Query 024845
Match_columns 261
No_of_seqs 34 out of 36
Neff 3.3
Searched_HMMs 46136
Date Fri Mar 29 07:50:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024845.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024845hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05957 DUF883: Bacterial pro 97.6 0.0014 3E-08 50.8 11.1 82 41-125 6-87 (94)
2 PRK10404 hypothetical protein; 96.5 0.054 1.2E-06 43.8 10.8 77 42-125 14-94 (101)
3 PF04156 IncA: IncA protein; 95.9 0.92 2E-05 38.4 16.9 125 111-243 38-170 (191)
4 PRK10132 hypothetical protein; 95.0 0.46 1E-05 39.0 10.9 60 58-125 37-100 (108)
5 COG4575 ElaB Uncharacterized c 94.9 0.26 5.6E-06 40.8 8.9 83 36-125 11-97 (104)
6 COG1579 Zn-ribbon protein, pos 94.5 1.4 3E-05 40.9 13.7 122 134-259 29-159 (239)
7 PRK11637 AmiB activator; Provi 93.8 4.1 9E-05 39.1 16.1 93 150-257 44-136 (428)
8 PF06008 Laminin_I: Laminin Do 93.4 3.6 7.8E-05 37.1 14.0 118 124-241 14-140 (264)
9 PRK15178 Vi polysaccharide exp 88.3 10 0.00022 37.9 12.8 104 145-248 222-338 (434)
10 PRK14161 heat shock protein Gr 87.5 14 0.00031 32.6 11.9 77 142-223 8-84 (178)
11 PRK14160 heat shock protein Gr 87.1 17 0.00037 33.2 12.5 106 143-260 51-158 (211)
12 PF11559 ADIP: Afadin- and alp 86.1 18 0.00039 29.9 13.2 58 147-204 53-110 (151)
13 PRK10132 hypothetical protein; 85.5 9.1 0.0002 31.5 9.0 65 57-128 43-107 (108)
14 PRK11637 AmiB activator; Provi 84.9 39 0.00084 32.6 14.6 62 146-207 75-136 (428)
15 KOG1962 B-cell receptor-associ 84.8 21 0.00047 32.9 12.0 93 137-235 119-211 (216)
16 COG4942 Membrane-bound metallo 84.3 42 0.00091 33.8 14.6 78 140-225 33-110 (420)
17 PRK09039 hypothetical protein; 83.6 42 0.00092 32.1 19.9 153 43-214 41-199 (343)
18 PRK14140 heat shock protein Gr 83.0 22 0.00047 32.0 11.1 95 157-260 41-137 (191)
19 PF10186 Atg14: UV radiation r 82.9 33 0.00071 30.2 14.1 31 227-257 129-159 (302)
20 PRK06569 F0F1 ATP synthase sub 80.3 26 0.00057 30.6 10.3 18 126-143 24-41 (155)
21 PRK14148 heat shock protein Gr 78.5 47 0.001 29.9 11.7 99 160-260 40-140 (195)
22 PF09769 ApoO: Apolipoprotein 77.3 6.2 0.00014 33.2 5.5 72 64-139 47-127 (158)
23 PF04156 IncA: IncA protein; 76.7 46 0.00099 28.2 15.0 70 139-208 81-150 (191)
24 PRK04654 sec-independent trans 75.6 30 0.00064 32.1 9.7 81 122-203 15-97 (214)
25 PRK14139 heat shock protein Gr 75.2 55 0.0012 29.3 11.1 102 150-260 29-130 (185)
26 PRK08476 F0F1 ATP synthase sub 74.9 48 0.001 27.6 14.4 56 120-175 15-70 (141)
27 PF00261 Tropomyosin: Tropomyo 73.5 69 0.0015 28.7 14.3 66 145-210 105-170 (237)
28 KOG2629 Peroxisomal membrane a 73.0 78 0.0017 30.7 12.1 75 121-195 96-171 (300)
29 PRK08475 F0F1 ATP synthase sub 72.5 61 0.0013 27.7 13.9 77 96-172 3-82 (167)
30 TIGR01843 type_I_hlyD type I s 72.5 80 0.0017 29.1 14.5 11 190-200 212-222 (423)
31 TIGR01843 type_I_hlyD type I s 71.8 83 0.0018 29.0 13.7 32 154-185 152-183 (423)
32 PRK14154 heat shock protein Gr 71.7 57 0.0012 29.8 10.5 96 157-260 56-153 (208)
33 PRK14162 heat shock protein Gr 71.2 79 0.0017 28.5 11.7 98 154-260 40-139 (194)
34 PRK14163 heat shock protein Gr 71.1 69 0.0015 29.4 10.9 92 155-260 42-133 (214)
35 PRK14145 heat shock protein Gr 69.2 89 0.0019 28.3 11.2 94 162-260 47-142 (196)
36 PF04632 FUSC: Fusaric acid re 68.5 71 0.0015 31.7 11.3 107 113-223 137-244 (650)
37 PF10805 DUF2730: Protein of u 68.0 62 0.0013 26.0 9.3 18 110-127 9-26 (106)
38 PRK14153 heat shock protein Gr 67.7 95 0.0021 28.0 11.6 100 152-260 32-133 (194)
39 CHL00118 atpG ATP synthase CF0 67.1 76 0.0016 26.7 15.7 60 114-173 24-83 (156)
40 PF06103 DUF948: Bacterial pro 66.6 55 0.0012 24.9 11.1 62 145-206 25-86 (90)
41 PRK04863 mukB cell division pr 65.9 2.6E+02 0.0056 32.4 19.5 156 61-219 194-379 (1486)
42 PRK14143 heat shock protein Gr 65.1 1.2E+02 0.0026 28.2 11.5 66 154-224 68-133 (238)
43 PRK14471 F0F1 ATP synthase sub 64.8 84 0.0018 26.3 15.7 54 119-172 15-68 (164)
44 TIGR03185 DNA_S_dndD DNA sulfu 64.5 1.7E+02 0.0038 29.9 16.2 96 91-191 146-247 (650)
45 PF00038 Filament: Intermediat 63.6 1.2E+02 0.0025 27.6 10.9 108 147-254 62-174 (312)
46 TIGR02168 SMC_prok_B chromosom 62.6 2E+02 0.0044 30.0 15.9 17 74-90 180-196 (1179)
47 PF07926 TPR_MLP1_2: TPR/MLP1/ 62.5 87 0.0019 25.8 15.3 98 148-253 12-109 (132)
48 PRK14158 heat shock protein Gr 62.2 1.2E+02 0.0026 27.3 11.4 97 154-260 41-139 (194)
49 PRK14146 heat shock protein Gr 61.8 1E+02 0.0023 28.1 10.2 93 166-260 60-154 (215)
50 PRK14151 heat shock protein Gr 61.8 1.1E+02 0.0025 26.9 10.2 98 155-260 22-121 (176)
51 PRK14156 heat shock protein Gr 61.4 97 0.0021 27.6 9.7 88 168-260 35-124 (177)
52 PRK14474 F0F1 ATP synthase sub 60.3 1.4E+02 0.003 27.4 15.7 37 114-150 7-43 (250)
53 KOG0250 DNA repair protein RAD 60.1 2.3E+02 0.005 32.0 13.9 60 163-222 368-428 (1074)
54 TIGR03185 DNA_S_dndD DNA sulfu 59.7 2.1E+02 0.0046 29.3 13.8 31 226-256 485-516 (650)
55 PRK14147 heat shock protein Gr 59.5 1.2E+02 0.0027 26.6 10.4 93 157-260 22-116 (172)
56 PF10146 zf-C4H2: Zinc finger- 59.5 1.5E+02 0.0032 27.4 11.3 51 132-182 11-61 (230)
57 PRK09039 hypothetical protein; 59.4 1.7E+02 0.0037 28.1 13.8 43 132-177 42-84 (343)
58 COG3883 Uncharacterized protei 58.9 1.7E+02 0.0036 27.9 11.5 77 128-204 19-96 (265)
59 PF12777 MT: Microtubule-bindi 58.2 84 0.0018 29.7 9.3 78 110-187 185-262 (344)
60 PRK00888 ftsB cell division pr 57.8 55 0.0012 26.5 7.0 28 147-174 35-62 (105)
61 PRK14155 heat shock protein Gr 56.5 1.3E+02 0.0027 27.5 9.7 100 154-260 14-116 (208)
62 PRK14150 heat shock protein Gr 56.4 1.5E+02 0.0032 26.5 10.7 80 180-260 58-139 (193)
63 KOG0964 Structural maintenance 56.3 2.1E+02 0.0046 32.4 12.8 138 122-259 364-509 (1200)
64 PF05700 BCAS2: Breast carcino 56.2 1.5E+02 0.0033 26.5 11.1 65 144-218 141-205 (221)
65 PF07888 CALCOCO1: Calcium bin 56.0 2.6E+02 0.0057 29.2 13.5 61 188-248 283-356 (546)
66 smart00787 Spc7 Spc7 kinetocho 55.8 1.9E+02 0.0042 27.6 12.8 104 138-242 153-264 (312)
67 KOG0977 Nuclear envelope prote 55.8 2.6E+02 0.0057 29.2 13.3 51 147-197 100-150 (546)
68 PF06818 Fez1: Fez1; InterPro 55.6 1.7E+02 0.0036 26.9 12.0 93 157-249 42-156 (202)
69 PRK14473 F0F1 ATP synthase sub 55.2 1.3E+02 0.0027 25.3 17.1 54 120-173 16-69 (164)
70 PF12777 MT: Microtubule-bindi 54.9 46 0.00099 31.5 7.0 84 140-223 229-312 (344)
71 PF10168 Nup88: Nuclear pore c 53.9 3E+02 0.0066 29.3 17.3 156 93-254 502-662 (717)
72 PF12072 DUF3552: Domain of un 53.8 1.6E+02 0.0034 26.0 18.2 76 113-195 8-85 (201)
73 PRK06568 F0F1 ATP synthase sub 53.3 1.5E+02 0.0033 25.7 15.8 47 129-175 21-67 (154)
74 PF12758 DUF3813: Protein of u 52.9 25 0.00055 27.0 4.0 47 37-84 11-61 (63)
75 PF05667 DUF812: Protein of un 52.6 3E+02 0.0064 28.8 15.0 105 145-251 400-511 (594)
76 PRK13454 F0F1 ATP synthase sub 52.6 1.6E+02 0.0034 25.6 14.0 51 122-172 41-91 (181)
77 KOG0996 Structural maintenance 51.1 4.3E+02 0.0093 30.5 14.3 99 150-248 462-580 (1293)
78 KOG3564 GTPase-activating prot 48.8 1.6E+02 0.0034 31.0 10.0 81 137-219 21-108 (604)
79 PRK14141 heat shock protein Gr 48.7 2.2E+02 0.0047 26.1 10.1 95 158-260 36-137 (209)
80 PF01025 GrpE: GrpE; InterPro 48.5 38 0.00083 28.1 4.8 19 205-223 58-76 (165)
81 KOG4431 Uncharacterized protei 47.5 14 0.00031 30.5 2.1 31 93-126 14-45 (100)
82 PHA02562 46 endonuclease subun 46.9 2.9E+02 0.0062 27.0 13.6 100 121-221 142-246 (562)
83 PRK11519 tyrosine kinase; Prov 46.8 3.6E+02 0.0078 28.1 16.2 63 182-256 333-395 (719)
84 TIGR03321 alt_F1F0_F0_B altern 46.4 2.2E+02 0.0048 25.6 15.8 54 119-172 12-65 (246)
85 PRK14149 heat shock protein Gr 46.3 1.8E+02 0.0039 26.3 9.0 90 162-260 45-136 (191)
86 PRK07352 F0F1 ATP synthase sub 45.9 1.9E+02 0.0041 24.6 17.2 46 124-169 31-76 (174)
87 PRK05759 F0F1 ATP synthase sub 44.3 1.8E+02 0.0039 23.9 15.5 54 117-170 9-62 (156)
88 KOG0976 Rho/Rac1-interacting s 44.2 5.2E+02 0.011 29.2 15.0 107 145-256 98-208 (1265)
89 PRK11677 hypothetical protein; 44.1 79 0.0017 27.1 6.1 34 145-178 35-68 (134)
90 PRK12704 phosphodiesterase; Pr 44.0 3.7E+02 0.008 27.5 17.0 26 231-256 124-149 (520)
91 PF10805 DUF2730: Protein of u 43.9 1.7E+02 0.0037 23.5 8.2 49 194-242 34-83 (106)
92 TIGR03513 GldL_gliding gliding 43.3 2.7E+02 0.0058 25.6 13.8 55 183-242 132-190 (202)
93 PF10112 Halogen_Hydrol: 5-bro 43.1 1.5E+02 0.0032 25.7 7.8 10 135-144 60-69 (199)
94 TIGR02680 conserved hypothetic 43.0 5.5E+02 0.012 29.2 16.0 63 188-250 290-352 (1353)
95 PRK14144 heat shock protein Gr 42.8 2.6E+02 0.0057 25.4 10.7 96 155-260 47-144 (199)
96 PF04100 Vps53_N: Vps53-like, 42.6 1.5E+02 0.0033 28.8 8.6 71 139-213 12-82 (383)
97 KOG0243 Kinesin-like protein [ 42.3 4.2E+02 0.0091 30.0 12.5 35 143-177 438-472 (1041)
98 PRK15022 ferritin-like protein 42.2 1.9E+02 0.0042 25.3 8.4 66 35-111 83-148 (167)
99 PRK10404 hypothetical protein; 42.1 1.9E+02 0.004 23.5 10.1 65 57-128 36-101 (101)
100 PF06109 HlyE: Haemolysin E (H 42.0 2.1E+02 0.0045 27.1 8.9 72 47-120 11-89 (299)
101 PF06005 DUF904: Protein of un 41.9 1.6E+02 0.0034 22.6 10.2 66 147-219 5-70 (72)
102 PF09730 BicD: Microtubule-ass 41.5 4.6E+02 0.0099 28.4 12.4 82 141-229 15-96 (717)
103 KOG2307 Low density lipoprotei 41.3 3.8E+02 0.0082 28.8 11.5 122 52-225 34-160 (705)
104 PRK14475 F0F1 ATP synthase sub 40.1 2.3E+02 0.005 24.0 15.5 39 130-168 28-66 (167)
105 PRK07353 F0F1 ATP synthase sub 39.9 2E+02 0.0043 23.2 15.2 57 115-171 8-64 (140)
106 PF09969 DUF2203: Uncharacteri 39.6 1.4E+02 0.003 24.9 6.7 30 232-261 44-73 (120)
107 PF15456 Uds1: Up-regulated Du 39.2 1.2E+02 0.0027 25.4 6.5 43 160-203 22-64 (124)
108 PF11382 DUF3186: Protein of u 38.7 1.2E+02 0.0026 28.6 7.0 55 113-180 12-66 (308)
109 PRK14159 heat shock protein Gr 38.7 2.8E+02 0.0062 24.6 9.6 79 180-260 43-123 (176)
110 PF05957 DUF883: Bacterial pro 38.5 1.8E+02 0.0039 22.3 11.1 80 43-128 15-94 (94)
111 PF14817 HAUS5: HAUS augmin-li 38.3 2.7E+02 0.0059 29.4 10.1 46 150-195 83-128 (632)
112 cd01056 Euk_Ferritin eukaryoti 38.3 2.3E+02 0.0051 23.5 8.9 52 35-96 84-136 (161)
113 PF05557 MAD: Mitotic checkpoi 38.2 4.9E+02 0.011 27.2 12.7 37 149-185 499-535 (722)
114 PF11932 DUF3450: Protein of u 38.0 3E+02 0.0065 24.7 11.5 17 241-258 149-165 (251)
115 PRK00888 ftsB cell division pr 37.5 1.3E+02 0.0027 24.4 6.1 58 117-174 11-69 (105)
116 PF12761 End3: Actin cytoskele 37.2 1.1E+02 0.0025 27.9 6.3 38 165-202 101-142 (195)
117 PF06009 Laminin_II: Laminin D 37.1 11 0.00024 31.3 0.0 100 150-249 7-108 (138)
118 PRK14157 heat shock protein Gr 36.9 2.8E+02 0.006 25.9 8.9 20 204-223 123-142 (227)
119 PF02646 RmuC: RmuC family; I 36.4 3.1E+02 0.0068 25.6 9.3 16 240-255 147-162 (304)
120 PF09730 BicD: Microtubule-ass 36.4 5.4E+02 0.012 27.8 12.0 74 145-221 358-431 (717)
121 PF10337 DUF2422: Protein of u 36.0 4.3E+02 0.0092 25.9 12.1 98 112-209 199-314 (459)
122 PRK00708 sec-independent trans 35.6 3.6E+02 0.0078 24.9 10.5 23 120-142 13-36 (209)
123 TIGR03794 NHPM_micro_HlyD NHPM 35.0 4.1E+02 0.0089 25.4 12.2 36 212-247 215-250 (421)
124 PF11559 ADIP: Afadin- and alp 34.9 2.6E+02 0.0057 23.1 11.1 83 117-202 36-122 (151)
125 PF09969 DUF2203: Uncharacteri 34.8 1.1E+02 0.0023 25.5 5.4 59 165-223 25-85 (120)
126 PF14235 DUF4337: Domain of un 34.8 1.2E+02 0.0025 26.3 5.8 58 148-205 68-130 (157)
127 COG1196 Smc Chromosome segrega 34.5 6.8E+02 0.015 27.8 14.3 113 145-258 694-806 (1163)
128 PF11157 DUF2937: Protein of u 34.4 1.4E+02 0.003 26.1 6.3 91 45-142 28-126 (167)
129 PF10168 Nup88: Nuclear pore c 34.2 1.4E+02 0.003 31.8 7.3 63 148-210 641-714 (717)
130 PF05278 PEARLI-4: Arabidopsis 34.1 4.3E+02 0.0093 25.3 12.9 93 150-255 163-255 (269)
131 PF05701 WEMBL: Weak chloropla 33.7 5.2E+02 0.011 26.2 21.7 97 153-249 309-411 (522)
132 PF08898 DUF1843: Domain of un 33.2 73 0.0016 23.8 3.7 31 145-175 20-53 (53)
133 KOG0964 Structural maintenance 33.2 7.4E+02 0.016 28.4 12.5 141 100-241 627-802 (1200)
134 PF12718 Tropomyosin_1: Tropom 33.2 3E+02 0.0066 23.3 14.0 99 149-252 31-132 (143)
135 PF12329 TMF_DNA_bd: TATA elem 33.1 2.2E+02 0.0048 21.7 9.9 69 151-219 3-71 (74)
136 PF00038 Filament: Intermediat 33.0 3.8E+02 0.0081 24.3 11.8 61 165-225 193-253 (312)
137 PRK05431 seryl-tRNA synthetase 32.2 4.1E+02 0.009 26.2 9.8 78 148-225 30-110 (425)
138 KOG0999 Microtubule-associated 32.1 5.8E+02 0.012 27.6 11.1 79 142-227 89-167 (772)
139 PF12128 DUF3584: Protein of u 32.0 7.6E+02 0.017 27.6 22.3 37 61-97 499-535 (1201)
140 TIGR01069 mutS2 MutS2 family p 31.7 6.7E+02 0.015 26.9 12.2 54 164-220 536-590 (771)
141 PF11657 Activator-TraM: Trans 31.3 3.5E+02 0.0076 23.5 9.3 25 98-122 113-137 (144)
142 TIGR02680 conserved hypothetic 31.2 8.4E+02 0.018 27.8 21.5 75 126-200 846-922 (1353)
143 cd00632 Prefoldin_beta Prefold 31.0 2.6E+02 0.0057 21.9 11.5 35 73-107 6-42 (105)
144 PRK03918 chromosome segregatio 30.9 6.3E+02 0.014 26.3 15.2 121 134-254 174-326 (880)
145 PF13815 Dzip-like_N: Iguana/D 30.9 2.9E+02 0.0063 22.4 8.5 54 147-200 60-113 (118)
146 TIGR01010 BexC_CtrB_KpsE polys 30.8 4.5E+02 0.0098 24.6 14.8 85 158-244 168-262 (362)
147 PRK10325 heat shock protein Gr 30.8 4E+02 0.0086 23.9 9.9 80 180-260 59-140 (197)
148 TIGR00606 rad50 rad50. This fa 30.6 8.2E+02 0.018 27.5 15.4 107 148-254 972-1080(1311)
149 PF06295 DUF1043: Protein of u 30.6 1.8E+02 0.0038 24.2 6.0 44 51-94 28-71 (128)
150 KOG0250 DNA repair protein RAD 30.4 8.6E+02 0.019 27.7 14.1 43 55-97 210-252 (1074)
151 PF01920 Prefoldin_2: Prefoldi 30.3 2.4E+02 0.0052 21.2 9.2 40 143-182 59-98 (106)
152 KOG1003 Actin filament-coating 30.2 3.6E+02 0.0077 25.1 8.3 70 151-220 2-71 (205)
153 TIGR03545 conserved hypothetic 29.7 3.7E+02 0.0081 27.8 9.3 36 124-163 146-181 (555)
154 PF15136 UPF0449: Uncharacteri 29.1 1.1E+02 0.0025 25.1 4.5 31 173-203 66-96 (97)
155 KOG3501 Molecular chaperone Pr 29.0 3.6E+02 0.0079 22.9 7.6 42 142-183 63-104 (114)
156 PF08657 DASH_Spc34: DASH comp 28.9 1.6E+02 0.0034 27.6 6.1 66 110-185 134-212 (259)
157 KOG1937 Uncharacterized conser 28.8 6.9E+02 0.015 26.1 14.2 77 146-223 300-380 (521)
158 PRK10698 phage shock protein P 28.7 4.4E+02 0.0095 23.8 12.7 70 148-220 47-124 (222)
159 PRK11677 hypothetical protein; 28.6 1.6E+02 0.0034 25.2 5.5 42 51-92 32-73 (134)
160 COG5185 HEC1 Protein involved 28.3 7.4E+02 0.016 26.3 14.8 109 142-254 253-387 (622)
161 TIGR02449 conserved hypothetic 28.3 2.7E+02 0.0059 21.3 9.2 61 148-208 2-62 (65)
162 PF08285 DPM3: Dolichol-phosph 28.0 50 0.0011 26.4 2.3 25 147-171 62-86 (91)
163 PRK12704 phosphodiesterase; Pr 28.0 6.7E+02 0.014 25.7 12.3 36 166-201 81-116 (520)
164 PF01706 FliG_C: FliG C-termin 28.0 1.8E+02 0.0039 23.0 5.5 44 216-259 59-106 (110)
165 COG2882 FliJ Flagellar biosynt 27.9 2.5E+02 0.0054 24.5 6.7 52 54-109 15-66 (148)
166 TIGR03319 YmdA_YtgF conserved 27.8 6.7E+02 0.014 25.6 17.0 27 231-257 118-144 (514)
167 PF02185 HR1: Hr1 repeat; Int 27.4 2.3E+02 0.005 20.7 5.6 30 147-176 34-63 (70)
168 PRK10476 multidrug resistance 27.1 5.1E+02 0.011 24.0 11.9 54 148-201 116-172 (346)
169 KOG4154 Arginine-rich protein 27.1 59 0.0013 28.9 2.7 31 112-142 7-43 (178)
170 KOG2077 JNK/SAPK-associated pr 26.7 4.7E+02 0.01 28.3 9.5 77 159-255 342-419 (832)
171 smart00787 Spc7 Spc7 kinetocho 26.4 5.8E+02 0.013 24.4 12.4 23 214-236 261-283 (312)
172 PF07246 Phlebovirus_NSM: Phle 26.3 2.7E+02 0.0059 26.6 7.2 54 136-193 189-242 (264)
173 PF10174 Cast: RIM-binding pro 26.2 7.7E+02 0.017 26.9 11.2 106 148-256 55-163 (775)
174 PF04977 DivIC: Septum formati 26.1 1.8E+02 0.004 20.8 4.8 29 144-172 22-50 (80)
175 COG4238 Murein lipoprotein [Ce 25.9 3.5E+02 0.0076 21.7 7.8 46 145-190 24-69 (78)
176 PF09006 Surfac_D-trimer: Lung 25.9 1.4E+02 0.003 21.8 4.0 24 155-178 1-24 (46)
177 PRK13461 F0F1 ATP synthase sub 25.9 3.9E+02 0.0084 22.2 15.3 52 121-172 14-65 (159)
178 COG4026 Uncharacterized protei 25.7 6.1E+02 0.013 24.4 9.8 72 150-221 132-203 (290)
179 cd07593 BAR_MUG137_fungi The B 25.7 5.1E+02 0.011 23.6 9.7 25 148-172 116-140 (215)
180 PF02388 FemAB: FemAB family; 25.5 4E+02 0.0086 25.9 8.3 54 152-209 241-294 (406)
181 PRK13460 F0F1 ATP synthase sub 25.3 4.2E+02 0.0092 22.5 14.2 59 115-173 19-77 (173)
182 PRK09841 cryptic autophosphory 25.1 8.1E+02 0.018 25.7 12.2 108 144-256 251-360 (726)
183 PF06717 DUF1202: Protein of u 24.8 1.5E+02 0.0033 28.9 5.3 45 145-189 137-181 (308)
184 PF10828 DUF2570: Protein of u 24.8 3.7E+02 0.008 21.6 9.8 74 148-221 27-108 (110)
185 PRK00409 recombination and DNA 24.5 9E+02 0.019 26.0 14.3 19 204-222 579-597 (782)
186 KOG0977 Nuclear envelope prote 24.5 8.4E+02 0.018 25.7 12.7 52 181-232 176-227 (546)
187 PF10146 zf-C4H2: Zinc finger- 24.4 5.6E+02 0.012 23.6 12.7 80 136-215 22-101 (230)
188 TIGR01000 bacteriocin_acc bact 24.3 6.7E+02 0.015 24.4 13.1 32 150-181 169-200 (457)
189 PF12325 TMF_TATA_bd: TATA ele 24.3 4.3E+02 0.0092 22.1 14.0 52 191-243 64-115 (120)
190 PF13118 DUF3972: Protein of u 24.3 1.3E+02 0.0028 25.8 4.2 29 34-62 64-92 (126)
191 PRK01156 chromosome segregatio 24.2 8.7E+02 0.019 25.7 19.5 28 145-172 635-662 (895)
192 PF10046 BLOC1_2: Biogenesis o 24.2 3.6E+02 0.0078 21.3 10.9 70 145-218 27-96 (99)
193 PF12732 YtxH: YtxH-like prote 24.1 3E+02 0.0065 20.3 9.2 17 115-131 9-25 (74)
194 PF02944 BESS: BESS motif; In 23.7 78 0.0017 20.9 2.3 26 212-237 9-34 (37)
195 PRK11578 macrolide transporter 23.6 6.1E+02 0.013 23.7 9.3 25 161-185 107-131 (370)
196 PRK10698 phage shock protein P 23.5 5.5E+02 0.012 23.2 12.4 99 147-252 18-116 (222)
197 PF05546 She9_MDM33: She9 / Md 23.5 6E+02 0.013 23.6 10.0 50 168-217 33-82 (207)
198 COG4575 ElaB Uncharacterized c 23.3 4.5E+02 0.0097 22.0 8.0 75 33-128 30-104 (104)
199 PF05667 DUF812: Protein of un 23.2 8.9E+02 0.019 25.4 14.5 105 143-254 318-431 (594)
200 PRK15422 septal ring assembly 23.1 4E+02 0.0086 21.4 10.6 54 147-200 5-61 (79)
201 COG4283 Uncharacterized conser 23.1 1.3E+02 0.0027 27.2 4.1 52 139-190 2-59 (170)
202 KOG0994 Extracellular matrix g 23.1 1.3E+03 0.028 27.4 25.1 193 29-223 1404-1626(1758)
203 PF01442 Apolipoprotein: Apoli 23.1 3.9E+02 0.0085 21.3 21.0 31 207-241 164-194 (202)
204 PF13801 Metal_resist: Heavy-m 23.0 2.2E+02 0.0047 21.1 4.9 21 181-201 59-79 (125)
205 PRK02195 V-type ATP synthase s 22.9 4.5E+02 0.0097 23.5 7.6 16 26-41 109-124 (201)
206 PF06305 DUF1049: Protein of u 22.7 92 0.002 22.2 2.7 12 114-125 27-38 (68)
207 KOG1268 Glucosamine 6-phosphat 22.5 37 0.0008 35.7 0.7 44 203-247 485-530 (670)
208 TIGR00984 3a0801s03tim44 mitoc 22.3 4.1E+02 0.0089 26.5 7.8 23 152-174 7-29 (378)
209 PF13600 DUF4140: N-terminal d 22.1 2.4E+02 0.0052 21.7 5.1 32 152-183 69-100 (104)
210 smart00435 TOPEUc DNA Topoisom 22.1 5.9E+02 0.013 25.6 8.9 27 191-218 339-365 (391)
211 PRK13453 F0F1 ATP synthase sub 21.8 5.1E+02 0.011 22.1 15.5 59 113-171 19-77 (173)
212 TIGR01069 mutS2 MutS2 family p 21.7 1E+03 0.022 25.6 14.4 26 140-165 491-516 (771)
213 PF04588 HIG_1_N: Hypoxia indu 21.4 60 0.0013 23.2 1.5 19 107-125 1-19 (54)
214 PF06295 DUF1043: Protein of u 21.3 4.8E+02 0.01 21.6 7.4 33 145-177 31-63 (128)
215 PF00430 ATP-synt_B: ATP synth 21.3 4E+02 0.0087 20.8 12.0 45 129-173 16-60 (132)
216 cd00584 Prefoldin_alpha Prefol 21.2 3.1E+02 0.0067 21.9 5.7 37 148-184 89-125 (129)
217 PF12709 Kinetocho_Slk19: Cent 21.2 3.6E+02 0.0078 21.8 6.0 35 150-184 46-80 (87)
218 KOG4674 Uncharacterized conser 21.1 9.5E+02 0.02 29.0 11.2 77 145-221 425-501 (1822)
219 PLN03223 Polycystin cation cha 21.0 2.4E+02 0.0051 33.1 6.4 55 161-215 1572-1629(1634)
220 PRK12779 putative bifunctional 20.9 4.1E+02 0.0089 29.1 8.1 89 51-139 16-112 (944)
221 COG4942 Membrane-bound metallo 20.9 7.2E+02 0.016 25.3 9.2 63 147-209 46-108 (420)
222 COG2433 Uncharacterized conser 20.9 1.1E+03 0.023 25.5 13.8 26 69-97 337-362 (652)
223 PLN03098 LPA1 LOW PSII ACCUMUL 20.8 6.4E+02 0.014 25.9 8.9 26 31-56 73-98 (453)
224 KOG0996 Structural maintenance 20.7 1.4E+03 0.03 26.7 14.1 118 137-254 332-470 (1293)
225 cd00890 Prefoldin Prefoldin is 20.5 4.2E+02 0.009 20.6 6.8 42 143-184 84-125 (129)
226 cd00089 HR1 Protein kinase C-r 20.5 1.9E+02 0.0042 21.3 4.1 28 147-174 43-70 (72)
227 PF02403 Seryl_tRNA_N: Seryl-t 20.3 4.2E+02 0.009 20.5 8.4 27 150-176 33-59 (108)
228 COG3883 Uncharacterized protei 20.2 7.7E+02 0.017 23.6 10.6 80 176-256 33-112 (265)
229 PF13997 YqjK: YqjK-like prote 20.1 1E+02 0.0022 23.6 2.5 30 101-133 30-59 (73)
230 PRK09174 F0F1 ATP synthase sub 20.0 6.3E+02 0.014 22.6 15.0 43 130-172 71-113 (204)
No 1
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=97.60 E-value=0.0014 Score=50.80 Aligned_cols=82 Identities=18% Similarity=0.227 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhChhhhhHHHHH
Q 024845 41 QVMIYRKIVEESIDSAIEASRSRLSQTRLTASVHFQQTLDYLQDVKSEYAAYEDAAVGKVKEGIHVAASHPFITAGGAIG 120 (261)
Q Consensus 41 qa~~~qk~~~~s~d~ai~a~~sr~s~~~~ts~~h~~~~~~~l~~~~sey~~yEd~~f~kiKegv~~A~~hP~~a~g~a~~ 120 (261)
+..-+..-+.+-++++-+.+.....++++.-..++.++.+.+.++..+.+.--..... ..-..+++||+-+.|+|++
T Consensus 6 ~l~~l~~d~~~l~~~~~~~~~~~~~~~r~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~~~~~V~e~P~~svgiAag 82 (94)
T PF05957_consen 6 ELEQLRADLEDLARSAADLAGEKADEARDRAEEALDDARDRAEDAADQAREQAREAAE---QTEDYVRENPWQSVGIAAG 82 (94)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHChHHHHHHHHH
Confidence 4444666677777777777777777888887777777777777665554332222222 2244678999999999999
Q ss_pred HHHhh
Q 024845 121 LGSFL 125 (261)
Q Consensus 121 ag~ll 125 (261)
+|||+
T Consensus 83 vG~ll 87 (94)
T PF05957_consen 83 VGFLL 87 (94)
T ss_pred HHHHH
Confidence 99986
No 2
>PRK10404 hypothetical protein; Provisional
Probab=96.47 E-value=0.054 Score=43.81 Aligned_cols=77 Identities=12% Similarity=0.189 Sum_probs=52.9
Q ss_pred HHHHHHHHHHhHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh----HHHhhhChhhhhHH
Q 024845 42 VMIYRKIVEESIDSAIEASRSRLSQTRLTASVHFQQTLDYLQDVKSEYAAYEDAAVGKVKEG----IHVAASHPFITAGG 117 (261)
Q Consensus 42 a~~~qk~~~~s~d~ai~a~~sr~s~~~~ts~~h~~~~~~~l~~~~sey~~yEd~~f~kiKeg----v~~A~~hP~~a~g~ 117 (261)
-..+-.++.+-..++-+.+.....++|+....++..+++.|.++... +..+-|+. -..+++||+-++|+
T Consensus 14 l~~L~~dle~Ll~~~~~~a~e~~~~lR~r~~~~L~~ar~~l~~~~~~-------~~~~~k~aa~~td~yV~e~Pw~avGi 86 (101)
T PRK10404 14 LTLLSETLEEVLRSSGDPADQKYVELKARAEKALDDVKKRVSQASDS-------YYYRAKQAVYRADDYVHEKPWQGIGV 86 (101)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH-------HHHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 34455555555555556666667778888888888887777766553 33333333 45788899999999
Q ss_pred HHHHHHhh
Q 024845 118 AIGLGSFL 125 (261)
Q Consensus 118 a~~ag~ll 125 (261)
++++|||+
T Consensus 87 aagvGlll 94 (101)
T PRK10404 87 GAAVGLVL 94 (101)
T ss_pred HHHHHHHH
Confidence 99998875
No 3
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=95.89 E-value=0.92 Score=38.45 Aligned_cols=125 Identities=21% Similarity=0.278 Sum_probs=70.2
Q ss_pred hhhhhHHHHHHHHhhcccchhHHHHHhhhhh-cCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024845 111 PFITAGGAIGLGSFLLKRPRHFLYYNTLRLF-ASE-------ESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDE 182 (261)
Q Consensus 111 P~~a~g~a~~ag~lll~~PRrfL~r~TlgrF-~SE-------Eall~~Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~E 182 (261)
+.+.+++.+++|++++..-=.++.......- +.+ +.-+...+....++...++.+.+....+......-+++
T Consensus 38 s~~lg~~~lAlg~vL~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~ 117 (191)
T PF04156_consen 38 SFILGIALLALGVVLLSLGLLCLLSKRPVQSVRPQQIEEPRLQGELSELQQQLQQLQEELDQLQERIQELESELEKLKED 117 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccccccchHHHHHhhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555566677777665555543332211 111 12445555555556666666666666666666666666
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhccCCchHHHHHHHHHhHhHHHHHHH
Q 024845 183 LIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIVGELPRREASRFRSQVSNIASEAKRE 243 (261)
Q Consensus 183 ~~rGrtkLr~ag~qiq~l~~s~yk~E~~A~gL~d~Lr~LP~reA~~LRseVAs~AS~vK~q 243 (261)
+...+..++.....++.+-.....+++....|. ++-.+.+.++..+...++.-
T Consensus 118 ~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~--------~~~~~~~~~~~~~~~~~~~~ 170 (191)
T PF04156_consen 118 LQELRELLKSVEERLDSLDESIKELEKEIRELQ--------KELQDSREEVQELRSQLERL 170 (191)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHH
Confidence 666666677777777777777777777766666 33334444444444444433
No 4
>PRK10132 hypothetical protein; Provisional
Probab=95.05 E-value=0.46 Score=38.96 Aligned_cols=60 Identities=13% Similarity=0.295 Sum_probs=34.8
Q ss_pred HHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH----HHhhhChhhhhHHHHHHHHhh
Q 024845 58 EASRSRLSQTRLTASVHFQQTLDYLQDVKSEYAAYEDAAVGKVKEGI----HVAASHPFITAGGAIGLGSFL 125 (261)
Q Consensus 58 ~a~~sr~s~~~~ts~~h~~~~~~~l~~~~sey~~yEd~~f~kiKegv----~~A~~hP~~a~g~a~~ag~ll 125 (261)
+.+.....++++.-...+..+.+.|.+...- ..+.|+.+ ..+++||+-++|+++++|||+
T Consensus 37 ~~~~~~~~~lR~r~~~~L~~ar~~l~~~~~~--------~~~~~~a~~~~~~~V~~~Pw~svgiaagvG~ll 100 (108)
T PRK10132 37 SDAKGEAEAARRKAQALLKETRARMHGRTRV--------QQAARDAVGCADTFVRERPWCSVGTAAAVGIFI 100 (108)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhHHH--------HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 3333344446665555666665555543321 12223333 367789999999988888875
No 5
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=94.86 E-value=0.26 Score=40.79 Aligned_cols=83 Identities=22% Similarity=0.282 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH----HhhhCh
Q 024845 36 DNAVQQVMIYRKIVEESIDSAIEASRSRLSQTRLTASVHFQQTLDYLQDVKSEYAAYEDAAVGKVKEGIH----VAASHP 111 (261)
Q Consensus 36 ~~a~~qa~~~qk~~~~s~d~ai~a~~sr~s~~~~ts~~h~~~~~~~l~~~~sey~~yEd~~f~kiKegv~----~A~~hP 111 (261)
+..+.--+.|--+.++-.++.=..|.-...+|+...-+-+..+++-|.+.. |.+....|+.+. ++.+||
T Consensus 11 ~~l~~el~~L~d~lEevL~ssg~~a~~e~~~lR~r~~~~Lk~~r~rl~~~~-------d~v~~~sk~a~~~tD~yV~e~P 83 (104)
T COG4575 11 DQLLAELQELLDTLEEVLKSSGSLAGDEAEELRSKAESALKEARDRLGDTG-------DAVVQRSKAAADATDDYVRENP 83 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHhhh-------hHHHHHHHHHHHHHHHHHHcCC
Confidence 443333444444555555555555555666677666666666666555554 555555565554 678899
Q ss_pred hhhhHHHHHHHHhh
Q 024845 112 FITAGGAIGLGSFL 125 (261)
Q Consensus 112 ~~a~g~a~~ag~ll 125 (261)
.=++|++++.|||+
T Consensus 84 Wq~VGvaAaVGlll 97 (104)
T COG4575 84 WQGVGVAAAVGLLL 97 (104)
T ss_pred chHHHHHHHHHHHH
Confidence 99999999988875
No 6
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=94.50 E-value=1.4 Score=40.89 Aligned_cols=122 Identities=17% Similarity=0.257 Sum_probs=72.9
Q ss_pred HHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH---------HHHHHHHHHHH
Q 024845 134 YYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQA---------GKQIQGVINSA 204 (261)
Q Consensus 134 ~r~TlgrF~SEEall~~Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr~a---------g~qiq~l~~s~ 204 (261)
++..+...++ .+.++-..+..++..++.++++...++....-.++.+.+++.+|.+. .++|+-+-+..
T Consensus 29 ~~~~l~k~~~---e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~ 105 (239)
T COG1579 29 IRKALKKAKA---ELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERI 105 (239)
T ss_pred hHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 3344444443 45555556666666666666666666666666666666666665332 34444444444
Q ss_pred HHHHHHHhhHHHHhccCCchHHHHHHHHHhHhHHHHHHHHHHHHHHHHhhhhcCC
Q 024845 205 YKIERQAAGLKDIVGELPRREASRFRSQVSNIASEAKRERNALTKEVSKISNYGI 259 (261)
Q Consensus 205 yk~E~~A~gL~d~Lr~LP~reA~~LRseVAs~AS~vK~qR~aL~k~l~KIs~~GI 259 (261)
-..|.....|++.+..| .++...++.++..+-..+...+..++.++.+|-+-|.
T Consensus 106 ~~le~el~~l~~~~~~l-~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~ 159 (239)
T COG1579 106 NSLEDELAELMEEIEKL-EKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQ 159 (239)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555544444 3566777788888877888888888888888876554
No 7
>PRK11637 AmiB activator; Provisional
Probab=93.83 E-value=4.1 Score=39.15 Aligned_cols=93 Identities=10% Similarity=0.209 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhccCCchHHHHH
Q 024845 150 RADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIVGELPRREASRF 229 (261)
Q Consensus 150 ~Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr~ag~qiq~l~~s~yk~E~~A~gL~d~Lr~LP~reA~~L 229 (261)
..+.+.+++++.++.++++++.+.+.....+.++..=..+|..+..+|..+-..+-.++... ..+
T Consensus 44 ~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei---------------~~l 108 (428)
T PRK11637 44 DNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQI---------------DEL 108 (428)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHH
Confidence 34455555555555555555555555554444444434444444444443333333333332 234
Q ss_pred HHHHhHhHHHHHHHHHHHHHHHHhhhhc
Q 024845 230 RSQVSNIASEAKRERNALTKEVSKISNY 257 (261)
Q Consensus 230 RseVAs~AS~vK~qR~aL~k~l~KIs~~ 257 (261)
..++..+-.++..++..|.+++.-+-..
T Consensus 109 ~~eI~~~q~~l~~~~~~l~~rlra~Y~~ 136 (428)
T PRK11637 109 NASIAKLEQQQAAQERLLAAQLDAAFRQ 136 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4455555555566666665555544443
No 8
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=93.36 E-value=3.6 Score=37.11 Aligned_cols=118 Identities=14% Similarity=0.216 Sum_probs=91.4
Q ss_pred hhcccchhHHH---------HHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 024845 124 FLLKRPRHFLY---------YNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAG 194 (261)
Q Consensus 124 lll~~PRrfL~---------r~TlgrF~SEEall~~Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr~ag 194 (261)
..+|.|.+++| +.-.+.+..-...+...+..+..|...++.+.....+....+........+-+..-..-.
T Consensus 14 ~~~~~~~~l~~~~e~~~~~L~~~~~~~~~~~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~ 93 (264)
T PF06008_consen 14 GAWPAPYKLLSSIEDLTNQLRSYRSKLNPQKQQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLE 93 (264)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34689999988 223333444455688888888888888888888888888777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHhccCCchHHHHHHHHHhHhHHHHH
Q 024845 195 KQIQGVINSAYKIERQAAGLKDIVGELPRREASRFRSQVSNIASEAK 241 (261)
Q Consensus 195 ~qiq~l~~s~yk~E~~A~gL~d~Lr~LP~reA~~LRseVAs~AS~vK 241 (261)
..|+.+...|-.+-.++.+|=.....+|+.+-.+...|+..|-.+++
T Consensus 94 ~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~l~ea~~mL~emr 140 (264)
T PF06008_consen 94 QFIQNLQDNIQELIEQVESLNENGDQLPSEDLQRALAEAQRMLEEMR 140 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 78888888888888888877777778899888888899999988875
No 9
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=88.29 E-value=10 Score=37.92 Aligned_cols=104 Identities=18% Similarity=0.200 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhhHH--HHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 024845 145 ESLLSRADTKVKQLRQSI-----DRLKAESEKLEKVALVAEDELIRGRT--KLRQAGKQIQGVINSAYKIERQAAGLKDI 217 (261)
Q Consensus 145 Eall~~Ae~~v~eLr~sv-----dl~k~Es~KL~eraa~AE~E~~rGrt--kLr~ag~qiq~l~~s~yk~E~~A~gL~d~ 217 (261)
++|+..+|+-||+|..-+ .-...|.++.++|+..|...|..=|+ .+-.-.++......-|.+.|.+-..+.-.
T Consensus 222 ~aLL~~sE~~VN~Ls~rar~D~v~~Ae~ev~~Ae~rl~~Ar~aL~~fRn~~gvlDP~~~a~~~~~lI~~Le~qLa~~~ae 301 (434)
T PRK15178 222 QRILSFAEQHVNTVSARMQKERILWLENDVKSAQENLGAARLELLKIQHIQKDIDPKETITAIYQLIAGFETQLAEAKAE 301 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999997643 33444454445554444444432111 12223566777777789999988888877
Q ss_pred hccC-----Cc-hHHHHHHHHHhHhHHHHHHHHHHHH
Q 024845 218 VGEL-----PR-REASRFRSQVSNIASEAKRERNALT 248 (261)
Q Consensus 218 Lr~L-----P~-reA~~LRseVAs~AS~vK~qR~aL~ 248 (261)
|..| |. .+-..|+++|+.|-.++..+|.-|.
T Consensus 302 L~~L~~~~~p~sPqV~~l~~rI~aLe~QIa~er~kl~ 338 (434)
T PRK15178 302 YAQLMVNGLDQNPLIPRLSAKIKVLEKQIGEQRNRLS 338 (434)
T ss_pred HHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhh
Confidence 7755 33 5566788999999999988887774
No 10
>PRK14161 heat shock protein GrpE; Provisional
Probab=87.50 E-value=14 Score=32.65 Aligned_cols=77 Identities=26% Similarity=0.329 Sum_probs=56.4
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhccC
Q 024845 142 ASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIVGEL 221 (261)
Q Consensus 142 ~SEEall~~Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr~ag~qiq~l~~s~yk~E~~A~gL~d~Lr~L 221 (261)
.+|+.+..-++.-|+.++..++.++.|...+.++..-+..||..=|-... ++.... .-|..++-+..|+..+..|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~ei~~l~~e~~elkd~~lR~~AefeN~rkR~~---ke~~~~--~~~a~~~~~~~LLpv~Dnl 82 (178)
T PRK14161 8 NNEQTINDIAEEIVETANPEITALKAEIEELKDKLIRTTAEIDNTRKRLE---KARDEA--KDYAIATFAKELLNVSDNL 82 (178)
T ss_pred ccHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH--HHHHHHHHHHHHhhHHhHH
Confidence 36888999999999999999999998888888877766666665443222 232222 2577888899998888777
Q ss_pred Cc
Q 024845 222 PR 223 (261)
Q Consensus 222 P~ 223 (261)
=+
T Consensus 83 er 84 (178)
T PRK14161 83 SR 84 (178)
T ss_pred HH
Confidence 54
No 11
>PRK14160 heat shock protein GrpE; Provisional
Probab=87.09 E-value=17 Score=33.16 Aligned_cols=106 Identities=16% Similarity=0.164 Sum_probs=61.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH--HHHHHHHHhhHHHHhcc
Q 024845 143 SEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINS--AYKIERQAAGLKDIVGE 220 (261)
Q Consensus 143 SEEall~~Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr~ag~qiq~l~~s--~yk~E~~A~gL~d~Lr~ 220 (261)
|+|+.+...+..+..|...++.++.+...|.++..-+..||. +..+-.++-... -|..++-+..|+..+..
T Consensus 51 ~~~~~~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~Aefe-------N~RKR~~kE~e~~~~~a~e~~~~~LLpVlDn 123 (211)
T PRK14160 51 SNEVKIEELKDENNKLKEENKKLENELEALKDRLLRTVAEYD-------NYRKRTAKEKEGIYSDACEDVLKELLPVLDN 123 (211)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhHHhH
Confidence 455566666666666666666666666666666555555544 433333333322 57788889999988888
Q ss_pred CCchHHHHHHHHHhHhHHHHHHHHHHHHHHHHhhhhcCCC
Q 024845 221 LPRREASRFRSQVSNIASEAKRERNALTKEVSKISNYGIS 260 (261)
Q Consensus 221 LP~reA~~LRseVAs~AS~vK~qR~aL~k~l~KIs~~GI~ 260 (261)
|=+.-.. -.. ..+-++.-..++.+-+.-..++||.
T Consensus 124 LerAl~~--~~~---~~~l~~Gv~mi~kql~~vL~k~GVe 158 (211)
T PRK14160 124 LERAAAV--EGS---VEDLKKGIEMTVKQFKTSLEKLGVE 158 (211)
T ss_pred HHHHHhc--ccc---hhHHHHHHHHHHHHHHHHHHHCCCE
Confidence 7654221 111 1223344445555555555667763
No 12
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=86.12 E-value=18 Score=29.94 Aligned_cols=58 Identities=28% Similarity=0.352 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 024845 147 LLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSA 204 (261)
Q Consensus 147 ll~~Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr~ag~qiq~l~~s~ 204 (261)
.-.....+...+...++.+.+..++|.++....|.++.--..+.++...+++++....
T Consensus 53 ~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~ 110 (151)
T PF11559_consen 53 QREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKL 110 (151)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566777888888888999999999999999999888888888888888775443
No 13
>PRK10132 hypothetical protein; Provisional
Probab=85.52 E-value=9.1 Score=31.46 Aligned_cols=65 Identities=14% Similarity=0.078 Sum_probs=50.2
Q ss_pred HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhChhhhhHHHHHHHHhhccc
Q 024845 57 IEASRSRLSQTRLTASVHFQQTLDYLQDVKSEYAAYEDAAVGKVKEGIHVAASHPFITAGGAIGLGSFLLKR 128 (261)
Q Consensus 57 i~a~~sr~s~~~~ts~~h~~~~~~~l~~~~sey~~yEd~~f~kiKegv~~A~~hP~~a~g~a~~ag~lll~~ 128 (261)
++.+|.|+....+.+-..+..+.+..++.+.-...-++.+=.++=.+| +|++|+++.+|+|+-||
T Consensus 43 ~~~lR~r~~~~L~~ar~~l~~~~~~~~~~~~a~~~~~~~V~~~Pw~sv-------giaagvG~llG~Ll~RR 107 (108)
T PRK10132 43 AEAARRKAQALLKETRARMHGRTRVQQAARDAVGCADTFVRERPWCSV-------GTAAAVGIFIGALLSLR 107 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCcHHHH-------HHHHHHHHHHHHHHhcc
Confidence 588899998888888888888777666666666677776666764444 47899999999998764
No 14
>PRK11637 AmiB activator; Provisional
Probab=84.86 E-value=39 Score=32.62 Aligned_cols=62 Identities=8% Similarity=0.178 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 024845 146 SLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKI 207 (261)
Q Consensus 146 all~~Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr~ag~qiq~l~~s~yk~ 207 (261)
.-++..+.++..+...++....++..+...+...++++..-..+|.....++...+..+|+.
T Consensus 75 ~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y~~ 136 (428)
T PRK11637 75 AQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAFRQ 136 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34555566666666677777777777777777777777777777888888888888888874
No 15
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=84.78 E-value=21 Score=32.86 Aligned_cols=93 Identities=20% Similarity=0.285 Sum_probs=55.6
Q ss_pred hhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 024845 137 TLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKD 216 (261)
Q Consensus 137 TlgrF~SEEall~~Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr~ag~qiq~l~~s~yk~E~~A~gL~d 216 (261)
-+++...+++. ..|.++...++..++..++ |.+......++...=+++|+...+.+....+.+--..+|+.++.+
T Consensus 119 ll~~l~~l~~~-~~~~~~~~~lk~~~~~~~~----~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~ 193 (216)
T KOG1962|consen 119 LLRELATLRAN-EKAMKENEALKKQLENSSK----LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQD 193 (216)
T ss_pred HHHHHHHHHhh-HHHHHHHHHHHHhhhcccc----hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 34555555554 5556666666666655444 334444444444444555555556666666667777788888777
Q ss_pred HhccCCchHHHHHHHHHhH
Q 024845 217 IVGELPRREASRFRSQVSN 235 (261)
Q Consensus 217 ~Lr~LP~reA~~LRseVAs 235 (261)
.-..| ..+.++||.||-+
T Consensus 194 EydrL-lee~~~Lq~~i~~ 211 (216)
T KOG1962|consen 194 EYDRL-LEEYSKLQEQIES 211 (216)
T ss_pred HHHHH-HHHHHHHHHHHhc
Confidence 66555 3577888888753
No 16
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=84.28 E-value=42 Score=33.79 Aligned_cols=78 Identities=21% Similarity=0.278 Sum_probs=55.3
Q ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhc
Q 024845 140 LFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIVG 219 (261)
Q Consensus 140 rF~SEEall~~Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr~ag~qiq~l~~s~yk~E~~A~gL~d~Lr 219 (261)
.+.++ .-++..+++.+.+..++...+.+.++|++.+.-.|.++..=...|++++..+..+ ++.-..+-+.|.
T Consensus 33 ~~a~~-~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~-------~~~I~~~~~~l~ 104 (420)
T COG4942 33 AAADD-KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKL-------RKQIADLNARLN 104 (420)
T ss_pred HHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-------HhhHHHHHHHHH
Confidence 44444 6788899999999999999999999999888888877766665555555555554 444444445555
Q ss_pred cCCchH
Q 024845 220 ELPRRE 225 (261)
Q Consensus 220 ~LP~re 225 (261)
.|+..+
T Consensus 105 ~l~~q~ 110 (420)
T COG4942 105 ALEVQE 110 (420)
T ss_pred HHHHHH
Confidence 555544
No 17
>PRK09039 hypothetical protein; Validated
Probab=83.64 E-value=42 Score=32.10 Aligned_cols=153 Identities=16% Similarity=0.191 Sum_probs=102.1
Q ss_pred HHHHHHHHHhHHHHHHHHhhhhhhhh---hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH--HhhhChhhhhHH
Q 024845 43 MIYRKIVEESIDSAIEASRSRLSQTR---LTASVHFQQTLDYLQDVKSEYAAYEDAAVGKVKEGIH--VAASHPFITAGG 117 (261)
Q Consensus 43 ~~~qk~~~~s~d~ai~a~~sr~s~~~---~ts~~h~~~~~~~l~~~~sey~~yEd~~f~kiKegv~--~A~~hP~~a~g~ 117 (261)
|++=.---+..|..++...++++++- +--..+-...++.|..+..+|...|..== .++.-.. ....+|.-
T Consensus 41 q~fLs~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~-~Le~~~~~~~~~~~~~~---- 115 (343)
T PRK09039 41 QFFLSREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERS-RLQALLAELAGAGAAAE---- 115 (343)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhhhcchHH----
Confidence 33333334556777777776665543 33445556677778888888876554211 1111000 00011211
Q ss_pred HHHHHHhhcccchhHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 024845 118 AIGLGSFLLKRPRHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQI 197 (261)
Q Consensus 118 a~~ag~lll~~PRrfL~r~TlgrF~SEEall~~Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr~ag~qi 197 (261)
..++-+ -..+..+.+..+.+...|.-|++-|+.+++.+..|+..+..+|.+-.--+.++..-+..|
T Consensus 116 -~~~~~l-------------~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L 181 (343)
T PRK09039 116 -GRAGEL-------------AQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRL 181 (343)
T ss_pred -HHHHHH-------------HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111211 277888999999999999999999999999999999999999999988899999999999
Q ss_pred HHHHHH-HHHHHHHHhhH
Q 024845 198 QGVINS-AYKIERQAAGL 214 (261)
Q Consensus 198 q~l~~s-~yk~E~~A~gL 214 (261)
+..+.. +-..++=...+
T Consensus 182 ~~a~~~~~~~l~~~~~~~ 199 (343)
T PRK09039 182 NVALAQRVQELNRYRSEF 199 (343)
T ss_pred HHHHHHHHHHHHHhHHHH
Confidence 988744 55555555555
No 18
>PRK14140 heat shock protein GrpE; Provisional
Probab=83.02 E-value=22 Score=31.97 Aligned_cols=95 Identities=17% Similarity=0.218 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH--HHHHHHHHHhhHHHHhccCCchHHHHHHHHHh
Q 024845 157 QLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVIN--SAYKIERQAAGLKDIVGELPRREASRFRSQVS 234 (261)
Q Consensus 157 eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr~ag~qiq~l~~--s~yk~E~~A~gL~d~Lr~LP~reA~~LRseVA 234 (261)
++...++.++.|+..|.++. +|-..++-+..+-.++-.. .-|.+++-+..|++.+..|=+ |+.--++-.
T Consensus 41 ~l~~~i~~l~~ei~elkd~~-------lR~~Ae~eN~rkR~~rE~~~~~~~a~~~~~~~LLpvlDnLer--Al~~~~~~~ 111 (191)
T PRK14140 41 EEQAKIAELEAKLDELEERY-------LRLQADFENYKRRIQKENEAAEKYRAQSLASDLLPALDNFER--ALQIEADDE 111 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhccCccc
Confidence 33444444444444444444 4444444444443333333 357788999999998888733 222111111
Q ss_pred HhHHHHHHHHHHHHHHHHhhhhcCCC
Q 024845 235 NIASEAKRERNALTKEVSKISNYGIS 260 (261)
Q Consensus 235 s~AS~vK~qR~aL~k~l~KIs~~GI~ 260 (261)
...+-+..-..++.+-++-..+|||.
T Consensus 112 ~~~~i~~Gv~mi~k~l~~~L~k~GV~ 137 (191)
T PRK14140 112 QTKSLLKGVEMVHRQLLEALKKEGVE 137 (191)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHCCCE
Confidence 12233344445555555555677764
No 19
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=82.86 E-value=33 Score=30.24 Aligned_cols=31 Identities=26% Similarity=0.373 Sum_probs=24.0
Q ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHHhhhhc
Q 024845 227 SRFRSQVSNIASEAKRERNALTKEVSKISNY 257 (261)
Q Consensus 227 ~~LRseVAs~AS~vK~qR~aL~k~l~KIs~~ 257 (261)
...+..+..+...+...|..+-+.|..|+.-
T Consensus 129 ~~~~~~l~~l~~~l~~~r~~l~~~l~~ifpI 159 (302)
T PF10186_consen 129 EERKQRLSQLQSQLARRRRQLIQELSEIFPI 159 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 3456677778888888899998888888654
No 20
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=80.28 E-value=26 Score=30.60 Aligned_cols=18 Identities=11% Similarity=0.111 Sum_probs=10.6
Q ss_pred cccchhHHHHHhhhhhcC
Q 024845 126 LKRPRHFLYYNTLRLFAS 143 (261)
Q Consensus 126 l~~PRrfL~r~TlgrF~S 143 (261)
+---++|+|....+.+..
T Consensus 24 y~ll~kf~~ppI~~iLe~ 41 (155)
T PRK06569 24 YIFVYKFITPKAEEIFNN 41 (155)
T ss_pred HHHHHHHhHHHHHHHHHH
Confidence 334567888666555443
No 21
>PRK14148 heat shock protein GrpE; Provisional
Probab=78.52 E-value=47 Score=29.94 Aligned_cols=99 Identities=14% Similarity=0.233 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH--HHHHHHHHhhHHHHhccCCchHHHHHHHHHhHhH
Q 024845 160 QSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINS--AYKIERQAAGLKDIVGELPRREASRFRSQVSNIA 237 (261)
Q Consensus 160 ~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr~ag~qiq~l~~s--~yk~E~~A~gL~d~Lr~LP~reA~~LRseVAs~A 237 (261)
..++.+..++..|++.+..-.+.+.|-..++-+..+-.++-... -|.+++-+..|++.+..|=+.-.. -..--...
T Consensus 40 ~e~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~rE~e~~~~~a~~~~~~~LLpV~DnlerAl~~--~~~~~~~~ 117 (195)
T PRK14148 40 EQLERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAERDVSNARKFGIEKFAKELLPVIDSIEQALKH--EVKLEEAI 117 (195)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhc--cccchhHH
Confidence 33444444455555544444555566666666665555555444 577889999999888877542111 00001122
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCC
Q 024845 238 SEAKRERNALTKEVSKISNYGIS 260 (261)
Q Consensus 238 S~vK~qR~aL~k~l~KIs~~GI~ 260 (261)
+-++.-+.++.+-+.-..++||.
T Consensus 118 ~l~~Gv~mi~k~l~~vL~k~Gv~ 140 (195)
T PRK14148 118 AMKEGIELTAKMLVDILKKNGVE 140 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCE
Confidence 33444455555555555667763
No 22
>PF09769 ApoO: Apolipoprotein O; InterPro: IPR019166 Apolipoproteins are proteins that binds to lipids. Members of this family promote cholesterol efflux from macrophage cells. They are present in various lipoprotein complexes, including HDL, LDL and VLDL. Apolipoprotein O is a 198 amino acids protein that contains a 23 amino acids long signal peptide. The apoprotein is secreted by a microsomal triglyceride transfer protein (MTTP)-dependent mechanism, probably as a VLDL-associated protein that is subsequently transferred to HDL. Apolipoprotein O is the first chondroitine sulphate chain containing apolipoprotein [].
Probab=77.27 E-value=6.2 Score=33.22 Aligned_cols=72 Identities=25% Similarity=0.269 Sum_probs=47.8
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhCh------hhhhHHHHHHHHhhccc---chhHHH
Q 024845 64 LSQTRLTASVHFQQTLDYLQDVKSEYAAYEDAAVGKVKEGIHVAASHP------FITAGGAIGLGSFLLKR---PRHFLY 134 (261)
Q Consensus 64 ~s~~~~ts~~h~~~~~~~l~~~~sey~~yEd~~f~kiKegv~~A~~hP------~~a~g~a~~ag~lll~~---PRrfL~ 134 (261)
++.+|..-..++..+++.++.+++.|...|+.+=..++. .+..| .+.+|+++.+|++|-|+ ++||+|
T Consensus 47 i~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----L~~~~~~llP~~~~I~vaglaGsIlar~r~~~~R~~~ 122 (158)
T PF09769_consen 47 IRKAREFLQPYYSWAQDELNTVKSKYYNAERSVTSTIAS----LHPPPEELLPGLGYIGVAGLAGSILARRRGIFKRFLY 122 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hcCCCcccCcceeeeehhhhheeeeeccCcchhhhHH
Confidence 344666777788888889999999998888866555543 33333 24567777788887763 455555
Q ss_pred HHhhh
Q 024845 135 YNTLR 139 (261)
Q Consensus 135 r~Tlg 139 (261)
=-.+|
T Consensus 123 P~~~g 127 (158)
T PF09769_consen 123 PLAFG 127 (158)
T ss_pred HHHHH
Confidence 44443
No 23
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=76.66 E-value=46 Score=28.20 Aligned_cols=70 Identities=17% Similarity=0.225 Sum_probs=63.3
Q ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 024845 139 RLFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIE 208 (261)
Q Consensus 139 grF~SEEall~~Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr~ag~qiq~l~~s~yk~E 208 (261)
+.....+..++..+.+..++...+..+.++..++.+-.....++++.-..++......+..+.+..-+..
T Consensus 81 ~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 81 GELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5889999999999999999999999999999999888888888888888999888888888888888877
No 24
>PRK04654 sec-independent translocase; Provisional
Probab=75.59 E-value=30 Score=32.06 Aligned_cols=81 Identities=11% Similarity=0.178 Sum_probs=43.5
Q ss_pred HHhhcccchhHH-HHHhhhhhcCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 024845 122 GSFLLKRPRHFL-YYNTLRLFASE-ESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQG 199 (261)
Q Consensus 122 g~lll~~PRrfL-~r~TlgrF~SE-Eall~~Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr~ag~qiq~ 199 (261)
..|++-||-|+= +=+++|++.-+ -..++.....+.+= ..++.++.+.+++.+.+..++.+++.+...|++++..+++
T Consensus 15 VALlV~GPerLPe~aRtlGk~irk~R~~~~~vk~El~~E-l~~~ELrk~l~~~~~~i~~~~~~lk~~~~el~q~a~~~~~ 93 (214)
T PRK04654 15 VALVVLGPERLPKAARFAGLWVRRARMQWDSVKQELERE-LEAEELKRSLQDVQASLREAEDQLRNTQQQVEQGARALHD 93 (214)
T ss_pred HHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 345556777762 33344433221 02344444443322 1234556666666666777777777777777777776664
Q ss_pred HHHH
Q 024845 200 VINS 203 (261)
Q Consensus 200 l~~s 203 (261)
....
T Consensus 94 ~~~~ 97 (214)
T PRK04654 94 DVSR 97 (214)
T ss_pred hhhc
Confidence 4333
No 25
>PRK14139 heat shock protein GrpE; Provisional
Probab=75.19 E-value=55 Score=29.27 Aligned_cols=102 Identities=16% Similarity=0.140 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhccCCchHHHHH
Q 024845 150 RADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIVGELPRREASRF 229 (261)
Q Consensus 150 ~Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr~ag~qiq~l~~s~yk~E~~A~gL~d~Lr~LP~reA~~L 229 (261)
.|+..+..|...++.++.|...|.|+..-+..||..=|-.+.....++ .-|..++-+..|++.+..|=+.-.. .
T Consensus 29 ~~~~e~~~l~~~l~~le~e~~elkd~~lR~~AefeN~rKR~~kE~e~~-----~~~a~~~~~~~LLpv~DnLerAl~~-~ 102 (185)
T PRK14139 29 AAEDAAPALEAELAEAEAKAAELQDSFLRAKAETENVRRRAQEDVAKA-----HKFAIESFAESLLPVKDSLEAALAD-E 102 (185)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHhhHHhHHHHHHhc-c
Confidence 455666777777777777777777766665555554332222222222 2467788888898888877543211 0
Q ss_pred HHHHhHhHHHHHHHHHHHHHHHHhhhhcCCC
Q 024845 230 RSQVSNIASEAKRERNALTKEVSKISNYGIS 260 (261)
Q Consensus 230 RseVAs~AS~vK~qR~aL~k~l~KIs~~GI~ 260 (261)
.. .+.+-++.-+.++.+-+.-..++||.
T Consensus 103 ~~---~~~~l~~Gv~mi~k~l~~vL~k~Gv~ 130 (185)
T PRK14139 103 SG---DLEKLREGVELTLKQLTSAFEKGRVV 130 (185)
T ss_pred cc---hHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 11 22334455566666666667778874
No 26
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=74.90 E-value=48 Score=27.62 Aligned_cols=56 Identities=18% Similarity=0.215 Sum_probs=39.3
Q ss_pred HHHHhhcccchhHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024845 120 GLGSFLLKRPRHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKV 175 (261)
Q Consensus 120 ~ag~lll~~PRrfL~r~TlgrF~SEEall~~Ae~~v~eLr~svdl~k~Es~KL~er 175 (261)
+..++|+---++|||.-..+-+..=+..+.+.-...++++..++.+++|.+..+..
T Consensus 15 i~Flil~~~l~kfl~kPi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~ 70 (141)
T PRK08476 15 VVFLLLIVILNSWLYKPLLKFMDNRNASIKNDLEKVKTNSSDVSEIEHEIETILKN 70 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555567899988888887777777777777777777777777776665443
No 27
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=73.45 E-value=69 Score=28.73 Aligned_cols=66 Identities=20% Similarity=0.283 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024845 145 ESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQ 210 (261)
Q Consensus 145 Eall~~Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr~ag~qiq~l~~s~yk~E~~ 210 (261)
...+..++.++.+....+..+.+++.+..+|+..+|.....=-..|+..|..|++|--+.-+....
T Consensus 105 ~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~r 170 (237)
T PF00261_consen 105 KRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASER 170 (237)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHH
Confidence 345677888888888888889999999999999999998888888888888888876665444333
No 28
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=73.05 E-value=78 Score=30.74 Aligned_cols=75 Identities=13% Similarity=0.138 Sum_probs=58.6
Q ss_pred HHHhhcccchhHHHHHhhhhhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 024845 121 LGSFLLKRPRHFLYYNTLRLFAS-EESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGK 195 (261)
Q Consensus 121 ag~lll~~PRrfL~r~TlgrF~S-EEall~~Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr~ag~ 195 (261)
..+=+.+.-|+|+..+.||-=++ -|+.-+.-+..+....++++.+..|..++.++...-..|+-+-.+.|.++--
T Consensus 96 i~y~~y~~~K~YV~P~~l~~~~~k~e~~k~~Ld~~~~~~~~~~~~l~~~va~v~q~~~~qq~Els~~L~~l~~~~~ 171 (300)
T KOG2629|consen 96 IAYAAYRFVKSYVLPRFLGESKDKLEADKRQLDDQFDKAAKSLNALMDEVAQVSQLLATQQSELSRALASLKNTLV 171 (300)
T ss_pred HHHHHHHHHHHHHHHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345566788888777777666 4556666677788888889999999999999999999999999888888844
No 29
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=72.49 E-value=61 Score=27.75 Aligned_cols=77 Identities=10% Similarity=-0.126 Sum_probs=43.2
Q ss_pred HHHhhhhhHHHhhhChhhh---hHHHHHHHHhhcccchhHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024845 96 AVGKVKEGIHVAASHPFIT---AGGAIGLGSFLLKRPRHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKL 172 (261)
Q Consensus 96 ~f~kiKegv~~A~~hP~~a---~g~a~~ag~lll~~PRrfL~r~TlgrF~SEEall~~Ae~~v~eLr~svdl~k~Es~KL 172 (261)
||--+--++-.|.+|+++- .-..++..++++--=..|||.-..+-+..=+..+..--.+.++.+..++.+..|.+..
T Consensus 3 ~~~~~~~~~a~~~~~~~~~~~~~~~~~inflil~~lL~~fl~kPi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~ 82 (167)
T PRK08475 3 FFLLLLGFYAFAASLGATEQYDIIERTINFLIFVGILWYFAAKPLKNFYKSRINKISKRLEEIQEKLKESKEKKEDALKK 82 (167)
T ss_pred HHHHHHHHHHHHcccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445566788877744 2223344444555556699987777776655555555555555555555554444443
No 30
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=72.46 E-value=80 Score=29.09 Aligned_cols=11 Identities=9% Similarity=0.208 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 024845 190 LRQAGKQIQGV 200 (261)
Q Consensus 190 Lr~ag~qiq~l 200 (261)
+.++..+|..+
T Consensus 212 l~~~~~~l~~~ 222 (423)
T TIGR01843 212 LGRLEAELEVL 222 (423)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 31
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=71.76 E-value=83 Score=28.98 Aligned_cols=32 Identities=28% Similarity=0.370 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024845 154 KVKQLRQSIDRLKAESEKLEKVALVAEDELIR 185 (261)
Q Consensus 154 ~v~eLr~svdl~k~Es~KL~eraa~AE~E~~r 185 (261)
+++.++..++.++.+.+.+......+++++.+
T Consensus 152 ~i~~~~~~i~~~~~~l~~~~~~l~~~~~~~~~ 183 (423)
T TIGR01843 152 QIKQLEAELAGLQAQLQALRQQLEVISEELEA 183 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444334344444444444433
No 32
>PRK14154 heat shock protein GrpE; Provisional
Probab=71.67 E-value=57 Score=29.82 Aligned_cols=96 Identities=13% Similarity=0.182 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH--HHHHHHHHhhHHHHhccCCchHHHHHHHHHh
Q 024845 157 QLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINS--AYKIERQAAGLKDIVGELPRREASRFRSQVS 234 (261)
Q Consensus 157 eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr~ag~qiq~l~~s--~yk~E~~A~gL~d~Lr~LP~reA~~LRseVA 234 (261)
.|...++.++++...|.++. +|=..++-+..+-.++.... -|.+++-+..|++.+..|=+.-... -.+-.
T Consensus 56 ~l~~el~~le~e~~elkd~~-------lRl~ADfeNyRKR~~kE~e~~~~~a~e~~~~~LLpVlDnLeRAL~~~-~~~~~ 127 (208)
T PRK14154 56 KLEGQLTRMERKVDEYKTQY-------LRAQAEMDNLRKRIEREKADIIKFGSKQLITDLLPVADSLIHGLESP-ASEDP 127 (208)
T ss_pred hHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcc-cccch
Confidence 33344444444444444444 44444444444444443333 4678888888888888775532110 01111
Q ss_pred HhHHHHHHHHHHHHHHHHhhhhcCCC
Q 024845 235 NIASEAKRERNALTKEVSKISNYGIS 260 (261)
Q Consensus 235 s~AS~vK~qR~aL~k~l~KIs~~GI~ 260 (261)
...+-+..-..++.+-+.-..++||.
T Consensus 128 ~~~~l~eGvemi~k~l~~vL~k~GVe 153 (208)
T PRK14154 128 QVKSMRDGMSLTLDLLHNTLAKHGVQ 153 (208)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHCCCE
Confidence 12233344445555555555667764
No 33
>PRK14162 heat shock protein GrpE; Provisional
Probab=71.17 E-value=79 Score=28.49 Aligned_cols=98 Identities=18% Similarity=0.224 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH--HHHHHHHHHhhHHHHhccCCchHHHHHHH
Q 024845 154 KVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVIN--SAYKIERQAAGLKDIVGELPRREASRFRS 231 (261)
Q Consensus 154 ~v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr~ag~qiq~l~~--s~yk~E~~A~gL~d~Lr~LP~reA~~LRs 231 (261)
.++.|...++.++.+...|.++..-+..||. +..+-.++-.. .-|.+++-+..|++.+..|=+. +..-.
T Consensus 40 e~~~l~~~l~~l~~e~~elkd~~lR~~AEfe-------N~rkR~~kE~e~~~~~a~~~~~~~LLpV~DnLerA--l~~~~ 110 (194)
T PRK14162 40 PVEDLEKEIADLKAKNKDLEDKYLRSQAEIQ-------NMQNRYAKERAQLIKYESQSLAKDVLPAMDNLERA--LAVKA 110 (194)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHH--Hhccc
Confidence 4455555566666666655555544444444 44333333332 2567888999999888887443 21111
Q ss_pred HHhHhHHHHHHHHHHHHHHHHhhhhcCCC
Q 024845 232 QVSNIASEAKRERNALTKEVSKISNYGIS 260 (261)
Q Consensus 232 eVAs~AS~vK~qR~aL~k~l~KIs~~GI~ 260 (261)
+-..+.+-++.-..++.+-.+-+.++||.
T Consensus 111 ~~~~~~~l~~Gvemi~k~l~~vL~~~GV~ 139 (194)
T PRK14162 111 DDEAAKQLKKGVQMTLDHLVKALKDHGVT 139 (194)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHCCCE
Confidence 11112233444455555555555667773
No 34
>PRK14163 heat shock protein GrpE; Provisional
Probab=71.14 E-value=69 Score=29.44 Aligned_cols=92 Identities=9% Similarity=0.135 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhccCCchHHHHHHHHHh
Q 024845 155 VKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIVGELPRREASRFRSQVS 234 (261)
Q Consensus 155 v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr~ag~qiq~l~~s~yk~E~~A~gL~d~Lr~LP~reA~~LRseVA 234 (261)
..+|+..++.++.|+..|.|+..-+..||..=|-. +.++.... .-|..++-+..|+..|..|=+.-.. .
T Consensus 42 ~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~rkR---~~kE~e~~--~~~a~~~~~~~LLpVlDnLerAl~~------~ 110 (214)
T PRK14163 42 TAGLTAQLDQVRTALGERTADLQRLQAEYQNYRRR---VERDRVTV--KEIAVANLLSELLPVLDDVGRAREH------G 110 (214)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH--HHHHHHHHHHHHhhhHhHHHHHHhc------h
Confidence 56777778888888888777666555555543322 22222222 2577899999999999888654221 1
Q ss_pred HhHHHHHHHHHHHHHHHHhhhhcCCC
Q 024845 235 NIASEAKRERNALTKEVSKISNYGIS 260 (261)
Q Consensus 235 s~AS~vK~qR~aL~k~l~KIs~~GI~ 260 (261)
.+ +..-+.++.+-+.-+.++||.
T Consensus 111 ~l---~~Gv~mi~k~l~~~L~k~Gv~ 133 (214)
T PRK14163 111 EL---VGGFKSVAESLETTVAKLGLQ 133 (214)
T ss_pred hH---HHHHHHHHHHHHHHHHHCCCE
Confidence 22 333445555555555677774
No 35
>PRK14145 heat shock protein GrpE; Provisional
Probab=69.18 E-value=89 Score=28.29 Aligned_cols=94 Identities=16% Similarity=0.159 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH--HHHHHHHHhhHHHHhccCCchHHHHHHHHHhHhHHH
Q 024845 162 IDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINS--AYKIERQAAGLKDIVGELPRREASRFRSQVSNIASE 239 (261)
Q Consensus 162 vdl~k~Es~KL~eraa~AE~E~~rGrtkLr~ag~qiq~l~~s--~yk~E~~A~gL~d~Lr~LP~reA~~LRseVAs~AS~ 239 (261)
++.++.++.+|++.+.-....++|-..++-+..+-.++-... -|.+++-+..|++.+..|=+.-+. -....++
T Consensus 47 ~~~l~~~l~~le~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~~a~e~~~~~LLpV~DnLerAl~~--~~~~~~l--- 121 (196)
T PRK14145 47 IEELKQKLQQKEVEAQEYLDIAQRLKAEFENYRKRTEKEKSEMVEYGKEQVILELLPVMDNFERALAS--SGDYNSL--- 121 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhc--cccHHHH---
Confidence 444455555555555555556666666666666655555444 577899999999988888654322 1222222
Q ss_pred HHHHHHHHHHHHHhhhhcCCC
Q 024845 240 AKRERNALTKEVSKISNYGIS 260 (261)
Q Consensus 240 vK~qR~aL~k~l~KIs~~GI~ 260 (261)
.+.-..++.+-+.-..++||.
T Consensus 122 ~~Gv~mi~k~l~~vL~k~GVe 142 (196)
T PRK14145 122 KEGIELIYRQFKKILDKFGVK 142 (196)
T ss_pred HHHHHHHHHHHHHHHHHCCCE
Confidence 233444455555555667763
No 36
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=68.54 E-value=71 Score=31.68 Aligned_cols=107 Identities=17% Similarity=0.099 Sum_probs=56.3
Q ss_pred hhhHHHHHHHHhhcc-cchhHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 024845 113 ITAGGAIGLGSFLLK-RPRHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLR 191 (261)
Q Consensus 113 ~a~g~a~~ag~lll~-~PRrfL~r~TlgrF~SEEall~~Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr 191 (261)
+.+.|++.+..+++| +++.-|-++.-.++..=...+...-..-..-......+-++...+++....+.-|-.+++.
T Consensus 137 iGi~~a~~v~~l~~P~~~~~~l~~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~~e~~~~~~--- 213 (650)
T PF04632_consen 137 IGILCATLVSMLFFPQRARRQLRRRLAQRLADLARWLAALLDGDPDPAAERRRLARDIAALESLLSHARYESPRLRR--- 213 (650)
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchHHHHHHHHHHHHHHHHhhccccCchhHH---
Confidence 344566667788888 7777777777777766655555443222221113444555555566655555555544333
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHhccCCc
Q 024845 192 QAGKQIQGVINSAYKIERQAAGLKDIVGELPR 223 (261)
Q Consensus 192 ~ag~qiq~l~~s~yk~E~~A~gL~d~Lr~LP~ 223 (261)
....++.+..++...=.....+-+.+..+|.
T Consensus 214 -~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~ 244 (650)
T PF04632_consen 214 -RRRRLRALQARLLRLLALLRSLARRLAALPD 244 (650)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 3333444444444444444444444444444
No 37
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=68.04 E-value=62 Score=26.04 Aligned_cols=18 Identities=33% Similarity=0.099 Sum_probs=10.0
Q ss_pred ChhhhhHHHHHHHHhhcc
Q 024845 110 HPFITAGGAIGLGSFLLK 127 (261)
Q Consensus 110 hP~~a~g~a~~ag~lll~ 127 (261)
=|.+.++++++.+++.+.
T Consensus 9 w~ii~a~~~~~~~~~~~~ 26 (106)
T PF10805_consen 9 WGIIWAVFGIAGGIFWLW 26 (106)
T ss_pred cHHHHHHHHHHHHHHHHH
Confidence 355666666555555443
No 38
>PRK14153 heat shock protein GrpE; Provisional
Probab=67.68 E-value=95 Score=28.03 Aligned_cols=100 Identities=13% Similarity=0.217 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH--HHHHHHHHhhHHHHhccCCchHHHHH
Q 024845 152 DTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINS--AYKIERQAAGLKDIVGELPRREASRF 229 (261)
Q Consensus 152 e~~v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr~ag~qiq~l~~s--~yk~E~~A~gL~d~Lr~LP~reA~~L 229 (261)
+.+++.+...++.++.++..|. +.|+|-..++-+..+-.++-... -|.+++-+..|++.+..|=+. +..
T Consensus 32 ~~~~~~~~~ei~~l~~e~~elk-------d~~lR~~AEfeN~rKR~~kE~e~~~~~a~~~~~~~LLpv~DnLerA--l~~ 102 (194)
T PRK14153 32 EPEDSTADSETEKCREEIESLK-------EQLFRLAAEFDNFRKRTAREMEENRKFVLEQVLLDLLEVTDNFERA--LES 102 (194)
T ss_pred hhhcccchHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHH--Hhc
Confidence 3345555555555555555554 44555555555555544444333 577889999999888887542 111
Q ss_pred HHHHhHhHHHHHHHHHHHHHHHHhhhhcCCC
Q 024845 230 RSQVSNIASEAKRERNALTKEVSKISNYGIS 260 (261)
Q Consensus 230 RseVAs~AS~vK~qR~aL~k~l~KIs~~GI~ 260 (261)
-.+-..+.+-+..-..++.+-+.-+.++||.
T Consensus 103 ~~~~~~~~~l~~Gvemi~k~~~~vL~k~Gv~ 133 (194)
T PRK14153 103 ARTAEDMNSIVEGIEMVSKQFFSILEKYGLE 133 (194)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHCCCe
Confidence 1111112333344455555555556677774
No 39
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=67.09 E-value=76 Score=26.66 Aligned_cols=60 Identities=15% Similarity=0.090 Sum_probs=38.2
Q ss_pred hhHHHHHHHHhhcccchhHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024845 114 TAGGAIGLGSFLLKRPRHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKLE 173 (261)
Q Consensus 114 a~g~a~~ag~lll~~PRrfL~r~TlgrF~SEEall~~Ae~~v~eLr~svdl~k~Es~KL~ 173 (261)
+...-++..++|+--=++|||.-..+-+..=+..+...-.+.++++..++.+..|.++.+
T Consensus 24 t~~~~~inFliL~~lL~k~l~~Pi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L 83 (156)
T CHL00118 24 TLPLMALQFLLLMVLLNIILYKPLLKVLDERKEYIRKNLTKASEILAKANELTKQYEQEL 83 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555555689999887777766666666666666666666666666655443
No 40
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=66.59 E-value=55 Score=24.88 Aligned_cols=62 Identities=11% Similarity=0.147 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 024845 145 ESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYK 206 (261)
Q Consensus 145 Eall~~Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr~ag~qiq~l~~s~yk 206 (261)
...++...+-++.++..+|.+..|...+.+..-.--++....-.++...-..+..+-.++..
T Consensus 25 ~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~~~g~~v~~ 86 (90)
T PF06103_consen 25 KKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAVADLGESVSE 86 (90)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 34578888889999999999999999988887777777766666655555555555444433
No 41
>PRK04863 mukB cell division protein MukB; Provisional
Probab=65.91 E-value=2.6e+02 Score=32.41 Aligned_cols=156 Identities=10% Similarity=0.109 Sum_probs=71.8
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH----HHHhhhhhHHHhh-------hC--------hhhhhHHHHHH
Q 024845 61 RSRLSQTRLTASVHFQQTLDYLQDVKSEYAAYEDA----AVGKVKEGIHVAA-------SH--------PFITAGGAIGL 121 (261)
Q Consensus 61 ~sr~s~~~~ts~~h~~~~~~~l~~~~sey~~yEd~----~f~kiKegv~~A~-------~h--------P~~a~g~a~~a 121 (261)
|++|-+|-.|+ .|...+..+.+|..+|-==|+- +|..+.+.+..-+ .+ -.|+.+...++
T Consensus 194 R~kF~kLf~ta--iy~~i~~~i~~fl~~yll~e~~~v~~~i~~m~~~l~~~r~t~~~~~~tq~drdlFk~lI~~~~~~~a 271 (1486)
T PRK04863 194 RSKFYRLIEAS--LYGGISSAITRSLRDYLLPENSGVRKAFQDMEAALRENRMTLEAIRVTQSDRDLFKHLITESTNYVA 271 (1486)
T ss_pred HHHHHHHHHHH--HHhhHHHhHHHHHHHHcCCCChhhhHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHhhhhhhhhH
Confidence 45565555544 4445555555555555333322 2444444333211 11 24555554444
Q ss_pred H-HhhcccchhHHHHHhhh----------hhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 024845 122 G-SFLLKRPRHFLYYNTLR----------LFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKL 190 (261)
Q Consensus 122 g-~lll~~PRrfL~r~Tlg----------rF~SEEall~~Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtkL 190 (261)
+ |+.=+.-||-|+--..| .+...+.-+.+.+..++++...++.++.+.++..+-....+ ++.+-..++
T Consensus 272 ad~~r~~eERR~liEEAag~r~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~e-e~lr~q~ei 350 (1486)
T PRK04863 272 ADYMRHANERRVHLEEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQ-TALRQQEKI 350 (1486)
T ss_pred HHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 4 44445557777755433 33334444444444445555555555555555444433333 233334444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHhc
Q 024845 191 RQAGKQIQGVINSAYKIERQAAGLKDIVG 219 (261)
Q Consensus 191 r~ag~qiq~l~~s~yk~E~~A~gL~d~Lr 219 (261)
.....++..+-...-..+.....+.+.+.
T Consensus 351 ~~l~~~LeELee~Lee~eeeLeeleeele 379 (1486)
T PRK04863 351 ERYQADLEELEERLEEQNEVVEEADEQQE 379 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555554444444444444443333
No 42
>PRK14143 heat shock protein GrpE; Provisional
Probab=65.14 E-value=1.2e+02 Score=28.19 Aligned_cols=66 Identities=17% Similarity=0.237 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhccCCch
Q 024845 154 KVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIVGELPRR 224 (261)
Q Consensus 154 ~v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr~ag~qiq~l~~s~yk~E~~A~gL~d~Lr~LP~r 224 (261)
.+..|...++.+++|.+.|.++..-+-.||..=|-. +.+++..+ .-|.+++-+..|+..+..|=+.
T Consensus 68 ~~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR---~~kE~e~~--~~~a~~~~~~~lLpV~DnLerA 133 (238)
T PRK14143 68 RLAQLEQELESLKQELEELNSQYMRIAADFDNFRKR---TSREQEDL--RLQLKCNTLSEILPVVDNFERA 133 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH--HHHHHHHHHHHHHHHHhHHHHH
Confidence 455666666667777776666654444444433221 22233322 2477888999999888877553
No 43
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=64.76 E-value=84 Score=26.35 Aligned_cols=54 Identities=22% Similarity=0.251 Sum_probs=38.5
Q ss_pred HHHHHhhcccchhHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024845 119 IGLGSFLLKRPRHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKL 172 (261)
Q Consensus 119 ~~ag~lll~~PRrfL~r~TlgrF~SEEall~~Ae~~v~eLr~svdl~k~Es~KL 172 (261)
++..++|+--=.+|||....+-+..=+..+...-...++.+..++.+..|.++.
T Consensus 15 ~i~Flil~~ll~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~ 68 (164)
T PRK14471 15 TILFLILLLLLAKFAWKPILGAVKEREDSIKNALASAEEARKEMQNLQADNERL 68 (164)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445578999999999888777777777777777777777776666653
No 44
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=64.47 E-value=1.7e+02 Score=29.91 Aligned_cols=96 Identities=20% Similarity=0.182 Sum_probs=48.8
Q ss_pred HHHHHHH---HhhhhhHHHhh---hChhhhhHHHHHHHHhhcccchhHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHH
Q 024845 91 AYEDAAV---GKVKEGIHVAA---SHPFITAGGAIGLGSFLLKRPRHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDR 164 (261)
Q Consensus 91 ~yEd~~f---~kiKegv~~A~---~hP~~a~g~a~~ag~lll~~PRrfL~r~TlgrF~SEEall~~Ae~~v~eLr~svdl 164 (261)
.+.+.|| .+|.+ +|. ....+..++...+|+=++-+-+.-|=. ..++..++. ..+....++++|...++.
T Consensus 146 ~~~~~FfFDGE~I~~---la~~~~~~~~l~~Ai~~LlGl~~~~~L~~dl~~-~~~~~~~~~-~~~~~~~~~~~le~el~~ 220 (650)
T TIGR03185 146 ELADLFFFDGEKIEA---LANPDRLASLLKEAIEVLLGLDLIDRLAGDLTN-VLRRRKKSE-LPSSILSEIEALEAELKE 220 (650)
T ss_pred hHHHHhcccHHHHHH---HhccccchHHHHHHHHHHhCcHHHHHHHHHHHH-HHHHHHhcc-cchHHHHHHHHHHHHHHH
Confidence 4556666 47754 333 233456666666776665544443322 123333433 245555666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 024845 165 LKAESEKLEKVALVAEDELIRGRTKLR 191 (261)
Q Consensus 165 ~k~Es~KL~eraa~AE~E~~rGrtkLr 191 (261)
+..+.+.+.+.....+.+..+-..++.
T Consensus 221 l~~~~e~l~~~i~~l~~ele~a~~~l~ 247 (650)
T TIGR03185 221 QSEKYEDLAQEIAHLRNELEEAQRSLE 247 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555444444444444433333
No 45
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=63.63 E-value=1.2e+02 Score=27.59 Aligned_cols=108 Identities=20% Similarity=0.229 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhccCCc---
Q 024845 147 LLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIVGELPR--- 223 (261)
Q Consensus 147 ll~~Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr~ag~qiq~l~~s~yk~E~~A~gL~d~Lr~LP~--- 223 (261)
.+..+...-..|...++.++.|...+..+....-..-..=...+..-.+++......--..|.+..+|.+.|.-+-.
T Consensus 62 ~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~he 141 (312)
T PF00038_consen 62 QIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHE 141 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhh
Confidence 33444444444444555555555555444444433333333444444566666666667788888888887765543
Q ss_pred hHHHHHHHHHh-HhHHHHH-HHHHHHHHHHHhh
Q 024845 224 REASRFRSQVS-NIASEAK-RERNALTKEVSKI 254 (261)
Q Consensus 224 reA~~LRseVA-s~AS~vK-~qR~aL~k~l~KI 254 (261)
.+-..||++++ +.+-+++ ....-|...|..|
T Consensus 142 eEi~~L~~~~~~~~~~e~~~~~~~dL~~~L~ei 174 (312)
T PF00038_consen 142 EEIEELREQIQSSVTVEVDQFRSSDLSAALREI 174 (312)
T ss_dssp HHHHTTSTT----------------HHHHHHHH
T ss_pred hhhhhhhhccccccceeecccccccchhhhhhH
Confidence 44556666663 3333433 2233444444444
No 46
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=62.60 E-value=2e+02 Score=30.00 Aligned_cols=17 Identities=12% Similarity=0.247 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 024845 74 HFQQTLDYLQDVKSEYA 90 (261)
Q Consensus 74 h~~~~~~~l~~~~sey~ 90 (261)
+.....|.+..+..+..
T Consensus 180 nL~r~~d~l~el~~ql~ 196 (1179)
T TIGR02168 180 KLERTRENLDRLEDILN 196 (1179)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444444444433
No 47
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=62.53 E-value=87 Score=25.76 Aligned_cols=98 Identities=18% Similarity=0.264 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhccCCchHHH
Q 024845 148 LSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIVGELPRREAS 227 (261)
Q Consensus 148 l~~Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr~ag~qiq~l~~s~yk~E~~A~gL~d~Lr~LP~reA~ 227 (261)
+.+.......+...+..++.+++...+.+..|+..|-+-..+=-.+...|+.+=...-........|... +-
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~--------~~ 83 (132)
T PF07926_consen 12 LQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAE--------AE 83 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HH
Confidence 4556677778888888999999999999999999999888776666666666655555544444444332 22
Q ss_pred HHHHHHhHhHHHHHHHHHHHHHHHHh
Q 024845 228 RFRSQVSNIASEAKRERNALTKEVSK 253 (261)
Q Consensus 228 ~LRseVAs~AS~vK~qR~aL~k~l~K 253 (261)
..+..+...-.....+|..|.+.|..
T Consensus 84 ~a~~~l~~~e~sw~~qk~~le~e~~~ 109 (132)
T PF07926_consen 84 SAKAELEESEASWEEQKEQLEKELSE 109 (132)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 23333344444445556666665543
No 48
>PRK14158 heat shock protein GrpE; Provisional
Probab=62.20 E-value=1.2e+02 Score=27.33 Aligned_cols=97 Identities=18% Similarity=0.255 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH--HHHHHHHHhhHHHHhccCCchHHHHHHH
Q 024845 154 KVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINS--AYKIERQAAGLKDIVGELPRREASRFRS 231 (261)
Q Consensus 154 ~v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr~ag~qiq~l~~s--~yk~E~~A~gL~d~Lr~LP~reA~~LRs 231 (261)
.+..|...++.++.|...|.++ ++|-..++-+..+-.++-... -|.+++-+..|++.+..|=+.=. .-.
T Consensus 41 ~~~~le~~l~~le~e~~el~d~-------~lR~~AefeN~RkR~~kE~e~~~~~a~~~~~~~lLpV~DnLerAl~--~~~ 111 (194)
T PRK14158 41 RIKELEEALAAKEAEAAANWDK-------YLRERADLENYRKRVQKEKEELLKYGNESLILEILPAVDNMERALD--HAD 111 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHh--ccC
Confidence 3444444444455555555444 455555555554444444333 57788999999988887755321 100
Q ss_pred HHhHhHHHHHHHHHHHHHHHHhhhhcCCC
Q 024845 232 QVSNIASEAKRERNALTKEVSKISNYGIS 260 (261)
Q Consensus 232 eVAs~AS~vK~qR~aL~k~l~KIs~~GI~ 260 (261)
-..+.+-+..-..++.+-+.-..++||.
T Consensus 112 -~~~~~~i~~Gv~mi~k~l~~vLek~Gv~ 139 (194)
T PRK14158 112 -EESMSAIIEGIRMTLSMLLSTLKKFGVT 139 (194)
T ss_pred -cchHHHHHHHHHHHHHHHHHHHHHCCCE
Confidence 0112233344445555555555667773
No 49
>PRK14146 heat shock protein GrpE; Provisional
Probab=61.80 E-value=1e+02 Score=28.09 Aligned_cols=93 Identities=14% Similarity=0.147 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH--HHHHHHHHhhHHHHhccCCchHHHHHHHHHhHhHHHHHHH
Q 024845 166 KAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINS--AYKIERQAAGLKDIVGELPRREASRFRSQVSNIASEAKRE 243 (261)
Q Consensus 166 k~Es~KL~eraa~AE~E~~rGrtkLr~ag~qiq~l~~s--~yk~E~~A~gL~d~Lr~LP~reA~~LRseVAs~AS~vK~q 243 (261)
+.++..|.+.+.--...+.|-..++-+..+...+-... -|.+++-+.+|+..+..|=+.-. .-.+-....+-++.-
T Consensus 60 ~~~l~~l~~e~~el~d~~lR~~AdfeN~rkR~~kE~e~~~~~a~e~~~~~lLpv~DnlerAl~--~~~~~~~~~~l~~Gv 137 (215)
T PRK14146 60 QKELDNAKKEIESLKDSWARERAEFQNFKRRSAQEFVSIRKEAVKSLVSGFLNPIDNLERVGA--TQNQSEELKPFVEGV 137 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHh--cccccchhhHHHHHH
Confidence 34444444444444555566666666665555554443 57889999999999888865321 111101122233344
Q ss_pred HHHHHHHHHhhhhcCCC
Q 024845 244 RNALTKEVSKISNYGIS 260 (261)
Q Consensus 244 R~aL~k~l~KIs~~GI~ 260 (261)
+.++.+-..-+.++||.
T Consensus 138 ~mi~k~l~~~L~k~Gv~ 154 (215)
T PRK14146 138 KMILKEFYSVLEKSNVI 154 (215)
T ss_pred HHHHHHHHHHHHHCcCe
Confidence 44555545555567764
No 50
>PRK14151 heat shock protein GrpE; Provisional
Probab=61.79 E-value=1.1e+02 Score=26.92 Aligned_cols=98 Identities=13% Similarity=0.200 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH--HHHHHHHHhhHHHHhccCCchHHHHHHHH
Q 024845 155 VKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINS--AYKIERQAAGLKDIVGELPRREASRFRSQ 232 (261)
Q Consensus 155 v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr~ag~qiq~l~~s--~yk~E~~A~gL~d~Lr~LP~reA~~LRse 232 (261)
+..|...++.++.|+..+.++. .|-..++-+-.+..++-... -|.+++-+..|++.+..|=+.-.. ...+
T Consensus 22 ~~~l~~~i~~le~e~~el~d~~-------lR~~Ae~eN~rkR~~kE~e~~~~~a~~~~~~~LLpv~DnlerAl~~-~~~~ 93 (176)
T PRK14151 22 GDDLTARVQELEEQLAAAKDQS-------LRAAADLQNVRRRAEQDVEKAHKFALEKFAGDLLPVVDSLERGLEL-SSAD 93 (176)
T ss_pred hhhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhc-cccc
Confidence 4455555666666666665554 44444444444444444333 577888899998888877553211 1111
Q ss_pred HhHhHHHHHHHHHHHHHHHHhhhhcCCC
Q 024845 233 VSNIASEAKRERNALTKEVSKISNYGIS 260 (261)
Q Consensus 233 VAs~AS~vK~qR~aL~k~l~KIs~~GI~ 260 (261)
-..+.+-++.-..++.+-+.-..++||.
T Consensus 94 ~~~~~~~~~Gv~mi~k~l~~~L~k~Gv~ 121 (176)
T PRK14151 94 DEAIKPMREGVELTLKMFQDTLKRYQLE 121 (176)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHCCCE
Confidence 1122333444445555555555677774
No 51
>PRK14156 heat shock protein GrpE; Provisional
Probab=61.43 E-value=97 Score=27.57 Aligned_cols=88 Identities=14% Similarity=0.180 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH--HHHHHHHHhhHHHHhccCCchHHHHHHHHHhHhHHHHHHHHH
Q 024845 168 ESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINS--AYKIERQAAGLKDIVGELPRREASRFRSQVSNIASEAKRERN 245 (261)
Q Consensus 168 Es~KL~eraa~AE~E~~rGrtkLr~ag~qiq~l~~s--~yk~E~~A~gL~d~Lr~LP~reA~~LRseVAs~AS~vK~qR~ 245 (261)
+++.|++.+..-...+.|-..++-+-.+-.++-... -|..++-+..|+..+..|=+.-. ......++ .+.=+.
T Consensus 35 ~l~~l~~e~~elkd~~lR~~AEfeN~rKR~~rE~e~~~~~a~~~~~~~LLpVlDnLerAl~--~~~~~~~l---~~Gv~m 109 (177)
T PRK14156 35 ELELANERADEFENKYLRAHAEMQNIQRRANEERQQLQRYRSQDLAKAILPSLDNLERALA--VEGLTDDV---KKGLEM 109 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHh--CcccchhH---HHHHHH
Confidence 334444444444455555555555555555555544 67889999999998888855321 11111122 334455
Q ss_pred HHHHHHHhhhhcCCC
Q 024845 246 ALTKEVSKISNYGIS 260 (261)
Q Consensus 246 aL~k~l~KIs~~GI~ 260 (261)
++++-+.-..++||.
T Consensus 110 i~k~l~~~L~~~GV~ 124 (177)
T PRK14156 110 VQESLIQALKEEGVE 124 (177)
T ss_pred HHHHHHHHHHHCCCe
Confidence 666666666778875
No 52
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=60.26 E-value=1.4e+02 Score=27.38 Aligned_cols=37 Identities=19% Similarity=0.193 Sum_probs=22.4
Q ss_pred hhHHHHHHHHhhcccchhHHHHHhhhhhcCHHHHHHH
Q 024845 114 TAGGAIGLGSFLLKRPRHFLYYNTLRLFASEESLLSR 150 (261)
Q Consensus 114 a~g~a~~ag~lll~~PRrfL~r~TlgrF~SEEall~~ 150 (261)
+...-++..++|+--=.+|||+-..+-+.-=+.-+.+
T Consensus 7 t~~~qiInFlILv~lL~~fl~kPi~~~l~eR~~~I~~ 43 (250)
T PRK14474 7 TVVAQIINFLILVYLLRRFLYKPIIQVMKKRQQRIAN 43 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555566666899998887766554444333
No 53
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=60.12 E-value=2.3e+02 Score=31.99 Aligned_cols=60 Identities=22% Similarity=0.302 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhccCC
Q 024845 163 DRLKAESEKLEKVALVAEDEL-IRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIVGELP 222 (261)
Q Consensus 163 dl~k~Es~KL~eraa~AE~E~-~rGrtkLr~ag~qiq~l~~s~yk~E~~A~gL~d~Lr~LP 222 (261)
+..+.+...|.+..+.++++. +.+-..+-+....+..|-+.+-++|.+-..|.+.+.++-
T Consensus 368 ~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~ 428 (1074)
T KOG0250|consen 368 RKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVK 428 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444445555555555 666666777777777777777788777777777776654
No 54
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=59.67 E-value=2.1e+02 Score=29.31 Aligned_cols=31 Identities=13% Similarity=0.208 Sum_probs=17.7
Q ss_pred HHHHHHHHhHhHHHHHHH-HHHHHHHHHhhhh
Q 024845 226 ASRFRSQVSNIASEAKRE-RNALTKEVSKISN 256 (261)
Q Consensus 226 A~~LRseVAs~AS~vK~q-R~aL~k~l~KIs~ 256 (261)
|-++|.-+......+.++ +..|.+.+..|.+
T Consensus 485 ~~~~~~~l~~~~~~l~~~~~~~le~~~~~~f~ 516 (650)
T TIGR03185 485 ADKAKKTLKEFREKLLERKLQQLEEEITKSFK 516 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555444 6667777666653
No 55
>PRK14147 heat shock protein GrpE; Provisional
Probab=59.53 E-value=1.2e+02 Score=26.57 Aligned_cols=93 Identities=14% Similarity=0.204 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH--HHHHHHHHhhHHHHhccCCchHHHHHHHHHh
Q 024845 157 QLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINS--AYKIERQAAGLKDIVGELPRREASRFRSQVS 234 (261)
Q Consensus 157 eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr~ag~qiq~l~~s--~yk~E~~A~gL~d~Lr~LP~reA~~LRseVA 234 (261)
+|...++.+++|+..|.++ +.|-..++-+-.+..++-... -|..++-+..|++.+..|=+.-.. ......
T Consensus 22 ~l~~~l~~l~~e~~elkd~-------~lR~~Ad~eN~rkR~~kE~e~~~~~a~~~~~~~lLpv~DnlerAl~~-~~~~~~ 93 (172)
T PRK14147 22 PLKAEVESLRSEIALVKAD-------ALRERADLENQRKRIARDVEQARKFANEKLLGELLPVFDSLDAGLTA-AGTEPS 93 (172)
T ss_pred hHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhc-ccchHH
Confidence 3555555555555555544 445555555555555554443 466788899999888877553211 011111
Q ss_pred HhHHHHHHHHHHHHHHHHhhhhcCCC
Q 024845 235 NIASEAKRERNALTKEVSKISNYGIS 260 (261)
Q Consensus 235 s~AS~vK~qR~aL~k~l~KIs~~GI~ 260 (261)
+-+..-..++.+-+.-..++||.
T Consensus 94 ---~l~~Gv~mi~k~l~~~L~~~Gv~ 116 (172)
T PRK14147 94 ---PLRDGLELTYKQLLKVAADNGLT 116 (172)
T ss_pred ---HHHHHHHHHHHHHHHHHHHCCCE
Confidence 22344455555555556677874
No 56
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=59.47 E-value=1.5e+02 Score=27.38 Aligned_cols=51 Identities=10% Similarity=0.064 Sum_probs=37.5
Q ss_pred HHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024845 132 FLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDE 182 (261)
Q Consensus 132 fL~r~TlgrF~SEEall~~Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~E 182 (261)
..|..+..++..|-..+..-+.-+++++..++.|-.|-....+.+..-..+
T Consensus 11 ~~lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~D 61 (230)
T PF10146_consen 11 LELEKLKNEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQD 61 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677778888888888888888888888888887777776666554443
No 57
>PRK09039 hypothetical protein; Validated
Probab=59.44 E-value=1.7e+02 Score=28.09 Aligned_cols=43 Identities=14% Similarity=0.234 Sum_probs=20.4
Q ss_pred HHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024845 132 FLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVAL 177 (261)
Q Consensus 132 fL~r~TlgrF~SEEall~~Ae~~v~eLr~svdl~k~Es~KL~eraa 177 (261)
|.+..++-.+.. -+...+.++.+|-..+++-.+....|++++.
T Consensus 42 ~fLs~~i~~~~~---eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~ 84 (343)
T PRK09039 42 FFLSREISGKDS---ALDRLNSQIAELADLLSLERQGNQDLQDSVA 84 (343)
T ss_pred HHHHHHHhhHHH---HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 444444444333 3455555555555555544444444444443
No 58
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.90 E-value=1.7e+02 Score=27.90 Aligned_cols=77 Identities=14% Similarity=0.218 Sum_probs=61.5
Q ss_pred cchhHHHHHhhhh-hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 024845 128 RPRHFLYYNTLRL-FASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSA 204 (261)
Q Consensus 128 ~PRrfL~r~Tlgr-F~SEEall~~Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr~ag~qiq~l~~s~ 204 (261)
.|+.-+|-.+++= .+.-+.-++..+.++..+...|+.+-+....+....--..+++-.--.++...-++|.-+-..|
T Consensus 19 ~~~t~V~a~~~~~~i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I 96 (265)
T COG3883 19 AFLTTVFAALLSDKIQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENI 96 (265)
T ss_pred hhcchhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677778788877 7888888888888888888888888888888888888888888888888888888887665443
No 59
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=58.23 E-value=84 Score=29.73 Aligned_cols=78 Identities=15% Similarity=0.191 Sum_probs=44.9
Q ss_pred ChhhhhHHHHHHHHhhcccchhHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 024845 110 HPFITAGGAIGLGSFLLKRPRHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGR 187 (261)
Q Consensus 110 hP~~a~g~a~~ag~lll~~PRrfL~r~TlgrF~SEEall~~Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGr 187 (261)
+|-.+..+-.++|.|...--=-+-|+.+...-.--..-+..++.+.+..+..++..+.++.++.+.+..-+.+|...-
T Consensus 185 ~~e~v~~~S~Aa~~Lc~WV~A~~~Y~~v~~~V~P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~ 262 (344)
T PF12777_consen 185 NPEKVRKASKAAGSLCKWVRAMVKYYEVNKEVEPKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQ 262 (344)
T ss_dssp SHHHHHHH-TTHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555666666555545566777766555555555666666666666666666666665555555555554433
No 60
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=57.84 E-value=55 Score=26.48 Aligned_cols=28 Identities=21% Similarity=0.267 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024845 147 LLSRADTKVKQLRQSIDRLKAESEKLEK 174 (261)
Q Consensus 147 ll~~Ae~~v~eLr~svdl~k~Es~KL~e 174 (261)
-+...+++...|++.-+.++.|.+.|.+
T Consensus 35 q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 35 QVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3444444444444444444555444443
No 61
>PRK14155 heat shock protein GrpE; Provisional
Probab=56.48 E-value=1.3e+02 Score=27.48 Aligned_cols=100 Identities=21% Similarity=0.213 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH--HHHHHHHHHhhHHHHhccCCchHHHHHH-
Q 024845 154 KVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVIN--SAYKIERQAAGLKDIVGELPRREASRFR- 230 (261)
Q Consensus 154 ~v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr~ag~qiq~l~~--s~yk~E~~A~gL~d~Lr~LP~reA~~LR- 230 (261)
..++|...++.++.|...|.++..-+..||. +-.+-.++-.. .-|.+++-+..|+..+..|=+.-..--.
T Consensus 14 ~~~~l~~~l~~le~e~~elkd~~lR~~Aefe-------N~RKR~~kE~e~~~~~a~~~~~~~LLpV~DnLerAl~~~~~~ 86 (208)
T PRK14155 14 EADDAAQEIEALKAEVAALKDQALRYAAEAE-------NTKRRAEREMNDARAYAIQKFARDLLGAADNLGRATAASPKD 86 (208)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhHHHHHhccccc
Confidence 3466666677777777766666555555554 43333333332 2577899999999988887553221000
Q ss_pred HHHhHhHHHHHHHHHHHHHHHHhhhhcCCC
Q 024845 231 SQVSNIASEAKRERNALTKEVSKISNYGIS 260 (261)
Q Consensus 231 seVAs~AS~vK~qR~aL~k~l~KIs~~GI~ 260 (261)
+.-..+.+-+..-..++.+-+.-+.++||.
T Consensus 87 ~~~~~~~~i~~Gvemi~k~~~~~L~k~GV~ 116 (208)
T PRK14155 87 SADPAVKNFIIGVEMTEKELLGAFERNGLK 116 (208)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 000112233344445555555555677774
No 62
>PRK14150 heat shock protein GrpE; Provisional
Probab=56.41 E-value=1.5e+02 Score=26.51 Aligned_cols=80 Identities=13% Similarity=0.298 Sum_probs=46.0
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHH--HHHHHHHHhhHHHHhccCCchHHHHHHHHHhHhHHHHHHHHHHHHHHHHhhhhc
Q 024845 180 EDELIRGRTKLRQAGKQIQGVINS--AYKIERQAAGLKDIVGELPRREASRFRSQVSNIASEAKRERNALTKEVSKISNY 257 (261)
Q Consensus 180 E~E~~rGrtkLr~ag~qiq~l~~s--~yk~E~~A~gL~d~Lr~LP~reA~~LRseVAs~AS~vK~qR~aL~k~l~KIs~~ 257 (261)
...+.|-.+++-+..+..++-... .|.+++-+..|++.+..|=+.-.. .-..-....+-+..-..++.+-+.-..++
T Consensus 58 kd~~lR~~AefeN~rkR~~kE~~~~~~~a~~~~~~~lL~v~DnlerAl~~-~~~~~~~~~~~~~Gv~mi~~~l~~~L~~~ 136 (193)
T PRK14150 58 RDSVLRARAEVENIRRRAEQDVEKAHKFALEKFANELLPVIDNLERALQA-ADKENEALKALIEGVELTLKSLLDTVAKF 136 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhc-ccccchhHHHHHHHHHHHHHHHHHHHHHC
Confidence 355666666666666655555544 578899999999998888553221 01111112333444455555555555677
Q ss_pred CCC
Q 024845 258 GIS 260 (261)
Q Consensus 258 GI~ 260 (261)
||.
T Consensus 137 Gv~ 139 (193)
T PRK14150 137 GVE 139 (193)
T ss_pred CCe
Confidence 764
No 63
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=56.29 E-value=2.1e+02 Score=32.37 Aligned_cols=138 Identities=20% Similarity=0.268 Sum_probs=102.1
Q ss_pred HHhhcccchhHHHHHh--hhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 024845 122 GSFLLKRPRHFLYYNT--LRLFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQG 199 (261)
Q Consensus 122 g~lll~~PRrfL~r~T--lgrF~SEEall~~Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr~ag~qiq~ 199 (261)
-+..|.-.++-||-.- -.+|.|.+..=+-.-.....|...++..+.-..+|+.-..-.|.++..-..+++.--..|..
T Consensus 364 rl~~l~~~~~~l~~Kqgr~sqFssk~eRDkwir~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e 443 (1200)
T KOG0964|consen 364 RLAKLEQKQRDLLAKQGRYSQFSSKEERDKWIRSEIEKLKRGINDTKEQENILQKEIEDLESELKEKLEEIKELESSINE 443 (1200)
T ss_pred HHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhh
Confidence 3445555666665332 24689999988888899999999999999999999888888888887777666666555555
Q ss_pred HHHHHHHHHHHHhhHHHHhccCCc------hHHHHHHHHHhHhHHHHHHHHHHHHHHHHhhhhcCC
Q 024845 200 VINSAYKIERQAAGLKDIVGELPR------REASRFRSQVSNIASEAKRERNALTKEVSKISNYGI 259 (261)
Q Consensus 200 l~~s~yk~E~~A~gL~d~Lr~LP~------reA~~LRseVAs~AS~vK~qR~aL~k~l~KIs~~GI 259 (261)
.-.++......-..++..+.++-. ||=.+||+.++++-.+|++.-+.|.....+=.--||
T Consensus 444 ~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~~~~L~~~~~r~v~nGi 509 (1200)
T KOG0964|consen 444 TKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLSRAEKNLRATMNRSVANGI 509 (1200)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhh
Confidence 555555555556667777766644 566789999999999999998888877665444555
No 64
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=56.21 E-value=1.5e+02 Score=26.51 Aligned_cols=65 Identities=18% Similarity=0.346 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHh
Q 024845 144 EESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIV 218 (261)
Q Consensus 144 EEall~~Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr~ag~qiq~l~~s~yk~E~~A~gL~d~L 218 (261)
=|+++...++....+++.|+.+..+.+.-+..+. .+|+.--..-..+++++|.+|.++.+|-..+
T Consensus 141 Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~----------~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei 205 (221)
T PF05700_consen 141 LEAMLKRLEKELAKLKKEIEEVNRERKRRQEEAG----------EELRYLEQRWKELVSKNLEIEVACEELEQEI 205 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678889999999999999999998887776532 3455555566667777888888777766433
No 65
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=55.97 E-value=2.6e+02 Score=29.22 Aligned_cols=61 Identities=15% Similarity=0.189 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhccCCch-------------HHHHHHHHHhHhHHHHHHHHHHHH
Q 024845 188 TKLRQAGKQIQGVINSAYKIERQAAGLKDIVGELPRR-------------EASRFRSQVSNIASEAKRERNALT 248 (261)
Q Consensus 188 tkLr~ag~qiq~l~~s~yk~E~~A~gL~d~Lr~LP~r-------------eA~~LRseVAs~AS~vK~qR~aL~ 248 (261)
..+.....+|+.+-..+-.++.++..|.+.|+++-.. ++-.|+-+++.+..++|..+.-..
T Consensus 283 ~e~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~~~~RDrt~aeLh~aRLe~aql~~qLad~~l~lke~~~q~~ 356 (546)
T PF07888_consen 283 QENEALKEQLRSAQEQLQASQQEAELLRKELSDAVNVRDRTMAELHQARLEAAQLKLQLADASLELKEGRSQWA 356 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334456667777777777788888888888877664 577777777777777765554333
No 66
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=55.82 E-value=1.9e+02 Score=27.62 Aligned_cols=104 Identities=20% Similarity=0.295 Sum_probs=60.4
Q ss_pred hhhhcCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH----HHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 024845 138 LRLFASEESLLSRADTKVKQ----LRQSIDRLKAESEKLEKVALVAED----ELIRGRTKLRQAGKQIQGVINSAYKIER 209 (261)
Q Consensus 138 lgrF~SEEall~~Ae~~v~e----Lr~svdl~k~Es~KL~eraa~AE~----E~~rGrtkLr~ag~qiq~l~~s~yk~E~ 209 (261)
+..+++++.+|..-...+.+ |+..-+.++.|...|.+...-.+. |+.+-+.+|...-.+|...-+.+-..+.
T Consensus 153 ~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~ 232 (312)
T smart00787 153 LEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEE 232 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777766665554 344445566666666555554432 6666667777777777666666666666
Q ss_pred HHhhHHHHhccCCchHHHHHHHHHhHhHHHHHH
Q 024845 210 QAAGLKDIVGELPRREASRFRSQVSNIASEAKR 242 (261)
Q Consensus 210 ~A~gL~d~Lr~LP~reA~~LRseVAs~AS~vK~ 242 (261)
+-..+.+.+...- .+=.+++++++..-+.+.+
T Consensus 233 ~l~~l~~~I~~~~-~~k~e~~~~I~~ae~~~~~ 264 (312)
T smart00787 233 ELQELESKIEDLT-NKKSELNTEIAEAEKKLEQ 264 (312)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHh
Confidence 6666666655432 2334555555555444433
No 67
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=55.79 E-value=2.6e+02 Score=29.20 Aligned_cols=51 Identities=27% Similarity=0.294 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 024845 147 LLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQI 197 (261)
Q Consensus 147 ll~~Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr~ag~qi 197 (261)
++..+.++..++...++.++.|...|..+..-++++...-+-+++....-|
T Consensus 100 ~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l 150 (546)
T KOG0977|consen 100 LLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRL 150 (546)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhh
Confidence 345555666666666677777776666666666666666565555444333
No 68
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=55.65 E-value=1.7e+02 Score=26.90 Aligned_cols=93 Identities=17% Similarity=0.233 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhccC---------------
Q 024845 157 QLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIVGEL--------------- 221 (261)
Q Consensus 157 eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr~ag~qiq~l~~s~yk~E~~A~gL~d~Lr~L--------------- 221 (261)
+.+..++.....+..|.+....-..|+..--..|.....++.-+-..+.+.|....+|.+.|...
T Consensus 42 e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~~~~~~~~~~l~~~de 121 (202)
T PF06818_consen 42 ELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEAELAELREELACAGRLKRQCQLLSESDE 121 (202)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhhccchhhhccccccch
Confidence 33334444444444444444444455556666666666666666666777777777777777765
Q ss_pred -------CchHHHHHHHHHhHhHHHHHHHHHHHHH
Q 024845 222 -------PRREASRFRSQVSNIASEAKRERNALTK 249 (261)
Q Consensus 222 -------P~reA~~LRseVAs~AS~vK~qR~aL~k 249 (261)
+......|+.+|-.+..++..+|.-.+.
T Consensus 122 ak~~~~~~~~~~~~l~~e~erL~aeL~~er~~~e~ 156 (202)
T PF06818_consen 122 AKAQRQAGEDELGSLRREVERLRAELQRERQRREE 156 (202)
T ss_pred hHHhhccccccchhHHHHHHHHHHHHHHHHHhHHH
Confidence 1223455778888888888777765554
No 69
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=55.21 E-value=1.3e+02 Score=25.30 Aligned_cols=54 Identities=19% Similarity=0.183 Sum_probs=34.2
Q ss_pred HHHHhhcccchhHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024845 120 GLGSFLLKRPRHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKLE 173 (261)
Q Consensus 120 ~ag~lll~~PRrfL~r~TlgrF~SEEall~~Ae~~v~eLr~svdl~k~Es~KL~ 173 (261)
+..++|+--=++|||.-..+-+..=+..+..--...+..+..++.+..|.++.+
T Consensus 16 inflil~~lL~~fl~kpi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~l 69 (164)
T PRK14473 16 INFLLLIFLLRTFLYRPVLNLLNERTRRIEESLRDAEKVREQLANAKRDYEAEL 69 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555578999888887777666666666666666655555555554443
No 70
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=54.87 E-value=46 Score=31.48 Aligned_cols=84 Identities=21% Similarity=0.281 Sum_probs=43.5
Q ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhc
Q 024845 140 LFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIVG 219 (261)
Q Consensus 140 rF~SEEall~~Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr~ag~qiq~l~~s~yk~E~~A~gL~d~Lr 219 (261)
.+.--+..+..++.++.++...+..+..+.+........-+.++.....+|..|.+=|.+|.+.--.=+.....+...+.
T Consensus 229 ~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~~~~~~l~~~~~ 308 (344)
T PF12777_consen 229 ELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKERWSEQIEELEEQLK 308 (344)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHHHHHHHHHHHhc
Confidence 33334455555555566666666655555555555555555555555666666665555555443333333333333333
Q ss_pred cCCc
Q 024845 220 ELPR 223 (261)
Q Consensus 220 ~LP~ 223 (261)
.||+
T Consensus 309 ~l~G 312 (344)
T PF12777_consen 309 NLVG 312 (344)
T ss_dssp HHHH
T ss_pred ccHH
Confidence 3333
No 71
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=53.92 E-value=3e+02 Score=29.33 Aligned_cols=156 Identities=12% Similarity=0.204 Sum_probs=79.3
Q ss_pred HHHHHHhhhhhHHHhhhChhh--hhHHHHHHHHhhcccchhHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024845 93 EDAAVGKVKEGIHVAASHPFI--TAGGAIGLGSFLLKRPRHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESE 170 (261)
Q Consensus 93 Ed~~f~kiKegv~~A~~hP~~--a~g~a~~ag~lll~~PRrfL~r~TlgrF~SEEall~~Ae~~v~eLr~svdl~k~Es~ 170 (261)
++-|...||+-+.--...|.. ++.- ....--+-..+||.+.| ..|.. |- +.+.++--.++..-+++++.+.+
T Consensus 502 ~~sF~~~Ik~lL~r~~~qPill~s~~k---~~~p~~~E~l~lL~~a~-~vlre-eY-i~~~~~ar~ei~~rv~~Lk~~~e 575 (717)
T PF10168_consen 502 PPSFEKHIKSLLQRSSSQPILLKSSDK---SSSPSPQECLELLSQAT-KVLRE-EY-IEKQDLAREEIQRRVKLLKQQKE 575 (717)
T ss_pred cchHHHHHHHHhcCCCCCCeecCCCcc---ccCCCCHHHHHHHHHHH-HHHHH-HH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666676655433334544 1110 00011222346666443 44552 22 22334445556666666666666
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhcc-CC--chHHHHHHHHHhHhHHHHHHHHHHH
Q 024845 171 KLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIVGE-LP--RREASRFRSQVSNIASEAKRERNAL 247 (261)
Q Consensus 171 KL~eraa~AE~E~~rGrtkLr~ag~qiq~l~~s~yk~E~~A~gL~d~Lr~-LP--~reA~~LRseVAs~AS~vK~qR~aL 247 (261)
+-++++...+++...=+.+-..-+..+..+...=-++++++..++..+.. +| +.-=-+|+.|+..|..+++.-+..+
T Consensus 576 ~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL~~~~~~l~~l~~si 655 (717)
T PF10168_consen 576 QQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEAEREFKKELERMKDQLQDLKASI 655 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666555555432222222222233445544555666677766666644 33 3322778888888877777766666
Q ss_pred HHHHHhh
Q 024845 248 TKEVSKI 254 (261)
Q Consensus 248 ~k~l~KI 254 (261)
++.=+|+
T Consensus 656 ~~lk~k~ 662 (717)
T PF10168_consen 656 EQLKKKL 662 (717)
T ss_pred HHHHHHH
Confidence 6655554
No 72
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=53.76 E-value=1.6e+02 Score=25.97 Aligned_cols=76 Identities=24% Similarity=0.336 Sum_probs=42.8
Q ss_pred hhhHHHHHHHHhhcccchhHHHHHhhhhhcCH-HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhHHHH
Q 024845 113 ITAGGAIGLGSFLLKRPRHFLYYNTLRLFASE-ESLLSRADTKVKQLRQSIDRLKA-ESEKLEKVALVAEDELIRGRTKL 190 (261)
Q Consensus 113 ~a~g~a~~ag~lll~~PRrfL~r~TlgrF~SE-Eall~~Ae~~v~eLr~svdl~k~-Es~KL~eraa~AE~E~~rGrtkL 190 (261)
+++.+++++|+++ +++.++..++....+ +.++..|+.+.+.++.....--+ |..++ -...|.|+..-+.+|
T Consensus 8 ~~~~vG~~~G~~~----~~~~~~~~~~~A~~~A~~i~~~A~~eAe~~~ke~~~eakee~~~~---r~~~E~E~~~~~~el 80 (201)
T PF12072_consen 8 VALIVGIGIGYLV----RKKINRKKLEQAEKEAEQILEEAEREAEAIKKEAELEAKEEAQKL---RQELERELKERRKEL 80 (201)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 4455566666666 567777766654433 45677777777766655443322 33322 234566666666666
Q ss_pred HHHHH
Q 024845 191 RQAGK 195 (261)
Q Consensus 191 r~ag~ 195 (261)
..--+
T Consensus 81 ~~~E~ 85 (201)
T PF12072_consen 81 QRLEK 85 (201)
T ss_pred HHHHH
Confidence 55433
No 73
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=53.28 E-value=1.5e+02 Score=25.70 Aligned_cols=47 Identities=11% Similarity=-0.028 Sum_probs=40.6
Q ss_pred chhHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024845 129 PRHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKV 175 (261)
Q Consensus 129 PRrfL~r~TlgrF~SEEall~~Ae~~v~eLr~svdl~k~Es~KL~er 175 (261)
-+.|+|.-..+.+..=+..+...-.+.+.+|+.++.+..|.++.+..
T Consensus 21 l~kfawkPI~~~LeeR~~~I~~~Ld~Ae~~r~eA~~l~~e~e~~L~~ 67 (154)
T PRK06568 21 IYRPAKKAILNSLDAKILEVQEKVLKAEKLKEDAALLFEQTNAQIKK 67 (154)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999999989998888888888999888888888877643
No 74
>PF12758 DUF3813: Protein of unknown function (DUF3813); InterPro: IPR024217 This entry represents a family of Bacillus proteins. Their function is unknown.
Probab=52.91 E-value=25 Score=26.97 Aligned_cols=47 Identities=26% Similarity=0.256 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhhhhhh----HHHHHHHHHHH
Q 024845 37 NAVQQVMIYRKIVEESIDSAIEASRSRLSQTRLTASV----HFQQTLDYLQD 84 (261)
Q Consensus 37 ~a~~qa~~~qk~~~~s~d~ai~a~~sr~s~~~~ts~~----h~~~~~~~l~~ 84 (261)
++|.+|..-...-. ..+.+|..||+-||..+.+|+. +++++|+.|+.
T Consensus 11 ~aV~~a~~~~~~~~-~~q~~i~rAKnAlsSAyanss~aE~~QL~q~Q~qL~~ 61 (63)
T PF12758_consen 11 DAVEQAVSAASGSE-EQQKAIQRAKNALSSAYANSSDAEREQLRQFQDQLDQ 61 (63)
T ss_pred HHHHHHHHhcccch-HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 34444443333222 6778899999999999999874 67788887765
No 75
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=52.64 E-value=3e+02 Score=28.83 Aligned_cols=105 Identities=16% Similarity=0.285 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhcc
Q 024845 145 ESLLSRADTKVKQLRQSIDRLKA----ESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIVGE 220 (261)
Q Consensus 145 Eall~~Ae~~v~eLr~svdl~k~----Es~KL~eraa~AE~E~~rGrtkLr~ag~qiq~l~~s~yk~E~~A~gL~d~Lr~ 220 (261)
+.++.....++.+|...-+.++. |.+.|.+....=+.|.++=..+++....+++.++..+..=|-.-.-|...+..
T Consensus 400 ~~~v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~ 479 (594)
T PF05667_consen 400 QALVEASEQRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEK 479 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677788888888888887665 44555666666678888889999999999999999999999999999999999
Q ss_pred CCch---HHHHHHHHHhHhHHHHHHHHHHHHHHH
Q 024845 221 LPRR---EASRFRSQVSNIASEAKRERNALTKEV 251 (261)
Q Consensus 221 LP~r---eA~~LRseVAs~AS~vK~qR~aL~k~l 251 (261)
+|.. .+-- .-|=.+...+++|+.-++|-+
T Consensus 480 ~~k~~~Rs~Yt--~RIlEIv~NI~KQk~eI~KIl 511 (594)
T PF05667_consen 480 LPKDVNRSAYT--RRILEIVKNIRKQKEEIEKIL 511 (594)
T ss_pred CCCCCCHHHHH--HHHHHHHHhHHHHHHHHHHHH
Confidence 9985 2222 335555666677765544443
No 76
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=52.57 E-value=1.6e+02 Score=25.61 Aligned_cols=51 Identities=8% Similarity=-0.022 Sum_probs=31.5
Q ss_pred HHhhcccchhHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024845 122 GSFLLKRPRHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKL 172 (261)
Q Consensus 122 g~lll~~PRrfL~r~TlgrF~SEEall~~Ae~~v~eLr~svdl~k~Es~KL 172 (261)
.++|+--..+|+|....+-+..=+..+.+--.+.++++..++.+..|.+..
T Consensus 41 F~iL~~ll~k~l~~PI~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~eye~~ 91 (181)
T PRK13454 41 LVAIYFVLTRVALPRIGAVLAERQGTITNDLAAAEELKQKAVEAEKAYNKA 91 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444558899988888777666666665555555555555555544433
No 77
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=51.15 E-value=4.3e+02 Score=30.50 Aligned_cols=99 Identities=20% Similarity=0.344 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH--------------HHH----HHHHH
Q 024845 150 RADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINS--------------AYK----IERQA 211 (261)
Q Consensus 150 ~Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr~ag~qiq~l~~s--------------~yk----~E~~A 211 (261)
.++....+|.+.-...++|..++++.+.-..+++..-+++++-+-.+|.-|.+. .-. .+...
T Consensus 462 ~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~ 541 (1293)
T KOG0996|consen 462 ELDEILDSLKQETEGIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKK 541 (1293)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445566677777888888888888888888888888777776666544332 111 33344
Q ss_pred hhHHHHhccCCc--hHHHHHHHHHhHhHHHHHHHHHHHH
Q 024845 212 AGLKDIVGELPR--REASRFRSQVSNIASEAKRERNALT 248 (261)
Q Consensus 212 ~gL~d~Lr~LP~--reA~~LRseVAs~AS~vK~qR~aL~ 248 (261)
.+|-+....||+ .+..+...++..+..+..+-++.|.
T Consensus 542 ~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~ 580 (1293)
T KOG0996|consen 542 TELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLN 580 (1293)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 556666677777 3455555555555555444333333
No 78
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=48.85 E-value=1.6e+02 Score=30.95 Aligned_cols=81 Identities=23% Similarity=0.222 Sum_probs=66.7
Q ss_pred hhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH-------HHHHHH
Q 024845 137 TLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINS-------AYKIER 209 (261)
Q Consensus 137 TlgrF~SEEall~~Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr~ag~qiq~l~~s-------~yk~E~ 209 (261)
.||.|- |.-|-+--+--+....+-..+..|..|.+|-+.-||.++.-=-.||+-|.++|.-+++. --+.|+
T Consensus 21 ~l~~g~--e~ef~rl~k~fed~~ek~~r~~ae~~~~~~~L~Ka~tk~~~ldvklkha~~~vda~ik~rr~ae~d~~~~E~ 98 (604)
T KOG3564|consen 21 ILGEGN--EDEFIRLRKDFEDFEEKWKRTDAELGKYKDLLAKAETKRSALDVKLKHARNQVDAEIKRRRRAEADCEKLET 98 (604)
T ss_pred HhcCcc--HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 467777 55566777788888889999999999999999999999988889999999999998876 456677
Q ss_pred HHhhHHHHhc
Q 024845 210 QAAGLKDIVG 219 (261)
Q Consensus 210 ~A~gL~d~Lr 219 (261)
+-.-+.|-|+
T Consensus 99 ~i~~i~d~l~ 108 (604)
T KOG3564|consen 99 QIQLIKDMLK 108 (604)
T ss_pred HHHHHHHHHh
Confidence 7777777664
No 79
>PRK14141 heat shock protein GrpE; Provisional
Probab=48.69 E-value=2.2e+02 Score=26.09 Aligned_cols=95 Identities=16% Similarity=0.211 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH--HHHHHHHHHhhHHHHhccCCchHHHHHHHH---
Q 024845 158 LRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVIN--SAYKIERQAAGLKDIVGELPRREASRFRSQ--- 232 (261)
Q Consensus 158 Lr~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr~ag~qiq~l~~--s~yk~E~~A~gL~d~Lr~LP~reA~~LRse--- 232 (261)
+...++.++.|...|.++. .|-..++-+-.+..++... ..|.+++-+..|+..+..|=+.-.. ....
T Consensus 36 ~~~~i~~le~e~~elkd~~-------lR~~Ae~eN~RKR~~kE~e~~~~~a~~~~~~dLLpViDnLerAl~~-~~~~~~~ 107 (209)
T PRK14141 36 EPDPLEALKAENAELKDRM-------LRLAAEMENLRKRTQRDVADARAYGIAGFARDMLSVSDNLRRALDA-IPAEARA 107 (209)
T ss_pred hHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhc-ccccccc
Confidence 3344444444554444444 4444444444444444333 3678899999999888877553211 1100
Q ss_pred --HhHhHHHHHHHHHHHHHHHHhhhhcCCC
Q 024845 233 --VSNIASEAKRERNALTKEVSKISNYGIS 260 (261)
Q Consensus 233 --VAs~AS~vK~qR~aL~k~l~KIs~~GI~ 260 (261)
-..+.+-+..-..++.+-+.-+.++||.
T Consensus 108 ~~~~~~~~l~eGv~mi~k~l~~vLek~GV~ 137 (209)
T PRK14141 108 AADAGLKALIEGVEMTERAMLNALERHGVK 137 (209)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHCCCE
Confidence 0123333444455555555555677774
No 80
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=48.45 E-value=38 Score=28.08 Aligned_cols=19 Identities=26% Similarity=0.487 Sum_probs=10.6
Q ss_pred HHHHHHHhhHHHHhccCCc
Q 024845 205 YKIERQAAGLKDIVGELPR 223 (261)
Q Consensus 205 yk~E~~A~gL~d~Lr~LP~ 223 (261)
|..+.-+..|++.+..|..
T Consensus 58 ~~~~~~~~~ll~v~D~l~~ 76 (165)
T PF01025_consen 58 YALEKFLKDLLPVLDNLER 76 (165)
T ss_dssp CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455555666666665544
No 81
>KOG4431 consensus Uncharacterized protein, induced by hypoxia [General function prediction only]
Probab=47.50 E-value=14 Score=30.45 Aligned_cols=31 Identities=19% Similarity=0.275 Sum_probs=24.8
Q ss_pred HHHHHH-hhhhhHHHhhhChhhhhHHHHHHHHhhc
Q 024845 93 EDAAVG-KVKEGIHVAASHPFITAGGAIGLGSFLL 126 (261)
Q Consensus 93 Ed~~f~-kiKegv~~A~~hP~~a~g~a~~ag~lll 126 (261)
||+-|+ |+ +..+++||.+-.|++.++|.++.
T Consensus 14 ed~~~~ekl---~rk~kenP~VPlG~l~t~aal~~ 45 (100)
T KOG4431|consen 14 EDMSQKEKL---LRKAKENPLVPLGCLGTTAALTA 45 (100)
T ss_pred chhhHHHHH---HHHHHhCCCeeehHHHHHHHHHH
Confidence 554453 66 77899999999999999888864
No 82
>PHA02562 46 endonuclease subunit; Provisional
Probab=46.92 E-value=2.9e+02 Score=27.01 Aligned_cols=100 Identities=15% Similarity=0.208 Sum_probs=47.3
Q ss_pred HHHhhc-ccchhHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH----HHHHHHHH
Q 024845 121 LGSFLL-KRPRHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGR----TKLRQAGK 195 (261)
Q Consensus 121 ag~lll-~~PRrfL~r~TlgrF~SEEall~~Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGr----tkLr~ag~ 195 (261)
..|+-+ +..|+=+|...+|.=.= +.+-.....++++++..++.+..+...+.++....+....+-. ..+..-..
T Consensus 142 ~~f~~~~~~er~~il~~l~~~~~~-~~~~~~~k~~~~e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~~~~i~~l~~ 220 (562)
T PHA02562 142 VPFMQLSAPARRKLVEDLLDISVL-SEMDKLNKDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQN 220 (562)
T ss_pred hhHhcCChHhHHHHHHHHhCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 344433 56687777776663221 1122223334445555555555555555444443222222221 22333344
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHhccC
Q 024845 196 QIQGVINSAYKIERQAAGLKDIVGEL 221 (261)
Q Consensus 196 qiq~l~~s~yk~E~~A~gL~d~Lr~L 221 (261)
++..+.+....++.+-..|.+.|-.+
T Consensus 221 e~~~l~~~~~~l~~~l~~l~~~i~~l 246 (562)
T PHA02562 221 KYDELVEEAKTIKAEIEELTDELLNL 246 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555566666666665555444
No 83
>PRK11519 tyrosine kinase; Provisional
Probab=46.80 E-value=3.6e+02 Score=28.14 Aligned_cols=63 Identities=11% Similarity=0.234 Sum_probs=37.2
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhccCCchHHHHHHHHHhHhHHHHHHHHHHHHHHHHhhhh
Q 024845 182 ELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIVGELPRREASRFRSQVSNIASEAKRERNALTKEVSKISN 256 (261)
Q Consensus 182 E~~rGrtkLr~ag~qiq~l~~s~yk~E~~A~gL~d~Lr~LP~reA~~LRseVAs~AS~vK~qR~aL~k~l~KIs~ 256 (261)
.|...+-.+++...+++. ++++-..+.+.+..+|..+. |...+..++...+...+.-+.|.-+
T Consensus 333 ~y~~~hP~v~~l~~~~~~-------L~~~~~~l~~~~~~lp~~e~-----~~~~L~Re~~~~~~lY~~lL~r~~e 395 (719)
T PRK11519 333 LYTKEHPAYRTLLEKRKA-------LEDEKAKLNGRVTAMPKTQQ-----EIVRLTRDVESGQQVYMQLLNKQQE 395 (719)
T ss_pred HhcccCcHHHHHHHHHHH-------HHHHHHHHHHHHHhccHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666655555544 45566666777788887653 4445555555556666555555544
No 84
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=46.43 E-value=2.2e+02 Score=25.63 Aligned_cols=54 Identities=15% Similarity=0.141 Sum_probs=32.0
Q ss_pred HHHHHhhcccchhHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024845 119 IGLGSFLLKRPRHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKL 172 (261)
Q Consensus 119 ~~ag~lll~~PRrfL~r~TlgrF~SEEall~~Ae~~v~eLr~svdl~k~Es~KL 172 (261)
++..++|+--=++|||.-..+-+..=+.-+...-...++.+..++.+..|.+..
T Consensus 12 iInFlil~~lL~kfl~kPi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~ 65 (246)
T TIGR03321 12 LINFLILVWLLKRFLYRPILDAMDAREKKIAGELADADTKKREAEQERREYEEK 65 (246)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555567899988877776665555555555555555555444444433
No 85
>PRK14149 heat shock protein GrpE; Provisional
Probab=46.33 E-value=1.8e+02 Score=26.30 Aligned_cols=90 Identities=13% Similarity=0.182 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH--HHHHHHHHhhHHHHhccCCchHHHHHHHHHhHhHHH
Q 024845 162 IDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINS--AYKIERQAAGLKDIVGELPRREASRFRSQVSNIASE 239 (261)
Q Consensus 162 vdl~k~Es~KL~eraa~AE~E~~rGrtkLr~ag~qiq~l~~s--~yk~E~~A~gL~d~Lr~LP~reA~~LRseVAs~AS~ 239 (261)
++.++.|+..|.++ +.|-..++-+-.+-.++.... -|..++-+..|+..|..|=+.= ..-..-....+-
T Consensus 45 ~~~l~~e~~elkd~-------~lR~~AefEN~rKR~~kE~e~~~~~a~~~~~~~LLpVlDnLerAl--~~~~~~~~~~~l 115 (191)
T PRK14149 45 KEDFELKYKEMHEK-------YLRVHADFENVKKRLERDKSMALEYAYEKIALDLLPVIDALLGAL--KSAAEVDKESAL 115 (191)
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHH--hccccccchHHH
Confidence 34444454444444 444444444444444443333 5678888999988888875421 111111122334
Q ss_pred HHHHHHHHHHHHHhhhhcCCC
Q 024845 240 AKRERNALTKEVSKISNYGIS 260 (261)
Q Consensus 240 vK~qR~aL~k~l~KIs~~GI~ 260 (261)
++.-..++.+-+.-+.++||.
T Consensus 116 ~~Gv~mi~k~l~~vL~k~GV~ 136 (191)
T PRK14149 116 TKGLELTMEKLHEVLARHGIE 136 (191)
T ss_pred HHHHHHHHHHHHHHHHHCCCE
Confidence 556667777777777888874
No 86
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=45.88 E-value=1.9e+02 Score=24.61 Aligned_cols=46 Identities=9% Similarity=-0.013 Sum_probs=22.2
Q ss_pred hhcccchhHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024845 124 FLLKRPRHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAES 169 (261)
Q Consensus 124 lll~~PRrfL~r~TlgrF~SEEall~~Ae~~v~eLr~svdl~k~Es 169 (261)
++|--=..|||+...+-+..=..-+...-...++++..++.+..|.
T Consensus 31 Il~~lL~~fl~kpI~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~ 76 (174)
T PRK07352 31 IVIGLLYYFGRGFLGKILEERREAILQALKEAEERLRQAAQALAEA 76 (174)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333445688877665555444444444444444444444333333
No 87
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=44.25 E-value=1.8e+02 Score=23.87 Aligned_cols=54 Identities=9% Similarity=0.142 Sum_probs=30.7
Q ss_pred HHHHHHHhhcccchhHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024845 117 GAIGLGSFLLKRPRHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESE 170 (261)
Q Consensus 117 ~a~~ag~lll~~PRrfL~r~TlgrF~SEEall~~Ae~~v~eLr~svdl~k~Es~ 170 (261)
..++..++|+--=.+|+|....+-+..=+..+...-...++++..++.+..|.+
T Consensus 9 ~~~i~Flil~~il~~~~~~pi~~~l~~R~~~I~~~l~~a~~~~~~a~~~~~e~~ 62 (156)
T PRK05759 9 GQLIAFLILVWFIMKFVWPPIMKALEERQKKIADGLAAAERAKKELELAQAKYE 62 (156)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555678888887777666555555555555555555444444443
No 88
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=44.19 E-value=5.2e+02 Score=29.20 Aligned_cols=107 Identities=21% Similarity=0.310 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH----HHHHHHHHhhHHHHhcc
Q 024845 145 ESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINS----AYKIERQAAGLKDIVGE 220 (261)
Q Consensus 145 Eall~~Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr~ag~qiq~l~~s----~yk~E~~A~gL~d~Lr~ 220 (261)
|.-+..-+...-.|+.+...+..|.++|++-.+.+|++.+-.-+.|-++...+.-++.- ...|=+.-..|.|.-
T Consensus 98 Eddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~~~~~L~nk~-- 175 (1265)
T KOG0976|consen 98 EDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFMIGEDLHDKN-- 175 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--
Confidence 44456667788889999999999999999999999999888888887776666555543 223333333333332
Q ss_pred CCchHHHHHHHHHhHhHHHHHHHHHHHHHHHHhhhh
Q 024845 221 LPRREASRFRSQVSNIASEAKRERNALTKEVSKISN 256 (261)
Q Consensus 221 LP~reA~~LRseVAs~AS~vK~qR~aL~k~l~KIs~ 256 (261)
-+--.|+.|.-...++...+.+.|..-+.|.-|
T Consensus 176 ---~~lt~~~~q~~tkl~e~~~en~~le~k~~k~~e 208 (1265)
T KOG0976|consen 176 ---EELNEFNMEFQTKLAEANREKKALEEKLEKFKE 208 (1265)
T ss_pred ---hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234567888888888888888888777776544
No 89
>PRK11677 hypothetical protein; Provisional
Probab=44.07 E-value=79 Score=27.05 Aligned_cols=34 Identities=18% Similarity=0.169 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024845 145 ESLLSRADTKVKQLRQSIDRLKAESEKLEKVALV 178 (261)
Q Consensus 145 Eall~~Ae~~v~eLr~svdl~k~Es~KL~eraa~ 178 (261)
|.-+..++.+.+++|+.|+..=.++.+|.+.+.-
T Consensus 35 e~eLe~~k~ele~YkqeV~~HFa~TA~Ll~~L~~ 68 (134)
T PRK11677 35 QYELEKNKAELEEYRQELVSHFARSAELLDTMAK 68 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777778888888888877777777776553
No 90
>PRK12704 phosphodiesterase; Provisional
Probab=43.99 E-value=3.7e+02 Score=27.45 Aligned_cols=26 Identities=15% Similarity=0.207 Sum_probs=12.3
Q ss_pred HHHhHhHHHHHHHHHHHHHHHHhhhh
Q 024845 231 SQVSNIASEAKRERNALTKEVSKISN 256 (261)
Q Consensus 231 seVAs~AS~vK~qR~aL~k~l~KIs~ 256 (261)
.++..+-.++...+.-....|.+|++
T Consensus 124 ~eLe~~~~~~~~~~~~~~~~l~~~a~ 149 (520)
T PRK12704 124 QELEKKEEELEELIEEQLQELERISG 149 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34444444444444444455555554
No 91
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=43.93 E-value=1.7e+02 Score=23.54 Aligned_cols=49 Identities=14% Similarity=0.287 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHhccCCc-hHHHHHHHHHhHhHHHHHH
Q 024845 194 GKQIQGVINSAYKIERQAAGLKDIVGELPR-REASRFRSQVSNIASEAKR 242 (261)
Q Consensus 194 g~qiq~l~~s~yk~E~~A~gL~d~Lr~LP~-reA~~LRseVAs~AS~vK~ 242 (261)
...+..+...+-+.+++-..|-..++.||+ .+-..|+-+++.|--+++.
T Consensus 34 ~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~ 83 (106)
T PF10805_consen 34 REDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKE 83 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHH
Confidence 556666777777788888889999999999 5666788777777655553
No 92
>TIGR03513 GldL_gliding gliding motility-associated protein GldL. This protein family, GldL, is named for the member from Flavobacterium johnsoniae, which is required for a type of rapid gliding motility found in certain members of the Bacteriodetes. However, members are found also in several members of the Bacteriodetes that appear not to be motile
Probab=43.30 E-value=2.7e+02 Score=25.64 Aligned_cols=55 Identities=11% Similarity=0.259 Sum_probs=42.6
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHH----HhhHHHHhccCCchHHHHHHHHHhHhHHHHHH
Q 024845 183 LIRGRTKLRQAGKQIQGVINSAYKIERQ----AAGLKDIVGELPRREASRFRSQVSNIASEAKR 242 (261)
Q Consensus 183 ~~rGrtkLr~ag~qiq~l~~s~yk~E~~----A~gL~d~Lr~LP~reA~~LRseVAs~AS~vK~ 242 (261)
.++=.-+|..+.++|.+| +.+|+++-+ ....+|.. ..+|..||.|+.+||..+..
T Consensus 132 ~~~Y~eqm~~aa~~l~~L-N~~Ye~QL~~as~q~~~~~~i----~~na~~fkeQ~~kLa~NL~s 190 (202)
T TIGR03513 132 QKKYIEQMSSLAANMEGL-NTIYEAQLKGASSHADANNEI----AINSSSLKEEMEKMAANLTS 190 (202)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 334456777788888776 678888876 66666766 89999999999999887764
No 93
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=43.13 E-value=1.5e+02 Score=25.68 Aligned_cols=10 Identities=20% Similarity=0.096 Sum_probs=4.7
Q ss_pred HHhhhhhcCH
Q 024845 135 YNTLRLFASE 144 (261)
Q Consensus 135 r~TlgrF~SE 144 (261)
....|.-..|
T Consensus 60 ~~~~gls~~e 69 (199)
T PF10112_consen 60 LKEAGLSDRE 69 (199)
T ss_pred hhhcCCChhH
Confidence 3444544444
No 94
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=43.00 E-value=5.5e+02 Score=29.22 Aligned_cols=63 Identities=16% Similarity=0.176 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhccCCchHHHHHHHHHhHhHHHHHHHHHHHHHH
Q 024845 188 TKLRQAGKQIQGVINSAYKIERQAAGLKDIVGELPRREASRFRSQVSNIASEAKRERNALTKE 250 (261)
Q Consensus 188 tkLr~ag~qiq~l~~s~yk~E~~A~gL~d~Lr~LP~reA~~LRseVAs~AS~vK~qR~aL~k~ 250 (261)
.++..+..++..+-...-..|.+...+...+.+|-..+|.....+...+..+++.....+.+.
T Consensus 290 ~~~~~~~~~~~~~~~~~~~le~~~~~l~~~~~~l~~~~a~~~~~eL~el~~ql~~~~~~a~~~ 352 (1353)
T TIGR02680 290 DELETAREEERELDARTEALEREADALRTRLEALQGSPAYQDAEELERARADAEALQAAAADA 352 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444455555566666666666766666665555555545444444444433
No 95
>PRK14144 heat shock protein GrpE; Provisional
Probab=42.83 E-value=2.6e+02 Score=25.42 Aligned_cols=96 Identities=10% Similarity=0.146 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH--HHHHHHHHhhHHHHhccCCchHHHHHHHH
Q 024845 155 VKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINS--AYKIERQAAGLKDIVGELPRREASRFRSQ 232 (261)
Q Consensus 155 v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr~ag~qiq~l~~s--~yk~E~~A~gL~d~Lr~LP~reA~~LRse 232 (261)
...+...++.++.|...|.++..-+..||. +-.+-.++-... -|.+++-+..|++.+..|=+.-... ..
T Consensus 47 ~~~l~~~i~~le~e~~elkdk~lR~~Aefe-------N~RKR~~kE~e~~~~~a~~~~~~~LLpV~DnLerAl~~~-~~- 117 (199)
T PRK14144 47 YTALEEQLTLAEQKAHENWEKSVRALAELE-------NVRRRMEREVANAHKYGVEKLISALLPVVDSLEQALQLA-DK- 117 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHcc-cc-
Confidence 334555555556666655555544444444 333333333322 5678888888888887775532210 00
Q ss_pred HhHhHHHHHHHHHHHHHHHHhhhhcCCC
Q 024845 233 VSNIASEAKRERNALTKEVSKISNYGIS 260 (261)
Q Consensus 233 VAs~AS~vK~qR~aL~k~l~KIs~~GI~ 260 (261)
....+-++.-..++.+-+.-..++||.
T Consensus 118 -~~~~~i~~Gv~mi~k~l~~~L~k~GV~ 144 (199)
T PRK14144 118 -NSDPSMHEGLELTMKLFLDALQKFDVE 144 (199)
T ss_pred -cchhHHHHHHHHHHHHHHHHHHHCCCE
Confidence 011233444555555656666677774
No 96
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=42.57 E-value=1.5e+02 Score=28.81 Aligned_cols=71 Identities=27% Similarity=0.371 Sum_probs=49.6
Q ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024845 139 RLFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAG 213 (261)
Q Consensus 139 grF~SEEall~~Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr~ag~qiq~l~~s~yk~E~~A~g 213 (261)
..|.+|+.| +..+.-+..++..+..+..|+..+.+.-..+- ..|+..|..+...|..|...+-.+-.+|..
T Consensus 12 ~lfp~e~SL-~~ld~~i~~l~~~i~~ld~eI~~~v~~q~~~~---~~~~~~l~~a~~~i~~L~~~i~~ik~kA~~ 82 (383)
T PF04100_consen 12 ELFPDEQSL-SNLDELIAKLRKEIRELDEEIKELVREQSSSG---QDAEEDLEEAQEAIQELFEKISEIKSKAEE 82 (383)
T ss_pred HhCCChHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---ccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678898886 66777777777777777777776544333211 356777888888888888887777666543
No 97
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=42.28 E-value=4.2e+02 Score=29.95 Aligned_cols=35 Identities=14% Similarity=0.337 Sum_probs=23.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024845 143 SEESLLSRADTKVKQLRQSIDRLKAESEKLEKVAL 177 (261)
Q Consensus 143 SEEall~~Ae~~v~eLr~svdl~k~Es~KL~eraa 177 (261)
.+|..++.....+++|...++.+..+++.+.+...
T Consensus 438 ~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~ 472 (1041)
T KOG0243|consen 438 QEEKEKKEMAEQIEELEEELENLEKQLKDLTELYM 472 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55566777777777777777777666666655554
No 98
>PRK15022 ferritin-like protein; Provisional
Probab=42.18 E-value=1.9e+02 Score=25.32 Aligned_cols=66 Identities=11% Similarity=0.202 Sum_probs=48.6
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhCh
Q 024845 35 IDNAVQQVMIYRKIVEESIDSAIEASRSRLSQTRLTASVHFQQTLDYLQDVKSEYAAYEDAAVGKVKEGIHVAASHP 111 (261)
Q Consensus 35 ~~~a~~qa~~~qk~~~~s~d~ai~a~~sr~s~~~~ts~~h~~~~~~~l~~~~sey~~yEd~~f~kiKegv~~A~~hP 111 (261)
+.+++..|+-..|.|++++..-.+.|.. -.| ..|.+||+|+..|=- =|-..|++|=+=+..+..++
T Consensus 83 ~~e~fe~al~hEk~vt~~I~~L~~~A~~----~~D------~~t~~FL~wfv~EQ~-eEe~~~~~ild~l~~~~~~g 148 (167)
T PRK15022 83 LEELFQKTLEEYEQRSSTLAQLADEAKA----LND------DSTLNFLRDLEKEQQ-HDGLLLQTILDEVRSAKLAG 148 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----cCC------HhHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCC
Confidence 6689999999999999999998888877 444 455666778777654 24456777766666666553
No 99
>PRK10404 hypothetical protein; Provisional
Probab=42.12 E-value=1.9e+02 Score=23.49 Aligned_cols=65 Identities=20% Similarity=0.129 Sum_probs=34.4
Q ss_pred HHHHhhhhhhhhhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhHHHhhhChhhhhHHHHHHHHhhccc
Q 024845 57 IEASRSRLSQTRLTASVHFQQTLDYLQD-VKSEYAAYEDAAVGKVKEGIHVAASHPFITAGGAIGLGSFLLKR 128 (261)
Q Consensus 57 i~a~~sr~s~~~~ts~~h~~~~~~~l~~-~~sey~~yEd~~f~kiKegv~~A~~hP~~a~g~a~~ag~lll~~ 128 (261)
++..|+|+...-+..-..+..+.+.+-. .+.....-++.+=.++=.+| +|++|+++++|+|+-||
T Consensus 36 ~~~lR~r~~~~L~~ar~~l~~~~~~~~~~~k~aa~~td~yV~e~Pw~av-------GiaagvGlllG~Ll~RR 101 (101)
T PRK10404 36 YVELKARAEKALDDVKKRVSQASDSYYYRAKQAVYRADDYVHEKPWQGI-------GVGAAVGLVLGLLLARR 101 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCcHHHH-------HHHHHHHHHHHHHHhcC
Confidence 5555555555555555455544443222 22222223333333443333 47899999999997654
No 100
>PF06109 HlyE: Haemolysin E (HlyE); InterPro: IPR010356 This family consists of several enterobacterial haemolysin (HlyE) proteins. Haemolysin E (HlyE) is a novel pore-forming toxin of Escherichia coli, Salmonella typhi, and Shigella flexneri. HlyE is unrelated to the well characterised pore-forming E. coli haemolysins of the RTX family, haemolysin A (HlyA), and the enterohaemolysin encoded by the plasmid borne ehxA gene of E. coli 0157. However, it is evident that expression of HlyE in the absence of the RTX toxins is sufficient to give a haemolytic phenotype in E. coli. HlyE is a protein of 34 kDa that is expressed during anaerobic growth of E. coli. Anaerobic expression is controlled by the transcription factor, FNR, such that, upon ingestion and entry into the anaerobic mammalian intestine, HlyE is produced and may then contribute to the colonisation of the host [].; PDB: 2WCD_P 1QOY_A.
Probab=41.97 E-value=2.1e+02 Score=27.12 Aligned_cols=72 Identities=22% Similarity=0.249 Sum_probs=50.6
Q ss_pred HHHHHhHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH-------hhhChhhhhHHHH
Q 024845 47 KIVEESIDSAIEASRSRLSQTRLTASVHFQQTLDYLQDVKSEYAAYEDAAVGKVKEGIHV-------AASHPFITAGGAI 119 (261)
Q Consensus 47 k~~~~s~d~ai~a~~sr~s~~~~ts~~h~~~~~~~l~~~~sey~~yEd~~f~kiKegv~~-------A~~hP~~a~g~a~ 119 (261)
|+..|+.|-|++--.--|.|.. .-..|..|+..|.+|+.||...-..++|.||--++- |..--|.-||+++
T Consensus 11 k~ai~tad~aldlynk~ldqvi--pw~tf~~tikelsrfk~eysq~as~lvg~ik~llm~sqd~yfeatq~vyewcgv~t 88 (299)
T PF06109_consen 11 KNAIDTADKALDLYNKYLDQVI--PWQTFNDTIKELSRFKQEYSQSASTLVGDIKSLLMNSQDRYFEATQTVYEWCGVTT 88 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccchHHHHHHHHhhhC--CchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcchHhHHHHHHHHHHHHhHHH
Confidence 4455566666665544444443 245689999999999999999999999999976663 3334566777775
Q ss_pred H
Q 024845 120 G 120 (261)
Q Consensus 120 ~ 120 (261)
-
T Consensus 89 q 89 (299)
T PF06109_consen 89 Q 89 (299)
T ss_dssp H
T ss_pred H
Confidence 3
No 101
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=41.91 E-value=1.6e+02 Score=22.63 Aligned_cols=66 Identities=18% Similarity=0.258 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhc
Q 024845 147 LLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIVG 219 (261)
Q Consensus 147 ll~~Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr~ag~qiq~l~~s~yk~E~~A~gL~d~Lr 219 (261)
+|..=+.+|..+=.+|.+++.|...|.+.-.... .....|+..-.+++.- --.....-.+|++.|.
T Consensus 5 ~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~----~e~~~L~~en~~L~~e---~~~~~~rl~~LL~kl~ 70 (72)
T PF06005_consen 5 LLEQLEEKIQQAVETIALLQMENEELKEKNNELK----EENEELKEENEQLKQE---RNAWQERLRSLLGKLE 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH----HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhh
Confidence 6778889999999999999999999988654433 4556666666666533 2223334445555443
No 102
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=41.46 E-value=4.6e+02 Score=28.36 Aligned_cols=82 Identities=26% Similarity=0.213 Sum_probs=58.1
Q ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhcc
Q 024845 141 FASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIVGE 220 (261)
Q Consensus 141 F~SEEall~~Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr~ag~qiq~l~~s~yk~E~~A~gL~d~Lr~ 220 (261)
+..||.|+..+-.+=..|...|..+.+|++.+.-.+.-...|--|= ....+.+-...-..|.+-..|.+++++
T Consensus 15 ~~~Ee~Ll~esa~~E~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl-------~~~~~~~~~~~~~~e~~~~~lr~e~ke 87 (717)
T PF09730_consen 15 EEREESLLQESASKEAYLQQRILELENELKQLRQELSNVQAENERL-------SQLNQELRKECEDLELERKRLREEIKE 87 (717)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4579999999999999999999999999888765554444443332 223333333455567788889999999
Q ss_pred CCchHHHHH
Q 024845 221 LPRREASRF 229 (261)
Q Consensus 221 LP~reA~~L 229 (261)
+..||+--|
T Consensus 88 ~K~rE~rll 96 (717)
T PF09730_consen 88 YKFREARLL 96 (717)
T ss_pred HHHHHHHHh
Confidence 988887544
No 103
>KOG2307 consensus Low density lipoprotein receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.32 E-value=3.8e+02 Score=28.81 Aligned_cols=122 Identities=16% Similarity=0.219 Sum_probs=84.0
Q ss_pred hHHHHHHHHhh--hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhChhhhhHHHHHHHHhhcccc
Q 024845 52 SIDSAIEASRS--RLSQTRLTASVHFQQTLDYLQDVKSEYAAYEDAAVGKVKEGIHVAASHPFITAGGAIGLGSFLLKRP 129 (261)
Q Consensus 52 s~d~ai~a~~s--r~s~~~~ts~~h~~~~~~~l~~~~sey~~yEd~~f~kiKegv~~A~~hP~~a~g~a~~ag~lll~~P 129 (261)
.+|+.|--+|. .|.+|||.=-.|+...+..+=++.++ -
T Consensus 34 dve~f~s~~R~~v~letLrddLrlylksl~~aMieLIN~--------------D-------------------------- 73 (705)
T KOG2307|consen 34 DVERFMSLARQKVDLETLRDDLRLYLKSLQNAMIELIND--------------D-------------------------- 73 (705)
T ss_pred CHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHhh--------------h--------------------------
Confidence 46777766654 47788888777777775544333221 0
Q ss_pred hhHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH---HHHHHHHHHHHH
Q 024845 130 RHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAG---KQIQGVINSAYK 206 (261)
Q Consensus 130 RrfL~r~TlgrF~SEEall~~Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr~ag---~qiq~l~~s~yk 206 (261)
---|++=-+=|-+-++.++.+++-++.+..|..-+......|+-....-++++++.. ..|++++..+.+
T Consensus 74 --------YADFVnLStnLVgld~aln~i~qpL~qlreei~s~rgsV~ea~~alr~q~se~~~~Re~k~~lldl~~v~~~ 145 (705)
T KOG2307|consen 74 --------YADFVNLSTNLVGLDDALNKIEQPLNQLREEIKSTRGSVGEAERALRQQCSELCSNREKKIELLDLIYVLVA 145 (705)
T ss_pred --------HHHHHhhhhhhccHHHHHHHHHhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 012333334455667888888888888888888888888888888877777777664 456666666777
Q ss_pred HHHHHhhHHHHhccCCchH
Q 024845 207 IERQAAGLKDIVGELPRRE 225 (261)
Q Consensus 207 ~E~~A~gL~d~Lr~LP~re 225 (261)
+|+ |-+.|..-|+++
T Consensus 146 ieK----L~k~L~s~psk~ 160 (705)
T KOG2307|consen 146 IEK----LSKMLLSPPSKE 160 (705)
T ss_pred HHH----HHHHhcCCcccc
Confidence 775 888999999998
No 104
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=40.09 E-value=2.3e+02 Score=24.01 Aligned_cols=39 Identities=13% Similarity=0.098 Sum_probs=18.5
Q ss_pred hhHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024845 130 RHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAE 168 (261)
Q Consensus 130 RrfL~r~TlgrF~SEEall~~Ae~~v~eLr~svdl~k~E 168 (261)
.+|||.-..+.+..=..-+...-...+..+...+.+..+
T Consensus 28 ~k~l~~pi~~~le~R~~~I~~~l~~Ae~~k~eAe~~~~~ 66 (167)
T PRK14475 28 LKVLPKALAGALDAYAAKIQAELDEAQRLREEAQALLAD 66 (167)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378887666655444444333333333333333333333
No 105
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=39.85 E-value=2e+02 Score=23.20 Aligned_cols=57 Identities=12% Similarity=0.069 Sum_probs=32.6
Q ss_pred hHHHHHHHHhhcccchhHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024845 115 AGGAIGLGSFLLKRPRHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEK 171 (261)
Q Consensus 115 ~g~a~~ag~lll~~PRrfL~r~TlgrF~SEEall~~Ae~~v~eLr~svdl~k~Es~K 171 (261)
.+.-++..++|+--=.+|||.-..+-+..=+..+...-.+.++++...+.+..|.++
T Consensus 8 ~~~~~i~flil~~ll~~~l~~pi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~~~e~ 64 (140)
T PRK07353 8 LPLMAVQFVLLTFILNALFYKPVGKVVEEREDYIRTNRAEAKERLAEAEKLEAQYEQ 64 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555788887766666655555555555555555555555544443
No 106
>PF09969 DUF2203: Uncharacterized conserved protein (DUF2203); InterPro: IPR018699 This family has no known function.
Probab=39.59 E-value=1.4e+02 Score=24.89 Aligned_cols=30 Identities=20% Similarity=0.406 Sum_probs=21.3
Q ss_pred HHhHhHHHHHHHHHHHHHHHHhhhhcCCCC
Q 024845 232 QVSNIASEAKRERNALTKEVSKISNYGISV 261 (261)
Q Consensus 232 eVAs~AS~vK~qR~aL~k~l~KIs~~GI~V 261 (261)
++..+-++++.....+...|..|-+.||.|
T Consensus 44 ~~~~~~~~~~~~~~~~~~~i~~i~~~Gv~v 73 (120)
T PF09969_consen 44 EVNGLEAELEELEARLRELIDEIEELGVEV 73 (120)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHcCcEE
Confidence 444455555666677778888999999865
No 107
>PF15456 Uds1: Up-regulated During Septation
Probab=39.20 E-value=1.2e+02 Score=25.43 Aligned_cols=43 Identities=21% Similarity=0.303 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 024845 160 QSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINS 203 (261)
Q Consensus 160 ~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr~ag~qiq~l~~s 203 (261)
..||.+|+|.+.|..|.-..-.-+. =.+|+|.|..-|.++-++
T Consensus 22 eEVe~LKkEl~~L~~R~~~lr~kl~-le~k~RdAa~sl~~l~~~ 64 (124)
T PF15456_consen 22 EEVEELKKELRSLDSRLEYLRRKLA-LESKIRDAAHSLSRLYSS 64 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCC
Confidence 4588889999999999888877777 788888888888777433
No 108
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=38.70 E-value=1.2e+02 Score=28.59 Aligned_cols=55 Identities=24% Similarity=0.308 Sum_probs=39.5
Q ss_pred hhhHHHHHHHHhhcccchhHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024845 113 ITAGGAIGLGSFLLKRPRHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAE 180 (261)
Q Consensus 113 ~a~g~a~~ag~lll~~PRrfL~r~TlgrF~SEEall~~Ae~~v~eLr~svdl~k~Es~KL~eraa~AE 180 (261)
++..+|.+.|+++=-++ =.+.+.+.-+.++..||+..+.++.|.+.+..+...++
T Consensus 12 ~aVFlALavGI~lG~~~-------------l~~~l~~~l~~~~~~lr~e~~~l~~~~~~~~~~~~~~d 66 (308)
T PF11382_consen 12 AAVFLALAVGIVLGSGP-------------LQPNLIDSLEDQFDSLREENDELRAELDALQAQLNAAD 66 (308)
T ss_pred HHHHHHHHHHHHhcchh-------------hchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666654444 45678888889999999999999999988877665443
No 109
>PRK14159 heat shock protein GrpE; Provisional
Probab=38.66 E-value=2.8e+02 Score=24.60 Aligned_cols=79 Identities=19% Similarity=0.230 Sum_probs=42.7
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHH--HHHHHHHHhhHHHHhccCCchHHHHHHHHHhHhHHHHHHHHHHHHHHHHhhhhc
Q 024845 180 EDELIRGRTKLRQAGKQIQGVINS--AYKIERQAAGLKDIVGELPRREASRFRSQVSNIASEAKRERNALTKEVSKISNY 257 (261)
Q Consensus 180 E~E~~rGrtkLr~ag~qiq~l~~s--~yk~E~~A~gL~d~Lr~LP~reA~~LRseVAs~AS~vK~qR~aL~k~l~KIs~~ 257 (261)
...++|-..++-+..+-..+-... -|.+++-+..|+..+..|=+. +..-.+-....+-++.=..++.+-++-..++
T Consensus 43 kd~~lR~~AdfeN~rkR~~rE~e~~~~~a~~~~~~~LLpV~DnlerA--l~~~~~~~~~~~l~~Gv~mi~k~l~~vL~k~ 120 (176)
T PRK14159 43 KDKYMRANAEFENIKKRMEKEKLSAMAYANESFAKDLLDVLDALEAA--VNVECHDEISLKIKEGVQNTLDLFLKKLEKH 120 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHH--HhcccccchHHHHHHHHHHHHHHHHHHHHHC
Confidence 344444444444444444444333 567888888888888777543 1111110111233455556666666667778
Q ss_pred CCC
Q 024845 258 GIS 260 (261)
Q Consensus 258 GI~ 260 (261)
||.
T Consensus 121 Gv~ 123 (176)
T PRK14159 121 GVA 123 (176)
T ss_pred cCE
Confidence 874
No 110
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=38.47 E-value=1.8e+02 Score=22.31 Aligned_cols=80 Identities=16% Similarity=0.139 Sum_probs=39.9
Q ss_pred HHHHHHHHHhHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhChhhhhHHHHHHH
Q 024845 43 MIYRKIVEESIDSAIEASRSRLSQTRLTASVHFQQTLDYLQDVKSEYAAYEDAAVGKVKEGIHVAASHPFITAGGAIGLG 122 (261)
Q Consensus 43 ~~~qk~~~~s~d~ai~a~~sr~s~~~~ts~~h~~~~~~~l~~~~sey~~yEd~~f~kiKegv~~A~~hP~~a~g~a~~ag 122 (261)
.-+-+.+.+.....++.++.++.+..+....+.....+ .+..+++...+..=..|++==..+ =+|++|+++.+|
T Consensus 15 ~~l~~~~~~~~~~~~~~~r~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~V~e~P~~s---vgiAagvG~llG 88 (94)
T PF05957_consen 15 EDLARSAADLAGEKADEARDRAEEALDDARDRAEDAAD---QAREQAREAAEQTEDYVRENPWQS---VGIAAGVGFLLG 88 (94)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHChHHH---HHHHHHHHHHHH
Confidence 33444444444455555555555544444444433332 233333333333333333322211 268899999999
Q ss_pred Hhhccc
Q 024845 123 SFLLKR 128 (261)
Q Consensus 123 ~lll~~ 128 (261)
+|+=|+
T Consensus 89 ~Ll~RR 94 (94)
T PF05957_consen 89 LLLRRR 94 (94)
T ss_pred HHHhCC
Confidence 998553
No 111
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=38.35 E-value=2.7e+02 Score=29.44 Aligned_cols=46 Identities=22% Similarity=0.239 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 024845 150 RADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGK 195 (261)
Q Consensus 150 ~Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr~ag~ 195 (261)
..+++|+.||-.|..+.++++-++.-++..|.++.+-+.++++..+
T Consensus 83 ~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~ 128 (632)
T PF14817_consen 83 ELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRH 128 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667888888888888888888888888888888888777777643
No 112
>cd01056 Euk_Ferritin eukaryotic ferritins. Eukaryotic Ferritin (Euk_Ferritin) domain. Ferritins are the primary iron storage proteins of most living organisms and members of a broad superfamily of ferritin-like diiron-carboxylate proteins. The iron-free (apoferritin) ferritin molecule is a protein shell composed of 24 protein chains arranged in 432 symmetry. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the dinuclear ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite; the protein shell can hold up to 4500 iron atoms. In vertebrates, two types of chains (subunits) have been characterized, H or M (fast) and L (slow), which differ in rates of iron uptake and mineralization. Fe(II) oxidation in the H/M subunits take place initially at the ferroxidase center, a carboxylate-bridged diiron center, located within the subunit four-helix bundle. In a complementary role, negatively charged r
Probab=38.30 E-value=2.3e+02 Score=23.54 Aligned_cols=52 Identities=13% Similarity=0.059 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHH-HHHHHHHHHHHH
Q 024845 35 IDNAVQQVMIYRKIVEESIDSAIEASRSRLSQTRLTASVHFQQTLDYLQD-VKSEYAAYEDAA 96 (261)
Q Consensus 35 ~~~a~~qa~~~qk~~~~s~d~ai~a~~sr~s~~~~ts~~h~~~~~~~l~~-~~sey~~yEd~~ 96 (261)
+..++..|+-..+.+.+.+...++.|.+ ..|..+.|| |+| +..+--..|+.+
T Consensus 84 ~~e~l~~al~~E~~vt~~~~~l~~~A~~----~~D~~t~~f------l~~~fl~eQ~e~~~~~ 136 (161)
T cd01056 84 GLEALELALDLEKLVNQSLLDLHKLASE----HNDPHLADF------LESEFLEEQVESIKKL 136 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhH----cCCHhHHHH------HHHHhhHHHHHHHHHH
Confidence 7789999999999999999999999998 567666555 555 555544444444
No 113
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=38.19 E-value=4.9e+02 Score=27.18 Aligned_cols=37 Identities=27% Similarity=0.407 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024845 149 SRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIR 185 (261)
Q Consensus 149 ~~Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~E~~r 185 (261)
.....++..|+..++.+..|..+|++.....|.++.+
T Consensus 499 ~~~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~ 535 (722)
T PF05557_consen 499 SSLSEELNELQKEIEELERENERLRQELEELESELEK 535 (722)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3346677788999999999999999888888888876
No 114
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=37.98 E-value=3e+02 Score=24.71 Aligned_cols=17 Identities=24% Similarity=0.364 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHhhhhcC
Q 024845 241 KRERNALTKEVSKISNYG 258 (261)
Q Consensus 241 K~qR~aL~k~l~KIs~~G 258 (261)
.+-|++| ..+.--.+||
T Consensus 149 ek~r~vl-ea~~~E~~yg 165 (251)
T PF11932_consen 149 EKFRRVL-EAYQIEMEYG 165 (251)
T ss_pred HHHHHHH-HHHHHHHHhC
Confidence 3444443 3344444555
No 115
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=37.46 E-value=1.3e+02 Score=24.39 Aligned_cols=58 Identities=21% Similarity=0.179 Sum_probs=24.1
Q ss_pred HHHHHHHhhcccchhH-HHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024845 117 GAIGLGSFLLKRPRHF-LYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKLEK 174 (261)
Q Consensus 117 ~a~~ag~lll~~PRrf-L~r~TlgrF~SEEall~~Ae~~v~eLr~svdl~k~Es~KL~e 174 (261)
+.+.+++.+.-|..-+ =|+........-+.-+...+++-+.|+..|+.+++....+++
T Consensus 11 ll~~l~y~l~~g~~G~~~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe 69 (105)
T PRK00888 11 LLVWLQYSLWFGKNGILDYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEE 69 (105)
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHH
Confidence 3333444344444432 233333333333444444444444444444444443334433
No 116
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=37.24 E-value=1.1e+02 Score=27.86 Aligned_cols=38 Identities=18% Similarity=0.200 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHHH
Q 024845 165 LKAESEKLEKVALVAEDELIR----GRTKLRQAGKQIQGVIN 202 (261)
Q Consensus 165 ~k~Es~KL~eraa~AE~E~~r----GrtkLr~ag~qiq~l~~ 202 (261)
|+.|+..|.+.+.-+|.+-.+ +..+..-..+|+..|+.
T Consensus 101 LkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqLL~ 142 (195)
T PF12761_consen 101 LKRELAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQLLD 142 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHH
Confidence 445555566666555555554 45566666667666653
No 117
>PF06009 Laminin_II: Laminin Domain II; InterPro: IPR010307 It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure [].; GO: 0007155 cell adhesion, 0005604 basement membrane; PDB: 2WJS_A.
Probab=37.12 E-value=11 Score=31.27 Aligned_cols=100 Identities=16% Similarity=0.216 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhccCCchHHH--
Q 024845 150 RADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIVGELPRREAS-- 227 (261)
Q Consensus 150 ~Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr~ag~qiq~l~~s~yk~E~~A~gL~d~Lr~LP~reA~-- 227 (261)
.|...+.+--..++.++..+.++.+.+..-..++..--..+.++.++|...-+++..++..+-.|++.|+.|-...-.
T Consensus 7 ~A~~~a~~v~~~~~~i~~~l~~~~~~~~~~~~~v~~t~~~~~~~~~~l~~a~~~v~~L~~~~~~L~~kl~~l~~~~~~~~ 86 (138)
T PF06009_consen 7 EANETAANVLDRLDPISENLENWSENLGEINSDVEETNQDISDANKALDDANNSVKNLEQLAPDLLDKLKPLENLSENNS 86 (138)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence 344444444555555556666666655555555555555666888888888888999999999999999888553322
Q ss_pred HHHHHHhHhHHHHHHHHHHHHH
Q 024845 228 RFRSQVSNIASEAKRERNALTK 249 (261)
Q Consensus 228 ~LRseVAs~AS~vK~qR~aL~k 249 (261)
.++..+..+--.+.+-|.+.++
T Consensus 87 ~ls~nI~~IrelI~qAR~~An~ 108 (138)
T PF06009_consen 87 NLSRNISRIRELIAQARDAANR 108 (138)
T ss_dssp ----------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHhh
Confidence 1666666666666666666543
No 118
>PRK14157 heat shock protein GrpE; Provisional
Probab=36.94 E-value=2.8e+02 Score=25.88 Aligned_cols=20 Identities=15% Similarity=0.130 Sum_probs=15.2
Q ss_pred HHHHHHHHhhHHHHhccCCc
Q 024845 204 AYKIERQAAGLKDIVGELPR 223 (261)
Q Consensus 204 ~yk~E~~A~gL~d~Lr~LP~ 223 (261)
-|.+++-+..|+..|..|=+
T Consensus 123 ~~a~~~~~~dLLpvlDnLeR 142 (227)
T PRK14157 123 QHGIIDVLTALLPALDDIDR 142 (227)
T ss_pred HHHHHHHHHHHhhhhhhHHH
Confidence 45678888888888877755
No 119
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=36.37 E-value=3.1e+02 Score=25.64 Aligned_cols=16 Identities=19% Similarity=0.391 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHhhh
Q 024845 240 AKRERNALTKEVSKIS 255 (261)
Q Consensus 240 vK~qR~aL~k~l~KIs 255 (261)
+|++...+.++|..|+
T Consensus 147 ~k~~~~~vr~hi~~Ls 162 (304)
T PF02646_consen 147 LKEHAKSVRKHIKELS 162 (304)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5666666666666665
No 120
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=36.37 E-value=5.4e+02 Score=27.82 Aligned_cols=74 Identities=19% Similarity=0.223 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhccC
Q 024845 145 ESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIVGEL 221 (261)
Q Consensus 145 Eall~~Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr~ag~qiq~l~~s~yk~E~~A~gL~d~Lr~L 221 (261)
|.-++.|...|..|+..++.++.+...+.+ ..+.+..+-.+.+-+-..++.++.++.-........|.++|+.+
T Consensus 358 e~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~---~~~~ek~~~~~e~q~L~ekl~~lek~~re~qeri~~LE~ELr~l 431 (717)
T PF09730_consen 358 ECKYKVAVSEVIQLKAELKALKSKYNELEE---RYKQEKDRLESEVQNLKEKLMSLEKSSREDQERISELEKELRAL 431 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 566788888899998888888888888877 34456666666777777777777776665666777777777665
No 121
>PF10337 DUF2422: Protein of unknown function (DUF2422); InterPro: IPR018823 This domain is found in proteins conserved in fungi. Their function is not known. This entry represents the N-terminal half of some member proteins which contain IPR018820 from INTERPRO at their C terminus.
Probab=36.01 E-value=4.3e+02 Score=25.86 Aligned_cols=98 Identities=13% Similarity=0.188 Sum_probs=68.0
Q ss_pred hhhhHHHHHHHHhhcccchhHHHHHhhhhhcCH-HHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024845 112 FITAGGAIGLGSFLLKRPRHFLYYNTLRLFASE-ESLLSRA--------------DTKVKQLRQSIDRLKAESEKLEKVA 176 (261)
Q Consensus 112 ~~a~g~a~~ag~lll~~PRrfL~r~TlgrF~SE-Eall~~A--------------e~~v~eLr~svdl~k~Es~KL~era 176 (261)
++.+|++++..+++||-+=+..|-+.+.-+..+ ...++.. -.+.+.|+..+..+.+...+|+-.+
T Consensus 199 ~ig~ai~~~vslliFP~sss~~~~~~~~~~l~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~L~~~~~~l~~~~~~l~~~l 278 (459)
T PF10337_consen 199 LIGIAIALVVSLLIFPESSSHVVLKSMEDYLRLLKKALDAQRNFLQSSEPSDEFDAKSLKKLKATKAKLRALYAKLQAAL 278 (459)
T ss_pred HHHHHHHHHHheeecCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778888899999998777666555433322 1111111 1455888888888899999999999
Q ss_pred HHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHH
Q 024845 177 LVAEDELIRGR---TKLRQAGKQIQGVINSAYKIER 209 (261)
Q Consensus 177 a~AE~E~~rGr---tkLr~ag~qiq~l~~s~yk~E~ 209 (261)
.-+--|+-.|+ .+|+.-..-++++...+..+..
T Consensus 279 ~~~~~Eis~grl~~~Dl~~i~~~lr~l~~~~~gL~~ 314 (459)
T PF10337_consen 279 RFLKLEISYGRLSPDDLKPIFSLLRSLMIPLSGLSS 314 (459)
T ss_pred HHHhhhHeeecCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999887 5666666667777666555544
No 122
>PRK00708 sec-independent translocase; Provisional
Probab=35.59 E-value=3.6e+02 Score=24.89 Aligned_cols=23 Identities=4% Similarity=0.176 Sum_probs=13.1
Q ss_pred HHHHhhcccchhHH-HHHhhhhhc
Q 024845 120 GLGSFLLKRPRHFL-YYNTLRLFA 142 (261)
Q Consensus 120 ~ag~lll~~PRrfL-~r~TlgrF~ 142 (261)
++..|++-||.++= .=+++|++.
T Consensus 13 ~vVaLvV~GPkrLP~~~R~lGk~v 36 (209)
T PRK00708 13 AIVLIVVVGPKDLPPMLRAFGKMT 36 (209)
T ss_pred HHHHHhhcCchHHHHHHHHHHHHH
Confidence 33445666888863 345556553
No 123
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=34.98 E-value=4.1e+02 Score=25.40 Aligned_cols=36 Identities=11% Similarity=0.145 Sum_probs=21.4
Q ss_pred hhHHHHhccCCchHHHHHHHHHhHhHHHHHHHHHHH
Q 024845 212 AGLKDIVGELPRREASRFRSQVSNIASEAKRERNAL 247 (261)
Q Consensus 212 ~gL~d~Lr~LP~reA~~LRseVAs~AS~vK~qR~aL 247 (261)
..+...+..++..+-..++++++....++...+.-|
T Consensus 215 ~~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~l 250 (421)
T TIGR03794 215 SQADFQLAGVAEKELETVEARIKEARYEIEELENKL 250 (421)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555665666666777777766666555554
No 124
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=34.89 E-value=2.6e+02 Score=23.07 Aligned_cols=83 Identities=22% Similarity=0.265 Sum_probs=39.1
Q ss_pred HHHHHHHhhcccchhHHHHHhh----hhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 024845 117 GAIGLGSFLLKRPRHFLYYNTL----RLFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQ 192 (261)
Q Consensus 117 ~a~~ag~lll~~PRrfL~r~Tl----grF~SEEall~~Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr~ 192 (261)
+.=++--|+..+-|-.-++.++ .+..++-. .-+..+..|+..++.+..|+.-++.+...++.++..-..+++.
T Consensus 36 vin~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~---~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~ 112 (151)
T PF11559_consen 36 VINCIYDLLQQRDRDMEQREDLSDKLRRLRSDIE---RLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQ 112 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444555555555444433 33333322 2233444444444444445554455555555555555555555
Q ss_pred HHHHHHHHHH
Q 024845 193 AGKQIQGVIN 202 (261)
Q Consensus 193 ag~qiq~l~~ 202 (261)
...+++++-.
T Consensus 113 ~kee~~klk~ 122 (151)
T PF11559_consen 113 EKEELQKLKN 122 (151)
T ss_pred HHHHHHHHHH
Confidence 5555555543
No 125
>PF09969 DUF2203: Uncharacterized conserved protein (DUF2203); InterPro: IPR018699 This family has no known function.
Probab=34.81 E-value=1.1e+02 Score=25.48 Aligned_cols=59 Identities=24% Similarity=0.285 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHH--HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhccCCc
Q 024845 165 LKAESEKLEKVALVAED--ELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIVGELPR 223 (261)
Q Consensus 165 ~k~Es~KL~eraa~AE~--E~~rGrtkLr~ag~qiq~l~~s~yk~E~~A~gL~d~Lr~LP~ 223 (261)
++.+...+.++....+. +...+..++.....+|+.++..+-..--..+|+=..|-++|+
T Consensus 25 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~Gv~vKd~~~gLvDFPa 85 (120)
T PF09969_consen 25 LKAELEELEERLQELEDSLEVNGLEAELEELEARLRELIDEIEELGVEVKDLDPGLVDFPA 85 (120)
T ss_pred HHHHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHHHHHHcCcEEeCCcceeEeCCc
Confidence 34444444444433322 677788888888888888866655544445554445777776
No 126
>PF14235 DUF4337: Domain of unknown function (DUF4337)
Probab=34.80 E-value=1.2e+02 Score=26.34 Aligned_cols=58 Identities=31% Similarity=0.230 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhHHHHHHHHHHHHHHHHHHH
Q 024845 148 LSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELI-----RGRTKLRQAGKQIQGVINSAY 205 (261)
Q Consensus 148 l~~Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~E~~-----rGrtkLr~ag~qiq~l~~s~y 205 (261)
-...++++..++...+..+.|.+.|++++..+|++.- ..+-.+-.+-=||-=++.++.
T Consensus 68 ~~~~~~~i~~Y~~~~~~~~~e~~~l~~~A~~~e~~~d~~~~~~~~f~~a~~~lQIaI~Lasit 130 (157)
T PF14235_consen 68 RAAYQKKIARYKKEKARYKSEAEELEAKAKEAEAESDHALHHHHRFDLAVALLQIAIVLASIT 130 (157)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcccchhHHHHHHHHHHHHHHHHH
Confidence 4556788888999999999999999988888776543 233344444455555555443
No 127
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=34.47 E-value=6.8e+02 Score=27.77 Aligned_cols=113 Identities=12% Similarity=0.266 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhccCCch
Q 024845 145 ESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIVGELPRR 224 (261)
Q Consensus 145 Eall~~Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr~ag~qiq~l~~s~yk~E~~A~gL~d~Lr~LP~r 224 (261)
+.-+..++....+++..++.++.+...+......++.+...-...+..--..+..+....-.+...-..+-..|..++..
T Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 773 (1163)
T COG1196 694 KNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEA 773 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHHHHhhhhcC
Q 024845 225 EASRFRSQVSNIASEAKRERNALTKEVSKISNYG 258 (261)
Q Consensus 225 eA~~LRseVAs~AS~vK~qR~aL~k~l~KIs~~G 258 (261)
. ..|..++..+.....+....+...=..|...+
T Consensus 774 ~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 (1163)
T COG1196 774 L-AKLKEEIEELEEKRQALQEELEELEEELEEAE 806 (1163)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 128
>PF11157 DUF2937: Protein of unknown function (DUF2937); InterPro: IPR022584 This family of proteins with unknown function appears to be found mainly in Proteobacteria.
Probab=34.42 E-value=1.4e+02 Score=26.06 Aligned_cols=91 Identities=13% Similarity=0.194 Sum_probs=53.4
Q ss_pred HHHHHHHhHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH-HhhhChhhhh-------H
Q 024845 45 YRKIVEESIDSAIEASRSRLSQTRLTASVHFQQTLDYLQDVKSEYAAYEDAAVGKVKEGIH-VAASHPFITA-------G 116 (261)
Q Consensus 45 ~qk~~~~s~d~ai~a~~sr~s~~~~ts~~h~~~~~~~l~~~~sey~~yEd~~f~kiKegv~-~A~~hP~~a~-------g 116 (261)
|++.+.-.+|++ +-.+..+..+...||.-. ++.+...|+.-+|.+|.+=-+-+. +..-|..... +
T Consensus 28 Y~QrL~g~~~e~----~~~v~~F~~~A~~~f~~~---~~~li~~~~~s~dp~~~~~a~~~~~~~~R~~~L~~~~~~l~~~ 100 (167)
T PF11157_consen 28 YQQRLGGHLDEL----RRQVAGFQATAARYFGGD---REALIAHYRQSSDPVFRARAESMQATIERYQRLSQQLQALAQA 100 (167)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHcCCC---HHHHHHHHHhCCCHHHHhhHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 888776666554 455555888888886654 566778888888888742211111 1111222222 2
Q ss_pred HHHHHHHhhcccchhHHHHHhhhhhc
Q 024845 117 GAIGLGSFLLKRPRHFLYYNTLRLFA 142 (261)
Q Consensus 117 ~a~~ag~lll~~PRrfL~r~TlgrF~ 142 (261)
.-..=.+.+++.|..=+.++|+.-|+
T Consensus 101 ~~~~r~~~~~~~~d~~i~~~t~~~f~ 126 (167)
T PF11157_consen 101 SPFERAWYFLRPADPEIAQETWQNFS 126 (167)
T ss_pred ChHHHHHHHHhcccHHHHHHHHHhCC
Confidence 22223356677777777777777774
No 129
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=34.19 E-value=1.4e+02 Score=31.76 Aligned_cols=63 Identities=21% Similarity=0.386 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024845 148 LSRADTKVKQLRQSIDRLKAESEKLEKVA-----------LVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQ 210 (261)
Q Consensus 148 l~~Ae~~v~eLr~svdl~k~Es~KL~era-----------a~AE~E~~rGrtkLr~ag~qiq~l~~s~yk~E~~ 210 (261)
|.+...++..|+.+++.+++-.++....+ .+.+..+..=+.-|++-+.+|..+++.+-.|.++
T Consensus 641 L~~~~~~l~~l~~si~~lk~k~~~Q~~~i~~~~~~~~~s~~L~~~Q~~~I~~iL~~~~~~I~~~v~~ik~i~~~ 714 (717)
T PF10168_consen 641 LERMKDQLQDLKASIEQLKKKLDYQQRQIESQKSPKKKSIVLSESQKRTIKEILKQQGEEIDELVKQIKNIKKI 714 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55566667778888888877777754332 3344455566677888888888888777766654
No 130
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=34.08 E-value=4.3e+02 Score=25.34 Aligned_cols=93 Identities=19% Similarity=0.293 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhccCCchHHHHH
Q 024845 150 RADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIVGELPRREASRF 229 (261)
Q Consensus 150 ~Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr~ag~qiq~l~~s~yk~E~~A~gL~d~Lr~LP~reA~~L 229 (261)
+|.=+|.=||+.++.+. |.++..+....++.+.....-+|.....++..+....-..|...+.+.+.+.+ .
T Consensus 163 sa~vkV~WLR~~L~Ei~-Ea~e~~~~~~~~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e--------~ 233 (269)
T PF05278_consen 163 SAKVKVDWLRSKLEEIL-EAKEIYDQHETREEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITE--------M 233 (269)
T ss_pred HcCcchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------H
Confidence 34445566666666644 44555566666777777777778888888888888888888887777777632 2
Q ss_pred HHHHhHhHHHHHHHHHHHHHHHHhhh
Q 024845 230 RSQVSNIASEAKRERNALTKEVSKIS 255 (261)
Q Consensus 230 RseVAs~AS~vK~qR~aL~k~l~KIs 255 (261)
|.. -++++.+|.-|.++|..|.
T Consensus 234 ~~r----l~~l~~~~~~l~k~~~~~~ 255 (269)
T PF05278_consen 234 KGR----LGELEMESTRLSKTIKSIK 255 (269)
T ss_pred HHH----HHHHHHHHHHHHHHHHHHH
Confidence 222 3344777777777665543
No 131
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=33.71 E-value=5.2e+02 Score=26.17 Aligned_cols=97 Identities=20% Similarity=0.303 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhccCCc------hHH
Q 024845 153 TKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIVGELPR------REA 226 (261)
Q Consensus 153 ~~v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr~ag~qiq~l~~s~yk~E~~A~gL~d~Lr~LP~------reA 226 (261)
..|..|+..++..+.|...|.++...+......-.++|..+..+|..+-..--+.-....+|-..|.++-+ +++
T Consensus 309 ~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~ea 388 (522)
T PF05701_consen 309 ASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSSEAEEAKKEA 388 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666777788888888888888888888888877644444333334444444444432 355
Q ss_pred HHHHHHHhHhHHHHHHHHHHHHH
Q 024845 227 SRFRSQVSNIASEAKRERNALTK 249 (261)
Q Consensus 227 ~~LRseVAs~AS~vK~qR~aL~k 249 (261)
...|.++..+-.++.+-|..+..
T Consensus 389 ~~~~~E~~~~k~E~e~~ka~i~t 411 (522)
T PF05701_consen 389 EEAKEEVEKAKEEAEQTKAAIKT 411 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666666666655555443
No 132
>PF08898 DUF1843: Domain of unknown function (DUF1843); InterPro: IPR014994 This domain is found in functionally uncharacterised proteins. It can be found independently or at the C terminus of the protein.
Probab=33.20 E-value=73 Score=23.75 Aligned_cols=31 Identities=29% Similarity=0.514 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 024845 145 ESLLSRADTKVK---QLRQSIDRLKAESEKLEKV 175 (261)
Q Consensus 145 Eall~~Ae~~v~---eLr~svdl~k~Es~KL~er 175 (261)
.+|...|++..+ +++..++.++.|+.||+.|
T Consensus 20 K~l~~~aeq~L~~~~~i~~al~~Lk~EIaklE~R 53 (53)
T PF08898_consen 20 KALAAQAEQQLAEAGDIAAALEKLKAEIAKLEAR 53 (53)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHHHHHhcC
Confidence 466777777665 6778888888888888753
No 133
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=33.19 E-value=7.4e+02 Score=28.39 Aligned_cols=141 Identities=21% Similarity=0.308 Sum_probs=83.6
Q ss_pred hhhhHHHhhhChhhhh---------HHHHHHHHhhcccchhHHHHHhhhhhcCH----HHHHHHHHHHHHHHHHHHHHHH
Q 024845 100 VKEGIHVAASHPFITA---------GGAIGLGSFLLKRPRHFLYYNTLRLFASE----ESLLSRADTKVKQLRQSIDRLK 166 (261)
Q Consensus 100 iKegv~~A~~hP~~a~---------g~a~~ag~lll~~PRrfL~r~TlgrF~SE----Eall~~Ae~~v~eLr~svdl~k 166 (261)
+..|+.+|+.|-.=++ -++.++|+.=-++.|==|..| ..+|++| +.=|.-|...+++..+.|+.+.
T Consensus 627 l~qa~~~ak~~~ln~ITl~GDqvskkG~lTgGy~D~krsrLe~~k~-~~~~~~~~~~l~~~L~~~r~~i~~~~~~i~q~~ 705 (1200)
T KOG0964|consen 627 LEQALRLAKKHELNCITLSGDQVSKKGVLTGGYEDQKRSRLELLKN-VNESRSELKELQESLDEVRNEIEDIDQKIDQLN 705 (1200)
T ss_pred HHHHHHHHHhcCCCeEEeccceecccCCccccchhhhhhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777754332 235566777667777666554 3667766 2334557777777777777777
Q ss_pred HHHHHHH--------------HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhcc-----CCc---h
Q 024845 167 AESEKLE--------------KVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIVGE-----LPR---R 224 (261)
Q Consensus 167 ~Es~KL~--------------eraa~AE~E~~rGrtkLr~ag~qiq~l~~s~yk~E~~A~gL~d~Lr~-----LP~---r 224 (261)
++.|+++ +.+...-.+..+=...|.--+++|..+-.+..+.+.+...+...|.. |-. .
T Consensus 706 ~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~~Le~i~~~l~~~~~~~~~~e~el~sel~sqLt~ee~e 785 (1200)
T KOG0964|consen 706 NNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGKELEEIKTSLHKLESQSNYFESELGSELFSQLTPEELE 785 (1200)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHhhcCHHHHH
Confidence 7777764 23333333444444444455667777777777777777766655542 322 3
Q ss_pred HHHHHHHHHhHhHHHHH
Q 024845 225 EASRFRSQVSNIASEAK 241 (261)
Q Consensus 225 eA~~LRseVAs~AS~vK 241 (261)
....|+-||..|..++.
T Consensus 786 ~l~kLn~eI~~l~~kl~ 802 (1200)
T KOG0964|consen 786 RLSKLNKEINKLSVKLR 802 (1200)
T ss_pred HHHHhhHHHHHHHHHHH
Confidence 34556666666654433
No 134
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=33.17 E-value=3e+02 Score=23.29 Aligned_cols=99 Identities=18% Similarity=0.289 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH---HHHHHHHHHHHHHHHHHHHHHHhhHHHHhccCCchH
Q 024845 149 SRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTK---LRQAGKQIQGVINSAYKIERQAAGLKDIVGELPRRE 225 (261)
Q Consensus 149 ~~Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtk---Lr~ag~qiq~l~~s~yk~E~~A~gL~d~Lr~LP~re 225 (261)
...+..+..|...+..+-.|+.++.+++..+...+.-|-.. .-+..+-|+-|-..+=..|.........|++.- ..
T Consensus 31 ~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d-~~ 109 (143)
T PF12718_consen 31 EQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLKETTEKLREAD-VK 109 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 34445555555555555555555555555554444444321 222344444455555555555555555555432 22
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHHH
Q 024845 226 ASRFRSQVSNIASEAKRERNALTKEVS 252 (261)
Q Consensus 226 A~~LRseVAs~AS~vK~qR~aL~k~l~ 252 (261)
|-+|--+|..+ ..+|..+++.+.
T Consensus 110 ae~~eRkv~~l----e~~~~~~E~k~e 132 (143)
T PF12718_consen 110 AEHFERKVKAL----EQERDQWEEKYE 132 (143)
T ss_pred hHHHHHHHHHH----HhhHHHHHHHHH
Confidence 34444444444 444444444443
No 135
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=33.07 E-value=2.2e+02 Score=21.69 Aligned_cols=69 Identities=23% Similarity=0.355 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhc
Q 024845 151 ADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIVG 219 (261)
Q Consensus 151 Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr~ag~qiq~l~~s~yk~E~~A~gL~d~Lr 219 (261)
.+..+.+=-..|..+..|.++|-..-..-..-.+.=|.+....-.+|..+-..+-+.|.....|.+.|+
T Consensus 3 l~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~ 71 (74)
T PF12329_consen 3 LEKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLK 71 (74)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455666667778888888888887777777777777888888888888888888888888777777665
No 136
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=32.99 E-value=3.8e+02 Score=24.32 Aligned_cols=61 Identities=21% Similarity=0.308 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhccCCchH
Q 024845 165 LKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIVGELPRRE 225 (261)
Q Consensus 165 ~k~Es~KL~eraa~AE~E~~rGrtkLr~ag~qiq~l~~s~yk~E~~A~gL~d~Lr~LP~re 225 (261)
++.....+..............+..++....+|++|-..+.+...+-..|-+.|.++-...
T Consensus 193 y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~ 253 (312)
T PF00038_consen 193 YQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRL 253 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHH
Confidence 3344444555555556666666666666666777776666666666666666666665433
No 137
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=32.19 E-value=4.1e+02 Score=26.17 Aligned_cols=78 Identities=18% Similarity=0.226 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhccCCch
Q 024845 148 LSRADTKVKQLRQSIDRLKAESEKLEKVALVAED---ELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIVGELPRR 224 (261)
Q Consensus 148 l~~Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~---E~~rGrtkLr~ag~qiq~l~~s~yk~E~~A~gL~d~Lr~LP~r 224 (261)
+.....+..++...+|.++.|..++-+....... +...=..+.++-..+|..+......+|.+-..++..|--||..
T Consensus 30 i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~iPN~~~~ 109 (425)
T PRK05431 30 LLELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELEELLLRIPNLPHD 109 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCc
Confidence 4445666667777777777777776666543110 1111111224445566777777777888777777777777665
Q ss_pred H
Q 024845 225 E 225 (261)
Q Consensus 225 e 225 (261)
+
T Consensus 110 ~ 110 (425)
T PRK05431 110 S 110 (425)
T ss_pred c
Confidence 3
No 138
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.12 E-value=5.8e+02 Score=27.57 Aligned_cols=79 Identities=28% Similarity=0.245 Sum_probs=53.6
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhccC
Q 024845 142 ASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIVGEL 221 (261)
Q Consensus 142 ~SEEall~~Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr~ag~qiq~l~~s~yk~E~~A~gL~d~Lr~L 221 (261)
-.||+|+.-.-++-..+-+.|-.+.+|++++..-+.--..|.- .-.+.-+.+..+-..+|-+=..|.|.|++.
T Consensus 89 e~EesLLqESaakE~~yl~kI~eleneLKq~r~el~~~q~E~e-------rl~~~~sd~~e~~~~~E~qR~rlr~elKe~ 161 (772)
T KOG0999|consen 89 EREESLLQESAAKEEYYLQKILELENELKQLRQELTNVQEENE-------RLEKVHSDLKESNAAVEDQRRRLRDELKEY 161 (772)
T ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhhcchhhHHHHHHHHHHHHHH
Confidence 4599999999999999999999999999998654332222211 112222233334445666777888888888
Q ss_pred CchHHH
Q 024845 222 PRREAS 227 (261)
Q Consensus 222 P~reA~ 227 (261)
.-|||-
T Consensus 162 KfRE~R 167 (772)
T KOG0999|consen 162 KFREAR 167 (772)
T ss_pred HHHHHH
Confidence 888774
No 139
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=32.05 E-value=7.6e+02 Score=27.61 Aligned_cols=37 Identities=16% Similarity=0.219 Sum_probs=26.4
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024845 61 RSRLSQTRLTASVHFQQTLDYLQDVKSEYAAYEDAAV 97 (261)
Q Consensus 61 ~sr~s~~~~ts~~h~~~~~~~l~~~~sey~~yEd~~f 97 (261)
...+.+-+++...+++.+...+..+..++...+..++
T Consensus 499 ~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L~ 535 (1201)
T PF12128_consen 499 EQELRKERDQAEEELRQARRELEELRAQIAELQRQLD 535 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3344455677777888877788888888888777765
No 140
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=31.69 E-value=6.7e+02 Score=26.87 Aligned_cols=54 Identities=20% Similarity=0.224 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHHHHHHHHHHHhhHHHHhcc
Q 024845 164 RLKAESEKLEKVALVAEDELIRGRTKLR-QAGKQIQGVINSAYKIERQAAGLKDIVGE 220 (261)
Q Consensus 164 l~k~Es~KL~eraa~AE~E~~rGrtkLr-~ag~qiq~l~~s~yk~E~~A~gL~d~Lr~ 220 (261)
.+..|.+++.+++...++++..-+.++. .+..+.+.+ +-+..+++..+++.|++
T Consensus 536 ~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~a~~ea~~~---~~~a~~~~~~~i~~lk~ 590 (771)
T TIGR01069 536 KLLKEQEKLKKELEQEMEELKERERNKKLELEKEAQEA---LKALKKEVESIIRELKE 590 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHh
Confidence 3333444444444444444433333322 233333444 33445677777777776
No 141
>PF11657 Activator-TraM: Transcriptional activator TraM
Probab=31.30 E-value=3.5e+02 Score=23.50 Aligned_cols=25 Identities=12% Similarity=-0.049 Sum_probs=12.7
Q ss_pred HhhhhhHHHhhhChhhhhHHHHHHH
Q 024845 98 GKVKEGIHVAASHPFITAGGAIGLG 122 (261)
Q Consensus 98 ~kiKegv~~A~~hP~~a~g~a~~ag 122 (261)
+.++++-.++.-|=..++.+.++++
T Consensus 113 ~~~~~~r~~a~~nl~aa~~~~~aa~ 137 (144)
T PF11657_consen 113 DLVREARKAAILNLVAAVLVLLAAC 137 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666655444443333333
No 142
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=31.24 E-value=8.4e+02 Score=27.85 Aligned_cols=75 Identities=17% Similarity=0.193 Sum_probs=49.5
Q ss_pred cccchhHH--HHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 024845 126 LKRPRHFL--YYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGV 200 (261)
Q Consensus 126 l~~PRrfL--~r~TlgrF~SEEall~~Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr~ag~qiq~l 200 (261)
++.-+.-| |+..+..|+.--.-+..|.......+..++.+..+....++.+..++.+...-..+|......+..+
T Consensus 846 l~~~~~aL~~y~~~l~~l~~~~~~L~~A~~~~~~a~~~le~ae~~l~~~~~e~~~~~~e~~~a~~~l~~l~e~l~~~ 922 (1353)
T TIGR02680 846 LEAVGLALKRFGDHLHTLEVAVRELRHAATRAAEQRARAARAESDAREAAEDAAEARAEAEEASLRLRTLEESVGAM 922 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345556 7777777766666666777777777777777777777666666677777666666666665555544
No 143
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=31.05 E-value=2.6e+02 Score=21.93 Aligned_cols=35 Identities=20% Similarity=0.081 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH--HhhhhhHHHh
Q 024845 73 VHFQQTLDYLQDVKSEYAAYEDAAV--GKVKEGIHVA 107 (261)
Q Consensus 73 ~h~~~~~~~l~~~~sey~~yEd~~f--~kiKegv~~A 107 (261)
..|+..++-+..+.++...+|...= ..+.+.+...
T Consensus 6 ~~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l 42 (105)
T cd00632 6 AQLQQLQQQLQAYIVQRQKVEAQLNENKKALEELEKL 42 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3455555556666666555555443 2344444444
No 144
>PRK03918 chromosome segregation protein; Provisional
Probab=30.86 E-value=6.3e+02 Score=26.28 Aligned_cols=121 Identities=14% Similarity=0.187 Sum_probs=0.0
Q ss_pred HHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH---HHHHHHHHHHHHHHHHHHHHHH
Q 024845 134 YYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRT---KLRQAGKQIQGVINSAYKIERQ 210 (261)
Q Consensus 134 ~r~TlgrF~SEEall~~Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGrt---kLr~ag~qiq~l~~s~yk~E~~ 210 (261)
+...+..+...-.-+...+..+++++..++.+.++...+.+.....+.++..=.. .|.....+++.+-+..-..+.+
T Consensus 174 ~~~~~~~l~~~l~~l~~i~~~l~~l~~~~~~l~~ei~~l~~e~~~l~~~~~~~~~~l~~l~~~~~~~~~l~~~~~~l~~~ 253 (880)
T PRK03918 174 IKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGS 253 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhhHHHHhccCCch-----------------------------HHHHHHHHHhHhHHHHHHHHHHHHHHHHhh
Q 024845 211 AAGLKDIVGELPRR-----------------------------EASRFRSQVSNIASEAKRERNALTKEVSKI 254 (261)
Q Consensus 211 A~gL~d~Lr~LP~r-----------------------------eA~~LRseVAs~AS~vK~qR~aL~k~l~KI 254 (261)
-..+.+.+..+=.. .+..+...+...-..+.+++..+.+.+.++
T Consensus 254 ~~~l~~~i~~l~~el~~l~~~l~~l~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~l 326 (880)
T PRK03918 254 KRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGI 326 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 145
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=30.85 E-value=2.9e+02 Score=22.36 Aligned_cols=54 Identities=20% Similarity=0.296 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 024845 147 LLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGV 200 (261)
Q Consensus 147 ll~~Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr~ag~qiq~l 200 (261)
||.-|+--++=|=..-+-+......|.++...+..+..+.+.++.....+|+.|
T Consensus 60 lfrLaQl~ieYLl~~q~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~l 113 (118)
T PF13815_consen 60 LFRLAQLSIEYLLHCQEYLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKL 113 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777777777777777888888888888888888887777777777776665
No 146
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=30.80 E-value=4.5e+02 Score=24.59 Aligned_cols=85 Identities=15% Similarity=0.216 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH-----H----HHHHHHHHHHHHHHHHHHHHHhhHHHHhcc-CCchHHH
Q 024845 158 LRQSIDRLKAESEKLEKVALVAEDELIRGRTK-----L----RQAGKQIQGVINSAYKIERQAAGLKDIVGE-LPRREAS 227 (261)
Q Consensus 158 Lr~svdl~k~Es~KL~eraa~AE~E~~rGrtk-----L----r~ag~qiq~l~~s~yk~E~~A~gL~d~Lr~-LP~reA~ 227 (261)
.+...+-+..+..++++++..||.++..-+.+ + .....+|..|-...-..|.+-+.+...... = -+-.
T Consensus 168 ~~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~--P~v~ 245 (362)
T TIGR01010 168 RKDTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLAQLRSITPEQN--PQVP 245 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC--CchH
Confidence 45666777777777777777777666554441 1 122334444444455555444444333222 2 2344
Q ss_pred HHHHHHhHhHHHHHHHH
Q 024845 228 RFRSQVSNIASEAKRER 244 (261)
Q Consensus 228 ~LRseVAs~AS~vK~qR 244 (261)
.+|++++.+-.++.+++
T Consensus 246 ~l~~~i~~l~~~i~~e~ 262 (362)
T TIGR01010 246 SLQARIKSLRKQIDEQR 262 (362)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56666666654444433
No 147
>PRK10325 heat shock protein GrpE; Provisional
Probab=30.79 E-value=4e+02 Score=23.91 Aligned_cols=80 Identities=11% Similarity=0.244 Sum_probs=48.5
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHH--HHHHHHHHhhHHHHhccCCchHHHHHHHHHhHhHHHHHHHHHHHHHHHHhhhhc
Q 024845 180 EDELIRGRTKLRQAGKQIQGVINS--AYKIERQAAGLKDIVGELPRREASRFRSQVSNIASEAKRERNALTKEVSKISNY 257 (261)
Q Consensus 180 E~E~~rGrtkLr~ag~qiq~l~~s--~yk~E~~A~gL~d~Lr~LP~reA~~LRseVAs~AS~vK~qR~aL~k~l~KIs~~ 257 (261)
...|.|-..++-+-.+-.++-... .|.+++-+..|+..+..|=+.-.. ...+=....+-+..-+.++.+-+.-..++
T Consensus 59 ~d~~lR~~Ae~eN~rkR~~ke~~~~~~~a~~~~~~~lLpv~DnlerAl~~-~~~~~~~~~~l~~Gv~m~~~~l~~~L~~~ 137 (197)
T PRK10325 59 RDGILRVKAEMENLRRRTELDIEKAHKFALEKFINELLPVIDSLDRALEV-ADKANPDMSAMVEGIELTLKSMLDVVRKF 137 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhc-ccccchhHHHHHHHHHHHHHHHHHHHHHC
Confidence 466778788887777777666655 577889999999988887553211 00000112333444445555555555678
Q ss_pred CCC
Q 024845 258 GIS 260 (261)
Q Consensus 258 GI~ 260 (261)
||.
T Consensus 138 Gv~ 140 (197)
T PRK10325 138 GVE 140 (197)
T ss_pred cCe
Confidence 874
No 148
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=30.65 E-value=8.2e+02 Score=27.54 Aligned_cols=107 Identities=9% Similarity=0.106 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH--HHHHHHHHHHHhhHHHHhccCCchH
Q 024845 148 LSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGV--INSAYKIERQAAGLKDIVGELPRRE 225 (261)
Q Consensus 148 l~~Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr~ag~qiq~l--~~s~yk~E~~A~gL~d~Lr~LP~re 225 (261)
+..++.++.++..+++.+..|.+.+.+.....+.++..-...-++-...|..+ .+.+-.++.+...|-..+.++-..+
T Consensus 972 L~~~e~el~~~~~~ie~le~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL~~~~~~~~l~el~~eI~~l~~~~~~~~~~~ 1051 (1311)
T TIGR00606 972 LKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQMQVLQ 1051 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHH
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHHHhh
Q 024845 226 ASRFRSQVSNIASEAKRERNALTKEVSKI 254 (261)
Q Consensus 226 A~~LRseVAs~AS~vK~qR~aL~k~l~KI 254 (261)
-..-+.++..--+.+..++..+...+.++
T Consensus 1052 ~~~e~~~l~~~~~~l~~~~a~l~g~~k~l 1080 (1311)
T TIGR00606 1052 MKQEHQKLEENIDLIKRNHVLALGRQKGY 1080 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 149
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=30.59 E-value=1.8e+02 Score=24.15 Aligned_cols=44 Identities=20% Similarity=0.435 Sum_probs=38.7
Q ss_pred HhHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 024845 51 ESIDSAIEASRSRLSQTRLTASVHFQQTLDYLQDVKSEYAAYED 94 (261)
Q Consensus 51 ~s~d~ai~a~~sr~s~~~~ts~~h~~~~~~~l~~~~sey~~yEd 94 (261)
..+..-++.++..|.+-++.=..||..|-+.|..+...|+..-+
T Consensus 28 ~~l~~eL~~~k~el~~yk~~V~~HF~~ta~Ll~~l~~~Y~~l~~ 71 (128)
T PF06295_consen 28 AKLEQELEQAKQELEQYKQEVNDHFAQTAELLDNLTQDYQKLYQ 71 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567788999999999999999999999999999999987544
No 150
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=30.43 E-value=8.6e+02 Score=27.74 Aligned_cols=43 Identities=14% Similarity=0.096 Sum_probs=26.4
Q ss_pred HHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024845 55 SAIEASRSRLSQTRLTASVHFQQTLDYLQDVKSEYAAYEDAAV 97 (261)
Q Consensus 55 ~ai~a~~sr~s~~~~ts~~h~~~~~~~l~~~~sey~~yEd~~f 97 (261)
.=|+..-+++.+..+....-..+--+.+.-++.+|..+|-.+-
T Consensus 210 ~qi~~~~~~~~~~~~~~~~~i~~~~e~i~~l~k~i~e~~e~~~ 252 (1074)
T KOG0250|consen 210 EQITESYSEIMESLDHAKELIDLKEEEIKNLKKKIKEEEEKLD 252 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 3455555666666666666666666666666667766665553
No 151
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=30.32 E-value=2.4e+02 Score=21.24 Aligned_cols=40 Identities=18% Similarity=0.335 Sum_probs=22.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024845 143 SEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDE 182 (261)
Q Consensus 143 SEEall~~Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~E 182 (261)
+-+.+....+.+.+.+...++.++++...+.+++.-.++.
T Consensus 59 ~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~ 98 (106)
T PF01920_consen 59 DKEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKK 98 (106)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666666666666666666665555544443
No 152
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=30.18 E-value=3.6e+02 Score=25.08 Aligned_cols=70 Identities=19% Similarity=0.246 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhcc
Q 024845 151 ADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIVGE 220 (261)
Q Consensus 151 Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr~ag~qiq~l~~s~yk~E~~A~gL~d~Lr~ 220 (261)
|++.|..|+..|.++.-|+.+.++|+..|-.-+.-.--.=-..-+.+..+-+..-|.|-....+=..|.+
T Consensus 2 ae~~va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkE 71 (205)
T KOG1003|consen 2 AEADVAALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKE 71 (205)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
No 153
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=29.68 E-value=3.7e+02 Score=27.80 Aligned_cols=36 Identities=17% Similarity=0.217 Sum_probs=24.7
Q ss_pred hhcccchhHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHH
Q 024845 124 FLLKRPRHFLYYNTLRLFASEESLLSRADTKVKQLRQSID 163 (261)
Q Consensus 124 lll~~PRrfL~r~TlgrF~SEEall~~Ae~~v~eLr~svd 163 (261)
..||.||..|=+.+ +++. ...+.+++.+++.++..+
T Consensus 146 ~~lp~~~eil~~~~---L~T~-~~~~~~~~~~k~~~~~w~ 181 (555)
T TIGR03545 146 SQLPDPRALLKGED---LKTV-ETAEEIEKSLKAMQQKWK 181 (555)
T ss_pred ccCCCHHHHhccCC---CCcH-HHHHHHHHHHHHHHHHHH
Confidence 57889999998776 6666 455666666665555554
No 154
>PF15136 UPF0449: Uncharacterised protein family UPF0449
Probab=29.10 E-value=1.1e+02 Score=25.13 Aligned_cols=31 Identities=29% Similarity=0.393 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 024845 173 EKVALVAEDELIRGRTKLRQAGKQIQGVINS 203 (261)
Q Consensus 173 ~eraa~AE~E~~rGrtkLr~ag~qiq~l~~s 203 (261)
-+|+..|...+++-.-.|+.+|.+|++.|..
T Consensus 66 NerLqqa~~~Lkkk~e~L~~age~Le~~i~~ 96 (97)
T PF15136_consen 66 NERLQQARDQLKKKCEELRQAGEELERDIEQ 96 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4666777788888888899999999888754
No 155
>KOG3501 consensus Molecular chaperone Prefoldin, subunit 1 [Posttranslational modification, protein turnover, chaperones]
Probab=29.05 E-value=3.6e+02 Score=22.93 Aligned_cols=42 Identities=26% Similarity=0.364 Sum_probs=37.7
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024845 142 ASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDEL 183 (261)
Q Consensus 142 ~SEEall~~Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~E~ 183 (261)
.+.+++-+.-+++.+..+..|+.+.+--.+|+..++-||.-+
T Consensus 63 ~dk~a~~s~leak~k~see~IeaLqkkK~YlEk~v~eaE~nL 104 (114)
T KOG3501|consen 63 SDKAAVRSHLEAKMKSSEEKIEALQKKKTYLEKTVSEAEQNL 104 (114)
T ss_pred CcHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678889999999999999999999999999999999888654
No 156
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=28.86 E-value=1.6e+02 Score=27.61 Aligned_cols=66 Identities=26% Similarity=0.266 Sum_probs=46.8
Q ss_pred ChhhhhHHHHHHHH-------------hhcccchhHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024845 110 HPFITAGGAIGLGS-------------FLLKRPRHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVA 176 (261)
Q Consensus 110 hP~~a~g~a~~ag~-------------lll~~PRrfL~r~TlgrF~SEEall~~Ae~~v~eLr~svdl~k~Es~KL~era 176 (261)
+|---.++|.++|. ++|+|-..++=.+-+ .++..++..|++.-..+++++..|+.++
T Consensus 134 ~~~~~~avA~vlG~~m~~e~~~d~dvevLL~~ae~L~~vYP~----------~ga~eki~~Lr~~y~~l~~~i~~lE~~V 203 (259)
T PF08657_consen 134 KQRRNTAVALVLGGVMHEEIVEDVDVEVLLRGAEKLCNVYPL----------PGAREKIAALRQRYNQLSNSIAYLEAEV 203 (259)
T ss_pred HHHHHHHHHHhccCcccccccccCCHHHHHHHHHHHHHhCCC----------hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455567777777 555554444322211 1788899999999999999999999999
Q ss_pred HHHHHHHHh
Q 024845 177 LVAEDELIR 185 (261)
Q Consensus 177 a~AE~E~~r 185 (261)
+.-+.++.+
T Consensus 204 aeQ~~qL~~ 212 (259)
T PF08657_consen 204 AEQEAQLER 212 (259)
T ss_pred HHHHHHHHH
Confidence 888877654
No 157
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.83 E-value=6.9e+02 Score=26.12 Aligned_cols=77 Identities=16% Similarity=0.197 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhccC
Q 024845 146 SLLSRADTKVKQLRQSIDRLKA----ESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIVGEL 221 (261)
Q Consensus 146 all~~Ae~~v~eLr~svdl~k~----Es~KL~eraa~AE~E~~rGrtkLr~ag~qiq~l~~s~yk~E~~A~gL~d~Lr~L 221 (261)
.++.--..++.+|.+-.+.++. +-.+|.+..-.-|-|=.+ -.++++.-..++++...+-+-|--+..|+..|..|
T Consensus 300 ~~l~~~~~~~~~ltqqwed~R~pll~kkl~Lr~~l~~~e~e~~e-~~~IqeleqdL~a~~eei~~~eel~~~Lrsele~l 378 (521)
T KOG1937|consen 300 GKLAELNKQMEELTQQWEDTRQPLLQKKLQLREELKNLETEDEE-IRRIQELEQDLEAVDEEIESNEELAEKLRSELEKL 378 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccchHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcC
Confidence 3455556677777777777653 233344555555555556 68899999999999999999999999999999999
Q ss_pred Cc
Q 024845 222 PR 223 (261)
Q Consensus 222 P~ 223 (261)
|.
T Consensus 379 p~ 380 (521)
T KOG1937|consen 379 PD 380 (521)
T ss_pred Cc
Confidence 98
No 158
>PRK10698 phage shock protein PspA; Provisional
Probab=28.66 E-value=4.4e+02 Score=23.78 Aligned_cols=70 Identities=24% Similarity=0.305 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH--------HHHHHHHHHHHHHHHHHHhhHHHHhc
Q 024845 148 LSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQA--------GKQIQGVINSAYKIERQAAGLKDIVG 219 (261)
Q Consensus 148 l~~Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr~a--------g~qiq~l~~s~yk~E~~A~gL~d~Lr 219 (261)
+.++-+.-+.+...++.+..+..++.++|.+| +..|+-.|--. ..++..|-...-..+..+..|.+.|+
T Consensus 47 lA~~~A~~k~~er~~~~~~~~~~~~e~kA~~A---l~~G~EdLAr~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~ 123 (222)
T PRK10698 47 SARALAEKKQLTRRIEQAEAQQVEWQEKAELA---LRKEKEDLARAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIG 123 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566677778888888888888887665 45555555332 34444444444444444444444444
Q ss_pred c
Q 024845 220 E 220 (261)
Q Consensus 220 ~ 220 (261)
.
T Consensus 124 ~ 124 (222)
T PRK10698 124 E 124 (222)
T ss_pred H
Confidence 3
No 159
>PRK11677 hypothetical protein; Provisional
Probab=28.57 E-value=1.6e+02 Score=25.24 Aligned_cols=42 Identities=17% Similarity=0.419 Sum_probs=37.5
Q ss_pred HhHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 024845 51 ESIDSAIEASRSRLSQTRLTASVHFQQTLDYLQDVKSEYAAY 92 (261)
Q Consensus 51 ~s~d~ai~a~~sr~s~~~~ts~~h~~~~~~~l~~~~sey~~y 92 (261)
..+..-++.++..|.+-++--..||.++-+.|..+...|+..
T Consensus 32 ~~le~eLe~~k~ele~YkqeV~~HFa~TA~Ll~~L~~~Y~~L 73 (134)
T PRK11677 32 QALQYELEKNKAELEEYRQELVSHFARSAELLDTMAKDYRQL 73 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677889999999999999999999999999999999864
No 160
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=28.34 E-value=7.4e+02 Score=26.27 Aligned_cols=109 Identities=23% Similarity=0.318 Sum_probs=77.9
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhccC
Q 024845 142 ASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIVGEL 221 (261)
Q Consensus 142 ~SEEall~~Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr~ag~qiq~l~~s~yk~E~~A~gL~d~Lr~L 221 (261)
.+|+.|=.+-++-|-.+...++.+|.+...|.+...-|++ |-.|+-.|+.--+.+++= --|.++...+++..-++-
T Consensus 253 ~~e~Elk~~f~~~~~~i~~~i~~lk~~n~~l~e~i~ea~k-~s~~i~~l~ek~r~l~~D---~nk~~~~~~~mk~K~~~~ 328 (622)
T COG5185 253 PSEQELKLGFEKFVHIINTDIANLKTQNDNLYEKIQEAMK-ISQKIKTLREKWRALKSD---SNKYENYVNAMKQKSQEW 328 (622)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHHHhc
Confidence 4678888889999999999999999999999999998874 777777777777766654 455666666666666666
Q ss_pred Cch-------------HHHHHHHHHhHhHHHH-------------HHHHHHHHHHHHhh
Q 024845 222 PRR-------------EASRFRSQVSNIASEA-------------KRERNALTKEVSKI 254 (261)
Q Consensus 222 P~r-------------eA~~LRseVAs~AS~v-------------K~qR~aL~k~l~KI 254 (261)
|++ |--.||++..++--++ -++|.-|++.|.||
T Consensus 329 ~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i 387 (622)
T COG5185 329 PGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKI 387 (622)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 653 2233455555544333 34667777777776
No 161
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=28.29 E-value=2.7e+02 Score=21.28 Aligned_cols=61 Identities=23% Similarity=0.274 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 024845 148 LSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIE 208 (261)
Q Consensus 148 l~~Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr~ag~qiq~l~~s~yk~E 208 (261)
+..-+.+|..|=.-.+.++.|=..|..+....+.|=-.=..|.-.|...|..+|++.-.+|
T Consensus 2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~le 62 (65)
T TIGR02449 2 LQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKALE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 3455778888888888889999999888888888877778888889999999988876665
No 162
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=28.04 E-value=50 Score=26.42 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024845 147 LLSRADTKVKQLRQSIDRLKAESEK 171 (261)
Q Consensus 147 ll~~Ae~~v~eLr~svdl~k~Es~K 171 (261)
-||+|....+||.+.|+..|+++++
T Consensus 62 tFnDcpeA~~eL~~eI~eAK~dLr~ 86 (91)
T PF08285_consen 62 TFNDCPEAAKELQKEIKEAKADLRK 86 (91)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3789999999999999999999876
No 163
>PRK12704 phosphodiesterase; Provisional
Probab=28.03 E-value=6.7e+02 Score=25.66 Aligned_cols=36 Identities=28% Similarity=0.293 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 024845 166 KAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVI 201 (261)
Q Consensus 166 k~Es~KL~eraa~AE~E~~rGrtkLr~ag~qiq~l~ 201 (261)
.+++++.++++..-|+.+.+-...|..-..+|...-
T Consensus 81 e~~L~qrE~rL~~Ree~Le~r~e~Lekke~eL~~re 116 (520)
T PRK12704 81 RNELQKLEKRLLQKEENLDRKLELLEKREEELEKKE 116 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444333
No 164
>PF01706 FliG_C: FliG C-terminal domain; InterPro: IPR023087 The flagellar motor switch in Escherichia coli and Salmonella typhimurium regulates the direction of flagellar rotation and hence controls swimming behaviour []. The switch is a complex apparatus that responds to signals transduced by the chemotaxis sensory signalling system during chemotactic behaviour []. CheY, the chemotaxis response regulator, is believed to act directly on the switch to induce tumbles in the swimming pattern, but no physical interactions of CheY and switch proteins have yet been demonstrated. The switch complex comprises at least three proteins - FliG, FliM and FliN. It has been shown that FliG interacts with FliM, FliM interacts with itself, and FliM interacts with FliN []. Several residues within the middle third of FliG appear to be strongly involved in the FliG-FliM interaction, with residues near the N- or C-termini being less important []. Such clustering suggests that FliG-FliM interaction plays a central role in switching. Analysis of the FliG, FliM and FliN sequences shows that none are especially hydrophobic or appear to be integral membrane proteins []. This result is consistent with other evidence suggesting that the proteins may be peripheral to the membrane, possibly mounted on the basal body M ring [, ]. FliG is present in about 25 copies per flagellum. This entry represents the C-terminal domain of FliG, the structure of which is known. This domain functions specifically in motor rotation [].; PDB: 3USY_B 3USW_A 3HJL_A 3AJC_A 1LKV_X 1QC7_B.
Probab=27.98 E-value=1.8e+02 Score=22.96 Aligned_cols=44 Identities=16% Similarity=0.385 Sum_probs=36.5
Q ss_pred HHhccCCchHHHHHHHHHhHh----HHHHHHHHHHHHHHHHhhhhcCC
Q 024845 216 DIVGELPRREASRFRSQVSNI----ASEAKRERNALTKEVSKISNYGI 259 (261)
Q Consensus 216 d~Lr~LP~reA~~LRseVAs~----AS~vK~qR~aL~k~l~KIs~~GI 259 (261)
-.|+.+|.+.|-.+|.|+..+ .+++..-|+.+-..+.++.+-|.
T Consensus 59 ~il~nms~r~a~~l~~e~~~~g~v~~~di~~Aq~~iv~~~r~l~~~G~ 106 (110)
T PF01706_consen 59 KILSNMSKRAAEMLREEMEALGPVRLSDIEEAQREIVEIVRRLEEEGE 106 (110)
T ss_dssp HHHTTS-HHHHHHHHHHHHHH-S--HHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCcC
Confidence 478999999999999999886 56788888888888998888884
No 165
>COG2882 FliJ Flagellar biosynthesis chaperone [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=27.86 E-value=2.5e+02 Score=24.52 Aligned_cols=52 Identities=21% Similarity=0.222 Sum_probs=39.7
Q ss_pred HHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhh
Q 024845 54 DSAIEASRSRLSQTRLTASVHFQQTLDYLQDVKSEYAAYEDAAVGKVKEGIHVAAS 109 (261)
Q Consensus 54 d~ai~a~~sr~s~~~~ts~~h~~~~~~~l~~~~sey~~yEd~~f~kiKegv~~A~~ 109 (261)
--.+|-+...||+++ .+|..+..-|..+...|+.|++-+-.+++-|+.++.-
T Consensus 15 ~k~~e~a~~el~k~~----~~~~~~~~qL~~l~~y~~ey~q~~~~k~~~G~s~~q~ 66 (148)
T COG2882 15 KKEEEEAAIELSKIR----SEKENAEEQLKMLSGYRNEYEQNLNEKLKSGVSAAQW 66 (148)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHH
Confidence 334555666566554 5788888888999999999999999999888766543
No 166
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=27.83 E-value=6.7e+02 Score=25.61 Aligned_cols=27 Identities=15% Similarity=0.186 Sum_probs=13.3
Q ss_pred HHHhHhHHHHHHHHHHHHHHHHhhhhc
Q 024845 231 SQVSNIASEAKRERNALTKEVSKISNY 257 (261)
Q Consensus 231 seVAs~AS~vK~qR~aL~k~l~KIs~~ 257 (261)
.++..+-.+....+.-..+.|.+|+++
T Consensus 118 ~eLee~~~e~~~~~~~~~~~le~~a~l 144 (514)
T TIGR03319 118 KNLDEKEEELEELIAEQREELERISGL 144 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 444444444444444445555555543
No 167
>PF02185 HR1: Hr1 repeat; InterPro: IPR000861 The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN) []. The first two of these repeats were later shown to bind the small G protein rho [, ] known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography []. It forms an antiparallel coiled-coil fold termed an ACC finger. This entry includes domains found within rho-associated protein kinases.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1CXZ_B 3O0Z_C 2RMK_B 1URF_A.
Probab=27.36 E-value=2.3e+02 Score=20.74 Aligned_cols=30 Identities=30% Similarity=0.530 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024845 147 LLSRADTKVKQLRQSIDRLKAESEKLEKVA 176 (261)
Q Consensus 147 ll~~Ae~~v~eLr~svdl~k~Es~KL~era 176 (261)
+...|+.+..+-+..|+.++.+++++..+.
T Consensus 34 ~~~~~~~~l~~s~~kI~~L~~~L~~l~~~~ 63 (70)
T PF02185_consen 34 VLSEAESQLRESNQKIELLREQLEKLQQRS 63 (70)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 488889999999999999999988886543
No 168
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=27.11 E-value=5.1e+02 Score=23.98 Aligned_cols=54 Identities=19% Similarity=0.242 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 024845 148 LSRADTKVKQLRQSIDRLKAESEK---LEKVALVAEDELIRGRTKLRQAGKQIQGVI 201 (261)
Q Consensus 148 l~~Ae~~v~eLr~svdl~k~Es~K---L~eraa~AE~E~~rGrtkLr~ag~qiq~l~ 201 (261)
+..++++++..+..++..+.+.++ |.+.=...+.+|..-++.+..+..+++..-
T Consensus 116 ~~~~~~~i~~a~~~l~~a~~~~~R~~~L~~~g~vS~~~~~~a~~~~~~a~~~l~~a~ 172 (346)
T PRK10476 116 AASANEQVERARANAKLATRTLERLEPLLAKGYVSAQQVDQARTAQRDAEVSLNQAL 172 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555555555555444 344445566666666666666666655543
No 169
>KOG4154 consensus Arginine-rich protein [General function prediction only]
Probab=27.08 E-value=59 Score=28.93 Aligned_cols=31 Identities=32% Similarity=0.252 Sum_probs=25.5
Q ss_pred hhhhHHHHHHHHhhcccchhH------HHHHhhhhhc
Q 024845 112 FITAGGAIGLGSFLLKRPRHF------LYYNTLRLFA 142 (261)
Q Consensus 112 ~~a~g~a~~ag~lll~~PRrf------L~r~TlgrF~ 142 (261)
+++.|.++.+++-.|||.|.+ .--.|+|||.
T Consensus 7 ~~~~g~~~~la~s~lpgsralk~~dcevci~~l~rf~ 43 (178)
T KOG4154|consen 7 VATIGFAARLALSSLPGSRALKEEDCEVCIKTLGRFA 43 (178)
T ss_pred HHHHHHHHHHHHHhCCccccCCcccchHHHHHHHHHH
Confidence 468899999999999999986 4557788884
No 170
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=26.67 E-value=4.7e+02 Score=28.33 Aligned_cols=77 Identities=22% Similarity=0.377 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhccCCchHHHHH-HHHHhHhH
Q 024845 159 RQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIVGELPRREASRF-RSQVSNIA 237 (261)
Q Consensus 159 r~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr~ag~qiq~l~~s~yk~E~~A~gL~d~Lr~LP~reA~~L-RseVAs~A 237 (261)
|...+..|.-..||+++..--|+|+++-+.++..+.+. .+-++=..||-++=-+| |.|++..
T Consensus 342 rgElea~kqak~Klee~i~elEEElk~~k~ea~~ar~~----------------~~~~e~ddiPmAqRkRFTRvEMaRV- 404 (832)
T KOG2077|consen 342 RGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDARQK----------------AKDDEDDDIPMAQRKRFTRVEMARV- 404 (832)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------------hcccccccccHHHHhhhHHHHHHHH-
Confidence 34444444445689999999999999999998887655 33456678999888877 6777764
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 024845 238 SEAKRERNALTKEVSKIS 255 (261)
Q Consensus 238 S~vK~qR~aL~k~l~KIs 255 (261)
=-+||.-..+||-+-
T Consensus 405 ---LMeRNqYKErLMELq 419 (832)
T KOG2077|consen 405 ---LMERNQYKERLMELQ 419 (832)
T ss_pred ---HHHHhHHHHHHHHHH
Confidence 447887777777653
No 171
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=26.42 E-value=5.8e+02 Score=24.43 Aligned_cols=23 Identities=9% Similarity=0.167 Sum_probs=16.1
Q ss_pred HHHHhccCCchHHHHHHHHHhHh
Q 024845 214 LKDIVGELPRREASRFRSQVSNI 236 (261)
Q Consensus 214 L~d~Lr~LP~reA~~LRseVAs~ 236 (261)
.++.-|..-..|...|+.++..+
T Consensus 261 ~~~~~r~~t~~Ei~~Lk~~~~~L 283 (312)
T smart00787 261 KLEQCRGFTFKEIEKLKEQLKLL 283 (312)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHH
Confidence 55556666678888888777655
No 172
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=26.35 E-value=2.7e+02 Score=26.61 Aligned_cols=54 Identities=24% Similarity=0.259 Sum_probs=38.1
Q ss_pred HhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 024845 136 NTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQA 193 (261)
Q Consensus 136 ~TlgrF~SEEall~~Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr~a 193 (261)
+.+-+|++.+++.. ...++..-+..+++++++|.+.+.-|.+++++=+.+....
T Consensus 189 ~~~~~~~~~~~~~~----~~~e~~~r~~~lr~~~~~l~~el~~aK~~~~~~~~~~~~~ 242 (264)
T PF07246_consen 189 NDIDKFQEREDEKI----LHEELEARESGLRNESKWLEHELSDAKEDMIRLRNDISDF 242 (264)
T ss_pred chhhhhhhhhhHHH----HHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHhcccch
Confidence 33567777766643 3344555566688899999999999999998877765543
No 173
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=26.24 E-value=7.7e+02 Score=26.87 Aligned_cols=106 Identities=21% Similarity=0.293 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhccCCchHHH
Q 024845 148 LSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIVGELPRREAS 227 (261)
Q Consensus 148 l~~Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr~ag~qiq~l~~s~yk~E~~A~gL~d~Lr~LP~reA~ 227 (261)
+..+......++....-+..|.+.|++-+ -+..++.|....+..++....++.. .-+.+.++..|-... +=-.++..
T Consensus 55 l~~~k~qlr~~q~e~q~~~~ei~~LqeEL-r~q~e~~rL~~~~e~~~~e~e~l~~-ld~~~~q~~rl~~E~-er~~~El~ 131 (775)
T PF10174_consen 55 LSRLKEQLRVTQEENQKAQEEIQALQEEL-RAQRELNRLQQELEKAQYEFESLQE-LDKAQEQFERLQAER-ERLQRELE 131 (775)
T ss_pred HHhHHHHHHHHHhhHHHHHHHHHHHHHHH-HHhhHHHHHHHHhhhcccccchhhh-hhhHHHHHHHHHHHH-HHHHHHHH
Confidence 44444444444555555666666666766 6777777777777777777666655 555566666654432 22235666
Q ss_pred HHHHHHhHhHHHHHHHHHHH---HHHHHhhhh
Q 024845 228 RFRSQVSNIASEAKRERNAL---TKEVSKISN 256 (261)
Q Consensus 228 ~LRseVAs~AS~vK~qR~aL---~k~l~KIs~ 256 (261)
.||+.+-.+-..+-+++..| +..|.|+.+
T Consensus 132 ~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e 163 (775)
T PF10174_consen 132 RLRKTLEELQLRIETQQQTLDKADEEIEKLQE 163 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67766666655555554444 445555544
No 174
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=26.14 E-value=1.8e+02 Score=20.80 Aligned_cols=29 Identities=21% Similarity=0.401 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024845 144 EESLLSRADTKVKQLRQSIDRLKAESEKL 172 (261)
Q Consensus 144 EEall~~Ae~~v~eLr~svdl~k~Es~KL 172 (261)
-..-+...+.+.+.++...+.++.|.++|
T Consensus 22 ~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 22 LNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445555555666666666666665555
No 175
>COG4238 Murein lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=25.94 E-value=3.5e+02 Score=21.70 Aligned_cols=46 Identities=20% Similarity=0.382 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 024845 145 ESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKL 190 (261)
Q Consensus 145 Eall~~Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtkL 190 (261)
++=.+.....|.+|.-.+|.|.++..-+......|..|--|.-..|
T Consensus 24 ~aK~dqlss~vq~LnAkv~qLe~dv~a~~~~~qAAk~eaarAn~rl 69 (78)
T COG4238 24 NAKIDQLSSDVQTLNAKVDQLENDVNAMRSDVQAAKDEAARANQRL 69 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 6677778888888999999998888888888777777765554443
No 176
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=25.92 E-value=1.4e+02 Score=21.80 Aligned_cols=24 Identities=21% Similarity=0.433 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 024845 155 VKQLRQSIDRLKAESEKLEKVALV 178 (261)
Q Consensus 155 v~eLr~svdl~k~Es~KL~eraa~ 178 (261)
|+.|++-|+.+.++.+.|+...+.
T Consensus 1 i~aLrqQv~aL~~qv~~Lq~~fs~ 24 (46)
T PF09006_consen 1 INALRQQVEALQGQVQRLQAAFSQ 24 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999887664
No 177
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=25.87 E-value=3.9e+02 Score=22.23 Aligned_cols=52 Identities=19% Similarity=0.199 Sum_probs=30.0
Q ss_pred HHHhhcccchhHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024845 121 LGSFLLKRPRHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKL 172 (261)
Q Consensus 121 ag~lll~~PRrfL~r~TlgrF~SEEall~~Ae~~v~eLr~svdl~k~Es~KL 172 (261)
..++|+--=.+|||.-..+-+..=+.-+.+.-...++.+..++.+..|.++.
T Consensus 14 nF~il~~iL~~f~~kpi~~~l~~R~~~I~~~l~~A~~~~~eA~~~~~e~~~~ 65 (159)
T PRK13461 14 NFIILLLILKHFFFDKIKAVIDSRQSEIDNKIEKADEDQKKARELKLKNERE 65 (159)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444457888888777776666655555555555555555544444443
No 178
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=25.73 E-value=6.1e+02 Score=24.43 Aligned_cols=72 Identities=19% Similarity=0.199 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhccC
Q 024845 150 RADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIVGEL 221 (261)
Q Consensus 150 ~Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr~ag~qiq~l~~s~yk~E~~A~gL~d~Lr~L 221 (261)
......++++...+-+.+|-.-|.++.---|.++-.|+-.|+.-..+.-+|---.-+.+-..-.|.+.+.+|
T Consensus 132 d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~EL 203 (290)
T COG4026 132 DLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDEL 203 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHh
Confidence 344556777777777777777787777777777777777777666655555444444444444444444443
No 179
>cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This subfamily is composed predominantly of uncharacterized fungal proteins with similarity to Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein (MUG137), which may play a role in meiosis and sporulation in fission yeast. MUG137 contains an N-terminal BAR domain and a C-terminal SH3 domain, similar to endophilins. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invol
Probab=25.67 E-value=5.1e+02 Score=23.55 Aligned_cols=25 Identities=24% Similarity=0.242 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024845 148 LSRADTKVKQLRQSIDRLKAESEKL 172 (261)
Q Consensus 148 l~~Ae~~v~eLr~svdl~k~Es~KL 172 (261)
+..+.++++..|...|-.++-.+|-
T Consensus 116 i~k~RKkLe~rRLdyD~~ksk~~ka 140 (215)
T cd07593 116 YHSARKKLESRRLAYDAALTKSQKA 140 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556666666666666666544433
No 180
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=25.52 E-value=4e+02 Score=25.89 Aligned_cols=54 Identities=20% Similarity=0.328 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 024845 152 DTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIER 209 (261)
Q Consensus 152 e~~v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr~ag~qiq~l~~s~yk~E~ 209 (261)
..-.+.|.+.++.+.+++.+|.++..... +-..++++.-.||.++.+.+-.++.
T Consensus 241 ~~~~~~l~~~~~~~~~~i~~l~~~l~~~~----k~~~k~~~~~~q~~~~~k~~~~~~~ 294 (406)
T PF02388_consen 241 KEYLESLQEKLEKLEKEIEKLEEKLEKNP----KKKNKLKELEEQLASLEKRIEEAEE 294 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-T----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCc----chhhHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777778888888877765554 6667788888888888777766554
No 181
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=25.33 E-value=4.2e+02 Score=22.49 Aligned_cols=59 Identities=14% Similarity=0.046 Sum_probs=40.5
Q ss_pred hHHHHHHHHhhcccchhHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024845 115 AGGAIGLGSFLLKRPRHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKLE 173 (261)
Q Consensus 115 ~g~a~~ag~lll~~PRrfL~r~TlgrF~SEEall~~Ae~~v~eLr~svdl~k~Es~KL~ 173 (261)
....++..++|+-.=.+|+|.-..+-+..=+..+...-...++++..++.+..|.++.+
T Consensus 19 ~~~~~i~Flil~~iL~~~~~kpi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l 77 (173)
T PRK13460 19 VVWTLVTFLVVVLVLKKFAWDVILKALDERASGVQNDINKASELRLEAEALLKDYEARL 77 (173)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555566666788999888888877777777777777777777666666665543
No 182
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=25.13 E-value=8.1e+02 Score=25.67 Aligned_cols=108 Identities=16% Similarity=0.131 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH--HHHHHHHHHHHHHHHHHHHHHHHhhHHHHhccC
Q 024845 144 EESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRT--KLRQAGKQIQGVINSAYKIERQAAGLKDIVGEL 221 (261)
Q Consensus 144 EEall~~Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGrt--kLr~ag~qiq~l~~s~yk~E~~A~gL~d~Lr~L 221 (261)
+.-+-...+.+......+++-+..++..+.+++..+|.++..=+. ++-....+-+.+..++...+.+-..|...+
T Consensus 251 ~~Yi~~~l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~~~~~l~~ql~~l~~~~--- 327 (726)
T PRK09841 251 NNYLQQNIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQLNELTFRE--- 327 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH---
Q ss_pred CchHHHHHHHHHhHhHHHHHHHHHHHHHHHHhhhh
Q 024845 222 PRREASRFRSQVSNIASEAKRERNALTKEVSKISN 256 (261)
Q Consensus 222 P~reA~~LRseVAs~AS~vK~qR~aL~k~l~KIs~ 256 (261)
++....-.+=.=..-.++.++..|++.+.++..
T Consensus 328 --~~l~~~~~~~hP~v~~l~~~~~~L~~~~~~l~~ 360 (726)
T PRK09841 328 --AEISQLYKKDHPTYRALLEKRQTLEQERKRLNK 360 (726)
T ss_pred --HHHHHHhcccCchHHHHHHHHHHHHHHHHHHHH
No 183
>PF06717 DUF1202: Protein of unknown function (DUF1202); InterPro: IPR009592 This family consists of several hypothetical bacterial proteins of around 335 residues in length. Members of this family are found exclusively in Escherichia coli and Salmonella species and are often referred to as YggM proteins. The function of this family is unknown.
Probab=24.78 E-value=1.5e+02 Score=28.85 Aligned_cols=45 Identities=13% Similarity=0.186 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 024845 145 ESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTK 189 (261)
Q Consensus 145 Eall~~Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtk 189 (261)
.+.|+..+....+.+-+|+.++++..+|....+.++++..+=|+|
T Consensus 137 ~~rf~~Ied~~~~kK~~I~~L~~qisaLdkqi~ai~Kkid~yWgk 181 (308)
T PF06717_consen 137 NYRFNQIEDEYNRKKNKIPGLNKQISALDKQIVAINKKIDRYWGK 181 (308)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 457899999999999999999999999999999999999887765
No 184
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=24.76 E-value=3.7e+02 Score=21.58 Aligned_cols=74 Identities=22% Similarity=0.252 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh-----hHHHHhc
Q 024845 148 LSRADTKVKQLRQSIDRLKAESEKLEKVA---LVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAA-----GLKDIVG 219 (261)
Q Consensus 148 l~~Ae~~v~eLr~svdl~k~Es~KL~era---a~AE~E~~rGrtkLr~ag~qiq~l~~s~yk~E~~A~-----gL~d~Lr 219 (261)
+.....+.+...++|.......+.|.+.+ ..+-++.++-...+++-+.+-+.-++.+-|.+.-|. ++.|.||
T Consensus 27 i~~L~a~n~~q~~tI~qq~~~~~~L~~~~~~~r~~~~~~~~~~qq~r~~~e~~~e~ik~~lk~d~Ca~~~~P~~V~d~L~ 106 (110)
T PF10828_consen 27 IDRLRAENKAQAQTIQQQEDANQELKAQLQQNRQAVEEQQKREQQLRQQSEERRESIKTALKDDPCANTAVPDAVIDSLR 106 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccccCCCCHHHHHHHH
Confidence 45555667777777777777666665433 234445566666777777777777777766655443 3555555
Q ss_pred cC
Q 024845 220 EL 221 (261)
Q Consensus 220 ~L 221 (261)
.|
T Consensus 107 ~~ 108 (110)
T PF10828_consen 107 RL 108 (110)
T ss_pred Hh
Confidence 44
No 185
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=24.54 E-value=9e+02 Score=25.98 Aligned_cols=19 Identities=11% Similarity=0.163 Sum_probs=13.3
Q ss_pred HHHHHHHHhhHHHHhccCC
Q 024845 204 AYKIERQAAGLKDIVGELP 222 (261)
Q Consensus 204 ~yk~E~~A~gL~d~Lr~LP 222 (261)
+-+..+++..++..|++.+
T Consensus 579 l~~a~~~~~~~i~~lk~~~ 597 (782)
T PRK00409 579 IKEAKKEADEIIKELRQLQ 597 (782)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 4455667888888888753
No 186
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=24.53 E-value=8.4e+02 Score=25.65 Aligned_cols=52 Identities=19% Similarity=0.174 Sum_probs=25.2
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhccCCchHHHHHHHH
Q 024845 181 DELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIVGELPRREASRFRSQ 232 (261)
Q Consensus 181 ~E~~rGrtkLr~ag~qiq~l~~s~yk~E~~A~gL~d~Lr~LP~reA~~LRse 232 (261)
.|-.|=+..|..+.+++......=.+.+++...|+..|.-+-.-+-.+++.+
T Consensus 176 ~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~ 227 (546)
T KOG0977|consen 176 AENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEE 227 (546)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHH
Confidence 3333344444444455554444445555666666665554444444444333
No 187
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=24.42 E-value=5.6e+02 Score=23.61 Aligned_cols=80 Identities=13% Similarity=0.152 Sum_probs=44.0
Q ss_pred HhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 024845 136 NTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLK 215 (261)
Q Consensus 136 ~TlgrF~SEEall~~Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr~ag~qiq~l~~s~yk~E~~A~gL~ 215 (261)
..+.-+.+|+..+....+..+.|.+.=..+-.|++-...-.-.=|..++.-++.....-..|+++-......-.....+.
T Consensus 22 ~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R 101 (230)
T PF10146_consen 22 QEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELR 101 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777777777777777766666666665555555555555544444444444444444443333333333333
No 188
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=24.32 E-value=6.7e+02 Score=24.44 Aligned_cols=32 Identities=16% Similarity=0.219 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024845 150 RADTKVKQLRQSIDRLKAESEKLEKVALVAED 181 (261)
Q Consensus 150 ~Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~ 181 (261)
..+...+.+.+.++.++.+.+.+.......++
T Consensus 169 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 200 (457)
T TIGR01000 169 AAEKTKAQLDQQISKTDQKLQDYQALKNAISN 200 (457)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44555666666666666666666555544333
No 189
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=24.31 E-value=4.3e+02 Score=22.15 Aligned_cols=52 Identities=15% Similarity=0.344 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHhccCCchHHHHHHHHHhHhHHHHHHH
Q 024845 191 RQAGKQIQGVINSAYKIERQAAGLKDIVGELPRREASRFRSQVSNIASEAKRE 243 (261)
Q Consensus 191 r~ag~qiq~l~~s~yk~E~~A~gL~d~Lr~LP~reA~~LRseVAs~AS~vK~q 243 (261)
+....++..|-..+-..+.+=..++.-|++ -+-+.-+||.+|.+|-.-.|.|
T Consensus 64 ~~~~~~~~~L~~el~~l~~ry~t~LellGE-K~E~veEL~~Dv~DlK~myr~Q 115 (120)
T PF12325_consen 64 RALKKEVEELEQELEELQQRYQTLLELLGE-KSEEVEELRADVQDLKEMYREQ 115 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHHHHHHH
Confidence 555566666666677777778888888887 4578889999999997666654
No 190
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=24.29 E-value=1.3e+02 Score=25.84 Aligned_cols=29 Identities=17% Similarity=0.403 Sum_probs=27.5
Q ss_pred chHHHHHHHHHHHHHHHHhHHHHHHHHhh
Q 024845 34 WIDNAVQQVMIYRKIVEESIDSAIEASRS 62 (261)
Q Consensus 34 w~~~a~~qa~~~qk~~~~s~d~ai~a~~s 62 (261)
|++.-++--+.+++-+-+++|.+|++.++
T Consensus 64 fvEKTi~til~LheKvl~aKdETI~~lk~ 92 (126)
T PF13118_consen 64 FVEKTIGTILNLHEKVLDAKDETIEALKN 92 (126)
T ss_pred hhhhHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 99999988999999999999999999998
No 191
>PRK01156 chromosome segregation protein; Provisional
Probab=24.19 E-value=8.7e+02 Score=25.68 Aligned_cols=28 Identities=18% Similarity=0.306 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024845 145 ESLLSRADTKVKQLRQSIDRLKAESEKL 172 (261)
Q Consensus 145 Eall~~Ae~~v~eLr~svdl~k~Es~KL 172 (261)
..-+.....+++++...++.++.+...+
T Consensus 635 ~~~l~~~~~~i~~~~~~i~~l~~~i~~l 662 (895)
T PRK01156 635 YNEIQENKILIEKLRGKIDNYKKQIAEI 662 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444445555544444444433
No 192
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=24.17 E-value=3.6e+02 Score=21.28 Aligned_cols=70 Identities=17% Similarity=0.258 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHh
Q 024845 145 ESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIV 218 (261)
Q Consensus 145 Eall~~Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr~ag~qiq~l~~s~yk~E~~A~gL~d~L 218 (261)
|.+=..+..++.+|...+..++..+..|..+- ++|+.=..+|-+-..++..|...++..+.-...|=..+
T Consensus 27 e~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~----~~l~~~l~~Id~Ie~~V~~LE~~v~~LD~ysk~LE~k~ 96 (99)
T PF10046_consen 27 ENMNKATSLKYKKMKDIAAGLEKNLEDLNQKY----EELQPYLQQIDQIEEQVTELEQTVYELDEYSKELESKF 96 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45556677788888888888888888777654 34444445555555566666666665555554444333
No 193
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=24.15 E-value=3e+02 Score=20.34 Aligned_cols=17 Identities=12% Similarity=0.233 Sum_probs=8.9
Q ss_pred hHHHHHHHHhhcccchh
Q 024845 115 AGGAIGLGSFLLKRPRH 131 (261)
Q Consensus 115 ~g~a~~ag~lll~~PRr 131 (261)
+++++++|+|+-|.+.+
T Consensus 9 a~~Ga~~glL~aP~sG~ 25 (74)
T PF12732_consen 9 AAAGAAAGLLFAPKSGK 25 (74)
T ss_pred HHHHHHHHHHhCCCCcH
Confidence 34445555666565543
No 194
>PF02944 BESS: BESS motif; InterPro: IPR004210 The BESS domain has been named after the three proteins that originally defined the domain: BEAF (Boundary element associated factor 32) [], Suvar(3)7 [] and Stonewall []). The BESS domain is 40 amino acid residues long and is predicted to be composed of three alpha helices, as such it might be related to the myb/SANT HTH domain. The BESS domain directs a variety of protein-protein interactions, including interactions with itself, with Dorsal, and with a TBP-associated factor. It is found in a single copy in Drosophila proteins and is often associated with the MADF domain [, , ]. Proteins known to contain a BESS domain include: Drosophila Boundary element associated factor 32 (BEAF-32). Drosophila Suppressor of variegation protein 3-7 (Su(var)3-7), which could play a role in chromosome condensation. Drosophila Ravus, which is homologous to the C-terminal part of Su(var)3-7 []. Drosophila Stonewall (Stwl), a putative transcription factor required for maintenance of female germline stem cells as well as oocyte differentiation. Drosophila Adf-1, a transcription factor first identified on the basis of its interaction with the alcohol dehydrogenase promoter but that binds the promoters of a diverse group of genes []. Drosophila Dorsal-interacting protein 3 (Dip3). It functions both as an activator to bind DNA in a sequence specific manner and a coactivator to stimulate synergistic activation by Dorsal and Twist []. ; GO: 0003677 DNA binding
Probab=23.67 E-value=78 Score=20.92 Aligned_cols=26 Identities=15% Similarity=0.354 Sum_probs=22.7
Q ss_pred hhHHHHhccCCchHHHHHHHHHhHhH
Q 024845 212 AGLKDIVGELPRREASRFRSQVSNIA 237 (261)
Q Consensus 212 ~gL~d~Lr~LP~reA~~LRseVAs~A 237 (261)
-+|+..++.||.++-..+|.+|..+-
T Consensus 9 ~Sl~p~~k~L~~~~k~~~k~~i~~ll 34 (37)
T PF02944_consen 9 LSLLPHMKRLPPKQKLKFKMKILQLL 34 (37)
T ss_pred HHhHHHHHhCCHHHHHHHHHHHHHHH
Confidence 46788899999999999999998763
No 195
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=23.65 E-value=6.1e+02 Score=23.70 Aligned_cols=25 Identities=24% Similarity=0.279 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 024845 161 SIDRLKAESEKLEKVALVAEDELIR 185 (261)
Q Consensus 161 svdl~k~Es~KL~eraa~AE~E~~r 185 (261)
.+..++.+.+..+..+..|+.+|.|
T Consensus 107 ~l~~~~~~l~~a~~~l~~a~~~~~r 131 (370)
T PRK11578 107 TLMELRAQRQQAEAELKLARVTLSR 131 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444555555554
No 196
>PRK10698 phage shock protein PspA; Provisional
Probab=23.49 E-value=5.5e+02 Score=23.16 Aligned_cols=99 Identities=14% Similarity=0.158 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhccCCchHH
Q 024845 147 LLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIVGELPRREA 226 (261)
Q Consensus 147 ll~~Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr~ag~qiq~l~~s~yk~E~~A~gL~d~Lr~LP~reA 226 (261)
++.+++-=.+-|++.+..+..++.++...+ -+-.+.-+...+++...-..+-+-|.+|..-+..=++==-++|
T Consensus 18 ~ldkaEDP~k~l~q~i~em~~~l~~~r~al-------A~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~A 90 (222)
T PRK10698 18 LLEKAEDPQKLVRLMIQEMEDTLVEVRSTS-------ARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAA 90 (222)
T ss_pred HHHhhcCHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 455555555556666666665555552222 2222333444555555555666666666655543333223555
Q ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHH
Q 024845 227 SRFRSQVSNIASEAKRERNALTKEVS 252 (261)
Q Consensus 227 ~~LRseVAs~AS~vK~qR~aL~k~l~ 252 (261)
+.-+.+++..+..++.+.......+.
T Consensus 91 L~~K~~~~~~~~~l~~~~~~~~~~~~ 116 (222)
T PRK10698 91 LIEKQKLTDLIATLEHEVTLVDETLA 116 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555544444443
No 197
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=23.46 E-value=6e+02 Score=23.55 Aligned_cols=50 Identities=30% Similarity=0.307 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 024845 168 ESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDI 217 (261)
Q Consensus 168 Es~KL~eraa~AE~E~~rGrtkLr~ag~qiq~l~~s~yk~E~~A~gL~d~ 217 (261)
++++|.+.....|.++..-+..+++|...-...+..-..+-+...+|+..
T Consensus 33 ~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~LLqR 82 (207)
T PF05546_consen 33 EIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNELLQR 82 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44555555555555555555555555555555555555555555555543
No 198
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=23.31 E-value=4.5e+02 Score=22.03 Aligned_cols=75 Identities=21% Similarity=0.172 Sum_probs=45.5
Q ss_pred cchHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhChh
Q 024845 33 PWIDNAVQQVMIYRKIVEESIDSAIEASRSRLSQTRLTASVHFQQTLDYLQDVKSEYAAYEDAAVGKVKEGIHVAASHPF 112 (261)
Q Consensus 33 ~w~~~a~~qa~~~qk~~~~s~d~ai~a~~sr~s~~~~ts~~h~~~~~~~l~~~~sey~~yEd~~f~kiKegv~~A~~hP~ 112 (261)
.|=+.|...+.-+.-. .+++.+-++.||+ +++..+.+++++.... -|+-+=..+=++| +
T Consensus 30 ssg~~a~~e~~~lR~r----~~~~Lk~~r~rl~---~~~d~v~~~sk~a~~~-------tD~yV~e~PWq~V-------G 88 (104)
T COG4575 30 SSGSLAGDEAEELRSK----AESALKEARDRLG---DTGDAVVQRSKAAADA-------TDDYVRENPWQGV-------G 88 (104)
T ss_pred hcccchhhHHHHHHHH----HHHHHHHHHHHHH---hhhhHHHHHHHHHHHH-------HHHHHHcCCchHH-------H
Confidence 3444444444444433 3455566676655 4556677777655443 2444445777777 5
Q ss_pred hhhHHHHHHHHhhccc
Q 024845 113 ITAGGAIGLGSFLLKR 128 (261)
Q Consensus 113 ~a~g~a~~ag~lll~~ 128 (261)
|++|++..+|+|+=||
T Consensus 89 vaAaVGlllGlLlsRR 104 (104)
T COG4575 89 VAAAVGLLLGLLLSRR 104 (104)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 6789999999998654
No 199
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=23.19 E-value=8.9e+02 Score=25.44 Aligned_cols=105 Identities=18% Similarity=0.284 Sum_probs=59.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhccCC
Q 024845 143 SEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIVGELP 222 (261)
Q Consensus 143 SEEall~~Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr~ag~qiq~l~~s~yk~E~~A~gL~d~Lr~LP 222 (261)
+++......++.+.+|+ .+++.|.......+.++....+.+.+.-.++...-...-..|.+-.-..-.+.-||
T Consensus 318 ~~~~~~~~~~~el~~l~-------~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~ 390 (594)
T PF05667_consen 318 TEEDEQEEQEQELEELQ-------EQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLP 390 (594)
T ss_pred chhhhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44444444555555554 44555555555566677777777777766666666665555555543333333345
Q ss_pred chHH--HHHH-------HHHhHhHHHHHHHHHHHHHHHHhh
Q 024845 223 RREA--SRFR-------SQVSNIASEAKRERNALTKEVSKI 254 (261)
Q Consensus 223 ~reA--~~LR-------seVAs~AS~vK~qR~aL~k~l~KI 254 (261)
-.+. .+|. ..+..|+.+.-.+|.-|...+...
T Consensus 391 d~e~ni~kL~~~v~~s~~rl~~L~~qWe~~R~pL~~e~r~l 431 (594)
T PF05667_consen 391 DAEENIAKLQALVEASEQRLVELAQQWEKHRAPLIEEYRRL 431 (594)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4322 2233 456677777788888887766544
No 200
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=23.11 E-value=4e+02 Score=21.38 Aligned_cols=54 Identities=20% Similarity=0.299 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHH
Q 024845 147 LLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDE---LIRGRTKLRQAGKQIQGV 200 (261)
Q Consensus 147 ll~~Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~E---~~rGrtkLr~ag~qiq~l 200 (261)
+|..-+.||...=.+|.+++-|+.-|.+.-.....| ...||..|.+.-.+++.-
T Consensus 5 vleqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E 61 (79)
T PRK15422 5 VFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQ 61 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 677889999999999999999999998775555554 556888888888888765
No 201
>COG4283 Uncharacterized conserved protein [Function unknown]
Probab=23.09 E-value=1.3e+02 Score=27.20 Aligned_cols=52 Identities=15% Similarity=0.142 Sum_probs=40.9
Q ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHhhHHHH
Q 024845 139 RLFASEESLLSRADTKVKQLRQSIDRLKAESEKLE------KVALVAEDELIRGRTKL 190 (261)
Q Consensus 139 grF~SEEall~~Ae~~v~eLr~svdl~k~Es~KL~------eraa~AE~E~~rGrtkL 190 (261)
+|.+|.|.|...++.+.+-|-..+|-++.|.+.+. ||--.----++.||+.|
T Consensus 2 ~r~~sKeEL~~~~~~syeKl~~li~~i~ee~k~~~f~f~drdkn~rd~l~hl~eWh~L 59 (170)
T COG4283 2 RRYTSKEELKIAIEESYEKLLSLIESISEELKDTRFDFVDRDKNPRDNLAHLVEWHNL 59 (170)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHhccHHHhcCCCChhcccCCHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999987652 23333333467888776
No 202
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=23.08 E-value=1.3e+03 Score=27.35 Aligned_cols=193 Identities=15% Similarity=0.118 Sum_probs=110.5
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHh------HHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024845 29 EDGNPWIDNAVQQVMIYRKIVEES------IDSAIEASRSRLSQTRLTASVHFQQTLDYLQDVKSEYAAYEDAAVGKVKE 102 (261)
Q Consensus 29 ~~~~~w~~~a~~qa~~~qk~~~~s------~d~ai~a~~sr~s~~~~ts~~h~~~~~~~l~~~~sey~~yEd~~f~kiKe 102 (261)
.++.+-.+.|+.-|.-.+-.+.+. +-+.++.++-+-|+.++....-|-++-.+...+.+--+..++ +|..|++
T Consensus 1404 ~Ga~t~A~~A~~~A~~~~~~l~~~~ae~eq~~~~v~ea~~~aseA~~~Aq~~~~~a~as~~q~~~s~~el~~-Li~~v~~ 1482 (1758)
T KOG0994|consen 1404 RGAVTRAGGALLMAGDADTQLRSKLAEAEQTLSMVREAKLSASEAQQSAQRALEQANASRSQMEESNRELRN-LIQQVRD 1482 (1758)
T ss_pred cchhcccchHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 345555555555554444444333 334555666666666666666666665555555555554444 3444554
Q ss_pred hHHHhhhChhhhhHHHHHHHHhhcccc---------------------hhHHHHHhhhhhcCHHHHHH---HHHHHHHHH
Q 024845 103 GIHVAASHPFITAGGAIGLGSFLLKRP---------------------RHFLYYNTLRLFASEESLLS---RADTKVKQL 158 (261)
Q Consensus 103 gv~~A~~hP~~a~g~a~~ag~lll~~P---------------------RrfL~r~TlgrF~SEEall~---~Ae~~v~eL 158 (261)
=+.-=...|...=.+|.-+--+-||-+ -.+| ++|.|-..-=|.|++ +|..+.+.+
T Consensus 1483 Flt~~~adp~si~~vA~~vL~l~lp~tpeqi~~L~~~I~e~v~sL~nVd~IL-~~T~~di~ra~~L~s~A~~a~~~A~~v 1561 (1758)
T KOG0994|consen 1483 FLTQPDADPDSIEEVAEEVLALELPLTPEQIQQLTGEIQERVASLPNVDAIL-SRTKGDIARAENLQSEAERARSRAEDV 1561 (1758)
T ss_pred HhcCCCCCHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcccHHHHH-HhhhhhHHHHHHHHHHHHHHHhHHHHH
Confidence 444334444444444433333333322 1222 234443333333433 334455566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhccCCc
Q 024845 159 RQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIVGELPR 223 (261)
Q Consensus 159 r~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr~ag~qiq~l~~s~yk~E~~A~gL~d~Lr~LP~ 223 (261)
+.++|.+..-++--.+.-..|++-++-.-+.++.|+.-|-.+-.+++..|+.|..--..|++|-+
T Consensus 1562 ~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~ 1626 (1758)
T KOG0994|consen 1562 KGQAEDVVEALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELET 1626 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677666666666666667777777778888888888888888999999988887777777765
No 203
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=23.07 E-value=3.9e+02 Score=21.31 Aligned_cols=31 Identities=19% Similarity=0.426 Sum_probs=16.1
Q ss_pred HHHHHhhHHHHhccCCchHHHHHHHHHhHhHHHHH
Q 024845 207 IERQAAGLKDIVGELPRREASRFRSQVSNIASEAK 241 (261)
Q Consensus 207 ~E~~A~gL~d~Lr~LP~reA~~LRseVAs~AS~vK 241 (261)
++..+..|.+.| ......|++.+..+..+++
T Consensus 164 l~~~~~~l~~~l----~~~~~~l~~~~~~~~~~~~ 194 (202)
T PF01442_consen 164 LEEKAEELKETL----DQRIEELESSIDRISEDIE 194 (202)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 344444555544 3445556666665555554
No 204
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=22.98 E-value=2.2e+02 Score=21.09 Aligned_cols=21 Identities=24% Similarity=0.450 Sum_probs=9.9
Q ss_pred HHHHhhHHHHHHHHHHHHHHH
Q 024845 181 DELIRGRTKLRQAGKQIQGVI 201 (261)
Q Consensus 181 ~E~~rGrtkLr~ag~qiq~l~ 201 (261)
.++..-+.++++...++..++
T Consensus 59 ~~~~~~r~~~~~~r~~l~~ll 79 (125)
T PF13801_consen 59 QEMRALRQELRAARQELRALL 79 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555544443
No 205
>PRK02195 V-type ATP synthase subunit D; Provisional
Probab=22.90 E-value=4.5e+02 Score=23.47 Aligned_cols=16 Identities=25% Similarity=0.532 Sum_probs=11.9
Q ss_pred cccCCCCcchHHHHHH
Q 024845 26 QSLEDGNPWIDNAVQQ 41 (261)
Q Consensus 26 ~~~~~~~~w~~~a~~q 41 (261)
-++-++.||+|+|+..
T Consensus 109 Y~~~~t~~~lD~a~~~ 124 (201)
T PRK02195 109 YSLLNTPIWVDTGIEL 124 (201)
T ss_pred cCCccCCHHHHHHHHH
Confidence 4555688999998744
No 206
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=22.66 E-value=92 Score=22.16 Aligned_cols=12 Identities=25% Similarity=-0.050 Sum_probs=5.2
Q ss_pred hhHHHHHHHHhh
Q 024845 114 TAGGAIGLGSFL 125 (261)
Q Consensus 114 a~g~a~~ag~ll 125 (261)
+.++++.+|+++
T Consensus 27 ~f~~G~llg~l~ 38 (68)
T PF06305_consen 27 AFLLGALLGWLL 38 (68)
T ss_pred HHHHHHHHHHHH
Confidence 334444444443
No 207
>KOG1268 consensus Glucosamine 6-phosphate synthetases, contain amidotransferase and phosphosugar isomerase domains [Cell wall/membrane/envelope biogenesis]
Probab=22.47 E-value=37 Score=35.74 Aligned_cols=44 Identities=25% Similarity=0.416 Sum_probs=37.1
Q ss_pred HHHHHHHHHhhHHHHhccCCc--hHHHHHHHHHhHhHHHHHHHHHHH
Q 024845 203 SAYKIERQAAGLKDIVGELPR--REASRFRSQVSNIASEAKRERNAL 247 (261)
Q Consensus 203 s~yk~E~~A~gL~d~Lr~LP~--reA~~LRseVAs~AS~vK~qR~aL 247 (261)
++++.||+ ...+|.|..||. +|-++|-.+|-++|.+++.|++.|
T Consensus 485 ~is~~~RR-~eIi~gL~~l~~~ikevL~l~~~i~~la~~l~~~~slL 530 (670)
T KOG1268|consen 485 RVSKQERR-KEIIDGLKDLPSQIKEVLELDPKIKDLAKELKDHKSLL 530 (670)
T ss_pred hhhHHHHH-HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHhccceEE
Confidence 35666665 468999999999 999999999999999999998754
No 208
>TIGR00984 3a0801s03tim44 mitochondrial import inner membrane, translocase subunit. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tim proteins.
Probab=22.27 E-value=4.1e+02 Score=26.51 Aligned_cols=23 Identities=35% Similarity=0.481 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 024845 152 DTKVKQLRQSIDRLKAESEKLEK 174 (261)
Q Consensus 152 e~~v~eLr~svdl~k~Es~KL~e 174 (261)
-++-+||+..+..+..|+.||.|
T Consensus 7 ~~kskE~~enik~l~~~~~~~~e 29 (378)
T TIGR00984 7 LQKSQELQESIKQLQDRSGKLNE 29 (378)
T ss_pred HHhhHHHHHHHHHHHHHHhhhhh
Confidence 36789999999999999999974
No 209
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=22.11 E-value=2.4e+02 Score=21.74 Aligned_cols=32 Identities=19% Similarity=0.359 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024845 152 DTKVKQLRQSIDRLKAESEKLEKVALVAEDEL 183 (261)
Q Consensus 152 e~~v~eLr~svdl~k~Es~KL~eraa~AE~E~ 183 (261)
..+++.|+..++.++.+..++.++...++.++
T Consensus 69 ~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~ 100 (104)
T PF13600_consen 69 SPELKELEEELEALEDELAALQDEIQALEAQI 100 (104)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44788888888888888888888887777654
No 210
>smart00435 TOPEUc DNA Topoisomerase I (eukaryota). DNA Topoisomerase I (eukaryota), DNA topoisomerase V, Vaccina virus topoisomerase, Variola virus topoisomerase, Shope fibroma virus topoisomeras
Probab=22.08 E-value=5.9e+02 Score=25.64 Aligned_cols=27 Identities=30% Similarity=0.270 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHh
Q 024845 191 RQAGKQIQGVINSAYKIERQAAGLKDIV 218 (261)
Q Consensus 191 r~ag~qiq~l~~s~yk~E~~A~gL~d~L 218 (261)
...+++|..+-..+-++|.|+.+ +|+.
T Consensus 339 ~~~~k~~~~~~~~i~k~~~q~~~-ke~n 365 (391)
T smart00435 339 EKKKKQIERLEERIEKLEVQATD-KEEN 365 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-hhcC
Confidence 34457788888888888887764 3433
No 211
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=21.76 E-value=5.1e+02 Score=22.12 Aligned_cols=59 Identities=15% Similarity=0.098 Sum_probs=38.2
Q ss_pred hhhHHHHHHHHhhcccchhHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024845 113 ITAGGAIGLGSFLLKRPRHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEK 171 (261)
Q Consensus 113 ~a~g~a~~ag~lll~~PRrfL~r~TlgrF~SEEall~~Ae~~v~eLr~svdl~k~Es~K 171 (261)
.+....++..++|+--=.+|||+-..+-+..=+..+...-...++.+...+.+..|.++
T Consensus 19 ~t~~~~iInFliL~~lL~~~l~~pi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~ 77 (173)
T PRK13453 19 GTVIVTVLTFIVLLALLKKFAWGPLKDVMDKRERDINRDIDDAEQAKLNAQKLEEENKQ 77 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555666666677899998888877776666666555556655555555555443
No 212
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=21.74 E-value=1e+03 Score=25.58 Aligned_cols=26 Identities=15% Similarity=0.289 Sum_probs=14.7
Q ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHH
Q 024845 140 LFASEESLLSRADTKVKQLRQSIDRL 165 (261)
Q Consensus 140 rF~SEEall~~Ae~~v~eLr~svdl~ 165 (261)
|+-=.+.++.+|..-..+....++.+
T Consensus 491 ~~Glp~~ii~~A~~~~~~~~~~~~~l 516 (771)
T TIGR01069 491 RYGIPHFIIEQAKTFYGEFKEEINVL 516 (771)
T ss_pred HhCcCHHHHHHHHHHHHhhHHHHHHH
Confidence 34445677777776665555444433
No 213
>PF04588 HIG_1_N: Hypoxia induced protein conserved region; InterPro: IPR007667 The hypoxia induced gene 1 (HIG1) or hypoglycemia/hypoxia inducible mitochondrial protein (HIMP1) is up-regulated by stresses of the microenvironment such as low oxygen or low glucose conditions. HIG1 is a mitochondrial inner membrane protein, which is ubiquitously expressed. It is predicted to be an integral membrane protein consisting of two hydrophobic helices, 21-23 residues in length that might tend to form a hairpin-like loop across the bilayer. HIG1 could be implied in apoptotic or cytoprotective signals. HIG1 is a member of a well conserved eukaryote protein family. The predicted transmembrane helice (TMH) and loop regions represent the most highly conserved regions in these proteins [, ]. The profile we developed covers the predicted TMH and loop regions. This domain is found in proteins thought to be involved in the response to hypoxia []. It is also found in altered inheritance of mitochondria proteins.; PDB: 2LOM_A 2LON_A.
Probab=21.45 E-value=60 Score=23.24 Aligned_cols=19 Identities=16% Similarity=0.370 Sum_probs=12.6
Q ss_pred hhhChhhhhHHHHHHHHhh
Q 024845 107 AASHPFITAGGAIGLGSFL 125 (261)
Q Consensus 107 A~~hP~~a~g~a~~ag~ll 125 (261)
.++||.+..|++.+++.+.
T Consensus 1 ~ke~plv~ig~~~~~~~l~ 19 (54)
T PF04588_consen 1 FKENPLVPIGMLATVGALA 19 (54)
T ss_dssp S-S--CHHHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHH
Confidence 3689999999888877754
No 214
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=21.28 E-value=4.8e+02 Score=21.60 Aligned_cols=33 Identities=21% Similarity=0.261 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024845 145 ESLLSRADTKVKQLRQSIDRLKAESEKLEKVAL 177 (261)
Q Consensus 145 Eall~~Ae~~v~eLr~svdl~k~Es~KL~eraa 177 (261)
+.-|..++.+.+.+|+.|+..=..+..|.+.+.
T Consensus 31 ~~eL~~~k~el~~yk~~V~~HF~~ta~Ll~~l~ 63 (128)
T PF06295_consen 31 EQELEQAKQELEQYKQEVNDHFAQTAELLDNLT 63 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666677766666666666665544
No 215
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=21.27 E-value=4e+02 Score=20.75 Aligned_cols=45 Identities=18% Similarity=0.296 Sum_probs=28.7
Q ss_pred chhHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024845 129 PRHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKLE 173 (261)
Q Consensus 129 PRrfL~r~TlgrF~SEEall~~Ae~~v~eLr~svdl~k~Es~KL~ 173 (261)
=-+|+|....+-|..=++-+.+....+++++..++.+..|.++.+
T Consensus 16 l~~~~~~pi~~~l~~R~~~I~~~~~~a~~~~~ea~~~~~e~~~~l 60 (132)
T PF00430_consen 16 LNKFLYKPIKKFLDERKAKIQSELEEAEELKEEAEQLLAEYEEKL 60 (132)
T ss_dssp HHHHTHHHHHHHCS--S-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 356788888777777777777777777777776666666555443
No 216
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=21.24 E-value=3.1e+02 Score=21.91 Aligned_cols=37 Identities=30% Similarity=0.411 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024845 148 LSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELI 184 (261)
Q Consensus 148 l~~Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~E~~ 184 (261)
..-++++.+.|+..++.+.+++.++.+.+..-+..+.
T Consensus 89 ~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~ 125 (129)
T cd00584 89 IEFLDKKIEELTKQIEKLQKELAKLKDQINTLEAELQ 125 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3778899999999999999999999888877666554
No 217
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=21.19 E-value=3.6e+02 Score=21.85 Aligned_cols=35 Identities=31% Similarity=0.340 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024845 150 RADTKVKQLRQSIDRLKAESEKLEKVALVAEDELI 184 (261)
Q Consensus 150 ~Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~E~~ 184 (261)
+-+.+|.+|...++.+..|...|..+...+.+|.+
T Consensus 46 rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~ 80 (87)
T PF12709_consen 46 RWEKKVDELENENKALKRENEQLKKKLDTEREEKQ 80 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777777777777777777766666655544
No 218
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=21.14 E-value=9.5e+02 Score=29.02 Aligned_cols=77 Identities=16% Similarity=0.167 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhccC
Q 024845 145 ESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIVGEL 221 (261)
Q Consensus 145 Eall~~Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr~ag~qiq~l~~s~yk~E~~A~gL~d~Lr~L 221 (261)
+-+++.+-..++++...+..+..|...+.....-.|+++..-.+.++.--+|++.+.-.+.+.-+++.-|+..|+++
T Consensus 425 ~p~lk~qr~~~e~~~~~~~~l~~el~~~~q~~~~~e~~~~~l~~~~~~~~renk~l~~~~sdlsrqv~~Ll~el~e~ 501 (1822)
T KOG4674|consen 425 APILKEQRSELERMQETKAELSEELDFSNQKIQKLEKELESLKKQLNDLERENKLLEQQISDLSRQVNVLLLELDEL 501 (1822)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55778888888899999999999999999999999999999999999999999999999999999998888877654
No 219
>PLN03223 Polycystin cation channel protein; Provisional
Probab=20.99 E-value=2.4e+02 Score=33.11 Aligned_cols=55 Identities=22% Similarity=0.257 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 024845 161 SIDRLKAESEKL---EKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLK 215 (261)
Q Consensus 161 svdl~k~Es~KL---~eraa~AE~E~~rGrtkLr~ag~qiq~l~~s~yk~E~~A~gL~ 215 (261)
.+|.+.+|...| ++|+...+.++.-|..|+.+-.+++-++-+.+...|.+--|++
T Consensus 1572 ~~~~l~~e~~~L~~s~erL~~~Q~~l~egQ~k~~~~Q~~la~~q~kl~~l~~k~~~~~ 1629 (1634)
T PLN03223 1572 DGDVLEKEVDQLQQSLERLAEVQRELAEGQVKVIEGQKQMAERQSRLSQLENKILGVL 1629 (1634)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHHHHHHHHhhhcccc
Confidence 356667776666 5888999999999999999999999999888888887766554
No 220
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=20.89 E-value=4.1e+02 Score=29.06 Aligned_cols=89 Identities=19% Similarity=0.215 Sum_probs=66.6
Q ss_pred HhHHHHHHHHhhhhhhhhhhhhhHHHHHHHH--HHHHHHHHHHHHHHHHHhhhhhHHHhhhChhhhhHHHHHHHHhhccc
Q 024845 51 ESIDSAIEASRSRLSQTRLTASVHFQQTLDY--LQDVKSEYAAYEDAAVGKVKEGIHVAASHPFITAGGAIGLGSFLLKR 128 (261)
Q Consensus 51 ~s~d~ai~a~~sr~s~~~~ts~~h~~~~~~~--l~~~~sey~~yEd~~f~kiKegv~~A~~hP~~a~g~a~~ag~lll~~ 128 (261)
++..+++++++|++..++++-..-..+.|-. ...+.+.=..+-++|+..--+.+.-.-.+|......++.+--|||++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (944)
T PRK12779 16 EQARSTLESSRSELEELQQSEAVGVFQKQLALLQKRLLNDPASLRNMFIADGTQAIVWEFQQPELGEAFTTTLWELLLRG 95 (944)
T ss_pred HHHhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHHHHHHHHhcCCcCHHHHHHHHHHHHcC
Confidence 4556788999999999998876655544432 34566666778888887666666667778888888888888888887
Q ss_pred c------hhHHHHHhhh
Q 024845 129 P------RHFLYYNTLR 139 (261)
Q Consensus 129 P------RrfL~r~Tlg 139 (261)
- -||||+--|+
T Consensus 96 ~~~~~~~~~~~~~~~~~ 112 (944)
T PRK12779 96 DDMSIILQRFIWALPLK 112 (944)
T ss_pred CcHHHHHHHHHHhCchh
Confidence 5 5899976654
No 221
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=20.85 E-value=7.2e+02 Score=25.32 Aligned_cols=63 Identities=19% Similarity=0.261 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 024845 147 LLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIER 209 (261)
Q Consensus 147 ll~~Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr~ag~qiq~l~~s~yk~E~ 209 (261)
=+..-++++.+-++.-..+..+++.++.....-+.++++--.+|..-.++|..+-..+-+.|.
T Consensus 46 ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~ 108 (420)
T COG4942 46 EIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEV 108 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHH
Confidence 344444455555555555555555555555555555555555555555566555555555443
No 222
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=20.85 E-value=1.1e+03 Score=25.54 Aligned_cols=26 Identities=23% Similarity=0.234 Sum_probs=19.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024845 69 LTASVHFQQTLDYLQDVKSEYAAYEDAAV 97 (261)
Q Consensus 69 ~ts~~h~~~~~~~l~~~~sey~~yEd~~f 97 (261)
..|..|=+ |.|..+...|++|+..|-
T Consensus 337 ~~~ddH~R---DALAAA~kAY~~yk~kl~ 362 (652)
T COG2433 337 SVSDDHER---DALAAAYKAYLAYKPKLE 362 (652)
T ss_pred CCCCchHH---HHHHHHHHHHHHHHHHHH
Confidence 34455654 668888899999999765
No 223
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=20.82 E-value=6.4e+02 Score=25.87 Aligned_cols=26 Identities=4% Similarity=-0.037 Sum_probs=14.2
Q ss_pred CCcchHHHHHHHHHHHHHHHHhHHHH
Q 024845 31 GNPWIDNAVQQVMIYRKIVEESIDSA 56 (261)
Q Consensus 31 ~~~w~~~a~~qa~~~qk~~~~s~d~a 56 (261)
..||.-+-++.+++-+....++++..
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f 98 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQF 98 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34454444455666666666665543
No 224
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=20.70 E-value=1.4e+03 Score=26.73 Aligned_cols=118 Identities=13% Similarity=0.215 Sum_probs=75.0
Q ss_pred hhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHhhH---HHHHHH----HHHHHHHH
Q 024845 137 TLRLFASEESLLSRADTKVKQLRQSIDRLKAESEK--------LEKVALVAEDELIRGR---TKLRQA----GKQIQGVI 201 (261)
Q Consensus 137 TlgrF~SEEall~~Ae~~v~eLr~svdl~k~Es~K--------L~eraa~AE~E~~rGr---tkLr~a----g~qiq~l~ 201 (261)
+..+...-...+..++...++.+...+..++|-.. +.+++......+.--. .+|-.. ..++.++.
T Consensus 332 ~~~ki~~~~~~~~~~~e~lk~~~ek~~~e~~~~~~k~e~~~~~~~e~~~~~kn~~~~~k~~~~~~e~~~vk~~E~lK~~~ 411 (1293)
T KOG0996|consen 332 SRAKIAEMQEELEKIEEGLKDENEKFDIESNEEVEKNEAVKKEIKERAKELKNKFESLKKKFQDLEREDVKREEKLKRLT 411 (1293)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777788888888888888888866555433 3455555552222222 222111 23455565
Q ss_pred HHHHHHHHH---HhhHHHHhccCCc---hHHHHHHHHHhHhHHHHHHHHHHHHHHHHhh
Q 024845 202 NSAYKIERQ---AAGLKDIVGELPR---REASRFRSQVSNIASEAKRERNALTKEVSKI 254 (261)
Q Consensus 202 ~s~yk~E~~---A~gL~d~Lr~LP~---reA~~LRseVAs~AS~vK~qR~aL~k~l~KI 254 (261)
+.+-|.|++ +..=++++..+|. .+-....+++..+--.+...+.-|++...++
T Consensus 412 ~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l 470 (1293)
T KOG0996|consen 412 SKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSL 470 (1293)
T ss_pred HHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666654 4555677888887 4556777999999888888888877765543
No 225
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=20.53 E-value=4.2e+02 Score=20.65 Aligned_cols=42 Identities=24% Similarity=0.344 Sum_probs=29.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024845 143 SEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELI 184 (261)
Q Consensus 143 SEEall~~Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~E~~ 184 (261)
+-+.-..-.+++.+.++..++.+.+++.++.+....-+..|.
T Consensus 84 ~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~ 125 (129)
T cd00890 84 SLEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQ 125 (129)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445777777888888888888887777777666555554
No 226
>cd00089 HR1 Protein kinase C-related kinase homology region 1 domain; also known as the ACC (antiparallel coiled-coil) finger domain or Rho-binding domain. Found in vertebrate PRK1 and yeast PKC1 protein kinases C; those found in rhophilin bind RhoGTP; those in PRK1 bind RhoA and RhoB. Rho family members function as molecular switches, cycling between inactive and active forms, controlling a variety of cellular processes. HR1 repeats often occur in tandem repeat arrangments, seperated by a short linker region.
Probab=20.51 E-value=1.9e+02 Score=21.26 Aligned_cols=28 Identities=32% Similarity=0.545 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024845 147 LLSRADTKVKQLRQSIDRLKAESEKLEK 174 (261)
Q Consensus 147 ll~~Ae~~v~eLr~svdl~k~Es~KL~e 174 (261)
....|+.+..+-.+.+++++.++++++.
T Consensus 43 ~~~~~~~~l~es~~ki~~Lr~~L~k~~~ 70 (72)
T cd00089 43 LLAEAEQMLRESKQKLELLKMQLEKLKQ 70 (72)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3557777888888888888888877653
No 227
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=20.33 E-value=4.2e+02 Score=20.55 Aligned_cols=27 Identities=30% Similarity=0.508 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024845 150 RADTKVKQLRQSIDRLKAESEKLEKVA 176 (261)
Q Consensus 150 ~Ae~~v~eLr~svdl~k~Es~KL~era 176 (261)
....+...+...+|.++++...+-...
T Consensus 33 ~ld~~~r~l~~~~e~lr~~rN~~sk~I 59 (108)
T PF02403_consen 33 ELDQERRELQQELEELRAERNELSKEI 59 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 344555566666666666655555443
No 228
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.22 E-value=7.7e+02 Score=23.58 Aligned_cols=80 Identities=10% Similarity=0.190 Sum_probs=50.3
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhccCCchHHHHHHHHHhHhHHHHHHHHHHHHHHHHhhh
Q 024845 176 ALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIVGELPRREASRFRSQVSNIASEAKRERNALTKEVSKIS 255 (261)
Q Consensus 176 aa~AE~E~~rGrtkLr~ag~qiq~l~~s~yk~E~~A~gL~d~Lr~LP~reA~~LRseVAs~AS~vK~qR~aL~k~l~KIs 255 (261)
....+.++..-...+.+.-.+|.+|-..+-++=++...+.+...++- .+--+|..+|..+-...+.+-..|.+++.-+-
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~-~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq 111 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSK-AEIKKLQKEIAELKENIVERQELLKKRARAMQ 111 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555666666666666666666666666666666555542 34456677777777777777777777766554
Q ss_pred h
Q 024845 256 N 256 (261)
Q Consensus 256 ~ 256 (261)
.
T Consensus 112 ~ 112 (265)
T COG3883 112 V 112 (265)
T ss_pred H
Confidence 3
No 229
>PF13997 YqjK: YqjK-like protein
Probab=20.15 E-value=1e+02 Score=23.59 Aligned_cols=30 Identities=17% Similarity=0.444 Sum_probs=20.3
Q ss_pred hhhHHHhhhChhhhhHHHHHHHHhhcccchhHH
Q 024845 101 KEGIHVAASHPFITAGGAIGLGSFLLKRPRHFL 133 (261)
Q Consensus 101 Kegv~~A~~hP~~a~g~a~~ag~lll~~PRrfL 133 (261)
=++|...+.||.+.+|+. +++.+++|++++
T Consensus 30 w~~l~~lr~~~~l~~g~~---a~~~ir~P~r~~ 59 (73)
T PF13997_consen 30 WQTLRSLRRHPILGSGVL---ALYGIRHPRRLI 59 (73)
T ss_pred HHHHHHHHHhHHHHHHHH---HHHHHhChHHHH
Confidence 344567788998766654 455667899854
No 230
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=20.05 E-value=6.3e+02 Score=22.56 Aligned_cols=43 Identities=12% Similarity=0.122 Sum_probs=22.0
Q ss_pred hhHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024845 130 RHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKL 172 (261)
Q Consensus 130 RrfL~r~TlgrF~SEEall~~Ae~~v~eLr~svdl~k~Es~KL 172 (261)
.+|+|....+-+..=+..+..--...+.++...+.+..+.++.
T Consensus 71 ~k~~~~pI~~vLe~R~~~I~~~L~~Ae~~k~eAe~~~~~ye~~ 113 (204)
T PRK09174 71 SRVILPRIGGIIETRRDRIAQDLDQAARLKQEADAAVAAYEQE 113 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567666555555444444444444444444444444444433
Done!