Query 024845
Match_columns 261
No_of_seqs 34 out of 36
Neff 3.3
Searched_HMMs 13730
Date Mon Mar 25 15:25:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024845.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/024845hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1k4ta1 a.2.8.1 (A:641-712) Eu 65.9 17 0.0012 25.7 7.9 60 154-213 3-67 (72)
2 d1jt6a2 a.121.1.1 (A:73-187) M 39.9 17 0.0012 26.4 4.5 42 78-119 37-81 (115)
3 d2oufa1 a.292.1.1 (A:13-92) Hy 25.5 32 0.0023 24.5 3.7 26 161-186 14-40 (80)
4 d1fxkc_ a.2.5.1 (C:) Prefoldin 25.3 1.1E+02 0.0077 21.6 6.8 38 148-185 90-127 (133)
5 d1krqa_ a.25.1.1 (A:) Non-hem 22.4 1.4E+02 0.01 21.9 8.3 38 35-76 83-120 (165)
6 d1ez3a_ a.47.2.1 (A:) Syntaxin 20.9 1.3E+02 0.0094 21.0 8.0 21 153-173 10-30 (124)
7 d1seta1 a.2.7.1 (A:1-110) Sery 20.0 1.3E+02 0.0095 20.7 9.2 32 146-177 28-59 (110)
8 d1ek9a_ f.5.1.1 (A:) Integral 19.4 1.9E+02 0.014 22.4 10.5 14 209-222 395-408 (428)
9 d1rcda_ a.25.1.1 (A:) (Apo)fer 18.3 1.7E+02 0.013 21.4 9.8 56 35-100 91-147 (171)
10 d1fxka_ a.2.5.1 (A:) Prefoldin 18.2 1.2E+02 0.0091 20.9 5.8 96 72-192 7-104 (107)
No 1
>d1k4ta1 a.2.8.1 (A:641-712) Eukaryotic DNA topoisomerase I, dispensable insert domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=65.86 E-value=17 Score=25.70 Aligned_cols=60 Identities=20% Similarity=0.199 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHH----HHHHHHHHHHHHHHHHHHHhh
Q 024845 154 KVKQLRQSIDRLKAESEKLEKVALVAEDELI-RGRTKLRQ----AGKQIQGVINSAYKIERQAAG 213 (261)
Q Consensus 154 ~v~eLr~svdl~k~Es~KL~eraa~AE~E~~-rGrtkLr~----ag~qiq~l~~s~yk~E~~A~g 213 (261)
.+.-|+..|+.-+..+.-...-+--|..++. +|-.+.+. -.+++++|--+..|.|-+|++
T Consensus 3 sMenLq~KI~~Kk~qi~~a~~e~K~ak~d~k~~~~~k~k~~~ekKkK~leRL~EQL~KLevqaTD 67 (72)
T d1k4ta1 3 SMMNLQTKIDAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATD 67 (72)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 3444555555444444444444444444444 44433333 578999999999999999875
No 2
>d1jt6a2 a.121.1.1 (A:73-187) Multidrug binding protein QacR {Staphylococcus aureus [TaxId: 1280]}
Probab=39.86 E-value=17 Score=26.43 Aligned_cols=42 Identities=19% Similarity=-0.024 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHH---HhhhChhhhhHHHH
Q 024845 78 TLDYLQDVKSEYAAYEDAAVGKVKEGIH---VAASHPFITAGGAI 119 (261)
Q Consensus 78 ~~~~l~~~~sey~~yEd~~f~kiKegv~---~A~~hP~~a~g~a~ 119 (261)
..+.++.+..-++.||+.|-.-|++|+. ....+|-+++-...
T Consensus 37 ~~e~~~~i~~lr~~y~~~~~~Ii~eGi~~G~f~~~d~~~~~~~il 81 (115)
T d1jt6a2 37 TNSINEKMNKLENKYIDAYHVIFKEGNLNGEWSINDVNAVSKIAA 81 (115)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCCSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCceeccCHHHHHHHHH
Confidence 3467888888999999999999999997 45558876654433
No 3
>d2oufa1 a.292.1.1 (A:13-92) Hypothetical protein HP0242 {Helicobacter pylori [TaxId: 210]}
Probab=25.47 E-value=32 Score=24.47 Aligned_cols=26 Identities=23% Similarity=0.133 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-Hhh
Q 024845 161 SIDRLKAESEKLEKVALVAEDEL-IRG 186 (261)
Q Consensus 161 svdl~k~Es~KL~eraa~AE~E~-~rG 186 (261)
+=++.++|+.|+.+|+++.|.=+ ++|
T Consensus 14 n~~lv~~ELek~lerlaamE~l~E~~~ 40 (80)
T d2oufa1 14 SKKLSKKELERLLELLALLETFIEKED 40 (80)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34788999999999999999877 565
No 4
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=25.25 E-value=1.1e+02 Score=21.60 Aligned_cols=38 Identities=3% Similarity=0.199 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024845 148 LSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIR 185 (261)
Q Consensus 148 l~~Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~E~~r 185 (261)
..-.+++.++|+..++.+.++..++.+.+...+.++.+
T Consensus 90 ~~~l~~ri~~l~~~~~~l~~~~~~~~~~i~~l~~~~~~ 127 (133)
T d1fxkc_ 90 MESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEE 127 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888888888888888888877766666543
No 5
>d1krqa_ a.25.1.1 (A:) Non-hem ferritin {Campylobacter jejuni [TaxId: 197]}
Probab=22.36 E-value=1.4e+02 Score=21.86 Aligned_cols=38 Identities=11% Similarity=0.218 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhhhhhhHHH
Q 024845 35 IDNAVQQVMIYRKIVEESIDSAIEASRSRLSQTRLTASVHFQ 76 (261)
Q Consensus 35 ~~~a~~qa~~~qk~~~~s~d~ai~a~~sr~s~~~~ts~~h~~ 76 (261)
+..++.+|+-+.+.+.++....++.|.. ..|..+.||=
T Consensus 83 ~~~~l~~al~~E~~v~~~~~~l~~~A~~----~~D~~t~~fl 120 (165)
T d1krqa_ 83 LLDVFEKTYEHEQFITKSINTLVEHMLT----HKDYSTFNFL 120 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----TTCHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCCccHHHHH
Confidence 6789999999999999999999999987 5666655553
No 6
>d1ez3a_ a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=20.93 E-value=1.3e+02 Score=20.97 Aligned_cols=21 Identities=24% Similarity=0.523 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 024845 153 TKVKQLRQSIDRLKAESEKLE 173 (261)
Q Consensus 153 ~~v~eLr~svdl~k~Es~KL~ 173 (261)
.+|.+.+..|+.++....++.
T Consensus 10 ~eV~~Ir~~I~~i~~~v~~i~ 30 (124)
T d1ez3a_ 10 EQVEEIRGFIDKIAENVEEVK 30 (124)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777776666654
No 7
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=20.03 E-value=1.3e+02 Score=20.71 Aligned_cols=32 Identities=19% Similarity=0.356 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024845 146 SLLSRADTKVKQLRQSIDRLKAESEKLEKVAL 177 (261)
Q Consensus 146 all~~Ae~~v~eLr~svdl~k~Es~KL~eraa 177 (261)
.-|...+.+..++.+.++.+++|...+-+.+.
T Consensus 28 d~i~~ld~~rr~l~~~~e~l~~~rN~~sk~i~ 59 (110)
T d1seta1 28 EALLALDREVQELKKRLQEVQTERNQVAKRVP 59 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777888888888888777765553
No 8
>d1ek9a_ f.5.1.1 (A:) Integral outer membrane protein TolC, efflux pump component {Escherichia coli [TaxId: 562]}
Probab=19.39 E-value=1.9e+02 Score=22.42 Aligned_cols=14 Identities=21% Similarity=0.344 Sum_probs=5.5
Q ss_pred HHHhhHHHHhccCC
Q 024845 209 RQAAGLKDIVGELP 222 (261)
Q Consensus 209 ~~A~gL~d~Lr~LP 222 (261)
.+...|...++.|+
T Consensus 395 ~a~~~L~~~~G~L~ 408 (428)
T d1ek9a_ 395 INQLNIKSALGTLN 408 (428)
T ss_dssp HHHHHHHHHHTCCC
T ss_pred HHHHHHHHHhCCCC
Confidence 33333333444433
No 9
>d1rcda_ a.25.1.1 (A:) (Apo)ferritin {Bullfrog (Rana catesbeiana) [TaxId: 8400]}
Probab=18.30 E-value=1.7e+02 Score=21.43 Aligned_cols=56 Identities=14% Similarity=0.070 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHhh
Q 024845 35 IDNAVQQVMIYRKIVEESIDSAIEASRSRLSQTRLTASVHFQQTLDYLQ-DVKSEYAAYEDAAVGKV 100 (261)
Q Consensus 35 ~~~a~~qa~~~qk~~~~s~d~ai~a~~sr~s~~~~ts~~h~~~~~~~l~-~~~sey~~yEd~~f~ki 100 (261)
+..+++.|+-+.|.+.++....++.|.. -.|-.+. ++|+ ++..+-...|+.+=+.|
T Consensus 91 ~~e~~~~al~~Ek~v~~~l~~l~~~a~~----~~D~~~~------~fle~~fl~eQ~e~~~~l~~~l 147 (171)
T d1rcda_ 91 GLEALQTALKLQKSVNQALLDLHAVAAD----KSDPHMT------DFLESPYLSESVETIKKLGDHI 147 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----TTCHHHH------HHHHTTHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH----cCCHHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 6788999999999999999999988875 4454444 4454 35555555555544444
No 10
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=18.18 E-value=1.2e+02 Score=20.90 Aligned_cols=96 Identities=16% Similarity=0.174 Sum_probs=51.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH--hhhhhHHHhhhChhhhhHHHHHHHHhhcccchhHHHHHhhhhhcCHHHHHH
Q 024845 72 SVHFQQTLDYLQDVKSEYAAYEDAAVG--KVKEGIHVAASHPFITAGGAIGLGSFLLKRPRHFLYYNTLRLFASEESLLS 149 (261)
Q Consensus 72 ~~h~~~~~~~l~~~~sey~~yEd~~f~--kiKegv~~A~~hP~~a~g~a~~ag~lll~~PRrfL~r~TlgrF~SEEall~ 149 (261)
.+.|++++..+..+.++...+|...=. .+.+.+.-.. |... |==..|-+|++.|+.
T Consensus 7 ~~~~q~lq~el~~~~~q~~~le~q~~E~~~vl~eL~~l~--~d~~--vyk~vG~vLv~~~~~------------------ 64 (107)
T d1fxka_ 7 LAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAA--DDAE--VYKSSGNILIRVAKD------------------ 64 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC--TTCC--EEEEETTEEEEECHH------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--cccH--HHHHhcchhhcCcHH------------------
Confidence 456777777777776666666654331 2222232221 1111 101234445555542
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 024845 150 RADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQ 192 (261)
Q Consensus 150 ~Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr~ 192 (261)
.-...|...++.+..++++|.+....-+++|..=+.+|+.
T Consensus 65 ---e~~~~l~~~~e~l~~~i~~l~~q~~~l~~~l~~~~~~l~~ 104 (107)
T d1fxka_ 65 ---ELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQE 104 (107)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2235566677777777777777777777777666655543
Done!