus 174 A 174 (204)
T COG2941 174 A 174 (204)
T ss_pred H
Confidence 4
No 41
>PF04305 DUF455: Protein of unknown function (DUF455); InterPro: IPR007402 This is a family of uncharacterised proteins.
Probab=91.58 E-value=5.7 Score=36.50 Aligned_cols=143 Identities=15% Similarity=0.128 Sum_probs=93.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCCCCC
Q 024844 93 DECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEFD 172 (261)
Q Consensus 93 ~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~P~~~f~ 172 (261)
+.-...|..-.+.|++|...++-...-|.+ +.-. .|-.=|.+.+.||-.|-..+.+++...|. .+.+++...-=|+
T Consensus 65 ~~r~~llHaiAhIE~~AIdLa~Da~~RF~~-~lP~-~f~~D~~~va~dEarHf~ll~~rL~~lG~--~yGd~P~h~gLw~ 140 (253)
T PF04305_consen 65 EGRAALLHAIAHIELNAIDLALDAIYRFHP-NLPR-EFYDDWLRVADDEARHFRLLRERLEELGS--DYGDLPAHDGLWE 140 (253)
T ss_pred hhHHHHHHHhcchHHHHHHHHHHHHHHHhc-cCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CCCCcchhhHHHH
Confidence 344678888889999999999999999922 3333 34444556799999999999999999994 4555554432222
Q ss_pred ccccC--CHHHHHHH-HHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHHh
Q 024844 173 HAEKG--DALYAMEL-ALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRM 240 (261)
Q Consensus 173 ~~e~~--d~lea~e~-AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~r 240 (261)
..... |++.=|-. -+.+|-.--+.--.+.+.-...+|..+...|+ -.+.|+|.|++.=...+..+..
T Consensus 141 ~~~~t~~dl~~R~A~vp~~~EArGLD~~p~~~~k~~~~gD~~sa~iL~-~I~~DEi~HV~~G~rWf~~~c~ 210 (253)
T PF04305_consen 141 AAEQTAHDLLARMALVPRVLEARGLDVTPFIIEKFRSAGDEESAAILE-IILRDEIGHVAIGNRWFRYLCE 210 (253)
T ss_pred HHHHhccCHHHHHHHHHHHHHhhCCCCCHHHHHHHHHCCCHHHHHHHH-HHHHHHHHHHHhhHHHHHHHHH
Confidence 11110 12211111 12334333333334444456789999999999 9999999999766666666554
No 42
>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin []. The physiological role of Rr has not been identified. The 3-D structure of Desulphovibrio vulgaris rubrerythrin has been solved []. The structure reveals a tetramer of two-domain subunits. In each monomer, the N-terminal 146 residues form a four-alpha-helix bundle containing the diiron-oxo site (centre I), and the C-terminal 45 residues form a rubredoxin-like FeS4 domain.; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1VJX_A 2FZF_A 3SID_B 3QHC_B 3QHB_B 4DI0_A 1J30_B 1YV1_A 1YUZ_B 1YUX_B ....
Probab=89.76 E-value=1.9 Score=33.79 Aligned_cols=56 Identities=20% Similarity=0.293 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHH
Q 024844 181 YAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQL 238 (261)
Q Consensus 181 ea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L 238 (261)
++++.|+..|......|..+...+...+ |.+..++. .+-.+..+|.+.+..++..+
T Consensus 1 e~L~~A~~~E~~~~~~Y~~~a~~~~~~~-p~~~~~f~-~lA~~E~~H~~~~~~l~~~~ 56 (137)
T PF02915_consen 1 EILEMAIKMELEAAKFYRELAEKAKDEG-PELKELFR-RLAEEEQEHAKFLEKLLRKL 56 (137)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHH-HHHHHHHHHHHHHHHHHCHC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhhcc-cHHHHHHH-HHHHHHHHHHHHHHHHHHhh
Confidence 4788999999999999999999999888 99999999 99999999999999888776
No 43
>COG1633 Uncharacterized conserved protein [Function unknown]
Probab=88.97 E-value=2.8 Score=36.41 Aligned_cols=60 Identities=15% Similarity=0.159 Sum_probs=54.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHHh
Q 024844 177 GDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRM 240 (261)
Q Consensus 177 ~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~r 240 (261)
..+.+++..|+..|+....-|.++++.+ .|..+...++ ++..+..+|.+++..++.++..
T Consensus 23 ~~~~e~L~~Ai~~E~eA~~fY~~lae~~---~~~~~rk~~~-~la~eE~~H~~~f~~l~~~~~~ 82 (176)
T COG1633 23 LSIEELLAIAIRGELEAIKFYEELAERI---EDEEIRKLFE-DLADEEMRHLRKFEKLLEKLTP 82 (176)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhc---CCHhHHHHHH-HHHHHHHHHHHHHHHHHHHhcC
Confidence 3678999999999999999999998865 6778999999 9999999999999999998854
No 44
>PF05067 Mn_catalase: Manganese containing catalase; InterPro: IPR007760 Catalases (1.11.1.6 from EC) are antioxidant enzymes that catalyse the conversion of hydrogen peroxide to water and molecular oxygen. Hydrogen peroxide is produced as a consequence of oxidative cellular metabolism and can be converted to the highly reactive hydroxyl radical via transition metals, this radical being able to damage a wide variety of molecules within a cell, leading to oxidative stress and cell death. Catalases act to neutralise hydrogen peroxide toxicity, and are produced by all aerobic organisms ranging from bacteria to man. There are three structurally independent classes of catalases: ubiquitous mono-functional haem-containing catalases (IPR002226 from INTERPRO), bifunctional haem-containing catalase-peroxidases that are closely related to plant peroxidases (IPR000763 from INTERPRO), and non-haem manganese-containing catalases []. This entry represents the non-haem Mn-catalases, which are found in several bacterial species []. The structure of the Mn catalase from Lactobacillus plantarum reveals a homo-hexamer, where each subunit contains a dimanganese active site that is accessed by a single substrate channel []. The dimanganese active site performs a two-electron catalytic cycle that alternately oxidises and reduces the dimanganese atoms in a manner that is similar to its haem-counterpart found in other catalases.; PDB: 1JKV_D 1JKU_D 1O9I_E 2CWL_A 2V8T_B 2V8U_A.
Probab=88.12 E-value=7 Score=36.61 Aligned_cols=144 Identities=13% Similarity=0.144 Sum_probs=98.6
Q ss_pred CcHHHHHHHHHHh---HHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeec-----
Q 024844 91 YEDECEAAINEQI---NVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLH----- 162 (261)
Q Consensus 91 ~s~~~e~aLNeQI---n~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~----- 162 (261)
-++....+|-+|+ .-|+.++.+|+.-+.-|... . .+...+..-+-||..|.|.+-.-|++.-......
T Consensus 17 PDP~~A~~LqeqlGG~~GElsaamqYl~Q~~~~~~~--~--~~kdlL~dIatEEl~H~Emvat~I~~Ll~g~~~~~~~~~ 92 (283)
T PF05067_consen 17 PDPRFAKLLQEQLGGPFGELSAAMQYLFQSFNMRGP--E--KYKDLLMDIATEELGHVEMVATMIAQLLKGAPPEEQEEA 92 (283)
T ss_dssp --HHHHHHHCHHHHSTTSHHHHHHHHHHHHHH-SST--T--TTHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTSSHHHH
T ss_pred CCHHHHHHHHHHhcCCcchHHHHHHHHHHhhcCCCc--h--HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcchhhhh
Confidence 3455666777777 46999999999999999843 2 2358899999999999999877766654322111
Q ss_pred --------c----------cC-----CCC----CCCCc---cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhH
Q 024844 163 --------S----------IM-----QPP----SEFDH---AEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQM 212 (261)
Q Consensus 163 --------~----------I~-----~P~----~~f~~---~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t 212 (261)
. |. .|. .-|.. ...||+.--|...+..|......+..|++.. .|+..
T Consensus 93 ~~~~p~~~~~~~~~n~~h~i~~g~g~~p~ds~G~PWt~~yv~~sGdl~aDL~~NiaAE~~AR~~yerL~~mT---dDpgv 169 (283)
T PF05067_consen 93 APGDPLLAAIMGGGNPQHYIVHGGGAYPVDSNGVPWTAAYVQASGDLIADLRSNIAAEQRARLQYERLYEMT---DDPGV 169 (283)
T ss_dssp HGGGTTTGGGGCSS-SHHHHTSSSS--SB-TTS-B-BGGG----S-HHHHHHHHHHHHHHHHHHHHHHHTT------HHH
T ss_pred cccchHHHHhhcCCCchhhhcCCCCCCccCCCCCcccchhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhc---CCccH
Confidence 0 11 010 01221 1347899999999999999999999888764 89999
Q ss_pred HHHhHHhhHHHHHHHHHHHHHHHHHHHhcc
Q 024844 213 AEFVESEFLGEQVEAINKIAKYVSQLRMVG 242 (261)
Q Consensus 213 ~~FLe~~FL~EQve~ik~l~~~l~~L~r~g 242 (261)
.+.|. ..+.-.+-|...+..-|..|....
T Consensus 170 kd~L~-FLl~Re~vH~~~f~~ALe~l~~~~ 198 (283)
T PF05067_consen 170 KDMLS-FLLAREIVHQQQFGKALEELQENF 198 (283)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHhhC
Confidence 99999 777778888888888887776543
No 45
>cd01052 DPSL DPS-like protein, ferritin-like diiron-binding domain. DPSL (DPS-like). DPSL is a phylogenetically distinct class within the ferritin-like superfamily, and similar in many ways to the DPS (DNA Protecting protein under Starved conditions) proteins. Like DPS, these proteins are expressed in response to oxidative stress, form dodecameric cage-like particles, preferentially utilize hydrogen peroxide in the controlled oxidation of iron, and possess a short N-terminal extension implicated in stabilizing cellular DNA. This domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. These proteins are distantly related to bacterial ferritins which assemble 24 monomers, each of which have a four-helix bundle with a fifth shorter helix at the C terminus and a diiron (ferroxidase) center. Ferritins contain a center where oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical
Probab=87.39 E-value=5.1 Score=32.49 Aligned_cols=61 Identities=16% Similarity=0.115 Sum_probs=55.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHH
Q 024844 178 DALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLR 239 (261)
Q Consensus 178 d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~ 239 (261)
...+.+...+..|......+...|..+...+.+.+..+++ ..-.+..++++.+.+.+..|.
T Consensus 6 ~~~~~Ln~~la~e~~~~~~y~~~~~~~~g~~f~~l~~~~~-~~~~ee~~Had~laEri~~lG 66 (148)
T cd01052 6 ELIELLNKAFADEWLAYYYYTILAKHVKGPEGEGIKEELE-EAAEEELNHAELLAERIYELG 66 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHH-HHHHHHHHHHHHHHHHHHHhC
Confidence 4678899999999999999999999999999999999999 888899999999999888874
No 46
>COG3546 Mn-containing catalase [Inorganic ion transport and metabolism]
Probab=87.18 E-value=15 Score=34.25 Aligned_cols=143 Identities=14% Similarity=0.155 Sum_probs=104.9
Q ss_pred CcHHHHHHHHHHh---HHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeee-----c
Q 024844 91 YEDECEAAINEQI---NVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKL-----H 162 (261)
Q Consensus 91 ~s~~~e~aLNeQI---n~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l-----~ 162 (261)
-++...++|.+|+ .-|+.++.+|+.-+.-|. + +++-..+..-+.||..|-+.+-.-++..-..... .
T Consensus 17 pdp~~A~~lqEqlGG~~GElsaamqYl~Q~fn~r----~-~~~~dll~DI~TEEl~HlEmvat~I~~L~~ga~~e~~~~~ 91 (277)
T COG3546 17 PNPQLAKLLQEQLGGAFGELSAAMQYLFQGFNVR----D-AKYKDLLMDIGTEELSHLEMVATMINLLNKGATGEGAEEA 91 (277)
T ss_pred CChHHHHHHHHHhCCcchHHHHHHHHHHhhcccC----c-hHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCCCCCCcch
Confidence 3556677888887 479999999999888777 2 6788899999999999999998887776544433 1
Q ss_pred ccC------------------CCCCC-----CCc---cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHh
Q 024844 163 SIM------------------QPPSE-----FDH---AEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFV 216 (261)
Q Consensus 163 ~I~------------------~P~~~-----f~~---~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FL 216 (261)
++. .|+.+ |.- ...|+++-=|...+..|......+..|+++ ..|+...+.|
T Consensus 92 ~l~~s~~~~~n~~h~~~~~~g~~p~dS~G~pWta~YI~~sGnliaDlr~NiaaE~~aR~~y~rLy~m---tdDpgvrd~L 168 (277)
T COG3546 92 ELYGSGLGGMNPHHISVLLYGAGPADSAGVPWTAAYIVASGNLIADLRSNIAAEARARLQYERLYEM---TDDPGVRDTL 168 (277)
T ss_pred hhHHhhccCCCchhhhhhccCCCCcccCCCccchhhhhccCccHHHHHHHHHHHhccceeeeeeeec---CCCccHHHHH
Confidence 000 01110 110 134677777788888888777777777776 4899999999
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHhcc
Q 024844 217 ESEFLGEQVEAINKIAKYVSQLRMVG 242 (261)
Q Consensus 217 e~~FL~EQve~ik~l~~~l~~L~r~g 242 (261)
. ..|.-.+-|...+..-|..|+..+
T Consensus 169 ~-fLl~Re~~H~~~f~kAL~~l~~~~ 193 (277)
T COG3546 169 S-FLLTREIAHQNAFRKALESLENEE 193 (277)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9 777778888888888888887766
No 47
>PF12902 Ferritin-like: Ferritin-like; PDB: 3HL1_A.
Probab=86.70 E-value=3.7 Score=37.06 Aligned_cols=62 Identities=16% Similarity=0.138 Sum_probs=45.5
Q ss_pred HHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeec
Q 024844 99 INEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLH 162 (261)
Q Consensus 99 LNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~ 162 (261)
|...|.+|+...-.||..++--+. -.-.....-.+.-+.|||-|.....+-+|-.||.|.+.
T Consensus 1 Lq~Ai~lE~atip~YL~a~ySi~~--~~~~~~~~~i~~V~~eEMlHl~l~~Nll~alGg~P~l~ 62 (227)
T PF12902_consen 1 LQQAIELELATIPPYLTALYSIKP--GTNEEARNLIRSVAIEEMLHLSLAANLLNALGGSPRLT 62 (227)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHBS---TTSH-HHHHHHHHHHHHHHHHHHHHHHHHHTT------
T ss_pred CcHHHHHHHHHHHHHHHHHcccCC--CcchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccc
Confidence 567889999999999977666642 22333888999999999999999999999999999886
No 48
>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria (Ferritin_like_AB). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. This family includes unknown or hypothetical proteins which were sequenced from mostly anaerobic or microaerophilic metal-metabolizing and/or nitrogen-fixing microbes. The family includes sequences from ferric-, sulfate-, and arsenic-reducing bacteria, Geobacter, Magnetospirillum, Desulfovibrio, and Desulfitobacterium. Also included are several nitrogen-fixing endosymbiotic bacteria, Rhizobium, Mesorhizobium, and Bradyrhizobium; also phototrophic purple nonsulfur bacteria, Rhodobacter and Rhodopseudomonas, as well as, obligate thermophiles, Thermotoga, Thermoanaerobacter, and Pyrococcus. The conserved residues of a diiron center are present in this uncharacterized domain.
Probab=86.68 E-value=3.8 Score=31.93 Aligned_cols=55 Identities=24% Similarity=0.376 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHH
Q 024844 181 YAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLR 239 (261)
Q Consensus 181 ea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~ 239 (261)
+++..|+.+|+.....|..+... .+|+....+++ .+-.++.+|.+.+...+..+.
T Consensus 1 ~~l~~a~~~E~~~~~~Y~~~a~~---~~~~~~~~~~~-~la~eE~~H~~~l~~~~~~~~ 55 (139)
T cd01045 1 EILALAIKMEEEAAEFYLELAEK---AKDPELKKLFE-ELAEEEKEHAERLEELYEKLF 55 (139)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhH---CCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence 36788999999999999988665 47779999999 999999999999999999885
No 49
>cd00907 Bacterioferritin Bacterioferritin, ferritin-like diiron-binding domain. Bacterioferritins, also known as cytochrome b1, are members of a broad superfamily of ferritin-like diiron-carboxylate proteins. Similar to ferritin in architecture, Bfr forms an oligomer of 24 subunits that assembles to form a hollow sphere with 432 symmetry. Up to 12 heme cofactor groups (iron protoporphyrin IX or coproporphyrin III) are bound between dimer pairs. The role of the heme is unknown, although it may be involved in mediating iron-core reduction and iron release. Each subunit is composed of a four-helix bundle which carries a diiron ferroxidase center; it is here that initial oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical products, and storage of ferric-hydroxyphosphate at the core. Some bacterioferritins are composed of two subunit types, one conferring heme-binding ability (alpha) and the other (beta) best
Probab=86.33 E-value=5.8 Score=32.33 Aligned_cols=61 Identities=15% Similarity=0.085 Sum_probs=54.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHH
Q 024844 178 DALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLR 239 (261)
Q Consensus 178 d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~ 239 (261)
...+.+..++.+|-.....|...+..+...+-+.+.++++ ..-.|..+|.+.+.+.+..+-
T Consensus 5 ~~~~~Ln~~l~~E~~a~~~Y~~~a~~~~~~~~~~~~~~f~-~~a~ee~~Ha~~lae~i~~lG 65 (153)
T cd00907 5 KVIEALNKALTGELTAINQYFLHARMLEDWGLEKLAERFR-KESIEEMKHADKLIERILFLE 65 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHH-HHHHHHHHHHHHHHHHHHHcC
Confidence 4678999999999999999999999998889999999999 788888899999998888764
No 50
>PF00210 Ferritin: Ferritin-like domain; InterPro: IPR008331 Ferritin is one of the major non-haem iron storage proteins in animals, plants, and microorganisms []. It consists of a mineral core of hydrated ferric oxide, and a multi-subunit protein shell that encloses the former and assures its solubility in an aqueous environment. In animals the protein is mainly cytoplasmic and there are generally two or more genes that encode closely related subunits - in mammals there are two subunits which are known as H(eavy) and L(ight). In plants ferritin is found in the chloroplast []. This entry represents the main structural domain of ferritin. The domain is also found in other ferritin-like proteins such as members of the DNA protection during starvation (DPS) family and bacterioferritins.; GO: 0008199 ferric iron binding, 0006879 cellular iron ion homeostasis; PDB: 1N1Q_C 4DYU_E 2YJJ_D 2YJK_B 2VXX_B 3FVB_A 2WLU_A 2XGW_A 2WLA_A 1Z4A_D ....
Probab=85.75 E-value=5.6 Score=31.23 Aligned_cols=58 Identities=26% Similarity=0.336 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHH
Q 024844 181 YAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLR 239 (261)
Q Consensus 181 ea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~ 239 (261)
+.+...+..|......+..++-.+...+-+.+..|++ ...++..++..++.+++..+-
T Consensus 2 ~~Ln~~l~~e~~~~~~y~~~~~~~~~~~~~~l~~~~~-~~a~e~~~h~~~l~e~i~~lg 59 (142)
T PF00210_consen 2 EALNEQLALELQASQQYLNMHWNFDGPNFPGLAKFFQ-DQAEEEREHADELAERILMLG 59 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHhH-HHHHHHHHHHHHHHHHHhcCC
Confidence 5788899999999999999999999888899999999 788888888888888777653
No 51
>cd01046 Rubrerythrin_like rubrerythrin-like, diiron-binding domain. Rubrerythrin-like domain, similar to rubrerythrin, a nonheme iron binding domain found in many air-sensitive bacteria and archaea, and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system. The rubrerythrin protein has two domains, a binuclear metal center located within a four-helix bundle of the rubrerythrin domain, and a rubredoxin domain. The Rubrerythrin-like domains in this CD are singular domains (no C-terminus rubredoxin domain) and are phylogenetically distinct from rubrerythrin domains of rubrerythrin-rubredoxin proteins.
Probab=84.81 E-value=6.8 Score=31.57 Aligned_cols=59 Identities=20% Similarity=0.244 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHH
Q 024844 179 ALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQL 238 (261)
Q Consensus 179 ~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L 238 (261)
..+.+..++..|......|.....+|..++.+.+.+++. ....+...|-+.+.+++..+
T Consensus 2 ~~~~L~~a~~~E~~a~~~Y~~~a~~a~~eG~~~~A~~f~-~~a~eE~~HA~~~~~~l~~i 60 (123)
T cd01046 2 LEEDLEANFKGETTEVGMYLAMARVAQREGYPEVAEELK-RIAMEEAEHAARFAELLGKV 60 (123)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHCCCHHHHHHHH-HHHHHHHHHHHHHHHHHhcC
Confidence 467899999999999999999999999999999999999 88888888888888766543
No 52
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain. Rubrerythrin domain is a nonheme iron binding domain found in many air-sensitive bacteria and archaea and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The homodimeric rubrerythrin protein contains a binuclear metal center located within a four helix bundle. Many, but not all, rubrerythrin proteins have a second domain with a rubredoxin-like hexacoordinated iron center. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system but its function is still poorly understood.
Probab=84.40 E-value=11 Score=30.56 Aligned_cols=60 Identities=17% Similarity=0.228 Sum_probs=52.1
Q ss_pred HHHHHHHHHHhHHHHH-HHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024844 93 DECEAAINEQINVEYN-VSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNL 154 (261)
Q Consensus 93 ~~~e~aLNeQIn~El~-ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~ 154 (261)
..+...|...+..|.. +.-.|..++..+.. .+-...+.||.....+|..|+..|-+.+..
T Consensus 72 ~~~~~~l~~~~~~E~~e~~~~y~~~~~~A~~--e~d~~~~~~f~~i~~~E~~H~~~l~~~l~~ 132 (134)
T cd01041 72 GDTLENLKAAIAGETYEYTEMYPEFAEVAEE--EGFKEAARSFEAIAEAEKVHAERYKKALEN 132 (134)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3667888889999985 77999999999995 599999999999999999999998766543
No 53
>PLN00179 acyl- [acyl-carrier protein] desaturase
Probab=80.31 E-value=18 Score=35.32 Aligned_cols=149 Identities=16% Similarity=0.193 Sum_probs=106.0
Q ss_pred CcHHHHH-HHHHHhHHHHHHHHHHHHHHhhcc-cCCcc--chhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCC
Q 024844 91 YEDECEA-AINEQINVEYNVSYVYHALYAYFD-RDNIA--LRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQ 166 (261)
Q Consensus 91 ~s~~~e~-aLNeQIn~El~ASy~YlsmAa~Fd-rd~v~--L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~ 166 (261)
+++.+.- ++-.-|..|---+|+-... .+|. +|.-| -..-+.|-+...-||-.|+.-|-+|+.--| +|....|+.
T Consensus 115 Lpd~~~v~LvgdmiTEeaLPtY~~~Ln-~~~gv~d~tg~~~~~W~~Wvr~WTAEENRHgdlL~~YLylTg-rVDm~~iE~ 192 (390)
T PLN00179 115 LPDDYFVVLVGDMITEEALPTYQTMLN-TLDGVRDETGASATPWARWTRAWTAEENRHGDLLNKYLYLSG-RVDMRQIEK 192 (390)
T ss_pred CChhhhhhhhhcchhhhcchHHHHHHH-HhcccccccCCCCCchhhhccccccccchHHHHHHHHHhhcc-CcCHHHHHH
Confidence 4444433 3344556565555544332 2231 12222 245889999999999999999999998754 566555553
Q ss_pred CC-----CCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHHhc
Q 024844 167 PP-----SEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMV 241 (261)
Q Consensus 167 P~-----~~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~r~ 241 (261)
-. ..|+.....++...|-..-=.|+...-+-.+..++|.+.+|+.+...+. ..-.++-.|+.-..+++..+=.+
T Consensus 193 t~q~li~~G~d~~~~~~py~~~vYtSFQErAT~VSH~NTarlA~~~gDp~la~icg-~IAaDE~rHe~fY~~iV~~~le~ 271 (390)
T PLN00179 193 TIQYLIGSGMDPKTENNPYLGFIYTSFQERATFISHGNTARLAKEHGDAKLAKICG-TIAADEKRHETAYTRIVEKLFEI 271 (390)
T ss_pred HHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHhcCChHHHHHHH-HHhccHHHHHHHHHHHHHHHHhh
Confidence 11 2444332357899999998899999999999999999999999999998 88888889988888888876554
Q ss_pred c
Q 024844 242 G 242 (261)
Q Consensus 242 g 242 (261)
.
T Consensus 272 d 272 (390)
T PLN00179 272 D 272 (390)
T ss_pred C
Confidence 3
No 54
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyub
Probab=79.27 E-value=15 Score=27.10 Aligned_cols=53 Identities=21% Similarity=0.185 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHH
Q 024844 182 AMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQL 238 (261)
Q Consensus 182 a~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L 238 (261)
++..++..|......+..++..+. |+.+..++. .+..+...|.+.+..++..+
T Consensus 2 ~L~~~~~~E~~a~~~y~~~~~~~~---~~~~~~~~~-~~a~~E~~H~~~l~~~~~~~ 54 (130)
T cd00657 2 LLNDALAGEYAAIIAYGQLAARAP---DPDLKDELL-EIADEERRHADALAERLREL 54 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC---CHHHHHHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 567788899999999988888764 899999999 88889999999999988775
No 55
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain. This uncharacterized bacterial protein family has a ferritin-like domain similar to that of the manganese catalase protein of Lactobacillus plantarum and the bll3758 protein of Bradyrhizobium japonicum. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=77.85 E-value=11 Score=31.02 Aligned_cols=55 Identities=11% Similarity=0.068 Sum_probs=47.2
Q ss_pred cHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHH
Q 024844 92 EDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEY 151 (261)
Q Consensus 92 s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y 151 (261)
.....+.|...+..|-.+...|..++...+ =+..-..|...+.+|.+|...|-+.
T Consensus 99 ~~~~~~~L~~~~~~E~~ai~~Y~~~~~~~~-----d~~~r~ll~~I~~eE~~H~~~L~~~ 153 (154)
T cd07908 99 GESIKEMLKLDIASEKAAIAKYKRQAETIK-----DPYIRALLNRIILDEKLHIKILEEL 153 (154)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445677999999999999999999999765 2678899999999999999988653
No 56
>PF09537 DUF2383: Domain of unknown function (DUF2383); InterPro: IPR019052 This entry represents a functionally uncharacterised ferritin like domain.; PDB: 3FSE_B.
Probab=76.87 E-value=20 Score=27.88 Aligned_cols=57 Identities=16% Similarity=0.179 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHH
Q 024844 179 ALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLR 239 (261)
Q Consensus 179 ~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~ 239 (261)
..+.+...+..++.....|.+..+. .+|+.+..+|+ .|..+-..++..|..+|..+-
T Consensus 2 ~i~~Ln~Ll~~~~d~~~~Y~~a~~~---~~~~~lk~~f~-~~~~~~~~~~~~L~~~i~~~G 58 (111)
T PF09537_consen 2 TIEALNDLLKGLHDGIEGYEKAAEK---AEDPELKSLFQ-EFAQERQQHAEELQAEIQELG 58 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-----SHHHHHHHH-HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---CCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHcC
Confidence 3567777777777777777766554 46999999999 999999999999998888774
No 57
>cd01055 Nonheme_Ferritin nonheme-containing ferritins. Nonheme Ferritin domain, found in archaea and bacteria, is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The ferritin protein shell is composed of 24 protein subunits arranged in 432 symmetry. Each protein subunit, a four-helix bundle with a fifth short terminal helix, contains a dinuclear ferroxidase center (H type). Unique to this group of proteins is a third metal site in the ferroxidase center. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite.
Probab=73.67 E-value=17 Score=29.75 Aligned_cols=59 Identities=10% Similarity=-0.030 Sum_probs=51.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024844 94 ECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNL 154 (261)
Q Consensus 94 ~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~ 154 (261)
.+.++|...++.|..+...|..++..+.+ .+-+..+.||..-.+++.+|..++-+++..
T Consensus 80 ~~~~~l~~al~~E~~~~~~~~~l~~~A~~--~~D~~~~~~l~~~l~~q~e~~~~~~~~l~~ 138 (156)
T cd01055 80 SLLEVFEAALEHEQKVTESINNLVDLALE--EKDYATFNFLQWFVKEQVEEEALARDILDK 138 (156)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46688999999999999999999999995 378899999999999999999888888773
No 58
>PF13668 Ferritin_2: Ferritin-like domain
Probab=73.25 E-value=20 Score=28.85 Aligned_cols=56 Identities=16% Similarity=0.234 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----hhCCChhHHHHhHHhhHHHHHHHHHHHHHHHH
Q 024844 180 LYAMELALSLEKLTNEKLLSLHSVA-----DRNNDPQMAEFVESEFLGEQVEAINKIAKYVS 236 (261)
Q Consensus 180 lea~e~AL~lEk~vt~~l~~L~~lA-----~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~ 236 (261)
.+++..||.+|..-.+-|.....-. ....|..+.++++ .+..++..|++.+.+.+.
T Consensus 3 ~~iL~~Al~lE~l~~~fY~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~E~~H~~~l~~~l~ 63 (137)
T PF13668_consen 3 LDILNFALNLEYLEADFYQQAAEGFTLQDNKAALDPEVRDLFQ-EIADQEQGHVDFLQAALE 63 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCChhhhhccCCHHHHHHHH-HHHHHHHHHHHHHHHHhc
Confidence 5789999999999999998887643 3568999999999 999999999999999886
No 59
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=67.51 E-value=71 Score=28.55 Aligned_cols=92 Identities=18% Similarity=0.303 Sum_probs=52.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q 024844 126 ALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHS-VA 204 (261)
Q Consensus 126 ~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~P~~~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~-lA 204 (261)
-...|+.||++.|.-|.++|.+|.+.-..-+ |..+. |+...+|...+. -++.+-+.|. +|
T Consensus 20 ~~~el~~f~keRa~iE~eYak~L~kLak~~~----------~~~e~-----gsl~~aw~~i~~----e~e~~a~~H~~la 80 (239)
T cd07647 20 MCKELEDFLKQRAKAEEDYGKALLKLSKSAG----------PGDEI-----GTLKSSWDSLRK----ETENVANAHIQLA 80 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccC----------CCCcc-----chHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 3567999999999999999999998865532 11111 334445444333 2233333333 22
Q ss_pred hhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHH
Q 024844 205 DRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLR 239 (261)
Q Consensus 205 ~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~ 239 (261)
..-.+. ... +. .|..++.+.-+.+.+.+..+.
T Consensus 81 ~~L~~~-v~~-l~-~~~~~~~~~~K~~~~~~~k~q 112 (239)
T cd07647 81 QSLREE-AEK-LE-EFREKQKEERKKTEDIMKRSQ 112 (239)
T ss_pred HHHHHH-HHH-HH-HHHHHHHHHHHHHHHHHHHHH
Confidence 222221 222 44 466677777777776665553
No 60
>COG2833 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.32 E-value=1.1e+02 Score=28.40 Aligned_cols=122 Identities=16% Similarity=0.155 Sum_probs=80.5
Q ss_pred CcHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCCC
Q 024844 91 YEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSE 170 (261)
Q Consensus 91 ~s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~P~~~ 170 (261)
-...-.+.|..-...|++|.+.=|-.++-|. ++.+.-+-.|+ +-|.||-.|=.-+-+.+...|-. ..+.++..-
T Consensus 72 t~~g~aallHAiAHIEfNAInLaLDa~~RF~--~~p~~F~~dWm-~VA~EE~~HF~Ll~~~L~~LG~~--YGDfpaHdg- 145 (268)
T COG2833 72 TTHGRAALLHAIAHIEFNAINLALDAVYRFA--PLPLQFYDDWM-RVADEEAKHFRLLRERLKSLGYD--YGDFPAHDG- 145 (268)
T ss_pred chhHHHHHHHHHHHHhhhhHHHHHHHHHHhc--CCcHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCCC--cCCCccccc-
Confidence 3344577888888999999999999999999 66776455554 45899999999999999999943 334333321
Q ss_pred CCccccCCHHHHHHH---------HHH---HHH---HHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHH
Q 024844 171 FDHAEKGDALYAMEL---------ALS---LEK---LTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINK 230 (261)
Q Consensus 171 f~~~e~~d~lea~e~---------AL~---lEk---~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~ 230 (261)
..+|.+. +|. +|- .+|-.++ ..-.+.+|..++..|+ -++.+++.|+..
T Consensus 146 --------Lw~~a~~T~~dl~~RmalVprvLEARGLDatP~l~---aK~~~~gD~~~~~iLd-IIlrDEigHVai 208 (268)
T COG2833 146 --------LWQMAEATANDLLARMALVPRVLEARGLDATPSLR---AKLAETGDSEAAAILD-IILRDEIGHVAI 208 (268)
T ss_pred --------HHHHHHHhhcCHHHHhhhhhhHHhhccCCCCHHHH---HHHHHcCchHHHHHHH-HHHhccccceee
Confidence 1122111 111 010 0122222 1123579999999999 999999988753
No 61
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=67.11 E-value=24 Score=38.39 Aligned_cols=57 Identities=21% Similarity=0.233 Sum_probs=50.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHH
Q 024844 177 GDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQ 237 (261)
Q Consensus 177 ~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~ 237 (261)
.++.++++.|+.+|+...+-|..+.+. .+|+.+.+++. ++-+++.+|.+.+.+++..
T Consensus 859 ~~~~eil~~Ai~mE~~g~~FY~~~A~~---a~~~~~K~lF~-~LA~eE~~H~~~l~~~~~~ 915 (1006)
T PRK12775 859 AAALEAIRTAFEIELGGMAFYARAAKE---TSDPVLKELFL-KFAGMEQEHMATLARRYHA 915 (1006)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHH---cCCHHHHHHHH-HHHHHHHHHHHHHHHHHhh
Confidence 468999999999999999988877654 58999999999 9999999999999888754
No 62
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=67.04 E-value=78 Score=29.07 Aligned_cols=30 Identities=13% Similarity=0.252 Sum_probs=26.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 024844 127 LRGLAKFFKESSEEEREHAEKFMEYQNLRG 156 (261)
Q Consensus 127 L~GfAkfF~~~S~EEreHAekLi~Y~n~RG 156 (261)
.+-|+.||+++|.=|.++|..|.+.-.+-+
T Consensus 28 ~kel~~f~keRa~iEe~Yak~L~kLak~~~ 57 (269)
T cd07673 28 TKELSDFIRERATIEEAYSRSMTKLAKSAS 57 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 456899999999999999999998877654
No 63
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=66.06 E-value=64 Score=29.09 Aligned_cols=31 Identities=16% Similarity=0.300 Sum_probs=26.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 024844 127 LRGLAKFFKESSEEEREHAEKFMEYQNLRGG 157 (261)
Q Consensus 127 L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG 157 (261)
..-|+.||++.|.-|.++|..|.+...+-.+
T Consensus 21 ~~el~~f~keRa~IEe~Yak~L~kLakk~~~ 51 (261)
T cd07648 21 VKELADFLRERATIEETYSKALNKLAKQASN 51 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4569999999999999999999998776544
No 64
>PF14530 DUF4439: Domain of unknown function (DUF4439); PDB: 2IB0_B.
Probab=63.85 E-value=84 Score=26.01 Aligned_cols=117 Identities=18% Similarity=0.194 Sum_probs=78.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCCCCCcc-cc
Q 024844 98 AINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEFDHA-EK 176 (261)
Q Consensus 98 aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~P~~~f~~~-e~ 176 (261)
+|+..+..|..+.|.|=..+.+.+-+ ...--.....+.|...+.+...+..+|+.+... ...|.-+ +.
T Consensus 1 AL~~al~aE~aAvy~ygv~~a~~~~~------~r~~~~~~~~~HR~rRd~l~~~l~~~g~~~p~~-----~aaY~lP~~v 69 (131)
T PF14530_consen 1 ALQAALAAEHAAVYGYGVAAARLDGD------RRAAARAALAAHRARRDALAAALRAAGATPPPP-----EAAYQLPFPV 69 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS-GG------GHHHHHHHHHHHHHHHHHHHHHHHHTT------------SS---SS--
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC-----CCCCCCCCCC
Confidence 47788899999999999999998742 444556667778888999999999999887532 2222221 23
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHH
Q 024844 177 GDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAIN 229 (261)
Q Consensus 177 ~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik 229 (261)
.|+..+..++..+|..+...+..+.. ..|...+.|--....+--+....
T Consensus 70 ~d~~sa~~la~~lE~~~a~aw~~lv~----a~~~~~R~~av~aL~~aA~ra~~ 118 (131)
T PF14530_consen 70 TDPASAAALAAALEDDCAAAWRALVA----ATDPALRRFAVDALTEAAVRAAR 118 (131)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHHH------SHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHh----cCChhHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999998872 47788888877444443443333
No 65
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=62.92 E-value=1.1e+02 Score=27.12 Aligned_cols=32 Identities=28% Similarity=0.400 Sum_probs=27.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 024844 126 ALRGLAKFFKESSEEEREHAEKFMEYQNLRGG 157 (261)
Q Consensus 126 ~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG 157 (261)
-+..|..||++.|.=|.++|.+|-+.-.+-++
T Consensus 20 ~~~el~~f~keRa~iE~eYak~L~kLakk~~~ 51 (236)
T cd07651 20 TLEELRSFYKERASIEEEYAKRLEKLSRKSLG 51 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccccC
Confidence 46679999999999999999999987766554
No 66
>cd07649 F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Growth Arrest Specific protein 7. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Growth Arrest Specific protein 7 (GAS7) is mainly expressed in the brain and is required for neurite outgrowth. It may also play a role in the protection and migration of embryonic stem cells. Treatment-related acute myeloid leukemia (AML) has been reported resulting from mixed-lineage leukemia (MLL)-GAS7 translocations as a complication of primary cancer treatment. GAS7 contains an N-terminal SH3 domain, followed by a WW domain, and a central F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=59.20 E-value=1.4e+02 Score=26.98 Aligned_cols=95 Identities=14% Similarity=0.150 Sum_probs=55.8
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q 024844 126 ALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHS-VA 204 (261)
Q Consensus 126 ~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~P~~~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~-lA 204 (261)
...-++.||++.|.=|.+.|.+|.+.-..-+|. |.. |+...++..... -++.+-++|. ++
T Consensus 20 ~~~el~~fl~ERa~IEe~Yak~L~klak~~~~~--------~e~-------Gtl~~sw~~~~~----e~E~~a~~H~~la 80 (233)
T cd07649 20 MQKEMAEFIRERIKIEEEYAKNLSKLSQSSLAA--------QEE-------GTLGEAWAQVKK----SLADEAEVHLKFS 80 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC--------CCC-------ChHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 345699999999999999999999987543322 221 333444443322 2334444443 22
Q ss_pred hhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHHhc
Q 024844 205 DRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMV 241 (261)
Q Consensus 205 ~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~r~ 241 (261)
....+ ....=|. .|..+|.+..+.+.+.+..+.+.
T Consensus 81 ~~L~~-ev~~~l~-~f~~~~~k~~k~~e~~~~k~~K~ 115 (233)
T cd07649 81 SKLQS-EVEKPLL-NFRENFKKDMKKLDHHIADLRKQ 115 (233)
T ss_pred HHHHH-HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 22111 1112244 56667888888888888776653
No 67
>PF06175 MiaE: tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE); InterPro: IPR010386 This family consists of several bacterial tRNA-(MSIO[6]A)-hydroxylase (MiaE) proteins. The modified nucleoside 2-methylthio-N-6-isopentenyl adenosine (ms2i6A) is present at position 37 (3' of the anticodon) of tRNAs that read codons beginning with U except tRNA(I,V Ser) in Escherichia coli. Salmonella typhimurium 2-methylthio-cis-ribozeatin (ms2io6A) is found in tRNA, probably in the corresponding species that have ms2i6A in E. coli. The miaE gene is absent in E. coli, a finding consistent with the absence of the hydroxylated derivative of ms2i6A in this species [].; PDB: 2ITB_B.
Probab=58.57 E-value=1.5e+02 Score=27.24 Aligned_cols=143 Identities=17% Similarity=0.179 Sum_probs=75.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHH-HhhcccCCcc--------------------------------------chhHHHH
Q 024844 93 DECEAAINEQINVEYNVSYVYHAL-YAYFDRDNIA--------------------------------------LRGLAKF 133 (261)
Q Consensus 93 ~~~e~aLNeQIn~El~ASy~Ylsm-Aa~Fdrd~v~--------------------------------------L~GfAkf 133 (261)
......|-++.+.|..|+..=++| ..|....+.+ .+.+..-
T Consensus 26 ~nl~~lL~DHa~CE~KAA~tAm~li~rY~~~~~~~~~ll~~~~py~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~eLv~~ 105 (240)
T PF06175_consen 26 ANLPTLLIDHANCEKKAAQTAMSLIRRYAVDKESGQALLAWLKPYEDFVYRKDGDIQKNQLSKSLQPKSHYPEKEELVDK 105 (240)
T ss_dssp H--HHHHHHHHHHHHHHHHHHHHHHHHTT---------------------------------------------HHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHH
Confidence 556778999999999999887777 5554221111 1223344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCCC---CCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCh
Q 024844 134 FKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSE---FDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDP 210 (261)
Q Consensus 134 F~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~P~~~---f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~ 210 (261)
+-..+.||+.|=+++++-+.+|| +.+.++.+++-- ....-++.+...+..-|--=.-=..+=.....+|... |.
T Consensus 106 Ms~LarEEL~HFeqVl~im~~RG--i~l~~~~~d~Ya~~L~k~vR~~ep~~lvDrLLv~AlIEARSCERF~lLa~~l-D~ 182 (240)
T PF06175_consen 106 MSRLAREELHHFEQVLEIMKKRG--IPLGPDRKDRYAKGLRKHVRKGEPERLVDRLLVGALIEARSCERFALLAEHL-DE 182 (240)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT-----------SHHHHHHTTS-SSTTHHHHHHHHHHHHHHHHHHHHHHHHGGGS--H
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC--CCCCCCCcCHHHHHHHHhccCCchHhHHHHHHHHHhHhhhhHHHHHHHHHhh-CH
Confidence 55679999999999999999999 555555554310 0001112222222222211111122223345566666 99
Q ss_pred hHHHHhHHhhHHHHHHHHHHHHHHHHHHHhcc
Q 024844 211 QMAEFVESEFLGEQVEAINKIAKYVSQLRMVG 242 (261)
Q Consensus 211 ~t~~FLe~~FL~EQve~ik~l~~~l~~L~r~g 242 (261)
.+..|-. .++..+..|-. +++.--+...
T Consensus 183 eL~~FY~-~Ll~SEArHy~---~yl~LA~~y~ 210 (240)
T PF06175_consen 183 ELAKFYR-SLLRSEARHYQ---DYLKLARQYF 210 (240)
T ss_dssp HHHHHHH-HHHHHHHHHHH---HHHHHHCCCS
T ss_pred HHHHHHH-HHHHHHhhHHH---HHHHHHHHHC
Confidence 9999999 78877666643 4455444443
No 68
>cd07674 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH domain Only 1 (FCHO1) may be involved in clathrin-coated vesicle formation. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO2 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=56.37 E-value=1.6e+02 Score=26.77 Aligned_cols=27 Identities=19% Similarity=0.318 Sum_probs=23.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024844 127 LRGLAKFFKESSEEEREHAEKFMEYQN 153 (261)
Q Consensus 127 L~GfAkfF~~~S~EEreHAekLi~Y~n 153 (261)
-.-|+.||+++|.=|.++|..|.+.-.
T Consensus 21 ~kel~~flkeRa~IEe~Yak~L~klak 47 (261)
T cd07674 21 TKELADFVRERAAIEETYSKSMSKLSK 47 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345899999999999999999988874
No 69
>PF07875 Coat_F: Coat F domain; InterPro: IPR012851 The Coat F proteins contribute to the Bacillales spore coat. They occur multiple times in the genomes in which they are found. Bacillus subtilis endospore protein coats protect them and may play a role in their germination []. Spore coat protein F, on the outer surface of the endospore, is one of a suite of proteins that could be used to differentiate between members of the Bacillus genus [].
Probab=55.34 E-value=72 Score=22.54 Aligned_cols=56 Identities=16% Similarity=0.165 Sum_probs=47.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCe
Q 024844 98 AINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGK 158 (261)
Q Consensus 98 aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~ 158 (261)
.++.-++.+=.++..|...+.=+. =|.+-..|.....+...++..+.+|++++|=-
T Consensus 5 i~~d~L~~~K~~~~~y~~a~~E~~-----np~lR~~l~~~~~~~~~~~~~l~~~m~~kGwY 60 (64)
T PF07875_consen 5 IANDLLNSEKAAARNYATAALECA-----NPELRQILQQILNECQQMQYELFNYMNQKGWY 60 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 456677778888888888887665 46899999999999999999999999999943
No 70
>TIGR02284 conserved hypothetical protein. Members of this protein family are found mostly in the Proteobacteria, although one member is found in the the marine planctomycete Pirellula sp. strain 1. The function is unknown.
Probab=54.23 E-value=43 Score=27.64 Aligned_cols=36 Identities=22% Similarity=0.470 Sum_probs=31.2
Q ss_pred HHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHH
Q 024844 203 VADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLR 239 (261)
Q Consensus 203 lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~ 239 (261)
.|.+.+|+.+..+++ .|..+-...+.+|..+|..+-
T Consensus 22 aae~v~~~~lk~~f~-~~~~~~~~~~~eL~~~v~~lG 57 (139)
T TIGR02284 22 SAEEVKDPELATLFR-RIAGEKSAIVSELQQVVASLG 57 (139)
T ss_pred HHHHCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHhC
Confidence 345669999999999 999999999999999888875
No 71
>cd07909 YciF YciF bacterial stress response protein, ferritin-like iron-binding domain. YciF is a bacterial protein of unknown function that is up-regulated when bacteria experience stress conditions, and is highly conserved in a broad range of bacterial species. YciF has a ferritin-like domain. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=53.77 E-value=1.4e+02 Score=25.24 Aligned_cols=128 Identities=16% Similarity=0.112 Sum_probs=91.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCC---------
Q 024844 96 EAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQ--------- 166 (261)
Q Consensus 96 e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~--------- 166 (261)
+..|.+....|-++.-.--.|+. ....|-+..-|..+..|=+.|..+|-+=+...|+.|.-...+.
T Consensus 5 ~~~L~d~y~aE~Q~~~al~~m~~-----~a~~peLk~~l~~H~~eT~~qi~rLe~if~~lg~~~~~~~c~~m~gli~e~~ 79 (147)
T cd07909 5 VHELRDLYSAEKQLVKALPKMAK-----AATSEELKEAFESHLEETEGQVERLEQIFESLGEKPEGKKCKAMEGLIKEAE 79 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCcchHHHHHHHHHH
Confidence 34455555556555555555552 3468899999999999999999999999999998876432110
Q ss_pred -CCCCCCccccCCHHHHH--HHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHH
Q 024844 167 -PPSEFDHAEKGDALYAM--ELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIA 232 (261)
Q Consensus 167 -P~~~f~~~e~~d~lea~--e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~ 232 (261)
-..++.+ +.+.++. -.+...|..=+..|..|+.+|..-++......|+ .-|+|....-++|.
T Consensus 80 ~~~~~~~~---~~v~Da~li~aaq~vEHyEIA~YgtL~~~A~~lG~~e~a~lL~-~~L~EE~~~d~~lt 144 (147)
T cd07909 80 ELIEETGD---SAVLDAALIAAAQKVEHYEIAGYGTLRALAKLLGLDDAADLLQ-ETLDEEKATDRKLT 144 (147)
T ss_pred HHHhccCC---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH-HHHHHHHHHHHHHH
Confidence 0011211 2356666 7788899999999999999999999999998888 66666554444443
No 72
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca
Probab=51.27 E-value=1.9e+02 Score=26.18 Aligned_cols=92 Identities=15% Similarity=0.202 Sum_probs=53.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHH-cCCeeeecccCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHH-H
Q 024844 126 ALRGLAKFFKESSEEEREHAEKFMEYQNL-RGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHS-V 203 (261)
Q Consensus 126 ~L~GfAkfF~~~S~EEreHAekLi~Y~n~-RGG~v~l~~I~~P~~~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~-l 203 (261)
-..-+..||++.|.-|.+.|.+|.+.-.+ .+|.+ .. |+...+|...+ .| ++.+-.+|. +
T Consensus 20 ~~~el~~f~kERA~IE~~YaK~L~kLskk~~~g~~--------E~-------GTl~~sw~~~~-~E---~e~~a~~H~~l 80 (240)
T cd07672 20 NCKEFEDFLKERASIEEKYGKELLNLSKKKPCGQT--------EI-------NTLKRSLDVFK-QQ---IDNVGQSHIQL 80 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc--------cc-------chHHHHHHHHH-HH---HHHHHHHHHHH
Confidence 35568999999999999999999988765 33221 11 33444444332 23 233333333 2
Q ss_pred HhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHH
Q 024844 204 ADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLR 239 (261)
Q Consensus 204 A~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~ 239 (261)
+..-.+ .+. -++ .|...|-+.-+.+...+..+.
T Consensus 81 a~~L~~-~~~-~~~-~f~~~qk~~rKk~e~~~ek~~ 113 (240)
T cd07672 81 AQTLRD-EAK-KME-DFRERQKLARKKIELIMDAIH 113 (240)
T ss_pred HHHHHH-HHH-HHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 222222 111 355 677777777777777666664
No 73
>cd01048 Ferritin_like_AB2 Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria, subgroup 2 (Ferritin_like_AB2). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. The conserved residues of a diiron center are present within the putative active site.
Probab=50.82 E-value=69 Score=26.15 Aligned_cols=53 Identities=15% Similarity=0.154 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHH
Q 024844 180 LYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLR 239 (261)
Q Consensus 180 lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~ 239 (261)
.+++..|++.|+....-|..+++.+. ....+. .+...+.+|++.+..++.+..
T Consensus 2 ~~~L~~Ale~Ek~a~~~Y~~~~~k~~------~~~~F~-~la~~E~~H~~~l~~L~~~~~ 54 (135)
T cd01048 2 IAALLYALEEEKLARDVYLALYEKFG------GLRPFS-NIAESEQRHMDALKTLLERYG 54 (135)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhc------CcchHH-HHHHHHHHHHHHHHHHHHHcC
Confidence 36889999999999999999998763 344555 678899999999988887654
No 74
>cd07671 F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 1 (PSTPIP1), also known as CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. F-BAR
Probab=48.64 E-value=2.1e+02 Score=25.93 Aligned_cols=92 Identities=14% Similarity=0.234 Sum_probs=56.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHH-HHh
Q 024844 127 LRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHS-VAD 205 (261)
Q Consensus 127 L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~P~~~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~-lA~ 205 (261)
..-|..||++.+.-|.++|.+|.+...+-+|... + |+...+|...+. | ++.+-++|. ++.
T Consensus 21 c~el~~f~keRa~iE~~Yak~L~kl~kk~~~~~e----------~-----gTl~~a~~~~~~-e---~e~~a~~H~~ia~ 81 (242)
T cd07671 21 CKDVEELLKQRAQAEERYGKELVQIARKAGGQTE----------I-----NTLKASFDQLKQ-Q---IENIGNSHIQLAG 81 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccc----------c-----hHHHHHHHHHHH-H---HHHHHHHHHHHHH
Confidence 3458899999999999999999998887665332 1 344455444332 2 223333333 222
Q ss_pred hCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHHh
Q 024844 206 RNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRM 240 (261)
Q Consensus 206 ~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~r 240 (261)
.-.+- .. -|+ .|...|-+.-+.+.+.+..+..
T Consensus 82 ~L~~~-~~-~l~-~f~~~qke~rK~~e~~~eK~qk 113 (242)
T cd07671 82 MLREE-LK-SLE-EFRERQKEQRKKYEAVMERVQK 113 (242)
T ss_pred HHHHH-HH-HHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 22221 22 255 6777888888888777766544
No 75
>PRK10635 bacterioferritin; Provisional
Probab=48.22 E-value=1.2e+02 Score=25.59 Aligned_cols=61 Identities=13% Similarity=0.134 Sum_probs=52.1
Q ss_pred CcHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024844 91 YEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQN 153 (261)
Q Consensus 91 ~s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n 153 (261)
..+.+.+.|..-+..|..+.-.|-.+..+|.. .+=+.-..+|...-.+|-+|...|-..+.
T Consensus 79 ~g~~v~eml~~dl~~E~~ai~~y~e~i~~a~~--~~D~~s~~ll~~iL~dEe~H~~~le~~l~ 139 (158)
T PRK10635 79 IGEDVEEMLRSDLRLELEGAKDLREAIAYADS--VHDYVSRDMMIEILADEEGHIDWLETELD 139 (158)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34688999999999999999999999999994 35667888999999999999998866554
No 76
>cd01056 Euk_Ferritin eukaryotic ferritins. Eukaryotic Ferritin (Euk_Ferritin) domain. Ferritins are the primary iron storage proteins of most living organisms and members of a broad superfamily of ferritin-like diiron-carboxylate proteins. The iron-free (apoferritin) ferritin molecule is a protein shell composed of 24 protein chains arranged in 432 symmetry. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the dinuclear ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite; the protein shell can hold up to 4500 iron atoms. In vertebrates, two types of chains (subunits) have been characterized, H or M (fast) and L (slow), which differ in rates of iron uptake and mineralization. Fe(II) oxidation in the H/M subunits take place initially at the ferroxidase center, a carboxylate-bridged diiron center, located within the subunit four-helix bundle. In a complementary role, negatively charged r
Probab=48.14 E-value=1.4e+02 Score=24.78 Aligned_cols=60 Identities=25% Similarity=0.335 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--CChhHHHHhHHhhHHHHHHHHHHHHHHHHHH
Q 024844 178 DALYAMELALSLEKLTNEKLLSLHSVADRN--NDPQMAEFVESEFLGEQVEAINKIAKYVSQL 238 (261)
Q Consensus 178 d~lea~e~AL~lEk~vt~~l~~L~~lA~~~--~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L 238 (261)
....++...+..|-.....|..+...+... +-+.+..|+. .--.|..+|-.++-+++..+
T Consensus 3 ~i~~~Ln~~i~~El~as~~Yl~~a~~~~~~~~~l~g~a~~f~-~~a~eE~~HA~~l~~~i~~r 64 (161)
T cd01056 3 ECEAALNKQINLELNASYVYLSMAAYFDRDDVALPGFAKFFR-KLSDEEREHAEKLIKYQNKR 64 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccccccchhHHHHHH-HHHHHHHHHHHHHHHHHHHc
Confidence 357889999999999999999999999987 8999999998 66666677777777766654
No 77
>COG4445 MiaE Hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNA [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=46.69 E-value=2e+02 Score=25.26 Aligned_cols=65 Identities=15% Similarity=0.164 Sum_probs=47.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCC
Q 024844 98 AINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPP 168 (261)
Q Consensus 98 aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~P~ 168 (261)
.|-++...|+.|..+-+.+-.-+- +-..+-.-+-..+.||..|-+...+.+..|| +.+-+|++|.
T Consensus 32 lLlDH~~CE~KAa~tAl~li~kY~----~~~~lv~km~~larEEL~HFeqV~eilq~Rn--I~~~~i~asr 96 (203)
T COG4445 32 LLLDHLHCELKAAQTALNLIRKYP----SNTDLVDKMVLLAREELHHFEQVLEILQARN--IPYVPIPASR 96 (203)
T ss_pred ehhhhHHHHHHHHHHHHHHHHHcc----chHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CccccCCccH
Confidence 455677889998887665544443 2245677788889999999999999999999 4444666654
No 78
>PF05974 DUF892: Domain of unknown function (DUF892); InterPro: IPR010287 This domain is found in several hypothetical bacterial proteins of unknown function.; PDB: 4ERU_B 3OGH_A 2GS4_B 2GYQ_B 3HIU_A.
Probab=46.31 E-value=1.5e+02 Score=24.88 Aligned_cols=56 Identities=23% Similarity=0.292 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHH
Q 024844 180 LYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLR 239 (261)
Q Consensus 180 lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~ 239 (261)
.+-++.++..|+...+.+..+...| .||.+..-|+ ..+++-.++++.|..++..+-
T Consensus 7 ~~~L~d~y~aE~q~~~~l~~~~~~a---~~~~L~~~l~-~h~~eT~~q~~rLe~~~~~lg 62 (159)
T PF05974_consen 7 IDELRDLYSAEKQLLKALPKLAEAA---SSPELKAALE-EHLEETEQQIERLEQIFEALG 62 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----SSHHHHHHHH-HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhC---CCHHHHHHHH-HHHHHHHHHHHHHHHHHHHcc
Confidence 5677888999998888888777654 6699999999 889998888888888887764
No 79
>cd07909 YciF YciF bacterial stress response protein, ferritin-like iron-binding domain. YciF is a bacterial protein of unknown function that is up-regulated when bacteria experience stress conditions, and is highly conserved in a broad range of bacterial species. YciF has a ferritin-like domain. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=46.14 E-value=1.6e+02 Score=24.77 Aligned_cols=55 Identities=16% Similarity=0.201 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHH
Q 024844 180 LYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQL 238 (261)
Q Consensus 180 lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L 238 (261)
.+-++.+...|+...+.+..+. ...++|.+.+-|+ .-+.+=.+++..|..++..+
T Consensus 5 ~~~L~d~y~aE~Q~~~al~~m~---~~a~~peLk~~l~-~H~~eT~~qi~rLe~if~~l 59 (147)
T cd07909 5 VHELRDLYSAEKQLVKALPKMA---KAATSEELKEAFE-SHLEETEGQVERLEQIFESL 59 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHhCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHc
Confidence 5678889999999888888876 4558999999999 77888888888888887766
No 80
>PRK10304 ferritin; Provisional
Probab=45.51 E-value=1.8e+02 Score=24.74 Aligned_cols=60 Identities=10% Similarity=0.203 Sum_probs=51.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHH
Q 024844 178 DALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQL 238 (261)
Q Consensus 178 d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L 238 (261)
.+..++...+..|-.....|..+...+...+=+.++.|+. .=-.|+.+|-.+|-+++...
T Consensus 5 ~i~~~Ln~qin~El~As~~Yl~ma~~~~~~gl~g~A~~f~-~qs~EE~~HA~kl~~~i~~r 64 (165)
T PRK10304 5 EMIEKLNEQMNLELYSSLLYQQMSAWCSYHTFEGAAAFLR-RHAQEEMTHMQRLFDYLTDT 64 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHH-HHHHHHHHHHHHHHHHHHHc
Confidence 4678999999999999999999999999999999999988 55666677777777777654
No 81
>cd07658 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase TRaffic INducer (NOSTRIN). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Nitric Oxide Synthase TRaffic INducer (NOSTRIN) is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). NOSTRIN facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of NOSTRIN may be correlated to preeclampsia. NOSTRIN contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. The F-BAR domain of NOSTRIN is necessary and sufficient fo
Probab=44.83 E-value=2.1e+02 Score=25.68 Aligned_cols=28 Identities=21% Similarity=0.224 Sum_probs=25.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024844 127 LRGLAKFFKESSEEEREHAEKFMEYQNL 154 (261)
Q Consensus 127 L~GfAkfF~~~S~EEreHAekLi~Y~n~ 154 (261)
.+.++.||++.|.-|.+.|..|.+...+
T Consensus 21 ckel~~f~kERa~IE~~YAK~L~kLa~k 48 (239)
T cd07658 21 CKELATVLQERAELELNYAKGLSKLSGK 48 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5579999999999999999999988764
No 82
>PF11583 AurF: P-aminobenzoate N-oxygenase AurF; PDB: 3CHI_B 3CHT_A 3CHH_A 2JCD_B 3CHU_A.
Probab=43.30 E-value=1.9e+02 Score=26.48 Aligned_cols=107 Identities=13% Similarity=0.175 Sum_probs=64.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCC---------CCCCccccCCHHHHHHHHHHHHHHHHHHHH
Q 024844 128 RGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPP---------SEFDHAEKGDALYAMELALSLEKLTNEKLL 198 (261)
Q Consensus 128 ~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~P~---------~~f~~~e~~d~lea~e~AL~lEk~vt~~l~ 198 (261)
.....|+.....||-.|+..+.+++++-|-.-.+...+.+. ..+. ..+....-.+-.++-.|..++..+.
T Consensus 112 ~~~~~~~~~~i~DE~rH~~mf~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~lv~Ee~i~~~~~ 190 (304)
T PF11583_consen 112 DDAKRYALTEIADEARHSLMFARAINRTGRRRGLAPLPPPYPPRRLLRRLARLL-PPWERGLLFFAFALVAEEIIDAYQR 190 (304)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----S--HHHHHHHHHHHTS--SHHHHHHHHHHHHHHHHHSBHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccCCCCCchHHHHHHHHHhc-ccccchHHHHHHHHHHHHHHHHHHH
Confidence 45677889999999999999999999988111111111100 0100 1111234456667777766665555
Q ss_pred HHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHH
Q 024844 199 SLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQL 238 (261)
Q Consensus 199 ~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L 238 (261)
.+.. ...-+|.....+. --+.|+..|+.-....+...
T Consensus 191 ~~~~--D~~iqP~~r~v~~-iH~~DEaRHi~f~~~~l~~~ 227 (304)
T PF11583_consen 191 EIAR--DETIQPLVRQVMR-IHVRDEARHIAFAREELRRV 227 (304)
T ss_dssp HHHT---SSS-HHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred Hhhc--CCCCChHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 4422 2234778887777 66778899999888887754
No 83
>cd01051 Mn_catalase Manganese catalase, ferritin-like diiron-binding domain. Manganese (Mn) catalase is a member of a broad superfamily of ferritin-like diiron enzymes. While many diiron enzymes catalyze dioxygen-dependent reactions, manganese catalase performs peroxide-dependent oxidation-reduction. Catalases are important antioxidant metalloenzymes that catalyze disproportionation of hydrogen peroxide, forming dioxygen and water. Manganese catalase, a nonheme type II catalase, contains a binuclear manganese cluster that catalyzes the redox dismutation of hydrogen peroxide, interconverting between dimanganese(II) [(2,2)] and dimanganese(III) [(3,3)] oxidation states during turnover. Mn catalases are found in a broad range of microorganisms in microaerophilic environments, including the mesophilic lactic acid bacteria (e.g., Lactobacillus plantarum) and bacterial and archaeal thermophiles (e.g., Thermus thermophilus and Pyrobaculum caldifontis). L. plantarum and T. thermophilus holoenz
Probab=42.09 E-value=1.7e+02 Score=24.74 Aligned_cols=61 Identities=18% Similarity=0.188 Sum_probs=50.6
Q ss_pred cCcHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 024844 90 KYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLR 155 (261)
Q Consensus 90 ~~s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~R 155 (261)
+++..+...|...|..|-.|.-.|..++..-+ | |++-.-+.....+|..|.+.|-+.+.+.
T Consensus 95 ~~~~d~~~~L~~ni~aE~~Ai~~Y~~l~~~~~--D---p~v~~~l~~I~~rE~~H~~~f~~~l~~~ 155 (156)
T cd01051 95 QSSGNLVADLRSNIAAESRARLTYERLYEMTD--D---PGVKDTLSFLLVREIVHQNAFGKALESL 155 (156)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcC--C---HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35678889999999999999999999999877 3 4566666668889999999999887654
No 84
>cd07610 FCH_F-BAR The Extended FES-CIP4 Homology (FCH) or F-BAR (FCH and Bin/Amphiphysin/Rvs) domain, a dimerization module that binds and bends membranes. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. F-BAR domain containing proteins, also known as Pombe Cdc15 homology (PCH) family proteins, include Fes and Fer tyrosine kinases, PACSINs/Syndapins, FCHO, PSTPIP, CIP4-like proteins and srGAPs. Many members also contain an SH3 domain and play roles in endocytosis. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. These tubules have diameters larger than those observed with N-BARs. The F-BAR domains of some members such as NOSTRIN and Rgd1 are important for the subcellular localization of the protein.
Probab=40.38 E-value=2.2e+02 Score=23.77 Aligned_cols=34 Identities=24% Similarity=0.294 Sum_probs=29.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCee
Q 024844 126 ALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKV 159 (261)
Q Consensus 126 ~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v 159 (261)
-+..++.||++.|.-|.++|.+|-+.-..-.+.+
T Consensus 15 ~~~e~~~f~keRa~iE~eYak~L~kLak~~~~~~ 48 (191)
T cd07610 15 LLKDLREFLKKRAAIEEEYAKNLQKLAKKFSKKP 48 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 4567999999999999999999999887766554
No 85
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=40.35 E-value=1.5e+02 Score=25.64 Aligned_cols=59 Identities=15% Similarity=0.211 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHH
Q 024844 179 ALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQL 238 (261)
Q Consensus 179 ~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L 238 (261)
..+-|+.++.-|-.....|.-..++|.+++++.....+. ..-.+...|-+.+...+..+
T Consensus 5 t~~~L~~aF~GEs~a~~rY~~~A~~A~~eG~~~va~lfr-~iA~~E~~HA~~~~~~l~~~ 63 (166)
T COG1592 5 TEENLRKAFAGESMAVMRYLIFAKVAEEEGYPEIARLFR-AIAEAEAVHAKNHLKLLGKL 63 (166)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHCCCHHHHHHHH-HHHHHHHHHHHHHHHHhccc
Confidence 467888999999999999999999999999999999988 67777777776666655543
No 86
>cd01044 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain. Ferritin-like N-terminal domain present in an uncharacterized family of proteins found in bacteria and archaea. These proteins also have a C-terminal CCC1-like transmembrane domain and are thought to be involved in iron and/or manganese transport. This domain has the conserved residues of a diiron center found in other ferritin-like proteins.
Probab=37.42 E-value=2.1e+02 Score=22.70 Aligned_cols=52 Identities=12% Similarity=0.094 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHH
Q 024844 183 MELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQL 238 (261)
Q Consensus 183 ~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L 238 (261)
+...+..|+.-..-|..+... .+|+.....+. ..-+++.+|.+.+..++..+
T Consensus 3 ~~~~~~~E~~~~~~Y~~la~~---~~~~~~k~~f~-~lA~~E~~H~~~~~~~~~~~ 54 (125)
T cd01044 3 LRKFQKDEITEAAIYRKLAKR---EKDPENREILL-KLAEDERRHAEFWKKFLGKR 54 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---cCCHHHHHHHH-HHHHHHHHHHHHHHHHHhhc
Confidence 456788898888888877665 58899999999 89999999999988887764
No 87
>cd01058 AAMH_B Aromatic and Alkene Monooxygenase Hydroxylase, subunit B, ferritin-like diiron-binding domain. Aromatic and Alkene Monooxygenase Hydroxylases, subunit B (AAMH_B). Subunit B (beta) of the soluble hydroxylase of multicomponent, aromatic and alkene monooxygenases are members of a superfamily of ferritin-like iron-storage proteins. AAMH exists as a hexamer (an alpha2-beta2-gamma2 homodimer) with each alpha-subunit housing one nonheme diiron center embedded in a four-helix bundle. The N-terminal domain of the alpha- and noncatalytic beta-subunits possess nearly identical folds; the beta-subunit lacks the C-terminal domain found in the alpha-subunit. Methane monooxygenase is a multicomponent enzyme found in methanotrophic bacteria that catalyzes the hydroxylation of methane and higher alkenes (as large as octane). Phenol monooxygenase, found in a diverse group of bacteria, catalyses the hydroxylation of phenol, chloro- and methyl-phenol and naphthol. Both enzyme systems consis
Probab=36.85 E-value=3.6e+02 Score=25.25 Aligned_cols=110 Identities=12% Similarity=0.007 Sum_probs=70.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCCCC-CccccCCHHHHHHHH--------------HHHHHH
Q 024844 128 RGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEF-DHAEKGDALYAMELA--------------LSLEKL 192 (261)
Q Consensus 128 ~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~P~~~f-~~~e~~d~lea~e~A--------------L~lEk~ 192 (261)
+++..=+.-++.+|..||+.+.-|-...++...-........-| .++.|..+.+.||.+ |..|-.
T Consensus 129 ~~i~n~~~~qa~D~lR~aQ~~~~~~~~l~~~~~~~~~~~~k~~W~~dp~Wq~~R~~~E~~~~~~Dw~E~~va~nlv~e~l 208 (304)
T cd01058 129 TTITNAAAFQAMDKLRIAQDIAYRGLELDGNTPGFDGDAAKEAWEEDPAWQGLRELVEKLLVTYDWGEAFVAQNLVFDPL 208 (304)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhcccCCCCCchHHHHHHhcCchhHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 45666777789999999999998876776653211111111111 223344344444433 344555
Q ss_pred HHHH-HHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHH
Q 024844 193 TNEK-LLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQL 238 (261)
Q Consensus 193 vt~~-l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L 238 (261)
++.. +..+...|..++|..|..++. ....+..++.++....+.-+
T Consensus 209 ~~~l~~~~~~~~Aa~nGD~~t~~l~~-s~q~d~~Rh~~~~~alvk~l 254 (304)
T cd01058 209 VGELVRRELDRLAASNGDTLTPLLTE-FMLDDAQRHRRWTDALVKTA 254 (304)
T ss_pred HHHHHHHHHHHHHHHCCCchhHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 5544 455778899999999998888 67777888888877776644
No 88
>PF11860 DUF3380: Protein of unknown function (DUF3380); InterPro: IPR024408 Proteins in this entry including lysozyme from Enterobacteria phage PRD1 [, ].
Probab=34.92 E-value=76 Score=27.66 Aligned_cols=58 Identities=12% Similarity=0.259 Sum_probs=52.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 024844 97 AAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRG 156 (261)
Q Consensus 97 ~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RG 156 (261)
..||+.-..+=.+.=.+-.|++++. ..|++-...|+.....-|.+|-.-|+.||...+
T Consensus 78 ~~ld~~AAl~SaSWG~fQIMGfn~~--~~Gy~sv~~fv~am~~se~~Ql~af~~Fi~~~~ 135 (175)
T PF11860_consen 78 RALDEEAALESASWGLFQIMGFNWK--ALGYASVEEFVEAMCESEAAQLDAFVRFIKANP 135 (175)
T ss_pred HhhCHHHHHHHhhhhHHHHHHHHHH--HcCCCCHHHHHHHHHhCHHHHHHHHHHHHHcCH
Confidence 4678888888888889999999999 679999999999999999999999999998855
No 89
>PRK13456 DNA protection protein DPS; Provisional
Probab=33.35 E-value=2.9e+02 Score=24.43 Aligned_cols=61 Identities=11% Similarity=-0.014 Sum_probs=47.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHH
Q 024844 177 GDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQL 238 (261)
Q Consensus 177 ~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L 238 (261)
..+++.+..||+.|-...=.|...+..+.--.=.....|++ .-..|...|-+.+.+-|.+|
T Consensus 19 ~~li~lLn~AlA~E~~a~~~Y~~~a~~~~G~~~e~V~e~le-~a~~EEl~HA~~lAeRI~qL 79 (186)
T PRK13456 19 DKLVELLVKNAAAEFTTYYYYTILRAHLIGLEGEGLKEIAE-DARLEDRNHFEALVPRIYEL 79 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcHHHHHHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 46789999999999999999998888888766566668888 55555567777776666555
No 90
>PF03232 COQ7: Ubiquinone biosynthesis protein COQ7; InterPro: IPR011566 Coq7 (also known as Clk-1) is a di-iron carboxylate protein occuring in both prokaryotes and eukaryotes that is essential for ubiquinone biosynthesis [, ]. It has been implicated in the aging process as mutations in the Caenorhabditis elegans gene lead to increased lifespan []. Coq7 is a membrane-bound protein that functions as a monooxygenase to hydroxylate demethoxyubiquinone (2-methoxy-5-methyl-6-polyprenyl-1,4-benzoquinone) in the penultimate step of ubiquinone biosynthesis []. Biochemical studies indicate that NADH can serve directly as a reductant for catalytic activation of dioxygen and substrate oxidation by the enzyme, with no requirement for an additional reductase protein component []. This direct reaction with NADH is so far unique amongst members of the di-iron carboxylate protein family. This entry is specific for the bacterial Coq7 proteins.; GO: 0006744 ubiquinone biosynthetic process, 0055114 oxidation-reduction process
Probab=32.31 E-value=2.7e+02 Score=24.10 Aligned_cols=57 Identities=19% Similarity=0.261 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHH
Q 024844 180 LYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLR 239 (261)
Q Consensus 180 lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~ 239 (261)
-.+|+..-.-|--...-|..-..++.. |+.+..+|. ++.+++.+|..++.+.+..++
T Consensus 4 ~r~lRVdHAGE~~A~~iY~gQ~~~~~~--~~~~~~~l~-~~~~~E~~Hl~~f~~~l~~~~ 60 (172)
T PF03232_consen 4 ARILRVDHAGEVGAVRIYRGQLAVARR--DPELRPFLK-EMAEEEKDHLAWFEQLLPELR 60 (172)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHCC--CHHHHHHHH-HHHHHHHHHHHHHHHHhHHcC
Confidence 356666777777766666655555433 999999999 999999999999999999874
No 91
>smart00055 FCH Fes/CIP4 homology domain. Alignment extended from original report. Highly alpha-helical. Also known as the RAEYL motif or the S. pombe Cdc15 N-terminal domain.
Probab=32.29 E-value=2e+02 Score=20.93 Aligned_cols=28 Identities=32% Similarity=0.457 Sum_probs=24.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024844 127 LRGLAKFFKESSEEEREHAEKFMEYQNL 154 (261)
Q Consensus 127 L~GfAkfF~~~S~EEreHAekLi~Y~n~ 154 (261)
+.-+..||++.|.=|.++|.+|-+-..+
T Consensus 25 ~~~~~~f~~~Ra~iE~eYak~L~kL~~~ 52 (87)
T smart00055 25 LEDLKKFIRERAKIEEEYAKKLQKLSKK 52 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4569999999999999999999988765
No 92
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=32.22 E-value=3.6e+02 Score=23.83 Aligned_cols=34 Identities=29% Similarity=0.223 Sum_probs=28.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCee
Q 024844 126 ALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKV 159 (261)
Q Consensus 126 ~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v 159 (261)
-+..|..||++.|.-|.++|.+|-+....-.+..
T Consensus 20 ~~~~l~~f~keRa~iE~eYak~L~kLa~k~~~~~ 53 (251)
T cd07653 20 FLERYGKFVKERAAIEQEYAKKLRKLVKKYLPKK 53 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4668999999999999999999998877654433
No 93
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=30.51 E-value=81 Score=23.56 Aligned_cols=51 Identities=14% Similarity=0.076 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHHhcc
Q 024844 190 EKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVG 242 (261)
Q Consensus 190 Ek~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~r~g 242 (261)
++.....+..|+..+.+.+ +.|.+=|. .+|.+..-....+..++..|...|
T Consensus 2 ~~~~~~~i~~Li~~gK~~G-~lT~~eI~-~~L~~~~~~~e~id~i~~~L~~~g 52 (82)
T PF03979_consen 2 IEQYEEAIKKLIEKGKKKG-YLTYDEIN-DALPEDDLDPEQIDEIYDTLEDEG 52 (82)
T ss_dssp --HHHHHHHHHHHHHHHHS-S-BHHHHH-HH-S-S---HHHHHHHHHHHHTT-
T ss_pred cchhHHHHHHHHHHHhhcC-cCCHHHHH-HHcCccCCCHHHHHHHHHHHHHCC
Confidence 4556778889999998877 47888888 788887788889999999998876
No 94
>PF07875 Coat_F: Coat F domain; InterPro: IPR012851 The Coat F proteins contribute to the Bacillales spore coat. They occur multiple times in the genomes in which they are found. Bacillus subtilis endospore protein coats protect them and may play a role in their germination []. Spore coat protein F, on the outer surface of the endospore, is one of a suite of proteins that could be used to differentiate between members of the Bacillus genus [].
Probab=29.86 E-value=2e+02 Score=20.20 Aligned_cols=53 Identities=15% Similarity=0.204 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHH
Q 024844 180 LYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVS 236 (261)
Q Consensus 180 lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~ 236 (261)
.+++...|..+|.....+... +.+..+|.++++|. ..+.+.++.-.++-++..
T Consensus 3 ~~i~~d~L~~~K~~~~~y~~a---~~E~~np~lR~~l~-~~~~~~~~~~~~l~~~m~ 55 (64)
T PF07875_consen 3 KDIANDLLNSEKAAARNYATA---ALECANPELRQILQ-QILNECQQMQYELFNYMN 55 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHCCHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 356777888898877776654 45679999999999 788887777777766554
No 95
>PF00611 FCH: Fes/CIP4, and EFC/F-BAR homology domain; InterPro: IPR001060 The FCH domain is a short conserved region of around 60 amino acids first described as a region of homology between FER and CIP4 proteins []. Many proteins containing an FCH domain are involved in the regulation of cytoskeletal rearrangements, vesicular transport and endocytosis. In the CIP4 protein the FCH domain binds to microtubules []. The FCH domain is always found N-terminally and is followed by a coiled-coil region. Proteins containing an FCH domain can be divided in 3 classes []: A subfamily of protein kinases usually associated with an SH2 domain: Fps/fes (Fujimani poultry sarcoma/feline sarcoma) proto-oncogenes. They are non-receptor protein-tyrosine kinases preferentially expressed in myeloid lineage. The viral oncogene has an unregulated kinase activity which abrogates the need for cytokines and influences differentiation of haematopoietic progenitor cells. Fes related protein (fer). It is an ubiquitously expressed homologue of Fes. Adaptor proteins usually associated with a C-terminal SH3 domain: Schizosaccharomyces pombe CDC15 protein. It mediates cytoskeletal rearrangements required for cytokinesis. It is essential for viability. CD2 cytoplasmic domain binding protein. Mammalian Cdc42-interacting protein 4 (CIP4). It may act as a link between Cdc42 signaling and regulation of the actin cytoskeleton. Mammalian PACSIN proteins. A family of cytoplasmic phosphoproteins playing a role in vesicle formation and transport. A subfamily of Rho-GAP proteins: Mammalian RhoGAP4 proteins. They may down-regulate Rho-like GTPases in hematopoietic cells. Yeast hypothetical protein YBR260C. Caenorhabditis elegans hypothetical protein ZK669.1. ; PDB: 2EFK_A 2EFL_A 2X3W_A 2X3X_C 2X3V_C 3I2W_A 3ABH_B 3Q0K_B 3HAJ_A 3ACO_B ....
Probab=29.23 E-value=1.1e+02 Score=22.18 Aligned_cols=31 Identities=32% Similarity=0.361 Sum_probs=25.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 024844 126 ALRGLAKFFKESSEEEREHAEKFMEYQNLRG 156 (261)
Q Consensus 126 ~L~GfAkfF~~~S~EEreHAekLi~Y~n~RG 156 (261)
-+..+..||++.+.-|.++|..|-+.-.+-.
T Consensus 24 ~~~~l~~~~keRa~lE~~Yak~L~kl~~~~~ 54 (91)
T PF00611_consen 24 LLEELASFFKERASLEEEYAKSLQKLAKKFK 54 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3567999999999999999999987766544
No 96
>KOG4061 consensus DMQ mono-oxygenase/Ubiquinone biosynthesis protein COQ7/CLK-1/CAT5 [General function prediction only]
Probab=27.75 E-value=4.4e+02 Score=23.51 Aligned_cols=117 Identities=15% Similarity=0.209 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCC---CCCccccC---
Q 024844 104 NVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPS---EFDHAEKG--- 177 (261)
Q Consensus 104 n~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~P~~---~f~~~e~~--- 177 (261)
.-||.|-++|----+....-. ++.-.++.=++|.+|-..|-+++.++--+|.+- .|.- .|. ..-|
T Consensus 58 AGElGAdrIYaGQ~avL~~~~-----vgpvi~hmWdqEk~Hl~tf~~l~~k~rVrpT~l---~P~w~vagfa-lGaGTAL 128 (217)
T KOG4061|consen 58 AGELGADRIYAGQMAVLQGTS-----VGPVIKHMWDQEKEHLKTFENLALKHRVRPTVL---TPLWNVAGFA-LGAGTAL 128 (217)
T ss_pred ccccccchhhhchhhhhcCCC-----chhHHHHHHHHHHHHHHHHHHHHHHccCCchhh---hhHHHHHHHH-hccchhh
Confidence 348999999986666665332 667778888899999999999999999887643 2321 110 0001
Q ss_pred -CHHHHHHHHHHHHHHHHHHHHHHH-HHHhh--CCChhHHHHhHHhhHHHHHHHHHH
Q 024844 178 -DALYAMELALSLEKLTNEKLLSLH-SVADR--NNDPQMAEFVESEFLGEQVEAINK 230 (261)
Q Consensus 178 -d~lea~e~AL~lEk~vt~~l~~L~-~lA~~--~~D~~t~~FLe~~FL~EQve~ik~ 230 (261)
....||.+..+.|-.+-..|++=. +++.. +.+-.+...|. .|=+|+.||.+.
T Consensus 129 lg~eaAMACT~AVEtvIg~HYNdQlr~l~~~~pe~~kell~~i~-~fRDeEleHhdt 184 (217)
T KOG4061|consen 129 LGKEAAMACTEAVETVIGGHYNDQLRELAEDDPEEHKELLSTIT-KFRDEELEHHDT 184 (217)
T ss_pred hChHHHHHHHHHHHHHHHHhhhHHHHHHHHhCcHhHHHHHHHHH-HHhHHHHHhhcc
Confidence 235678888888877777766533 34332 45556666777 777777776654
No 97
>COG3685 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.66 E-value=4.1e+02 Score=23.12 Aligned_cols=55 Identities=18% Similarity=0.252 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHH
Q 024844 180 LYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQL 238 (261)
Q Consensus 180 lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L 238 (261)
.+-++.+...||...+.|-.+.+-|. ++.+..-++ .-|+|--.+|+.|...++.+
T Consensus 11 ~~~LrD~y~aEkq~~kaL~kma~~~~---~~~Lka~~E-~Hl~ET~~qi~rLe~Vfe~~ 65 (167)
T COG3685 11 IDTLRDIYAAEKQILKALPKMARRAQ---YPELKAAIE-KHLEETKGQIERLEQVFERL 65 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc---CHHHHHHHH-HHHHHHHHHHHHHHHHHHHh
No 98
>KOG3518 consensus Putative guanine nucleotide exchange factor [General function prediction only]
Probab=25.73 E-value=1.1e+02 Score=29.82 Aligned_cols=126 Identities=19% Similarity=0.209 Sum_probs=61.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCe-----eeecccCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHH
Q 024844 126 ALRGLAKFFKESSEEEREHAEKFMEYQNLRGGK-----VKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSL 200 (261)
Q Consensus 126 ~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~-----v~l~~I~~P~~~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L 200 (261)
.-|-+|++|++. ++-..|...|--|+++-=.+ .-+..|.+....-.++| .+.....|.+.-..+...|++.
T Consensus 229 q~~ilaka~qer-q~al~hsl~l~ayllkpvqrilkyhlfle~i~k~l~~~thpe---el~qvk~ahd~m~~qa~~inde 304 (521)
T KOG3518|consen 229 QNKILAKAFQER-QEALKHSLPLGAYLLKPVQRILKYHLFLEEIEKHLDKDTHPE---ELDQVKDAHDTMQRQAAHINDE 304 (521)
T ss_pred HhHHHHHHHHHH-HHHHhcccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCCChH---HHHHHHHHHHHHHHHHHHhcch
Confidence 345677777764 45566666555555542211 12334433221111221 2344444444444444445444
Q ss_pred HHHHhhC-CChhHHHHhHHhhHHH-HHHHHHHHHHHHH--HHHhcc--CCchhhHHhHHhh
Q 024844 201 HSVADRN-NDPQMAEFVESEFLGE-QVEAINKIAKYVS--QLRMVG--KGHGLWHFDQMLL 255 (261)
Q Consensus 201 ~~lA~~~-~D~~t~~FLe~~FL~E-Qve~ik~l~~~l~--~L~r~g--~g~g~ylfD~~L~ 255 (261)
-+.|+.. .=-+++..|+.|--+| |+-.+.-.++++- .+|..| +..-+|+||+.|+
T Consensus 305 kkkaeh~erlgeiqs~lqkwkadeiqi~dlsaygdllleatfr~agak~~rllflfdelll 365 (521)
T KOG3518|consen 305 KKKAEHAERLGEIQSLLQKWKADEIQIPDLSAYGDLLLEATFRIAGAKNERLLFLFDELLL 365 (521)
T ss_pred hHHHHHHHHHHHHHHHHHhcccccccCCchhhhHHHHHHHHHHHhcccccchHHHHHhHHh
Confidence 4433321 1123455666555444 5555555555542 344555 3457899999875
No 99
>COG1152 CdhA CO dehydrogenase/acetyl-CoA synthase alpha subunit [Energy production and conversion]
Probab=25.51 E-value=3.6e+02 Score=28.35 Aligned_cols=92 Identities=18% Similarity=0.179 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHcCCe---eeec---ccCCCCC----CCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhhCCC
Q 024844 141 EREHAEKFMEYQNLRGGK---VKLH---SIMQPPS----EFDHAEKGDALYAMELALSLEKLTNEKLLSLHSV-ADRNND 209 (261)
Q Consensus 141 EreHAekLi~Y~n~RGG~---v~l~---~I~~P~~----~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~l-A~~~~D 209 (261)
.-.||..|.+++...=|. +.+. ++..|.. .+..-.-+|...+|+. -|+++++.+..+|.= -....|
T Consensus 110 ha~haRHLv~hlie~~Ged~pidlG~e~~v~aPi~~t~~G~kPktlgdle~~l~y---~Eeqlt~~ls~~h~gqE~~~~d 186 (772)
T COG1152 110 HAAHARHLVDHLIETFGEDLPIDLGSEVNVEAPIIETVTGIKPKTLGDLEAALEY---AEEQLTQLLSAVHTGQEGSLLD 186 (772)
T ss_pred hhhhHHHHHHHHHHHhCccCccCCCcccccccchhhhhhCCCccchHHHHHHHHH---HHHHHHHHHHHHhccCcccccc
Confidence 346899999999887665 3343 2334442 2211111344444443 488889998888862 224579
Q ss_pred hhHHHHhHHhhHHHHHHHHHHHHHHHH
Q 024844 210 PQMAEFVESEFLGEQVEAINKIAKYVS 236 (261)
Q Consensus 210 ~~t~~FLe~~FL~EQve~ik~l~~~l~ 236 (261)
|.+..+.- -.++.--.++..+..++.
T Consensus 187 yeSkAlha-G~~d~l~~EiaDiaqi~a 212 (772)
T COG1152 187 YESKALHA-GMIDHLGMEIADIAQIVA 212 (772)
T ss_pred hhHHHhhh-hhhhHHHHHHHHHHHHHh
Confidence 99888777 788887777777766554
No 100
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=25.29 E-value=1.3e+02 Score=29.06 Aligned_cols=59 Identities=20% Similarity=0.302 Sum_probs=35.4
Q ss_pred HHHHHHHHHhHHHHH--HHHHHHHHHhhcccC-------CccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024844 94 ECEAAINEQINVEYN--VSYVYHALYAYFDRD-------NIALRGLAKFFKESSEEEREHAEKFMEYQNL 154 (261)
Q Consensus 94 ~~e~aLNeQIn~El~--ASy~YlsmAa~Fdrd-------~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~ 154 (261)
+=.+.+|.+|...+. +|..|-.--.||... .+||-|+|.+.-..-++. |+..+.+-+..
T Consensus 127 ~klA~fhA~v~~~L~~p~S~yye~a~~Ylsg~~~~~~WQ~lGLQGIAD~~aRl~~~~--~~~~l~~al~~ 194 (340)
T PF12069_consen 127 EKLAMFHAQVRAQLGQPASQYYEHAQAYLSGQLGWDNWQTLGLQGIADICARLDQED--NAQLLRKALPH 194 (340)
T ss_pred HHHHHHHHHHHHHcCCCcchhHHHHHHHHcCCcchhHHHHhhhhHHHHHHHHhcccc--hHHHHHHHHhh
Confidence 345677777777654 344444444444433 479999999887754443 46666655554
No 101
>PRK09448 DNA starvation/stationary phase protection protein Dps; Provisional
Probab=24.89 E-value=3.5e+02 Score=22.82 Aligned_cols=59 Identities=12% Similarity=0.022 Sum_probs=43.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHH
Q 024844 178 DALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQ 237 (261)
Q Consensus 178 d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~ 237 (261)
.+.+++...|+.+....-++++.|=.....+=+.+..+++ ++.++..++++.++.-+..
T Consensus 22 ~~~~~Ln~~LA~~~~l~~k~~~~hW~v~G~~f~~lH~~le-e~~~~~~~~~D~iAERi~~ 80 (162)
T PRK09448 22 ATIELLNQQLAQFIDLSLITKQAHWNMKGANFIAVHEMLD-GFRTALEDHLDTMAERAVQ 80 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhccCCCHHHHHHHHH-HHHHHHHHHhHHHHHHHHH
Confidence 4678889999999999999998888777777777777777 6666666666666544443
No 102
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=24.61 E-value=5.3e+02 Score=23.32 Aligned_cols=34 Identities=24% Similarity=0.280 Sum_probs=28.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCee
Q 024844 126 ALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKV 159 (261)
Q Consensus 126 ~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v 159 (261)
-+..+..||++.|.-|.++|.+|-+...+-.+.+
T Consensus 20 ~~~el~~f~kERa~IE~~Yak~L~kLakk~~~~~ 53 (258)
T cd07655 20 LCDDLMKMVQERAEIEKAYAKKLKEWAKKWRDLI 53 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3567999999999999999999998887755444
No 103
>TIGR00754 bfr bacterioferritin. Bacterioferritin is a homomultimer most species. In Neisseria gonorrhoeae, Synechocystis PCC6803, Magnetospirillum magnetotacticum, and Pseudomonas aeruginosa, two types of subunit are found in a heteromultimeric complex, with each species having one member of each type. At present, both types of subunit are including in this single model.
Probab=23.82 E-value=4.1e+02 Score=21.77 Aligned_cols=59 Identities=15% Similarity=0.211 Sum_probs=51.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024844 93 DECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQN 153 (261)
Q Consensus 93 ~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n 153 (261)
..+.+.|-..+..|-.++-.|.-+...+. ..+=++...||..-..+|-+|+..|-.++.
T Consensus 81 ~~~~e~l~~~l~~E~~~~~~~~e~i~~A~--~~~D~~t~~ll~~~i~eee~h~~~l~~~l~ 139 (157)
T TIGR00754 81 ETVREMLEADLALELDVLNRLKEAIAYAE--EVRDYVSRDLLEEILEDEEEHIDWLETQLE 139 (157)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678899999999999999999998887 346789999999999999999998877765
No 104
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=23.42 E-value=4.8e+02 Score=22.59 Aligned_cols=72 Identities=11% Similarity=0.166 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHcCCeeeecccCCCCC-CC-----CccccCCHHHHHHHHHHHHHHHHHHHHHHHH-HHhhCCChhHHHHh
Q 024844 144 HAEKFMEYQNLRGGKVKLHSIMQPPS-EF-----DHAEKGDALYAMELALSLEKLTNEKLLSLHS-VADRNNDPQMAEFV 216 (261)
Q Consensus 144 HAekLi~Y~n~RGG~v~l~~I~~P~~-~f-----~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~-lA~~~~D~~t~~FL 216 (261)
.-.++|+.+..-| +.+..|..+.. +. ......+..+-++..-.+...+.+.+.+|-. ++....|..+++.|
T Consensus 44 ~~L~~I~~l~~~G--m~i~~i~~~~~~~l~~~~l~~~G~~t~~~R~~lLe~~~~~l~~ri~eLe~~l~~kad~vvsYqll 121 (175)
T PRK13182 44 QLLEYVKSQIEEG--QNMQDTQKPSSNDVEETQVNTIVQNISSVDFEQLEAQLNTITRRLDELERQLQQKADDVVSYQLL 121 (175)
T ss_pred HHHHHHHHHHHcC--CCHHHHHHHhhhhhhHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 3456666666666 44445533210 00 0011134557778888888889999999977 56678899999888
Q ss_pred H
Q 024844 217 E 217 (261)
Q Consensus 217 e 217 (261)
+
T Consensus 122 ~ 122 (175)
T PRK13182 122 Q 122 (175)
T ss_pred H
Confidence 8
No 105
>PF02332 Phenol_Hydrox: Methane/Phenol/Toluene Hydroxylase; InterPro: IPR003430 Bacterial phenol hydroxylase (1.14.13.7 from EC) is a multicomponent enzyme that catabolises phenol and some of its methylated derivatives. This family contains both the P1 and P3 polypeptides of phenol hydroxlase and the alpha and beta chain of methane hydroxylase protein A. Methane hydroxylase protein A (1.14.13.25 from EC) is responsible for the initial oxygenation of methane to methanol in methanotrophs. It also catalyses the monohydroxylation of a variety of unactivated alkenes, alicyclic, aromatic and heterocyclic compounds. Also included in this family is toluene-4-monooxygenase system protein A (1.14.13 from EC), which hydroxylates toluene to form P-cresol.; GO: 0006725 cellular aromatic compound metabolic process, 0055114 oxidation-reduction process; PDB: 3N20_B 3RNA_B 3N1X_B 3RNC_B 3RNG_B 3RNF_B 3N1Z_B 3RN9_B 3N1Y_B 3RNB_B ....
Probab=21.92 E-value=5.7e+02 Score=22.74 Aligned_cols=136 Identities=11% Similarity=0.064 Sum_probs=78.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCCCCCc-c
Q 024844 96 EAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEFDH-A 174 (261)
Q Consensus 96 e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~P~~~f~~-~ 174 (261)
...+.---..|+.+...-..++.+.-. -.+... +.-++-+|..|++.+.-++...-+...=..... ...|.+ +
T Consensus 76 ~~~~~~~~~~E~ga~~~~a~~~r~~~~--~~i~n~---~~f~a~DelR~~q~~~~~~~~~~~~~~~~~~~~-k~~w~~~p 149 (233)
T PF02332_consen 76 KRHLGPLRHAEYGAQMASAYIARFAPG--TAIRNA---ATFQAMDELRHAQRQALLLKELAGAYPDFAGAA-KEAWLNDP 149 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-SS--HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHCHCCCSCCCT-HHHHHHSH
T ss_pred HHHcCCcchHHHHHHHHHHHHHhhcCc--HHHHHH---HHHHHhHHHHHHHHHHHHHhhhhhhCcccChHH-HHHHhhCc
Confidence 334444445677776666666666653 234433 334888999999999977776643221111000 000100 1
Q ss_pred ccCCHHH--------------HHHHHHHHHHHHHHH-HHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHH
Q 024844 175 EKGDALY--------------AMELALSLEKLTNEK-LLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQL 238 (261)
Q Consensus 175 e~~d~le--------------a~e~AL~lEk~vt~~-l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L 238 (261)
.|..+.. .+...|..|-.++.. +.++...|..++|..+..++. .+-.+..++.++....+..+
T Consensus 150 ~wq~~R~~vE~~~~~~Dw~E~~va~nlv~e~l~~~l~~~~~~~~A~~nGD~~~~~l~~-~~q~d~~r~~~~~~al~~~~ 227 (233)
T PF02332_consen 150 AWQPLRRLVEDLLVTYDWFEAFVALNLVFEPLFTNLLFVEFDRLAAANGDFLTPTLTS-SIQSDEARHMRWGDALFKMA 227 (233)
T ss_dssp HHHHHHHHHHHHTTSSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 1111222 233445566666655 556778999999999998888 67777777877777665543
No 106
>PF10097 DUF2335: Predicted membrane protein (DUF2335); InterPro: IPR019284 This entry is represented by Xylella phage Xfas53, Orf42. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=21.22 E-value=2e+02 Score=19.86 Aligned_cols=29 Identities=24% Similarity=0.229 Sum_probs=25.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024844 126 ALRGLAKFFKESSEEEREHAEKFMEYQNL 154 (261)
Q Consensus 126 ~L~GfAkfF~~~S~EEreHAekLi~Y~n~ 154 (261)
-+||.+......++.|.+|-.++-+-.++
T Consensus 12 i~Pg~aerI~~mae~eq~hR~~~e~~~l~ 40 (50)
T PF10097_consen 12 ILPGAAERIFAMAEKEQEHRHELEKKALK 40 (50)
T ss_pred HCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999988665543
No 107
>cd00904 Ferritin Ferritin iron storage proteins. Ferritins are the primary iron storage proteins of most living organisms and members of a broad superfamily of ferritin-like diiron-carboxylate proteins. The iron-free (apoferritin) ferritin molecule is a protein shell composed of 24 protein chains arranged in 432 symmetry. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the dinuclear ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite; the protein shell can hold up to 4500 iron atoms. In vertebrates, two types of chains (subunits) have been characterized, H or M (fast) and L (slow), which differ in rates of iron uptake and mineralization. Bacterial non-heme ferritins are composed only of H chains. Fe(II) oxidation in the H/M subunits take place initially at the ferroxidase center, a carboxylate-bridged diiron center, located within the subunit four-helix bundle. In a complementary rol
Probab=20.80 E-value=4.9e+02 Score=21.57 Aligned_cols=59 Identities=27% Similarity=0.276 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhC--CChhHHHHhHHhhHHHHHHHHHHHHHHHHHH
Q 024844 179 ALYAMELALSLEKLTNEKLLSLHSVADRN--NDPQMAEFVESEFLGEQVEAINKIAKYVSQL 238 (261)
Q Consensus 179 ~lea~e~AL~lEk~vt~~l~~L~~lA~~~--~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L 238 (261)
...++...+.+|-.....|..+...+... +=+.++.|+. .--.|..+|..+|-+++...
T Consensus 4 ~~~~Ln~qi~~El~as~~Yl~ma~~~~~~~~~l~g~a~~f~-~~s~eE~~HA~~l~~yi~~r 64 (160)
T cd00904 4 VEAAVNRQLNLELYASYTYLSMATYFDRDDVALKGVAHFFK-EQAQEEREHAEKFYKYQNER 64 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccccccchhHHHHHH-HHHHHHHHHHHHHHHHHHHC
Confidence 57889999999999999999999998665 6677777777 34444455666665665544
No 108
>cd06891 PX_Vps17p The phosphoinositide binding Phox Homology domain of yeast sorting nexin Vps17p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. Similar to Vps5p and SNX1, Vps17p harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvatur
Probab=20.60 E-value=3.9e+02 Score=22.40 Aligned_cols=66 Identities=20% Similarity=0.253 Sum_probs=37.5
Q ss_pred HHHHHHHHHcCCeeeecccCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHH
Q 024844 146 EKFMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVES 218 (261)
Q Consensus 146 ekLi~Y~n~RGG~v~l~~I~~P~~~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~ 218 (261)
.+|.+|+...-.-+.+++++.+...|+. ++....-+....+|+-++ .+...-.=..|..+..|||+
T Consensus 74 ~~L~~~L~~~~~~~iVPplP~k~~~~~~---~~~E~~~~rr~~LqrfL~----RV~~hP~L~~d~~l~~FLEs 139 (140)
T cd06891 74 QKLFKYLNGANPETFVPALPLPSTSYGS---NNEEDARKLKANLQRWFN----RVCSDPILIRDEELRFFIES 139 (140)
T ss_pred HHHHHHHHHHCCCcEeCCCCCccccCCC---CCHHHHHHHHHHHHHHHH----HHhCChhhccCHHHHHHhcc
Confidence 3455666666666777888877765532 344444444444443322 22222223689999988874
Done!