Query 024845
Match_columns 261
No_of_seqs 34 out of 36
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 15:25:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024845.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024845hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3na7_A HP0958; flagellar bioge 88.7 11 0.00038 32.6 15.1 104 148-252 41-153 (256)
2 2efr_A General control protein 83.6 17 0.00058 30.6 11.5 70 146-215 84-153 (155)
3 3na7_A HP0958; flagellar bioge 83.0 22 0.00076 30.7 14.7 97 151-251 16-113 (256)
4 2b9c_A Striated-muscle alpha t 79.3 22 0.00075 29.3 10.6 60 146-205 66-125 (147)
5 1ic2_A Tropomyosin alpha chain 77.2 19 0.00064 26.5 8.8 59 157-215 3-61 (81)
6 3u1c_A Tropomyosin alpha-1 cha 76.8 23 0.0008 27.2 14.3 65 155-219 4-68 (101)
7 3u59_A Tropomyosin beta chain; 75.5 25 0.00084 26.8 14.3 65 155-219 4-68 (101)
8 2dfs_A Myosin-5A; myosin-V, in 74.4 16 0.00055 38.4 10.4 56 129-184 897-959 (1080)
9 1c1g_A Tropomyosin; contractIl 63.7 52 0.0018 25.9 14.4 20 154-173 21-40 (284)
10 1z6o_M Ferritin heavy chain; m 63.6 42 0.0014 27.9 8.9 70 35-111 105-175 (191)
11 1i84_S Smooth muscle myosin he 62.5 29 0.001 36.3 9.4 58 161-218 879-936 (1184)
12 3lay_A Zinc resistance-associa 58.2 69 0.0024 27.1 9.4 56 187-260 91-146 (175)
13 3ol1_A Vimentin; structural ge 57.2 68 0.0023 25.2 9.3 33 152-184 19-54 (119)
14 2b9b_A Fusion glycoprotein F0; 57.0 31 0.0011 34.0 8.0 60 164-223 427-486 (497)
15 2xzr_A Immunoglobulin-binding 55.6 79 0.0027 25.4 11.9 49 169-217 57-105 (114)
16 3vkg_A Dynein heavy chain, cyt 55.2 3.3E+02 0.011 32.5 20.6 98 128-225 2010-2107(3245)
17 3oja_B Anopheles plasmodium-re 54.4 1.4E+02 0.0047 27.8 12.8 92 143-242 474-576 (597)
18 3u1c_A Tropomyosin alpha-1 cha 53.2 74 0.0025 24.3 10.9 66 153-218 9-74 (101)
19 2v66_B Nuclear distribution pr 53.0 86 0.0029 25.1 8.6 63 151-213 1-74 (111)
20 2efr_A General control protein 52.7 1E+02 0.0035 25.8 13.3 70 148-221 13-82 (155)
21 2dfs_A Myosin-5A; myosin-V, in 50.0 2.4E+02 0.0084 29.7 13.8 26 194-219 997-1022(1080)
22 1cii_A Colicin IA; bacteriocin 49.8 2.1E+02 0.0072 28.6 13.6 74 144-217 340-413 (602)
23 4ani_A Protein GRPE; chaperone 45.9 1E+02 0.0036 26.8 8.8 62 155-223 61-124 (213)
24 3u59_A Tropomyosin beta chain; 44.2 1E+02 0.0035 23.3 12.2 88 148-236 4-91 (101)
25 2lom_A HIG1 domain family memb 49.1 5.1 0.00017 31.2 0.0 30 93-125 13-42 (93)
26 2z5i_A TM, general control pro 42.8 63 0.0022 22.4 5.6 27 149-175 8-34 (52)
27 3bbp_D GRIP and coiled-coil do 41.7 43 0.0015 25.2 4.9 29 146-174 36-64 (71)
28 3hnw_A Uncharacterized protein 40.0 1.5E+02 0.0051 24.0 10.5 59 151-209 73-131 (138)
29 3pev_B Nucleoporin GLE1; RECA, 38.2 1.1E+02 0.0036 27.8 7.9 67 63-130 51-125 (297)
30 4dk0_A Putative MACA; alpha-ha 36.6 1.8E+02 0.0062 25.1 8.9 10 175-184 92-101 (369)
31 3swy_A Cyclic nucleotide-gated 36.4 1E+02 0.0035 21.2 6.9 41 150-190 2-42 (46)
32 2lon_A HIG1 domain family memb 42.5 7.5 0.00026 30.6 0.0 30 94-126 15-44 (99)
33 2b5u_A Colicin E3; high resolu 34.5 1.6E+02 0.0054 29.5 8.9 64 151-214 319-382 (551)
34 3swf_A CGMP-gated cation chann 31.9 1.6E+02 0.0055 22.2 6.7 35 150-184 4-38 (74)
35 2v71_A Nuclear distribution pr 31.6 2.5E+02 0.0086 24.2 14.3 23 174-196 63-85 (189)
36 1ic2_A Tropomyosin alpha chain 30.9 1.5E+02 0.0052 21.5 10.6 69 151-219 4-72 (81)
37 3oja_B Anopheles plasmodium-re 30.5 3E+02 0.01 25.4 9.8 33 64-96 440-472 (597)
38 3azd_A Short alpha-tropomyosin 26.7 16 0.00055 23.9 0.3 31 153-183 4-34 (37)
39 3lof_A Heat shock 70 kDa prote 26.2 2E+02 0.0069 21.4 7.6 60 192-256 9-80 (113)
40 3mud_A DNA repair protein XRCC 25.5 2.1E+02 0.0071 24.6 7.2 43 147-189 129-171 (175)
41 2r32_A GCN4-PII/tumor necrosis 25.3 51 0.0017 28.3 3.3 39 186-224 5-43 (166)
42 4emc_A Monopolin complex subun 25.1 3.2E+02 0.011 23.8 8.3 52 140-191 14-65 (190)
43 1ses_A Seryl-tRNA synthetase; 25.0 3.2E+02 0.011 25.4 9.0 77 146-222 28-105 (421)
44 1go4_E MAD1 (mitotic arrest de 24.6 1.2E+02 0.0043 23.8 5.2 33 153-185 12-44 (100)
45 2jee_A YIIU; FTSZ, septum, coi 24.5 2.3E+02 0.008 21.5 11.9 71 146-219 6-79 (81)
46 1dkg_A Nucleotide exchange fac 23.7 3.3E+02 0.011 23.1 8.1 44 181-224 60-105 (197)
47 2ke4_A CDC42-interacting prote 23.7 99 0.0034 23.9 4.4 31 152-182 61-91 (98)
48 3zx6_A HAMP, methyl-accepting 23.7 3.8E+02 0.013 23.7 11.4 64 146-209 87-150 (341)
49 3plt_A Sphingolipid long chain 23.2 4E+02 0.014 23.7 9.3 134 32-203 18-160 (234)
50 1jcd_A Major outer membrane li 23.1 2E+02 0.0067 20.1 7.2 42 148-189 6-47 (52)
51 3ghg_A Fibrinogen alpha chain; 23.0 4.5E+02 0.015 26.4 9.8 30 227-256 120-149 (562)
52 1kd8_B GABH BLL, GCN4 acid bas 22.9 1.6E+02 0.0054 19.6 4.6 28 148-175 3-30 (36)
53 3qne_A Seryl-tRNA synthetase, 22.4 5.4E+02 0.018 24.9 11.8 89 134-222 19-112 (485)
54 3ghg_A Fibrinogen alpha chain; 22.2 6E+02 0.02 25.5 10.5 84 154-242 65-149 (562)
55 3m48_A General control protein 21.9 1.3E+02 0.0043 19.7 3.9 26 149-174 3-28 (33)
56 4etp_A Kinesin-like protein KA 21.6 3.2E+02 0.011 25.4 8.2 37 157-193 7-43 (403)
57 1qu7_A Methyl-accepting chemot 21.3 3.8E+02 0.013 22.7 9.3 62 148-209 9-70 (227)
58 3cvf_A Homer-3, homer protein 21.1 2.5E+02 0.0085 21.2 6.0 49 155-203 8-56 (79)
59 2dq0_A Seryl-tRNA synthetase; 20.4 4.5E+02 0.015 24.8 9.1 76 147-222 32-110 (455)
60 2zvf_A Alanyl-tRNA synthetase; 20.3 1.4E+02 0.0047 23.6 4.8 23 154-176 33-55 (171)
No 1
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=88.72 E-value=11 Score=32.62 Aligned_cols=104 Identities=11% Similarity=0.112 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH---------HHHHHHHHHHHHHHHHHHHHhhHHHHh
Q 024845 148 LSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLR---------QAGKQIQGVINSAYKIERQAAGLKDIV 218 (261)
Q Consensus 148 l~~Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr---------~ag~qiq~l~~s~yk~E~~A~gL~d~L 218 (261)
+.+....+..++..++.++.+..++..-....+....+-..+|. +-.++|..+-..+...|.....+++.+
T Consensus 41 ~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~kEie~~~~~i~~lE~eile~~e~i 120 (256)
T 3na7_A 41 KEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEI 120 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444443 335677777777777777777777766
Q ss_pred ccCCchHHHHHHHHHhHhHHHHHHHHHHHHHHHH
Q 024845 219 GELPRREASRFRSQVSNIASEAKRERNALTKEVS 252 (261)
Q Consensus 219 r~LP~reA~~LRseVAs~AS~vK~qR~aL~k~l~ 252 (261)
..+-. +--.+..+++.+-..+...+..++..+.
T Consensus 121 e~~~~-~l~~~~~~l~~~~~~l~~~~~~~~~~~~ 153 (256)
T 3na7_A 121 KRKSE-KQEDLKKEMLELEKLALELESLVENEVK 153 (256)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55422 2223444555555555544444444443
No 2
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=83.55 E-value=17 Score=30.55 Aligned_cols=70 Identities=19% Similarity=0.321 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 024845 146 SLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLK 215 (261)
Q Consensus 146 all~~Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr~ag~qiq~l~~s~yk~E~~A~gL~ 215 (261)
..++.|+.+.+.---+|.-+..++.+|+|.+......+..=.-.|.++-.+|.++....|-.++..+.|+
T Consensus 84 ~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~~~~~~~~ 153 (155)
T 2efr_A 84 DKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLENEVARLK 153 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHhh
Confidence 4678888888888888888889999999999999999999999999999999999999999999888775
No 3
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=83.05 E-value=22 Score=30.73 Aligned_cols=97 Identities=12% Similarity=0.142 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhccCCc-hHHHHH
Q 024845 151 ADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIVGELPR-REASRF 229 (261)
Q Consensus 151 Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr~ag~qiq~l~~s~yk~E~~A~gL~d~Lr~LP~-reA~~L 229 (261)
.+.+...|+.....+-.|+..|++.....+.++..=.+.+.....++..+-..+-....+.......|...-. ++-..|
T Consensus 16 lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL 95 (256)
T 3na7_A 16 LDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSL 95 (256)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHH
Confidence 3344444455555555555555555555555555555556666666666555555555555555555555544 777777
Q ss_pred HHHHhHhHHHHHHHHHHHHHHH
Q 024845 230 RSQVSNIASEAKRERNALTKEV 251 (261)
Q Consensus 230 RseVAs~AS~vK~qR~aL~k~l 251 (261)
..|+..+ +.....|++.|
T Consensus 96 ~kEie~~----~~~i~~lE~ei 113 (256)
T 3na7_A 96 NIEEDIA----KERSNQANREI 113 (256)
T ss_dssp HHHHHHH----HHHHHHHHHHH
T ss_pred HHHHHHH----HHHHHHHHHHH
Confidence 7787776 44444444444
No 4
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=79.28 E-value=22 Score=29.32 Aligned_cols=60 Identities=13% Similarity=0.226 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 024845 146 SLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAY 205 (261)
Q Consensus 146 all~~Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr~ag~qiq~l~~s~y 205 (261)
.+...|+.++.+....+..+.+++.+..+|+-.||.....=-..|+..|..|++|--+--
T Consensus 66 ~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~~ee 125 (147)
T 2b9c_A 66 HIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEDKVE 125 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHH
Confidence 345688999999999999999999999999999999999999999999999999865533
No 5
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=77.24 E-value=19 Score=26.48 Aligned_cols=59 Identities=14% Similarity=0.144 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 024845 157 QLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLK 215 (261)
Q Consensus 157 eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr~ag~qiq~l~~s~yk~E~~A~gL~ 215 (261)
.++..|..++.|.....+++..++.++..-.-...++..+|.+|-+.+--+|...-.+.
T Consensus 3 ~ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~e 61 (81)
T 1ic2_A 3 AIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYS 61 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566667777777777777777777766666666666666666666655555444333
No 6
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=76.78 E-value=23 Score=27.18 Aligned_cols=65 Identities=14% Similarity=0.127 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhc
Q 024845 155 VKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIVG 219 (261)
Q Consensus 155 v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr~ag~qiq~l~~s~yk~E~~A~gL~d~Lr 219 (261)
+...+..|..++.|.....||+-.+|.+++.-.-...+...+|.+|-+.+-.+|...-.+-+.|.
T Consensus 4 MdaIKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ 68 (101)
T 3u1c_A 4 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELH 68 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888889999999999999999999988888889999999998888877776665555554
No 7
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=75.46 E-value=25 Score=26.82 Aligned_cols=65 Identities=17% Similarity=0.217 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhc
Q 024845 155 VKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIVG 219 (261)
Q Consensus 155 v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr~ag~qiq~l~~s~yk~E~~A~gL~d~Lr 219 (261)
+...+..|..++-|.....||+-.+|.+++--.-...+...+|.+|-+.+-.+|...-.+-+.|.
T Consensus 4 md~iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~ 68 (101)
T 3u59_A 4 MEAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVK 68 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567777888888888888888888888877777777788888887777777766665555554
No 8
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=74.43 E-value=16 Score=38.42 Aligned_cols=56 Identities=20% Similarity=0.137 Sum_probs=12.4
Q ss_pred chhHHHHHhhhhhcCHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024845 129 PRHFLYYNTLRLFASEESL-------LSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELI 184 (261)
Q Consensus 129 PRrfL~r~TlgrF~SEEal-------l~~Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~E~~ 184 (261)
-|+++=|.-+.+++.|..- -..-+.++++|+..++....|...|.+++...|+.+.
T Consensus 897 ~R~~laRr~~~~Lk~ear~~~~l~~~~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~ 959 (1080)
T 2dfs_A 897 YRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYS 959 (1080)
T ss_dssp HHHHHHHHHTTTC-----------------------------------------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 3666667777777666432 3455667888888887776666666655543333333
No 9
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=63.65 E-value=52 Score=25.85 Aligned_cols=20 Identities=15% Similarity=0.250 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 024845 154 KVKQLRQSIDRLKAESEKLE 173 (261)
Q Consensus 154 ~v~eLr~svdl~k~Es~KL~ 173 (261)
...+|...++.+..+...+.
T Consensus 21 ~~~~l~~~l~~l~~~~~~~~ 40 (284)
T 1c1g_A 21 RADEAEADKKAAEDRSKQLE 40 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 10
>1z6o_M Ferritin heavy chain; metal binding protein, iron storage; 1.91A {Trichoplusia NI} SCOP: a.25.1.1
Probab=63.63 E-value=42 Score=27.92 Aligned_cols=70 Identities=20% Similarity=0.187 Sum_probs=51.1
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhHHHhhhCh
Q 024845 35 IDNAVQQVMIYRKIVEESIDSAIEASRSRLSQTRLTASVHFQQTLDYLQD-VKSEYAAYEDAAVGKVKEGIHVAASHP 111 (261)
Q Consensus 35 ~~~a~~qa~~~qk~~~~s~d~ai~a~~sr~s~~~~ts~~h~~~~~~~l~~-~~sey~~yEd~~f~kiKegv~~A~~hP 111 (261)
+.+++..|+-+.|.+.+++...++.|.. -.|..+.||. |+|++ +..+--.-|..+.+.|-+=..++..+|
T Consensus 105 ~~e~le~aL~~Ek~v~~~i~~l~~~a~~----~~D~~d~~~~---d~Le~~fl~EQve~~~~l~~~i~~l~k~~~~~~ 175 (191)
T 1z6o_M 105 GVEALEHALSMESDVTKSIRNVIKACED----DSEFNDYHLV---DYLTGDFLEEQYKGQRDLAGKASTLKKLMDRHE 175 (191)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----CTTCCCHHHH---HHHHHTHHHHHHHHHHHHHHHHHHHHTTTTTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----cCCcCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 6689999999999999999999999987 4566677765 55665 555555556666777655455665554
No 11
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=62.49 E-value=29 Score=36.32 Aligned_cols=58 Identities=9% Similarity=0.101 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHh
Q 024845 161 SIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIV 218 (261)
Q Consensus 161 svdl~k~Es~KL~eraa~AE~E~~rGrtkLr~ag~qiq~l~~s~yk~E~~A~gL~d~L 218 (261)
.++.+..+...|++....++.++..-+..+..+..++..+....-+.+.+-..+.+.|
T Consensus 879 ~l~ele~~l~~Le~e~~~l~~~L~~e~~~l~~~e~~l~~l~~~~~~Le~~l~ele~el 936 (1184)
T 1i84_S 879 ELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARI 936 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444445544445555555555555555555555444444443
No 12
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=58.24 E-value=69 Score=27.07 Aligned_cols=56 Identities=9% Similarity=0.183 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhccCCchHHHHHHHHHhHhHHHHHHHHHHHHHHHHhhhhcCCC
Q 024845 187 RTKLRQAGKQIQGVINSAYKIERQAAGLKDIVGELPRREASRFRSQVSNIASEAKRERNALTKEVSKISNYGIS 260 (261)
Q Consensus 187 rtkLr~ag~qiq~l~~s~yk~E~~A~gL~d~Lr~LP~reA~~LRseVAs~AS~vK~qR~aL~k~l~KIs~~GI~ 260 (261)
+.+|++-..||+.|+..---.|. .+-.|-.|++.+-.++..+|-.....+.|. |||
T Consensus 91 r~ql~akr~EL~aL~~a~~~Dea---------------kI~aL~~Ei~~Lr~qL~~~R~k~~~em~Ke---Gip 146 (175)
T 3lay_A 91 RQQLISKRYEYNALLTASSPDTA---------------KINAVAKEMESLGQKLDEQRVKRDVAMAQA---GIP 146 (175)
T ss_dssp HHHHHHHHHHHHHHHTSSSCCHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---TCC
T ss_pred HHHHHHHHHHHHHHHhCCCCCHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CCC
Confidence 45566666777777543322333 334455666667667777777777777665 887
No 13
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=57.20 E-value=68 Score=25.15 Aligned_cols=33 Identities=18% Similarity=0.347 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Q 024845 152 DTKVKQLRQSIDRLKAESEKLE---KVALVAEDELI 184 (261)
Q Consensus 152 e~~v~eLr~svdl~k~Es~KL~---eraa~AE~E~~ 184 (261)
++...+||..|+.+..|-.+|. +.+..+=++|+
T Consensus 19 e~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk 54 (119)
T 3ol1_A 19 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLR 54 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888888777777775 44444444443
No 14
>2b9b_A Fusion glycoprotein F0; fusion protein, PRE-fusion conformation, viral protein; HET: NAG; 2.85A {Simian virus 5}
Probab=57.00 E-value=31 Score=33.95 Aligned_cols=60 Identities=23% Similarity=0.375 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhccCCc
Q 024845 164 RLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIVGELPR 223 (261)
Q Consensus 164 l~k~Es~KL~eraa~AE~E~~rGrtkLr~ag~qiq~l~~s~yk~E~~A~gL~d~Lr~LP~ 223 (261)
+.+.|+.+....+.-|++-+.+--..|.+.+..+.++.+.+|.+|+..+.++.-.++-|+
T Consensus 427 DISseL~~vn~sl~~a~~~I~~Sn~~L~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (497)
T 2b9b_A 427 DISQNLAAVNKSLSDALQHLAQSDTYLSAIEDKIEEILSKIYHIENEIARIKKLIGEAPG 486 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCC---
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhHHHHhhhhhhhHHHHHHHHHhccCCC
Confidence 356788888888888899899999999999999999999999999999999999999997
No 15
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=55.65 E-value=79 Score=25.42 Aligned_cols=49 Identities=14% Similarity=0.300 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 024845 169 SEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDI 217 (261)
Q Consensus 169 s~KL~eraa~AE~E~~rGrtkLr~ag~qiq~l~~s~yk~E~~A~gL~d~ 217 (261)
+++-..|+---.....-.+-.++++..|+..|++.+|-+|+..+.|+.-
T Consensus 57 lQqh~aRlnsqQrQI~ENhkEMKq~aaqsaaLlsk~yh~ene~ar~kkl 105 (114)
T 2xzr_A 57 LQQHSARLDSQQRQINENHKEMKQIEDKIEEILSKIYHIENEIARIKKL 105 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3344445555555566677889999999999999999999999888754
No 16
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=55.25 E-value=3.3e+02 Score=32.50 Aligned_cols=98 Identities=11% Similarity=0.034 Sum_probs=69.5
Q ss_pred cchhHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 024845 128 RPRHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKI 207 (261)
Q Consensus 128 ~PRrfL~r~TlgrF~SEEall~~Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr~ag~qiq~l~~s~yk~ 207 (261)
.|-|-=-...-..+.--++-++.++.+++++...++.++.+.+.+......-|.|+..-..||..|.+=|.+|.+.--.=
T Consensus 2010 ~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW 2089 (3245)
T 3vkg_A 2010 GPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRW 2089 (3245)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccH
Confidence 56554333333444444556667777777777777777777777777777777788888888888888888888777777
Q ss_pred HHHHhhHHHHhccCCchH
Q 024845 208 ERQAAGLKDIVGELPRRE 225 (261)
Q Consensus 208 E~~A~gL~d~Lr~LP~re 225 (261)
+.++..|.+.+..||++=
T Consensus 2090 ~~~~~~l~~~~~~L~GD~ 2107 (3245)
T 3vkg_A 2090 EQQSENFNTQMSTVVGDV 2107 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHH
Confidence 777888888777777753
No 17
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=54.42 E-value=1.4e+02 Score=27.75 Aligned_cols=92 Identities=16% Similarity=0.171 Sum_probs=56.3
Q ss_pred CHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024845 143 SEESLLSRADTKVKQLRQSI-----------DRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQA 211 (261)
Q Consensus 143 SEEall~~Ae~~v~eLr~sv-----------dl~k~Es~KL~eraa~AE~E~~rGrtkLr~ag~qiq~l~~s~yk~E~~A 211 (261)
..+..++..+.+.++.++.. +.++.+.+++.++.+..|.+.++=.....+-..+++.+-+.+-.+|++-
T Consensus 474 ~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~ 553 (597)
T 3oja_B 474 QQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQL 553 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhhcCccccccCCHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHH
Confidence 34555555555555554442 5667777777777777777777755555555566666666666677666
Q ss_pred hhHHHHhccCCchHHHHHHHHHhHhHHHHHH
Q 024845 212 AGLKDIVGELPRREASRFRSQVSNIASEAKR 242 (261)
Q Consensus 212 ~gL~d~Lr~LP~reA~~LRseVAs~AS~vK~ 242 (261)
..-++.+ .+++.|+..+..++|+
T Consensus 554 ~~~~~~~--------~~l~~e~~~~~~~~~~ 576 (597)
T 3oja_B 554 DNKRAKQ--------AELRQETSLKRQKVKQ 576 (597)
T ss_dssp HHHHHHH--------HHHHHHHHHHHHHHHH
T ss_pred hhhhhHH--------HHHHHHHHHHHHHHHH
Confidence 6655554 4455666665444444
No 18
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=53.18 E-value=74 Score=24.32 Aligned_cols=66 Identities=17% Similarity=0.132 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHh
Q 024845 153 TKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIV 218 (261)
Q Consensus 153 ~~v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr~ag~qiq~l~~s~yk~E~~A~gL~d~L 218 (261)
+++.-|+.-.|........++..+-.+|.+....-..+.+-.+-|+.+-..+=+.+.+.....+.|
T Consensus 9 kKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kL 74 (101)
T 3u1c_A 9 KKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSL 74 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444433333333333333333333333333333333333333333333333333333
No 19
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=52.98 E-value=86 Score=25.06 Aligned_cols=63 Identities=21% Similarity=0.240 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhhHHHHHHHHHHH----HHHHHHHHHHHHHHhh
Q 024845 151 ADTKVKQLRQSIDRLKAESEKLEKVALVAEDE-------LIRGRTKLRQAGKQI----QGVINSAYKIERQAAG 213 (261)
Q Consensus 151 Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~E-------~~rGrtkLr~ag~qi----q~l~~s~yk~E~~A~g 213 (261)
|+++..+|+..++.+..|...+.++......| +++-.++||.....+ +.|--..=+.|+++.-
T Consensus 1 ~Ek~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~ 74 (111)
T 2v66_B 1 AEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRA 74 (111)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHH
Confidence 57788889999999999988888887777665 777778888776544 4444445555555543
No 20
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=52.74 E-value=1e+02 Score=25.79 Aligned_cols=70 Identities=17% Similarity=0.186 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhccC
Q 024845 148 LSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIVGEL 221 (261)
Q Consensus 148 l~~Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr~ag~qiq~l~~s~yk~E~~A~gL~d~Lr~L 221 (261)
...|+.++.+... +-+++.+-++|+..||.....=-..|+.+|..|++|--+--|...+=..+-+.++.|
T Consensus 13 ae~ad~KyeEvaR----~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L 82 (155)
T 2efr_A 13 LSKNYHLENEVAR----LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVL 82 (155)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHH
Confidence 4566777776555 888999999999999999888888999999999999877555443333333333333
No 21
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=50.02 E-value=2.4e+02 Score=29.66 Aligned_cols=26 Identities=19% Similarity=0.127 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHhc
Q 024845 194 GKQIQGVINSAYKIERQAAGLKDIVG 219 (261)
Q Consensus 194 g~qiq~l~~s~yk~E~~A~gL~d~Lr 219 (261)
..+++.+.+.--..|.....+.++|.
T Consensus 997 ~~~~~~~~ke~~~lee~~~~~~~~L~ 1022 (1080)
T 2dfs_A 997 RKELHQTQTEKKTIEEWADKYKHETE 1022 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444433344555555554444
No 22
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=49.78 E-value=2.1e+02 Score=28.61 Aligned_cols=74 Identities=14% Similarity=0.233 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 024845 144 EESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDI 217 (261)
Q Consensus 144 EEall~~Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr~ag~qiq~l~~s~yk~E~~A~gL~d~ 217 (261)
+..+++.-.++...|+|-++..++|.-+++--........-++.+...+|-..+..+.+---.+|+++.++...
T Consensus 340 ~Kki~naevae~~~lrQRlddArNEItsaeSaInslqaqvSa~t~e~k~A~d~l~a~~kek~~~~n~~a~~~~K 413 (602)
T 1cii_A 340 DKKIYNAEVAEWDKLRQRLLDARNKITSAESAVNSARNNLSARTNEQKHANDALNALLKEKENIRNQLSGINQK 413 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Confidence 45678888888999999999999999999888888888888888888888888888777777777777665543
No 23
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=45.94 E-value=1e+02 Score=26.85 Aligned_cols=62 Identities=15% Similarity=0.285 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH--HHHHHHHHhhHHHHhccCCc
Q 024845 155 VKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINS--AYKIERQAAGLKDIVGELPR 223 (261)
Q Consensus 155 v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr~ag~qiq~l~~s--~yk~E~~A~gL~d~Lr~LP~ 223 (261)
++.|...++.++.|...|.++. +|-...+-+-.+-.++-... -|.+++-+..|+..|..|-+
T Consensus 61 ~~~l~~~l~~l~~e~~el~d~~-------lR~~AEfeN~RkR~~rE~e~~~~~a~e~~~~~LLpVlDnler 124 (213)
T 4ani_A 61 LAAAKAQIAELEAKLSEMEHRY-------LRLYADFENFRRRTRQEMEAAEKYRAQSLASDLLPVLDNFER 124 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3455555555555555555554 44444444444444433333 46788888888888776644
No 24
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=44.22 E-value=1e+02 Score=23.32 Aligned_cols=88 Identities=14% Similarity=0.188 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhccCCchHHH
Q 024845 148 LSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIVGELPRREAS 227 (261)
Q Consensus 148 l~~Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr~ag~qiq~l~~s~yk~E~~A~gL~d~Lr~LP~reA~ 227 (261)
.....+++..|+.-.|........++..+-.+|.+....-..+.+-.+.|+.+-..+=+.+.+.......|..- .+.+.
T Consensus 4 md~iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~-ek~~~ 82 (101)
T 3u59_A 4 MEAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQA-EKKAT 82 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 44567888888888888888888888888888888888888888888888888888888888888887777543 22223
Q ss_pred HHHHHHhHh
Q 024845 228 RFRSQVSNI 236 (261)
Q Consensus 228 ~LRseVAs~ 236 (261)
.-=++|++|
T Consensus 83 ~AE~evasL 91 (101)
T 3u59_A 83 DAEAEVASL 91 (101)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333455555
No 25
>2lom_A HIG1 domain family member 1A; membrane protein, helical bundle; NMR {Homo sapiens}
Probab=49.14 E-value=5.1 Score=31.24 Aligned_cols=30 Identities=27% Similarity=0.238 Sum_probs=22.7
Q ss_pred HHHHHHhhhhhHHHhhhChhhhhHHHHHHHHhh
Q 024845 93 EDAAVGKVKEGIHVAASHPFITAGGAIGLGSFL 125 (261)
Q Consensus 93 Ed~~f~kiKegv~~A~~hP~~a~g~a~~ag~ll 125 (261)
|..+..|+ +.-+++||++-+|++.+++.++
T Consensus 13 ~e~~~~K~---~rk~ke~PlvpIg~~~~~~vl~ 42 (93)
T 2lom_A 13 EEDQGSKL---IRKAKEAPFVPVGIAGFAAIVA 42 (93)
Confidence 45566677 6677899999999877776665
No 26
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=42.77 E-value=63 Score=22.38 Aligned_cols=27 Identities=19% Similarity=0.238 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024845 149 SRADTKVKQLRQSIDRLKAESEKLEKV 175 (261)
Q Consensus 149 ~~Ae~~v~eLr~svdl~k~Es~KL~er 175 (261)
.-|++.|..|..+||.+..|+..-.++
T Consensus 8 efAERsV~KLek~ID~LEdeL~~eKek 34 (52)
T 2z5i_A 8 YHLENEVARLKKLVDDLEDELYAQKLK 34 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 347899999999998887766544333
No 27
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=41.67 E-value=43 Score=25.21 Aligned_cols=29 Identities=31% Similarity=0.439 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024845 146 SLLSRADTKVKQLRQSIDRLKAESEKLEK 174 (261)
Q Consensus 146 all~~Ae~~v~eLr~svdl~k~Es~KL~e 174 (261)
.||+-.++....|-+-++++|.|+++|+.
T Consensus 36 ~LL~EsEatnarL~eq~~lLK~EIRRlER 64 (71)
T 3bbp_D 36 GLLRETEATNAILMEQIKLLKSEIRRLER 64 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccchHHHHHHHHHHHHHHHHHHHh
Confidence 58889999999999999999999999963
No 28
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=39.98 E-value=1.5e+02 Score=24.01 Aligned_cols=59 Identities=15% Similarity=0.173 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 024845 151 ADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIER 209 (261)
Q Consensus 151 Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr~ag~qiq~l~~s~yk~E~ 209 (261)
+..++..|...++.+..|...|...+..+..++---.-++.....++..|-..+-+.|.
T Consensus 73 ~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~ 131 (138)
T 3hnw_A 73 AKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLET 131 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666555555555555555444444444444555555555555555553
No 29
>3pev_B Nucleoporin GLE1; RECA, heat, DEAD-BOX, ATPase, helicase, mRNA export, nuclear hydrolase; HET: IHP; 2.50A {Saccharomyces cerevisiae} PDB: 3peu_B* 3pex_B* 3pez_B* 3rrm_B* 3rrn_B*
Probab=38.18 E-value=1.1e+02 Score=27.83 Aligned_cols=67 Identities=10% Similarity=0.018 Sum_probs=44.5
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH------HH-H-hhhhhHHHhhhChhhhhHHHHHHHHhhcccch
Q 024845 63 RLSQTRLTASVHFQQTLDYLQDVKSEYAAYEDA------AV-G-KVKEGIHVAASHPFITAGGAIGLGSFLLKRPR 130 (261)
Q Consensus 63 r~s~~~~ts~~h~~~~~~~l~~~~sey~~yEd~------~f-~-kiKegv~~A~~hP~~a~g~a~~ag~lll~~PR 130 (261)
.+.||. +|..|.+...+.|..+.++.+..... +| + -|+.+-.-+..||..+-++|.++..++-..|.
T Consensus 51 ~igQLt-~s~~qi~~i~~~L~~ll~~~~~~~~~~~~~ln~lAK~iV~Q~e~ev~~~p~sA~PlA~v~~~l~~~~p~ 125 (297)
T 3pev_B 51 KFGQLT-NSNQQLFKIQNELTQLINDTKGDSLAYHWILNFIAKAVVHQAETEVRVKPESALPLGKLTLYLLVQFPE 125 (297)
T ss_dssp HHHHCC-SBHHHHHHHHHHHHHHHHTTTTSHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHSTT
T ss_pred hhcccc-CCHHHHHHHHHHHHHHHhCccCCchHHHHHHHHHHHHHHHHHHHHhccCCcccchHHHHHHHHHHhCcc
Confidence 456775 67888888888888877664332222 12 2 35555556678999999999888777655554
No 30
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=36.56 E-value=1.8e+02 Score=25.11 Aligned_cols=10 Identities=20% Similarity=-0.117 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 024845 175 VALVAEDELI 184 (261)
Q Consensus 175 raa~AE~E~~ 184 (261)
....|+.++.
T Consensus 92 ~~~~a~~~~~ 101 (369)
T 4dk0_A 92 AYDVALSNYQ 101 (369)
T ss_dssp HHHHTTTTHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 31
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=36.35 E-value=1e+02 Score=21.17 Aligned_cols=41 Identities=22% Similarity=0.251 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 024845 150 RADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKL 190 (261)
Q Consensus 150 ~Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtkL 190 (261)
..|.+|+.|..++|.+..-..+|+--...++.-+++.-++|
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae~~ssq~KlKqRit~l 42 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAEYNATQMKMKQRLSQL 42 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788999999999999988888765555555555544444
No 32
>2lon_A HIG1 domain family member 1B; membrane protein, helical bundle; NMR {Homo sapiens}
Probab=42.48 E-value=7.5 Score=30.61 Aligned_cols=30 Identities=17% Similarity=0.164 Sum_probs=22.5
Q ss_pred HHHHHhhhhhHHHhhhChhhhhHHHHHHHHhhc
Q 024845 94 DAAVGKVKEGIHVAASHPFITAGGAIGLGSFLL 126 (261)
Q Consensus 94 d~~f~kiKegv~~A~~hP~~a~g~a~~ag~lll 126 (261)
..+..|+ +.-+++||++-+|++.+++.++.
T Consensus 15 es~~~K~---~rk~ke~PlvpIg~l~~~~vl~~ 44 (99)
T 2lon_A 15 DCVSEKL---LRKTRESPLVPIGLGGCLVVAAY 44 (99)
Confidence 4556677 66778999999998877776653
No 33
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=34.50 E-value=1.6e+02 Score=29.47 Aligned_cols=64 Identities=14% Similarity=0.185 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 024845 151 ADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGL 214 (261)
Q Consensus 151 Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr~ag~qiq~l~~s~yk~E~~A~gL 214 (261)
|+++++..|..++...+.....+||...++.=|.--++.|-.+-+++...+..+-..++.+-++
T Consensus 319 Aer~~e~a~ael~~a~k~~a~~~er~~~t~~~~~~~~~~~~~~n~~~~~~~~~~~~f~~~n~~p 382 (551)
T 2b5u_A 319 AERNYERARAELNQANEDVARNQERQAKAVQVYNSRKSELDAANKTLADAIAEIKQFNRFAHDP 382 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhHHHHHHHhhhhhhhhccCh
Confidence 4555555666666666666666777777777777777777777777777777666666655543
No 34
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=31.91 E-value=1.6e+02 Score=22.15 Aligned_cols=35 Identities=17% Similarity=0.220 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024845 150 RADTKVKQLRQSIDRLKAESEKLEKVALVAEDELI 184 (261)
Q Consensus 150 ~Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~E~~ 184 (261)
..+.+|+.|..++|.|+.-..+|+--...++.-|+
T Consensus 4 dlEEKv~~LE~sld~LQTrfARLLaEy~ssQ~KLK 38 (74)
T 3swf_A 4 GLEEKVTRMESSVDLLQTRFARILAEYESMQQKLK 38 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999998888888754444433333
No 35
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=31.58 E-value=2.5e+02 Score=24.17 Aligned_cols=23 Identities=17% Similarity=-0.038 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHH
Q 024845 174 KVALVAEDELIRGRTKLRQAGKQ 196 (261)
Q Consensus 174 eraa~AE~E~~rGrtkLr~ag~q 196 (261)
.+......|....++|+.+...+
T Consensus 63 ~~~~~L~~E~e~~k~K~~~~~~e 85 (189)
T 2v71_A 63 ADNQRLKYEVEALKEKLEHQYAQ 85 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444433
No 36
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=30.87 E-value=1.5e+02 Score=21.48 Aligned_cols=69 Identities=14% Similarity=0.145 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhc
Q 024845 151 ADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIVG 219 (261)
Q Consensus 151 Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr~ag~qiq~l~~s~yk~E~~A~gL~d~Lr 219 (261)
..+++..|+...|........+...+-.+|.....+-..+.+-.+-|+.+-...=+.|.+.......|.
T Consensus 4 ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLe 72 (81)
T 1ic2_A 4 IKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLE 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666677777777776777766666667666666667777777777776666666666666555553
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=30.54 E-value=3e+02 Score=25.40 Aligned_cols=33 Identities=9% Similarity=0.062 Sum_probs=9.9
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 024845 64 LSQTRLTASVHFQQTLDYLQDVKSEYAAYEDAA 96 (261)
Q Consensus 64 ~s~~~~ts~~h~~~~~~~l~~~~sey~~yEd~~ 96 (261)
..++...+..+-.+.++.+.+...+.+..+...
T Consensus 440 ~~~~~~~~~~~~e~l~~e~~~~~~~i~~l~~~~ 472 (597)
T 3oja_B 440 ITQQGGVPLQGNEQLEAEVNELRAEVQQLTNEQ 472 (597)
T ss_dssp --------------CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455555555555555555555443
No 38
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=26.66 E-value=16 Score=23.89 Aligned_cols=31 Identities=16% Similarity=0.269 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024845 153 TKVKQLRQSIDRLKAESEKLEKVALVAEDEL 183 (261)
Q Consensus 153 ~~v~eLr~svdl~k~Es~KL~eraa~AE~E~ 183 (261)
..+..++..|..+..+...+++++..++.++
T Consensus 4 ~~i~avKkKiq~lq~q~d~aee~~~~~~~~l 34 (37)
T 3azd_A 4 SSLEAVRRKIRSLQEQNYHLENEVARLKKLV 34 (37)
T ss_dssp --CHHHHHHHHHHHHHTTTTHHHHHHHHTTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456777777888888888888887777654
No 39
>3lof_A Heat shock 70 kDa protein 1; structural genomics, HSPA1B, HSP70, PSI-2, prote structure initiative; 2.40A {Homo sapiens} PDB: 2lmg_A
Probab=26.17 E-value=2e+02 Score=21.36 Aligned_cols=60 Identities=12% Similarity=0.304 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHh-ccCCchHHHHHHHHHhHh-----------HHHHHHHHHHHHHHHHhhhh
Q 024845 192 QAGKQIQGVINSAYKIERQAAGLKDIV-GELPRREASRFRSQVSNI-----------ASEAKRERNALTKEVSKISN 256 (261)
Q Consensus 192 ~ag~qiq~l~~s~yk~E~~A~gL~d~L-r~LP~reA~~LRseVAs~-----------AS~vK~qR~aL~k~l~KIs~ 256 (261)
.+..++.++ +|.+|++-.. +.+ ..||..+-..+...|..+ ..+++.....|.+.+++|..
T Consensus 9 eakN~lEs~---iy~~e~~l~e--~~~~~kl~~eek~~i~~~i~e~~~wL~~~~~a~~e~i~~k~~eL~~~~~~i~~ 80 (113)
T 3lof_A 9 SAKNALESY---AFNMKSAVED--EGLKGKISEADKKKVLDKCQEVISWLDANTLAEKDEFEHKRKELEQVCNPIIS 80 (113)
T ss_dssp HHHHHHHHH---HHHHHHHHTC--GGGBTTBCHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---HHHHHHHhcc--hhhhccCCHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHH
Confidence 344455555 6777765443 112 236666666666555544 45566777777777777643
No 40
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=25.47 E-value=2.1e+02 Score=24.58 Aligned_cols=43 Identities=16% Similarity=0.126 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 024845 147 LLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTK 189 (261)
Q Consensus 147 ll~~Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtk 189 (261)
|+.-|++.|+.|+..+|.+..|+....++-..-..+|-.-.+.
T Consensus 129 li~~AertV~kLqkeiD~LEDeL~~eKek~k~i~~eLDqTl~e 171 (175)
T 3mud_A 129 LICYCLDTTAKNEKSIDDLEEKVAHAKEENLNMHQMLDQTLLE 171 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778889998888888888777766655555444444443333
No 41
>2r32_A GCN4-PII/tumor necrosis factor ligand superfamily member 18 fusion protein; gitrl, glucocorticoid-induced TNF receptor ligand, cytokine; 1.95A {Saccharomyces cerevisiae} SCOP: b.22.1.1 PDB: 1ce0_A 3f86_A* 3f87_A*
Probab=25.35 E-value=51 Score=28.26 Aligned_cols=39 Identities=26% Similarity=0.574 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhccCCch
Q 024845 186 GRTKLRQAGKQIQGVINSAYKIERQAAGLKDIVGELPRR 224 (261)
Q Consensus 186 GrtkLr~ag~qiq~l~~s~yk~E~~A~gL~d~Lr~LP~r 224 (261)
|-+.+++-...|..+++.+|.+|+.-+.++.-++++|..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ta 43 (166)
T 2r32_A 5 GGSRMKQIEDKIEEILSKIYHIENEIARIKKLIGERETA 43 (166)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 456677888889999999999999999999999998873
No 42
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=25.09 E-value=3.2e+02 Score=23.84 Aligned_cols=52 Identities=15% Similarity=0.123 Sum_probs=35.8
Q ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 024845 140 LFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLR 191 (261)
Q Consensus 140 rF~SEEall~~Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr 191 (261)
|+.+-+-|+..-+.+..-|++.++....|++.|+++++.++.+...-...+.
T Consensus 14 ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~ 65 (190)
T 4emc_A 14 QIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTS 65 (190)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHH
Confidence 3444555677777777888888888888888888888888888865555554
No 43
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=25.03 E-value=3.2e+02 Score=25.41 Aligned_cols=77 Identities=17% Similarity=0.171 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhccCC
Q 024845 146 SLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAE-DELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIVGELP 222 (261)
Q Consensus 146 all~~Ae~~v~eLr~svdl~k~Es~KL~eraa~AE-~E~~rGrtkLr~ag~qiq~l~~s~yk~E~~A~gL~d~Lr~LP 222 (261)
+-+...+.+..++...++.+++|..++-+....+. ++...=..+.++-+.+|..+-.....+|.+-..++-.|--||
T Consensus 28 ~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~~ 105 (421)
T 1ses_A 28 EALLALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEARLEALLLQVPLPP 105 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 34455566667777777777777776665543211 222222233444455555555556666665555555554444
No 44
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=24.63 E-value=1.2e+02 Score=23.77 Aligned_cols=33 Identities=27% Similarity=0.433 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024845 153 TKVKQLRQSIDRLKAESEKLEKVALVAEDELIR 185 (261)
Q Consensus 153 ~~v~eLr~svdl~k~Es~KL~eraa~AE~E~~r 185 (261)
..|..|+..|+-+..|..+|.++...-|-++-+
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 488999999999999999999999888888765
No 45
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=24.52 E-value=2.3e+02 Score=21.50 Aligned_cols=71 Identities=15% Similarity=0.209 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhc
Q 024845 146 SLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAE---DELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIVG 219 (261)
Q Consensus 146 all~~Ae~~v~eLr~svdl~k~Es~KL~eraa~AE---~E~~rGrtkLr~ag~qiq~l~~s~yk~E~~A~gL~d~Lr 219 (261)
.+|..-+.||..+=.+|.+++-|..-|.+.-.... .+...|+-.|+..-.+++.- -......-.+|++.+.
T Consensus 6 ElleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E---~~~wq~Rl~~LLgk~e 79 (81)
T 2jee_A 6 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQ---QNGWQERLQALLGRME 79 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH---HHHHHHHHHHHHHhhh
Confidence 47888999999999999999999999976654433 34555666677666666555 3334445555555543
No 46
>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: b.73.1.1 h.1.9.1
Probab=23.73 E-value=3.3e+02 Score=23.11 Aligned_cols=44 Identities=16% Similarity=0.336 Sum_probs=31.2
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHH--HHHHHHHHhhHHHHhccCCch
Q 024845 181 DELIRGRTKLRQAGKQIQGVINS--AYKIERQAAGLKDIVGELPRR 224 (261)
Q Consensus 181 ~E~~rGrtkLr~ag~qiq~l~~s--~yk~E~~A~gL~d~Lr~LP~r 224 (261)
..|+|-...+-+-.+..++-... -|.+++-+..|+..|..|.+.
T Consensus 60 d~~lR~~Ae~eN~rkR~~ke~~~~~~~a~~~~~~~LLpv~DnlerA 105 (197)
T 1dkg_A 60 DGILRVKAEMENLRRRTELDIEKAHKFALEKFINELLPVIDSLDRA 105 (197)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSGGGHHHHSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 46677777776666666655544 456788999999988888663
No 47
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=23.71 E-value=99 Score=23.89 Aligned_cols=31 Identities=29% Similarity=0.371 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024845 152 DTKVKQLRQSIDRLKAESEKLEKVALVAEDE 182 (261)
Q Consensus 152 e~~v~eLr~svdl~k~Es~KL~eraa~AE~E 182 (261)
+....|+...+|.++.|+.|++.-++.+|..
T Consensus 61 ~~~L~e~~~kid~L~~el~K~q~~L~e~e~~ 91 (98)
T 2ke4_A 61 EPQIAETLSNIERLKLEVQKYEAWLAEAESR 91 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 6678889999999999999999887777644
No 48
>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}
Probab=23.70 E-value=3.8e+02 Score=23.67 Aligned_cols=64 Identities=17% Similarity=0.279 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 024845 146 SLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIER 209 (261)
Q Consensus 146 all~~Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr~ag~qiq~l~~s~yk~E~ 209 (261)
.-+......+++|..+++......+.+.+.+..+.+.+..|...+.+....+..|..++-+|..
T Consensus 87 ~~~~~~~~~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~I~~ 150 (341)
T 3zx6_A 87 ASLEETAASMEQLTATVKQNAENARQASHLALSASETAQRGGKVVDNVVQTMRDISTSSQKIAD 150 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345556677788888888888888888888888888888888887777777777665555443
No 49
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=23.17 E-value=4e+02 Score=23.72 Aligned_cols=134 Identities=19% Similarity=0.224 Sum_probs=76.5
Q ss_pred CcchHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhh---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhh
Q 024845 32 NPWIDNAVQQVMIYRKIVEESIDSAIEASRSRLSQTRL---TASVHFQQTLDYLQDVKSEYAAYEDAAVGKVKEGIHVAA 108 (261)
Q Consensus 32 ~~w~~~a~~qa~~~qk~~~~s~d~ai~a~~sr~s~~~~---ts~~h~~~~~~~l~~~~sey~~yEd~~f~kiKegv~~A~ 108 (261)
.|=.---+++--.-.|++..+.+.+-+-.+.-=++|.. +.-.-..-.-|-|-.+..++...|+.|-...
T Consensus 18 ~pe~sr~L~~LIk~EK~vi~s~e~~are~~~~A~~Ls~WG~~edddl~DIsdklgvLl~e~ge~e~~~a~~~-------- 89 (234)
T 3plt_A 18 GPELARKLSQLVKTEKGVLRAMEVVASERREAAKQLSLWGADNDDDVSDVTDKLGVLIYELGELQDQFIDKY-------- 89 (234)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
T ss_pred ChHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 34444445555555666666666655444433333332 2223344455556666667777776665443
Q ss_pred hChhhhhHHHHHHHHhhcccchhHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHH
Q 024845 109 SHPFITAGGAIGLGSFLLKRPRHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKLE------KVALVAEDE 182 (261)
Q Consensus 109 ~hP~~a~g~a~~ag~lll~~PRrfL~r~TlgrF~SEEall~~Ae~~v~eLr~svdl~k~Es~KL~------eraa~AE~E 182 (261)
==||.+|--. ...|..|...|.--+-+..++.||. .++...|.|
T Consensus 90 -----------------------d~yR~~LK~I-------R~~E~svqp~R~~R~~l~~~I~kLk~k~P~s~kl~~LeqE 139 (234)
T 3plt_A 90 -----------------------DQYRVTLKSI-------RNIEASVQPSRDRKEKITDEIAHLKYKDPQSTKIPVLEQE 139 (234)
T ss_dssp -----------------------HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHH
T ss_pred -----------------------HHHHHHHHHH-------HHHHHHhhHHHHHHHHHHHHHHHHhccCCCCchHHHHHHH
Confidence 1244444433 3345566666666666667777776 567777888
Q ss_pred HHhhHHHHHHHHHHHHHHHHH
Q 024845 183 LIRGRTKLRQAGKQIQGVINS 203 (261)
Q Consensus 183 ~~rGrtkLr~ag~qiq~l~~s 203 (261)
+.|.-.....+-.||-++=+.
T Consensus 140 LvraEae~lvaEAqL~n~kR~ 160 (234)
T 3plt_A 140 LVRAEAESLVAEAQLSNITRE 160 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHhHHH
Confidence 888877777777777655443
No 50
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=23.08 E-value=2e+02 Score=20.13 Aligned_cols=42 Identities=14% Similarity=0.233 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 024845 148 LSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTK 189 (261)
Q Consensus 148 l~~Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtk 189 (261)
+.....+|..|...|+.|+.+...|..-+..|.+|-.|.-.-
T Consensus 6 i~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RAN~R 47 (52)
T 1jcd_A 6 ADQASSDAQTANAKADQASNDANAARSDAQAAKDDAARANQR 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445567788888888888888888887777777776665443
No 51
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=23.01 E-value=4.5e+02 Score=26.40 Aligned_cols=30 Identities=3% Similarity=0.114 Sum_probs=14.6
Q ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHHhhhh
Q 024845 227 SRFRSQVSNIASEAKRERNALTKEVSKISN 256 (261)
Q Consensus 227 ~~LRseVAs~AS~vK~qR~aL~k~l~KIs~ 256 (261)
..|+.+|-+-.+.++.-|++|..-+.||-.
T Consensus 120 qyLKekVdnQlsnIrvLQsnLedq~~kIQR 149 (562)
T 3ghg_A 120 EVLKRKVIEKVQHIQLLQKNVRAQLVDMKR 149 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444445555555555555543
No 52
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=22.86 E-value=1.6e+02 Score=19.59 Aligned_cols=28 Identities=25% Similarity=0.412 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024845 148 LSRADTKVKQLRQSIDRLKAESEKLEKV 175 (261)
Q Consensus 148 l~~Ae~~v~eLr~svdl~k~Es~KL~er 175 (261)
.+.-+.+|++|-..-..+.+|..+|.+-
T Consensus 3 MnQLE~KVEeLl~~~~~Le~eV~RLk~l 30 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLKNKVARLKKK 30 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3556778888888888888888777653
No 53
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=22.37 E-value=5.4e+02 Score=24.89 Aligned_cols=89 Identities=10% Similarity=0.030 Sum_probs=43.3
Q ss_pred HHHhhhhhcCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 024845 134 YYNTLRLFASEE--SLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAED---ELIRGRTKLRQAGKQIQGVINSAYKIE 208 (261)
Q Consensus 134 ~r~TlgrF~SEE--all~~Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~---E~~rGrtkLr~ag~qiq~l~~s~yk~E 208 (261)
-.+-..|+.+.+ +-+...+.+..+++..++.+++|...+-+....+-+ +...=..+.++-+.+|..+-.....+|
T Consensus 19 ~~~~~~R~~~~~~~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~ 98 (485)
T 3qne_A 19 KASQKKRGDSVELVDEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEAD 98 (485)
T ss_dssp HHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445665543 334455566666666666666666666554432210 111111223334445555555555566
Q ss_pred HHHhhHHHHhccCC
Q 024845 209 RQAAGLKDIVGELP 222 (261)
Q Consensus 209 ~~A~gL~d~Lr~LP 222 (261)
.+-..++-.|--||
T Consensus 99 ~~~~~~l~~iPN~~ 112 (485)
T 3qne_A 99 KNLRSKINQVGNIV 112 (485)
T ss_dssp HHHHHHHTTSCCCC
T ss_pred HHHHHHHHhCCCCC
Confidence 55555554444443
No 54
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=22.23 E-value=6e+02 Score=25.52 Aligned_cols=84 Identities=18% Similarity=0.207 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhHHHHhccCCchHHHHHHHH
Q 024845 154 KVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAY-KIERQAAGLKDIVGELPRREASRFRSQ 232 (261)
Q Consensus 154 ~v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr~ag~qiq~l~~s~y-k~E~~A~gL~d~Lr~LP~reA~~LRse 232 (261)
.+++||..++.+ ..+.+=-+.....-.|+.+++ +.+.+ +..+..+.+. .+|++-..|+..+..-= ..=..||+-
T Consensus 65 rINELKnqLEdl-sKnsKdseqy~k~~~E~Lr~r--q~q~~-dNdNtynE~S~ELRRrIqyLKekVdnQl-snIrvLQsn 139 (562)
T 3ghg_A 65 RINKLKNSLFEY-QKNNKDSHSLTTNIMEILRGD--FSSAN-NRDNTYNRVSEDLRSRIEVLKRKVIEKV-QHIQLLQKN 139 (562)
T ss_dssp HHHHHHHHHTHH-HHHHHHHHHHHHHHHHTTSSH--HHHHH-HHHHHHHHTTHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHH-HhhchhHHHHHHHHHHHHHHH--HHhhh-ccchhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 344555555544 222222233333344444443 34444 6777777766 77777777777665322 233445555
Q ss_pred HhHhHHHHHH
Q 024845 233 VSNIASEAKR 242 (261)
Q Consensus 233 VAs~AS~vK~ 242 (261)
|..+-+++++
T Consensus 140 Ledq~~kIQR 149 (562)
T 3ghg_A 140 VRAQLVDMKR 149 (562)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555444444
No 55
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=21.89 E-value=1.3e+02 Score=19.72 Aligned_cols=26 Identities=27% Similarity=0.350 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024845 149 SRADTKVKQLRQSIDRLKAESEKLEK 174 (261)
Q Consensus 149 ~~Ae~~v~eLr~svdl~k~Es~KL~e 174 (261)
+.-|.+|++|-..-..+.+|..+|.+
T Consensus 3 ~QLE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 3 AQLEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 45678999999999999999888864
No 56
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=21.58 E-value=3.2e+02 Score=25.36 Aligned_cols=37 Identities=19% Similarity=0.126 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 024845 157 QLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQA 193 (261)
Q Consensus 157 eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr~a 193 (261)
.|+..++.++.+...|++....++.++..=..+|+..
T Consensus 7 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 43 (403)
T 4etp_A 7 ALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKE 43 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444433
No 57
>1qu7_A Methyl-accepting chemotaxis protein I; serine, four helical-bundle, signaling protein; 2.60A {Escherichia coli} SCOP: h.4.5.1
Probab=21.26 E-value=3.8e+02 Score=22.69 Aligned_cols=62 Identities=18% Similarity=0.299 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 024845 148 LSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIER 209 (261)
Q Consensus 148 l~~Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr~ag~qiq~l~~s~yk~E~ 209 (261)
+......+++|..+++..........+.+..+.+....|...+.+....+..|..++-+|..
T Consensus 9 ~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~s~~I~~ 70 (227)
T 1qu7_A 9 LEQTAASMEQLTATVKQNAENARQASHLALSASETAQRGGKVVDNVVQTMRDISTSSQKIAD 70 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556678888888888888888888888888888899998888888888877666555543
No 58
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=21.08 E-value=2.5e+02 Score=21.18 Aligned_cols=49 Identities=16% Similarity=0.221 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 024845 155 VKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINS 203 (261)
Q Consensus 155 v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr~ag~qiq~l~~s 203 (261)
.+++-+.+..+..+-+-|++++...|.++...+.+=.....+|++++..
T Consensus 8 ~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~ 56 (79)
T 3cvf_A 8 REETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQL 56 (79)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666677777788888888888888888777777777777544
No 59
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=20.41 E-value=4.5e+02 Score=24.82 Aligned_cols=76 Identities=16% Similarity=0.115 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhccCC
Q 024845 147 LLSRADTKVKQLRQSIDRLKAESEKLEKVALVAE---DELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIVGELP 222 (261)
Q Consensus 147 ll~~Ae~~v~eLr~svdl~k~Es~KL~eraa~AE---~E~~rGrtkLr~ag~qiq~l~~s~yk~E~~A~gL~d~Lr~LP 222 (261)
-+...+.+..++...++.+++|...+-+....+- ++...=..+.+.-+.+|..+-.....+|.+-..++-.|--||
T Consensus 32 ~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~~ 110 (455)
T 2dq0_A 32 EILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKIDYYLWRLPNIT 110 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 3444555566666666666666665555543210 111111233344455566666666666666665555555554
No 60
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=20.31 E-value=1.4e+02 Score=23.60 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 024845 154 KVKQLRQSIDRLKAESEKLEKVA 176 (261)
Q Consensus 154 ~v~eLr~svdl~k~Es~KL~era 176 (261)
+|+.|...+..+++|.++|....
T Consensus 33 ~v~~l~~e~k~l~ke~~~l~~~~ 55 (171)
T 2zvf_A 33 TVERFFEEWKDQRKEIERLKSVI 55 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444443
Done!