BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 024845
         (261 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q21UD1|SECA_RHOFD Protein translocase subunit SecA OS=Rhodoferax ferrireducens
           (strain DSM 15236 / ATCC BAA-621 / T118) GN=secA PE=3
           SV=1
          Length = 921

 Score = 32.3 bits (72), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 8/68 (11%)

Query: 149 SRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRT---KLRQA-GKQIQGVINSA 204
           SR D ++KQ R+S+ R+ A   +LEK++    DE +RG+T   K R A G+ +  ++  A
Sbjct: 12  SRNDRQLKQYRKSVVRINAMEAELEKLS----DEALRGKTQEFKDRIAKGESLDALLPEA 67

Query: 205 YKIERQAA 212
           + + R+ +
Sbjct: 68  FAVVREGS 75


>sp|Q2M2T9|CO043_BOVIN Uncharacterized protein C15orf43 homolog OS=Bos taurus PE=2 SV=1
          Length = 221

 Score = 31.2 bits (69), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 7/63 (11%)

Query: 77  QTLDYLQDVKSEYAAYEDAAVGKVKEGIHVAASHPFITAGGAI------GLGSFLLKRPR 130
           Q+LDY++D  + + AY  +AV   +    VA  H FI    ++       +GSF+ ++ +
Sbjct: 52  QSLDYIEDNATVFHAYYLSAVANAEIKNSVALGH-FILPPASLQKEIRRKIGSFIWEQDQ 110

Query: 131 HFL 133
           HFL
Sbjct: 111 HFL 113


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.313    0.127    0.334 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,690,838
Number of Sequences: 539616
Number of extensions: 2889386
Number of successful extensions: 10930
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 164
Number of HSP's that attempted gapping in prelim test: 10642
Number of HSP's gapped (non-prelim): 457
length of query: 261
length of database: 191,569,459
effective HSP length: 115
effective length of query: 146
effective length of database: 129,513,619
effective search space: 18908988374
effective search space used: 18908988374
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.7 bits)