Query 024846
Match_columns 261
No_of_seqs 196 out of 1322
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 07:50:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024846.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024846hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0538 Glycolate oxidase [Ene 100.0 1.1E-59 2.5E-64 431.1 15.7 203 35-237 1-242 (363)
2 PLN02493 probable peroxisomal 100.0 4.2E-57 9.1E-62 427.9 17.4 174 34-207 2-175 (367)
3 PLN02535 glycolate oxidase 100.0 1.3E-56 2.8E-61 424.5 17.5 176 32-207 2-177 (364)
4 PRK11197 lldD L-lactate dehydr 100.0 2.9E-56 6.3E-61 424.1 16.2 174 34-207 2-175 (381)
5 TIGR02708 L_lactate_ox L-lacta 100.0 3.5E-55 7.7E-60 414.9 16.7 174 34-207 12-186 (367)
6 cd04736 MDH_FMN Mandelate dehy 100.0 4.1E-55 8.8E-60 413.7 15.2 168 39-207 1-168 (361)
7 cd03332 LMO_FMN L-Lactate 2-mo 100.0 1.2E-54 2.7E-59 413.3 15.8 170 35-204 18-188 (383)
8 cd04737 LOX_like_FMN L-Lactate 100.0 4.5E-54 9.8E-59 405.7 15.3 174 34-207 4-178 (351)
9 cd02922 FCB2_FMN Flavocytochro 100.0 1.8E-51 3.9E-56 387.2 16.4 199 39-237 1-232 (344)
10 PF01070 FMN_dh: FMN-dependent 100.0 8.7E-49 1.9E-53 370.5 12.5 163 45-207 1-163 (356)
11 PLN02979 glycolate oxidase 100.0 1.3E-42 2.8E-47 328.0 13.0 132 76-207 43-174 (366)
12 COG1304 idi Isopentenyl diphos 100.0 2.8E-35 6.1E-40 278.7 9.8 164 39-207 2-165 (360)
13 cd02809 alpha_hydroxyacid_oxid 100.0 1.8E-33 3.8E-38 259.5 15.9 189 39-237 1-191 (299)
14 cd02811 IDI-2_FMN Isopentenyl- 99.3 1E-11 2.2E-16 116.5 7.3 119 70-191 18-151 (326)
15 PRK05437 isopentenyl pyrophosp 99.2 2.9E-11 6.3E-16 114.8 7.6 120 71-190 27-158 (352)
16 TIGR02151 IPP_isom_2 isopenten 99.1 3E-10 6.6E-15 106.9 8.1 119 73-191 22-152 (333)
17 PRK05458 guanosine 5'-monophos 98.0 7.8E-06 1.7E-10 77.4 6.3 67 74-149 7-75 (326)
18 TIGR01306 GMP_reduct_2 guanosi 97.9 3.1E-05 6.7E-10 73.2 8.1 109 73-192 3-118 (321)
19 cd00381 IMPDH IMPDH: The catal 97.1 0.0024 5.1E-08 60.3 8.6 106 73-188 3-114 (325)
20 PRK08649 inosine 5-monophospha 96.9 0.0039 8.4E-08 60.1 8.0 59 73-138 17-77 (368)
21 TIGR01304 IMP_DH_rel_2 IMP deh 94.3 0.16 3.4E-06 49.1 7.6 61 73-139 14-75 (369)
22 TIGR01305 GMP_reduct_1 guanosi 93.8 0.28 6E-06 47.1 8.0 111 73-192 9-131 (343)
23 PRK06843 inosine 5-monophospha 93.1 0.64 1.4E-05 45.6 9.5 69 73-149 11-81 (404)
24 PF00478 IMPDH: IMP dehydrogen 92.2 0.94 2E-05 43.7 9.2 66 73-146 4-73 (352)
25 TIGR00737 nifR3_yhdG putative 90.6 2.2 4.9E-05 39.8 9.9 88 98-192 3-100 (319)
26 PLN02495 oxidoreductase, actin 88.6 4.8 0.0001 39.3 10.6 30 164-193 124-153 (385)
27 cd04739 DHOD_like Dihydroorota 88.5 4.5 9.8E-05 38.1 10.2 37 154-191 100-136 (325)
28 PRK05096 guanosine 5'-monophos 87.5 4.1 8.8E-05 39.3 9.2 69 73-149 10-85 (346)
29 cd02940 DHPD_FMN Dihydropyrimi 86.7 8.3 0.00018 35.7 10.7 40 154-193 100-139 (299)
30 cd04730 NPD_like 2-Nitropropan 84.6 4.3 9.4E-05 35.5 7.5 81 102-189 2-89 (236)
31 PRK07259 dihydroorotate dehydr 84.2 11 0.00025 34.6 10.3 96 91-193 1-131 (301)
32 PTZ00314 inosine-5'-monophosph 81.8 5.8 0.00013 39.8 7.9 108 73-189 19-135 (495)
33 TIGR03151 enACPred_II putative 81.6 5.8 0.00013 37.2 7.4 80 95-188 6-95 (307)
34 cd02810 DHOD_DHPD_FMN Dihydroo 81.0 18 0.00039 32.9 10.2 41 154-195 99-139 (289)
35 cd04740 DHOD_1B_like Dihydroor 79.5 32 0.00069 31.4 11.5 41 154-195 90-130 (296)
36 PRK05567 inosine 5'-monophosph 79.0 6.7 0.00015 39.0 7.2 106 73-187 10-124 (486)
37 TIGR01037 pyrD_sub1_fam dihydr 77.3 39 0.00084 31.0 11.3 95 92-193 1-131 (300)
38 PRK07565 dihydroorotate dehydr 76.4 24 0.00053 33.2 9.9 37 154-191 102-138 (334)
39 PRK08318 dihydropyrimidine deh 75.7 35 0.00076 33.0 11.1 39 154-192 100-138 (420)
40 KOG2335 tRNA-dihydrouridine sy 75.4 7.3 0.00016 37.7 6.1 72 160-238 148-224 (358)
41 PRK10550 tRNA-dihydrouridine s 72.8 18 0.00039 34.1 8.0 83 103-192 1-100 (312)
42 cd00951 KDGDH 5-dehydro-4-deox 71.8 26 0.00056 32.3 8.7 84 103-188 5-102 (289)
43 cd04738 DHOD_2_like Dihydrooro 71.4 11 0.00024 35.4 6.3 46 64-109 10-56 (327)
44 PRK10415 tRNA-dihydrouridine s 71.3 26 0.00056 33.0 8.7 88 98-192 5-102 (321)
45 PRK03620 5-dehydro-4-deoxygluc 69.5 29 0.00064 32.2 8.6 84 103-188 12-109 (303)
46 cd02808 GltS_FMN Glutamate syn 69.1 14 0.0003 35.8 6.6 47 101-149 76-122 (392)
47 PRK02506 dihydroorotate dehydr 68.7 54 0.0012 30.7 10.2 96 91-193 1-132 (310)
48 TIGR00290 MJ0570_dom MJ0570-re 67.7 43 0.00093 30.3 9.0 133 55-194 5-148 (223)
49 cd04722 TIM_phosphate_binding 67.3 57 0.0012 26.4 9.1 73 120-192 13-96 (200)
50 TIGR01858 tag_bisphos_ald clas 66.7 12 0.00026 35.0 5.3 67 117-187 25-102 (282)
51 PRK03170 dihydrodipicolinate s 65.6 49 0.0011 30.2 9.2 85 103-188 6-104 (292)
52 TIGR01302 IMP_dehydrog inosine 65.3 34 0.00074 33.7 8.5 108 74-190 4-120 (450)
53 PLN02274 inosine-5'-monophosph 64.9 22 0.00048 35.8 7.2 106 73-189 23-139 (505)
54 PRK09195 gatY tagatose-bisphos 64.6 13 0.00027 34.9 5.1 68 116-187 26-104 (284)
55 PRK05286 dihydroorotate dehydr 64.1 17 0.00037 34.5 6.0 23 87-109 44-66 (344)
56 PRK11815 tRNA-dihydrouridine s 63.7 54 0.0012 31.0 9.2 91 98-195 6-105 (333)
57 PRK07807 inosine 5-monophospha 63.5 23 0.00049 35.5 6.9 105 73-187 14-126 (479)
58 PRK12738 kbaY tagatose-bisphos 63.4 15 0.00032 34.5 5.3 67 117-187 27-104 (286)
59 cd04728 ThiG Thiazole synthase 62.9 4.7 0.0001 37.2 1.8 84 154-237 90-195 (248)
60 cd00947 TBP_aldolase_IIB Tagat 62.8 16 0.00035 34.1 5.4 69 116-188 21-100 (276)
61 COG2185 Sbm Methylmalonyl-CoA 62.5 60 0.0013 27.6 8.3 88 98-190 10-101 (143)
62 TIGR01303 IMP_DH_rel_1 IMP deh 62.4 28 0.00061 34.8 7.4 69 73-150 13-83 (475)
63 PRK12737 gatY tagatose-bisphos 62.3 17 0.00036 34.1 5.4 67 117-187 27-104 (284)
64 TIGR00289 conserved hypothetic 61.9 56 0.0012 29.5 8.6 131 55-194 5-147 (222)
65 TIGR03679 arCOG00187 arCOG0018 61.1 30 0.00066 30.7 6.7 67 123-194 78-149 (218)
66 PF01116 F_bP_aldolase: Fructo 60.8 11 0.00024 35.2 4.0 68 118-189 27-105 (287)
67 TIGR00683 nanA N-acetylneurami 60.1 61 0.0013 29.9 8.8 85 103-188 5-104 (290)
68 PRK07119 2-ketoisovalerate fer 59.0 33 0.00071 32.8 6.9 69 118-189 7-80 (352)
69 PRK12857 fructose-1,6-bisphosp 58.4 21 0.00046 33.4 5.4 67 117-187 27-104 (284)
70 cd01994 Alpha_ANH_like_IV This 57.8 69 0.0015 27.9 8.3 91 96-194 52-151 (194)
71 PF03060 NMO: Nitronate monoox 57.8 85 0.0019 29.5 9.5 39 95-141 6-44 (330)
72 TIGR03455 HisG_C-term ATP phos 56.0 58 0.0013 25.7 6.8 53 135-187 31-94 (100)
73 PF01645 Glu_synthase: Conserv 55.7 9.2 0.0002 37.2 2.6 40 100-140 63-102 (368)
74 PF00701 DHDPS: Dihydrodipicol 55.0 1E+02 0.0022 28.1 9.2 84 104-188 7-104 (289)
75 PRK08227 autoinducer 2 aldolas 54.9 64 0.0014 29.9 7.9 99 122-238 161-261 (264)
76 PF01902 ATP_bind_4: ATP-bindi 54.4 41 0.00088 30.2 6.4 89 99-194 55-148 (218)
77 TIGR03249 KdgD 5-dehydro-4-deo 54.2 84 0.0018 28.9 8.7 84 103-188 10-107 (296)
78 COG2070 Dioxygenases related t 54.0 1.3E+02 0.0027 28.8 10.0 157 51-234 37-200 (336)
79 TIGR03884 sel_bind_Methan sele 53.6 17 0.00038 27.6 3.2 27 165-191 26-54 (74)
80 PF05226 CHASE2: CHASE2 domain 53.5 17 0.00036 33.3 3.8 32 162-193 59-90 (310)
81 cd04742 NPD_FabD 2-Nitropropan 53.3 75 0.0016 31.5 8.5 83 95-186 8-101 (418)
82 cd00950 DHDPS Dihydrodipicolin 53.0 89 0.0019 28.3 8.5 84 103-187 5-102 (284)
83 PRK05835 fructose-bisphosphate 52.6 31 0.00067 32.8 5.5 70 116-188 25-105 (307)
84 PRK06801 hypothetical protein; 52.1 31 0.00068 32.3 5.4 72 117-194 27-109 (286)
85 PRK08185 hypothetical protein; 51.5 36 0.00078 31.8 5.7 67 117-187 22-98 (283)
86 PF08029 HisG_C: HisG, C-termi 51.5 18 0.00039 27.3 3.1 47 141-187 13-70 (75)
87 PRK00208 thiG thiazole synthas 51.3 8.8 0.00019 35.5 1.6 84 154-237 90-195 (250)
88 cd00408 DHDPS-like Dihydrodipi 51.2 1.1E+02 0.0025 27.5 8.9 85 103-188 2-100 (281)
89 TIGR00167 cbbA ketose-bisphosp 51.1 32 0.0007 32.2 5.4 69 117-188 27-108 (288)
90 PRK07998 gatY putative fructos 50.8 33 0.00071 32.2 5.3 66 118-187 28-104 (283)
91 cd08205 RuBisCO_IV_RLP Ribulos 50.7 1.3E+02 0.0029 28.9 9.7 97 96-194 124-237 (367)
92 PRK08366 vorA 2-ketoisovalerat 49.9 61 0.0013 31.6 7.3 66 118-186 6-78 (390)
93 PRK11081 tRNA guanosine-2'-O-m 49.6 63 0.0014 29.3 6.8 74 113-189 25-99 (229)
94 TIGR00674 dapA dihydrodipicoli 49.2 1.2E+02 0.0026 27.7 8.8 85 103-188 3-101 (285)
95 TIGR00742 yjbN tRNA dihydrouri 48.8 1.1E+02 0.0025 28.8 8.7 83 104-193 2-93 (318)
96 TIGR02313 HpaI-NOT-DapA 2,4-di 48.7 1.5E+02 0.0032 27.4 9.4 85 103-188 5-103 (294)
97 smart00481 POLIIIAc DNA polyme 48.4 23 0.00051 24.9 3.2 27 168-194 16-42 (67)
98 PLN02417 dihydrodipicolinate s 48.3 1.2E+02 0.0027 27.7 8.7 84 104-188 7-104 (280)
99 PRK09627 oorA 2-oxoglutarate-a 48.2 61 0.0013 31.4 6.9 66 119-187 7-77 (375)
100 PRK06806 fructose-bisphosphate 48.1 39 0.00084 31.5 5.4 82 100-182 40-130 (281)
101 PLN02826 dihydroorotate dehydr 47.7 44 0.00095 32.9 5.9 46 62-109 46-91 (409)
102 cd07015 Clp_protease_NfeD Nodu 45.5 29 0.00064 30.0 3.9 33 165-197 14-46 (172)
103 cd08210 RLP_RrRLP Ribulose bis 45.2 1.6E+02 0.0035 28.5 9.3 118 74-193 94-231 (364)
104 TIGR01521 FruBisAldo_II_B fruc 44.8 47 0.001 32.2 5.5 69 117-188 25-104 (347)
105 cd07021 Clp_protease_NfeD_like 44.5 32 0.00069 29.8 4.0 33 165-197 14-46 (178)
106 PRK11840 bifunctional sulfur c 44.2 9.9 0.00021 36.4 0.8 85 153-237 163-269 (326)
107 PRK13399 fructose-1,6-bisphosp 43.9 50 0.0011 31.9 5.5 70 116-188 26-106 (347)
108 PRK08318 dihydropyrimidine deh 42.7 25 0.00053 34.1 3.3 23 163-185 176-198 (420)
109 COG0107 HisF Imidazoleglycerol 42.4 71 0.0015 29.6 5.9 67 122-192 64-133 (256)
110 PRK08659 2-oxoglutarate ferred 42.2 82 0.0018 30.5 6.8 66 118-186 7-77 (376)
111 cd06557 KPHMT-like Ketopantoat 42.1 78 0.0017 29.2 6.3 25 164-188 152-179 (254)
112 PRK09622 porA pyruvate flavodo 41.8 90 0.002 30.5 7.1 67 118-187 13-86 (407)
113 cd08585 GDPD_like_3 Glyceropho 41.5 79 0.0017 28.2 6.2 26 168-193 196-222 (237)
114 PRK08610 fructose-bisphosphate 41.1 62 0.0013 30.4 5.6 68 117-187 27-107 (286)
115 cd00945 Aldolase_Class_I Class 40.6 1.9E+02 0.0041 23.8 8.0 72 117-190 11-88 (201)
116 PRK12855 hypothetical protein; 40.5 34 0.00073 27.5 3.2 27 166-192 59-86 (103)
117 PRK09196 fructose-1,6-bisphosp 39.3 63 0.0014 31.2 5.4 69 117-188 27-106 (347)
118 PRK01130 N-acetylmannosamine-6 39.2 1.1E+02 0.0024 26.6 6.7 63 122-187 26-95 (221)
119 PF01906 YbjQ_1: Putative heav 38.9 37 0.00081 26.7 3.2 26 166-191 59-85 (105)
120 KOG1436 Dihydroorotate dehydro 38.5 11 0.00025 36.3 0.3 44 64-109 58-101 (398)
121 PRK02877 hypothetical protein; 38.1 38 0.00083 27.2 3.2 29 166-194 59-88 (106)
122 TIGR02814 pfaD_fam PfaD family 37.8 1.5E+02 0.0033 29.6 7.9 84 95-186 13-106 (444)
123 PRK07709 fructose-bisphosphate 37.7 86 0.0019 29.4 6.0 68 117-187 27-107 (285)
124 PRK04147 N-acetylneuraminate l 37.4 2.2E+02 0.0048 26.1 8.6 85 103-188 8-107 (293)
125 cd04741 DHOD_1A_like Dihydroor 37.0 2.9E+02 0.0062 25.5 9.3 38 154-193 92-132 (294)
126 PRK12595 bifunctional 3-deoxy- 36.7 88 0.0019 30.2 6.0 32 119-150 169-200 (360)
127 cd00954 NAL N-Acetylneuraminic 35.7 2.7E+02 0.0059 25.4 8.9 84 103-187 5-103 (288)
128 PRK13397 3-deoxy-7-phosphohept 35.6 99 0.0021 28.5 5.9 76 109-188 57-157 (250)
129 PRK12856 hypothetical protein; 35.3 45 0.00099 26.7 3.2 28 166-193 59-87 (103)
130 PRK07084 fructose-bisphosphate 35.2 75 0.0016 30.4 5.2 68 117-187 33-115 (321)
131 PRK08367 porA pyruvate ferredo 35.1 1.6E+02 0.0035 28.7 7.6 67 118-187 7-80 (394)
132 cd04740 DHOD_1B_like Dihydroor 35.0 60 0.0013 29.7 4.4 24 163-186 162-185 (296)
133 cd04741 DHOD_1A_like Dihydroor 34.8 47 0.001 30.8 3.7 83 155-237 159-263 (294)
134 PRK01119 hypothetical protein; 34.7 47 0.001 26.7 3.2 29 166-194 59-88 (106)
135 COG0393 Uncharacterized conser 34.2 47 0.001 27.0 3.1 28 167-194 60-88 (108)
136 PRK08673 3-deoxy-7-phosphohept 33.8 1.1E+02 0.0024 29.3 6.1 29 122-150 147-175 (335)
137 cd02810 DHOD_DHPD_FMN Dihydroo 33.6 3.5E+02 0.0076 24.4 9.2 31 157-187 166-196 (289)
138 cd02940 DHPD_FMN Dihydropyrimi 33.4 69 0.0015 29.6 4.6 76 162-237 175-272 (299)
139 COG0329 DapA Dihydrodipicolina 33.1 2.6E+02 0.0056 26.1 8.4 86 102-188 8-107 (299)
140 PRK00489 hisG ATP phosphoribos 31.9 1.6E+02 0.0034 27.1 6.6 49 139-187 221-280 (287)
141 COG5461 Type IV pili component 31.4 1.3E+02 0.0027 27.3 5.6 35 210-244 177-212 (224)
142 cd08600 GDPD_EcGlpQ_like Glyce 31.3 2.1E+02 0.0046 26.8 7.5 23 170-192 266-288 (318)
143 cd08573 GDPD_GDE1 Glycerophosp 30.8 1.4E+02 0.0031 26.9 6.1 26 168-193 216-241 (258)
144 PRK01217 hypothetical protein; 30.7 59 0.0013 26.5 3.2 29 166-194 66-95 (114)
145 cd02801 DUS_like_FMN Dihydrour 30.7 3.5E+02 0.0076 23.3 9.0 83 104-193 1-93 (231)
146 cd07020 Clp_protease_NfeD_1 No 30.6 77 0.0017 27.2 4.2 30 165-194 14-43 (187)
147 TIGR01362 KDO8P_synth 3-deoxy- 30.5 40 0.00088 31.3 2.5 99 6-133 102-215 (258)
148 PRK00967 hypothetical protein; 30.5 61 0.0013 25.9 3.2 28 166-193 59-87 (105)
149 cd08612 GDPD_GDE4 Glycerophosp 30.1 1.1E+02 0.0024 28.2 5.4 25 168-192 249-273 (300)
150 PRK13398 3-deoxy-7-phosphohept 30.0 1.5E+02 0.0034 27.3 6.3 33 118-150 77-109 (266)
151 COG1879 RbsB ABC-type sugar tr 30.0 1.7E+02 0.0037 26.5 6.6 68 121-192 52-128 (322)
152 cd08601 GDPD_SaGlpQ_like Glyce 29.2 2E+02 0.0044 25.5 6.8 22 169-190 207-228 (256)
153 cd04795 SIS SIS domain. SIS (S 29.0 2.1E+02 0.0046 20.2 6.8 28 160-187 54-81 (87)
154 cd08559 GDPD_periplasmic_GlpQ_ 29.0 1.9E+02 0.004 26.7 6.7 21 170-190 246-266 (296)
155 PRK13396 3-deoxy-7-phosphohept 28.9 1.3E+02 0.0028 29.2 5.7 31 120-150 153-183 (352)
156 COG4252 Predicted transmembran 28.8 66 0.0014 31.7 3.7 31 162-192 78-108 (400)
157 TIGR01859 fruc_bis_ald_ fructo 28.6 1.3E+02 0.0028 27.9 5.6 55 127-181 68-129 (282)
158 TIGR03710 OAFO_sf 2-oxoacid:ac 28.4 1.5E+02 0.0033 30.2 6.4 67 118-187 196-267 (562)
159 PF01068 DNA_ligase_A_M: ATP d 28.0 1.9E+02 0.0041 24.4 6.1 43 154-196 150-194 (202)
160 PF01180 DHO_dh: Dihydroorotat 27.6 58 0.0013 29.9 3.0 18 92-109 2-19 (295)
161 TIGR00222 panB 3-methyl-2-oxob 27.4 1.8E+02 0.0039 27.0 6.2 27 163-189 153-182 (263)
162 TIGR01036 pyrD_sub2 dihydrooro 27.3 92 0.002 29.6 4.4 44 86-137 41-84 (335)
163 cd08568 GDPD_TmGDE_like Glycer 27.2 1.9E+02 0.004 25.2 6.1 22 170-191 184-205 (226)
164 TIGR03151 enACPred_II putative 27.1 2.5E+02 0.0054 26.3 7.2 58 122-188 77-137 (307)
165 PF06506 PrpR_N: Propionate ca 26.8 1.6E+02 0.0034 25.0 5.3 81 100-187 51-132 (176)
166 COG0042 tRNA-dihydrouridine sy 26.6 84 0.0018 29.8 4.0 85 145-237 127-218 (323)
167 PRK07315 fructose-bisphosphate 26.6 1.6E+02 0.0035 27.5 5.8 17 122-138 32-48 (293)
168 COG1030 NfeD Membrane-bound se 26.5 80 0.0017 31.5 3.9 28 166-193 42-69 (436)
169 cd04743 NPD_PKS 2-Nitropropane 26.4 3.3E+02 0.0071 26.1 7.9 84 102-191 2-93 (320)
170 PRK03732 hypothetical protein; 26.2 80 0.0017 25.8 3.2 27 166-192 66-93 (114)
171 PRK05198 2-dehydro-3-deoxyphos 26.1 48 0.001 30.9 2.2 99 6-133 110-223 (264)
172 COG1606 ATP-utilizing enzymes 25.8 70 0.0015 29.9 3.2 28 172-199 33-61 (269)
173 PRK06806 fructose-bisphosphate 25.7 3.1E+02 0.0068 25.5 7.5 103 35-148 3-113 (281)
174 PRK11858 aksA trans-homoaconit 25.5 4.7E+02 0.01 25.1 8.9 13 170-182 119-131 (378)
175 TIGR03336 IOR_alpha indolepyru 25.5 1.9E+02 0.0042 29.5 6.6 71 119-193 6-81 (595)
176 PLN02858 fructose-bisphosphate 25.4 1.3E+02 0.0029 34.1 5.8 62 122-187 1128-1199(1378)
177 cd00952 CHBPH_aldolase Trans-o 25.2 5.6E+02 0.012 23.8 9.4 72 116-188 26-111 (309)
178 PRK02227 hypothetical protein; 24.5 3.6E+02 0.0077 24.8 7.4 109 116-235 64-196 (238)
179 PLN02424 ketopantoate hydroxym 24.4 1.3E+02 0.0027 29.1 4.7 25 164-188 176-203 (332)
180 COG2102 Predicted ATPases of P 24.2 1.8E+02 0.0039 26.5 5.4 94 94-195 51-150 (223)
181 PRK10550 tRNA-dihydrouridine s 24.1 1.4E+02 0.0031 28.0 5.0 22 167-188 148-169 (312)
182 cd07896 Adenylation_kDNA_ligas 24.0 3E+02 0.0065 22.9 6.6 40 158-197 126-166 (174)
183 KOG1541 Predicted protein carb 23.9 81 0.0018 29.3 3.2 39 154-194 154-192 (270)
184 PLN02775 Probable dihydrodipic 23.5 1.4E+02 0.0031 28.0 4.8 82 57-141 16-113 (286)
185 TIGR01361 DAHP_synth_Bsub phos 23.4 2.1E+02 0.0046 26.2 5.9 31 121-151 121-151 (260)
186 PF03102 NeuB: NeuB family; I 23.3 87 0.0019 28.6 3.3 55 121-176 102-167 (241)
187 cd00953 KDG_aldolase KDG (2-ke 23.3 5.7E+02 0.012 23.3 9.0 80 106-188 8-99 (279)
188 PRK00311 panB 3-methyl-2-oxobu 23.2 2.5E+02 0.0055 26.0 6.4 25 163-187 154-181 (264)
189 TIGR01361 DAHP_synth_Bsub phos 22.8 2.5E+02 0.0053 25.8 6.2 66 119-187 76-166 (260)
190 PF02811 PHP: PHP domain; Int 22.7 83 0.0018 25.4 2.8 27 168-194 17-43 (175)
191 PF03599 CdhD: CO dehydrogenas 22.7 2.7E+02 0.0058 27.5 6.6 86 101-196 97-185 (386)
192 COG2121 Uncharacterized protei 22.6 3.6E+02 0.0078 24.5 6.9 24 117-141 77-100 (214)
193 PF08628 Nexin_C: Sorting nexi 22.2 1.1E+02 0.0024 24.0 3.3 70 5-76 38-107 (113)
194 cd00308 enolase_like Enolase-s 21.9 3.6E+02 0.0079 23.4 6.9 63 122-185 135-201 (229)
195 TIGR00284 dihydropteroate synt 21.9 2.8E+02 0.0061 28.1 6.9 65 121-187 217-286 (499)
196 PRK15408 autoinducer 2-binding 21.8 3.5E+02 0.0075 25.3 7.1 68 119-190 40-115 (336)
197 PRK06361 hypothetical protein; 21.2 99 0.0021 26.7 3.1 24 168-191 11-34 (212)
198 PF01113 DapB_N: Dihydrodipico 20.8 1E+02 0.0022 24.7 2.9 42 116-157 75-118 (124)
199 cd03317 NAAAR N-acylamino acid 20.7 4.1E+02 0.0088 24.8 7.4 62 122-184 218-283 (354)
200 TIGR03572 WbuZ glycosyl amidat 20.7 4.9E+02 0.011 22.7 7.5 66 123-192 65-133 (232)
201 PF13407 Peripla_BP_4: Peripla 20.6 1.2E+02 0.0025 26.1 3.4 70 116-189 12-89 (257)
202 PF05036 SPOR: Sporulation rel 20.3 1.8E+02 0.0038 20.1 3.8 32 154-185 3-34 (76)
203 cd05013 SIS_RpiR RpiR-like pro 20.2 3.9E+02 0.0085 20.2 6.7 38 154-191 61-98 (139)
204 PLN02681 proline dehydrogenase 20.1 5.1E+02 0.011 25.9 8.2 61 122-182 223-297 (455)
205 PRK13957 indole-3-glycerol-pho 20.0 1.5E+02 0.0033 27.2 4.2 69 165-234 136-218 (247)
No 1
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=100.00 E-value=1.1e-59 Score=431.13 Aligned_cols=203 Identities=58% Similarity=0.869 Sum_probs=191.0
Q ss_pred CCCHHHHHHHHHhhCChhhhhhhcCCccchhcHHHHHHHhhccccccccccCCCCCCcceeeCCcccCcceeeccccccc
Q 024846 35 PVNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHK 114 (261)
Q Consensus 35 ~~~l~D~e~~Ar~~Lp~~~~~Y~~gGa~de~T~~~N~~Af~ri~L~pRvL~dv~~~DtsttllG~~ls~Pi~iAP~g~~~ 114 (261)
++|+.|||+.|+++||+.+|+||.|||+|+.|+++|++||.||+|+||+|+||+.+|+||++||+++++||+|||+|+++
T Consensus 1 lv~~~dfe~~A~~~L~K~a~dyy~sgA~d~~Tl~~N~~AF~ri~~rPr~L~dVs~iD~sTtvlG~~i~~Pi~iapTa~qk 80 (363)
T KOG0538|consen 1 LVNVDDFEALAKQQLPKMAYDYYESGAEDQETLDENINAFRRILFRPRILRDVSKIDTSTTVLGQKISAPIMIAPTAMQK 80 (363)
T ss_pred CccHHHHHHHHHHhhhHHHHHHHhcCCcchhhHHHHHHHHHhhhccchhheecccccccceeccccccceeEEcchHHHh
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCchhhHHHHHHHHhcCCceeecCCCCCcHHHHHhhcC-CceeEEEeeecCHHHHHHHHHHHHHcCCcEEEEeecCCCC
Q 024846 115 LANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAASCN-AVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRL 193 (261)
Q Consensus 115 l~hp~gE~alArAA~~~Gi~~~lSs~ss~sleeIa~~~~-~~~wfQLy~~~dr~~~~~li~rAe~aG~~AlvvTVD~p~~ 193 (261)
|+||+||.++||||+++|++|++||.+++|+|||++++| +++|||||+++||+.+++|++|||++||+||+||||+|++
T Consensus 81 ma~pdGE~~taraa~~~~~~~i~Ss~at~S~EdI~~aap~~~rwfQLYvykdr~It~~Lv~raEk~GfkAlvlTvDtP~l 160 (363)
T KOG0538|consen 81 MAHPDGELATARAAQAAGTIMILSSWATCSVEDIASAAPPGIRWFQLYVYKDRDITEQLVKRAEKAGFKALVLTVDTPRL 160 (363)
T ss_pred ccCCcccHHHHHHHHhcCCcEEEechhcCCHHHHHhhCCCCcEEEEEEecCchHHHHHHHHHHHHcCceEEEEEeccccc
Confidence 999999999999999999999999999999999999995 9999999999999999999999999999999999999999
Q ss_pred CCchhHhhcCCCCC---Ccccccccccc----------------------------------ccccccccccCcccch-h
Q 024846 194 GRREADIKNKMITP---PLKNLEGLLST----------------------------------KVSSVRILKLMPRDHG-C 235 (261)
Q Consensus 194 G~Rerd~r~~f~~P---~~~~l~~~~~~----------------------------------~~~~~~k~~m~~~d~~-~ 235 (261)
|+|+.|+||+|.+| +++||++.... .+|-+.||+||-+||. |
T Consensus 161 G~R~~D~~n~f~lp~~l~lknfe~~~~~~v~~~~~sg~~~~~~~~id~Sl~W~Di~wLr~~T~LPIvvKGilt~eDA~~A 240 (363)
T KOG0538|consen 161 GRRESDIKNKFSLPKNLTLKNFEGLKLTEVEEAGDSGLAAYVSSQIDPSLSWKDIKWLRSITKLPIVVKGVLTGEDARKA 240 (363)
T ss_pred cCchhhhhhcccCCcccccccccccccccCCcccchhhhhhhhcCCCCCCChhhhHHHHhcCcCCeEEEeecccHHHHHH
Confidence 99999999999999 67787654210 4456688899999988 6
Q ss_pred hh
Q 024846 236 FF 237 (261)
Q Consensus 236 ~~ 237 (261)
++
T Consensus 241 ve 242 (363)
T KOG0538|consen 241 VE 242 (363)
T ss_pred HH
Confidence 65
No 2
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=100.00 E-value=4.2e-57 Score=427.87 Aligned_cols=174 Identities=59% Similarity=0.963 Sum_probs=170.6
Q ss_pred CCCCHHHHHHHHHhhCChhhhhhhcCCccchhcHHHHHHHhhccccccccccCCCCCCcceeeCCcccCcceeecccccc
Q 024846 34 EPVNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALH 113 (261)
Q Consensus 34 ~~~~l~D~e~~Ar~~Lp~~~~~Y~~gGa~de~T~~~N~~Af~ri~L~pRvL~dv~~~DtsttllG~~ls~Pi~iAP~g~~ 113 (261)
+++|++|||+.||++||+.+|+|++||++||.|+++|++||++|+|+||+|+||+++||+|++||+++++||+|||+|++
T Consensus 2 ~~~~i~D~e~~Ar~~lp~~~~~y~~gga~de~t~~~N~~af~r~~l~PRvLrdv~~~d~~t~~lG~~~~~Pi~iAP~g~~ 81 (367)
T PLN02493 2 EITNVTEYDAIAKQKLPKMVYDYYASGAEDQWTLQENRNAFARILFRPRILIDVSKIDMTTTVLGFKISMPIMVAPTAMQ 81 (367)
T ss_pred ccCCHHHHHHHHHHhCCHHHHHHHccCcchhHHHHHHHHHHHhCCeecccccCCCCCCCceEECCccccccceechHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCchhhHHHHHHHHhcCCceeecCCCCCcHHHHHhhcCCceeEEEeeecCHHHHHHHHHHHHHcCCcEEEEeecCCCC
Q 024846 114 KLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRL 193 (261)
Q Consensus 114 ~l~hp~gE~alArAA~~~Gi~~~lSs~ss~sleeIa~~~~~~~wfQLy~~~dr~~~~~li~rAe~aG~~AlvvTVD~p~~ 193 (261)
+++||+||.++||||+++|++|++||.+++|+|||+++.+++.|||||+++|++.++++|+||+++||+||+||||+|+.
T Consensus 82 ~l~hp~gE~a~AraA~~~gi~~~lSt~ss~slEeva~~~~~~~wfQlY~~~Dr~~~~~li~RA~~aG~~alvlTvD~p~~ 161 (367)
T PLN02493 82 KMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRL 161 (367)
T ss_pred hhcCCchHHHHHHHHHHcCCCeeecCcccCCHHHHHhcCCCCcEEEEeecCCHHHHHHHHHHHHHcCCCEEEEEcCCCCC
Confidence 99999999999999999999999999999999999988677899999999999999999999999999999999999999
Q ss_pred CCchhHhhcCCCCC
Q 024846 194 GRREADIKNKMITP 207 (261)
Q Consensus 194 G~Rerd~r~~f~~P 207 (261)
|+|++|+||+|.+|
T Consensus 162 G~R~~d~r~~~~~p 175 (367)
T PLN02493 162 GRRESDIKNRFTLP 175 (367)
T ss_pred CcchhhhcccCCCC
Confidence 99999999999888
No 3
>PLN02535 glycolate oxidase
Probab=100.00 E-value=1.3e-56 Score=424.46 Aligned_cols=176 Identities=81% Similarity=1.225 Sum_probs=172.1
Q ss_pred CCCCCCHHHHHHHHHhhCChhhhhhhcCCccchhcHHHHHHHhhccccccccccCCCCCCcceeeCCcccCcceeecccc
Q 024846 32 AAEPVNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTA 111 (261)
Q Consensus 32 ~~~~~~l~D~e~~Ar~~Lp~~~~~Y~~gGa~de~T~~~N~~Af~ri~L~pRvL~dv~~~DtsttllG~~ls~Pi~iAP~g 111 (261)
.+++++++|||+.||++||+.+|+|++||+++|+|+++|++||++|+|+||+|+||+++||+|+|||+++++||+|||+|
T Consensus 2 ~~~~~~i~d~~~~A~~~lp~~~~~Y~~gga~~e~t~~~N~~af~~~~l~Pr~L~dv~~~d~~t~~lG~~~~~P~~iaP~g 81 (364)
T PLN02535 2 ADEIVNVNEFQELAKQALPKMYYDFYAGGAEDQHTLKENVQAFRRITFRPRVLVDVSKIDMSTTILGYTISAPIMIAPTA 81 (364)
T ss_pred CcccCCHHHHHHHHHHhCCHHHHHHHhcCCcccHHHHHHHHHHHhCCeecccccCCCCCCCceEECCccccccceechHH
Confidence 45778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCchhhHHHHHHHHhcCCceeecCCCCCcHHHHHhhcCCceeEEEeeecCHHHHHHHHHHHHHcCCcEEEEeecCC
Q 024846 112 LHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTP 191 (261)
Q Consensus 112 ~~~l~hp~gE~alArAA~~~Gi~~~lSs~ss~sleeIa~~~~~~~wfQLy~~~dr~~~~~li~rAe~aG~~AlvvTVD~p 191 (261)
+++++||+||.++||||+++|++|++|+.+++|+|||+++.+++.|||||+++|++.++++|+||+++||+||+||||+|
T Consensus 82 ~~~l~hp~gE~a~AraA~~~g~~~~lSt~s~~slEeva~~~~~~~wfQlY~~~dr~~~~~ll~RA~~aG~~alvlTvD~p 161 (364)
T PLN02535 82 MHKLAHPEGEIATARAAAACNTIMVLSFMASCTVEEVASSCNAVRFLQLYVYKRRDIAAQLVQRAEKNGYKAIVLTADVP 161 (364)
T ss_pred HhcccCcchHHHHHHHHHHcCCCeEecCcccCCHHHHHhcCCCCeEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeecCC
Confidence 99999999999999999999999999999999999999877788999999999999999999999999999999999999
Q ss_pred CCCCchhHhhcCCCCC
Q 024846 192 RLGRREADIKNKMITP 207 (261)
Q Consensus 192 ~~G~Rerd~r~~f~~P 207 (261)
+.|+|++|+||+|.+|
T Consensus 162 ~~g~R~~d~r~~~~~p 177 (364)
T PLN02535 162 RLGRREADIKNKMISP 177 (364)
T ss_pred CCCCchhhhhcCCCCc
Confidence 9999999999999887
No 4
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=100.00 E-value=2.9e-56 Score=424.05 Aligned_cols=174 Identities=34% Similarity=0.522 Sum_probs=170.4
Q ss_pred CCCCHHHHHHHHHhhCChhhhhhhcCCccchhcHHHHHHHhhccccccccccCCCCCCcceeeCCcccCcceeecccccc
Q 024846 34 EPVNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALH 113 (261)
Q Consensus 34 ~~~~l~D~e~~Ar~~Lp~~~~~Y~~gGa~de~T~~~N~~Af~ri~L~pRvL~dv~~~DtsttllG~~ls~Pi~iAP~g~~ 113 (261)
.++|++|||+.||++||+.+|+|+.||++||.|+++|++||++|+|+||+|+||+++||+|+|||+++++||+|||+|++
T Consensus 2 ~~~~i~D~~~~Ar~~Lp~~~~~Y~~gga~de~t~~~N~~af~~~~l~PR~L~dv~~~d~~t~llG~~~~~Pi~iAP~g~~ 81 (381)
T PRK11197 2 IISAASDYRAAAQRRLPPFLFHYIDGGAYAEYTLRRNVEDLADIALRQRVLKDMSDLSLETTLFGEKLSMPVALAPVGLT 81 (381)
T ss_pred ccCCHHHHHHHHHHhCCHHHHHHHhcCcchHHHHHHHHHHHHhcceecccccCCCCCCCceEECCcccccchhhChHHHh
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCchhhHHHHHHHHhcCCceeecCCCCCcHHHHHhhcCCceeEEEeeecCHHHHHHHHHHHHHcCCcEEEEeecCCCC
Q 024846 114 KLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRL 193 (261)
Q Consensus 114 ~l~hp~gE~alArAA~~~Gi~~~lSs~ss~sleeIa~~~~~~~wfQLy~~~dr~~~~~li~rAe~aG~~AlvvTVD~p~~ 193 (261)
+++||+||.++||||+++|++|++|+.+++|+|||+++.++..|||||+++|++.++++|+||+++||+|||||||+|+.
T Consensus 82 ~l~hp~gE~~~AraA~~~g~~~~lSt~ss~slEeia~~~~~~~wfQlY~~~Dr~~~~~li~RA~~aG~~alvlTVD~pv~ 161 (381)
T PRK11197 82 GMYARRGEVQAARAADAKGIPFTLSTVSVCPIEEVAPAIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPVP 161 (381)
T ss_pred hccCCchHHHHHHHHHHcCCCEEeeCCCcCCHHHHHhccCCCeEEEEEecCCHHHHHHHHHHHHHcCCCEEEEecCCCCC
Confidence 99999999999999999999999999999999999988777899999999999999999999999999999999999999
Q ss_pred CCchhHhhcCCCCC
Q 024846 194 GRREADIKNKMITP 207 (261)
Q Consensus 194 G~Rerd~r~~f~~P 207 (261)
|+|++|+||+|.+|
T Consensus 162 G~Rerd~rn~~~~p 175 (381)
T PRK11197 162 GARYRDAHSGMSGP 175 (381)
T ss_pred CCChhhhhcCCCCC
Confidence 99999999999877
No 5
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=100.00 E-value=3.5e-55 Score=414.90 Aligned_cols=174 Identities=35% Similarity=0.573 Sum_probs=170.0
Q ss_pred CCCCHHHHHHHHHhhCChhhhhhhcCCccchhcHHHHHHHhhccccccccccCCCCCCcceeeCCcccCcceeecccccc
Q 024846 34 EPVNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALH 113 (261)
Q Consensus 34 ~~~~l~D~e~~Ar~~Lp~~~~~Y~~gGa~de~T~~~N~~Af~ri~L~pRvL~dv~~~DtsttllG~~ls~Pi~iAP~g~~ 113 (261)
+++|+.|||+.||++||+.+|+|++||++||+|+++|++||++|+|+||+|+||+++||+|+|||+++++||+|||+|++
T Consensus 12 ~~~~i~D~~~~A~~~lp~~~~~y~~~ga~de~t~~~N~~af~~~~l~PR~L~dv~~~d~~t~llG~~~~~Pv~iaP~g~~ 91 (367)
T TIGR02708 12 DFINTYDLEEMAQQVIPKGAFGYIASGAGDTFTLRENIRAFNHKLIVPHLLQDVENPSTEIEFLGHKLKSPFIMAPVAAH 91 (367)
T ss_pred CCCCHHHHHHHHHHhCCHHHHHHHhcCCchHHHHHHHHHHHHhcCeecccccCCCCCCCceeeCCcccccccccCcHHHh
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCchhhHHHHHHHHhcCCceeecCCCCCcHHHHHhhc-CCceeEEEeeecCHHHHHHHHHHHHHcCCcEEEEeecCCC
Q 024846 114 KLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAASC-NAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPR 192 (261)
Q Consensus 114 ~l~hp~gE~alArAA~~~Gi~~~lSs~ss~sleeIa~~~-~~~~wfQLy~~~dr~~~~~li~rAe~aG~~AlvvTVD~p~ 192 (261)
+++||+||.++||||+++|++|++|+.+++++|||+++. +++.|||||+++|++.++++|+||+++||+||+||||+|+
T Consensus 92 ~l~~p~gE~~~ArAA~~~g~~~~lSt~ss~slEev~~~~~~~~~wfQlY~~~dr~~~~~li~RA~~aG~~alvlTvD~p~ 171 (367)
T TIGR02708 92 KLANEQGEVATARGVSEFGSIYTTSSYSTADLPEISEALNGTPHWFQFYMSKDDGINRDIMDRVKADGAKAIVLTADATV 171 (367)
T ss_pred hccCCcHHHHHHHHHHHcCCCeeecccccCCHHHHHhhcCCCceEEEEeccCCHHHHHHHHHHHHHcCCCEEEEecCCCC
Confidence 999999999999999999999999999999999999884 5789999999999999999999999999999999999999
Q ss_pred CCCchhHhhcCCCCC
Q 024846 193 LGRREADIKNKMITP 207 (261)
Q Consensus 193 ~G~Rerd~r~~f~~P 207 (261)
+|+|++|+||+|.+|
T Consensus 172 ~g~R~~d~r~~~~~p 186 (367)
T TIGR02708 172 GGNREVDVRNGFVFP 186 (367)
T ss_pred CCcchhhhhcCCCCC
Confidence 999999999999877
No 6
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=100.00 E-value=4.1e-55 Score=413.73 Aligned_cols=168 Identities=44% Similarity=0.689 Sum_probs=164.3
Q ss_pred HHHHHHHHhhCChhhhhhhcCCccchhcHHHHHHHhhccccccccccCCCCCCcceeeCCcccCcceeeccccccccCCc
Q 024846 39 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANP 118 (261)
Q Consensus 39 ~D~e~~Ar~~Lp~~~~~Y~~gGa~de~T~~~N~~Af~ri~L~pRvL~dv~~~DtsttllG~~ls~Pi~iAP~g~~~l~hp 118 (261)
+|||+.||++||+.+|+|++||++||.|+++|++||++|+|+||+|+||+++||+|++||+++++||+|||+|+++++||
T Consensus 1 ~D~~~~Ar~~lp~~~~~Y~~~ga~de~t~~~N~~af~~~~l~PRvLr~v~~~d~~ttllG~~~~~P~~iaP~g~~~l~hp 80 (361)
T cd04736 1 EDYRSLAKKRLPRMVFDYLEGGAEDEKGLRHNRDAFDRWRFIPRRLVDVSKRDISASLFGKVWSAPLVIAPTGLNGAFWP 80 (361)
T ss_pred ChHHHHHHHhCCHHHHHHHccCcchHHHHHHHHHHHHHcCccccccCCCCCCCCceeECCccccccccccHHHHHhccCC
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHhcCCceeecCCCCCcHHHHHhhcCCceeEEEeeecCHHHHHHHHHHHHHcCCcEEEEeecCCCCCCchh
Q 024846 119 EGEVATARAAASCNTIMVLSFTSSSSIEEVAASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLGRREA 198 (261)
Q Consensus 119 ~gE~alArAA~~~Gi~~~lSs~ss~sleeIa~~~~~~~wfQLy~~~dr~~~~~li~rAe~aG~~AlvvTVD~p~~G~Rer 198 (261)
+||+++||||+++|++|++||.|++|+|||+++.+++.|||||++ |++.++++|+||+++||+|||||||+|+.|+|++
T Consensus 81 ~gE~a~AraA~~~g~~~~lSt~ss~siEeva~a~~~~~wfQLY~~-~r~~~~~ll~RA~~aG~~alvlTvD~pv~g~R~~ 159 (361)
T cd04736 81 NGDLALARAAAKAGIPFVLSTASNMSIEDVARQADGDLWFQLYVV-HRELAELLVKRALAAGYTTLVLTTDVAVNGYRER 159 (361)
T ss_pred cHHHHHHHHHHHcCCcEEeeCCCCCCHHHHHhhcCCCeEEEEEec-CHHHHHHHHHHHHHcCCCEEEEecCCCCCCCchh
Confidence 999999999999999999999999999999988778899999997 5999999999999999999999999999999999
Q ss_pred HhhcCCCCC
Q 024846 199 DIKNKMITP 207 (261)
Q Consensus 199 d~r~~f~~P 207 (261)
|+||+|.+|
T Consensus 160 d~r~~~~~p 168 (361)
T cd04736 160 DLRNGFAIP 168 (361)
T ss_pred hhhcCCCCC
Confidence 999999877
No 7
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=100.00 E-value=1.2e-54 Score=413.27 Aligned_cols=170 Identities=41% Similarity=0.617 Sum_probs=167.2
Q ss_pred CCCHHHHHHHHHhhCChhhhhhhcCCccchhcHHHHHHHhhccccccccccCCCCCCcceeeCCcccCcceeeccccccc
Q 024846 35 PVNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHK 114 (261)
Q Consensus 35 ~~~l~D~e~~Ar~~Lp~~~~~Y~~gGa~de~T~~~N~~Af~ri~L~pRvL~dv~~~DtsttllG~~ls~Pi~iAP~g~~~ 114 (261)
++|++|||+.||++||+.+|+|+.||++||.|+++|++||++|+|+||+|+||+++||+|+|||+++++||+|||+|+++
T Consensus 18 ~~~i~D~~~~Ar~~lp~~~~~y~~gGa~de~t~~~N~~af~~~~l~PRvL~dv~~~dt~t~llG~~~~~P~~iAP~g~~~ 97 (383)
T cd03332 18 PVDPERLEALAREALSPGAFAYVAGGAGSESTARANRDAFSRWRIVPRMLRGVTERDLSVELFGRTLAAPLLLAPIGVQE 97 (383)
T ss_pred cCCHHHHHHHHHHhCCHHHHHHhccCcchHHHHHHHHHHHHhcCccccccccCCCCCCceeeCCccccccceechHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCchhhHHHHHHHHhcCCceeecCCCCCcHHHHHhhcC-CceeEEEeeecCHHHHHHHHHHHHHcCCcEEEEeecCCCC
Q 024846 115 LANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAASCN-AVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRL 193 (261)
Q Consensus 115 l~hp~gE~alArAA~~~Gi~~~lSs~ss~sleeIa~~~~-~~~wfQLy~~~dr~~~~~li~rAe~aG~~AlvvTVD~p~~ 193 (261)
++||+||+++||||+++|++|++||.+++|+|||+++.+ ++.|||||+++|++.++++|+||+++||+||+||||+|+.
T Consensus 98 l~~p~gE~a~ArAA~~~gi~~~lSt~ss~slEeIa~~~~~~~~wfQlY~~~dr~~~~~ll~RA~~aG~~alvlTVD~pv~ 177 (383)
T cd03332 98 LFHPDAELATARAAAELGVPYILSTASSSSIEDVAAAAGDAPRWFQLYWPKDDDLTESLLRRAEKAGYRVLVVTLDTWSL 177 (383)
T ss_pred hcCCcHHHHHHHHHHHcCCCeeecCCCCCCHHHHHhhcCCCCcEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCC
Confidence 999999999999999999999999999999999998854 7899999999999999999999999999999999999999
Q ss_pred CCchhHhhcCC
Q 024846 194 GRREADIKNKM 204 (261)
Q Consensus 194 G~Rerd~r~~f 204 (261)
|+|++|+||+|
T Consensus 178 g~Rerd~r~~~ 188 (383)
T cd03332 178 GWRPRDLDLGY 188 (383)
T ss_pred CCchhhhhcCC
Confidence 99999999998
No 8
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=100.00 E-value=4.5e-54 Score=405.71 Aligned_cols=174 Identities=41% Similarity=0.638 Sum_probs=170.3
Q ss_pred CCCCHHHHHHHHHhhCChhhhhhhcCCccchhcHHHHHHHhhccccccccccCCCCCCcceeeCCcccCcceeecccccc
Q 024846 34 EPVNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALH 113 (261)
Q Consensus 34 ~~~~l~D~e~~Ar~~Lp~~~~~Y~~gGa~de~T~~~N~~Af~ri~L~pRvL~dv~~~DtsttllG~~ls~Pi~iAP~g~~ 113 (261)
++++++|||+.||++||+.+|+|++||++||+|+++|++||++|+|+||+|+||+++||+|++||+++++||+|||+|++
T Consensus 4 ~~~~i~d~~~~A~~~lp~~~~~y~~~ga~~e~t~~~N~~a~~~~~l~prvL~dv~~~d~~t~~lG~~~~~P~~iaP~g~~ 83 (351)
T cd04737 4 DIINLYDLEAEAKKVIPKGAFGYIAGGSEDEWTLRENTRAFNHKQIVPRVLQGVESPDTSTELLGIKLKTPIIMAPIAAH 83 (351)
T ss_pred ccCcHHHHHHHHHHhCCHHHHHHHhcCcchHHHHHHHHHHHHhcCeechhccCCCCCCCceEeCCccccchhhhHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCchhhHHHHHHHHhcCCceeecCCCCCcHHHHHhhc-CCceeEEEeeecCHHHHHHHHHHHHHcCCcEEEEeecCCC
Q 024846 114 KLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAASC-NAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPR 192 (261)
Q Consensus 114 ~l~hp~gE~alArAA~~~Gi~~~lSs~ss~sleeIa~~~-~~~~wfQLy~~~dr~~~~~li~rAe~aG~~AlvvTVD~p~ 192 (261)
+++||+||+++||||+++|++|++|+.+++++|||+++. +++.|||||+++|++.++++|+||+++||++|+||||+|+
T Consensus 84 ~l~~p~ge~a~AraA~~~gi~~~lSt~s~~s~Eei~~~~~~~~~wfQlY~~~d~~~~~~ll~rA~~aG~~alvlTvD~p~ 163 (351)
T cd04737 84 GLAHATGEVATARGMAEVGSLFSISTYSNTSLEEIAKASNGGPKWFQLYMSKDDGFNRSLLDRAKAAGAKAIILTADATV 163 (351)
T ss_pred HhcCCchHHHHHHHHHHcCCCEEecCCCCCCHHHHHHhcCCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCC
Confidence 999999999999999999999999999999999999987 5789999999999999999999999999999999999999
Q ss_pred CCCchhHhhcCCCCC
Q 024846 193 LGRREADIKNKMITP 207 (261)
Q Consensus 193 ~G~Rerd~r~~f~~P 207 (261)
.|+|++|+||+|.+|
T Consensus 164 ~g~R~~d~r~~~~~p 178 (351)
T cd04737 164 GGNREADIRNKFQFP 178 (351)
T ss_pred CCcchHHHHhcCCCC
Confidence 999999999999887
No 9
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=100.00 E-value=1.8e-51 Score=387.23 Aligned_cols=199 Identities=41% Similarity=0.572 Sum_probs=181.3
Q ss_pred HHHHHHHHhhCChhhhhhhcCCccchhcHHHHHHHhhccccccccccCCCCCCcceeeCCcccCcceeeccccccccCCc
Q 024846 39 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANP 118 (261)
Q Consensus 39 ~D~e~~Ar~~Lp~~~~~Y~~gGa~de~T~~~N~~Af~ri~L~pRvL~dv~~~DtsttllG~~ls~Pi~iAP~g~~~l~hp 118 (261)
+|||+.||++||+.+|+|+.||+++|+|+++|++||++|+|+||+|+|++++||+|+|||+++++||+|||||+++++||
T Consensus 1 ~d~~~~A~~~lp~~~~~y~~~ga~~e~t~~~N~~af~~~~l~pr~L~dv~~~d~~~~~lG~~~~~Pi~iaP~~~~~~~~~ 80 (344)
T cd02922 1 HDFEAAAKKYLSKKAWAYYSSGADDEITLRENLEAFQRIRFRPRVLRDVEKVDTSTTILGHKVSLPFFISPAALAKLAHP 80 (344)
T ss_pred ChHHHHHHHhCCHHHHHHhccCcchHHHHHHHHHHHHhCceeccccCCCCCCCCceEECCcccCCceeeChHHHhhhCCc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHhcCCceeecCCCCCcHHHHHhh-cC-CceeEEEeeecCHHHHHHHHHHHHHcCCcEEEEeecCCCCCCc
Q 024846 119 EGEVATARAAASCNTIMVLSFTSSSSIEEVAAS-CN-AVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLGRR 196 (261)
Q Consensus 119 ~gE~alArAA~~~Gi~~~lSs~ss~sleeIa~~-~~-~~~wfQLy~~~dr~~~~~li~rAe~aG~~AlvvTVD~p~~G~R 196 (261)
+||+++||||+++|++|++||++++++|||++. .| ++.|||||+++|++.++++++||+++||+||+||||+|+.|+|
T Consensus 81 ~ge~~~AraA~~~gi~~~lss~s~~s~e~v~~~~~~~~~~w~Qly~~~d~~~~~~l~~ra~~ag~~alvltvD~p~~g~r 160 (344)
T cd02922 81 DGELNLARAAGKHGILQMISTNASCSLEEIVDARPPDQPLFFQLYVNKDRTKTEELLKRAEKLGAKAIFLTVDAPVLGKR 160 (344)
T ss_pred hHHHHHHHHHHHcCCCEEecCcccCCHHHHHHhcCCCCcEEEEEeecCCHHHHHHHHHHHHHcCCCEEEEECCCCCcCcc
Confidence 999999999999999999999999999999887 34 6899999999999999999999999999999999999999999
Q ss_pred hhHhhcCCCCC---Cccc-------------cc-------------cccc-cccccccccccCcccch-hhh
Q 024846 197 EADIKNKMITP---PLKN-------------LE-------------GLLS-TKVSSVRILKLMPRDHG-CFF 237 (261)
Q Consensus 197 erd~r~~f~~P---~~~~-------------l~-------------~~~~-~~~~~~~k~~m~~~d~~-~~~ 237 (261)
++|+||+|..| +..+ +. .+.. .++|.+.|++++++|+. |.+
T Consensus 161 ~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~PvivKgv~~~~dA~~a~~ 232 (344)
T cd02922 161 ERDERLKAEEAVSDGPAGKKTKAKGGGAGRAMSGFIDPTLTWDDIKWLRKHTKLPIVLKGVQTVEDAVLAAE 232 (344)
T ss_pred hhhhhhcCCcCccccccccccccccchHHHHHhhccCCCCCHHHHHHHHHhcCCcEEEEcCCCHHHHHHHHH
Confidence 99999999877 2222 00 0000 14567889999999988 654
No 10
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=100.00 E-value=8.7e-49 Score=370.49 Aligned_cols=163 Identities=48% Similarity=0.692 Sum_probs=155.8
Q ss_pred HHhhCChhhhhhhcCCccchhcHHHHHHHhhccccccccccCCCCCCcceeeCCcccCcceeeccccccccCCchhhHHH
Q 024846 45 ARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVAT 124 (261)
Q Consensus 45 Ar~~Lp~~~~~Y~~gGa~de~T~~~N~~Af~ri~L~pRvL~dv~~~DtsttllG~~ls~Pi~iAP~g~~~l~hp~gE~al 124 (261)
||++||+.+|+|+.||+++|.|+++|+++|++|+|+||+|++++++||+|+|||+++++||+|||+|++++.||+||.++
T Consensus 1 Ar~~lp~~~~~yi~gga~~e~t~~~N~~af~~i~l~prvL~dv~~~D~st~~lG~~~s~P~~iaP~~~~~l~~~~ge~~l 80 (356)
T PF01070_consen 1 ARRRLPPRVFDYIDGGAGDEVTFRRNREAFDRIRLRPRVLRDVSDPDTSTTFLGQKLSMPFFIAPMGGGGLAHPDGERAL 80 (356)
T ss_dssp HHHHS-HHHHHHHHHHSTTTHHHHHHHHGGGGEEE---SSSBGSS-BSSEEETTEEESSSEEEEEESTGGGTSTTHHHHH
T ss_pred CccccCHHHHHHHHHcCCCcHHHHHHHHHHHHhcccccccCCcccCCCCeeeCCccCCCCeEEcchhhhhhhccchHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCceeecCCCCCcHHHHHhhcCCceeEEEeeecCHHHHHHHHHHHHHcCCcEEEEeecCCCCCCchhHhhcCC
Q 024846 125 ARAAASCNTIMVLSFTSSSSIEEVAASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLGRREADIKNKM 204 (261)
Q Consensus 125 ArAA~~~Gi~~~lSs~ss~sleeIa~~~~~~~wfQLy~~~dr~~~~~li~rAe~aG~~AlvvTVD~p~~G~Rerd~r~~f 204 (261)
||||+++|+++++|++++.++|+|+++.+++.|||||+++|++.+.++|+|||++||+||+||||+|+.|+|++|.|++|
T Consensus 81 AraA~~~Gi~~~lss~s~~~~e~ia~~~~~~~~~Qly~~~d~~~~~~~i~rAe~aG~~Al~vtvD~~~~~~R~~d~r~g~ 160 (356)
T PF01070_consen 81 ARAAAKAGIPMMLSSQSSASLEEIAAASGGPLWFQLYPPRDRELTRDLIRRAEAAGAKALVVTVDAPQEGNRERDLRNGF 160 (356)
T ss_dssp HHHHHHHTSEEEEETTCSSCHHHHHHHCTSEEEEEEEGBSSHHHHHHHHHHHHHTTCSEEEEETSHSSHHHBHHHHHHTC
T ss_pred HHHHhccCcceeccCCccCCHHHHHhhccCCeEEEEEEecCHHHHHHHHHHhhcCCCCEEEEECcCcccCCccccccccc
Confidence 99999999999999999999999999888889999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q 024846 205 ITP 207 (261)
Q Consensus 205 ~~P 207 (261)
.+|
T Consensus 161 ~~p 163 (356)
T PF01070_consen 161 SVP 163 (356)
T ss_dssp CCS
T ss_pred CCC
Confidence 887
No 11
>PLN02979 glycolate oxidase
Probab=100.00 E-value=1.3e-42 Score=328.00 Aligned_cols=132 Identities=60% Similarity=0.962 Sum_probs=129.1
Q ss_pred ccccccccccCCCCCCcceeeCCcccCcceeeccccccccCCchhhHHHHHHHHhcCCceeecCCCCCcHHHHHhhcCCc
Q 024846 76 RITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAASCNAV 155 (261)
Q Consensus 76 ri~L~pRvL~dv~~~DtsttllG~~ls~Pi~iAP~g~~~l~hp~gE~alArAA~~~Gi~~~lSs~ss~sleeIa~~~~~~ 155 (261)
-|+|+||+|+||+++||+|++||+++++||+|||+|+++++||+||.++||||+++|++|++|+.+++|+|||+++.+++
T Consensus 43 ~~~lrPRvLrdv~~~dtst~llG~~~~~P~~iAP~g~~~l~hpdgE~a~ARAA~~agi~~~lSt~ss~slEeIa~a~~~~ 122 (366)
T PLN02979 43 FCDFRPRILIDVSKIDMTTTVLGFKISMPIMVAPTAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGI 122 (366)
T ss_pred eeEEECccccCCCCCCCceEECCcccCccceecHHHHHhhCCCChHHHHHHHHHHcCCCeeeccCcCCCHHHHHhccCCC
Confidence 48899999999999999999999999999999999999999999999999999999999999999999999999887788
Q ss_pred eeEEEeeecCHHHHHHHHHHHHHcCCcEEEEeecCCCCCCchhHhhcCCCCC
Q 024846 156 RFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITP 207 (261)
Q Consensus 156 ~wfQLy~~~dr~~~~~li~rAe~aG~~AlvvTVD~p~~G~Rerd~r~~f~~P 207 (261)
.|||||+++|++.++++|+||+++||+||+||||+|+.|+|++|+||+|.+|
T Consensus 123 ~wfQLY~~~Dr~~~~~ll~RA~~aG~~AlvlTVD~pv~G~R~rd~rn~~~~p 174 (366)
T PLN02979 123 RFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLP 174 (366)
T ss_pred eEEEEeecCCHHHHHHHHHHHHHcCCCEEEEEecCCCCCCchhhhccCCCCC
Confidence 9999999999999999999999999999999999999999999999999888
No 12
>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]
Probab=100.00 E-value=2.8e-35 Score=278.70 Aligned_cols=164 Identities=49% Similarity=0.688 Sum_probs=159.2
Q ss_pred HHHHHHHHhhCChhhhhhhcCCccchhcHHHHHHHhhccccccccccCCCCCCcceeeCCcccCcceeeccccccccCCc
Q 024846 39 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANP 118 (261)
Q Consensus 39 ~D~e~~Ar~~Lp~~~~~Y~~gGa~de~T~~~N~~Af~ri~L~pRvL~dv~~~DtsttllG~~ls~Pi~iAP~g~~~l~hp 118 (261)
.|++..|++++| ..|+|+.||+++|.|+++|+++|++|.|+||+|++++++|++|++||+++++||+||||++++|.|+
T Consensus 2 ~~~~~~a~~~~~-~~~hy~~~~~~~e~t~~~n~~~f~~i~l~~~~L~~v~~idlst~~~G~~l~~Pi~iapmt~g~~~~~ 80 (360)
T COG1304 2 ADLRRAAQRRLP-KAFHYIDGGAEDEVTLRRNREAFEDIALRPRVLPEVDDIDLSTTFLGQKLSAPIIIAPMTGGGLAHP 80 (360)
T ss_pred cchHHHHhhhcc-hHhHHHHhhccccccHhhhhhhhhhheeecccCCCcccCccceEecCccccCCEEEeccccccccCh
Confidence 589999999999 8899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHhcCCceeecCCCCCcHHHHHhhcCCceeEEEeeecCHHHHHHHHHHHHHcCCcEEEEeecCCCCCCchh
Q 024846 119 EGEVATARAAASCNTIMVLSFTSSSSIEEVAASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLGRREA 198 (261)
Q Consensus 119 ~gE~alArAA~~~Gi~~~lSs~ss~sleeIa~~~~~~~wfQLy~~~dr~~~~~li~rAe~aG~~AlvvTVD~p~~G~Rer 198 (261)
+||...+++|+++|+++++|+.+++++|++.+..+ ||+|+.+||+...++++||+++||+++++|||.|+.|+|++
T Consensus 81 ~ge~~~a~~A~~a~~~~i~s~~gs~~ie~~~~~~~----~q~y~~~~R~~~~~~~~~a~n~G~~~lv~t~d~~~~~~r~~ 156 (360)
T COG1304 81 EGEVINAKLAAAAGEPFILSTVGSQRIEEVAAAPP----FQLYFSKDREFAPNLVDRAANAGAKQLVLTVDSPVGGERER 156 (360)
T ss_pred hhHHHHHHHHHHcCCCeeeeccccCcHHHhhcCcc----hhhhhHHHHHhhHHHHHHHHhcCCcceeeccCccchHHHHH
Confidence 99999999999999999999999999999987654 89999999999999999999999999999999999999999
Q ss_pred HhhcCCCCC
Q 024846 199 DIKNKMITP 207 (261)
Q Consensus 199 d~r~~f~~P 207 (261)
|.++++..|
T Consensus 157 d~~~~i~a~ 165 (360)
T COG1304 157 DAVNGISAP 165 (360)
T ss_pred HHHhccCCC
Confidence 999998777
No 13
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=100.00 E-value=1.8e-33 Score=259.54 Aligned_cols=189 Identities=48% Similarity=0.675 Sum_probs=170.0
Q ss_pred HHHHHHHHhhCChhhhhhhcCCccchhcHHHHHHHhhccccccccccCCCCCCcceeeCCcccCcceeeccccccccCCc
Q 024846 39 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANP 118 (261)
Q Consensus 39 ~D~e~~Ar~~Lp~~~~~Y~~gGa~de~T~~~N~~Af~ri~L~pRvL~dv~~~DtsttllG~~ls~Pi~iAP~g~~~l~hp 118 (261)
.|||..|+++||+..|.|+.+|++++.|+++|+.+|++|+|+||+|++++++||+++|||++++.||++|||++.++.|+
T Consensus 1 ~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~l~~~~~id~~~~~lg~~~~~Pi~iapm~g~~~~~~ 80 (299)
T cd02809 1 ADLRALARRRLPKAVFDYIDGGAGDEVTLRRNRAAFDRIRLRPRVLRDVSKRDTSTTLLGQKLAMPFGIAPTGLQGLAHP 80 (299)
T ss_pred ChHHHHHHHhCCHHHhhhhccccchHHHHHHHHHHHHhceeecccCCCCCCCCCceEECCeecCCCeeeCcccccccCCc
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999888899
Q ss_pred hhhHHHHHHHHhcCCceeecCCCCCcHHHHHhhcCCceeEEEeeecCHHHHHHHHHHHHHcCCcEEEEeecCCCCCCchh
Q 024846 119 EGEVATARAAASCNTIMVLSFTSSSSIEEVAASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLGRREA 198 (261)
Q Consensus 119 ~gE~alArAA~~~Gi~~~lSs~ss~sleeIa~~~~~~~wfQLy~~~dr~~~~~li~rAe~aG~~AlvvTVD~p~~G~Rer 198 (261)
+++..+|++|+++|+++++|++++.++|++.+..+++.|+|||...|.+.+.++++++++.|+++|.+++|+|..|.|
T Consensus 81 ~~~~~la~aa~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~ql~~~~~~~~~~~~i~~~~~~g~~~i~l~~~~p~~~~~-- 158 (299)
T cd02809 81 DGELATARAAAAAGIPFTLSTVSTTSLEEVAAAAPGPRWFQLYVPRDREITEDLLRRAEAAGYKALVLTVDTPVLGRR-- 158 (299)
T ss_pred hHHHHHHHHHHHcCCCEEecCCCcCCHHHHHHhcCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCC--
Confidence 999999999999999999999999999999988778899999998899999999999999999999999999998777
Q ss_pred HhhcCCCCCCcccccccccc-ccccccccccCcccch-hhh
Q 024846 199 DIKNKMITPPLKNLEGLLST-KVSSVRILKLMPRDHG-CFF 237 (261)
Q Consensus 199 d~r~~f~~P~~~~l~~~~~~-~~~~~~k~~m~~~d~~-~~~ 237 (261)
+ ....++.+... +++.+.|+++|++++. |.+
T Consensus 159 -----~---~~~~i~~l~~~~~~pvivK~v~s~~~a~~a~~ 191 (299)
T cd02809 159 -----L---TWDDLAWLRSQWKGPLILKGILTPEDALRAVD 191 (299)
T ss_pred -----C---CHHHHHHHHHhcCCCEEEeecCCHHHHHHHHH
Confidence 1 12233334333 4677778888888877 443
No 14
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=99.25 E-value=1e-11 Score=116.54 Aligned_cols=119 Identities=21% Similarity=0.148 Sum_probs=83.7
Q ss_pred HHHHhhcccccccccc--CCCCCCcceeeCCcccCcceeeccccccccCCchhhHHHHHHHHhcCCceeecCCCC-----
Q 024846 70 NVEAFHRITFRPRILV--DVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSS----- 142 (261)
Q Consensus 70 N~~Af~ri~L~pRvL~--dv~~~DtsttllG~~ls~Pi~iAP~g~~~l~hp~gE~alArAA~~~Gi~~~lSs~ss----- 142 (261)
+...|++|+|+|+.|+ +++++||+|+|||+++++||+++||++....-.+....+|++|.++|++|++||++.
T Consensus 18 ~~~~~d~i~l~~~~l~~~~~~~id~s~~~~G~~l~~Pi~ia~mtGg~~~~~~in~~La~~a~~~g~~~~~Gs~~~~~~~~ 97 (326)
T cd02811 18 GSTGFDDVRLVHNALPELDLDDIDLSTEFLGKRLSAPLLISAMTGGSEKAKEINRNLAEAAEELGIAMGVGSQRAALEDP 97 (326)
T ss_pred CCCChhhEEEecccCCCCCcccCCCeeEECCceecCCEEEeCCCCCChHHHHHHHHHHHHHHHcCCCeEecCchhhccCh
Confidence 5667999999999999 889999999999999999999999865321112235899999999999999999853
Q ss_pred ---CcHHHHHhhcC-CceeEEEee----ecCHHHHHHHHHHHHHcCCcEEEEeecCC
Q 024846 143 ---SSIEEVAASCN-AVRFYQLYV----FKKRDIAATLVQRAERNGFKALVLTADTP 191 (261)
Q Consensus 143 ---~sleeIa~~~~-~~~wfQLy~----~~dr~~~~~li~rAe~aG~~AlvvTVD~p 191 (261)
.+++.+.+..+ .+.+.-+-. +.+.+.. .+..+.+++.|+-++++.+
T Consensus 98 e~~~~~~~vr~~~~~~p~~~Nl~~~~~~~~~~~~~---~~~i~~~~adalel~l~~~ 151 (326)
T cd02811 98 ELAESFTVVREAPPNGPLIANLGAVQLNGYGVEEA---RRAVEMIEADALAIHLNPL 151 (326)
T ss_pred hhhhHHHHHHHhCCCceEEeecCccccCCCCHHHH---HHHHHhcCCCcEEEeCcch
Confidence 23344555444 221111111 2233333 3334556889999998753
No 15
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=99.20 E-value=2.9e-11 Score=114.78 Aligned_cols=120 Identities=22% Similarity=0.185 Sum_probs=83.1
Q ss_pred HHHhhcccccccccc--CCCCCCcceeeCCcccCcceeeccccccccCCchhhHHHHHHHHhcCCceeecCCCC------
Q 024846 71 VEAFHRITFRPRILV--DVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSS------ 142 (261)
Q Consensus 71 ~~Af~ri~L~pRvL~--dv~~~DtsttllG~~ls~Pi~iAP~g~~~l~hp~gE~alArAA~~~Gi~~~lSs~ss------ 142 (261)
...|++|+|+|+.|+ +++++||+|+|||+++++||+|+||++..---.+.+.++|++|.++|+++++|+++.
T Consensus 27 ~~~~d~v~l~~~~lp~~~~~~vd~s~~~~g~~l~~Pi~i~~MtGgs~~~~~in~~La~~a~~~G~~~~~Gs~~~~~~~~~ 106 (352)
T PRK05437 27 TTGFDDVRLIHNALPELDLDDIDLSTEFLGKKLSAPFLINAMTGGSEKAKEINRKLAEAAEELGIAMGVGSQRAALKDPE 106 (352)
T ss_pred CCChheEEEecccCCCCChhhccceeeECCceecCCEEecccCCCChhHHHHHHHHHHHHHHcCCCeEecccHhhccChh
Confidence 345999999999999 788999999999999999999999865421112346899999999999999999862
Q ss_pred --CcHHHHHhhcC-CceeEEEeeecCHHH-HHHHHHHHHHcCCcEEEEeecC
Q 024846 143 --SSIEEVAASCN-AVRFYQLYVFKKRDI-AATLVQRAERNGFKALVLTADT 190 (261)
Q Consensus 143 --~sleeIa~~~~-~~~wfQLy~~~dr~~-~~~li~rAe~aG~~AlvvTVD~ 190 (261)
.+++.+.+..| ++.+.-|..+...+. .++..+.++..++.|+-+++..
T Consensus 107 ~~~~~~~vr~~~p~~p~~aNl~~~~~~~~~~~~~~~~~~~~~adal~l~l~~ 158 (352)
T PRK05437 107 LADSFSVVRKVAPDGLLFANLGAVQLYGYGVEEAQRAVEMIEADALQIHLNP 158 (352)
T ss_pred hHHHHHHHHHHCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCcc
Confidence 23344455444 322221221111111 2234444566788999999865
No 16
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=99.07 E-value=3e-10 Score=106.94 Aligned_cols=119 Identities=18% Similarity=0.126 Sum_probs=80.2
Q ss_pred Hhhcccccccccc--CCCCCCcceeeCCcccCcceeeccccccccCCchhhHHHHHHHHhcCCceeecCCCC--------
Q 024846 73 AFHRITFRPRILV--DVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSS-------- 142 (261)
Q Consensus 73 Af~ri~L~pRvL~--dv~~~DtsttllG~~ls~Pi~iAP~g~~~l~hp~gE~alArAA~~~Gi~~~lSs~ss-------- 142 (261)
.|++|+|.|..|+ +++++||||+|||+++++||+++||++...--..-...+|++|+++|+++++||++.
T Consensus 22 ~~~~~~~~~~~lp~~~~~~~d~s~~~~g~~l~~Pi~iaaMtGg~~~~~~in~~La~~a~~~g~~~~~Gs~~~~~~~~~~~ 101 (333)
T TIGR02151 22 GFDDITLIHNALPEINLDDIDLTTEFLGKRLKAPFYINAMTGGSEEAGKINRNLARAARELGIPMGVGSQRAALKDPETA 101 (333)
T ss_pred CcceEEEecCCCCCCCcccCCCceEECCccccCCEEEeCCCCCchhHHHHHHHHHHHHHHcCCCeEEcCchhhccChhhH
Confidence 3999999999999 578899999999999999999999865421111225899999999999999999762
Q ss_pred CcHHHHHhhcCC-ceeEEEeeecCHH-HHHHHHHHHHHcCCcEEEEeecCC
Q 024846 143 SSIEEVAASCNA-VRFYQLYVFKKRD-IAATLVQRAERNGFKALVLTADTP 191 (261)
Q Consensus 143 ~sleeIa~~~~~-~~wfQLy~~~dr~-~~~~li~rAe~aG~~AlvvTVD~p 191 (261)
.+.+.+.+..+. +..--+-.+...+ ..++..+.++..++.|+-++++.+
T Consensus 102 ~~~~~vr~~~~~~p~i~nl~~~~~~~~~~~~~~~~i~~i~adal~i~ln~~ 152 (333)
T TIGR02151 102 DTFEVVREEAPNGPLIANIGAPQLVEGGPEEAQEAIDMIEADALAIHLNVL 152 (333)
T ss_pred hHHHHHHHhCCCCcEEeecCchhhccccHHHHHHHHHHhcCCCEEEcCccc
Confidence 123334443442 2111111111101 133344445666788999998754
No 17
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=98.05 E-value=7.8e-06 Score=77.38 Aligned_cols=67 Identities=16% Similarity=0.091 Sum_probs=56.8
Q ss_pred hhccccccccccC--CCCCCcceeeCCcccCcceeeccccccccCCchhhHHHHHHHHhcCCceeecCCCCCcHHHHH
Q 024846 74 FHRITFRPRILVD--VSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVA 149 (261)
Q Consensus 74 f~ri~L~pRvL~d--v~~~DtsttllG~~ls~Pi~iAP~g~~~l~hp~gE~alArAA~~~Gi~~~lSs~ss~sleeIa 149 (261)
|++++|+|..|+. ++++|++|+|+|.++++||+|++|- -..+..+|+.|++.|...++-- ..+|+..
T Consensus 7 Fddv~lv~~~lp~~s~~dvdlst~~~~~~l~~P~~inAM~------t~iN~~LA~~a~~~G~~~~~~k---~~~e~~~ 75 (326)
T PRK05458 7 YEDIQLIPNKCIVNSRSECDTSVTLGPRTFKLPVVPANMQ------TIIDEKIAEWLAENGYFYIMHR---FDPEARI 75 (326)
T ss_pred ccceEEecCCCCCCCHHHcccceEECCcEecCcEEEeccc------chhHHHHHHHHHHcCCEEEEec---CCHHHHH
Confidence 9999999999995 4689999999999999999999982 2579999999999988888754 2566644
No 18
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=97.94 E-value=3.1e-05 Score=73.21 Aligned_cols=109 Identities=16% Similarity=0.132 Sum_probs=74.0
Q ss_pred HhhccccccccccCC--CCCCcceeeCCcccCcceeeccccccccCCchhhHHHHHHHHhcCCceeecCCCCCcHHHHHh
Q 024846 73 AFHRITFRPRILVDV--SRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAA 150 (261)
Q Consensus 73 Af~ri~L~pRvL~dv--~~~DtsttllG~~ls~Pi~iAP~g~~~l~hp~gE~alArAA~~~Gi~~~lSs~ss~sleeIa~ 150 (261)
.|++++|+|..++.. +++|++|+|+|.++++||++++|- -..+..+|++|++.|...++--. ++|+..+
T Consensus 3 ~FddV~lvp~~lp~~s~~dVdlst~~~~~~l~~P~~inAM~------t~in~~LA~~a~~~G~~~i~hK~---~~E~~~s 73 (321)
T TIGR01306 3 DYEDIQLIPNKCIVNSRSECDTSVTLGKHKFKLPVVPANMQ------TIIDEKLAEQLAENGYFYIMHRF---DEESRIP 73 (321)
T ss_pred CcccEEEecCCCCCCCHHHceeeEEECCcEecCcEEeeccc------hhhhHHHHHHHHHcCCEEEEecC---CHHHHHH
Confidence 489999999999964 689999999999999999999982 25799999999999999888652 5665432
Q ss_pred hcC--CceeEEEeeecC---HHHHHHHHHHHHHcCCcEEEEeecCCC
Q 024846 151 SCN--AVRFYQLYVFKK---RDIAATLVQRAERNGFKALVLTADTPR 192 (261)
Q Consensus 151 ~~~--~~~wfQLy~~~d---r~~~~~li~rAe~aG~~AlvvTVD~p~ 192 (261)
..+ ... |++..-. .+.-.+.+..-.++|..+=+|.+|++.
T Consensus 74 fvrk~k~~--~L~v~~SvG~t~e~~~r~~~lv~a~~~~d~i~~D~ah 118 (321)
T TIGR01306 74 FIKDMQER--GLFASISVGVKACEYEFVTQLAEEALTPEYITIDIAH 118 (321)
T ss_pred HHHhcccc--ccEEEEEcCCCHHHHHHHHHHHhcCCCCCEEEEeCcc
Confidence 221 000 1222111 112234455556678544555566543
No 19
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=97.09 E-value=0.0024 Score=60.32 Aligned_cols=106 Identities=23% Similarity=0.227 Sum_probs=72.6
Q ss_pred Hhhcccccccccc-CCCCCCcceeeCC-cccCcceeeccccccccCCchhhHHHHHHHHhcCCceeecCCCCCcHHHHHh
Q 024846 73 AFHRITFRPRILV-DVSRIDLSTTILD-YKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAA 150 (261)
Q Consensus 73 Af~ri~L~pRvL~-dv~~~DtsttllG-~~ls~Pi~iAP~g~~~l~hp~gE~alArAA~~~Gi~~~lSs~ss~sleeIa~ 150 (261)
.|+++.|+|.... +.+++|+++.|.+ ..+..||+.|||.+. .+..+|.+.+++|-..++... .++++..+
T Consensus 3 ~~ddv~l~p~~~~~~~~~vdl~t~l~~~~~l~~Piv~apM~~v------t~~~ma~ava~~GglGvi~~~--~~~~~~~~ 74 (325)
T cd00381 3 TFDDVLLVPGYSTVLPSEVDLSTKLTKNITLNIPLVSAPMDTV------TESEMAIAMARLGGIGVIHRN--MSIEEQAE 74 (325)
T ss_pred CcccEEEeCCCCCCCHHHceeeEEecCccccCCCEEecCCCcC------CcHHHHHHHHHCCCEEEEeCC--CCHHHHHH
Confidence 3889999998643 5677899999998 889999999998654 366778888888887777542 34555543
Q ss_pred hc----CCceeEEEeeecCHHHHHHHHHHHHHcCCcEEEEee
Q 024846 151 SC----NAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTA 188 (261)
Q Consensus 151 ~~----~~~~wfQLy~~~dr~~~~~li~rAe~aG~~AlvvTV 188 (261)
.. +.....+.... +....+.++...++|++.|+|+.
T Consensus 75 ~i~~vk~~l~v~~~~~~--~~~~~~~~~~l~eagv~~I~vd~ 114 (325)
T cd00381 75 EVRKVKGRLLVGAAVGT--REDDKERAEALVEAGVDVIVIDS 114 (325)
T ss_pred HHHHhccCceEEEecCC--ChhHHHHHHHHHhcCCCEEEEEC
Confidence 22 22222333222 23345677777788999888765
No 20
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=96.86 E-value=0.0039 Score=60.07 Aligned_cols=59 Identities=22% Similarity=0.237 Sum_probs=49.6
Q ss_pred HhhccccccccccC--CCCCCcceeeCCcccCcceeeccccccccCCchhhHHHHHHHHhcCCceeec
Q 024846 73 AFHRITFRPRILVD--VSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLS 138 (261)
Q Consensus 73 Af~ri~L~pRvL~d--v~~~DtsttllG~~ls~Pi~iAP~g~~~l~hp~gE~alArAA~~~Gi~~~lS 138 (261)
.|++|.|+|. ++. .+++|+++.+-+..+..||+++||.+. .+..++++..++|-..++.
T Consensus 17 ~fddV~lvp~-~~~~~~~dvdls~~~~~~~i~~Piv~a~M~gV------t~~~la~avs~~GglGvl~ 77 (368)
T PRK08649 17 GLDEIAIVPS-RRTRDPEDVSTSWQIDAYRFEIPIIASPMDAV------VSPETAIELGKLGGLGVLN 77 (368)
T ss_pred CcceEEEeCC-CCCCCHHHceeeeeecceeccCcEeccCCccc------CCHHHHHHHHhCCCceEEe
Confidence 4999999999 664 467899998989999999999998654 3678899999999877776
No 21
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=94.28 E-value=0.16 Score=49.15 Aligned_cols=61 Identities=18% Similarity=0.210 Sum_probs=48.7
Q ss_pred Hhhcccccccc-ccCCCCCCcceeeCCcccCcceeeccccccccCCchhhHHHHHHHHhcCCceeecC
Q 024846 73 AFHRITFRPRI-LVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSF 139 (261)
Q Consensus 73 Af~ri~L~pRv-L~dv~~~DtsttllG~~ls~Pi~iAP~g~~~l~hp~gE~alArAA~~~Gi~~~lSs 139 (261)
.|+.|.|+|.. =++-+++||+.++=+.++..||+.|||++.. +..++..+.++|-+-++|.
T Consensus 14 ~~d~i~~vp~~~t~~~~~v~~~~~i~~~~l~~PivlAPMagVt------d~~fr~~~~~~Galgvvsa 75 (369)
T TIGR01304 14 SLDDISVVPSRRTRSSKDVDTAWQIDAYRFELPFIAHPMDALV------SPEFAIELGELGGLGVLNL 75 (369)
T ss_pred CcceEEEcCCCCCCChhhccceeEEcceecCCceeecCCCccc------CHHHHHHHHHcCCcccccc
Confidence 59999999974 3466778888888778899999999997653 5678888888888766763
No 22
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=93.76 E-value=0.28 Score=47.08 Aligned_cols=111 Identities=16% Similarity=0.115 Sum_probs=68.1
Q ss_pred Hhhcccccccccc--CCCCCCcceeeCCc-----ccCcceeeccccccccCCchhhHHHHHHHHhcCCceeecCCCCCcH
Q 024846 73 AFHRITFRPRILV--DVSRIDLSTTILDY-----KISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSI 145 (261)
Q Consensus 73 Af~ri~L~pRvL~--dv~~~DtsttllG~-----~ls~Pi~iAP~g~~~l~hp~gE~alArAA~~~Gi~~~lSs~ss~sl 145 (261)
.|+++.|+|+--. .=+++|++++|--+ .+..||+-|.|--. +|..+|.+-++.|...++-- ..++
T Consensus 9 ~f~DVll~P~~s~v~sR~evdl~~~~~~~~~~~~~~~iPii~AnMdtv------~~~~mA~~la~~g~~~~iHk--~~~~ 80 (343)
T TIGR01305 9 DFKDVLLRPKRSTLKSRADVELERTFTFRNSKQTYSGVPIIAANMDTV------GTFEMAAALSQHSIFTAIHK--HYSV 80 (343)
T ss_pred CccceEEecCcCccCcHHHceeeEEEccccCCceeeCCceEecCCCcc------cCHHHHHHHHHCCCeEEEee--CCCH
Confidence 4899999998432 23678999998644 68999999886322 68899999999999999954 3456
Q ss_pred HHHHhh----cCCceeEEEee-ecCHHHHHHHHHHHHHcCCcEEEEeecCCC
Q 024846 146 EEVAAS----CNAVRFYQLYV-FKKRDIAATLVQRAERNGFKALVLTADTPR 192 (261)
Q Consensus 146 eeIa~~----~~~~~wfQLy~-~~dr~~~~~li~rAe~aG~~AlvvTVD~p~ 192 (261)
|+-++. .+.... ++.+ -.-.+...+.++...++|...=+|.||++.
T Consensus 81 e~~~~~v~~~~~~~~~-~~~vsvG~~~~d~er~~~L~~a~~~~d~iviD~Ah 131 (343)
T TIGR01305 81 DEWKAFATNSSPDCLQ-NVAVSSGSSDNDLEKMTSILEAVPQLKFICLDVAN 131 (343)
T ss_pred HHHHHHHHhhcccccc-eEEEEeccCHHHHHHHHHHHhcCCCCCEEEEECCC
Confidence 663322 221111 1222 122233345666666676333344455543
No 23
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=93.12 E-value=0.64 Score=45.58 Aligned_cols=69 Identities=22% Similarity=0.243 Sum_probs=50.9
Q ss_pred Hhhcccccccccc-CCCCCCcceeeC-CcccCcceeeccccccccCCchhhHHHHHHHHhcCCceeecCCCCCcHHHHH
Q 024846 73 AFHRITFRPRILV-DVSRIDLSTTIL-DYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVA 149 (261)
Q Consensus 73 Af~ri~L~pRvL~-dv~~~Dtsttll-G~~ls~Pi~iAP~g~~~l~hp~gE~alArAA~~~Gi~~~lSs~ss~sleeIa 149 (261)
-|+++.|+|..-. ..+++|+++.|. ...+..||+-|||... .+..+|.|.+++|-..+++. ..++|++.
T Consensus 11 tfdDvll~P~~s~~~~~~vdl~t~lt~~l~l~iPIvsApMd~V------t~~~lA~AvA~aGGlGvI~~--~~~~e~l~ 81 (404)
T PRK06843 11 TFDDVSLIPRKSSVLPSEVSLKTQLTKNISLNIPFLSSAMDTV------TESQMAIAIAKEGGIGIIHK--NMSIEAQR 81 (404)
T ss_pred CccceEEccCCCccCHHhccccchhhhccCCCCCEecCCCCCC------CCHHHHHHHHHCCCEEEecC--CCCHHHHH
Confidence 4899999998543 345678887775 4457899999998644 26788889999998888873 45677654
No 24
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=92.22 E-value=0.94 Score=43.66 Aligned_cols=66 Identities=27% Similarity=0.300 Sum_probs=44.2
Q ss_pred Hhhccccccccc---cCCCCCCcceee-CCcccCcceeeccccccccCCchhhHHHHHHHHhcCCceeecCCCCCcHH
Q 024846 73 AFHRITFRPRIL---VDVSRIDLSTTI-LDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIE 146 (261)
Q Consensus 73 Af~ri~L~pRvL---~dv~~~Dtsttl-lG~~ls~Pi~iAP~g~~~l~hp~gE~alArAA~~~Gi~~~lSs~ss~sle 146 (261)
.|+++.|+|..- +.-.++|+++.+ =+.++..||+-|||-.. .|..+|.+-++.|-..++--. .++|
T Consensus 4 tfdDVllvP~~s~v~~s~~dv~~~~~~~~~~~l~iPivsa~MDtV------te~~mAiama~~Gglgvih~~--~~~e 73 (352)
T PF00478_consen 4 TFDDVLLVPGRSTVLPSRSDVSLSTKLTRNITLKIPIVSAPMDTV------TESEMAIAMARLGGLGVIHRN--MSIE 73 (352)
T ss_dssp -GGGEEEE--SBSSTGGGGG-BEEEESSTSEEESSSEEE-SSTTT------SSHHHHHHHHHTTSEEEEESS--SCHH
T ss_pred ccccEEEecCCCCCCCCHhheECcccccCCEeecCceEecCcccc------chHHHHHHHHHhcCCceecCC--CCHH
Confidence 489999999874 344455565445 58899999999996433 377888888889888888643 4444
No 25
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=90.62 E-value=2.2 Score=39.78 Aligned_cols=88 Identities=15% Similarity=0.138 Sum_probs=57.7
Q ss_pred CcccCcceeeccccccccCCchhhHHHHHHHHhcCCceeecCCC-CC-------cHHHHHhhcC--CceeEEEeeecCHH
Q 024846 98 DYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTS-SS-------SIEEVAASCN--AVRFYQLYVFKKRD 167 (261)
Q Consensus 98 G~~ls~Pi~iAP~g~~~l~hp~gE~alArAA~~~Gi~~~lSs~s-s~-------sleeIa~~~~--~~~wfQLy~~~dr~ 167 (261)
|.++..|+++|||.+.. +.+.-+.|.+.|.-++.+-+- .. ....+....+ .+...||. -.+.+
T Consensus 3 ~~~~~~~l~lAPm~~~t------~~~fR~l~~~~g~~~~~temi~~~~l~~~~~~~~~~~~~~~~~~p~i~ql~-g~~~~ 75 (319)
T TIGR00737 3 NIQLKSRVVLAPMAGVT------DSPFRRLVAEYGAGLTVCEMVSSEAIVYDSQRTMRLLDIAEDETPISVQLF-GSDPD 75 (319)
T ss_pred CccCCCCEEecCCCCCC------cHHHHHHHHHHCCCEEEECCEEEhhhhcCCHHHHHHhhcCCccceEEEEEe-CCCHH
Confidence 45788999999987653 445556666767555544321 11 1222222222 45568885 45677
Q ss_pred HHHHHHHHHHHcCCcEEEEeecCCC
Q 024846 168 IAATLVQRAERNGFKALVLTADTPR 192 (261)
Q Consensus 168 ~~~~li~rAe~aG~~AlvvTVD~p~ 192 (261)
...+..++++++||.+|=|..-+|.
T Consensus 76 ~~~~aa~~~~~~G~d~IelN~gcP~ 100 (319)
T TIGR00737 76 TMAEAAKINEELGADIIDINMGCPV 100 (319)
T ss_pred HHHHHHHHHHhCCCCEEEEECCCCH
Confidence 7888899999999999999988873
No 26
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=88.56 E-value=4.8 Score=39.26 Aligned_cols=30 Identities=23% Similarity=0.390 Sum_probs=26.7
Q ss_pred cCHHHHHHHHHHHHHcCCcEEEEeecCCCC
Q 024846 164 KKRDIAATLVQRAERNGFKALVLTADTPRL 193 (261)
Q Consensus 164 ~dr~~~~~li~rAe~aG~~AlvvTVD~p~~ 193 (261)
.+.+...+++++++++|+.+|-|.+-+|..
T Consensus 124 ~s~~~~~~~a~~~e~~GaD~iELNiSCPn~ 153 (385)
T PLN02495 124 YNKDAWEEIIERVEETGVDALEINFSCPHG 153 (385)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEECCCCCC
Confidence 577888999999999999999999988774
No 27
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=88.52 E-value=4.5 Score=38.11 Aligned_cols=37 Identities=16% Similarity=-0.015 Sum_probs=28.9
Q ss_pred CceeEEEeeecCHHHHHHHHHHHHHcCCcEEEEeecCC
Q 024846 154 AVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTP 191 (261)
Q Consensus 154 ~~~wfQLy~~~dr~~~~~li~rAe~aG~~AlvvTVD~p 191 (261)
.+.+.|+.- .+.+...+..++++++|+.+|-|.+-++
T Consensus 100 ~pvi~si~g-~~~~~~~~~a~~~~~~gad~iElN~s~~ 136 (325)
T cd04739 100 IPVIASLNG-VSAGGWVDYARQIEEAGADALELNIYAL 136 (325)
T ss_pred CeEEEEeCC-CCHHHHHHHHHHHHhcCCCEEEEeCCCC
Confidence 456777743 3566678899999999999999999864
No 28
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=87.51 E-value=4.1 Score=39.30 Aligned_cols=69 Identities=26% Similarity=0.299 Sum_probs=50.5
Q ss_pred HhhccccccccccCC--CCCCcceeeC-----CcccCcceeeccccccccCCchhhHHHHHHHHhcCCceeecCCCCCcH
Q 024846 73 AFHRITFRPRILVDV--SRIDLSTTIL-----DYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSI 145 (261)
Q Consensus 73 Af~ri~L~pRvL~dv--~~~Dtsttll-----G~~ls~Pi~iAP~g~~~l~hp~gE~alArAA~~~Gi~~~lSs~ss~sl 145 (261)
.|+++.|+|+.-.=. +++|++.+|- -+.+..||+-|+|--. +|..+|.+-++.|...++-- ..++
T Consensus 10 ~f~DVll~P~~s~v~sRsevdl~~~~~~~~~~~~~~giPii~AnMdTV------~~~~mA~~la~~g~~~~iHk--~~~~ 81 (346)
T PRK05096 10 GFKDVLIRPKRSTLKSRSDVELERQFTFKHSGQSWSGVPIIAANMDTV------GTFEMAKALASFDILTAVHK--HYSV 81 (346)
T ss_pred CceeEEEecCcCccccHHHceecceeeeecccccccCCceEecCCCcc------ccHHHHHHHHHCCCeEEEec--CCCH
Confidence 489999999854422 4678876664 3446799999986322 68899999999999999953 3467
Q ss_pred HHHH
Q 024846 146 EEVA 149 (261)
Q Consensus 146 eeIa 149 (261)
|+-+
T Consensus 82 e~~~ 85 (346)
T PRK05096 82 EEWA 85 (346)
T ss_pred HHHH
Confidence 7644
No 29
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=86.72 E-value=8.3 Score=35.74 Aligned_cols=40 Identities=18% Similarity=0.151 Sum_probs=32.5
Q ss_pred CceeEEEeeecCHHHHHHHHHHHHHcCCcEEEEeecCCCC
Q 024846 154 AVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRL 193 (261)
Q Consensus 154 ~~~wfQLy~~~dr~~~~~li~rAe~aG~~AlvvTVD~p~~ 193 (261)
.+...|+.=..+.+...+.+++++++|+.+|-+.+.+|..
T Consensus 100 ~p~i~si~G~~~~~~~~~~a~~~~~~gad~ielN~sCP~~ 139 (299)
T cd02940 100 KILIASIMCEYNKEDWTELAKLVEEAGADALELNFSCPHG 139 (299)
T ss_pred CeEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCC
Confidence 3457787644477788888999998999999999999986
No 30
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=84.64 E-value=4.3 Score=35.53 Aligned_cols=81 Identities=19% Similarity=0.099 Sum_probs=47.7
Q ss_pred CcceeeccccccccCCchhhHHHHHHHHhcCCceeecCCCCCcHHH-------HHhhcCCceeEEEeeecCHHHHHHHHH
Q 024846 102 SAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEE-------VAASCNAVRFYQLYVFKKRDIAATLVQ 174 (261)
Q Consensus 102 s~Pi~iAP~g~~~l~hp~gE~alArAA~~~Gi~~~lSs~ss~slee-------Ia~~~~~~~wfQLy~~~dr~~~~~li~ 174 (261)
..||+.|||.+.. ....++++.+.|.+-.+|... .+.++ +.+..+.+.-+++.....+....+.++
T Consensus 2 ~~pi~~a~m~g~~------~~~~~~~~~~~G~ig~i~~~~-~~~~~~~~~~~~i~~~~~~~~~v~~i~~~~~~~~~~~~~ 74 (236)
T cd04730 2 RYPIIQAPMAGVS------TPELAAAVSNAGGLGFIGAGY-LTPEALRAEIRKIRALTDKPFGVNLLVPSSNPDFEALLE 74 (236)
T ss_pred CCCEECCCCCCCC------CHHHHHHHHhCCCccccCCCC-CCHHHHHHHHHHHHHhcCCCeEEeEecCCCCcCHHHHHH
Confidence 4799999986552 445666677777555554332 12222 222221122355554332134668899
Q ss_pred HHHHcCCcEEEEeec
Q 024846 175 RAERNGFKALVLTAD 189 (261)
Q Consensus 175 rAe~aG~~AlvvTVD 189 (261)
.+.++|+..|.+.-.
T Consensus 75 ~~~~~g~d~v~l~~~ 89 (236)
T cd04730 75 VALEEGVPVVSFSFG 89 (236)
T ss_pred HHHhCCCCEEEEcCC
Confidence 999999999988644
No 31
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=84.16 E-value=11 Score=34.59 Aligned_cols=96 Identities=14% Similarity=0.146 Sum_probs=58.6
Q ss_pred CcceeeCCcccCcceeeccccccccCCchhhHHHHHHHHhcCCceee-cCC--------------------------CCC
Q 024846 91 DLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVL-SFT--------------------------SSS 143 (261)
Q Consensus 91 DtsttllG~~ls~Pi~iAP~g~~~l~hp~gE~alArAA~~~Gi~~~l-Ss~--------------------------ss~ 143 (261)
|++|+++|.++.-||++|+-... ..+ ..++.+.+.|.-+++ +|. .+.
T Consensus 1 ~l~~~~~G~~~~nPv~~aag~~~----~~~--~~~~~~~~~g~g~v~~kti~~~~~~g~~~pr~~~~~~~~~n~~g~~~~ 74 (301)
T PRK07259 1 RLSVELPGLKLKNPVMPASGTFG----FGG--EYARFYDLNGLGAIVTKSTTLEPREGNPTPRIAETPGGMLNAIGLQNP 74 (301)
T ss_pred CCceEECCEECCCCcEECCcCCC----CCH--HHHHHhhhcCCcEEEeCCCCCCCCCCCCCCcEEecCCceeecCCCCCc
Confidence 68999999999999999862111 112 344444444443332 221 122
Q ss_pred cHHH----HHhhc---CCceeEEEeeecCHHHHHHHHHHHHHcC-CcEEEEeecCCCC
Q 024846 144 SIEE----VAASC---NAVRFYQLYVFKKRDIAATLVQRAERNG-FKALVLTADTPRL 193 (261)
Q Consensus 144 slee----Ia~~~---~~~~wfQLy~~~dr~~~~~li~rAe~aG-~~AlvvTVD~p~~ 193 (261)
+++. +.... ..+...|+.- .+.+...+..++++++| +.+|-+.+=+|..
T Consensus 75 g~~~~~~~~~~~~~~~~~p~i~si~g-~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~ 131 (301)
T PRK07259 75 GVDAFIEEELPWLEEFDTPIIANVAG-STEEEYAEVAEKLSKAPNVDAIELNISCPNV 131 (301)
T ss_pred CHHHHHHHHHHHHhccCCcEEEEecc-CCHHHHHHHHHHHhccCCcCEEEEECCCCCC
Confidence 3333 32221 2345667753 35677788899999999 9999998866653
No 32
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=81.78 E-value=5.8 Score=39.77 Aligned_cols=108 Identities=22% Similarity=0.326 Sum_probs=68.6
Q ss_pred Hhhcccccccccc-CCCCCCcceeeC-CcccCcceeeccccccccCCchhhHHHHHHHHhcCCceeecCCCCCcHHHHHh
Q 024846 73 AFHRITFRPRILV-DVSRIDLSTTIL-DYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAA 150 (261)
Q Consensus 73 Af~ri~L~pRvL~-dv~~~Dtsttll-G~~ls~Pi~iAP~g~~~l~hp~gE~alArAA~~~Gi~~~lSs~ss~sleeIa~ 150 (261)
.|+++.|.|..-. ...++|++|.+- ...+..||+-|||.-. .|..+|.+-+++|=..++.. +.++|+.++
T Consensus 19 t~ddv~l~p~~~~~~~~~v~~~t~l~~~~~l~~Pii~a~M~~v------t~~~ma~a~a~~GglGvi~~--~~~~e~~~~ 90 (495)
T PTZ00314 19 TYDDVILLPGYIDFSRDDVDLSTRLTRNIRLKIPIVSSPMDTV------TEHKMAIAMALMGGIGVIHN--NCSIEEQVE 90 (495)
T ss_pred CccceEecccccccccccccccccccCCcccCCceeecCcccc------ccHHHHHHHHHCCCeEEecC--CCCHHHHHH
Confidence 3899999998543 234567887765 3478899999997543 37788888888888888853 567877655
Q ss_pred hcC------CceeEE-EeeecCHHHHHHHHHHHHHcCCcEEEEeec
Q 024846 151 SCN------AVRFYQ-LYVFKKRDIAATLVQRAERNGFKALVLTAD 189 (261)
Q Consensus 151 ~~~------~~~wfQ-Ly~~~dr~~~~~li~rAe~aG~~AlvvTVD 189 (261)
... ...... +.+..+ ..+.+.++..++.++..+.|+-+
T Consensus 91 ~v~kvk~~e~g~i~dpvtv~pd-~tv~eA~~lm~~~~~s~vpVvd~ 135 (495)
T PTZ00314 91 EVRKVKRFENGFIMDPYVLSPN-HTVADVLEIKEKKGFSSILITVD 135 (495)
T ss_pred HHhhccccccccccCCeecCCC-CCHHHHHHHHHHcCCcEEEEEeC
Confidence 421 000000 112222 22345556667788888888654
No 33
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=81.57 E-value=5.8 Score=37.21 Aligned_cols=80 Identities=15% Similarity=0.137 Sum_probs=48.3
Q ss_pred eeCCcccCcceeeccccccccCCchhhHHHHHHHHhcCCceeecCCCCCcHHHH-------HhhcC---CceeEEEeeec
Q 024846 95 TILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEV-------AASCN---AVRFYQLYVFK 164 (261)
Q Consensus 95 tllG~~ls~Pi~iAP~g~~~l~hp~gE~alArAA~~~Gi~~~lSs~ss~sleeI-------a~~~~---~~~wfQLy~~~ 164 (261)
++||. ..||+.|||++. . ...++.++.++|...+++... .+.|++ .+..+ ++.++ +...
T Consensus 6 ~~lgi--~~Pii~apM~~~--s----~~~la~avs~aGglG~l~~~~-~~~~~l~~~i~~~~~~t~~pfgvn~~--~~~~ 74 (307)
T TIGR03151 6 DLLGI--EYPIFQGGMAWV--A----TGSLAAAVSNAGGLGIIGAGN-APPDVVRKEIRKVKELTDKPFGVNIM--LLSP 74 (307)
T ss_pred HHhCC--CCCEEcCCCCCC--C----CHHHHHHHHhCCCcceecccc-CCHHHHHHHHHHHHHhcCCCcEEeee--cCCC
Confidence 45654 579999999763 2 357888999999888888643 244433 33222 22221 1111
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEee
Q 024846 165 KRDIAATLVQRAERNGFKALVLTA 188 (261)
Q Consensus 165 dr~~~~~li~rAe~aG~~AlvvTV 188 (261)
...+.++.+.+.|++.+.++-
T Consensus 75 ---~~~~~~~~~~~~~v~~v~~~~ 95 (307)
T TIGR03151 75 ---FVDELVDLVIEEKVPVVTTGA 95 (307)
T ss_pred ---CHHHHHHHHHhCCCCEEEEcC
Confidence 124566667777888777643
No 34
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=80.95 E-value=18 Score=32.88 Aligned_cols=41 Identities=24% Similarity=0.286 Sum_probs=31.4
Q ss_pred CceeEEEeeecCHHHHHHHHHHHHHcCCcEEEEeecCCCCCC
Q 024846 154 AVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLGR 195 (261)
Q Consensus 154 ~~~wfQLy~~~dr~~~~~li~rAe~aG~~AlvvTVD~p~~G~ 195 (261)
.+...|+.- .+.+...+.+++++++|+.+|-|++.+|....
T Consensus 99 ~pvi~si~g-~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~ 139 (289)
T cd02810 99 QPLIASVGG-SSKEDYVELARKIERAGAKALELNLSCPNVGG 139 (289)
T ss_pred CeEEEEecc-CCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCC
Confidence 344566653 35677788899999999999999999987543
No 35
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=79.49 E-value=32 Score=31.44 Aligned_cols=41 Identities=10% Similarity=0.107 Sum_probs=32.0
Q ss_pred CceeEEEeeecCHHHHHHHHHHHHHcCCcEEEEeecCCCCCC
Q 024846 154 AVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLGR 195 (261)
Q Consensus 154 ~~~wfQLy~~~dr~~~~~li~rAe~aG~~AlvvTVD~p~~G~ 195 (261)
.+...||.- .+.+...+..++++++|+.+|-|++-+|..-.
T Consensus 90 ~p~ivsi~g-~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~ 130 (296)
T cd04740 90 TPVIASIAG-STVEEFVEVAEKLADAGADAIELNISCPNVKG 130 (296)
T ss_pred CcEEEEEec-CCHHHHHHHHHHHHHcCCCEEEEECCCCCCCC
Confidence 456678763 35667788899999999999999999887543
No 36
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=78.96 E-value=6.7 Score=39.03 Aligned_cols=106 Identities=22% Similarity=0.204 Sum_probs=59.7
Q ss_pred Hhhcccccccccc-CCCCCCcceeeC-CcccCcceeeccccccccCCchhhHHHHHHHHhcCCceeecCCCCCcHHHHHh
Q 024846 73 AFHRITFRPRILV-DVSRIDLSTTIL-DYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAA 150 (261)
Q Consensus 73 Af~ri~L~pRvL~-dv~~~Dtsttll-G~~ls~Pi~iAP~g~~~l~hp~gE~alArAA~~~Gi~~~lSs~ss~sleeIa~ 150 (261)
.|+++.|.|.... ..+++|++|.+- +..+..||+-|||.... |..++-+-++.|-.-++.. +.+.++..+
T Consensus 10 t~ddv~l~p~~~~~~~~~~~~~t~l~~~~~~~~Piv~a~m~~vT------~~ela~ava~~GglG~i~~--~~~~e~~~~ 81 (486)
T PRK05567 10 TFDDVLLVPAHSEVLPNDVDLSTQLTKNIRLNIPLLSAAMDTVT------EARMAIAMAREGGIGVIHK--NMSIEEQAE 81 (486)
T ss_pred CccceEecccccCcCcccccccchhhhhcCcCcCEEeCCCCCcC------HHHHHHHHHhCCCCCEecC--CCCHHHHHH
Confidence 3899999998553 234577777664 45577999999986542 4445555556655555652 334555332
Q ss_pred h------cCCceeEEE-eeecCHHHHHHHHHHHHHcCCcEEEEe
Q 024846 151 S------CNAVRFYQL-YVFKKRDIAATLVQRAERNGFKALVLT 187 (261)
Q Consensus 151 ~------~~~~~wfQL-y~~~dr~~~~~li~rAe~aG~~AlvvT 187 (261)
. ......-.. ....+ .-+.+.++...+.++..+.|+
T Consensus 82 ~I~~vk~~~dim~~~~v~i~~~-~tv~ea~~~m~~~~~~~lpVv 124 (486)
T PRK05567 82 EVRKVKRSESGVVTDPVTVTPD-TTLAEALALMARYGISGVPVV 124 (486)
T ss_pred HHHHhhhhhhcccCCCeEeCCC-CCHHHHHHHHHHhCCCEEEEE
Confidence 1 111100111 12222 234556666677788777664
No 37
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=77.34 E-value=39 Score=31.02 Aligned_cols=95 Identities=15% Similarity=0.234 Sum_probs=56.7
Q ss_pred cceeeCCcccCcceeeccccccccCCchhhHHHHHHHHhcCCceeec-C--------------------------CCCCc
Q 024846 92 LSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLS-F--------------------------TSSSS 144 (261)
Q Consensus 92 tsttllG~~ls~Pi~iAP~g~~~l~hp~gE~alArAA~~~Gi~~~lS-s--------------------------~ss~s 144 (261)
++|+++|.++..||++||.-. ....| ..+...+.|.-+++. | ..+.+
T Consensus 1 l~~~~~g~~l~npi~~aag~~----~~~~~--~~~~~~~~G~g~iv~kt~~~~~~~gn~~pr~~~~~~~~~n~~gl~~~g 74 (300)
T TIGR01037 1 LEVELFGIRFKNPLILASGIM----GSGVE--SLRRIDRSGAGAVVTKSIGLEPRPGYRNPTIVETPCGMLNAIGLQNPG 74 (300)
T ss_pred CcEEECCEECCCCCEeCCcCC----CCCHH--HHHHHHHcCCcEEEeCccccccccCCCCCeEEecccHHhhhccCCCcC
Confidence 478999999999999999321 11112 222233335554444 1 11223
Q ss_pred HHH----HHhh---cCCceeEEEeeecCHHHHHHHHHHHHHcC--CcEEEEeecCCCC
Q 024846 145 IEE----VAAS---CNAVRFYQLYVFKKRDIAATLVQRAERNG--FKALVLTADTPRL 193 (261)
Q Consensus 145 lee----Ia~~---~~~~~wfQLy~~~dr~~~~~li~rAe~aG--~~AlvvTVD~p~~ 193 (261)
++. +... .+.+...||.- .+.+...+..++.++++ +.+|-|-+=+|..
T Consensus 75 ~~~~~~~~~~~~~~~~~pl~~qi~g-~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~ 131 (300)
T TIGR01037 75 VEAFLEELKPVREEFPTPLIASVYG-SSVEEFAEVAEKLEKAPPYVDAYELNLSCPHV 131 (300)
T ss_pred HHHHHHHHHHHhccCCCcEEEEeec-CCHHHHHHHHHHHHhccCccCEEEEECCCCCC
Confidence 333 2221 12356788863 35666777888888764 8888888888875
No 38
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=76.44 E-value=24 Score=33.16 Aligned_cols=37 Identities=16% Similarity=-0.011 Sum_probs=27.3
Q ss_pred CceeEEEeeecCHHHHHHHHHHHHHcCCcEEEEeecCC
Q 024846 154 AVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTP 191 (261)
Q Consensus 154 ~~~wfQLy~~~dr~~~~~li~rAe~aG~~AlvvTVD~p 191 (261)
.+...|+.. .+.+...+.+++++++|+.+|-+.+-+|
T Consensus 102 ~pvi~sI~g-~~~~e~~~~a~~~~~agad~ielN~scp 138 (334)
T PRK07565 102 IPVIASLNG-SSAGGWVDYARQIEQAGADALELNIYYL 138 (334)
T ss_pred CcEEEEecc-CCHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 455667754 3455667888999999999999988653
No 39
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=75.69 E-value=35 Score=33.05 Aligned_cols=39 Identities=13% Similarity=0.122 Sum_probs=31.5
Q ss_pred CceeEEEeeecCHHHHHHHHHHHHHcCCcEEEEeecCCC
Q 024846 154 AVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPR 192 (261)
Q Consensus 154 ~~~wfQLy~~~dr~~~~~li~rAe~aG~~AlvvTVD~p~ 192 (261)
.+...||.-..+.+...+..+.++++|+.+|-|-+-+|.
T Consensus 100 ~p~i~si~g~~~~~~~~~~a~~~~~~g~d~ielN~scP~ 138 (420)
T PRK08318 100 RALIASIMVECNEEEWKEIAPLVEETGADGIELNFGCPH 138 (420)
T ss_pred ceEEEEeccCCCHHHHHHHHHHHHhcCCCEEEEeCCCCC
Confidence 334678764446777888999999999999999999988
No 40
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=75.38 E-value=7.3 Score=37.73 Aligned_cols=72 Identities=14% Similarity=0.210 Sum_probs=50.4
Q ss_pred EeeecCHHHHHHHHHHHHHcCCcEEEEeecCCCCCCchhHhhcCCCCC-Ccccccccccc--ccccc-cccccCcccch-
Q 024846 160 LYVFKKRDIAATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITP-PLKNLEGLLST--KVSSV-RILKLMPRDHG- 234 (261)
Q Consensus 160 Ly~~~dr~~~~~li~rAe~aG~~AlvvTVD~p~~G~Rerd~r~~f~~P-~~~~l~~~~~~--~~~~~-~k~~m~~~d~~- 234 (261)
+-...|.+.+.++.+..++||++-|.||- |.++.|.....| ....+..+.+. +++.+ ..+|++++|++
T Consensus 148 IRI~~d~~kTvd~ak~~e~aG~~~ltVHG-------Rtr~~kg~~~~pad~~~i~~v~~~~~~ipviaNGnI~~~~d~~~ 220 (358)
T KOG2335|consen 148 IRIFVDLEKTVDYAKMLEDAGVSLLTVHG-------RTREQKGLKTGPADWEAIKAVRENVPDIPVIANGNILSLEDVER 220 (358)
T ss_pred EEecCcHHHHHHHHHHHHhCCCcEEEEec-------ccHHhcCCCCCCcCHHHHHHHHHhCcCCcEEeeCCcCcHHHHHH
Confidence 45568999999999999999999988763 556667655445 33333333322 27755 45589999999
Q ss_pred hhhh
Q 024846 235 CFFK 238 (261)
Q Consensus 235 ~~~~ 238 (261)
|.+-
T Consensus 221 ~~~~ 224 (358)
T KOG2335|consen 221 CLKY 224 (358)
T ss_pred HHHH
Confidence 8873
No 41
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=72.75 E-value=18 Score=34.06 Aligned_cols=83 Identities=13% Similarity=0.061 Sum_probs=51.6
Q ss_pred cceeeccccccccCCchhhHHHHHHHHhcC-CceeecCCCC--------CcHHHHHh------hc--CCceeEEEeeecC
Q 024846 103 APIIIAPTALHKLANPEGEVATARAAASCN-TIMVLSFTSS--------SSIEEVAA------SC--NAVRFYQLYVFKK 165 (261)
Q Consensus 103 ~Pi~iAP~g~~~l~hp~gE~alArAA~~~G-i~~~lSs~ss--------~sleeIa~------~~--~~~~wfQLy~~~d 165 (261)
||+++|||++.. +...=+.|.+.| .-.+.+-+-+ .....+.. .. ..+..+||. -.|
T Consensus 1 ~~~~lAPMag~t------d~~fR~l~~~~g~~~~~~temvs~~~~~~~~~~~~~~~~~~~~~~~~~~e~p~~vQl~-g~~ 73 (312)
T PRK10550 1 MRVLLAPMEGVL------DSLVRELLTEVNDYDLCITEFLRVVDQLLPVKVFHRLCPELHNASRTPSGTLVRIQLL-GQY 73 (312)
T ss_pred CCeEEECCCCCc------CHHHHHHHHHhCCCCEEEeCCEEechhcccchhHHHHhHHhcccCCCCCCCcEEEEec-cCC
Confidence 699999987754 334444555555 3344432211 12222221 11 246678986 456
Q ss_pred HHHHHHHHHHHHHcCCcEEEEeecCCC
Q 024846 166 RDIAATLVQRAERNGFKALVLTADTPR 192 (261)
Q Consensus 166 r~~~~~li~rAe~aG~~AlvvTVD~p~ 192 (261)
.+...+..++++++|+..|=+..-+|.
T Consensus 74 p~~~~~aA~~~~~~g~d~IdiN~GCP~ 100 (312)
T PRK10550 74 PQWLAENAARAVELGSWGVDLNCGCPS 100 (312)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCc
Confidence 777778888999999999888888875
No 42
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=71.75 E-value=26 Score=32.29 Aligned_cols=84 Identities=13% Similarity=0.032 Sum_probs=54.6
Q ss_pred cceeeccccccccCCchhhHHHHHHHHhcCCcee--ecCC---CCCcHHHH-------HhhcCC--ceeEEEeeecCHHH
Q 024846 103 APIIIAPTALHKLANPEGEVATARAAASCNTIMV--LSFT---SSSSIEEV-------AASCNA--VRFYQLYVFKKRDI 168 (261)
Q Consensus 103 ~Pi~iAP~g~~~l~hp~gE~alArAA~~~Gi~~~--lSs~---ss~sleeI-------a~~~~~--~~wfQLy~~~dr~~ 168 (261)
.|.++.|+.-.+-.+.++-..+++-..+.|+-.+ .||. .+-+.||- .+..++ +.+.++- . +-..
T Consensus 5 ~~a~vTPf~~dg~iD~~~l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~-~-~t~~ 82 (289)
T cd00951 5 LSFPVTHFDADGSFDEDAYRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAG-Y-GTAT 82 (289)
T ss_pred EEEeecCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecC-C-CHHH
Confidence 3666778765555566676788888888887544 3332 33455542 222222 3344443 3 6777
Q ss_pred HHHHHHHHHHcCCcEEEEee
Q 024846 169 AATLVQRAERNGFKALVLTA 188 (261)
Q Consensus 169 ~~~li~rAe~aG~~AlvvTV 188 (261)
+.++.++|+++|+.++++.-
T Consensus 83 ~i~~a~~a~~~Gad~v~~~p 102 (289)
T cd00951 83 AIAYAQAAEKAGADGILLLP 102 (289)
T ss_pred HHHHHHHHHHhCCCEEEECC
Confidence 88999999999999999843
No 43
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=71.39 E-value=11 Score=35.42 Aligned_cols=46 Identities=15% Similarity=0.187 Sum_probs=32.1
Q ss_pred hhcHHHHHHHhhccccccccc-cCCCCCCcceeeCCcccCcceeecc
Q 024846 64 EHTLKENVEAFHRITFRPRIL-VDVSRIDLSTTILDYKISAPIIIAP 109 (261)
Q Consensus 64 e~T~~~N~~Af~ri~L~pRvL-~dv~~~DtsttllG~~ls~Pi~iAP 109 (261)
|.+.+-...+++.+...|=.+ +....+|++|+++|.++..||++|.
T Consensus 10 ~~~h~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~Gl~l~nPi~~As 56 (327)
T cd04738 10 ETAHRLAIRALKLGLGPPLLLLLVYDDPRLEVEVFGLTFPNPVGLAA 56 (327)
T ss_pred HHHHHHHHHHHHhcCCCCCccccCCCCCCcceEECCEECCCCCEeCc
Confidence 445555566665555444221 3567789999999999999998865
No 44
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=71.35 E-value=26 Score=33.02 Aligned_cols=88 Identities=15% Similarity=0.110 Sum_probs=57.1
Q ss_pred CcccCcceeeccccccccCCchhhHHHHHHHHhcCCceeecCCCCC-cHH---HHH--h--hc--CCceeEEEeeecCHH
Q 024846 98 DYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSS-SIE---EVA--A--SC--NAVRFYQLYVFKKRD 167 (261)
Q Consensus 98 G~~ls~Pi~iAP~g~~~l~hp~gE~alArAA~~~Gi~~~lSs~ss~-sle---eIa--~--~~--~~~~wfQLy~~~dr~ 167 (261)
+..+..|+++|||++.. +...-+.|.+.|..++.+.+-+. ++. +.. . .. +.+.-+||. -.|.+
T Consensus 5 ~~~~~~~~~lAPM~g~t------d~~fR~l~~~~g~~~~~temvs~~~~~~~~~~~~~~~~~~~~~~~~~vQl~-g~~~~ 77 (321)
T PRK10415 5 QYQLRNRLIAAPMAGIT------DRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQIA-GSDPK 77 (321)
T ss_pred CccCCCCEEecCCCCCC------cHHHHHHHHHHCCCEEEEccEEcchhhhcCHhHHHHhccCccCCCEEEEEe-CCCHH
Confidence 34577899999987653 55666677777766655433221 110 111 1 11 234457884 45677
Q ss_pred HHHHHHHHHHHcCCcEEEEeecCCC
Q 024846 168 IAATLVQRAERNGFKALVLTADTPR 192 (261)
Q Consensus 168 ~~~~li~rAe~aG~~AlvvTVD~p~ 192 (261)
...+..+++++.|++.|=+..=+|.
T Consensus 78 ~~~~aa~~~~~~g~d~IdlN~gCP~ 102 (321)
T PRK10415 78 EMADAARINVESGAQIIDINMGCPA 102 (321)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCCCH
Confidence 7777888888899999999988886
No 45
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=69.51 E-value=29 Score=32.19 Aligned_cols=84 Identities=13% Similarity=0.010 Sum_probs=54.3
Q ss_pred cceeeccccccccCCchhhHHHHHHHHhcCCcee--ecC---CCCCcHHH-------HHhhcC--CceeEEEeeecCHHH
Q 024846 103 APIIIAPTALHKLANPEGEVATARAAASCNTIMV--LSF---TSSSSIEE-------VAASCN--AVRFYQLYVFKKRDI 168 (261)
Q Consensus 103 ~Pi~iAP~g~~~l~hp~gE~alArAA~~~Gi~~~--lSs---~ss~slee-------Ia~~~~--~~~wfQLy~~~dr~~ 168 (261)
.|.++.|+--.+-.+.++-..+++-..+.|+-.+ .|| +.+-+.|| +.+..+ -+.+..+- .+-..
T Consensus 12 ~~a~vTPf~~dg~iD~~~l~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~--~~t~~ 89 (303)
T PRK03620 12 LSFPVTPFDADGSFDEAAYREHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAG--GGTAQ 89 (303)
T ss_pred EEeeeCCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC--CCHHH
Confidence 5777788765555566666788888888887544 333 23345554 223233 23344443 36677
Q ss_pred HHHHHHHHHHcCCcEEEEee
Q 024846 169 AATLVQRAERNGFKALVLTA 188 (261)
Q Consensus 169 ~~~li~rAe~aG~~AlvvTV 188 (261)
+.+++++|+++|+.++++.-
T Consensus 90 ~i~~~~~a~~~Gadav~~~p 109 (303)
T PRK03620 90 AIEYAQAAERAGADGILLLP 109 (303)
T ss_pred HHHHHHHHHHhCCCEEEECC
Confidence 88999999999999998854
No 46
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=69.11 E-value=14 Score=35.84 Aligned_cols=47 Identities=23% Similarity=0.162 Sum_probs=36.8
Q ss_pred cCcceeeccccccccCCchhhHHHHHHHHhcCCceeecCCCCCcHHHHH
Q 024846 101 ISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVA 149 (261)
Q Consensus 101 ls~Pi~iAP~g~~~l~hp~gE~alArAA~~~Gi~~~lSs~ss~sleeIa 149 (261)
+..||+++||+...+ -.+.-.++|.||..+|....+|... .+.+++.
T Consensus 76 i~~Pi~~~~Ms~Gs~-s~~a~~aLa~aa~~aG~~~~~Gegg-~~~~~~~ 122 (392)
T cd02808 76 LDSPFNISAMSFGAL-SKEAKEALAIGAALAGTASNTGEGG-ELPEERE 122 (392)
T ss_pred cccceEecCCCCCcc-cHHHHHHHHHHHHhcCCceeecCCC-CCHHHHh
Confidence 488999999986654 4556799999999999999999654 4455553
No 47
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=68.72 E-value=54 Score=30.70 Aligned_cols=96 Identities=11% Similarity=0.096 Sum_probs=55.9
Q ss_pred CcceeeCCcccCcceeeccccccccCCchhhHHHHHHHHhcCCceeec-CC--------------------------CCC
Q 024846 91 DLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLS-FT--------------------------SSS 143 (261)
Q Consensus 91 DtsttllG~~ls~Pi~iAP~g~~~l~hp~gE~alArAA~~~Gi~~~lS-s~--------------------------ss~ 143 (261)
|++|+++|.++.-||++|.-... ..+|. .+...++|.-+++- |. .+.
T Consensus 1 dL~~~~~Gl~l~NPv~~AsG~~~----~~~e~--~~~~~~~g~Gavv~ktit~~p~~gn~~pr~~~~~~~~~N~~Gl~n~ 74 (310)
T PRK02506 1 STSTQIAGFKFDNCLMNAAGVYC----MTKEE--LEEVEASAAGAFVTKSATLEPRPGNPEPRYADTPLGSINSMGLPNL 74 (310)
T ss_pred CCceEECCEECCCCCEeCCCCCC----CCHHH--HHHHHHcCCcEEEeCccCCCCCCCCCCCeEEECcchhhccCCCCCc
Confidence 67899999999999999873221 11232 22244444433321 11 122
Q ss_pred cHHHHH----hh---cC-CceeEEEeeecCHHHHHHHHHHHHHcC-CcEEEEeecCCCC
Q 024846 144 SIEEVA----AS---CN-AVRFYQLYVFKKRDIAATLVQRAERNG-FKALVLTADTPRL 193 (261)
Q Consensus 144 sleeIa----~~---~~-~~~wfQLy~~~dr~~~~~li~rAe~aG-~~AlvvTVD~p~~ 193 (261)
.++.+. +. .+ .+...++ .-.+.+...++.++++++| +.+|-|-+-+|..
T Consensus 75 g~~~~~~~i~~~~~~~~~~pvI~Si-~G~~~~~~~~~a~~~~~~g~ad~iElN~ScPn~ 132 (310)
T PRK02506 75 GFDYYLDYVLELQKKGPNKPHFLSV-VGLSPEETHTILKKIQASDFNGLVELNLSCPNV 132 (310)
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEEE-EeCcHHHHHHHHHHHhhcCCCCEEEEECCCCCC
Confidence 333322 21 11 2223333 2345667778888999998 8999999998853
No 48
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=67.72 E-value=43 Score=30.26 Aligned_cols=133 Identities=16% Similarity=0.166 Sum_probs=68.6
Q ss_pred hhhcCCccchhcHHHHHHHhhcccc---ccccccC--CCCCCcc-eeeCCcccCcceeeccccccccCCchhhHHHHHHH
Q 024846 55 DFYAGGAEDEHTLKENVEAFHRITF---RPRILVD--VSRIDLS-TTILDYKISAPIIIAPTALHKLANPEGEVATARAA 128 (261)
Q Consensus 55 ~Y~~gGa~de~T~~~N~~Af~ri~L---~pRvL~d--v~~~Dts-ttllG~~ls~Pi~iAP~g~~~l~hp~gE~alArAA 128 (261)
.-++||.+.-.++..=...++=+.| .|.--.. ...+..+ ++....-+..|++.-|+.+. ..+-+..+.++.
T Consensus 5 ~l~SGGKDS~~al~~a~~~~~v~~L~t~~~~~~~s~~~H~~~~~~~~~qA~algipl~~~~~~~~---~e~~~e~l~~~l 81 (223)
T TIGR00290 5 ALISGGKDSCLALYHALKEHEVISLVNIMPENEESYMFHGVNAHLTDLQAESIGIPLIKLYTEGT---EEDEVEELKGIL 81 (223)
T ss_pred EEecCcHHHHHHHHHHHHhCeeEEEEEEecCCCCcccccccCHHHHHHHHHHcCCCeEEeecCCC---ccHHHHHHHHHH
Confidence 4568888888877654433322222 1110000 0001111 11233445667655443222 122346677777
Q ss_pred HhcCCceeec-CCCC----CcHHHHHhhcCCceeEEEeeecCHHHHHHHHHHHHHcCCcEEEEeecCCCCC
Q 024846 129 ASCNTIMVLS-FTSS----SSIEEVAASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLG 194 (261)
Q Consensus 129 ~~~Gi~~~lS-s~ss----~sleeIa~~~~~~~wfQLy~~~dr~~~~~li~rAe~aG~~AlvvTVD~p~~G 194 (261)
.+.|+-.++. ...+ .-+|.+++..+=.. ++|.|.++ .++++++..++|++++++.|++..++
T Consensus 82 ~~~gv~~vv~GdI~s~~qr~~~e~v~~~lgl~~---~~PLW~~~-~~~ll~e~i~~G~~aiIv~v~a~gL~ 148 (223)
T TIGR00290 82 HTLDVEAVVFGAIYSEYQKTRIERVCRELGLKS---FAPLWHRD-PEKLMEEFVEEKFEARIIAVAAEGLD 148 (223)
T ss_pred HHcCCCEEEECCcccHHHHHHHHHHHHhcCCEE---eccccCCC-HHHHHHHHHHcCCeEEEEEEecCCCC
Confidence 7778755554 3332 33455665554112 22323222 24688888899999999999997765
No 49
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=67.33 E-value=57 Score=26.45 Aligned_cols=73 Identities=19% Similarity=0.143 Sum_probs=46.0
Q ss_pred hhHHHHHHHHhcCCceeec-CCC-----C--Cc---HHHHHhhcCCceeEEEeeecCHHHHHHHHHHHHHcCCcEEEEee
Q 024846 120 GEVATARAAASCNTIMVLS-FTS-----S--SS---IEEVAASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTA 188 (261)
Q Consensus 120 gE~alArAA~~~Gi~~~lS-s~s-----s--~s---leeIa~~~~~~~wfQLy~~~dr~~~~~li~rAe~aG~~AlvvTV 188 (261)
.....++.+.+.|+-++.- +.. . .. ++.+....+.+.+.|++.....+......++++++|+.+|.|+.
T Consensus 13 ~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~d~v~l~~ 92 (200)
T cd04722 13 DPVELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAETDLPLGVQLAINDAAAAVDIAAAAARAAGADGVEIHG 92 (200)
T ss_pred HHHHHHHHHHcCCCCEEEEeeEEECcccCCCccccHHHHHHhhcCCcEEEEEccCCchhhhhHHHHHHHHcCCCEEEEec
Confidence 3467788888877644332 111 0 11 44444444456788888655444444446789999999999998
Q ss_pred cCCC
Q 024846 189 DTPR 192 (261)
Q Consensus 189 D~p~ 192 (261)
..+.
T Consensus 93 ~~~~ 96 (200)
T cd04722 93 AVGY 96 (200)
T ss_pred cCCc
Confidence 8764
No 50
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=66.68 E-value=12 Score=35.04 Aligned_cols=67 Identities=15% Similarity=0.151 Sum_probs=44.2
Q ss_pred CchhhHHHHHHHHhcCCceeecCCCC----CcHHHHH-------hhcCCceeEEEeeecCHHHHHHHHHHHHHcCCcEEE
Q 024846 117 NPEGEVATARAAASCNTIMVLSFTSS----SSIEEVA-------ASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALV 185 (261)
Q Consensus 117 hp~gE~alArAA~~~Gi~~~lSs~ss----~sleeIa-------~~~~~~~wfQLy~~~dr~~~~~li~rAe~aG~~Alv 185 (261)
+.+-=.++.+||++.+.|.++..... .+++.+. +...-+-. +.-|.....+.+.+|-++||.-++
T Consensus 25 n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~VPVa----lHLDHg~~~e~i~~ai~~GFtSVM 100 (282)
T TIGR01858 25 NLETIQAVVETAAEMRSPVILAGTPGTFKHAGTEYIVALCSAASTTYNMPLA----LHLDHHESLDDIRQKVHAGVRSAM 100 (282)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeCccHHhhCCHHHHHHHHHHHHHHCCCCEE----EECCCCCCHHHHHHHHHcCCCEEe
Confidence 44445889999999999999874321 2344332 22223333 334777777889999999998877
Q ss_pred Ee
Q 024846 186 LT 187 (261)
Q Consensus 186 vT 187 (261)
++
T Consensus 101 ~D 102 (282)
T TIGR01858 101 ID 102 (282)
T ss_pred ec
Confidence 65
No 51
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=65.56 E-value=49 Score=30.25 Aligned_cols=85 Identities=12% Similarity=0.021 Sum_probs=54.6
Q ss_pred cceeeccccccccCCchhhHHHHHHHHhcCCceee--cC---CCCCcHHHH-------HhhcCC--ceeEEEeeecCHHH
Q 024846 103 APIIIAPTALHKLANPEGEVATARAAASCNTIMVL--SF---TSSSSIEEV-------AASCNA--VRFYQLYVFKKRDI 168 (261)
Q Consensus 103 ~Pi~iAP~g~~~l~hp~gE~alArAA~~~Gi~~~l--Ss---~ss~sleeI-------a~~~~~--~~wfQLy~~~dr~~ 168 (261)
.|.++.|+.-.+-.+.++-..+++-..+.|+-.++ || ..+-+.+|- .+..++ +.+.++- ..+-+.
T Consensus 6 ~~~~~TPf~~dg~iD~~~l~~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~-~~~~~~ 84 (292)
T PRK03170 6 ITALVTPFKEDGSVDFAALRKLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTG-SNSTAE 84 (292)
T ss_pred eeeeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecC-CchHHH
Confidence 46777787555556666778888888888875543 33 233455542 233332 3333332 235677
Q ss_pred HHHHHHHHHHcCCcEEEEee
Q 024846 169 AATLVQRAERNGFKALVLTA 188 (261)
Q Consensus 169 ~~~li~rAe~aG~~AlvvTV 188 (261)
+.++.+.|+++|+.++++.-
T Consensus 85 ~i~~a~~a~~~G~d~v~~~p 104 (292)
T PRK03170 85 AIELTKFAEKAGADGALVVT 104 (292)
T ss_pred HHHHHHHHHHcCCCEEEECC
Confidence 88999999999999999964
No 52
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=65.29 E-value=34 Score=33.73 Aligned_cols=108 Identities=25% Similarity=0.300 Sum_probs=60.7
Q ss_pred hhcccccccccc-CCCCCCcceeeC-CcccCcceeeccccccccCCchhhHHHHHHHHhcCCceeecCCCCCcHHHHHhh
Q 024846 74 FHRITFRPRILV-DVSRIDLSTTIL-DYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAAS 151 (261)
Q Consensus 74 f~ri~L~pRvL~-dv~~~Dtsttll-G~~ls~Pi~iAP~g~~~l~hp~gE~alArAA~~~Gi~~~lSs~ss~sleeIa~~ 151 (261)
|+++.|.|..-. ..+++|++|.+= +.++..||+-|||.... |..++.+-++.|-.-++-. +.++|+-++.
T Consensus 4 ~ddv~l~p~~~~~~~~~~~~~~~~~~~~~l~~p~~s~~mdtvT------e~ema~~ma~~gg~GvI~~--n~~~e~q~~~ 75 (450)
T TIGR01302 4 FDDVLLLPGFIDVEPDDVDLSTRITRNIKLNIPILSSPMDTVT------ESRMAIAMAREGGIGVIHR--NMSIEEQAEQ 75 (450)
T ss_pred ccceEecccccccCccccccccccccccCcCCCeeecCCCccC------HHHHHHHHHhcCCCceeec--CCCHHHHHHH
Confidence 889999998543 234678888876 78899999999975432 3444444444443333432 2345433221
Q ss_pred ----c--CCceeEEE-eeecCHHHHHHHHHHHHHcCCcEEEEeecC
Q 024846 152 ----C--NAVRFYQL-YVFKKRDIAATLVQRAERNGFKALVLTADT 190 (261)
Q Consensus 152 ----~--~~~~wfQL-y~~~dr~~~~~li~rAe~aG~~AlvvTVD~ 190 (261)
. ....--++ .+..+ .-+.+.++...+.++..+.|+=+.
T Consensus 76 V~~Vk~~~~~~~~~~vtl~~~-~tv~eal~~m~~~~~s~lpVvd~~ 120 (450)
T TIGR01302 76 VKRVKRAENGIISDPVTISPE-TTVADVLELMERKGISGIPVVEDG 120 (450)
T ss_pred HhhhccccCceecCceEeCCC-CCHHHHHHHHHHcCCCEEEEEeCC
Confidence 1 11000011 12222 234556666777889888886543
No 53
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=64.86 E-value=22 Score=35.81 Aligned_cols=106 Identities=21% Similarity=0.303 Sum_probs=63.4
Q ss_pred Hhhcccccccccc-CCCCCCcceeeC-CcccCcceeeccccccccCCchhhHHHHHHHHhcCCceeecCCCCCcHHHHHh
Q 024846 73 AFHRITFRPRILV-DVSRIDLSTTIL-DYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAA 150 (261)
Q Consensus 73 Af~ri~L~pRvL~-dv~~~Dtsttll-G~~ls~Pi~iAP~g~~~l~hp~gE~alArAA~~~Gi~~~lSs~ss~sleeIa~ 150 (261)
-|+++.|.|..-. ..+++|++|.+- ...+..||+-|||.... |..+|.|-+++|-..++.. ..+.|+..+
T Consensus 23 tfddv~l~p~~~~~~~~~~~~~t~lt~~~~~~~Pivsa~M~~vt------~~~lA~Ama~aGGiGfI~~--~as~E~q~~ 94 (505)
T PLN02274 23 TYDDVIFHPGYIDFPADAVDLSTRLSRNIPLSIPCVSSPMDTVT------ESDMAIAMAALGGIGIVHY--NNTAEEQAA 94 (505)
T ss_pred CccceEecccccCcCCcccccccccccccCcCCCEeccCCcccc------hHHHHHHHHhCCCeEEEcC--CCCHHHHHH
Confidence 4899999998543 234567765553 34567899999985442 6677777788876666764 344555432
Q ss_pred hc------C-C--ceeEEEeeecCHHHHHHHHHHHHHcCCcEEEEeec
Q 024846 151 SC------N-A--VRFYQLYVFKKRDIAATLVQRAERNGFKALVLTAD 189 (261)
Q Consensus 151 ~~------~-~--~~wfQLy~~~dr~~~~~li~rAe~aG~~AlvvTVD 189 (261)
.. . + ... +.+..+.. +.+.++...+.++..+.|+-+
T Consensus 95 ~Irkvk~~~~gmi~dp--vtV~pd~t-V~dA~~lm~~~~~~~lpVvD~ 139 (505)
T PLN02274 95 IVRKAKSRRVGFVSDP--VVKSPSST-ISSLDELKASRGFSSVCVTET 139 (505)
T ss_pred HHHHhhcccccccCCC--eeeCCCCc-HHHHHHHHHhcCCceEEEEeC
Confidence 21 1 1 011 22233332 344556667788888888643
No 54
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=64.59 E-value=13 Score=34.89 Aligned_cols=68 Identities=13% Similarity=0.146 Sum_probs=45.1
Q ss_pred CCchhhHHHHHHHHhcCCceeecCCCC----CcHHHHH-------hhcCCceeEEEeeecCHHHHHHHHHHHHHcCCcEE
Q 024846 116 ANPEGEVATARAAASCNTIMVLSFTSS----SSIEEVA-------ASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKAL 184 (261)
Q Consensus 116 ~hp~gE~alArAA~~~Gi~~~lSs~ss----~sleeIa-------~~~~~~~wfQLy~~~dr~~~~~li~rAe~aG~~Al 184 (261)
.+.+.=.++.+||++.+.|.++...-. .+++.+. +...-+ +.+.-|.....+.+++|-++||.-+
T Consensus 26 ~n~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~~~~A~~~~VP----V~lHLDHg~~~e~i~~Ai~~GftSV 101 (284)
T PRK09195 26 HNLETMQVVVETAAELHSPVIIAGTPGTFSYAGTEYLLAIVSAAAKQYHHP----LALHLDHHEKFDDIAQKVRSGVRSV 101 (284)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEcChhHHhhCCHHHHHHHHHHHHHHCCCC----EEEECCCCCCHHHHHHHHHcCCCEE
Confidence 344445899999999999999974321 3344332 222223 3334477777788999999999887
Q ss_pred EEe
Q 024846 185 VLT 187 (261)
Q Consensus 185 vvT 187 (261)
+++
T Consensus 102 M~D 104 (284)
T PRK09195 102 MID 104 (284)
T ss_pred EeC
Confidence 765
No 55
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=64.12 E-value=17 Score=34.53 Aligned_cols=23 Identities=17% Similarity=0.335 Sum_probs=20.1
Q ss_pred CCCCCcceeeCCcccCcceeecc
Q 024846 87 VSRIDLSTTILDYKISAPIIIAP 109 (261)
Q Consensus 87 v~~~DtsttllG~~ls~Pi~iAP 109 (261)
..+++++|+++|.++..||++|.
T Consensus 44 ~~~~~L~~~~~Gl~l~nPi~~As 66 (344)
T PRK05286 44 YTDPRLPVTVMGLTFPNPVGLAA 66 (344)
T ss_pred CCCCCCceEECCEECCCCCEECC
Confidence 45678999999999999998865
No 56
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=63.68 E-value=54 Score=31.03 Aligned_cols=91 Identities=14% Similarity=-0.012 Sum_probs=55.9
Q ss_pred CcccCcceeeccccccccCCchhhHHHHHHHHhcCC-ceeecCCC-C-----CcHHHHHhhcC--CceeEEEeeecCHHH
Q 024846 98 DYKISAPIIIAPTALHKLANPEGEVATARAAASCNT-IMVLSFTS-S-----SSIEEVAASCN--AVRFYQLYVFKKRDI 168 (261)
Q Consensus 98 G~~ls~Pi~iAP~g~~~l~hp~gE~alArAA~~~Gi-~~~lSs~s-s-----~sleeIa~~~~--~~~wfQLy~~~dr~~ 168 (261)
+.....|+++|||++.. +...=+-|.+.|. -.+.+.+- . ..........+ .+..+||. -.|.+.
T Consensus 6 ~~~~~~~~~lAPM~g~t------d~~fR~~~~~~g~~~~~~temv~~~~l~~~~~~~~l~~~~~e~p~~vQl~-g~~p~~ 78 (333)
T PRK11815 6 SKLPSRRFSVAPMMDWT------DRHCRYFHRLLSRHALLYTEMVTTGAIIHGDRERLLAFDPEEHPVALQLG-GSDPAD 78 (333)
T ss_pred ccCCCCCEEEeCCCCCc------CHHHHHHHHHhCCCCEEEECCEEeccccccCHHHHhccCCCCCcEEEEEe-CCCHHH
Confidence 34567799999987654 3333344555564 23333221 1 11222222222 46788986 456777
Q ss_pred HHHHHHHHHHcCCcEEEEeecCCCCCC
Q 024846 169 AATLVQRAERNGFKALVLTADTPRLGR 195 (261)
Q Consensus 169 ~~~li~rAe~aG~~AlvvTVD~p~~G~ 195 (261)
..+-.++++++|+.+|=|..-+|..-.
T Consensus 79 ~~~aA~~~~~~g~d~IdlN~gCP~~~v 105 (333)
T PRK11815 79 LAEAAKLAEDWGYDEINLNVGCPSDRV 105 (333)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCHHHc
Confidence 778889999999999988888877533
No 57
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=63.47 E-value=23 Score=35.52 Aligned_cols=105 Identities=16% Similarity=0.172 Sum_probs=62.2
Q ss_pred HhhccccccccccC-C-CCCCcceeeCCcccCcceeeccccccccCCchhhHHHHHHHHhcCCceeecCCCCCcHHHHHh
Q 024846 73 AFHRITFRPRILVD-V-SRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAA 150 (261)
Q Consensus 73 Af~ri~L~pRvL~d-v-~~~DtsttllG~~ls~Pi~iAP~g~~~l~hp~gE~alArAA~~~Gi~~~lSs~ss~sleeIa~ 150 (261)
.|+++.|.|....- . +++|++|+ +...+..||+-|||-.. .|..+|.+-++.|=..++-. +.+.++..+
T Consensus 14 tfddvll~p~~~~~~~~~~v~~~t~-~~~~l~~Pi~sa~Mdtv------t~~~MAiaLAr~GGiGvih~--nl~~~~q~~ 84 (479)
T PRK07807 14 TYDDVFLVPSRSDVGSRFDVDLSTA-DGTGTTIPLVVANMTAV------AGRRMAETVARRGGLVVLPQ--DIPIDVVAE 84 (479)
T ss_pred CccceEecccccCccCCCceecccC-CCCccccceeecCCcch------hHHHHHHHHHHCCCceEeeC--CCCHHHHHH
Confidence 38999999986642 2 36788887 58899999999997433 37778888777774444432 233444332
Q ss_pred hc---C--CceeE-EEeeecCHHHHHHHHHHHHHcCCcEEEEe
Q 024846 151 SC---N--AVRFY-QLYVFKKRDIAATLVQRAERNGFKALVLT 187 (261)
Q Consensus 151 ~~---~--~~~wf-QLy~~~dr~~~~~li~rAe~aG~~AlvvT 187 (261)
.. . ...-- .+..+.+. -+.+.+++..+.+...+.|+
T Consensus 85 ~l~~VKv~~iMi~~pvtv~~d~-tv~eA~~~m~~~~~s~l~VV 126 (479)
T PRK07807 85 VVAWVKSRDLVFDTPVTLSPDD-TVGDALALLPKRAHGAVVVV 126 (479)
T ss_pred HHhhcccccccccCCeEECCCC-CHHHHHHHHHhcCCceEEEE
Confidence 21 1 10000 01223332 24455555666777777764
No 58
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=63.36 E-value=15 Score=34.45 Aligned_cols=67 Identities=16% Similarity=0.209 Sum_probs=45.0
Q ss_pred CchhhHHHHHHHHhcCCceeecCCCC----CcHHHHH-------hhcCCceeEEEeeecCHHHHHHHHHHHHHcCCcEEE
Q 024846 117 NPEGEVATARAAASCNTIMVLSFTSS----SSIEEVA-------ASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALV 185 (261)
Q Consensus 117 hp~gE~alArAA~~~Gi~~~lSs~ss----~sleeIa-------~~~~~~~wfQLy~~~dr~~~~~li~rAe~aG~~Alv 185 (261)
+.+-=.++.+||++.+.|.++..... .+++.+. +...-+ +.+.-|.....+.+.+|-++||.-++
T Consensus 27 n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~VP----ValHLDHg~~~e~i~~ai~~GFtSVM 102 (286)
T PRK12738 27 NAETIQAILEVCSEMRSPVILAGTPGTFKHIALEEIYALCSAYSTTYNMP----LALHLDHHESLDDIRRKVHAGVRSAM 102 (286)
T ss_pred CHHHHHHHHHHHHHHCCCEEEEcCcchhhhCCHHHHHHHHHHHHHHCCCC----EEEECCCCCCHHHHHHHHHcCCCeEe
Confidence 44445899999999999999964221 3444432 222333 33344777778899999999998877
Q ss_pred Ee
Q 024846 186 LT 187 (261)
Q Consensus 186 vT 187 (261)
++
T Consensus 103 ~D 104 (286)
T PRK12738 103 ID 104 (286)
T ss_pred ec
Confidence 65
No 59
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=62.92 E-value=4.7 Score=37.19 Aligned_cols=84 Identities=23% Similarity=0.249 Sum_probs=54.6
Q ss_pred CceeEEEeeecCHH----HHHHHHHHHHHc---CCcEEEEeecCCCCCCchhHhhcCCCCC--Cc----------ccccc
Q 024846 154 AVRFYQLYVFKKRD----IAATLVQRAERN---GFKALVLTADTPRLGRREADIKNKMITP--PL----------KNLEG 214 (261)
Q Consensus 154 ~~~wfQLy~~~dr~----~~~~li~rAe~a---G~~AlvvTVD~p~~G~Rerd~r~~f~~P--~~----------~~l~~ 214 (261)
+..|+-|-+-.|.. ...+.+++|+.. |+..+-++.|.+...+|-.+..-....| ++ .+++.
T Consensus 90 ~~~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~dd~~~ar~l~~~G~~~vmPlg~pIGsg~Gi~~~~~I~~ 169 (248)
T cd04728 90 GTDWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFTVLPYCTDDPVLAKRLEDAGCAAVMPLGSPIGSGQGLLNPYNLRI 169 (248)
T ss_pred CCCeEEEEEecCccccccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHcCCCEeCCCCcCCCCCCCCCCHHHHHH
Confidence 45577776655543 346788888888 9988888999999888888875444444 11 11122
Q ss_pred ccc-cccc-cccccccCcccch-hhh
Q 024846 215 LLS-TKVS-SVRILKLMPRDHG-CFF 237 (261)
Q Consensus 215 ~~~-~~~~-~~~k~~m~~~d~~-~~~ 237 (261)
+.+ .+++ -...||-||+|+. |++
T Consensus 170 I~e~~~vpVI~egGI~tpeda~~Ame 195 (248)
T cd04728 170 IIERADVPVIVDAGIGTPSDAAQAME 195 (248)
T ss_pred HHHhCCCcEEEeCCCCCHHHHHHHHH
Confidence 222 1444 3356689999988 665
No 60
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=62.84 E-value=16 Score=34.08 Aligned_cols=69 Identities=19% Similarity=0.264 Sum_probs=45.8
Q ss_pred CCchhhHHHHHHHHhcCCceeecCCCC----CcHHHHH-------hhcCCceeEEEeeecCHHHHHHHHHHHHHcCCcEE
Q 024846 116 ANPEGEVATARAAASCNTIMVLSFTSS----SSIEEVA-------ASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKAL 184 (261)
Q Consensus 116 ~hp~gE~alArAA~~~Gi~~~lSs~ss----~sleeIa-------~~~~~~~wfQLy~~~dr~~~~~li~rAe~aG~~Al 184 (261)
.+.+-=.++.+||++.+.|.++..... .+++.++ +....+-.++ -|.....+.+.+|-++||..+
T Consensus 21 ~n~e~~~avi~AAe~~~sPvIi~~~~~~~~~~~~~~~~~~~~~~a~~~~VPV~lH----LDH~~~~~~i~~ai~~GftSV 96 (276)
T cd00947 21 NNLETLKAILEAAEETRSPVILQISEGAIKYAGLELLVAMVKAAAERASVPVALH----LDHGSSFELIKRAIRAGFSSV 96 (276)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEcCcchhhhCCHHHHHHHHHHHHHHCCCCEEEE----CCCCCCHHHHHHHHHhCCCEE
Confidence 344445899999999999999975422 3344432 2223333333 366666788899999999998
Q ss_pred EEee
Q 024846 185 VLTA 188 (261)
Q Consensus 185 vvTV 188 (261)
+++-
T Consensus 97 MiD~ 100 (276)
T cd00947 97 MIDG 100 (276)
T ss_pred EeCC
Confidence 8763
No 61
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=62.48 E-value=60 Score=27.61 Aligned_cols=88 Identities=15% Similarity=0.116 Sum_probs=60.7
Q ss_pred CcccCcceeeccccccccCCchhhHHHHHHHHhcCCceeecCCCCCcHHHHHhhc--C--CceeEEEeeecCHHHHHHHH
Q 024846 98 DYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAASC--N--AVRFYQLYVFKKRDIAATLV 173 (261)
Q Consensus 98 G~~ls~Pi~iAP~g~~~l~hp~gE~alArAA~~~Gi~~~lSs~ss~sleeIa~~~--~--~~~wfQLy~~~dr~~~~~li 173 (261)
|++.. |+++++|..+ |--|-.-++++-+..|.-.+.+..-+++ ||++.++ . ..--.=.+--.-.+...+++
T Consensus 10 g~rpr--vlvak~GlDg--Hd~gakvia~~l~d~GfeVi~~g~~~tp-~e~v~aA~~~dv~vIgvSsl~g~h~~l~~~lv 84 (143)
T COG2185 10 GARPR--VLVAKLGLDG--HDRGAKVIARALADAGFEVINLGLFQTP-EEAVRAAVEEDVDVIGVSSLDGGHLTLVPGLV 84 (143)
T ss_pred CCCce--EEEeccCccc--cccchHHHHHHHHhCCceEEecCCcCCH-HHHHHHHHhcCCCEEEEEeccchHHHHHHHHH
Confidence 44443 7899999554 8889999999999999998888766544 6665443 1 11111111123456779999
Q ss_pred HHHHHcCCcEEEEeecC
Q 024846 174 QRAERNGFKALVLTADT 190 (261)
Q Consensus 174 ~rAe~aG~~AlvvTVD~ 190 (261)
+..+++|...+.|-+=.
T Consensus 85 e~lre~G~~~i~v~~GG 101 (143)
T COG2185 85 EALREAGVEDILVVVGG 101 (143)
T ss_pred HHHHHhCCcceEEeecC
Confidence 99999999998855543
No 62
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=62.43 E-value=28 Score=34.84 Aligned_cols=69 Identities=19% Similarity=0.201 Sum_probs=51.0
Q ss_pred HhhccccccccccC-C-CCCCcceeeCCcccCcceeeccccccccCCchhhHHHHHHHHhcCCceeecCCCCCcHHHHHh
Q 024846 73 AFHRITFRPRILVD-V-SRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAA 150 (261)
Q Consensus 73 Af~ri~L~pRvL~d-v-~~~DtsttllG~~ls~Pi~iAP~g~~~l~hp~gE~alArAA~~~Gi~~~lSs~ss~sleeIa~ 150 (261)
.|+++.|.|..-.- . +++|++|. +..++..||+-|||--. -|..+|.+-++.|=..++-. +.++|+-++
T Consensus 13 tfddvll~p~~~~~~~~~~v~~~t~-~~~~l~~P~vsa~mdtv------Te~~MAi~~A~~GGigvIh~--n~~i~~qae 83 (475)
T TIGR01303 13 TYNDVFMVPSRSEVGSRFDVDLSTA-DGTGTTIPLVVANMTAV------AGRRMAETVARRGGIVILPQ--DLPIPAVKQ 83 (475)
T ss_pred CccceEEccCccCccCCCceeeccc-ccCccccceeeccchhh------HHHHHHHHHHHCCCEEEEeC--CCCHHHHHH
Confidence 38999999986532 2 36788887 66899999999997322 48888888888887777754 456766543
No 63
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=62.31 E-value=17 Score=34.06 Aligned_cols=67 Identities=15% Similarity=0.188 Sum_probs=42.9
Q ss_pred CchhhHHHHHHHHhcCCceeecCCCC----CcHHHHH-------hhcCCceeEEEeeecCHHHHHHHHHHHHHcCCcEEE
Q 024846 117 NPEGEVATARAAASCNTIMVLSFTSS----SSIEEVA-------ASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALV 185 (261)
Q Consensus 117 hp~gE~alArAA~~~Gi~~~lSs~ss----~sleeIa-------~~~~~~~wfQLy~~~dr~~~~~li~rAe~aG~~Alv 185 (261)
+.+-=.++.+||++.+.|.++..... .+++.+. +..+-+ +.+.-|.....+.+.+|-++||.-++
T Consensus 27 n~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~~~~a~~~~VP----ValHLDH~~~~e~i~~ai~~GftSVM 102 (284)
T PRK12737 27 NLETLQVVVETAAELRSPVILAGTPGTFSYAGTDYIVAIAEVAARKYNIP----LALHLDHHEDLDDIKKKVRAGIRSVM 102 (284)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEcCccHHhhCCHHHHHHHHHHHHHHCCCC----EEEECCCCCCHHHHHHHHHcCCCeEE
Confidence 44444889999999999999874321 2344332 222233 23334666667888999999998776
Q ss_pred Ee
Q 024846 186 LT 187 (261)
Q Consensus 186 vT 187 (261)
++
T Consensus 103 iD 104 (284)
T PRK12737 103 ID 104 (284)
T ss_pred ec
Confidence 65
No 64
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=61.94 E-value=56 Score=29.49 Aligned_cols=131 Identities=17% Similarity=0.177 Sum_probs=65.6
Q ss_pred hhhcCCccchhcHHHHHHHhhccccccccccCCC-----CCCc-ceeeCCcccCcceeeccccccccCCchhh-HHHHHH
Q 024846 55 DFYAGGAEDEHTLKENVEAFHRITFRPRILVDVS-----RIDL-STTILDYKISAPIIIAPTALHKLANPEGE-VATARA 127 (261)
Q Consensus 55 ~Y~~gGa~de~T~~~N~~Af~ri~L~pRvL~dv~-----~~Dt-sttllG~~ls~Pi~iAP~g~~~l~hp~gE-~alArA 127 (261)
.-++||.+.-.++..=.+.++=+.|..-+-.+-. .++. -+..-...+..|+..-++.+. .+.| ..+.+.
T Consensus 5 vl~SGGKDS~lAl~~~~~~~~V~~L~~~~~~~~~s~~~h~~~~~~~~~qA~algiPl~~~~~~~~----~e~~~~~l~~~ 80 (222)
T TIGR00289 5 VLYSGGKDSILALYKALEEHEVISLVGVFSENEESYMFHSPNLHLTDLVAEAVGIPLIKLYTSGE----EEKEVEDLAGQ 80 (222)
T ss_pred EEecCcHHHHHHHHHHHHcCeeEEEEEEcCCCCCccccccCCHHHHHHHHHHcCCCeEEEEcCCc----hhHHHHHHHHH
Confidence 3457888888777654443322222221110100 0111 011223334556555444332 2333 566677
Q ss_pred HHhcCCceeec-CCCC----CcHHHHHhhcCCceeEEEeeecCHHHHHHHHHHHHHcCCcEEEEeecCCCCC
Q 024846 128 AASCNTIMVLS-FTSS----SSIEEVAASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLG 194 (261)
Q Consensus 128 A~~~Gi~~~lS-s~ss----~sleeIa~~~~~~~wfQLy~~~dr~~~~~li~rAe~aG~~AlvvTVD~p~~G 194 (261)
.++.|+-.+++ ...+ .-+|.+++..+=...++| |.+|++. +++ --+.|++|+++.|++..++
T Consensus 81 l~~~gv~~vv~GdI~s~~qr~~~e~vc~~~gl~~~~PL-W~~d~~~---l~e-~i~~Gf~aiIv~v~~~gL~ 147 (222)
T TIGR00289 81 LGELDVEALCIGAIESNYQKSRIDKVCRELGLKSIAPL-WHADPEK---LMY-EVAEKFEVIIVSVSAMGLD 147 (222)
T ss_pred HHHcCCCEEEECccccHHHHHHHHHHHHHcCCEEeccc-cCCCHHH---HHH-HHHcCCeEEEEEEccCCCC
Confidence 77778665554 2222 345566666542222222 2345543 343 3479999999999998765
No 65
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=61.05 E-value=30 Score=30.69 Aligned_cols=67 Identities=16% Similarity=0.211 Sum_probs=39.2
Q ss_pred HHHHHHHhcCCceee-cCCCC----CcHHHHHhhcCCceeEEEeeecCHHHHHHHHHHHHHcCCcEEEEeecCCCCC
Q 024846 123 ATARAAASCNTIMVL-SFTSS----SSIEEVAASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLG 194 (261)
Q Consensus 123 alArAA~~~Gi~~~l-Ss~ss----~sleeIa~~~~~~~wfQLy~~~dr~~~~~li~rAe~aG~~AlvvTVD~p~~G 194 (261)
++.+++.+ |+-.++ |+..+ ..+|.++...+=... .|.|.++ ..++++.+.+.|++++++.|++..++
T Consensus 78 ~l~~~~~~-g~~~vv~G~i~sd~~~~~~e~v~~~~gl~~~---~PLw~~~-~~el~~~~~~~G~~~~i~~v~~~~l~ 149 (218)
T TIGR03679 78 ALKELKRE-GVEGIVTGAIASRYQKSRIERICEELGLKVF---APLWGRD-QEEYLRELVERGFRFIIVSVSAYGLD 149 (218)
T ss_pred HHHHHHHc-CCCEEEECCcccHhHHHHHHHHHHhCCCeEE---eehhcCC-HHHHHHHHHHCCCEEEEEEEecCCCC
Confidence 34444443 877444 44433 344555554431112 2223333 34688999999999999999987665
No 66
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=60.79 E-value=11 Score=35.16 Aligned_cols=68 Identities=21% Similarity=0.251 Sum_probs=44.7
Q ss_pred chhhHHHHHHHHhcCCceeecCCCC----CcHHHH-------HhhcCCceeEEEeeecCHHHHHHHHHHHHHcCCcEEEE
Q 024846 118 PEGEVATARAAASCNTIMVLSFTSS----SSIEEV-------AASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVL 186 (261)
Q Consensus 118 p~gE~alArAA~~~Gi~~~lSs~ss----~sleeI-------a~~~~~~~wfQLy~~~dr~~~~~li~rAe~aG~~Alvv 186 (261)
.+-=.++.+||++.+.|.++....+ .+++.+ ++....+-+++| |.....+.+.+|-++||.-+++
T Consensus 27 ~e~~~avi~AAe~~~sPvIlq~~~~~~~~~~~~~~~~~~~~~a~~~~vPValHL----DH~~~~e~i~~ai~~GftSVM~ 102 (287)
T PF01116_consen 27 LETARAVIEAAEELNSPVILQISPSEVKYMGLEYLAAMVKAAAEEASVPVALHL----DHGKDFEDIKRAIDAGFTSVMI 102 (287)
T ss_dssp HHHHHHHHHHHHHTTS-EEEEEEHHHHHHHHHHHHHHHHHHHHHHSTSEEEEEE----EEE-SHHHHHHHHHHTSSEEEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEcchhhhhhhhHHHHHHHHHHHHHHcCCCEEeec----ccCCCHHHHHHHHHhCcccccc
Confidence 3344899999999999999975321 223332 233344556666 6666688999999999999877
Q ss_pred eec
Q 024846 187 TAD 189 (261)
Q Consensus 187 TVD 189 (261)
+--
T Consensus 103 DgS 105 (287)
T PF01116_consen 103 DGS 105 (287)
T ss_dssp E-T
T ss_pred cCC
Confidence 643
No 67
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=60.13 E-value=61 Score=29.91 Aligned_cols=85 Identities=15% Similarity=-0.013 Sum_probs=52.0
Q ss_pred cceeeccccccccCCchhhHHHHHHHHhcC-Cce--eecC---CCCCcHHHHH-------hhcCC--ceeEEEeeecCHH
Q 024846 103 APIIIAPTALHKLANPEGEVATARAAASCN-TIM--VLSF---TSSSSIEEVA-------ASCNA--VRFYQLYVFKKRD 167 (261)
Q Consensus 103 ~Pi~iAP~g~~~l~hp~gE~alArAA~~~G-i~~--~lSs---~ss~sleeIa-------~~~~~--~~wfQLy~~~dr~ 167 (261)
.|.++.|+--.+-.+.++=..+.+-..+.| +-. +.|| ..+-+.||-. +...+ +-..++- .-+-+
T Consensus 5 ~~~~~TPf~~dg~iD~~~~~~~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~-~~~t~ 83 (290)
T TIGR00683 5 FSALLVSFNEDGTINEKGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVG-SVNLK 83 (290)
T ss_pred EeeeecCCCCCCCcCHHHHHHHHHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhCCCCcEEEecC-CCCHH
Confidence 356677765555456666677787777777 433 3443 3345566532 22222 2233332 23556
Q ss_pred HHHHHHHHHHHcCCcEEEEee
Q 024846 168 IAATLVQRAERNGFKALVLTA 188 (261)
Q Consensus 168 ~~~~li~rAe~aG~~AlvvTV 188 (261)
.+.++.+.|+++|+.++++.-
T Consensus 84 ~~i~la~~a~~~Gad~v~v~~ 104 (290)
T TIGR00683 84 EAVELGKYATELGYDCLSAVT 104 (290)
T ss_pred HHHHHHHHHHHhCCCEEEEeC
Confidence 778999999999999999944
No 68
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=59.03 E-value=33 Score=32.84 Aligned_cols=69 Identities=19% Similarity=0.123 Sum_probs=52.0
Q ss_pred chhhHHHHHHHHhcCCceeec---CCCCCcHHHHHhhcC--CceeEEEeeecCHHHHHHHHHHHHHcCCcEEEEeec
Q 024846 118 PEGEVATARAAASCNTIMVLS---FTSSSSIEEVAASCN--AVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTAD 189 (261)
Q Consensus 118 p~gE~alArAA~~~Gi~~~lS---s~ss~sleeIa~~~~--~~~wfQLy~~~dr~~~~~li~rAe~aG~~AlvvTVD 189 (261)
..|+.++|+||.++|+-++.+ |-+|.=+|.+++..+ +..|+| ..|.....+..-=|--+|++|+..|-+
T Consensus 7 ~~GNeAiA~ga~~ag~~~~a~YPiTPsTeI~e~la~~~~~~~~~~vq---~E~E~aA~~~a~GAs~aG~Ra~taTSg 80 (352)
T PRK07119 7 MKGNEAIAEAAIRAGCRCYFGYPITPQSEIPEYMSRRLPEVGGVFVQ---AESEVAAINMVYGAAATGKRVMTSSSS 80 (352)
T ss_pred ehHHHHHHHHHHHhCCCEEEEeCCCCchHHHHHHHHHHHHhCCEEEe---eCcHHHHHHHHHHHHhhCCCEEeecCc
Confidence 469999999999999998887 444444465655433 345666 467777788888889999999999933
No 69
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=58.39 E-value=21 Score=33.38 Aligned_cols=67 Identities=18% Similarity=0.216 Sum_probs=43.7
Q ss_pred CchhhHHHHHHHHhcCCceeecCCCC----CcHHHHH-------hhcCCceeEEEeeecCHHHHHHHHHHHHHcCCcEEE
Q 024846 117 NPEGEVATARAAASCNTIMVLSFTSS----SSIEEVA-------ASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALV 185 (261)
Q Consensus 117 hp~gE~alArAA~~~Gi~~~lSs~ss----~sleeIa-------~~~~~~~wfQLy~~~dr~~~~~li~rAe~aG~~Alv 185 (261)
+.+-=.++.+||++.+.|.++..... .+++.++ +...-+. .+.-|.....+.+.+|-++||.-++
T Consensus 27 n~e~~~avi~AAee~~sPvIlq~~~~~~~~~g~~~~~~~~~~~A~~~~VPV----alHLDH~~~~e~i~~ai~~GftSVM 102 (284)
T PRK12857 27 NMEIVQAIVAAAEAEKSPVIIQASQGAIKYAGIEYISAMVRTAAEKASVPV----ALHLDHGTDFEQVMKCIRNGFTSVM 102 (284)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEechhHhhhCCHHHHHHHHHHHHHHCCCCE----EEECCCCCCHHHHHHHHHcCCCeEE
Confidence 33344789999999999999875322 3444432 2222333 3344777777888999999998877
Q ss_pred Ee
Q 024846 186 LT 187 (261)
Q Consensus 186 vT 187 (261)
++
T Consensus 103 ~D 104 (284)
T PRK12857 103 ID 104 (284)
T ss_pred Ee
Confidence 66
No 70
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=57.82 E-value=69 Score=27.95 Aligned_cols=91 Identities=16% Similarity=0.190 Sum_probs=50.9
Q ss_pred eCCcccCcceeeccccccccCCchhh----HHHHHHHHhcCCceee-cCCCC----CcHHHHHhhcCCceeEEEeeecCH
Q 024846 96 ILDYKISAPIIIAPTALHKLANPEGE----VATARAAASCNTIMVL-SFTSS----SSIEEVAASCNAVRFYQLYVFKKR 166 (261)
Q Consensus 96 llG~~ls~Pi~iAP~g~~~l~hp~gE----~alArAA~~~Gi~~~l-Ss~ss----~sleeIa~~~~~~~wfQLy~~~dr 166 (261)
.....+..|+.+-.+... .++-. ..+-+.+++ |+..++ |+..+ .-+|.++...+=.. ++|.|.+
T Consensus 52 ~~A~~lgipl~~i~~~~~---~e~~~~~l~~~l~~~~~~-g~~~vv~G~i~sd~~~~~~e~~~~~~gl~~---~~PLW~~ 124 (194)
T cd01994 52 LQAEAMGIPLIRIEISGE---EEDEVEDLKELLRKLKEE-GVDAVVFGAILSEYQRTRVERVCERLGLEP---LAPLWGR 124 (194)
T ss_pred HHHHHcCCcEEEEeCCCC---chHHHHHHHHHHHHHHHc-CCCEEEECccccHHHHHHHHHHHHHcCCEE---EecccCC
Confidence 345556677776665331 22222 233333444 776443 44433 34556666554222 2233333
Q ss_pred HHHHHHHHHHHHcCCcEEEEeecCCCCC
Q 024846 167 DIAATLVQRAERNGFKALVLTADTPRLG 194 (261)
Q Consensus 167 ~~~~~li~rAe~aG~~AlvvTVD~p~~G 194 (261)
+ .+++++...+.|++++++.|++..++
T Consensus 125 ~-~~~ll~e~~~~g~~~~iv~v~~~~L~ 151 (194)
T cd01994 125 D-QEELLREMIEAGFKAIIIKVAAEGLD 151 (194)
T ss_pred C-HHHHHHHHHHcCCeEEEEEeccCCCC
Confidence 2 24688888899999999999998765
No 71
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=57.82 E-value=85 Score=29.51 Aligned_cols=39 Identities=23% Similarity=0.222 Sum_probs=25.3
Q ss_pred eeCCcccCcceeeccccccccCCchhhHHHHHHHHhcCCceeecCCC
Q 024846 95 TILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTS 141 (261)
Q Consensus 95 tllG~~ls~Pi~iAP~g~~~l~hp~gE~alArAA~~~Gi~~~lSs~s 141 (261)
++||. ..||+-+||++. . ...+|.|..++|-.-+++...
T Consensus 6 ~~lgi--~~PIiqapM~~i--s----~~~LaaAVs~aGglG~l~~~~ 44 (330)
T PF03060_consen 6 ELLGI--KYPIIQAPMGGI--S----TPELAAAVSNAGGLGFLGAGG 44 (330)
T ss_dssp HHHT---SSSEEE---TTT--S----SHHHHHHHHHTTSBEEEECTT
T ss_pred HHhCC--CcCEEcCCCCCC--C----hHHHHHHHHhCCCEeeccccc
Confidence 34443 569999999873 2 346788888899999998643
No 72
>TIGR03455 HisG_C-term ATP phosphoribosyltransferase, C-terminal domain. This domain corresponds to the C-terminal third of the HisG protein. It is absent in many lineages.
Probab=55.95 E-value=58 Score=25.72 Aligned_cols=53 Identities=9% Similarity=0.241 Sum_probs=39.6
Q ss_pred eeecCCCCCcHHHHHhhcCC-----------ceeEEEeeecCHHHHHHHHHHHHHcCCcEEEEe
Q 024846 135 MVLSFTSSSSIEEVAASCNA-----------VRFYQLYVFKKRDIAATLVQRAERNGFKALVLT 187 (261)
Q Consensus 135 ~~lSs~ss~sleeIa~~~~~-----------~~wfQLy~~~dr~~~~~li~rAe~aG~~AlvvT 187 (261)
++.=......++++.+..|| ..|+-+...-+++.+.+++.+.+++|++.|.++
T Consensus 31 ~v~~Nvp~~~l~~v~~ilPg~~~PTVs~l~~~~w~AV~~vv~~~~v~~~~~~Lk~~GA~~Ilv~ 94 (100)
T TIGR03455 31 LLMMNVPRDNLDEVRALLPGLEGPTVSPLADEGWVAVHAVVDEKVVNELIDKLKAAGARDILVL 94 (100)
T ss_pred EEEEeCChhhHHHHHHhcCCCCCCCcCcCCCCCeEEEEEEEcHHHHHHHHHHHHHcCCCeEEEe
Confidence 33334455677777765431 268888877789999999999999999998875
No 73
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=55.68 E-value=9.2 Score=37.15 Aligned_cols=40 Identities=23% Similarity=0.243 Sum_probs=32.0
Q ss_pred ccCcceeeccccccccCCchhhHHHHHHHHhcCCceeecCC
Q 024846 100 KISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFT 140 (261)
Q Consensus 100 ~ls~Pi~iAP~g~~~l~hp~gE~alArAA~~~Gi~~~lSs~ 140 (261)
++++||+++.|+.-.+ -.+.-.++|+||..+|+.+..|..
T Consensus 63 ~l~~p~~is~MS~GaL-S~~a~~Ala~ga~~~G~~~ntGEG 102 (368)
T PF01645_consen 63 ELSIPFMISAMSYGAL-SEEAKEALAKGANMAGTASNTGEG 102 (368)
T ss_dssp HHHTTEEEEEB-CTTC--HHHHHHHHHHHHHCT-EEEETTT
T ss_pred hheeeeecccCChhhc-CHHHHHHHHHHHHHhCceEecCCC
Confidence 3789999999988765 466789999999999999999864
No 74
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=55.01 E-value=1e+02 Score=28.09 Aligned_cols=84 Identities=15% Similarity=0.113 Sum_probs=47.0
Q ss_pred ceeeccccccccCCchhhHHHHHHHHhcCCceee--cCC---CCCcHHH-------HHhhcCC--ceeEEEeeecCHHHH
Q 024846 104 PIIIAPTALHKLANPEGEVATARAAASCNTIMVL--SFT---SSSSIEE-------VAASCNA--VRFYQLYVFKKRDIA 169 (261)
Q Consensus 104 Pi~iAP~g~~~l~hp~gE~alArAA~~~Gi~~~l--Ss~---ss~slee-------Ia~~~~~--~~wfQLy~~~dr~~~ 169 (261)
|.++.|+--.+-.+.++-...++-..+.|+...+ ||. .+-+.+| +.+..++ +.+.++ -..+-+.+
T Consensus 7 ~~~~TPf~~dg~id~~~~~~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv-~~~st~~~ 85 (289)
T PF00701_consen 7 PALITPFNADGSIDEDALKRLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIAGV-GANSTEEA 85 (289)
T ss_dssp EEE---BETTSSB-HHHHHHHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEE-ESSSHHHH
T ss_pred eeeeCCCCCCcCcCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEecC-cchhHHHH
Confidence 5566676444444555557788877788875433 332 2234444 2233332 233333 23367778
Q ss_pred HHHHHHHHHcCCcEEEEee
Q 024846 170 ATLVQRAERNGFKALVLTA 188 (261)
Q Consensus 170 ~~li~rAe~aG~~AlvvTV 188 (261)
.++.+.|+++|+.++++.-
T Consensus 86 i~~a~~a~~~Gad~v~v~~ 104 (289)
T PF00701_consen 86 IELARHAQDAGADAVLVIP 104 (289)
T ss_dssp HHHHHHHHHTT-SEEEEEE
T ss_pred HHHHHHHhhcCceEEEEec
Confidence 9999999999999999865
No 75
>PRK08227 autoinducer 2 aldolase; Validated
Probab=54.90 E-value=64 Score=29.94 Aligned_cols=99 Identities=12% Similarity=0.112 Sum_probs=54.7
Q ss_pred HHHHHHHHhcCCceeecCCCCCcHHHHHhhcCCceeEEEeeecCHHHHHHHHHHHHHcCCcEEEEeecCCCCCCchhHhh
Q 024846 122 VATARAAASCNTIMVLSFTSSSSIEEVAASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLGRREADIK 201 (261)
Q Consensus 122 ~alArAA~~~Gi~~~lSs~ss~sleeIa~~~~~~~wfQLy~~~dr~~~~~li~rAe~aG~~AlvvTVD~p~~G~Rerd~r 201 (261)
...+|.|.+.|.=++=-.+...++++|.++.|-+-.+.==+..+.+...++++.|-++|+..+++- |
T Consensus 161 a~aaRiaaELGADiVK~~y~~~~f~~vv~a~~vPVviaGG~k~~~~~~L~~v~~ai~aGa~Gv~~G-------------R 227 (264)
T PRK08227 161 SLATRIAAEMGAQIIKTYYVEEGFERITAGCPVPIVIAGGKKLPERDALEMCYQAIDEGASGVDMG-------------R 227 (264)
T ss_pred HHHHHHHHHHcCCEEecCCCHHHHHHHHHcCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCceeeec-------------h
Confidence 355677777775444333333578888886653311100011244556788888988999887764 4
Q ss_pred cCCCCCC-ccccccccccccccccccccCcccch-hhhh
Q 024846 202 NKMITPP-LKNLEGLLSTKVSSVRILKLMPRDHG-CFFK 238 (261)
Q Consensus 202 ~~f~~P~-~~~l~~~~~~~~~~~~k~~m~~~d~~-~~~~ 238 (261)
|=|.-+. .+.++ .+..+..+..|++|+. .+.+
T Consensus 228 NIfQ~~~p~~~~~-----al~~IVh~~~s~~eA~~~~~~ 261 (264)
T PRK08227 228 NIFQSEHPVAMIK-----AVHAVVHENETAKEAYELYLS 261 (264)
T ss_pred hhhccCCHHHHHH-----HHHHHHhCCCCHHHHHHHHHH
Confidence 5454441 11111 3345556667777775 4433
No 76
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal. The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D.
Probab=54.37 E-value=41 Score=30.21 Aligned_cols=89 Identities=19% Similarity=0.224 Sum_probs=45.4
Q ss_pred cccCcceeeccccccccCCchhhHHHHHHHHhcCCceeecC-CCC----CcHHHHHhhcCCceeEEEeeecCHHHHHHHH
Q 024846 99 YKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSF-TSS----SSIEEVAASCNAVRFYQLYVFKKRDIAATLV 173 (261)
Q Consensus 99 ~~ls~Pi~iAP~g~~~l~hp~gE~alArAA~~~Gi~~~lSs-~ss----~sleeIa~~~~~~~wfQLy~~~dr~~~~~li 173 (261)
.-+..|+...++.+. ..+-+..+.++.++.++-.++.- ..+ .-+|.+++..+=. -+.|.|.++ .++++
T Consensus 55 ~algipl~~~~~~g~---~~~~~~~l~~~l~~~~v~~vv~GdI~~~~~r~~~e~vc~~lGl~---~~~PLW~~d-~~~ll 127 (218)
T PF01902_consen 55 EALGIPLIEIPTSGD---EEDYVEDLKEALKELKVEAVVFGDIDSEYQRNWVERVCERLGLE---AVFPLWGRD-REELL 127 (218)
T ss_dssp HHHT--EEEEEE------CCCHHHHHHHHHCTC--SEEE--TTS-HHHHHHHHHHHHHCT-E---EE-TTTT---HHHHH
T ss_pred HHCCCCEEEEEccCc---cchhhHHHHHHHHHcCCCEEEECcCCcHHHHHHHHHHHHHcCCE---EEecccCCC-HHHHH
Confidence 335668888887543 22234677778888886665542 211 2345555554311 123334333 34677
Q ss_pred HHHHHcCCcEEEEeecCCCCC
Q 024846 174 QRAERNGFKALVLTADTPRLG 194 (261)
Q Consensus 174 ~rAe~aG~~AlvvTVD~p~~G 194 (261)
++.-+.|++++++.||+..++
T Consensus 128 ~e~i~~Gf~aiIv~V~~~~L~ 148 (218)
T PF01902_consen 128 REFIESGFEAIIVKVDADGLD 148 (218)
T ss_dssp HHHHHTT-EEEEEEEESTT--
T ss_pred HHHHHCCCeEEEEEEeccCCC
Confidence 777788999999999998763
No 77
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=54.25 E-value=84 Score=28.95 Aligned_cols=84 Identities=11% Similarity=0.027 Sum_probs=53.8
Q ss_pred cceeeccccccccCCchhhHHHHHHHHhcCCceee--cCC---CCCcHHHH-------HhhcC--CceeEEEeeecCHHH
Q 024846 103 APIIIAPTALHKLANPEGEVATARAAASCNTIMVL--SFT---SSSSIEEV-------AASCN--AVRFYQLYVFKKRDI 168 (261)
Q Consensus 103 ~Pi~iAP~g~~~l~hp~gE~alArAA~~~Gi~~~l--Ss~---ss~sleeI-------a~~~~--~~~wfQLy~~~dr~~ 168 (261)
.|.++.|+--.+-.+.++-..+++-..+.|+-.++ ||. .+-+.||- .+... .+.+.++- .+-+.
T Consensus 10 ~~a~vTPf~~dg~iD~~~l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~--~~t~~ 87 (296)
T TIGR03249 10 LSFPVTPFDADGSFDEAAYRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVG--GNTSD 87 (296)
T ss_pred EEeeeCCcCCCCCcCHHHHHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC--ccHHH
Confidence 46677787545555666768888888888865543 432 23455542 22222 23455553 35667
Q ss_pred HHHHHHHHHHcCCcEEEEee
Q 024846 169 AATLVQRAERNGFKALVLTA 188 (261)
Q Consensus 169 ~~~li~rAe~aG~~AlvvTV 188 (261)
+.++.+.|+++|+.++++.-
T Consensus 88 ai~~a~~a~~~Gadav~~~p 107 (296)
T TIGR03249 88 AIEIARLAEKAGADGYLLLP 107 (296)
T ss_pred HHHHHHHHHHhCCCEEEECC
Confidence 78899999999999998843
No 78
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=54.00 E-value=1.3e+02 Score=28.83 Aligned_cols=157 Identities=14% Similarity=0.124 Sum_probs=89.9
Q ss_pred hhhhhhhcCCccchhcHHHHHHHhhccccccccccCCCCCCcceeeCCcccCcceeeccccccccCC--chhhHHHHHHH
Q 024846 51 KMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLAN--PEGEVATARAA 128 (261)
Q Consensus 51 ~~~~~Y~~gGa~de~T~~~N~~Af~ri~L~pRvL~dv~~~DtsttllG~~ls~Pi~iAP~g~~~l~h--p~gE~alArAA 128 (261)
......+.++......++++...+....-+|-+. ..||... +|++...+.| ..-+....-.+
T Consensus 37 aGglG~ia~~~~~~e~l~~~i~~~~~~~~~p~~~----------~~f~~~~------~~v~~~~l~~~~~~~~~~~~~ii 100 (336)
T COG2070 37 AGGLGIIASGGLPAEQLRAEIRKIRALTDKPFVA----------NNFGSAP------APVNVNILVARRNAAEAGVDAII 100 (336)
T ss_pred cCCccccccccCCHHHHHHHHHHHHHhcCCcchh----------ccccccc------ccchhheecccccchHHhhhhHH
Confidence 4445567666666667788877777766666442 2333322 5666666655 33455666666
Q ss_pred HhcCCceeecCCCCCcHHHHHhhcC-CceeEEEeeecCHHHHHHHHHHHHHcCCcEEEEeecCCCCCCchhHhhcCCCCC
Q 024846 129 ASCNTIMVLSFTSSSSIEEVAASCN-AVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITP 207 (261)
Q Consensus 129 ~~~Gi~~~lSs~ss~sleeIa~~~~-~~~wfQLy~~~dr~~~~~li~rAe~aG~~AlvvTVD~p~~G~Rerd~r~~f~~P 207 (261)
..+|++.++.+....+-+.|..... +...+... .+....++++++|+.+||.-==- ..|.+-. ....+
T Consensus 101 ~~~~vpvv~~~~g~~~~~~i~~~~~~g~~v~~~v------~~~~~A~~~~~~G~d~vI~~g~e-AGGH~g~----~~~~~ 169 (336)
T COG2070 101 EGAGVPVVSTSFGAPPAEFVARLKAAGIKVIHSV------ITVREALKAERAGADAVIAQGAE-AGGHRGG----VDLEV 169 (336)
T ss_pred hcCCCCEEeccCCCCcHHHHHHHHHcCCeEEEEe------CCHHHHHHHHhCCCCEEEecCCc-CCCcCCC----CCCCc
Confidence 7779999999887545555554322 44444443 35677899999999887764321 2233322 01112
Q ss_pred -Ccccccccccc-c-cccc-cccccCcccch
Q 024846 208 -PLKNLEGLLST-K-VSSV-RILKLMPRDHG 234 (261)
Q Consensus 208 -~~~~l~~~~~~-~-~~~~-~k~~m~~~d~~ 234 (261)
+...+++..+. + +|-+ ..||.+.+++.
T Consensus 170 ~t~~Lv~ev~~~~~~iPViAAGGI~dg~~i~ 200 (336)
T COG2070 170 STFALVPEVVDAVDGIPVIAAGGIADGRGIA 200 (336)
T ss_pred cHHHHHHHHHHHhcCCCEEEecCccChHHHH
Confidence 33333444333 3 5644 55677777766
No 79
>TIGR03884 sel_bind_Methan selenium-binding protein. This model describes a homopentameric selenium-binding protein with a suggested role in selenium transport and delivery to selenophosphate synthase, the SelD protein. This protein family is closely related to pfam01906, but is shorter because of several deleted regions. It is restricted to the archaeal genus Methanococcus.
Probab=53.63 E-value=17 Score=27.57 Aligned_cols=27 Identities=15% Similarity=0.278 Sum_probs=21.2
Q ss_pred CH-HHHHHHHHHHHHcCCcEEE-EeecCC
Q 024846 165 KR-DIAATLVQRAERNGFKALV-LTADTP 191 (261)
Q Consensus 165 dr-~~~~~li~rAe~aG~~Alv-vTVD~p 191 (261)
|. +..++|.++|++.|+.||+ +.+|+.
T Consensus 26 d~d~Al~eM~e~A~~lGAnAVVGvr~d~s 54 (74)
T TIGR03884 26 NVDEIVENLREKVKAKGGMGLIAFRITCA 54 (74)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEEEEEcC
Confidence 54 4568999999999999864 677765
No 80
>PF05226 CHASE2: CHASE2 domain; InterPro: IPR007890 CHASE2 is an extracellular sensory domain, which is present in various classes of transmembrane receptors that are upstream of signal transduction pathways in bacteria. Specifically, CHASE2 domains are found in histidine kinases, adenylate cyclases, serine/threonine kinases and predicted diguanylate cyclases/phosphodiesterases. Environmental factors that are recognised by CHASE2 domains are not known at this time [].
Probab=53.45 E-value=17 Score=33.34 Aligned_cols=32 Identities=22% Similarity=0.095 Sum_probs=28.9
Q ss_pred eecCHHHHHHHHHHHHHcCCcEEEEeecCCCC
Q 024846 162 VFKKRDIAATLVQRAERNGFKALVLTADTPRL 193 (261)
Q Consensus 162 ~~~dr~~~~~li~rAe~aG~~AlvvTVD~p~~ 193 (261)
+|++|+...++|++..++|+++|++++.-.-.
T Consensus 59 ~Pw~R~~~A~ll~~L~~~ga~~I~~Di~f~~~ 90 (310)
T PF05226_consen 59 WPWPRSVYARLLDRLAAAGAKAIGFDILFDEP 90 (310)
T ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEEeeecCC
Confidence 57899999999999999999999999987555
No 81
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=53.25 E-value=75 Score=31.50 Aligned_cols=83 Identities=12% Similarity=0.051 Sum_probs=53.8
Q ss_pred eeCCcccCcceeecccc-ccccCCchhhHHHHHHHHhcCCceeecCCCCCcHHHHH-------hh-c-CCceeEEEee-e
Q 024846 95 TILDYKISAPIIIAPTA-LHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVA-------AS-C-NAVRFYQLYV-F 163 (261)
Q Consensus 95 tllG~~ls~Pi~iAP~g-~~~l~hp~gE~alArAA~~~Gi~~~lSs~ss~sleeIa-------~~-~-~~~~wfQLy~-~ 163 (261)
++||. ..||+.+||+ +. ....++.|..++|..-++++.. .++++|. +. . +.+.-+-|.. +
T Consensus 8 ~~lgi--ryPii~gpMa~Gi------ss~eLVaAvs~AGgLG~lgag~-l~~e~l~~~I~~ir~~lt~~~PfGVNL~~~~ 78 (418)
T cd04742 8 EDYGL--RYAYVAGAMARGI------ASAELVVAMGKAGMLGFFGAGG-LPLDEVEQAIERIQAALGNGEPYGVNLIHSP 78 (418)
T ss_pred HHhCC--CccEECCcccCCC------CCHHHHHHHHhCCCeeeecCCC-CCHHHHHHHHHHHHHhccCCCCeEEeeecCC
Confidence 44554 6799999997 33 2457888999999998888655 3455543 32 2 2344444544 3
Q ss_pred cCHHHHHHHHHHHHHcCCcEEEE
Q 024846 164 KKRDIAATLVQRAERNGFKALVL 186 (261)
Q Consensus 164 ~dr~~~~~li~rAe~aG~~Alvv 186 (261)
.+.+...++++...+.|++.+..
T Consensus 79 ~~~~~e~~~v~l~le~gV~~ve~ 101 (418)
T cd04742 79 DEPELEEGLVDLFLRHGVRVVEA 101 (418)
T ss_pred CCchhHHHHHHHHHHcCCCEEEe
Confidence 34444567888889999976543
No 82
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=53.03 E-value=89 Score=28.33 Aligned_cols=84 Identities=17% Similarity=0.065 Sum_probs=52.5
Q ss_pred cceeeccccccccCCchhhHHHHHHHHhcCCceee--cCC---CCCcHHHH-------HhhcCC--ceeEEEeeecCHHH
Q 024846 103 APIIIAPTALHKLANPEGEVATARAAASCNTIMVL--SFT---SSSSIEEV-------AASCNA--VRFYQLYVFKKRDI 168 (261)
Q Consensus 103 ~Pi~iAP~g~~~l~hp~gE~alArAA~~~Gi~~~l--Ss~---ss~sleeI-------a~~~~~--~~wfQLy~~~dr~~ 168 (261)
.|..+.|+.-.+-.+.++-...++-..+.|+-..+ ||. .+.+.+|- .+...+ +.+.++- ..+-+.
T Consensus 5 ~~~~~TPf~~dg~iD~~~~~~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~-~~~~~~ 83 (284)
T cd00950 5 ITALVTPFKDDGSVDFDALERLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTG-SNNTAE 83 (284)
T ss_pred eeeeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccC-CccHHH
Confidence 35667776555556666767888888888865443 332 23445442 222222 2333332 235667
Q ss_pred HHHHHHHHHHcCCcEEEEe
Q 024846 169 AATLVQRAERNGFKALVLT 187 (261)
Q Consensus 169 ~~~li~rAe~aG~~AlvvT 187 (261)
+.++.+.|+++|+.++++.
T Consensus 84 ~~~~a~~a~~~G~d~v~~~ 102 (284)
T cd00950 84 AIELTKRAEKAGADAALVV 102 (284)
T ss_pred HHHHHHHHHHcCCCEEEEc
Confidence 7899999999999999887
No 83
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=52.62 E-value=31 Score=32.77 Aligned_cols=70 Identities=14% Similarity=0.164 Sum_probs=46.2
Q ss_pred CCchhhHHHHHHHHhcCCceeecCCCC----CcHHHH-------HhhcCCceeEEEeeecCHHHHHHHHHHHHHcCCcEE
Q 024846 116 ANPEGEVATARAAASCNTIMVLSFTSS----SSIEEV-------AASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKAL 184 (261)
Q Consensus 116 ~hp~gE~alArAA~~~Gi~~~lSs~ss----~sleeI-------a~~~~~~~wfQLy~~~dr~~~~~li~rAe~aG~~Al 184 (261)
.+.+-=.++.+||++.+.|.++..... .+++.+ ++..+.+. +-+.-|.....+.+.+|-++||.-+
T Consensus 25 ~n~e~~~avi~AAe~~~sPvIlq~s~~~~~~~g~~~~~~~~~~~a~~~~~VP---ValHLDHg~~~e~i~~ai~~GftSV 101 (307)
T PRK05835 25 VNFEMLNAIFEAGNEENSPLFIQASEGAIKYMGIDMAVGMVKIMCERYPHIP---VALHLDHGTTFESCEKAVKAGFTSV 101 (307)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEcCccHHhhCChHHHHHHHHHHHHhcCCCe---EEEECCCCCCHHHHHHHHHcCCCEE
Confidence 344445899999999999999975332 233322 22222122 3445577777888999999999998
Q ss_pred EEee
Q 024846 185 VLTA 188 (261)
Q Consensus 185 vvTV 188 (261)
+++-
T Consensus 102 M~Dg 105 (307)
T PRK05835 102 MIDA 105 (307)
T ss_pred EEeC
Confidence 8763
No 84
>PRK06801 hypothetical protein; Provisional
Probab=52.12 E-value=31 Score=32.25 Aligned_cols=72 Identities=19% Similarity=0.199 Sum_probs=42.9
Q ss_pred CchhhHHHHHHHHhcCCceeecCCCC----CcHHHHH-------hhcCCceeEEEeeecCHHHHHHHHHHHHHcCCcEEE
Q 024846 117 NPEGEVATARAAASCNTIMVLSFTSS----SSIEEVA-------ASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALV 185 (261)
Q Consensus 117 hp~gE~alArAA~~~Gi~~~lSs~ss----~sleeIa-------~~~~~~~wfQLy~~~dr~~~~~li~rAe~aG~~Alv 185 (261)
+.+-=.++.+||++.+.|.++....+ .+++.+. +...-+ +.+.-|.....+.+++|-++||..+.
T Consensus 27 n~e~~~avi~AAe~~~~PvIl~~~~~~~~~~~~~~~~~~~~~~a~~~~vp----V~lHlDH~~~~e~i~~Ai~~GftSVm 102 (286)
T PRK06801 27 DSHFLRALFAAAKQERSPFIINIAEVHFKYISLESLVEAVKFEAARHDIP----VVLNLDHGLHFEAVVRALRLGFSSVM 102 (286)
T ss_pred CHHHHHHHHHHHHHHCCCEEEEeCcchhhcCCHHHHHHHHHHHHHHCCCC----EEEECCCCCCHHHHHHHHHhCCcEEE
Confidence 33344788888888888888864322 2333332 222222 34445666667778888888888877
Q ss_pred EeecCCCCC
Q 024846 186 LTADTPRLG 194 (261)
Q Consensus 186 vTVD~p~~G 194 (261)
+ |...+.
T Consensus 103 ~--D~S~l~ 109 (286)
T PRK06801 103 F--DGSTLE 109 (286)
T ss_pred E--cCCCCC
Confidence 7 444443
No 85
>PRK08185 hypothetical protein; Provisional
Probab=51.54 E-value=36 Score=31.84 Aligned_cols=67 Identities=16% Similarity=0.147 Sum_probs=39.4
Q ss_pred CchhhHHHHHHHHhcCCceeecCCCC----CcHH------HHHhhcCCceeEEEeeecCHHHHHHHHHHHHHcCCcEEEE
Q 024846 117 NPEGEVATARAAASCNTIMVLSFTSS----SSIE------EVAASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVL 186 (261)
Q Consensus 117 hp~gE~alArAA~~~Gi~~~lSs~ss----~sle------eIa~~~~~~~wfQLy~~~dr~~~~~li~rAe~aG~~Alvv 186 (261)
+.+-=.++.+||++.+.|.++..... .+.+ ++++...-+ +.+.-|.....+.+++|-++||..+++
T Consensus 22 n~e~~~avi~AAee~~sPvIl~~~~~~~~~~~~~~~~~~~~~a~~~~vP----V~lHLDHg~~~e~i~~ai~~Gf~SVM~ 97 (283)
T PRK08185 22 DSCFLRAVVEEAEANNAPAIIAIHPNELDFLGDNFFAYVRERAKRSPVP----FVIHLDHGATIEDVMRAIRCGFTSVMI 97 (283)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeCcchhhhccHHHHHHHHHHHHHCCCC----EEEECCCCCCHHHHHHHHHcCCCEEEE
Confidence 33344788888888888888874321 1222 112222222 333446666677788888888887655
Q ss_pred e
Q 024846 187 T 187 (261)
Q Consensus 187 T 187 (261)
+
T Consensus 98 D 98 (283)
T PRK08185 98 D 98 (283)
T ss_pred e
Confidence 4
No 86
>PF08029 HisG_C: HisG, C-terminal domain; InterPro: IPR013115 ATP phosphoribosyltransferase (2.4.2.17 from EC) is the enzyme that catalyzes the first step in the biosynthesis of histidine in bacteria, fungi and plants as shown below. It is a member of the larger phosphoribosyltransferase superfamily of enzymes which catalyse the condensation of 5-phospho-alpha-D-ribose 1-diphosphate with nitrogenous bases in the presence of divalent metal ions []. ATP + 5-phospho-alpha-D-ribose 1-diphosphate = 1-(5-phospho-D-ribosyl)-ATP + diphosphate Histidine biosynthesis is an energetically expensive process and ATP phosphoribosyltransferase activity is subject to control at several levels. Transcriptional regulation is based primarily on nutrient conditions and determines the amount of enzyme present in the cell, while feedback inihibition rapidly modulates activity in response to cellular conditions. The enzyme has been shown to be inhibited by 1-(5-phospho-D-ribosyl)-ATP, histidine, ppGpp (a signal associated with adverse environmental conditions) and ADP and AMP (which reflect the overall energy status of the cell). As this pathway of histidine biosynthesis is present only in prokayrotes, plants and fungi, this enzyme is a promising target for the development of novel antimicrobial compounds and herbicides. This entry represents the C-terminal portion of ATP phosphoribosyltransferase. The enzyme itself exists in equilibrium between an active dimeric form, an inactive hexameric form and higher aggregates [, ]. Interconversion between the various forms is largely reversible and is influenced by the binding of the natural substrates and inhibitors of the enzyme. This domain is not directly involved in catalysis but appears to be responsible for the formation of hexamers induced by the binding of inhibitors to the enzyme, thus regulating activity.; GO: 0000287 magnesium ion binding, 0003879 ATP phosphoribosyltransferase activity, 0000105 histidine biosynthetic process, 0005737 cytoplasm; PDB: 1Q1K_A 1H3D_A 2VD3_B 1NH7_A 1NH8_A.
Probab=51.53 E-value=18 Score=27.25 Aligned_cols=47 Identities=13% Similarity=0.150 Sum_probs=34.5
Q ss_pred CCCcHHHHHhhcC-----------CceeEEEeeecCHHHHHHHHHHHHHcCCcEEEEe
Q 024846 141 SSSSIEEVAASCN-----------AVRFYQLYVFKKRDIAATLVQRAERNGFKALVLT 187 (261)
Q Consensus 141 ss~sleeIa~~~~-----------~~~wfQLy~~~dr~~~~~li~rAe~aG~~AlvvT 187 (261)
...++|++.+..| +..|+=+...-+++.+.+++.+.+++|+..|+++
T Consensus 13 p~~~l~~v~~ilPg~~~PTVs~L~~~~w~AV~~vV~~~~~~~~~~~Lk~~GA~~Ilv~ 70 (75)
T PF08029_consen 13 PRESLEEVIKILPGLKSPTVSPLADEDWVAVHAVVPEKQVWDLMDKLKAAGASDILVL 70 (75)
T ss_dssp ECCCHHHHHHHS--SSS-EEEE-SSTTEEEEEEEEECCCHHHHHHHHHCTT-EEEEEE
T ss_pred CHHHHHHHHHhCCCCCCCceeecCCCCEEEEEEEecHHHHHHHHHHHHHcCCCEEEEE
Confidence 4467888877654 2357777766667788899999999999998874
No 87
>PRK00208 thiG thiazole synthase; Reviewed
Probab=51.28 E-value=8.8 Score=35.48 Aligned_cols=84 Identities=21% Similarity=0.236 Sum_probs=54.4
Q ss_pred CceeEEEeeecCHH----HHHHHHHHHHHc---CCcEEEEeecCCCCCCchhHhhcCCCCC--Cc----------ccccc
Q 024846 154 AVRFYQLYVFKKRD----IAATLVQRAERN---GFKALVLTADTPRLGRREADIKNKMITP--PL----------KNLEG 214 (261)
Q Consensus 154 ~~~wfQLy~~~dr~----~~~~li~rAe~a---G~~AlvvTVD~p~~G~Rerd~r~~f~~P--~~----------~~l~~ 214 (261)
+..|+-|-+-.|.. .+.+.+++|+.. |+..+-++.|.+...+|-.+..-.+..| ++ .+++.
T Consensus 90 ~~~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~vlpyc~~d~~~ak~l~~~G~~~vmPlg~pIGsg~gi~~~~~i~~ 169 (250)
T PRK00208 90 GTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLEEAGCAAVMPLGAPIGSGLGLLNPYNLRI 169 (250)
T ss_pred CCCeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHcCCCEeCCCCcCCCCCCCCCCHHHHHH
Confidence 45677776655543 346788888888 9988888889899888888875554444 11 11111
Q ss_pred ccc-cccc-cccccccCcccch-hhh
Q 024846 215 LLS-TKVS-SVRILKLMPRDHG-CFF 237 (261)
Q Consensus 215 ~~~-~~~~-~~~k~~m~~~d~~-~~~ 237 (261)
+.+ ..++ -...||-||+|+. |++
T Consensus 170 i~e~~~vpVIveaGI~tpeda~~Ame 195 (250)
T PRK00208 170 IIEQADVPVIVDAGIGTPSDAAQAME 195 (250)
T ss_pred HHHhcCCeEEEeCCCCCHHHHHHHHH
Confidence 222 1344 3356788999988 665
No 88
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=51.18 E-value=1.1e+02 Score=27.47 Aligned_cols=85 Identities=12% Similarity=0.083 Sum_probs=51.1
Q ss_pred cceeeccccccccCCchhhHHHHHHHHhcCCceee--cCC---CCCcHHHH-------HhhcCC--ceeEEEeeecCHHH
Q 024846 103 APIIIAPTALHKLANPEGEVATARAAASCNTIMVL--SFT---SSSSIEEV-------AASCNA--VRFYQLYVFKKRDI 168 (261)
Q Consensus 103 ~Pi~iAP~g~~~l~hp~gE~alArAA~~~Gi~~~l--Ss~---ss~sleeI-------a~~~~~--~~wfQLy~~~dr~~ 168 (261)
.|.++.|+--.+-.+.++-...++-..+.|+-.++ ||. .+-+.||- .+..++ +.+.++- ..+-..
T Consensus 2 ~~a~~TPf~~dg~iD~~~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~-~~~~~~ 80 (281)
T cd00408 2 IPALVTPFTADGEVDLDALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVG-ANSTRE 80 (281)
T ss_pred CCCeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecC-CccHHH
Confidence 35667777555555666667888888777765443 332 23445542 232222 2233332 224456
Q ss_pred HHHHHHHHHHcCCcEEEEee
Q 024846 169 AATLVQRAERNGFKALVLTA 188 (261)
Q Consensus 169 ~~~li~rAe~aG~~AlvvTV 188 (261)
+.++.+.|+++|+.++++.-
T Consensus 81 ~i~~a~~a~~~Gad~v~v~p 100 (281)
T cd00408 81 AIELARHAEEAGADGVLVVP 100 (281)
T ss_pred HHHHHHHHHHcCCCEEEECC
Confidence 78889999999999999843
No 89
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=51.10 E-value=32 Score=32.20 Aligned_cols=69 Identities=17% Similarity=0.270 Sum_probs=45.9
Q ss_pred CchhhHHHHHHHHhcCCceeecCCCC-----CcHHHHHhh-------cC-CceeEEEeeecCHHHHHHHHHHHHHcCCcE
Q 024846 117 NPEGEVATARAAASCNTIMVLSFTSS-----SSIEEVAAS-------CN-AVRFYQLYVFKKRDIAATLVQRAERNGFKA 183 (261)
Q Consensus 117 hp~gE~alArAA~~~Gi~~~lSs~ss-----~sleeIa~~-------~~-~~~wfQLy~~~dr~~~~~li~rAe~aG~~A 183 (261)
+.+-=.++.+||++.+.|.++..... .+++.+... .+ .+ .+.+.-|.....+.+.+|-++||.-
T Consensus 27 n~e~~~avi~AAee~~sPvIlq~~~~~~~~~~g~~~~~~~~~~~a~~~~~~V---PV~lHLDHg~~~e~i~~ai~~GftS 103 (288)
T TIGR00167 27 NLETINAVLEAAAEEKSPVIIQFSNGAAKYIAGLGAISAMVKAMSEAYPYGV---PVALHLDHGASEEDCAQAVKAGFSS 103 (288)
T ss_pred CHHHHHHHHHHHHHHCCCEEEECCcchhhccCCHHHHHHHHHHHHHhccCCC---cEEEECCCCCCHHHHHHHHHcCCCE
Confidence 44445799999999999999975322 235544322 21 22 2344457777788899999999999
Q ss_pred EEEee
Q 024846 184 LVLTA 188 (261)
Q Consensus 184 lvvTV 188 (261)
++++-
T Consensus 104 VMiDg 108 (288)
T TIGR00167 104 VMIDG 108 (288)
T ss_pred EEecC
Confidence 87763
No 90
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=50.85 E-value=33 Score=32.17 Aligned_cols=66 Identities=12% Similarity=0.168 Sum_probs=42.0
Q ss_pred chhhHHHHHHHHhcCCceeecCCCC----CcHHHHHh-------hcCCceeEEEeeecCHHHHHHHHHHHHHcCCcEEEE
Q 024846 118 PEGEVATARAAASCNTIMVLSFTSS----SSIEEVAA-------SCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVL 186 (261)
Q Consensus 118 p~gE~alArAA~~~Gi~~~lSs~ss----~sleeIa~-------~~~~~~wfQLy~~~dr~~~~~li~rAe~aG~~Alvv 186 (261)
.+-=.++.+||++.+.|.++..... .+++.+.. ...-+ +.+.-|.....+.+++|-++||..+++
T Consensus 28 ~e~~~avi~AAe~~~sPvIl~~~~~~~~~~g~~~~~~~~~~~A~~~~vP----V~lHLDH~~~~e~i~~Ai~~GftSVM~ 103 (283)
T PRK07998 28 LETTISILNAIERSGLPNFIQIAPTNAQLSGYDYIYEIVKRHADKMDVP----VSLHLDHGKTFEDVKQAVRAGFTSVMI 103 (283)
T ss_pred HHHHHHHHHHHHHhCCCEEEECcHhHHhhCCHHHHHHHHHHHHHHCCCC----EEEECcCCCCHHHHHHHHHcCCCEEEE
Confidence 3334788899999999988875321 23333322 22222 333446776778888888899988888
Q ss_pred e
Q 024846 187 T 187 (261)
Q Consensus 187 T 187 (261)
+
T Consensus 104 D 104 (283)
T PRK07998 104 D 104 (283)
T ss_pred e
Confidence 3
No 91
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=50.75 E-value=1.3e+02 Score=28.95 Aligned_cols=97 Identities=19% Similarity=0.178 Sum_probs=55.6
Q ss_pred eCCcccCcceeecccccc-ccCCchhhHHHHHHHHhcCCcee-----ecCCCCCcHHHHH--------hhc---CCceeE
Q 024846 96 ILDYKISAPIIIAPTALH-KLANPEGEVATARAAASCNTIMV-----LSFTSSSSIEEVA--------ASC---NAVRFY 158 (261)
Q Consensus 96 llG~~ls~Pi~iAP~g~~-~l~hp~gE~alArAA~~~Gi~~~-----lSs~ss~sleeIa--------~~~---~~~~wf 158 (261)
++|.. .-|++.+|+--. ++ .++.-..+++.....|+-.+ ++.+...+.||-. ++. +....+
T Consensus 124 ~~gv~-~rPli~Ti~kp~~gl-d~~~la~~~~~l~~gGvD~Ikdde~~ge~~~~~~eER~~~v~~av~~a~~~TG~~~~y 201 (367)
T cd08205 124 LLGVH-DRPLLGTIIKPSIGL-SPEELAELAYELALGGIDLIKDDELLADQPYAPFEERVRACMEAVRRANEETGRKTLY 201 (367)
T ss_pred HhCCC-CCCeeeeeeCCCCCC-CHHHHHHHHHHHHhcCCCeeeccccccCcccCCHHHHHHHHHHHHHHHHHhhCCcceE
Confidence 44533 678888875322 33 34444566777777786654 3344556666521 111 233322
Q ss_pred EEeeecCHHHHHHHHHHHHHcCCcEEEEeecCCCCC
Q 024846 159 QLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLG 194 (261)
Q Consensus 159 QLy~~~dr~~~~~li~rAe~aG~~AlvvTVD~p~~G 194 (261)
-.-.-.+.+.+.++.+.|+++|+.+++|..-.....
T Consensus 202 ~~nit~~~~e~i~~a~~a~~~Gad~vmv~~~~~g~~ 237 (367)
T cd08205 202 APNITGDPDELRRRADRAVEAGANALLINPNLVGLD 237 (367)
T ss_pred EEEcCCCHHHHHHHHHHHHHcCCCEEEEeccccccc
Confidence 222334556677777888889999988777655443
No 92
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=49.89 E-value=61 Score=31.59 Aligned_cols=66 Identities=21% Similarity=0.234 Sum_probs=46.2
Q ss_pred chhhHHHHHHHHhcCCceeec---CCCCCcHHHHHhhcC----CceeEEEeeecCHHHHHHHHHHHHHcCCcEEEE
Q 024846 118 PEGEVATARAAASCNTIMVLS---FTSSSSIEEVAASCN----AVRFYQLYVFKKRDIAATLVQRAERNGFKALVL 186 (261)
Q Consensus 118 p~gE~alArAA~~~Gi~~~lS---s~ss~sleeIa~~~~----~~~wfQLy~~~dr~~~~~li~rAe~aG~~Alvv 186 (261)
..|+.++|.||..+|+-+..+ |-+|.=+|.+++..+ +..|.|. .|.-......-=|-.+|++++.-
T Consensus 6 l~GNeAiA~ga~~ag~~~~a~YPITPsTei~e~la~~~~~G~~~~~~~~~---E~E~aA~~~aiGAs~aGaRa~Ta 78 (390)
T PRK08366 6 VSGNYAAAYAALHARVQVVAAYPITPQTSIIEKIAEFIANGEADIQYVPV---ESEHSAMAACIGASAAGARAFTA 78 (390)
T ss_pred eeHHHHHHHHHHHhCCCEEEEECCCChhHHHHHHHHHhhCCCCCeEEEEe---CCHHHHHHHHHHHHhhCCCeEee
Confidence 368999999999999999887 445444566665543 4556664 56666677777777778777543
No 93
>PRK11081 tRNA guanosine-2'-O-methyltransferase; Provisional
Probab=49.57 E-value=63 Score=29.28 Aligned_cols=74 Identities=14% Similarity=0.192 Sum_probs=48.3
Q ss_pred cccCCchhhHHHHHHHHhcCCceeecCCCCCcHHHHHh-hcCCceeEEEeeecCHHHHHHHHHHHHHcCCcEEEEeec
Q 024846 113 HKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAA-SCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTAD 189 (261)
Q Consensus 113 ~~l~hp~gE~alArAA~~~Gi~~~lSs~ss~sleeIa~-~~~~~~wfQLy~~~dr~~~~~li~rAe~aG~~AlvvTVD 189 (261)
.+...|..=-++.|.|.+.|+.-+...........+.. +.+...|..++...|- .+.++..++.|+.-++.+..
T Consensus 25 d~V~~p~NlGAIiRta~AfGv~~V~~v~~~~~~~~~~~~s~Ga~~wv~i~~~~~~---~~~i~~lk~~g~~i~at~~~ 99 (229)
T PRK11081 25 EQVHKPHNVSAIIRTADAVGVHEVHAVWPGSRMRTMGSTAAGSNSWVQVKTHRTI---GDAVAHLKGQGMQILATHLS 99 (229)
T ss_pred eCCCCcchHHHHHHHHHHhCCCeEEEecCCCccchhhhhcCCchheEEEEEeCCH---HHHHHHHHhCCCEEEEEeCC
Confidence 44445544579999999999976633322333333333 3356789988876654 45667777889988887754
No 94
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=49.23 E-value=1.2e+02 Score=27.65 Aligned_cols=85 Identities=15% Similarity=0.039 Sum_probs=50.7
Q ss_pred cceeeccccccccCCchhhHHHHHHHHhcCCceee--cCC---CCCcHHHH-------HhhcCC--ceeEEEeeecCHHH
Q 024846 103 APIIIAPTALHKLANPEGEVATARAAASCNTIMVL--SFT---SSSSIEEV-------AASCNA--VRFYQLYVFKKRDI 168 (261)
Q Consensus 103 ~Pi~iAP~g~~~l~hp~gE~alArAA~~~Gi~~~l--Ss~---ss~sleeI-------a~~~~~--~~wfQLy~~~dr~~ 168 (261)
.|.++.|+--.+-.+.++-..+++-..+.|+-.++ ||. .+-+.||- .+...+ +-+.++- ..+-+.
T Consensus 3 ~~a~~TPf~~~g~iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~-~~s~~~ 81 (285)
T TIGR00674 3 ITALITPFKEDGSVDFAALEKLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTG-SNATEE 81 (285)
T ss_pred cCceeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCC-CccHHH
Confidence 36667786555555666667777777777765443 332 22344442 222222 3344432 224556
Q ss_pred HHHHHHHHHHcCCcEEEEee
Q 024846 169 AATLVQRAERNGFKALVLTA 188 (261)
Q Consensus 169 ~~~li~rAe~aG~~AlvvTV 188 (261)
+.++.+.|+++|+.++++.-
T Consensus 82 ~i~~a~~a~~~Gad~v~v~p 101 (285)
T TIGR00674 82 AISLTKFAEDVGADGFLVVT 101 (285)
T ss_pred HHHHHHHHHHcCCCEEEEcC
Confidence 78889999999999999875
No 95
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=48.81 E-value=1.1e+02 Score=28.78 Aligned_cols=83 Identities=12% Similarity=0.058 Sum_probs=53.4
Q ss_pred ceeeccccccccCCchhhHHHHHHHHhcCC-ceeecCCCC------CcHHHHHhhcC--CceeEEEeeecCHHHHHHHHH
Q 024846 104 PIIIAPTALHKLANPEGEVATARAAASCNT-IMVLSFTSS------SSIEEVAASCN--AVRFYQLYVFKKRDIAATLVQ 174 (261)
Q Consensus 104 Pi~iAP~g~~~l~hp~gE~alArAA~~~Gi-~~~lSs~ss------~sleeIa~~~~--~~~wfQLy~~~dr~~~~~li~ 174 (261)
|+++|||++.. +...=+.|+..|. -.+.+-+-+ ....+.....+ .+..+||. -.|.+...+..+
T Consensus 2 ~~~lAPM~g~T------d~~fR~l~~~~g~~~~~~TEMv~a~~l~~~~~~~~l~~~~~e~p~~vQl~-g~~p~~~~~aA~ 74 (318)
T TIGR00742 2 RFSVAPMLDWT------DRHFRYFLRLLSKHTLLYTEMITAKAIIHGDKKDILKFSPEESPVALQLG-GSDPNDLAKCAK 74 (318)
T ss_pred CEEEECCCCCc------CHHHHHHHHHhCCCCEEEeCCEEEhhhhccCHHHHcccCCCCCcEEEEEc-cCCHHHHHHHHH
Confidence 78999987654 4445555666775 343332211 11122222222 45678987 557777888889
Q ss_pred HHHHcCCcEEEEeecCCCC
Q 024846 175 RAERNGFKALVLTADTPRL 193 (261)
Q Consensus 175 rAe~aG~~AlvvTVD~p~~ 193 (261)
++++.|+.+|=|..-+|..
T Consensus 75 ~~~~~g~d~IDlN~GCP~~ 93 (318)
T TIGR00742 75 IAEKRGYDEINLNVGCPSD 93 (318)
T ss_pred HHHhCCCCEEEEECCCCHH
Confidence 9999999999998888864
No 96
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=48.73 E-value=1.5e+02 Score=27.41 Aligned_cols=85 Identities=14% Similarity=0.003 Sum_probs=52.1
Q ss_pred cceeeccccccccCCchhhHHHHHHHHhcCCcee--ecC---CCCCcHHHHH-------hhcCC--ceeEEEeeecCHHH
Q 024846 103 APIIIAPTALHKLANPEGEVATARAAASCNTIMV--LSF---TSSSSIEEVA-------ASCNA--VRFYQLYVFKKRDI 168 (261)
Q Consensus 103 ~Pi~iAP~g~~~l~hp~gE~alArAA~~~Gi~~~--lSs---~ss~sleeIa-------~~~~~--~~wfQLy~~~dr~~ 168 (261)
.|.++.|+--.+-.+.++=..+++-..+.|+-.+ .|| ..+-+.||-. +...+ +-+.++- ..+-..
T Consensus 5 ~~a~~TPf~~dg~iD~~~l~~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~-~~~t~~ 83 (294)
T TIGR02313 5 IAPLITPFKRNGDIDEEALRELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTG-ALNHDE 83 (294)
T ss_pred eeeeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECC-cchHHH
Confidence 4777888755555566666777777777786543 333 3345555522 22222 2223322 234556
Q ss_pred HHHHHHHHHHcCCcEEEEee
Q 024846 169 AATLVQRAERNGFKALVLTA 188 (261)
Q Consensus 169 ~~~li~rAe~aG~~AlvvTV 188 (261)
+.++.+.|+++|+.++++.-
T Consensus 84 ai~~a~~A~~~Gad~v~v~p 103 (294)
T TIGR02313 84 TLELTKFAEEAGADAAMVIV 103 (294)
T ss_pred HHHHHHHHHHcCCCEEEEcC
Confidence 78889999999999998875
No 97
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=48.43 E-value=23 Score=24.93 Aligned_cols=27 Identities=33% Similarity=0.493 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHcCCcEEEEeecCCCCC
Q 024846 168 IAATLVQRAERNGFKALVLTADTPRLG 194 (261)
Q Consensus 168 ~~~~li~rAe~aG~~AlvvTVD~p~~G 194 (261)
..++++++|++.|.+++++|==....|
T Consensus 16 ~~~~~~~~a~~~g~~~v~iTDh~~~~~ 42 (67)
T smart00481 16 SPEELVKRAKELGLKAIAITDHGNLFG 42 (67)
T ss_pred CHHHHHHHHHHcCCCEEEEeeCCcccC
Confidence 367899999999999999985443333
No 98
>PLN02417 dihydrodipicolinate synthase
Probab=48.35 E-value=1.2e+02 Score=27.67 Aligned_cols=84 Identities=10% Similarity=-0.070 Sum_probs=49.0
Q ss_pred ceeeccccccccCCchhhHHHHHHHHhcCCceee--cC---CCCCcHHHH-------HhhcCC--ceeEEEeeecCHHHH
Q 024846 104 PIIIAPTALHKLANPEGEVATARAAASCNTIMVL--SF---TSSSSIEEV-------AASCNA--VRFYQLYVFKKRDIA 169 (261)
Q Consensus 104 Pi~iAP~g~~~l~hp~gE~alArAA~~~Gi~~~l--Ss---~ss~sleeI-------a~~~~~--~~wfQLy~~~dr~~~ 169 (261)
|-++.|+.-.+-.+.++=..+++-..+.|+..++ || ..+.+.||- .+..++ +-..++- ..+-..+
T Consensus 7 ~a~~TPf~~~g~iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~-~~~t~~~ 85 (280)
T PLN02417 7 TAIKTPYLPDGRFDLEAYDSLVNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNTG-SNSTREA 85 (280)
T ss_pred eeeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhCCCCcEEEECC-CccHHHH
Confidence 5556676544445555657777777777766543 33 223455542 222232 2222221 2245667
Q ss_pred HHHHHHHHHcCCcEEEEee
Q 024846 170 ATLVQRAERNGFKALVLTA 188 (261)
Q Consensus 170 ~~li~rAe~aG~~AlvvTV 188 (261)
.++.+.|+++|+.++++.-
T Consensus 86 i~~a~~a~~~Gadav~~~~ 104 (280)
T PLN02417 86 IHATEQGFAVGMHAALHIN 104 (280)
T ss_pred HHHHHHHHHcCCCEEEEcC
Confidence 8889999999999988854
No 99
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed
Probab=48.16 E-value=61 Score=31.40 Aligned_cols=66 Identities=20% Similarity=0.225 Sum_probs=48.1
Q ss_pred hhhHHHHHHHHhcCCceeec---CCCCCcHHHHHhhcC--CceeEEEeeecCHHHHHHHHHHHHHcCCcEEEEe
Q 024846 119 EGEVATARAAASCNTIMVLS---FTSSSSIEEVAASCN--AVRFYQLYVFKKRDIAATLVQRAERNGFKALVLT 187 (261)
Q Consensus 119 ~gE~alArAA~~~Gi~~~lS---s~ss~sleeIa~~~~--~~~wfQLy~~~dr~~~~~li~rAe~aG~~AlvvT 187 (261)
.|+.++|+||.++|.-+..+ |-+|.=+|.+++..+ +..++|. .|.-......-=|--+|++|+.-|
T Consensus 7 ~GNeAiA~ga~~ag~~~~a~YPITPsTeI~e~la~~~~~~g~~~vq~---E~E~aA~~~a~GAs~aG~Ra~taT 77 (375)
T PRK09627 7 TGNELVAKAAIECGCRFFGGYPITPSSEIAHEMSVLLPKCGGTFIQM---EDEISGISVALGASMSGVKSMTAS 77 (375)
T ss_pred chHHHHHHHHHHhCCCEEEEeCCCChhHHHHHHHHHHHHcCCEEEEc---CCHHHHHHHHHHHHhhCCCEEeec
Confidence 68999999999999999887 444444465665543 3444443 566666777778888999987766
No 100
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=48.08 E-value=39 Score=31.47 Aligned_cols=82 Identities=13% Similarity=0.170 Sum_probs=43.5
Q ss_pred ccCcceeeccccccccCCchhh---HHHHHHHHhcCCceeecCCCCCcHHHHHhhc-CCceeEEEeee-----cCHHHHH
Q 024846 100 KISAPIIIAPTALHKLANPEGE---VATARAAASCNTIMVLSFTSSSSIEEVAASC-NAVRFYQLYVF-----KKRDIAA 170 (261)
Q Consensus 100 ~ls~Pi~iAP~g~~~l~hp~gE---~alArAA~~~Gi~~~lSs~ss~sleeIa~~~-~~~~wfQLy~~-----~dr~~~~ 170 (261)
+...||+|.=.-.+ +-+...+ ..+...|+++.+|.++---=..+++.+..+. .|..|+|+--. .+-+.++
T Consensus 40 ~~~~Pvii~~~~~~-~~~~~~~~~~~~~~~~a~~~~vpv~lHlDH~~~~e~i~~Al~~G~tsVm~d~s~~~~~eni~~t~ 118 (281)
T PRK06806 40 ELNSPIILQIAEVR-LNHSPLHLIGPLMVAAAKQAKVPVAVHFDHGMTFEKIKEALEIGFTSVMFDGSHLPLEENIQKTK 118 (281)
T ss_pred HhCCCEEEEcCcch-hccCChHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHH
Confidence 34567776433222 1222233 2344566667777777533234666666554 36667776421 1223446
Q ss_pred HHHHHHHHcCCc
Q 024846 171 TLVQRAERNGFK 182 (261)
Q Consensus 171 ~li~rAe~aG~~ 182 (261)
++.+.|.+.|+.
T Consensus 119 ~v~~~a~~~gv~ 130 (281)
T PRK06806 119 EIVELAKQYGAT 130 (281)
T ss_pred HHHHHHHHcCCe
Confidence 667777777653
No 101
>PLN02826 dihydroorotate dehydrogenase
Probab=47.69 E-value=44 Score=32.89 Aligned_cols=46 Identities=22% Similarity=0.181 Sum_probs=32.1
Q ss_pred cchhcHHHHHHHhhccccccccccCCCCCCcceeeCCcccCcceeecc
Q 024846 62 EDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAP 109 (261)
Q Consensus 62 ~de~T~~~N~~Af~ri~L~pRvL~dv~~~DtsttllG~~ls~Pi~iAP 109 (261)
+-|...+--..+++.. +.|+.. ....++++++++|.++.-||++|.
T Consensus 46 dpE~aH~~~~~~l~~~-~~~~~~-~~~~~~L~~~~~Gl~f~NPvglAA 91 (409)
T PLN02826 46 DPETAHSLAISAAARG-LVPREK-RPDPSVLGVEVWGRTFSNPIGLAA 91 (409)
T ss_pred CHHHHHHHHHHHHHhh-cccccc-cCCCCCcceEECCEECCCCCEECc
Confidence 5566666666666643 344322 245678999999999999999976
No 102
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=45.48 E-value=29 Score=30.01 Aligned_cols=33 Identities=21% Similarity=0.257 Sum_probs=27.3
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEeecCCCCCCch
Q 024846 165 KRDIAATLVQRAERNGFKALVLTADTPRLGRRE 197 (261)
Q Consensus 165 dr~~~~~li~rAe~aG~~AlvvTVD~p~~G~Re 197 (261)
..+.+.+.+++|++.++++|+|.+|+|+.--..
T Consensus 14 ~~~~l~~~l~~A~~~~~~~i~l~inSPGG~v~~ 46 (172)
T cd07015 14 TYDQFDRYITIAEQDNAEAIIIELDTPGGRADA 46 (172)
T ss_pred HHHHHHHHHHHHhcCCCCeEEEEEECCCCCHHH
Confidence 345678889999999999999999999965554
No 103
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=45.16 E-value=1.6e+02 Score=28.45 Aligned_cols=118 Identities=14% Similarity=0.130 Sum_probs=66.7
Q ss_pred hhccccccccccCCCCCCcce----eeCCcccCcceeeccccccccCCchhhHHHHHHHHhcCCcee-----ecCCCCCc
Q 024846 74 FHRITFRPRILVDVSRIDLST----TILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMV-----LSFTSSSS 144 (261)
Q Consensus 74 f~ri~L~pRvL~dv~~~Dtst----tllG~~ls~Pi~iAP~g~~~l~hp~gE~alArAA~~~Gi~~~-----lSs~ss~s 144 (261)
+.+++|-|..+.....|...+ +++|.. .-|++.+-+=-.++ .++.=..++..+...|+-++ ++++...+
T Consensus 94 L~D~~~p~~~~~~f~GP~~Gi~g~R~~lgv~-~rPl~~tiiKP~GL-~~~~~a~~~~~~~~gGvD~IKdDe~l~~~~~~p 171 (364)
T cd08210 94 LVDFELPPSLLRRFPGPRFGIAGLRALLGIP-ERPLLCSALKPQGL-SAAELAELAYAFALGGIDIIKDDHGLADQPFAP 171 (364)
T ss_pred EEEecCCHHHHhcCCCCCCChHHHHHHhCCC-CCceEEEEeccccC-CHHHHHHHHHHHHhcCCCeeecCccccCccCCC
Confidence 445556666666555554332 344533 55655443211244 34344566777777897776 66677777
Q ss_pred HHHHH--------hhc---CCceeEEEeeecCHHHHHHHHHHHHHcCCcEEEEeecCCCC
Q 024846 145 IEEVA--------ASC---NAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRL 193 (261)
Q Consensus 145 leeIa--------~~~---~~~~wfQLy~~~dr~~~~~li~rAe~aG~~AlvvTVD~p~~ 193 (261)
+||-. ++. ++...+=.-.-.+.+.+.+..++|+++|+.+++|..-+.++
T Consensus 172 ~~eRv~~v~~av~~a~~eTG~~~~y~~Nita~~~em~~ra~~a~~~Ga~~vMv~~~~~G~ 231 (364)
T cd08210 172 FEERVKACQEAVAEANAETGGRTLYAPNVTGPPTQLLERARFAKEAGAGGVLIAPGLTGL 231 (364)
T ss_pred HHHHHHHHHHHHHHHHhhcCCcceEEEecCCCHHHHHHHHHHHHHcCCCEEEeecccchH
Confidence 77632 111 23222111123456667777888889999998887776553
No 104
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=44.83 E-value=47 Score=32.16 Aligned_cols=69 Identities=16% Similarity=0.208 Sum_probs=46.0
Q ss_pred CchhhHHHHHHHHhcCCceeecCCCC----CcHHHHH-------hhcCCceeEEEeeecCHHHHHHHHHHHHHcCCcEEE
Q 024846 117 NPEGEVATARAAASCNTIMVLSFTSS----SSIEEVA-------ASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALV 185 (261)
Q Consensus 117 hp~gE~alArAA~~~Gi~~~lSs~ss----~sleeIa-------~~~~~~~wfQLy~~~dr~~~~~li~rAe~aG~~Alv 185 (261)
+.+-=.++.+||++.+.|.++..... .+++.+. +..+.++ +.+.-|.....+.+.+|-++||.-++
T Consensus 25 n~e~~~aii~AAEe~~sPvIlq~s~~~~~~~g~~~~~~~~~~~ae~~~~VP---ValHLDHg~~~e~i~~Ai~~GFtSVM 101 (347)
T TIGR01521 25 NMEQMRAIMEAADKTDSPVILQASRGARSYAGAPFLRHLILAAIEEYPHIP---VVMHQDHGNSPATCQRAIQLGFTSVM 101 (347)
T ss_pred CHHHHHHHHHHHHHhCCCEEEECCcchhhhCCHHHHHHHHHHHHHhCCCCc---EEEECCCCCCHHHHHHHHHcCCCEEe
Confidence 44445899999999999999975332 2333322 2222222 34445777778899999999999988
Q ss_pred Eee
Q 024846 186 LTA 188 (261)
Q Consensus 186 vTV 188 (261)
++-
T Consensus 102 iDg 104 (347)
T TIGR01521 102 MDG 104 (347)
T ss_pred ecC
Confidence 763
No 105
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=44.48 E-value=32 Score=29.76 Aligned_cols=33 Identities=24% Similarity=0.276 Sum_probs=26.8
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEeecCCCCCCch
Q 024846 165 KRDIAATLVQRAERNGFKALVLTADTPRLGRRE 197 (261)
Q Consensus 165 dr~~~~~li~rAe~aG~~AlvvTVD~p~~G~Re 197 (261)
..+.+.+.+++|++.++++|+|.+|+|+.--..
T Consensus 14 ~~~~l~~~l~~a~~~~~~~ivl~inspGG~v~~ 46 (178)
T cd07021 14 LAAFVERALKEAKEEGADAVVLDIDTPGGRVDS 46 (178)
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEEECcCCCHHH
Confidence 345667889999999999999999999965443
No 106
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=44.18 E-value=9.9 Score=36.43 Aligned_cols=85 Identities=16% Similarity=0.177 Sum_probs=56.7
Q ss_pred CCceeEEEeeecCHHH----HHHHHHHHHHc---CCcEEEEeecCCCCCCchhHhhcCCCCC------------Cccccc
Q 024846 153 NAVRFYQLYVFKKRDI----AATLVQRAERN---GFKALVLTADTPRLGRREADIKNKMITP------------PLKNLE 213 (261)
Q Consensus 153 ~~~~wfQLy~~~dr~~----~~~li~rAe~a---G~~AlvvTVD~p~~G~Rerd~r~~f~~P------------~~~~l~ 213 (261)
.+..|+-|-+-.|+.. ..+.+++|+.. |+..+.++.|.+...+|-.++.---.+| .+.+++
T Consensus 163 ~~~~~iKlEvi~e~~~llpd~~~~v~aa~~L~~~Gf~v~~yc~~d~~~a~~l~~~g~~avmPl~~pIGsg~gv~~p~~i~ 242 (326)
T PRK11840 163 GGWDLVKLEVLGDAKTLYPDMVETLKATEILVKEGFQVMVYCSDDPIAAKRLEDAGAVAVMPLGAPIGSGLGIQNPYTIR 242 (326)
T ss_pred cCCCeEEEEEcCCCCCcccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcCCEEEeeccccccCCCCCCCHHHHH
Confidence 4567988877655433 47889999999 9999999999999999999874321223 112222
Q ss_pred ccccc-ccc-cccccccCcccch-hhh
Q 024846 214 GLLST-KVS-SVRILKLMPRDHG-CFF 237 (261)
Q Consensus 214 ~~~~~-~~~-~~~k~~m~~~d~~-~~~ 237 (261)
...+. +++ -...||=||+|+. +.|
T Consensus 243 ~~~e~~~vpVivdAGIg~~sda~~Ame 269 (326)
T PRK11840 243 LIVEGATVPVLVDAGVGTASDAAVAME 269 (326)
T ss_pred HHHHcCCCcEEEeCCCCCHHHHHHHHH
Confidence 22222 344 3367788888877 543
No 107
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=43.88 E-value=50 Score=31.94 Aligned_cols=70 Identities=16% Similarity=0.235 Sum_probs=46.0
Q ss_pred CCchhhHHHHHHHHhcCCceeecCCCC----CcHHHHH-------hhcCCceeEEEeeecCHHHHHHHHHHHHHcCCcEE
Q 024846 116 ANPEGEVATARAAASCNTIMVLSFTSS----SSIEEVA-------ASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKAL 184 (261)
Q Consensus 116 ~hp~gE~alArAA~~~Gi~~~lSs~ss----~sleeIa-------~~~~~~~wfQLy~~~dr~~~~~li~rAe~aG~~Al 184 (261)
.+.+-=.++.+||++.+.|.++..... .+++.+. +..+.+. +.+.-|.....+.+.+|-++||.-+
T Consensus 26 ~n~e~~~avi~AAEe~~sPvIlq~s~~~~~~~g~~~~~~~v~~~ae~~~~VP---VaLHLDHg~~~e~i~~Ai~~GFtSV 102 (347)
T PRK13399 26 NNMEQILAIMEAAEATDSPVILQASRGARKYAGDAMLRHMVLAAAEMYPDIP---ICLHQDHGNSPATCQSAIRSGFTSV 102 (347)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEECCcchhhhCCHHHHHHHHHHHHHhcCCCc---EEEECCCCCCHHHHHHHHhcCCCEE
Confidence 344445899999999999999875322 2333322 2222222 3444577777888999999999988
Q ss_pred EEee
Q 024846 185 VLTA 188 (261)
Q Consensus 185 vvTV 188 (261)
+++-
T Consensus 103 MiDg 106 (347)
T PRK13399 103 MMDG 106 (347)
T ss_pred EEeC
Confidence 8763
No 108
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=42.75 E-value=25 Score=34.14 Aligned_cols=23 Identities=17% Similarity=0.085 Sum_probs=18.5
Q ss_pred ecCHHHHHHHHHHHHHcCCcEEE
Q 024846 163 FKKRDIAATLVQRAERNGFKALV 185 (261)
Q Consensus 163 ~~dr~~~~~li~rAe~aG~~Alv 185 (261)
..+-..+.++.+.++++|+.+|+
T Consensus 176 ~p~~~~~~~~a~~~~~~Gadgi~ 198 (420)
T PRK08318 176 TPNITDIREPARAAKRGGADAVS 198 (420)
T ss_pred CCCcccHHHHHHHHHHCCCCEEE
Confidence 34444578889999999999999
No 109
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=42.35 E-value=71 Score=29.60 Aligned_cols=67 Identities=18% Similarity=0.180 Sum_probs=44.1
Q ss_pred HHHHHHHHhcCCceeecCCCCCcHHHHHhhc--CCceeEEEeeecCHHHHHHHHHHH-HHcCCcEEEEeecCCC
Q 024846 122 VATARAAASCNTIMVLSFTSSSSIEEVAASC--NAVRFYQLYVFKKRDIAATLVQRA-ERNGFKALVLTADTPR 192 (261)
Q Consensus 122 ~alArAA~~~Gi~~~lSs~ss~sleeIa~~~--~~~~wfQLy~~~dr~~~~~li~rA-e~aG~~AlvvTVD~p~ 192 (261)
.-+.|.|++.-||+++|-.- .++|++.+.. +..+ +-....-=..-+||.++ ++-|..+||+.||+-.
T Consensus 64 ~vv~r~A~~vfiPltVGGGI-~s~eD~~~ll~aGADK---VSINsaAv~~p~lI~~~a~~FGsQciVvaIDakr 133 (256)
T COG0107 64 DVVERVAEQVFIPLTVGGGI-RSVEDARKLLRAGADK---VSINSAAVKDPELITEAADRFGSQCIVVAIDAKR 133 (256)
T ss_pred HHHHHHHhhceeeeEecCCc-CCHHHHHHHHHcCCCe---eeeChhHhcChHHHHHHHHHhCCceEEEEEEeee
Confidence 35778899999999999654 6888887642 2111 11111111113567666 6689999999999855
No 110
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=42.15 E-value=82 Score=30.46 Aligned_cols=66 Identities=21% Similarity=0.158 Sum_probs=42.0
Q ss_pred chhhHHHHHHHHhcCCceeec---CCCCCcHHHHHhhcC--CceeEEEeeecCHHHHHHHHHHHHHcCCcEEEE
Q 024846 118 PEGEVATARAAASCNTIMVLS---FTSSSSIEEVAASCN--AVRFYQLYVFKKRDIAATLVQRAERNGFKALVL 186 (261)
Q Consensus 118 p~gE~alArAA~~~Gi~~~lS---s~ss~sleeIa~~~~--~~~wfQLy~~~dr~~~~~li~rAe~aG~~Alvv 186 (261)
..|+.++|+||.++|+-+..+ |-+|.=+|.+++..+ +..++|. .|.-......-=|..+|++++.-
T Consensus 7 ~~GNeAiA~ga~~ag~~~~a~YPITPsTei~e~la~~~~~~~~~~vq~---E~E~aA~~~a~GAs~aG~Ra~Ta 77 (376)
T PRK08659 7 LQGNEACAEGAIAAGCRFFAGYPITPSTEIAEVMARELPKVGGVFIQM---EDEIASMAAVIGASWAGAKAMTA 77 (376)
T ss_pred eehHHHHHHHHHHhCCCEEEEcCCCChHHHHHHHHHhhhhhCCEEEEe---CchHHHHHHHHhHHhhCCCeEee
Confidence 469999999999999998887 344434455555433 2334443 45555566666666667665443
No 111
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=42.12 E-value=78 Score=29.15 Aligned_cols=25 Identities=40% Similarity=0.460 Sum_probs=18.1
Q ss_pred cCHHHHHHHHHHH---HHcCCcEEEEee
Q 024846 164 KKRDIAATLVQRA---ERNGFKALVLTA 188 (261)
Q Consensus 164 ~dr~~~~~li~rA---e~aG~~AlvvTV 188 (261)
++.+..+++++|| ++||+.+|++-.
T Consensus 152 rt~~~a~~~i~ra~a~~~AGA~~i~lE~ 179 (254)
T cd06557 152 KTEEEAERLLEDALALEEAGAFALVLEC 179 (254)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCEEEEcC
Confidence 3444467888887 569999998843
No 112
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=41.81 E-value=90 Score=30.47 Aligned_cols=67 Identities=15% Similarity=0.111 Sum_probs=47.4
Q ss_pred chhhHHHHHHHHhcCCceeec---CCCCCcHHHHHhhcC-C---ceeEEEeeecCHHHHHHHHHHHHHcCCcEEEEe
Q 024846 118 PEGEVATARAAASCNTIMVLS---FTSSSSIEEVAASCN-A---VRFYQLYVFKKRDIAATLVQRAERNGFKALVLT 187 (261)
Q Consensus 118 p~gE~alArAA~~~Gi~~~lS---s~ss~sleeIa~~~~-~---~~wfQLy~~~dr~~~~~li~rAe~aG~~AlvvT 187 (261)
..|+.++|+||..+|+-+..+ |-+|.=+|.+++..+ + -.|+| ..|.-.....+-=|-.+|+++..-|
T Consensus 13 ~~GNeAiA~ga~~Ag~~~~a~YPITPsTeI~e~la~~~~~g~~~~~~vq---~E~E~~A~~~~~GAs~aGaRa~TaT 86 (407)
T PRK09622 13 WDGNTAASNALRQAQIDVVAAYPITPSTPIVQNYGSFKANGYVDGEFVM---VESEHAAMSACVGAAAAGGRVATAT 86 (407)
T ss_pred cchHHHHHHHHHHhCCCEEEEECCCCccHHHHHHHHHhhCCCcCcEEEe---eccHHHHHHHHHHHHhhCcCEEeec
Confidence 469999999999999998887 445444466655443 2 24555 3577666788888888898876544
No 113
>cd08585 GDPD_like_3 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity with Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=41.48 E-value=79 Score=28.24 Aligned_cols=26 Identities=23% Similarity=0.248 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHc-CCcEEEEeecCCCC
Q 024846 168 IAATLVQRAERN-GFKALVLTADTPRL 193 (261)
Q Consensus 168 ~~~~li~rAe~a-G~~AlvvTVD~p~~ 193 (261)
...+++++++++ |.+-.+.|||.+..
T Consensus 196 ~~~~~v~~~~~~~G~~v~vWTVnd~~~ 222 (237)
T cd08585 196 LPNPFVTLARALLGMPVIVWTVRTEED 222 (237)
T ss_pred CcCHHHHHHHHhcCCcEEEEeCCCHHH
Confidence 446789999999 99999999997653
No 114
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=41.14 E-value=62 Score=30.38 Aligned_cols=68 Identities=18% Similarity=0.192 Sum_probs=43.3
Q ss_pred CchhhHHHHHHHHhcCCceeecCCCC----Cc-HHHHH-------hhcC-CceeEEEeeecCHHHHHHHHHHHHHcCCcE
Q 024846 117 NPEGEVATARAAASCNTIMVLSFTSS----SS-IEEVA-------ASCN-AVRFYQLYVFKKRDIAATLVQRAERNGFKA 183 (261)
Q Consensus 117 hp~gE~alArAA~~~Gi~~~lSs~ss----~s-leeIa-------~~~~-~~~wfQLy~~~dr~~~~~li~rAe~aG~~A 183 (261)
+.+-=.++.+||++.+.|.++..... .+ ++.+. +... .++ +.+.-|.....+.+++|-++||.-
T Consensus 27 n~e~~~avi~AAee~~sPvIl~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~vP---V~lHLDHg~~~e~i~~ai~~GftS 103 (286)
T PRK08610 27 NLEFTQAILEASQEENAPVILGVSEGAARYMSGFYTVVKMVEGLMHDLNITIP---VAIHLDHGSSFEKCKEAIDAGFTS 103 (286)
T ss_pred CHHHHHHHHHHHHHHCCCEEEEcCccHHhhcCcHHHHHHHHHHHHHHcCCCCC---EEEECCCCCCHHHHHHHHHcCCCE
Confidence 44444789999999999999975332 12 44332 1222 121 334447766778888888889988
Q ss_pred EEEe
Q 024846 184 LVLT 187 (261)
Q Consensus 184 lvvT 187 (261)
++++
T Consensus 104 VM~D 107 (286)
T PRK08610 104 VMID 107 (286)
T ss_pred EEEe
Confidence 7776
No 115
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=40.58 E-value=1.9e+02 Score=23.79 Aligned_cols=72 Identities=11% Similarity=0.014 Sum_probs=44.6
Q ss_pred CchhhHHHHHHHHhcCCceeecCCCCCcHHHHHhhcCC--ce-eEEEeeec---CHHHHHHHHHHHHHcCCcEEEEeecC
Q 024846 117 NPEGEVATARAAASCNTIMVLSFTSSSSIEEVAASCNA--VR-FYQLYVFK---KRDIAATLVQRAERNGFKALVLTADT 190 (261)
Q Consensus 117 hp~gE~alArAA~~~Gi~~~lSs~ss~sleeIa~~~~~--~~-wfQLy~~~---dr~~~~~li~rAe~aG~~AlvvTVD~ 190 (261)
..+.-..+++.+.+.|+..++-.. .-++.+.+..++ +. ..++-... ..+...+++++|+++|+.++.++...
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~g--~~i~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v~~~~ 88 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVNP--GYVRLAADALAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDVVINI 88 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEECH--HHHHHHHHHhCCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEEeccH
Confidence 344457788888888876655443 334555554432 22 23332211 14667888999999999999997653
No 116
>PRK12855 hypothetical protein; Provisional
Probab=40.52 E-value=34 Score=27.46 Aligned_cols=27 Identities=15% Similarity=0.113 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHcCCcEEE-EeecCCC
Q 024846 166 RDIAATLVQRAERNGFKALV-LTADTPR 192 (261)
Q Consensus 166 r~~~~~li~rAe~aG~~Alv-vTVD~p~ 192 (261)
++..++|.++|++.|+.||+ +.+|...
T Consensus 59 ~~A~~rm~~~A~~lGAnAVVgvr~d~~~ 86 (103)
T PRK12855 59 DIAMEEMKTLARQKNANAIVGIDVDYEV 86 (103)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEEEhhH
Confidence 35568999999999999965 6666644
No 117
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=39.33 E-value=63 Score=31.24 Aligned_cols=69 Identities=16% Similarity=0.209 Sum_probs=44.7
Q ss_pred CchhhHHHHHHHHhcCCceeecCCCC----CcHHHHH-------hhcCCceeEEEeeecCHHHHHHHHHHHHHcCCcEEE
Q 024846 117 NPEGEVATARAAASCNTIMVLSFTSS----SSIEEVA-------ASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALV 185 (261)
Q Consensus 117 hp~gE~alArAA~~~Gi~~~lSs~ss----~sleeIa-------~~~~~~~wfQLy~~~dr~~~~~li~rAe~aG~~Alv 185 (261)
+.+-=.++.+||++.+.|.++..... .+++.+. +..+.+. +.+.-|.....+.+.+|-++||.-++
T Consensus 27 n~e~~~avi~AAee~~sPvIiq~s~~~~~~~g~~~~~~~~~~~a~~~~~VP---ValHLDHg~~~e~i~~ai~~GftSVM 103 (347)
T PRK09196 27 NLEQVQAIMEAADETDSPVILQASAGARKYAGEPFLRHLILAAVEEYPHIP---VVMHQDHGNSPATCQRAIQLGFTSVM 103 (347)
T ss_pred CHHHHHHHHHHHHHhCCCEEEECCccHhhhCCHHHHHHHHHHHHHhCCCCc---EEEECCCCCCHHHHHHHHHcCCCEEE
Confidence 34444899999999999999875322 2233322 1122222 33445777777889999999999888
Q ss_pred Eee
Q 024846 186 LTA 188 (261)
Q Consensus 186 vTV 188 (261)
++-
T Consensus 104 iDg 106 (347)
T PRK09196 104 MDG 106 (347)
T ss_pred ecC
Confidence 763
No 118
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=39.19 E-value=1.1e+02 Score=26.65 Aligned_cols=63 Identities=14% Similarity=0.130 Sum_probs=35.1
Q ss_pred HHHHHHHHhcCCceeecCCCCCcHHHHHhhcCCceeEEEeeecCH---HH----HHHHHHHHHHcCCcEEEEe
Q 024846 122 VATARAAASCNTIMVLSFTSSSSIEEVAASCNAVRFYQLYVFKKR---DI----AATLVQRAERNGFKALVLT 187 (261)
Q Consensus 122 ~alArAA~~~Gi~~~lSs~ss~sleeIa~~~~~~~wfQLy~~~dr---~~----~~~li~rAe~aG~~AlvvT 187 (261)
..+|+++.++|+..+... +...++++.+...-+....+| +|- .. ..+.++.|.++|+++|+++
T Consensus 26 ~~~a~a~~~~G~~~~~~~-~~~~i~~i~~~~~~Pil~~~~--~d~~~~~~~~~~~~~~v~~a~~aGad~I~~d 95 (221)
T PRK01130 26 AAMALAAVQGGAVGIRAN-GVEDIKAIRAVVDVPIIGIIK--RDYPDSEVYITPTLKEVDALAAAGADIIALD 95 (221)
T ss_pred HHHHHHHHHCCCeEEEcC-CHHHHHHHHHhCCCCEEEEEe--cCCCCCCceECCCHHHHHHHHHcCCCEEEEe
Confidence 789999999998665532 222334444433222111223 110 01 2356899999999955553
No 119
>PF01906 YbjQ_1: Putative heavy-metal-binding; InterPro: IPR002765 This family of bacterial proteins have not been characterised.; PDB: 3QKB_A 1VR4_D 1Y2I_D 2GTC_C.
Probab=38.87 E-value=37 Score=26.74 Aligned_cols=26 Identities=19% Similarity=0.273 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHcCCcEEE-EeecCC
Q 024846 166 RDIAATLVQRAERNGFKALV-LTADTP 191 (261)
Q Consensus 166 r~~~~~li~rAe~aG~~Alv-vTVD~p 191 (261)
++..++|.++|++.|+.||+ +.+|..
T Consensus 59 ~~A~~~L~~~A~~~GAnAVIgv~~~~~ 85 (105)
T PF01906_consen 59 EEALERLKEEAKELGANAVIGVRFDYS 85 (105)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEEEEEEE
T ss_pred HHHHHHHHHHHhhCCCCEEEEEEEEee
Confidence 45678999999999999975 555543
No 120
>KOG1436 consensus Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=38.53 E-value=11 Score=36.28 Aligned_cols=44 Identities=30% Similarity=0.283 Sum_probs=32.1
Q ss_pred hhcHHHHHHHhhccccccccccCCCCCCcceeeCCcccCcceeecc
Q 024846 64 EHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAP 109 (261)
Q Consensus 64 e~T~~~N~~Af~ri~L~pRvL~dv~~~DtsttllG~~ls~Pi~iAP 109 (261)
|.+.|--.. +.+|.|.||-=.. ....+.+++||++++-||++|.
T Consensus 58 E~sHrlAv~-aas~gl~Pr~~~~-d~~~L~~k~~g~~f~NPiglAA 101 (398)
T KOG1436|consen 58 EFSHRLAVL-AASWGLLPRDRVA-DDASLETKVLGRKFSNPIGLAA 101 (398)
T ss_pred HHHHHHHHH-HHHhCCCchhccC-CccchhhHHhhhhccCchhhhh
Confidence 444444443 5789999986443 2356888999999999999976
No 121
>PRK02877 hypothetical protein; Provisional
Probab=38.08 E-value=38 Score=27.20 Aligned_cols=29 Identities=24% Similarity=0.248 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHcCCcEEE-EeecCCCCC
Q 024846 166 RDIAATLVQRAERNGFKALV-LTADTPRLG 194 (261)
Q Consensus 166 r~~~~~li~rAe~aG~~Alv-vTVD~p~~G 194 (261)
++.+++|.++|++.|+.||+ +.+|....|
T Consensus 59 ~~A~~rm~~~A~~lGAnAVIgvr~d~~~i~ 88 (106)
T PRK02877 59 EIAFEELGEQARALGADAVVGIDIDYETVG 88 (106)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEEEehhcc
Confidence 45568999999999999975 667765553
No 122
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=37.77 E-value=1.5e+02 Score=29.65 Aligned_cols=84 Identities=12% Similarity=0.027 Sum_probs=53.0
Q ss_pred eeCCcccCcceeeccccccccCCchhhHHHHHHHHhcCCceeecCCCCCcHHHHHhh-------cC-Cc-eeEEEeeec-
Q 024846 95 TILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAAS-------CN-AV-RFYQLYVFK- 164 (261)
Q Consensus 95 tllG~~ls~Pi~iAP~g~~~l~hp~gE~alArAA~~~Gi~~~lSs~ss~sleeIa~~-------~~-~~-~wfQLy~~~- 164 (261)
++||. ..||+.+||++ +. ....++.|..++|..-.+++.. .++++|.+. .+ ++ .-+-|..+.
T Consensus 13 ~~lgi--ryPiiqgpMa~-Gi----Ss~eLVaAVs~AGgLG~lgag~-l~~e~l~~~I~~ir~~~~~~p~fGVNL~~~~~ 84 (444)
T TIGR02814 13 EDYGV--RYAYVAGAMAN-GI----ASAELVIAMGRAGILGFFGAGG-LPLEEVEQAIHRIQQALPGGPAYGVNLIHSPS 84 (444)
T ss_pred HHhCC--CCcEECccccC-CC----CCHHHHHHHHhCCceeeeCCCC-CCHHHHHHHHHHHHHhcCCCCceEEEecccCC
Confidence 45554 67999999962 22 2457888889999998888654 456655432 22 24 444454433
Q ss_pred CHHHHHHHHHHHHHcCCcEEEE
Q 024846 165 KRDIAATLVQRAERNGFKALVL 186 (261)
Q Consensus 165 dr~~~~~li~rAe~aG~~Alvv 186 (261)
+.+.-.++++...+.|++.+..
T Consensus 85 ~~~~e~~~v~l~l~~~V~~vea 106 (444)
T TIGR02814 85 DPALEWGLVDLLLRHGVRIVEA 106 (444)
T ss_pred CcccHHHHHHHHHHcCCCEEEe
Confidence 3333456778778889876644
No 123
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=37.73 E-value=86 Score=29.37 Aligned_cols=68 Identities=18% Similarity=0.220 Sum_probs=42.6
Q ss_pred CchhhHHHHHHHHhcCCceeecCCCC-----CcHHHH-------HhhcC-CceeEEEeeecCHHHHHHHHHHHHHcCCcE
Q 024846 117 NPEGEVATARAAASCNTIMVLSFTSS-----SSIEEV-------AASCN-AVRFYQLYVFKKRDIAATLVQRAERNGFKA 183 (261)
Q Consensus 117 hp~gE~alArAA~~~Gi~~~lSs~ss-----~sleeI-------a~~~~-~~~wfQLy~~~dr~~~~~li~rAe~aG~~A 183 (261)
+.+.=.++.+||++.+.|.++..... .+++.+ ++... .+ .+.+.-|.....+.+.+|-++||.-
T Consensus 27 n~e~~~avi~AAe~~~sPvIiq~~~~~~~~~~~~~~~~~~~~~~a~~~~~~V---PV~lHLDHg~~~e~i~~ai~~GftS 103 (285)
T PRK07709 27 NLEWTQAILAAAEEEKSPVILGVSEGAARHMTGFKTVVAMVKALIEEMNITV---PVAIHLDHGSSFEKCKEAIDAGFTS 103 (285)
T ss_pred CHHHHHHHHHHHHHHCCCEEEEcCcchhhhcCCHHHHHHHHHHHHHHcCCCC---cEEEECCCCCCHHHHHHHHHcCCCE
Confidence 44444788899999999988875321 233332 22222 12 2344457776778888888888888
Q ss_pred EEEe
Q 024846 184 LVLT 187 (261)
Q Consensus 184 lvvT 187 (261)
++++
T Consensus 104 VM~D 107 (285)
T PRK07709 104 VMID 107 (285)
T ss_pred EEEe
Confidence 7776
No 124
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=37.40 E-value=2.2e+02 Score=26.07 Aligned_cols=85 Identities=15% Similarity=0.028 Sum_probs=53.3
Q ss_pred cceeeccccccccCCchhhHHHHHHHHh-cCCce--eecC---CCCCcHHHHH-------hhcCC--ceeEEEeeecCHH
Q 024846 103 APIIIAPTALHKLANPEGEVATARAAAS-CNTIM--VLSF---TSSSSIEEVA-------ASCNA--VRFYQLYVFKKRD 167 (261)
Q Consensus 103 ~Pi~iAP~g~~~l~hp~gE~alArAA~~-~Gi~~--~lSs---~ss~sleeIa-------~~~~~--~~wfQLy~~~dr~ 167 (261)
.|.++.|+--.+-.+.++=..+++-..+ .|+-. +.|| ..+-+.||-. +..++ +-..++- ..+-+
T Consensus 8 ~~a~~TPf~~dg~iD~~~~~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg-~~~t~ 86 (293)
T PRK04147 8 YAALLTPFDEDGQIDEQGLRRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVG-SVNTA 86 (293)
T ss_pred eeeeECcCCCCCCcCHHHHHHHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCCCCCEEecCC-CCCHH
Confidence 4667778765555667776788888877 77644 3343 2334555522 22232 2233331 23566
Q ss_pred HHHHHHHHHHHcCCcEEEEee
Q 024846 168 IAATLVQRAERNGFKALVLTA 188 (261)
Q Consensus 168 ~~~~li~rAe~aG~~AlvvTV 188 (261)
.+.++.+.|+++|+.++++.-
T Consensus 87 ~ai~~a~~a~~~Gad~v~v~~ 107 (293)
T PRK04147 87 EAQELAKYATELGYDAISAVT 107 (293)
T ss_pred HHHHHHHHHHHcCCCEEEEeC
Confidence 778999999999999999873
No 125
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=36.99 E-value=2.9e+02 Score=25.54 Aligned_cols=38 Identities=13% Similarity=0.058 Sum_probs=26.6
Q ss_pred CceeEEEeeecCHHHHHHHHHHHHHc---CCcEEEEeecCCCC
Q 024846 154 AVRFYQLYVFKKRDIAATLVQRAERN---GFKALVLTADTPRL 193 (261)
Q Consensus 154 ~~~wfQLy~~~dr~~~~~li~rAe~a---G~~AlvvTVD~p~~ 193 (261)
.+...|+.-. .+...+..++.++. |+.+|-+-+=+|..
T Consensus 92 ~pvivsi~g~--~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~ 132 (294)
T cd04741 92 KPFFISVTGS--AEDIAAMYKKIAAHQKQFPLAMELNLSCPNV 132 (294)
T ss_pred CeEEEECCCC--HHHHHHHHHHHHhhccccccEEEEECCCCCC
Confidence 3456676533 55566667777664 79999999999885
No 126
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=36.70 E-value=88 Score=30.21 Aligned_cols=32 Identities=13% Similarity=0.158 Sum_probs=22.5
Q ss_pred hhhHHHHHHHHhcCCceeecCCCCCcHHHHHh
Q 024846 119 EGEVATARAAASCNTIMVLSFTSSSSIEEVAA 150 (261)
Q Consensus 119 ~gE~alArAA~~~Gi~~~lSs~ss~sleeIa~ 150 (261)
+|-..+.+.|.+.|++++.+-....+++.+.+
T Consensus 169 e~l~~L~~~~~~~Gl~~~t~v~d~~~~~~l~~ 200 (360)
T PRK12595 169 EGLKILKQVADEYGLAVISEIVNPADVEVALD 200 (360)
T ss_pred HHHHHHHHHHHHcCCCEEEeeCCHHHHHHHHH
Confidence 34467888888888888887666666665543
No 127
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=35.68 E-value=2.7e+02 Score=25.41 Aligned_cols=84 Identities=14% Similarity=0.025 Sum_probs=47.1
Q ss_pred cceeeccccccccCCchhhHHHHHHHHhc-CCcee--ecC---CCCCcHHHH-------HhhcCC--ceeEEEeeecCHH
Q 024846 103 APIIIAPTALHKLANPEGEVATARAAASC-NTIMV--LSF---TSSSSIEEV-------AASCNA--VRFYQLYVFKKRD 167 (261)
Q Consensus 103 ~Pi~iAP~g~~~l~hp~gE~alArAA~~~-Gi~~~--lSs---~ss~sleeI-------a~~~~~--~~wfQLy~~~dr~ 167 (261)
.|..+.|+--.+-.+.++-..+++-..+. |+-.+ .|| ..+-+.||- .+...+ +...++- ..+-+
T Consensus 5 ~~a~~TPf~~dg~iD~~~~~~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~-~~~~~ 83 (288)
T cd00954 5 IAALLTPFDENGEINEDVLRAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVG-SLNLK 83 (288)
T ss_pred eeceECCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccC-CCCHH
Confidence 35566676544445555556666666666 65443 333 223445442 122222 1122221 23456
Q ss_pred HHHHHHHHHHHcCCcEEEEe
Q 024846 168 IAATLVQRAERNGFKALVLT 187 (261)
Q Consensus 168 ~~~~li~rAe~aG~~AlvvT 187 (261)
.+.++.+.|+++|+.++++.
T Consensus 84 ~ai~~a~~a~~~Gad~v~~~ 103 (288)
T cd00954 84 ESQELAKHAEELGYDAISAI 103 (288)
T ss_pred HHHHHHHHHHHcCCCEEEEe
Confidence 67888899999999999876
No 128
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=35.63 E-value=99 Score=28.54 Aligned_cols=76 Identities=11% Similarity=0.090 Sum_probs=44.5
Q ss_pred cccccccCCchhhHHHHHHHHhcCCceeecCCCCCcHHHHHhh--------------------cC-CceeEEEeee----
Q 024846 109 PTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAAS--------------------CN-AVRFYQLYVF---- 163 (261)
Q Consensus 109 P~g~~~l~hp~gE~alArAA~~~Gi~~~lSs~ss~sleeIa~~--------------------~~-~~~wfQLy~~---- 163 (261)
|-+..++. .+|=..+.+.|++.|++++..-.....++.+.+. +. +. .+.+.
T Consensus 57 ~~sf~G~G-~~gl~~L~~~~~~~Gl~~~Tev~d~~~v~~~~e~vdilqIgs~~~~n~~LL~~va~tgk---PVilk~G~~ 132 (250)
T PRK13397 57 AASFQGLG-LQGIRYLHEVCQEFGLLSVSEIMSERQLEEAYDYLDVIQVGARNMQNFEFLKTLSHIDK---PILFKRGLM 132 (250)
T ss_pred CcccCCCC-HHHHHHHHHHHHHcCCCEEEeeCCHHHHHHHHhcCCEEEECcccccCHHHHHHHHccCC---eEEEeCCCC
Confidence 34444443 2455778888888888888776665555555432 11 11 12222
Q ss_pred cCHHHHHHHHHHHHHcCCcEEEEee
Q 024846 164 KKRDIAATLVQRAERNGFKALVLTA 188 (261)
Q Consensus 164 ~dr~~~~~li~rAe~aG~~AlvvTV 188 (261)
-+.+..+.-++...+.|.+-|++.=
T Consensus 133 ~t~~e~~~A~e~i~~~Gn~~i~L~e 157 (250)
T PRK13397 133 ATIEEYLGALSYLQDTGKSNIILCE 157 (250)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEEc
Confidence 2455666667777788887777664
No 129
>PRK12856 hypothetical protein; Provisional
Probab=35.31 E-value=45 Score=26.71 Aligned_cols=28 Identities=18% Similarity=0.219 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHcCCcEEE-EeecCCCC
Q 024846 166 RDIAATLVQRAERNGFKALV-LTADTPRL 193 (261)
Q Consensus 166 r~~~~~li~rAe~aG~~Alv-vTVD~p~~ 193 (261)
++..++|.++|++.|+.||+ +.+|....
T Consensus 59 ~~A~~rm~~~A~~lGAnAVvgvr~d~~~~ 87 (103)
T PRK12856 59 DIAMDEMKELAKQKGANAIVGVDVDYEVV 87 (103)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEEEhhHh
Confidence 35568999999999999965 67776543
No 130
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=35.23 E-value=75 Score=30.42 Aligned_cols=68 Identities=13% Similarity=0.224 Sum_probs=41.7
Q ss_pred CchhhHHHHHHHHhcCCceeecCCCC----Cc---HHHHH-------hhcC-CceeEEEeeecCHHHHHHHHHHHHHcCC
Q 024846 117 NPEGEVATARAAASCNTIMVLSFTSS----SS---IEEVA-------ASCN-AVRFYQLYVFKKRDIAATLVQRAERNGF 181 (261)
Q Consensus 117 hp~gE~alArAA~~~Gi~~~lSs~ss----~s---leeIa-------~~~~-~~~wfQLy~~~dr~~~~~li~rAe~aG~ 181 (261)
+.+-=.++.+||++.+.|.++....+ .+ ++.+. +... .++ +-+.-|.....+.+.+|-++||
T Consensus 33 n~e~~~avi~AAee~~sPvIlq~s~~~~~~~g~~~~~~~~~~~~~~a~~a~~~VP---V~lHLDHg~~~e~i~~ai~~Gf 109 (321)
T PRK07084 33 NMEQLQAIIQACVETKSPVILQVSKGARKYANATLLRYMAQGAVEYAKELGCPIP---IVLHLDHGDSFELCKDCIDSGF 109 (321)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEechhHHhhCCchHHHHHHHHHHHHHHHcCCCCc---EEEECCCCCCHHHHHHHHHcCC
Confidence 33444899999999999999875321 12 33222 1111 121 2233466666778888888888
Q ss_pred cEEEEe
Q 024846 182 KALVLT 187 (261)
Q Consensus 182 ~AlvvT 187 (261)
.-++++
T Consensus 110 tSVMiD 115 (321)
T PRK07084 110 SSVMID 115 (321)
T ss_pred CEEEee
Confidence 887765
No 131
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=35.12 E-value=1.6e+02 Score=28.74 Aligned_cols=67 Identities=16% Similarity=0.174 Sum_probs=45.6
Q ss_pred chhhHHHHHHHHhcCCceeec---CCCCCcHHHHHhhcC----CceeEEEeeecCHHHHHHHHHHHHHcCCcEEEEe
Q 024846 118 PEGEVATARAAASCNTIMVLS---FTSSSSIEEVAASCN----AVRFYQLYVFKKRDIAATLVQRAERNGFKALVLT 187 (261)
Q Consensus 118 p~gE~alArAA~~~Gi~~~lS---s~ss~sleeIa~~~~----~~~wfQLy~~~dr~~~~~li~rAe~aG~~AlvvT 187 (261)
..|+.++|+||..+|+-+..+ |-+|.=+|.+++..+ +..|.|. .|.......+-=|-.+|+++..-|
T Consensus 7 ~~GNeAvA~aa~~Ag~~v~a~YPITPsTei~e~la~~~~~g~~~~~~v~~---EsE~aA~~~~~GAs~aGaRa~TaT 80 (394)
T PRK08367 7 MKANEAAAWAAKLAKPKVIAAFPITPSTLVPEKISEFVANGELDAEFIKV---ESEHSAISACVGASAAGVRTFTAT 80 (394)
T ss_pred ccHHHHHHHHHHHhCCCEEEEECCCCccHHHHHHHHHhhcCCcCeEEEEe---CCHHHHHHHHHHHHhhCCCeEeee
Confidence 369999999999999998877 444444566665432 3456664 566666677777777777765433
No 132
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=35.05 E-value=60 Score=29.66 Aligned_cols=24 Identities=21% Similarity=0.205 Sum_probs=19.0
Q ss_pred ecCHHHHHHHHHHHHHcCCcEEEE
Q 024846 163 FKKRDIAATLVQRAERNGFKALVL 186 (261)
Q Consensus 163 ~~dr~~~~~li~rAe~aG~~Alvv 186 (261)
..+.+...+++++++++|+.+|.+
T Consensus 162 ~~~~~~~~~~a~~~~~~G~d~i~~ 185 (296)
T cd04740 162 TPNVTDIVEIARAAEEAGADGLTL 185 (296)
T ss_pred CCCchhHHHHHHHHHHcCCCEEEE
Confidence 334456788899999999999876
No 133
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=34.75 E-value=47 Score=30.77 Aligned_cols=83 Identities=12% Similarity=-0.056 Sum_probs=44.6
Q ss_pred ceeEEEeeecCHHHHHHHHHHHHHc--CCcEEEEe--------ecCCCCCC--chhHhhcCCCCC-----Cccccccc--
Q 024846 155 VRFYQLYVFKKRDIAATLVQRAERN--GFKALVLT--------ADTPRLGR--READIKNKMITP-----PLKNLEGL-- 215 (261)
Q Consensus 155 ~~wfQLy~~~dr~~~~~li~rAe~a--G~~AlvvT--------VD~p~~G~--Rerd~r~~f~~P-----~~~~l~~~-- 215 (261)
+.|.=|-+..|.+.+.++.+.++++ |+.+|+++ ||.-.... .......+++-| .++.+..+
T Consensus 159 Pv~vKl~p~~~~~~~~~~a~~l~~~~~G~~gi~~~Nt~~~~~~id~~~~~~~~~~~~~~gG~SG~~i~~~al~~v~~~~~ 238 (294)
T cd04741 159 PVGVKTPPYTDPAQFDTLAEALNAFACPISFITATNTLGNGLVLDPERETVVLKPKTGFGGLAGAYLHPLALGNVRTFRR 238 (294)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHhccccCCcEEEEEccCCccccccCCCCCcccCCCCCCCCcCchhhHHHHHHHHHHHHH
Confidence 4455555555666677888888888 88888853 44211000 001112233322 23222322
Q ss_pred -cccccc-cccccccCcccch-hhh
Q 024846 216 -LSTKVS-SVRILKLMPRDHG-CFF 237 (261)
Q Consensus 216 -~~~~~~-~~~k~~m~~~d~~-~~~ 237 (261)
....++ ....|+.|++|+. ++.
T Consensus 239 ~~~~~ipIig~GGI~s~~da~e~l~ 263 (294)
T cd04741 239 LLPSEIQIIGVGGVLDGRGAFRMRL 263 (294)
T ss_pred hcCCCCCEEEeCCCCCHHHHHHHHH
Confidence 222466 4478899999987 654
No 134
>PRK01119 hypothetical protein; Provisional
Probab=34.74 E-value=47 Score=26.69 Aligned_cols=29 Identities=28% Similarity=0.391 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHcCCcEEE-EeecCCCCC
Q 024846 166 RDIAATLVQRAERNGFKALV-LTADTPRLG 194 (261)
Q Consensus 166 r~~~~~li~rAe~aG~~Alv-vTVD~p~~G 194 (261)
++.+++|.++|++.|+.||+ |.+|....|
T Consensus 59 ~~A~~rm~~~A~~lGAnAVIgvr~d~~~ig 88 (106)
T PRK01119 59 EEAIREMEQRAKDIGANAVIGVDIDYEVLG 88 (106)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEEEeeeec
Confidence 35568999999999999976 778875543
No 135
>COG0393 Uncharacterized conserved protein [Function unknown]
Probab=34.17 E-value=47 Score=26.99 Aligned_cols=28 Identities=29% Similarity=0.415 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHcCCcEEE-EeecCCCCC
Q 024846 167 DIAATLVQRAERNGFKALV-LTADTPRLG 194 (261)
Q Consensus 167 ~~~~~li~rAe~aG~~Alv-vTVD~p~~G 194 (261)
+.+.+|.++|++.|+.|++ |.+|...+|
T Consensus 60 ~Al~rm~~~A~~lGAnAVVgvr~d~~~ig 88 (108)
T COG0393 60 EALERMVDEAEALGANAVVGVRFDYSTIG 88 (108)
T ss_pred HHHHHHHHHHHHhCCCeEEEEEechhHhC
Confidence 4568999999999999864 777765554
No 136
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=33.81 E-value=1.1e+02 Score=29.35 Aligned_cols=29 Identities=21% Similarity=0.138 Sum_probs=22.5
Q ss_pred HHHHHHHHhcCCceeecCCCCCcHHHHHh
Q 024846 122 VATARAAASCNTIMVLSFTSSSSIEEVAA 150 (261)
Q Consensus 122 ~alArAA~~~Gi~~~lSs~ss~sleeIa~ 150 (261)
..+.++|++.|++++..-+...+++.+.+
T Consensus 147 ~~L~~~~~~~Gl~v~tev~d~~~~~~l~~ 175 (335)
T PRK08673 147 KLLAEAREETGLPIVTEVMDPRDVELVAE 175 (335)
T ss_pred HHHHHHHHHcCCcEEEeeCCHHHHHHHHH
Confidence 56888899999999988777666666644
No 137
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=33.59 E-value=3.5e+02 Score=24.39 Aligned_cols=31 Identities=23% Similarity=0.258 Sum_probs=23.6
Q ss_pred eEEEeeecCHHHHHHHHHHHHHcCCcEEEEe
Q 024846 157 FYQLYVFKKRDIAATLVQRAERNGFKALVLT 187 (261)
Q Consensus 157 wfQLy~~~dr~~~~~li~rAe~aG~~AlvvT 187 (261)
+.-+-...+.+...++++.++++|+.+|+++
T Consensus 166 ~vKl~~~~~~~~~~~~a~~l~~~Gad~i~~~ 196 (289)
T cd02810 166 LVKLSPYFDLEDIVELAKAAERAGADGLTAI 196 (289)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 4334344566678899999999999999987
No 138
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=33.37 E-value=69 Score=29.61 Aligned_cols=76 Identities=11% Similarity=0.022 Sum_probs=42.6
Q ss_pred eecCHHHHHHHHHHHHHcCCcEEEE--------eecCCCC----CCchhHhhcCCCCC-----Ccccccccc---ccccc
Q 024846 162 VFKKRDIAATLVQRAERNGFKALVL--------TADTPRL----GRREADIKNKMITP-----PLKNLEGLL---STKVS 221 (261)
Q Consensus 162 ~~~dr~~~~~li~rAe~aG~~Alvv--------TVD~p~~----G~Rerd~r~~f~~P-----~~~~l~~~~---~~~~~ 221 (261)
...+.....+++++++++|+.+|++ .+|.-.. +...+....+++-| ++..+..+. ..+++
T Consensus 175 l~~~~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~~~~~~~~ip 254 (299)
T cd02940 175 LTPNITDIREIARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVSQIARAPEPGLP 254 (299)
T ss_pred CCCCchhHHHHHHHHHHcCCCEEEEecccccccccccccCCccccccCCCCcCcccCCCcchHHHHHHHHHHHhcCCCCc
Confidence 3445556789999999999999984 3442211 00001112334333 233333222 22456
Q ss_pred -cccccccCcccch-hhh
Q 024846 222 -SVRILKLMPRDHG-CFF 237 (261)
Q Consensus 222 -~~~k~~m~~~d~~-~~~ 237 (261)
....|+.|++|+. ++.
T Consensus 255 Iig~GGI~~~~da~~~l~ 272 (299)
T cd02940 255 ISGIGGIESWEDAAEFLL 272 (299)
T ss_pred EEEECCCCCHHHHHHHHH
Confidence 4578899999987 553
No 139
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=33.10 E-value=2.6e+02 Score=26.05 Aligned_cols=86 Identities=13% Similarity=0.128 Sum_probs=52.9
Q ss_pred CcceeeccccccccCCchhhHHHHHHHHhcCCceee--cC---CCCCcHHHHH-------hhcCC-c-eeEEEeeecCHH
Q 024846 102 SAPIIIAPTALHKLANPEGEVATARAAASCNTIMVL--SF---TSSSSIEEVA-------ASCNA-V-RFYQLYVFKKRD 167 (261)
Q Consensus 102 s~Pi~iAP~g~~~l~hp~gE~alArAA~~~Gi~~~l--Ss---~ss~sleeIa-------~~~~~-~-~wfQLy~~~dr~ 167 (261)
..|.++.|+--.+-.+.++-..+++-..+.|+-.++ || ..+.|.||-. +...+ + ...+.- ..+-+
T Consensus 8 vi~a~vTPF~~dg~vD~~a~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g-~~~t~ 86 (299)
T COG0329 8 VIPALVTPFDEDGSVDEEALRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVG-SNSTA 86 (299)
T ss_pred ceeccccCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecC-CCcHH
Confidence 357778887654546666667888888888865333 33 2335566532 22222 2 222222 23456
Q ss_pred HHHHHHHHHHHcCCcEEEEee
Q 024846 168 IAATLVQRAERNGFKALVLTA 188 (261)
Q Consensus 168 ~~~~li~rAe~aG~~AlvvTV 188 (261)
...++.+.|++.|++++++.-
T Consensus 87 eai~lak~a~~~Gad~il~v~ 107 (299)
T COG0329 87 EAIELAKHAEKLGADGILVVP 107 (299)
T ss_pred HHHHHHHHHHhcCCCEEEEeC
Confidence 678999999999999988763
No 140
>PRK00489 hisG ATP phosphoribosyltransferase; Reviewed
Probab=31.92 E-value=1.6e+02 Score=27.05 Aligned_cols=49 Identities=10% Similarity=0.167 Sum_probs=39.6
Q ss_pred CCCCCcHHHHHhhcCC-----------ceeEEEeeecCHHHHHHHHHHHHHcCCcEEEEe
Q 024846 139 FTSSSSIEEVAASCNA-----------VRFYQLYVFKKRDIAATLVQRAERNGFKALVLT 187 (261)
Q Consensus 139 s~ss~sleeIa~~~~~-----------~~wfQLy~~~dr~~~~~li~rAe~aG~~AlvvT 187 (261)
......+++|.+..|+ ..|+.+...-+++.+.+++.+.+++|++.|+++
T Consensus 221 ~~~~~~~~~~~~~~p~~~~ptv~~~~~~~~~av~~~~~~~~~~~~~~~l~~~ga~~i~~~ 280 (287)
T PRK00489 221 NAPKEKLDAVIALLPGLESPTVSPLGDEGWVAVHAVVPEDLVWELMDKLKALGARGILVL 280 (287)
T ss_pred eCCHHHHHHHHHhCCCCCCCcccCCCCCCeEEEEEEECHHHHHHHHHHHHHcCCCeEEEe
Confidence 3455678888776431 269999888899999999999999999999875
No 141
>COG5461 Type IV pili component [Cell motility and secretion]
Probab=31.37 E-value=1.3e+02 Score=27.29 Aligned_cols=35 Identities=14% Similarity=0.187 Sum_probs=24.2
Q ss_pred cccccccccccccccccccCcccch-hhhhcccccc
Q 024846 210 KNLEGLLSTKVSSVRILKLMPRDHG-CFFKLEGFRM 244 (261)
Q Consensus 210 ~~l~~~~~~~~~~~~k~~m~~~d~~-~~~~~~~~~~ 244 (261)
.||.+-+..+.+..-.+.|||-|+| .---|+.+|.
T Consensus 177 ~NLAAqvaNP~DLlgpR~mtPiDaerr~~vidtYR~ 212 (224)
T COG5461 177 SNLAAQVANPRDLLGPRAMTPIDAERRAIVIDTYRR 212 (224)
T ss_pred hhHHHHhCCHHHhcCcccCCccccccccceeeeeec
Confidence 4444444456666677799999999 7777777664
No 142
>cd08600 GDPD_EcGlpQ_like Glycerophosphodiester phosphodiesterase domain of Escherichia coli (GlpQ) and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli periplasmic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), GlpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two different GP-GDEs. GlpQ gene from the E. coli glp operon codes for a periplasmic phosphodiesterase GlpQ, which is the prototype of this family. GlpQ is a dimeric enzyme that hydrolyzes periplasmic glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GP
Probab=31.31 E-value=2.1e+02 Score=26.84 Aligned_cols=23 Identities=22% Similarity=0.283 Sum_probs=20.5
Q ss_pred HHHHHHHHHcCCcEEEEeecCCC
Q 024846 170 ATLVQRAERNGFKALVLTADTPR 192 (261)
Q Consensus 170 ~~li~rAe~aG~~AlvvTVD~p~ 192 (261)
.+++++|.++|....+.|||.+-
T Consensus 266 ~~~V~~ah~~Gl~V~~wTvn~~~ 288 (318)
T cd08600 266 TDLVKDAHEAGLEVHPYTVRKDA 288 (318)
T ss_pred HHHHHHHHHcCCEEEEEeccCCc
Confidence 48899999999999999999774
No 143
>cd08573 GDPD_GDE1 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE1 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE1 (also known as MIR16, membrane interacting protein of RGS16) and their metazoan homologs. GDE1 is widely expressed in mammalian tissues, including the heart, brain, liver, and kidney. It shows sequence homology to bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. GDE1 has been characterized as GPI-GDE (EC 3.1.4.44) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate glycerol phosphate and inositol. It functions as an integral membrane-bound glycoprotein interacting with regulator of G protein signaling protein RGS16, and is modulated by G
Probab=30.80 E-value=1.4e+02 Score=26.86 Aligned_cols=26 Identities=23% Similarity=0.397 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHcCCcEEEEeecCCCC
Q 024846 168 IAATLVQRAERNGFKALVLTADTPRL 193 (261)
Q Consensus 168 ~~~~li~rAe~aG~~AlvvTVD~p~~ 193 (261)
...++++++.++|.+-.+.|||.+..
T Consensus 216 ~~~~~v~~~~~~G~~v~vWTVn~~~~ 241 (258)
T cd08573 216 ISSAYVRYWRARGIRVIAWTVNTPTE 241 (258)
T ss_pred cCHHHHHHHHHCCCEEEEEecCCHHH
Confidence 45789999999999999999998653
No 144
>PRK01217 hypothetical protein; Provisional
Probab=30.71 E-value=59 Score=26.48 Aligned_cols=29 Identities=14% Similarity=0.323 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHcCCcEEE-EeecCCCCC
Q 024846 166 RDIAATLVQRAERNGFKALV-LTADTPRLG 194 (261)
Q Consensus 166 r~~~~~li~rAe~aG~~Alv-vTVD~p~~G 194 (261)
++.+.+|.++|++.|+.||+ |.+|+...|
T Consensus 66 ~eA~~rm~~~A~~lGAnAVVgvrfd~s~i~ 95 (114)
T PRK01217 66 NQALERMIDHAKELGANAVINVRFDSNEIS 95 (114)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEEEHHHhc
Confidence 35668999999999999965 777765543
No 145
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=30.69 E-value=3.5e+02 Score=23.25 Aligned_cols=83 Identities=13% Similarity=0.050 Sum_probs=49.0
Q ss_pred ceeeccccccccCCchhhHHHHHHHHhcCCceeecCC-----CCCcHH---HHHhhc--CCceeEEEeeecCHHHHHHHH
Q 024846 104 PIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFT-----SSSSIE---EVAASC--NAVRFYQLYVFKKRDIAATLV 173 (261)
Q Consensus 104 Pi~iAP~g~~~l~hp~gE~alArAA~~~Gi~~~lSs~-----ss~sle---eIa~~~--~~~~wfQLy~~~dr~~~~~li 173 (261)
|+++|||-+. .+.+.=+.+.+.|.-.+.+-+ ....-. ...... +.+...||. -.+.+...+..
T Consensus 1 ~~~~aPm~~~------~~~~fR~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~qi~-g~~~~~~~~aa 73 (231)
T cd02801 1 KLILAPMVGV------TDLPFRLLCRRYGADLVYTEMISAKALLRGNRKRLRLLTRNPEERPLIVQLG-GSDPETLAEAA 73 (231)
T ss_pred CeEeCCCCCC------cCHHHHHHHHHHCCCEEEecCEEEhhhhhcCHHHHHhhccCccCCCEEEEEc-CCCHHHHHHHH
Confidence 6789997443 355555566666633333211 111111 111112 245567775 34566778888
Q ss_pred HHHHHcCCcEEEEeecCCCC
Q 024846 174 QRAERNGFKALVLTADTPRL 193 (261)
Q Consensus 174 ~rAe~aG~~AlvvTVD~p~~ 193 (261)
+++.++||.+|=|++-+|..
T Consensus 74 ~~~~~aG~d~ieln~g~p~~ 93 (231)
T cd02801 74 KIVEELGADGIDLNMGCPSP 93 (231)
T ss_pred HHHHhcCCCEEEEeCCCCHH
Confidence 99999999999999887653
No 146
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=30.62 E-value=77 Score=27.19 Aligned_cols=30 Identities=30% Similarity=0.379 Sum_probs=25.0
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEeecCCCCC
Q 024846 165 KRDIAATLVQRAERNGFKALVLTADTPRLG 194 (261)
Q Consensus 165 dr~~~~~li~rAe~aG~~AlvvTVD~p~~G 194 (261)
+...+.+.+++|++-+.++|+|.||+|+..
T Consensus 14 ~~~~l~~~l~~a~~~~~~~vvl~InSpGG~ 43 (187)
T cd07020 14 TADYLERAIDQAEEGGADALIIELDTPGGL 43 (187)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEEECCCCC
Confidence 455678888888888899999999999953
No 147
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=30.49 E-value=40 Score=31.32 Aligned_cols=99 Identities=16% Similarity=0.163 Sum_probs=0.0
Q ss_pred hHHHHhhhhHHHHhhhhhccccCCcCCCCCCCHHHHHHHHHhhCChhhhhhhcCCccchhcHHHHHHHhhcccccccccc
Q 024846 6 LCMQYVASGIDLLEKLINVHVCRFQMAAEPVNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILV 85 (261)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~e~~Ar~~Lp~~~~~Y~~gGa~de~T~~~N~~Af~ri~L~pRvL~ 85 (261)
+|.|+ |+|.....-.-|.+=--...++++|+.-.|++.+....-..+..=-|.-.+..+|.-.+..+-+.
T Consensus 102 n~rn~-----~LL~a~g~t~kpV~lKrG~~~t~~e~l~aaeyi~~~Gn~~viLcERG~tf~y~r~~~D~~~ip~~----- 171 (258)
T TIGR01362 102 LCRQT-----DLLVAAAKTGRIVNVKKGQFLSPWDMKNVVEKVLSTGNKNILLCERGTSFGYNNLVVDMRSLPIM----- 171 (258)
T ss_pred hcchH-----HHHHHHhccCCeEEecCCCcCCHHHHHHHHHHHHHcCCCcEEEEeCCCCcCCCCcccchhhhHHH-----
Q ss_pred CCCCCCcceeeCCcccCcceeeccccccccCCc-----------hhh----HHHHHHHHhcCC
Q 024846 86 DVSRIDLSTTILDYKISAPIIIAPTALHKLANP-----------EGE----VATARAAASCNT 133 (261)
Q Consensus 86 dv~~~DtsttllG~~ls~Pi~iAP~g~~~l~hp-----------~gE----~alArAA~~~Gi 133 (261)
+++.+||++=|+ |. .|. ..+|+||-++|+
T Consensus 172 -------------k~~~~PVi~DpS------Hsvq~pg~~g~~s~G~r~~v~~la~AAvA~Ga 215 (258)
T TIGR01362 172 -------------RELGCPVIFDAT------HSVQQPGGLGGASGGLREFVPTLARAAVAVGI 215 (258)
T ss_pred -------------HhcCCCEEEeCC------ccccCCCCCCCCCCCcHHHHHHHHHHHHHhCC
No 148
>PRK00967 hypothetical protein; Provisional
Probab=30.49 E-value=61 Score=25.89 Aligned_cols=28 Identities=18% Similarity=0.312 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHcCCcEEE-EeecCCCC
Q 024846 166 RDIAATLVQRAERNGFKALV-LTADTPRL 193 (261)
Q Consensus 166 r~~~~~li~rAe~aG~~Alv-vTVD~p~~ 193 (261)
++..++|.++|++.|+.||+ |.+|....
T Consensus 59 ~eA~~rm~~~A~~~GAnAIIgvr~d~~~~ 87 (105)
T PRK00967 59 DIAIDRMKEEAKQKGANAIVGMRFDSSSI 87 (105)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEEEeeee
Confidence 45568999999999999976 78887654
No 149
>cd08612 GDPD_GDE4 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function has not yet been elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests GDE4 may play some distinct role from other members of the GDE family.
Probab=30.15 E-value=1.1e+02 Score=28.20 Aligned_cols=25 Identities=8% Similarity=0.262 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHcCCcEEEEeecCCC
Q 024846 168 IAATLVQRAERNGFKALVLTADTPR 192 (261)
Q Consensus 168 ~~~~li~rAe~aG~~AlvvTVD~p~ 192 (261)
...++++++.++|..-.+.|||.+.
T Consensus 249 ~~~~~v~~~~~~G~~v~vWTVNd~~ 273 (300)
T cd08612 249 MRPSLFRHLQKRGIQVYGWVLNDEE 273 (300)
T ss_pred CCHHHHHHHHHCCCEEEEeecCCHH
Confidence 3578999999999999999999753
No 150
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=30.03 E-value=1.5e+02 Score=27.26 Aligned_cols=33 Identities=24% Similarity=0.248 Sum_probs=23.1
Q ss_pred chhhHHHHHHHHhcCCceeecCCCCCcHHHHHh
Q 024846 118 PEGEVATARAAASCNTIMVLSFTSSSSIEEVAA 150 (261)
Q Consensus 118 p~gE~alArAA~~~Gi~~~lSs~ss~sleeIa~ 150 (261)
.+|-..+.+.|++.|++++..-....+++.+.+
T Consensus 77 ~~gl~~l~~~~~~~Gl~~~te~~d~~~~~~l~~ 109 (266)
T PRK13398 77 EEGLKILKEVGDKYNLPVVTEVMDTRDVEEVAD 109 (266)
T ss_pred HHHHHHHHHHHHHcCCCEEEeeCChhhHHHHHH
Confidence 445577888888888888887666655655543
No 151
>COG1879 RbsB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=29.97 E-value=1.7e+02 Score=26.48 Aligned_cols=68 Identities=19% Similarity=0.260 Sum_probs=42.4
Q ss_pred hHHHHHHHHhcCC--ceeecCCCCC---c---HHHHHhhcC-CceeEEEeeecCHHHHHHHHHHHHHcCCcEEEEeecCC
Q 024846 121 EVATARAAASCNT--IMVLSFTSSS---S---IEEVAASCN-AVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTP 191 (261)
Q Consensus 121 E~alArAA~~~Gi--~~~lSs~ss~---s---leeIa~~~~-~~~wfQLy~~~dr~~~~~li~rAe~aG~~AlvvTVD~p 191 (261)
..++-++|++.|. .....+.... . +++...... ++ +..+.|.......+++|.++|...+.++.+.+
T Consensus 52 ~~g~~~~a~~~g~~~~~~~~~~~~d~~~Q~~~i~~~ia~~~daI----iv~~~d~~~~~~~v~~a~~aGIpVv~~d~~~~ 127 (322)
T COG1879 52 RKGAEAAAKKLGVVVAVVIADAQNDVAKQIAQIEDLIAQGVDAI----IINPVDPDALTPAVKKAKAAGIPVVTVDSDIP 127 (322)
T ss_pred HHHHHHHHHHcCCcEEEEecccccChHHHHHHHHHHHHcCCCEE----EEcCCChhhhHHHHHHHHHCCCcEEEEecCCC
Confidence 4667788888895 3333332221 2 222222222 33 45678999999999999999987666666554
Q ss_pred C
Q 024846 192 R 192 (261)
Q Consensus 192 ~ 192 (261)
.
T Consensus 128 ~ 128 (322)
T COG1879 128 G 128 (322)
T ss_pred C
Confidence 4
No 152
>cd08601 GDPD_SaGlpQ_like Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) from Staphylococcus aureus, Bacillus subtilis and similar proteins. Members in this family show very high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=29.25 E-value=2e+02 Score=25.49 Aligned_cols=22 Identities=14% Similarity=0.190 Sum_probs=16.3
Q ss_pred HHHHHHHHHHcCCcEEEEeecC
Q 024846 169 AATLVQRAERNGFKALVLTADT 190 (261)
Q Consensus 169 ~~~li~rAe~aG~~AlvvTVD~ 190 (261)
..++++++.++|.+-.+.|||.
T Consensus 207 ~~~~v~~~~~~g~~v~~wTvn~ 228 (256)
T cd08601 207 DPWMVHLIHKKGLLVHPYTVNE 228 (256)
T ss_pred CHHHHHHHHHCCCEEEEEecCC
Confidence 3567777777887777778775
No 153
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=29.03 E-value=2.1e+02 Score=20.22 Aligned_cols=28 Identities=14% Similarity=0.169 Sum_probs=22.4
Q ss_pred EeeecCHHHHHHHHHHHHHcCCcEEEEe
Q 024846 160 LYVFKKRDIAATLVQRAERNGFKALVLT 187 (261)
Q Consensus 160 Ly~~~dr~~~~~li~rAe~aG~~AlvvT 187 (261)
+-..+....+.++++.|++.|++.+++|
T Consensus 54 iS~sg~t~~~~~~~~~a~~~g~~ii~it 81 (87)
T cd04795 54 LSYSGRTEELLAALEIAKELGIPVIAIT 81 (87)
T ss_pred EECCCCCHHHHHHHHHHHHcCCeEEEEe
Confidence 3344445668889999999999999999
No 154
>cd08559 GDPD_periplasmic_GlpQ_like Periplasmic glycerophosphodiester phosphodiesterase domain (GlpQ) and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in bacterial and eukaryotic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) similar to Escherichia coli periplasmic phosphodiesterase GlpQ. GP-GDEs are involved in glycerol metabolism and catalyze the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. In E. coli, there are two major G3P uptake systems: Glp and Ugp, which contain genes coding for two different GP-GDEs. GlpQ gene from the glp operon codes for a periplasmic phosphodiesterase GlpQ. GlpQ is a dimeric enzyme that hydrolyzes periplasmic glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG), glycerophosphoinositol (GPI),
Probab=28.97 E-value=1.9e+02 Score=26.65 Aligned_cols=21 Identities=24% Similarity=0.282 Sum_probs=19.2
Q ss_pred HHHHHHHHHcCCcEEEEeecC
Q 024846 170 ATLVQRAERNGFKALVLTADT 190 (261)
Q Consensus 170 ~~li~rAe~aG~~AlvvTVD~ 190 (261)
.+++++|+++|.+..+.|||.
T Consensus 246 ~~~v~~a~~~Gl~v~~WTvn~ 266 (296)
T cd08559 246 TDLVKDAHKAGLLVHPYTFRN 266 (296)
T ss_pred hHHHHHHHHcCCEEEEEEecC
Confidence 588999999999999999997
No 155
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=28.88 E-value=1.3e+02 Score=29.17 Aligned_cols=31 Identities=13% Similarity=0.135 Sum_probs=22.4
Q ss_pred hhHHHHHHHHhcCCceeecCCCCCcHHHHHh
Q 024846 120 GEVATARAAASCNTIMVLSFTSSSSIEEVAA 150 (261)
Q Consensus 120 gE~alArAA~~~Gi~~~lSs~ss~sleeIa~ 150 (261)
|=..+.+++++.|++++..-+....++.+.+
T Consensus 153 gl~~L~~~~~e~Gl~~~tev~d~~~v~~~~~ 183 (352)
T PRK13396 153 ALELLAAAREATGLGIITEVMDAADLEKIAE 183 (352)
T ss_pred HHHHHHHHHHHcCCcEEEeeCCHHHHHHHHh
Confidence 3367788888899998887666666666543
No 156
>COG4252 Predicted transmembrane sensor domain [Signal transduction mechanisms]
Probab=28.76 E-value=66 Score=31.73 Aligned_cols=31 Identities=16% Similarity=-0.013 Sum_probs=27.3
Q ss_pred eecCHHHHHHHHHHHHHcCCcEEEEeecCCC
Q 024846 162 VFKKRDIAATLVQRAERNGFKALVLTADTPR 192 (261)
Q Consensus 162 ~~~dr~~~~~li~rAe~aG~~AlvvTVD~p~ 192 (261)
+++++....+++++-+++|.++|+++|--.-
T Consensus 78 wp~pr~~~A~Ll~kL~a~qp~aIgLDi~r~~ 108 (400)
T COG4252 78 WPWPRAALARLLDKLAAAQPRAIGLDIYRDL 108 (400)
T ss_pred CCCCHHHHHHHHHHHHhcCCcEEEEEEeecC
Confidence 5778999999999999999999999996544
No 157
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=28.65 E-value=1.3e+02 Score=27.92 Aligned_cols=55 Identities=13% Similarity=0.097 Sum_probs=23.6
Q ss_pred HHHhcC-CceeecCCCCCcHHHHHhhcC-CceeEEEeeec-----CHHHHHHHHHHHHHcCC
Q 024846 127 AAASCN-TIMVLSFTSSSSIEEVAASCN-AVRFYQLYVFK-----KRDIAATLVQRAERNGF 181 (261)
Q Consensus 127 AA~~~G-i~~~lSs~ss~sleeIa~~~~-~~~wfQLy~~~-----dr~~~~~li~rAe~aG~ 181 (261)
.|++.+ +|.++----..+++.|..+.. |..+.|+=-.. +-+.++++++.|.+.|+
T Consensus 68 ~a~~~~~vpv~lhlDH~~~~e~i~~ai~~Gf~sVmid~s~l~~~eni~~t~~v~~~a~~~gv 129 (282)
T TIGR01859 68 LIERMSIVPVALHLDHGSSYESCIKAIKAGFSSVMIDGSHLPFEENLALTKKVVEIAHAKGV 129 (282)
T ss_pred HHHHCCCCeEEEECCCCCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 444555 565554221224554444432 33344443111 12334555555555554
No 158
>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit. The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions.
Probab=28.44 E-value=1.5e+02 Score=30.20 Aligned_cols=67 Identities=21% Similarity=0.132 Sum_probs=44.8
Q ss_pred chhhHHHHHHHHhcCCceeec---CCCCCcHHHHHhhcC--CceeEEEeeecCHHHHHHHHHHHHHcCCcEEEEe
Q 024846 118 PEGEVATARAAASCNTIMVLS---FTSSSSIEEVAASCN--AVRFYQLYVFKKRDIAATLVQRAERNGFKALVLT 187 (261)
Q Consensus 118 p~gE~alArAA~~~Gi~~~lS---s~ss~sleeIa~~~~--~~~wfQLy~~~dr~~~~~li~rAe~aG~~AlvvT 187 (261)
..|+.++|.||.++|+-+..+ |-+|.=+|.+++..+ +..+.| ..|.-......-=|--+|++|+.-|
T Consensus 196 l~GNeAvA~ga~~ag~~~~~~YPiTPsTei~e~la~~~~~~~~~~~q---~E~E~aA~~~a~GAs~aG~Ra~taT 267 (562)
T TIGR03710 196 ISGNEAIALGAIAAGLRFYAAYPITPASDILEFLAKHLKKFGVVVVQ---AEDEIAAINMAIGASYAGARAMTAT 267 (562)
T ss_pred eehHHHHHHHHHHhCCceecccCCCChhHHHHHHHHhhhhhCcEEEe---eccHHHHHHHHHhHHhcCCceeecC
Confidence 579999999999999987776 334333455555432 344333 4666666777777778888876544
No 159
>PF01068 DNA_ligase_A_M: ATP dependent DNA ligase domain; InterPro: IPR012310 DNA ligase (polydeoxyribonucleotide synthase) is the enzyme that joins two DNA fragments by catalysing the formation of an internucleotide ester bond between phosphate and deoxyribose. It is active during DNA replication, DNA repair and DNA recombination. There are two forms of DNA ligase, one requires ATP (6.5.1.1 from EC), the other NAD (6.5.1.2 from EC), the latter being restricted to eubacteria. Eukaryotic, archaebacterial, viral and some eubacterial DNA ligases are ATP-dependent. The first step in the ligation reaction is the formation of a covalent enzyme-AMP complex. The co-factor ATP is cleaved to pyrophosphate and AMP, with the AMP being covalently joined to a highly conserved lysine residue in the active site of the ligase. The activated AMP residue is then transferred to the 5'phosphate of the nick, before the nick is sealed by phosphodiester-bond formation and AMP elimination [,]. Vertebrate cells encode three well-characterised DNA ligases (DNA ligases I, III and IV), all of which are related in structure and sequence. With the exception of the atypically small PBCV-1 viral enzyme, two regions of primary sequence are common to all members of the family. The catalytic region comprises six conserved sequence motifs (I, III, IIIa, IV, V-VI), motif I includes the lysine residue that is adenylated in the first step of the ligation reaction. The function of the second, less well-conserved region is unknown. When folded, each protein comprises of two distinct sub-domains: a large amino-terminal sub-domain ('domain 1') and a smaller carboxy-terminal sub-domain ('domain 2'). The ATP-binding site of the enzyme lies in the cleft between the two sub-domains. Domain 1 consists of two antiparallel beta sheets flanked by alpha helices, whereas domain 2 consists of a five-stranded beta barrel and a single alpha helix, which form the oligonucleotide-binding fold [, ]. This domain belongs to a more diverse superfamily, including catalytic domain of the mRNA capping enzyme (IPR001339 from INTERPRO) and NAD-dependent DNA ligase (IPR001679 from INTERPRO) []. ; GO: 0003910 DNA ligase (ATP) activity, 0005524 ATP binding, 0006281 DNA repair, 0006310 DNA recombination; PDB: 3RR5_A 1X9N_A 2CFM_A 3QWU_B 3GDE_A 2Q2U_C 2Q2T_A 1FVI_A 1P8L_A 2VUG_A ....
Probab=28.04 E-value=1.9e+02 Score=24.39 Aligned_cols=43 Identities=33% Similarity=0.596 Sum_probs=34.3
Q ss_pred CceeEEEeeecCHHHHHHHHHHHHHcCCcEEEE-eecCCCC-CCc
Q 024846 154 AVRFYQLYVFKKRDIAATLVQRAERNGFKALVL-TADTPRL-GRR 196 (261)
Q Consensus 154 ~~~wfQLy~~~dr~~~~~li~rAe~aG~~Alvv-TVD~p~~-G~R 196 (261)
.+...+.+.-.+.+...++.+++.+.|...+|+ ..|++.- |+|
T Consensus 150 ~i~~~~~~~~~~~~~~~~~~~~~~~~g~EG~v~K~~~~~Y~~Gkr 194 (202)
T PF01068_consen 150 RIRIVESYVVNSKEELEELFEEAIDQGFEGLVLKDPDSPYEPGKR 194 (202)
T ss_dssp SEEEEEEEEESSHHHHHHHHHHHHHTTSSEEEEEETTSSC-TTEE
T ss_pred ceeEeeeecCCCHHHHHHHHHHHHHcCCceEEEECCCCccCCCCc
Confidence 344555566778899999999999999999999 6898875 566
No 160
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=27.64 E-value=58 Score=29.86 Aligned_cols=18 Identities=33% Similarity=0.449 Sum_probs=15.1
Q ss_pred cceeeCCcccCcceeecc
Q 024846 92 LSTTILDYKISAPIIIAP 109 (261)
Q Consensus 92 tsttllG~~ls~Pi~iAP 109 (261)
++|+++|.++.-||++|.
T Consensus 2 L~~~~~Gl~l~nPi~~as 19 (295)
T PF01180_consen 2 LSTNFCGLTLKNPIGLAS 19 (295)
T ss_dssp G-EEETTEEESSSEEE-T
T ss_pred ccEEECCEEcCCCcEECC
Confidence 689999999999999975
No 161
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=27.40 E-value=1.8e+02 Score=27.05 Aligned_cols=27 Identities=33% Similarity=0.368 Sum_probs=19.9
Q ss_pred ecCHHHHHHHHHHH---HHcCCcEEEEeec
Q 024846 163 FKKRDIAATLVQRA---ERNGFKALVLTAD 189 (261)
Q Consensus 163 ~~dr~~~~~li~rA---e~aG~~AlvvTVD 189 (261)
-++.+...++|+|| ++||+.+|++-.=
T Consensus 153 grt~~~a~~~i~~A~a~e~AGA~~ivlE~v 182 (263)
T TIGR00222 153 GKDEEAAKKLLEDALALEEAGAQLLVLECV 182 (263)
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 34556667888888 5699999988643
No 162
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=27.29 E-value=92 Score=29.57 Aligned_cols=44 Identities=18% Similarity=0.172 Sum_probs=0.0
Q ss_pred CCCCCCcceeeCCcccCcceeeccccccccCCchhhHHHHHHHHhcCCceee
Q 024846 86 DVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVL 137 (261)
Q Consensus 86 dv~~~DtsttllG~~ls~Pi~iAP~g~~~l~hp~gE~alArAA~~~Gi~~~l 137 (261)
....+ ++|+++|.++..||++|. ..++.....+...++|.-+++
T Consensus 41 ~~~~~-L~~~~~Gl~l~NPi~lAs-------G~~~~~~~~~~~~~~G~Gavv 84 (335)
T TIGR01036 41 GASDP-LEVTVLGLKFPNPLGLAA-------GFDKDGEAIDALGAMGFGFLE 84 (335)
T ss_pred cCCCC-CcEEECCEECCCCcEeCC-------ccCCCHHHHHHHHhcCCCEEE
No 163
>cd08568 GDPD_TmGDE_like Glycerophosphodiester phosphodiesterase domain of Thermotoga maritime and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermotoga maritime glycerophosphodiester phosphodiesterase (TmGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. TmGDE exists as a monomer that might be the biologically relevant form.
Probab=27.20 E-value=1.9e+02 Score=25.25 Aligned_cols=22 Identities=23% Similarity=0.460 Sum_probs=19.5
Q ss_pred HHHHHHHHHcCCcEEEEeecCC
Q 024846 170 ATLVQRAERNGFKALVLTADTP 191 (261)
Q Consensus 170 ~~li~rAe~aG~~AlvvTVD~p 191 (261)
.+++++++++|.+..+.|||.+
T Consensus 184 ~~~v~~~~~~G~~v~~WTvn~~ 205 (226)
T cd08568 184 VELLRLLRKLGLKIVLWTVNDP 205 (226)
T ss_pred HHHHHHHHHCCCEEEEEcCCCH
Confidence 6888999999999999999976
No 164
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=27.12 E-value=2.5e+02 Score=26.25 Aligned_cols=58 Identities=14% Similarity=0.174 Sum_probs=34.8
Q ss_pred HHHHHHHHhcCCceeecCCCCC--cHHHHHhhcCCceeE-EEeeecCHHHHHHHHHHHHHcCCcEEEEee
Q 024846 122 VATARAAASCNTIMVLSFTSSS--SIEEVAASCNAVRFY-QLYVFKKRDIAATLVQRAERNGFKALVLTA 188 (261)
Q Consensus 122 ~alArAA~~~Gi~~~lSs~ss~--sleeIa~~~~~~~wf-QLy~~~dr~~~~~li~rAe~aG~~AlvvTV 188 (261)
....+.+.+.|++++.-+.... -++.+.+. +...+ ++ -+.+..++++++|+.+|+++-
T Consensus 77 ~~~~~~~~~~~v~~v~~~~g~p~~~i~~lk~~--g~~v~~~v-------~s~~~a~~a~~~GaD~Ivv~g 137 (307)
T TIGR03151 77 DELVDLVIEEKVPVVTTGAGNPGKYIPRLKEN--GVKVIPVV-------ASVALAKRMEKAGADAVIAEG 137 (307)
T ss_pred HHHHHHHHhCCCCEEEEcCCCcHHHHHHHHHc--CCEEEEEc-------CCHHHHHHHHHcCCCEEEEEC
Confidence 4566777788988876544321 12333333 33322 22 124567899999999999854
No 165
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=26.81 E-value=1.6e+02 Score=24.97 Aligned_cols=81 Identities=17% Similarity=0.316 Sum_probs=44.2
Q ss_pred ccCcceeeccccccccCCchhhHHHHHHHHhcCCceeecCCC-CCcHHHHHhhcCCceeEEEeeecCHHHHHHHHHHHHH
Q 024846 100 KISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTS-SSSIEEVAASCNAVRFYQLYVFKKRDIAATLVQRAER 178 (261)
Q Consensus 100 ~ls~Pi~iAP~g~~~l~hp~gE~alArAA~~~Gi~~~lSs~s-s~sleeIa~~~~~~~wfQLy~~~dr~~~~~li~rAe~ 178 (261)
.++.||.-=|+++..+ -.++.++-...+-..+++... ...++.+....+ .. +..|...+.+.+...++++++
T Consensus 51 ~~~iPVV~I~~s~~Di-----l~al~~a~~~~~~Iavv~~~~~~~~~~~~~~ll~-~~-i~~~~~~~~~e~~~~i~~~~~ 123 (176)
T PF06506_consen 51 HVSIPVVEIPISGFDI-----LRALAKAKKYGPKIAVVGYPNIIPGLESIEELLG-VD-IKIYPYDSEEEIEAAIKQAKA 123 (176)
T ss_dssp C-SS-EEEE---HHHH-----HHHHHHCCCCTSEEEEEEESS-SCCHHHHHHHHT--E-EEEEEESSHHHHHHHHHHHHH
T ss_pred hCCCCEEEECCCHhHH-----HHHHHHHHhcCCcEEEEecccccHHHHHHHHHhC-Cc-eEEEEECCHHHHHHHHHHHHH
Confidence 3456777666543322 345555443333333344332 244777776654 22 246777889999999999999
Q ss_pred cCCcEEEEe
Q 024846 179 NGFKALVLT 187 (261)
Q Consensus 179 aG~~AlvvT 187 (261)
.|++.++=.
T Consensus 124 ~G~~viVGg 132 (176)
T PF06506_consen 124 EGVDVIVGG 132 (176)
T ss_dssp TT--EEEES
T ss_pred cCCcEEECC
Confidence 999887643
No 166
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=26.58 E-value=84 Score=29.76 Aligned_cols=85 Identities=13% Similarity=0.051 Sum_probs=0.0
Q ss_pred HHHHHhhcC-CceeEEEeeecCHHH--HHHHHHHHHHcCCcEEEEeecCCCCCCchhHhhcCCCCC--Cccccccccccc
Q 024846 145 IEEVAASCN-AVRFYQLYVFKKRDI--AATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITP--PLKNLEGLLSTK 219 (261)
Q Consensus 145 leeIa~~~~-~~~wfQLy~~~dr~~--~~~li~rAe~aG~~AlvvTVD~p~~G~Rerd~r~~f~~P--~~~~l~~~~~~~ 219 (261)
++++.++.+ -+--.=+-.-+|... ..++.+.++++|+.+|.||..+...+.... .. ....+++....
T Consensus 127 v~a~~~av~~iPVTVKiRlG~d~~~~~~~~ia~~~~~~g~~~ltVHgRtr~~~y~~~-------ad~~~I~~vk~~~~~- 198 (323)
T COG0042 127 VKAMVEAVGDIPVTVKIRLGWDDDDILALEIARILEDAGADALTVHGRTRAQGYLGP-------ADWDYIKELKEAVPS- 198 (323)
T ss_pred HHHHHHhhCCCCeEEEEecccCcccccHHHHHHHHHhcCCCEEEEecccHHhcCCCc-------cCHHHHHHHHHhCCC-
Q ss_pred cc-cccccccCcccch-hhh
Q 024846 220 VS-SVRILKLMPRDHG-CFF 237 (261)
Q Consensus 220 ~~-~~~k~~m~~~d~~-~~~ 237 (261)
++ .....|-|++|+. |.+
T Consensus 199 ipvi~NGdI~s~~~a~~~l~ 218 (323)
T COG0042 199 IPVIANGDIKSLEDAKEMLE 218 (323)
T ss_pred CeEEeCCCcCCHHHHHHHHH
No 167
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=26.55 E-value=1.6e+02 Score=27.51 Aligned_cols=17 Identities=24% Similarity=0.239 Sum_probs=9.4
Q ss_pred HHHHHHHHhcCCceeec
Q 024846 122 VATARAAASCNTIMVLS 138 (261)
Q Consensus 122 ~alArAA~~~Gi~~~lS 138 (261)
.++.+||++.+.|.++.
T Consensus 32 ~avi~aAe~~~sPvIlq 48 (293)
T PRK07315 32 QAILRAAEAKKAPVLIQ 48 (293)
T ss_pred HHHHHHHHHHCCCEEEE
Confidence 45555555555555554
No 168
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=26.52 E-value=80 Score=31.52 Aligned_cols=28 Identities=36% Similarity=0.354 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHcCCcEEEEeecCCCC
Q 024846 166 RDIAATLVQRAERNGFKALVLTADTPRL 193 (261)
Q Consensus 166 r~~~~~li~rAe~aG~~AlvvTVD~p~~ 193 (261)
-+...+-+++|++.++.++++.+|+|+.
T Consensus 42 ~~~l~r~l~~A~~~~a~~vvl~ldTPGG 69 (436)
T COG1030 42 ADYLQRALQSAEEENAAAVVLELDTPGG 69 (436)
T ss_pred HHHHHHHHHHHHhCCCcEEEEEecCCCc
Confidence 3455777899999999999999999984
No 169
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=26.39 E-value=3.3e+02 Score=26.07 Aligned_cols=84 Identities=14% Similarity=0.094 Sum_probs=47.5
Q ss_pred CcceeeccccccccCCchhhHHHHHHHHhcCCceeecCCCCCcHHHH-------Hhh-cCCceeEEEeeecCHHHHHHHH
Q 024846 102 SAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEV-------AAS-CNAVRFYQLYVFKKRDIAATLV 173 (261)
Q Consensus 102 s~Pi~iAP~g~~~l~hp~gE~alArAA~~~Gi~~~lSs~ss~sleeI-------a~~-~~~~~wfQLy~~~dr~~~~~li 173 (261)
..||+-+||+... ....+|.|..++|-.-+++... .+.|++ ++. ...+.-.-|..+.+.....+.+
T Consensus 2 ~yPIiqgpM~~vs-----~~~~LaaAVS~AGgLG~la~~~-~~~e~l~~~i~~~~~l~tdkPfGVnl~~~~~~~~~~~~l 75 (320)
T cd04743 2 RYPIVQGPMTRVS-----DVAEFAVAVAEGGGLPFIALAL-MRGEQVKALLEETAELLGDKPWGVGILGFVDTELRAAQL 75 (320)
T ss_pred CCCEECCCcCCCC-----CcHHHHHHHHhCCccccCCCCC-CCHHHHHHHHHHHHHhccCCCeEEEEeccCCCcchHHHH
Confidence 4799999986542 1246777888888777777543 334432 231 2222222232222223345677
Q ss_pred HHHHHcCCcEEEEeecCC
Q 024846 174 QRAERNGFKALVLTADTP 191 (261)
Q Consensus 174 ~rAe~aG~~AlvvTVD~p 191 (261)
+-+.+.+.+.++++--.|
T Consensus 76 ~vi~e~~v~~V~~~~G~P 93 (320)
T cd04743 76 AVVRAIKPTFALIAGGRP 93 (320)
T ss_pred HHHHhcCCcEEEEcCCCh
Confidence 777777887777765444
No 170
>PRK03732 hypothetical protein; Provisional
Probab=26.17 E-value=80 Score=25.78 Aligned_cols=27 Identities=19% Similarity=0.228 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHcCCcEEE-EeecCCC
Q 024846 166 RDIAATLVQRAERNGFKALV-LTADTPR 192 (261)
Q Consensus 166 r~~~~~li~rAe~aG~~Alv-vTVD~p~ 192 (261)
++.+.+|.++|++.|+.||+ |.+|...
T Consensus 66 ~~A~~rm~~~A~~lGAnAVVgvr~d~s~ 93 (114)
T PRK03732 66 EEALRRMALHAKELGANAVVNFRFATSN 93 (114)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEEEehh
Confidence 45568999999999999976 5555543
No 171
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=26.08 E-value=48 Score=30.93 Aligned_cols=99 Identities=16% Similarity=0.135 Sum_probs=0.0
Q ss_pred hHHHHhhhhHHHHhhhhhccccCCcCCCCCCCHHHHHHHHHhhCChhhhhhhcCCccchhcHHHHHHHhhcccccccccc
Q 024846 6 LCMQYVASGIDLLEKLINVHVCRFQMAAEPVNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILV 85 (261)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~e~~Ar~~Lp~~~~~Y~~gGa~de~T~~~N~~Af~ri~L~pRvL~ 85 (261)
+|.|| |+|.....-.-|.+=--...++++|+.-.|++.+....-..+..=-|.-.++.+|.-.|..+-+..
T Consensus 110 n~rn~-----~LL~a~g~t~kpV~lKrG~~~t~~e~~~aaeyi~~~Gn~~vilcERG~tf~y~r~~~D~~~vp~~k---- 180 (264)
T PRK05198 110 LCRQT-----DLLVAAAKTGKVVNIKKGQFLAPWDMKNVVDKVREAGNDKIILCERGTSFGYNNLVVDMRGLPIMR---- 180 (264)
T ss_pred hcchH-----HHHHHHhccCCeEEecCCCcCCHHHHHHHHHHHHHcCCCeEEEEeCCCCcCCCCeeechhhhHHHh----
Q ss_pred CCCCCCcceeeCCcccCcceeeccccccccCCc-----------hhh----HHHHHHHHhcCC
Q 024846 86 DVSRIDLSTTILDYKISAPIIIAPTALHKLANP-----------EGE----VATARAAASCNT 133 (261)
Q Consensus 86 dv~~~DtsttllG~~ls~Pi~iAP~g~~~l~hp-----------~gE----~alArAA~~~Gi 133 (261)
+...||++=|+ |. .|. ..+|+||-++|+
T Consensus 181 --------------~~~lPVi~DpS------Hsvq~pg~~~~~s~G~r~~v~~la~AAvA~Ga 223 (264)
T PRK05198 181 --------------ETGAPVIFDAT------HSVQLPGGQGGSSGGQREFVPVLARAAVAVGV 223 (264)
T ss_pred --------------hCCCCEEEeCC------ccccCCCCCCCCCCCcHHHHHHHHHHHHHcCC
No 172
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]
Probab=25.83 E-value=70 Score=29.93 Aligned_cols=28 Identities=36% Similarity=0.515 Sum_probs=22.6
Q ss_pred HHHHH-HHcCCcEEEEeecCCCCCCchhH
Q 024846 172 LVQRA-ERNGFKALVLTADTPRLGRREAD 199 (261)
Q Consensus 172 li~rA-e~aG~~AlvvTVD~p~~G~Rerd 199 (261)
+...| +.+|=.++.||||+|..-+|+..
T Consensus 33 La~la~~~lG~~v~AvTv~sP~~p~~e~e 61 (269)
T COG1606 33 LAKLAKEALGDNVVAVTVDSPYIPRREIE 61 (269)
T ss_pred HHHHHHHHhccceEEEEEecCCCChhhhh
Confidence 34445 67899999999999999888764
No 173
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=25.72 E-value=3.1e+02 Score=25.47 Aligned_cols=103 Identities=15% Similarity=0.214 Sum_probs=56.4
Q ss_pred CCCHHHHHHHHHhhC-ChhhhhhhcCCccchhcHHHHHHHhhccccccccccCCCCCCcceeeCCcccCcceee------
Q 024846 35 PVNLNEFQELARLAL-PKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIII------ 107 (261)
Q Consensus 35 ~~~l~D~e~~Ar~~L-p~~~~~Y~~gGa~de~T~~~N~~Af~ri~L~pRvL~dv~~~DtsttllG~~ls~Pi~i------ 107 (261)
.+++.|+-+.|++.= .=.+|+.+ +-.+.+.=.+|-++.+ .| ++-.+++.. ....|.++-.+++.
T Consensus 3 lv~~~~~l~~A~~~~yaV~Afn~~-----n~e~~~avi~aAe~~~-~P-vii~~~~~~--~~~~~~~~~~~~~~~~a~~~ 73 (281)
T PRK06806 3 LVQMKELLKKANQENYGVGAFSVA-----NMEMVMGAIKAAEELN-SP-IILQIAEVR--LNHSPLHLIGPLMVAAAKQA 73 (281)
T ss_pred CCcHHHHHHHHHHCCceEEEEEeC-----CHHHHHHHHHHHHHhC-CC-EEEEcCcch--hccCChHHHHHHHHHHHHHC
Confidence 567888888888742 11123332 4456777777777755 34 333433211 12223222111111
Q ss_pred -ccccccccCCchhhHHHHHHHHhcCCceeecCCCCCcHHHH
Q 024846 108 -APTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEV 148 (261)
Q Consensus 108 -AP~g~~~l~hp~gE~alArAA~~~Gi~~~lSs~ss~sleeI 148 (261)
-|++.| |-|- .....++.|-+.|.-.+.=..++.+.+|.
T Consensus 74 ~vpv~lH-lDH~-~~~e~i~~Al~~G~tsVm~d~s~~~~~en 113 (281)
T PRK06806 74 KVPVAVH-FDHG-MTFEKIKEALEIGFTSVMFDGSHLPLEEN 113 (281)
T ss_pred CCCEEEE-CCCC-CCHHHHHHHHHcCCCEEEEcCCCCCHHHH
Confidence 144444 3452 36778888888898777767777777764
No 174
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=25.54 E-value=4.7e+02 Score=25.15 Aligned_cols=13 Identities=23% Similarity=0.337 Sum_probs=6.2
Q ss_pred HHHHHHHHHcCCc
Q 024846 170 ATLVQRAERNGFK 182 (261)
Q Consensus 170 ~~li~rAe~aG~~ 182 (261)
.+.++.|++.|..
T Consensus 119 ~~~v~~a~~~G~~ 131 (378)
T PRK11858 119 VEAVEYAKDHGLY 131 (378)
T ss_pred HHHHHHHHHCCCe
Confidence 3444455555543
No 175
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=25.48 E-value=1.9e+02 Score=29.49 Aligned_cols=71 Identities=21% Similarity=0.197 Sum_probs=47.5
Q ss_pred hhhHHHHHHHHhcCCceeec---CCCCCcHHHHHhhcC--CceeEEEeeecCHHHHHHHHHHHHHcCCcEEEEeecCCCC
Q 024846 119 EGEVATARAAASCNTIMVLS---FTSSSSIEEVAASCN--AVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRL 193 (261)
Q Consensus 119 ~gE~alArAA~~~Gi~~~lS---s~ss~sleeIa~~~~--~~~wfQLy~~~dr~~~~~li~rAe~aG~~AlvvTVD~p~~ 193 (261)
.|+.++|+|+.++|+-++.+ |-+|.=+|.+++..+ +....| ..|.....+..-=|-.+|+++++-|= .+++
T Consensus 6 ~GneA~A~g~~~ag~~~~~~YPiTP~t~i~e~l~~~~~~~~~~~~~---~~~E~~a~~~~~GAs~aG~ra~t~ts-~~Gl 81 (595)
T TIGR03336 6 LGNEAIARGALEAGVGVAAAYPGTPSSEITDTLAKVAKRAGVYFEW---SVNEKVAVEVAAGAAWSGLRAFCTMK-HVGL 81 (595)
T ss_pred cHHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHHHhhhhccEEEEE---CcCHHHHHHHHHHHHhcCcceEEEcc-CCch
Confidence 68999999999999888776 233333344554443 333222 34666667777778889999988876 5555
No 176
>PLN02858 fructose-bisphosphate aldolase
Probab=25.38 E-value=1.3e+02 Score=34.15 Aligned_cols=62 Identities=16% Similarity=0.183 Sum_probs=33.0
Q ss_pred HHHHHHHHhcCCceeecCCCC----CcHH------HHHhhcCCceeEEEeeecCHHHHHHHHHHHHHcCCcEEEEe
Q 024846 122 VATARAAASCNTIMVLSFTSS----SSIE------EVAASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLT 187 (261)
Q Consensus 122 ~alArAA~~~Gi~~~lSs~ss----~sle------eIa~~~~~~~wfQLy~~~dr~~~~~li~rAe~aG~~AlvvT 187 (261)
.++.+||++.+.|.++..... .+++ ..++...-+ +.+.-|.....+.+.+|-++||.-++++
T Consensus 1128 ~avi~aAe~~~sPvIl~~~~~~~~~~~~~~~~~~~~~a~~~~vp----V~lHLDHg~~~~~i~~ai~~Gf~SVM~D 1199 (1378)
T PLN02858 1128 EAVVAAAEAEKSPAILQVHPGALKQGGIPLVSCCIAAAEQASVP----ITVHFDHGTSKHELLEALELGFDSVMVD 1199 (1378)
T ss_pred HHHHHHHHHhCCCEEEECCccHHhhcCHHHHHHHHHHHHHCCCC----EEEECCCCCCHHHHHHHHHhCCCEEEEe
Confidence 567777777777777764321 1222 111212212 3334466656666777777777766654
No 177
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=25.15 E-value=5.6e+02 Score=23.80 Aligned_cols=72 Identities=10% Similarity=0.001 Sum_probs=40.0
Q ss_pred CCchhhHHHHHHHHhcCCceee--cC---CCCCcHHHHH-------hhcCC-c-eeEEEeeecCHHHHHHHHHHHHHcCC
Q 024846 116 ANPEGEVATARAAASCNTIMVL--SF---TSSSSIEEVA-------ASCNA-V-RFYQLYVFKKRDIAATLVQRAERNGF 181 (261)
Q Consensus 116 ~hp~gE~alArAA~~~Gi~~~l--Ss---~ss~sleeIa-------~~~~~-~-~wfQLy~~~dr~~~~~li~rAe~aG~ 181 (261)
.+.++=..+++-..+.|+-.++ || ..+-+.||-. +..++ . ....+- ..+-+.+.++.+.|+++|+
T Consensus 26 iD~~~l~~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~-~~~t~~ai~~a~~A~~~Ga 104 (309)
T cd00952 26 VDLDETARLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVFVGAT-TLNTRDTIARTRALLDLGA 104 (309)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEec-cCCHHHHHHHHHHHHHhCC
Confidence 3444445666666666755433 33 2334555421 22222 2 222221 2355677888899999999
Q ss_pred cEEEEee
Q 024846 182 KALVLTA 188 (261)
Q Consensus 182 ~AlvvTV 188 (261)
.++++.-
T Consensus 105 d~vlv~~ 111 (309)
T cd00952 105 DGTMLGR 111 (309)
T ss_pred CEEEECC
Confidence 9988875
No 178
>PRK02227 hypothetical protein; Provisional
Probab=24.49 E-value=3.6e+02 Score=24.85 Aligned_cols=109 Identities=17% Similarity=0.075 Sum_probs=60.0
Q ss_pred CCchhhHHHHHHHHhcCCcee-ecCCCCCcH----HHH---H----hhcCCceeEEEeeecCHH-----HHHHHHHHHHH
Q 024846 116 ANPEGEVATARAAASCNTIMV-LSFTSSSSI----EEV---A----ASCNAVRFYQLYVFKKRD-----IAATLVQRAER 178 (261)
Q Consensus 116 ~hp~gE~alArAA~~~Gi~~~-lSs~ss~sl----eeI---a----~~~~~~~wfQLy~~~dr~-----~~~~li~rAe~ 178 (261)
.+|+.=...+.+++..|+-|+ +|-+..... |.+ . ...++..|+-.. +-|.. -..++++.+.+
T Consensus 64 ~~p~~~~~aa~~~a~~GvDyVKvGl~~~~~~~~~~~~~~~v~~a~~~~~~~~~vVav~-yaD~~r~~~~~~~~l~~~a~~ 142 (238)
T PRK02227 64 YKPGTISLAALGAAATGADYVKVGLYGGKTAEEAVEVMKAVVRAVKDLDPGKIVVAAG-YADAHRVGSVSPLSLPAIAAD 142 (238)
T ss_pred CCchHHHHHHHHHHhhCCCEEEEcCCCCCcHHHHHHHHHHHHHhhhhcCCCCeEEEEE-ecccccccCCChHHHHHHHHH
Confidence 355223455667777888776 554322222 222 1 122344455433 23332 34688999999
Q ss_pred cCCcEEEEeecCCCCCCchhHhhcCCCCC---Cccccccccc----cccccccccccCcccchh
Q 024846 179 NGFKALVLTADTPRLGRREADIKNKMITP---PLKNLEGLLS----TKVSSVRILKLMPRDHGC 235 (261)
Q Consensus 179 aG~~AlvvTVD~p~~G~Rerd~r~~f~~P---~~~~l~~~~~----~~~~~~~k~~m~~~d~~~ 235 (261)
+||..++| ||.. +++-++. +...|.+++. .++....-|-+..+|+.-
T Consensus 143 aGf~g~Ml--DTa~--------Kdg~~Lfd~l~~~~L~~Fv~~ar~~Gl~~gLAGSL~~~dip~ 196 (238)
T PRK02227 143 AGFDGAML--DTAI--------KDGKSLFDHMDEEELAEFVAEARSHGLMSALAGSLKFEDIPA 196 (238)
T ss_pred cCCCEEEE--eccc--------CCCcchHhhCCHHHHHHHHHHHHHcccHhHhcccCchhhHHH
Confidence 99998877 6655 3333332 4555555543 256666677777777653
No 179
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=24.36 E-value=1.3e+02 Score=29.11 Aligned_cols=25 Identities=28% Similarity=0.416 Sum_probs=18.7
Q ss_pred cCHHHHHHHHHHH---HHcCCcEEEEee
Q 024846 164 KKRDIAATLVQRA---ERNGFKALVLTA 188 (261)
Q Consensus 164 ~dr~~~~~li~rA---e~aG~~AlvvTV 188 (261)
++.+..++++++| ++||+.+|++-.
T Consensus 176 r~~~~a~~li~dA~ale~AGAf~ivLE~ 203 (332)
T PLN02424 176 RTAESAVKVVETALALQEAGCFAVVLEC 203 (332)
T ss_pred CCHHHHHHHHHHHHHHHHcCCcEEEEcC
Confidence 3556667888877 679999999854
No 180
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=24.17 E-value=1.8e+02 Score=26.53 Aligned_cols=94 Identities=14% Similarity=0.179 Sum_probs=57.3
Q ss_pred eeeCCcccCcceeeccccccccCCchhh-HHHHHHHHhcCCceeecC-CCC----CcHHHHHhhcCCceeEEEeeecCHH
Q 024846 94 TTILDYKISAPIIIAPTALHKLANPEGE-VATARAAASCNTIMVLSF-TSS----SSIEEVAASCNAVRFYQLYVFKKRD 167 (261)
Q Consensus 94 ttllG~~ls~Pi~iAP~g~~~l~hp~gE-~alArAA~~~Gi~~~lSs-~ss----~sleeIa~~~~~~~wfQLy~~~dr~ 167 (261)
+.+.+.-+..|++...+.+.. +-| ..++++-...++-.+++- ..+ .-+|-|+...+-....+| |.+|+
T Consensus 51 ~~~~Ae~~gi~l~~~~~~g~~----e~eve~L~~~l~~l~~d~iv~GaI~s~yqk~rve~lc~~lGl~~~~PL-Wg~d~- 124 (223)
T COG2102 51 AELQAEAMGIPLVTFDTSGEE----EREVEELKEALRRLKVDGIVAGAIASEYQKERVERLCEELGLKVYAPL-WGRDP- 124 (223)
T ss_pred HHHHHHhcCCceEEEecCccc----hhhHHHHHHHHHhCcccEEEEchhhhHHHHHHHHHHHHHhCCEEeecc-cCCCH-
Confidence 345666677788888876632 222 456666666665444432 111 345667766542222222 22343
Q ss_pred HHHHHHHHHHHcCCcEEEEeecCCCCCC
Q 024846 168 IAATLVQRAERNGFKALVLTADTPRLGR 195 (261)
Q Consensus 168 ~~~~li~rAe~aG~~AlvvTVD~p~~G~ 195 (261)
.++++.--.+|+++++|-|++..++.
T Consensus 125 --~ell~e~~~~Gf~~~Iv~Vsa~gL~~ 150 (223)
T COG2102 125 --EELLEEMVEAGFEAIIVAVSAEGLDE 150 (223)
T ss_pred --HHHHHHHHHcCCeEEEEEEeccCCCh
Confidence 46777778899999999999999874
No 181
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=24.12 E-value=1.4e+02 Score=28.04 Aligned_cols=22 Identities=14% Similarity=0.267 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHcCCcEEEEee
Q 024846 167 DIAATLVQRAERNGFKALVLTA 188 (261)
Q Consensus 167 ~~~~~li~rAe~aG~~AlvvTV 188 (261)
+...+++++++++|+.+|.|+-
T Consensus 148 ~~~~~~a~~l~~~Gvd~i~Vh~ 169 (312)
T PRK10550 148 ERKFEIADAVQQAGATELVVHG 169 (312)
T ss_pred hHHHHHHHHHHhcCCCEEEECC
Confidence 4467999999999999998873
No 182
>cd07896 Adenylation_kDNA_ligase_like Adenylation domain of kDNA ligases and similar proteins. The mitochondrial DNA of parasitic protozoans is highly unusual. It is termed the kinetoplast DNA (kDNA) and consists of circular DNA molecules (maxicircles) and several thousand smaller circular molecules (minicircles). This group is composed of kDNA ligase, Chlorella virus DNA ligase, and similar proteins. kDNA ligase and Chlorella virus DNA ligase are the smallest known ATP-dependent ligases. They are involved in DNA replication or repair. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. They have a highly modular architecture consisting of a unique arrangement of two or more discrete domains. The adenylation and the C-terminal oligonucleotide/oligosaccharide binding (OB)-fold domains comprise a catalytic core unit that is common to most me
Probab=23.97 E-value=3e+02 Score=22.91 Aligned_cols=40 Identities=18% Similarity=0.194 Sum_probs=30.7
Q ss_pred EEEeeecCHHHHHHHHHHHHHcCCcEEEEe-ecCCCCCCch
Q 024846 158 YQLYVFKKRDIAATLVQRAERNGFKALVLT-ADTPRLGRRE 197 (261)
Q Consensus 158 fQLy~~~dr~~~~~li~rAe~aG~~AlvvT-VD~p~~G~Re 197 (261)
.+.+.-.+.+.+.++++++.+.|...||+- .|++..+.|.
T Consensus 126 ~~~~~~~~~~~i~~~~~~~~~~g~EGlv~K~~ds~Y~~gR~ 166 (174)
T cd07896 126 VPQIPVKSNEALDQYLDEVVAAGGEGLMLRRPDAPYETGRS 166 (174)
T ss_pred EeeeeeCCHHHHHHHHHHHHhcCCCeEEEecCCCcccCCcC
Confidence 344445677889999999999999999998 5777644443
No 183
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=23.88 E-value=81 Score=29.26 Aligned_cols=39 Identities=26% Similarity=0.329 Sum_probs=29.5
Q ss_pred CceeEEEeeecCHHHHHHHHHHHHHcCCcEEEEeecCCCCC
Q 024846 154 AVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLG 194 (261)
Q Consensus 154 ~~~wfQLy~~~dr~~~~~li~rAe~aG~~AlvvTVD~p~~G 194 (261)
+..-||+| |++.+..+-+++.|.+|||.. .|-||-|-..
T Consensus 154 ~raV~QfY-pen~~q~d~i~~~a~~aGF~G-GlvVd~Pes~ 192 (270)
T KOG1541|consen 154 ARAVLQFY-PENEAQIDMIMQQAMKAGFGG-GLVVDWPEST 192 (270)
T ss_pred ceeEEEec-ccchHHHHHHHHHHHhhccCC-ceeeeccccc
Confidence 56789988 567788888999999999854 5556776543
No 184
>PLN02775 Probable dihydrodipicolinate reductase
Probab=23.48 E-value=1.4e+02 Score=28.05 Aligned_cols=82 Identities=11% Similarity=0.175 Sum_probs=54.4
Q ss_pred hcCCccc-hhcHHHHHHHhhccccccccccCCCCCCcceeeCCcccCccee----------e----ccc-cccccCCchh
Q 024846 57 YAGGAED-EHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPII----------I----APT-ALHKLANPEG 120 (261)
Q Consensus 57 ~~gGa~d-e~T~~~N~~Af~ri~L~pRvL~dv~~~DtsttllG~~ls~Pi~----------i----AP~-g~~~l~hp~g 120 (261)
+.|..|. +.+..+-..+ +...|.+-+.+.-..-|..+++.|. ..|+. - -|- -..-+-||+.
T Consensus 16 V~Ga~G~MG~~~~~av~~-~~~~Lv~~~~~~~~~~~~~~~~~g~--~v~~~~~~dl~~~l~~~~~~~~~~VvIDFT~P~a 92 (286)
T PLN02775 16 VNGCTGKMGHAVAEAAVS-AGLQLVPVSFTGPAGVGVTVEVCGV--EVRLVGPSEREAVLSSVKAEYPNLIVVDYTLPDA 92 (286)
T ss_pred EECCCChHHHHHHHHHhc-CCCEEEEEeccccccccccceeccc--eeeeecCccHHHHHHHhhccCCCEEEEECCChHH
Confidence 3444433 3445556666 8888998777654444555678776 44444 1 132 2445678888
Q ss_pred hHHHHHHHHhcCCceeecCCC
Q 024846 121 EVATARAAASCNTIMVLSFTS 141 (261)
Q Consensus 121 E~alArAA~~~Gi~~~lSs~s 141 (261)
=...++.|.+.|++.++||-.
T Consensus 93 ~~~~~~~~~~~g~~~VvGTTG 113 (286)
T PLN02775 93 VNDNAELYCKNGLPFVMGTTG 113 (286)
T ss_pred HHHHHHHHHHCCCCEEEECCC
Confidence 899999999999999999754
No 185
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=23.41 E-value=2.1e+02 Score=26.18 Aligned_cols=31 Identities=13% Similarity=0.092 Sum_probs=26.2
Q ss_pred hHHHHHHHHhcCCceeecCCCCCcHHHHHhh
Q 024846 121 EVATARAAASCNTIMVLSFTSSSSIEEVAAS 151 (261)
Q Consensus 121 E~alArAA~~~Gi~~~lSs~ss~sleeIa~~ 151 (261)
+..+.+++++.|.|.++|+.-..+++|+..+
T Consensus 121 n~~LL~~~a~~gkPVilk~G~~~t~~e~~~A 151 (260)
T TIGR01361 121 NFELLKEVGKQGKPVLLKRGMGNTIEEWLYA 151 (260)
T ss_pred CHHHHHHHhcCCCcEEEeCCCCCCHHHHHHH
Confidence 3679999999999999999887788887654
No 186
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=23.32 E-value=87 Score=28.56 Aligned_cols=55 Identities=15% Similarity=0.206 Sum_probs=29.1
Q ss_pred hHHHHHHHHhcCCceeecCCCCCcHHHHHhhc------C--CceeE---EEeeecCHHHHHHHHHHH
Q 024846 121 EVATARAAASCNTIMVLSFTSSSSIEEVAASC------N--AVRFY---QLYVFKKRDIAATLVQRA 176 (261)
Q Consensus 121 E~alArAA~~~Gi~~~lSs~ss~sleeIa~~~------~--~~~wf---QLy~~~dr~~~~~li~rA 176 (261)
+..+.+.+++.|.|+++||+. .+++||..+. + .+..+ +-||-...+.....|..-
T Consensus 102 n~~lL~~~A~tgkPvIlSTG~-stl~EI~~Av~~~~~~~~~~l~llHC~s~YP~~~e~~NL~~i~~L 167 (241)
T PF03102_consen 102 NLPLLEYIAKTGKPVILSTGM-STLEEIERAVEVLREAGNEDLVLLHCVSSYPTPPEDVNLRVIPTL 167 (241)
T ss_dssp -HHHHHHHHTT-S-EEEE-TT---HHHHHHHHHHHHHHCT--EEEEEE-SSSS--GGG--TTHHHHH
T ss_pred CHHHHHHHHHhCCcEEEECCC-CCHHHHHHHHHHHHhcCCCCEEEEecCCCCCCChHHcChHHHHHH
Confidence 478999999999999999987 4688776531 1 22222 356656666655555444
No 187
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=23.32 E-value=5.7e+02 Score=23.27 Aligned_cols=80 Identities=16% Similarity=0.074 Sum_probs=46.9
Q ss_pred eeccccccccCCchhhHHHHHHHHhcCCcee--ecC---CCCCcHHHH-------HhhcCCceeEEEeeecCHHHHHHHH
Q 024846 106 IIAPTALHKLANPEGEVATARAAASCNTIMV--LSF---TSSSSIEEV-------AASCNAVRFYQLYVFKKRDIAATLV 173 (261)
Q Consensus 106 ~iAP~g~~~l~hp~gE~alArAA~~~Gi~~~--lSs---~ss~sleeI-------a~~~~~~~wfQLy~~~dr~~~~~li 173 (261)
++.|+-- +-.+.++=..+++-..+.|+-.+ +|| ..+-+.||- .+..+. ..+++- ..+-..+.++.
T Consensus 8 ~~TPf~~-g~iD~~~~~~li~~l~~~Gv~Gl~~~GstGE~~~Lt~eEr~~l~~~~~~~~~~-vi~gvg-~~~~~~ai~~a 84 (279)
T cd00953 8 VITPFTG-NKIDKEKFKKHCENLISKGIDYVFVAGTTGLGPSLSFQEKLELLKAYSDITDK-VIFQVG-SLNLEESIELA 84 (279)
T ss_pred eecCcCC-CCcCHHHHHHHHHHHHHcCCcEEEEcccCCCcccCCHHHHHHHHHHHHHHcCC-EEEEeC-cCCHHHHHHHH
Confidence 3566543 43455555677777777775543 333 233455542 222222 233432 23566778999
Q ss_pred HHHHHcCCcEEEEee
Q 024846 174 QRAERNGFKALVLTA 188 (261)
Q Consensus 174 ~rAe~aG~~AlvvTV 188 (261)
+.|+++|+.+++++.
T Consensus 85 ~~a~~~Gad~v~v~~ 99 (279)
T cd00953 85 RAAKSFGIYAIASLP 99 (279)
T ss_pred HHHHHcCCCEEEEeC
Confidence 999999999999875
No 188
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=23.18 E-value=2.5e+02 Score=25.96 Aligned_cols=25 Identities=36% Similarity=0.412 Sum_probs=18.6
Q ss_pred ecCHHHHHHHHHHH---HHcCCcEEEEe
Q 024846 163 FKKRDIAATLVQRA---ERNGFKALVLT 187 (261)
Q Consensus 163 ~~dr~~~~~li~rA---e~aG~~AlvvT 187 (261)
-++.+...++++|| ++||+.+|++-
T Consensus 154 grt~~~a~~~i~ra~a~~eAGA~~i~lE 181 (264)
T PRK00311 154 GRDEEAAEKLLEDAKALEEAGAFALVLE 181 (264)
T ss_pred cCCHHHHHHHHHHHHHHHHCCCCEEEEc
Confidence 34555567888888 56999999985
No 189
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=22.78 E-value=2.5e+02 Score=25.76 Aligned_cols=66 Identities=17% Similarity=0.081 Sum_probs=40.5
Q ss_pred hhhHHHHHHHHhcCCceeecCCCCCcHHHHHhh--------------------cC-CceeEEEeee----cCHHHHHHHH
Q 024846 119 EGEVATARAAASCNTIMVLSFTSSSSIEEVAAS--------------------CN-AVRFYQLYVF----KKRDIAATLV 173 (261)
Q Consensus 119 ~gE~alArAA~~~Gi~~~lSs~ss~sleeIa~~--------------------~~-~~~wfQLy~~----~dr~~~~~li 173 (261)
+|=..+.+.|++.|++++.+-....+++.+.+. +. +. .+.+. .+-+.+..-+
T Consensus 76 ~gl~~l~~~~~~~Gl~~~t~~~d~~~~~~l~~~~d~lkI~s~~~~n~~LL~~~a~~gk---PVilk~G~~~t~~e~~~Av 152 (260)
T TIGR01361 76 EGLKLLRRAADEHGLPVVTEVMDPRDVEIVAEYADILQIGARNMQNFELLKEVGKQGK---PVLLKRGMGNTIEEWLYAA 152 (260)
T ss_pred HHHHHHHHHHHHhCCCEEEeeCChhhHHHHHhhCCEEEECcccccCHHHHHHHhcCCC---cEEEeCCCCCCHHHHHHHH
Confidence 344667888888888888876665555554322 11 11 12222 2456667777
Q ss_pred HHHHHcCCcEEEEe
Q 024846 174 QRAERNGFKALVLT 187 (261)
Q Consensus 174 ~rAe~aG~~AlvvT 187 (261)
+...+.|.+-|+|+
T Consensus 153 e~i~~~Gn~~i~l~ 166 (260)
T TIGR01361 153 EYILSSGNGNVILC 166 (260)
T ss_pred HHHHHcCCCcEEEE
Confidence 77788898777774
No 190
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=22.71 E-value=83 Score=25.36 Aligned_cols=27 Identities=22% Similarity=0.389 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHcCCcEEEEeecCCCCC
Q 024846 168 IAATLVQRAERNGFKALVLTADTPRLG 194 (261)
Q Consensus 168 ~~~~li~rAe~aG~~AlvvTVD~p~~G 194 (261)
..++++++|.+.|++.|++|==....|
T Consensus 17 ~~~e~v~~A~~~Gl~~i~iTDH~~~~~ 43 (175)
T PF02811_consen 17 SPEEYVEQAKEKGLDAIAITDHNNFAG 43 (175)
T ss_dssp SHHHHHHHHHHTTESEEEEEEETTTTT
T ss_pred CHHHHHHHHHHcCCCEEEEcCCccccc
Confidence 357899999999999999984433333
No 191
>PF03599 CdhD: CO dehydrogenase/acetyl-CoA synthase delta subunit; InterPro: IPR016041 This entry represents a conserved region predicted to form a TIM alpha/beta barrel, and is found in the delta subunit of a number of CO dehydrogenase/acetyl-CoA synthase enzymes.; PDB: 2H9A_B 2YCL_B 4DJF_E 4DJD_C 4DJE_C.
Probab=22.70 E-value=2.7e+02 Score=27.46 Aligned_cols=86 Identities=20% Similarity=0.217 Sum_probs=50.1
Q ss_pred cCcceeeccccccccCCchhhHHHHHHHHhcCCceeecCCCCCcHHHHHhhc---CCceeEEEeeecCHHHHHHHHHHHH
Q 024846 101 ISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAASC---NAVRFYQLYVFKKRDIAATLVQRAE 177 (261)
Q Consensus 101 ls~Pi~iAP~g~~~l~hp~gE~alArAA~~~Gi~~~lSs~ss~sleeIa~~~---~~~~wfQLy~~~dr~~~~~li~rAe 177 (261)
...|+++.-. +++--.+.+++|+..+-+..-.+.. -.+++++.+ +.+. =+.-+.|-+..++|.+...
T Consensus 97 ~~~PLIL~~~------D~evl~aale~~~~~kpLL~aAt~e--Nyk~m~~lA~~y~~pl--~v~sp~Dln~lk~Ln~~l~ 166 (386)
T PF03599_consen 97 VDVPLILCGC------DPEVLKAALEACAGKKPLLYAATEE--NYKAMAALAKEYGHPL--IVSSPIDLNLLKQLNIKLT 166 (386)
T ss_dssp -SSEEEEESS------HHHHHHHHHHHTTTS--EEEEEBTT--THHHHHHHHHHCT-EE--EEE-SSCHHHHHHHHHHHH
T ss_pred cCCCEEEEeC------CHHHHHHHHHHhCcCCcEEeEcCHH--HHHHHHHHHHHcCCeE--EEEecccHHHHHHHHHHHH
Confidence 4678887543 3333356666666555555544444 466666554 3221 1233469999999999999
Q ss_pred HcCCcEEEEeecCCCCCCc
Q 024846 178 RNGFKALVLTADTPRLGRR 196 (261)
Q Consensus 178 ~aG~~AlvvTVD~p~~G~R 196 (261)
++|++-|||+.=+..+|.-
T Consensus 167 ~~Gv~dIVlDpgt~~lGyG 185 (386)
T PF03599_consen 167 ELGVKDIVLDPGTRALGYG 185 (386)
T ss_dssp TTT-GGEEEE---SSTTTT
T ss_pred hcCcccEEecCCcccchhH
Confidence 9999999999877765543
No 192
>COG2121 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.60 E-value=3.6e+02 Score=24.50 Aligned_cols=24 Identities=17% Similarity=0.242 Sum_probs=19.5
Q ss_pred CchhhHHHHHHHHhcCCceeecCCC
Q 024846 117 NPEGEVATARAAASCNTIMVLSFTS 141 (261)
Q Consensus 117 hp~gE~alArAA~~~Gi~~~lSs~s 141 (261)
|.|||+ +|+-.+++|+..+.||..
T Consensus 77 s~DGEl-iA~~l~kfG~~~IRGSs~ 100 (214)
T COG2121 77 SRDGEL-IARLLEKFGLRVIRGSSN 100 (214)
T ss_pred CcCHHH-HHHHHHHcCceEEeccCC
Confidence 567876 578889999999999863
No 193
>PF08628 Nexin_C: Sorting nexin C terminal; InterPro: IPR013937 This region is found at the C terminus of proteins belonging to the nexin family. It is found on proteins which also contain IPR001683 from INTERPRO.
Probab=22.22 E-value=1.1e+02 Score=23.99 Aligned_cols=70 Identities=13% Similarity=0.010 Sum_probs=38.8
Q ss_pred hhHHHHhhhhHHHHhhhhhccccCCcCCCCCCCHHHHHHHHHhhCChhhhhhhcCCccchhcHHHHHHHhhc
Q 024846 5 DLCMQYVASGIDLLEKLINVHVCRFQMAAEPVNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHR 76 (261)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~e~~Ar~~Lp~~~~~Y~~gGa~de~T~~~N~~Af~r 76 (261)
+-+.+|+..=+|.+| ++|..+..+.....-.-.+-++.|++.|-...=+.+..=.|.+.+-..=..-|+-
T Consensus 38 ~~v~~~i~~l~~~lw--P~g~~~~~~~~Rt~~ek~~tr~~A~~~L~~~~P~~l~~vvG~~~~~~g~~~if~~ 107 (113)
T PF08628_consen 38 EQVARYIQLLRESLW--PNGKLAEPPPPRTEEEKLRTRQEARELLLSLLPDTLKKVVGSENSRRGARRIFEM 107 (113)
T ss_pred HHHHHHHHHHHHhhC--CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhcHHHHHHccCHHHHHHHHHHHHHH
Confidence 456778888888888 6665554443332233444566677776444444444444555444444444443
No 194
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=21.94 E-value=3.6e+02 Score=23.44 Aligned_cols=63 Identities=14% Similarity=0.143 Sum_probs=43.3
Q ss_pred HHHHHHHHhcCCceeecCCCCCcHHHHHhhc--CCceeEEEeeecCHHH--HHHHHHHHHHcCCcEEE
Q 024846 122 VATARAAASCNTIMVLSFTSSSSIEEVAASC--NAVRFYQLYVFKKRDI--AATLVQRAERNGFKALV 185 (261)
Q Consensus 122 ~alArAA~~~Gi~~~lSs~ss~sleeIa~~~--~~~~wfQLy~~~dr~~--~~~li~rAe~aG~~Alv 185 (261)
..+++-.+..++|.++ ..+-.+.++..... +...++|+-+.+..++ ..++++.|++.|.+..+
T Consensus 135 ~~~~~L~~~~~~pIa~-dEs~~~~~~~~~~~~~~~~d~~~~k~~~~GGi~~~~~i~~~a~~~gi~~~~ 201 (229)
T cd00308 135 EGYAALRRRTGIPIAA-DESVTTVDDALEALELGAVDILQIKPTRVGGLTESRRAADLAEAFGIRVMV 201 (229)
T ss_pred HHHHHHHhhCCCCEEe-CCCCCCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHcCCEEee
Confidence 4455556678899887 55556777775432 4567889887776444 46888999999975543
No 195
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=21.91 E-value=2.8e+02 Score=28.12 Aligned_cols=65 Identities=12% Similarity=0.058 Sum_probs=39.0
Q ss_pred hHHHHHHHHhcCCceeecCCCCCcHHHHHh---hcCCceeEEEeee--cCHHHHHHHHHHHHHcCCcEEEEe
Q 024846 121 EVATARAAASCNTIMVLSFTSSSSIEEVAA---SCNAVRFYQLYVF--KKRDIAATLVQRAERNGFKALVLT 187 (261)
Q Consensus 121 E~alArAA~~~Gi~~~lSs~ss~sleeIa~---~~~~~~wfQLy~~--~dr~~~~~li~rAe~aG~~AlvvT 187 (261)
...++++|-++|..++.|-.. ..++++.+ ..+ ....-+... .+-+...+.+++|+++|...|+++
T Consensus 217 ~~~v~eaAL~aGAdiINsVs~-~~~d~~~~l~a~~g-~~vVlm~~~~~~~~~~l~~~ie~a~~~Gi~~IIlD 286 (499)
T TIGR00284 217 TLDELYEALKAGASGVIMPDV-ENAVELASEKKLPE-DAFVVVPGNQPTNYEELAKAVKKLRTSGYSKVAAD 286 (499)
T ss_pred CHHHHHHHHHcCCCEEEECCc-cchhHHHHHHHHcC-CeEEEEcCCCCchHHHHHHHHHHHHHCCCCcEEEe
Confidence 446677777779888887433 34555533 222 222222211 112667899999999999766554
No 196
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=21.80 E-value=3.5e+02 Score=25.29 Aligned_cols=68 Identities=22% Similarity=0.204 Sum_probs=42.7
Q ss_pred hhhHHHHHHHHhcCCceee-cCC-CCCc-----HHHHHhhcC-CceeEEEeeecCHHHHHHHHHHHHHcCCcEEEEeecC
Q 024846 119 EGEVATARAAASCNTIMVL-SFT-SSSS-----IEEVAASCN-AVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADT 190 (261)
Q Consensus 119 ~gE~alArAA~~~Gi~~~l-Ss~-ss~s-----leeIa~~~~-~~~wfQLy~~~dr~~~~~li~rAe~aG~~AlvvTVD~ 190 (261)
.-...+-++|++.|+-..+ +.. .+.. ++++..... ++ +..+.|.+.+...+++|.++|...+.++-|.
T Consensus 40 ~~~~Gi~~aa~~~G~~v~~~~~~~~d~~~q~~~i~~li~~~vdgI----iv~~~d~~al~~~l~~a~~~gIpVV~~d~~~ 115 (336)
T PRK15408 40 SGGNGAKEAGKELGVDVTYDGPTEPSVSGQVQLINNFVNQGYNAI----IVSAVSPDGLCPALKRAMQRGVKVLTWDSDT 115 (336)
T ss_pred HHHHHHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEE----EEecCCHHHHHHHHHHHHHCCCeEEEeCCCC
Confidence 3457788889999988877 322 1111 122222222 43 3346677777899999999998776665553
No 197
>PRK06361 hypothetical protein; Provisional
Probab=21.25 E-value=99 Score=26.66 Aligned_cols=24 Identities=33% Similarity=0.580 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHcCCcEEEEeecCC
Q 024846 168 IAATLVQRAERNGFKALVLTADTP 191 (261)
Q Consensus 168 ~~~~li~rAe~aG~~AlvvTVD~p 191 (261)
.+++++++|.+.|+++|++|==.+
T Consensus 11 ~~~e~v~~A~~~Gl~~i~iTDH~~ 34 (212)
T PRK06361 11 IPSELVRRARVLGYRAIAITDHAD 34 (212)
T ss_pred CHHHHHHHHHHcCCCEEEEecCCC
Confidence 468999999999999999995544
No 198
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=20.78 E-value=1e+02 Score=24.65 Aligned_cols=42 Identities=17% Similarity=0.251 Sum_probs=26.1
Q ss_pred CCchhhHHHHHHHHhcCCceeecCCC--CCcHHHHHhhcCCcee
Q 024846 116 ANPEGEVATARAAASCNTIMVLSFTS--SSSIEEVAASCNAVRF 157 (261)
Q Consensus 116 ~hp~gE~alArAA~~~Gi~~~lSs~s--s~sleeIa~~~~~~~w 157 (261)
.+|+.-...++.|.+.|++.++||-. ..-++++.+.+....+
T Consensus 75 T~p~~~~~~~~~~~~~g~~~ViGTTG~~~~~~~~l~~~a~~~~v 118 (124)
T PF01113_consen 75 TNPDAVYDNLEYALKHGVPLVIGTTGFSDEQIDELEELAKKIPV 118 (124)
T ss_dssp S-HHHHHHHHHHHHHHT-EEEEE-SSSHHHHHHHHHHHTTTSEE
T ss_pred CChHHhHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHHhccCCE
Confidence 36767788999999999999999743 2334455554443443
No 199
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=20.75 E-value=4.1e+02 Score=24.85 Aligned_cols=62 Identities=15% Similarity=0.138 Sum_probs=45.9
Q ss_pred HHHHHHHHhcCCceeecCCCCCcHHHHHhhc--CCceeEEEeeecCHHH--HHHHHHHHHHcCCcEE
Q 024846 122 VATARAAASCNTIMVLSFTSSSSIEEVAASC--NAVRFYQLYVFKKRDI--AATLVQRAERNGFKAL 184 (261)
Q Consensus 122 ~alArAA~~~Gi~~~lSs~ss~sleeIa~~~--~~~~wfQLy~~~dr~~--~~~li~rAe~aG~~Al 184 (261)
..+++-+++.++|.+++. +-.+++++.... +...++|+-+.+--++ ..++.+.|++.|.+..
T Consensus 218 ~~~~~l~~~~~~pia~dE-s~~~~~~~~~~~~~~~~d~~~ik~~~~GGit~~~~i~~~A~~~gi~~~ 283 (354)
T cd03317 218 IDHAELQKLLKTPICLDE-SIQSAEDARKAIELGACKIINIKPGRVGGLTEALKIHDLCQEHGIPVW 283 (354)
T ss_pred HHHHHHHhhcCCCEEeCC-ccCCHHHHHHHHHcCCCCEEEecccccCCHHHHHHHHHHHHHcCCcEE
Confidence 466677788899998875 557788877654 3456889887765544 4788999999998753
No 200
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=20.69 E-value=4.9e+02 Score=22.68 Aligned_cols=66 Identities=14% Similarity=0.181 Sum_probs=37.7
Q ss_pred HHHHHHHhcCCceeecCCCCCcHHHHHhhcC-CceeEE--EeeecCHHHHHHHHHHHHHcCCcEEEEeecCCC
Q 024846 123 ATARAAASCNTIMVLSFTSSSSIEEVAASCN-AVRFYQ--LYVFKKRDIAATLVQRAERNGFKALVLTADTPR 192 (261)
Q Consensus 123 alArAA~~~Gi~~~lSs~ss~sleeIa~~~~-~~~wfQ--Ly~~~dr~~~~~li~rAe~aG~~AlvvTVD~p~ 192 (261)
.+.+-+++.++|.+++..- .+++++..... +..... -...++.+..++++++ .|-+.+++.+|.-.
T Consensus 65 ~~~~i~~~~~~pv~~~ggi-~~~~d~~~~~~~G~~~vilg~~~l~~~~~~~~~~~~---~~~~~i~vsld~~~ 133 (232)
T TIGR03572 65 LISNLAEECFMPLTVGGGI-RSLEDAKKLLSLGADKVSINTAALENPDLIEEAARR---FGSQCVVVSIDVKK 133 (232)
T ss_pred HHHHHHHhCCCCEEEECCC-CCHHHHHHHHHcCCCEEEEChhHhcCHHHHHHHHHH---cCCceEEEEEEecc
Confidence 4556666778999887654 56777765431 221111 1223455554444433 36566899999643
No 201
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=20.65 E-value=1.2e+02 Score=26.11 Aligned_cols=70 Identities=13% Similarity=0.099 Sum_probs=43.1
Q ss_pred CCchhhHHHHHHHHhcCCceee-cCCCCCc------HHHHHhhcC-CceeEEEeeecCHHHHHHHHHHHHHcCCcEEEEe
Q 024846 116 ANPEGEVATARAAASCNTIMVL-SFTSSSS------IEEVAASCN-AVRFYQLYVFKKRDIAATLVQRAERNGFKALVLT 187 (261)
Q Consensus 116 ~hp~gE~alArAA~~~Gi~~~l-Ss~ss~s------leeIa~~~~-~~~wfQLy~~~dr~~~~~li~rAe~aG~~AlvvT 187 (261)
++..-...+-++|++.|.-..+ +...... ++...+..+ ++ +..+.+.+...+.++++.++|.+.+.++
T Consensus 12 ~~~~~~~g~~~~a~~~g~~~~~~~~~~~d~~~q~~~i~~~i~~~~d~I----iv~~~~~~~~~~~l~~~~~~gIpvv~~d 87 (257)
T PF13407_consen 12 FWQQVIKGAKAAAKELGYEVEIVFDAQNDPEEQIEQIEQAISQGVDGI----IVSPVDPDSLAPFLEKAKAAGIPVVTVD 87 (257)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEEEESTTTHHHHHHHHHHHHHTTESEE----EEESSSTTTTHHHHHHHHHTTSEEEEES
T ss_pred HHHHHHHHHHHHHHHcCCEEEEeCCCCCCHHHHHHHHHHHHHhcCCEE----EecCCCHHHHHHHHHHHhhcCceEEEEe
Confidence 3444567888999999988777 3332222 122222222 33 3345566667799999999999665554
Q ss_pred ec
Q 024846 188 AD 189 (261)
Q Consensus 188 VD 189 (261)
.|
T Consensus 88 ~~ 89 (257)
T PF13407_consen 88 SD 89 (257)
T ss_dssp ST
T ss_pred cc
Confidence 44
No 202
>PF05036 SPOR: Sporulation related domain; InterPro: IPR007730 This 70 residue domain is composed of two 35 residue repeats that are found in bacterial proteins involved in sporulation and cell division, such as FtsN, CwlM and RlpA. This repeat might be involved in binding peptidoglycan. FtsN is an essential cell division protein with a simple bitopic topology: a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. The repeats lie at the periplasmic C terminus, which has an RNP-like fold []. FtsN localises to the septum ring complex. The CwlM protein is a cell wall hydrolase, where the C-terminal region, including the repeats, determines substrate specificity []. RlpA is a rare lipoprotein A protein that may be important for cell division. Its N-terminal cysteine may be attached to thioglyceride and N-fatty acyl residues [].; PDB: 1X60_A 1UTA_A.
Probab=20.28 E-value=1.8e+02 Score=20.12 Aligned_cols=32 Identities=22% Similarity=0.315 Sum_probs=20.6
Q ss_pred CceeEEEeeecCHHHHHHHHHHHHHcCCcEEE
Q 024846 154 AVRFYQLYVFKKRDIAATLVQRAERNGFKALV 185 (261)
Q Consensus 154 ~~~wfQLy~~~dr~~~~~li~rAe~aG~~Alv 185 (261)
+..++|+.-..+++...+++++....|..+.+
T Consensus 3 ~~y~vQv~s~~~~~~A~~~~~~l~~~g~~~~~ 34 (76)
T PF05036_consen 3 SGYYVQVGSFSSEENAERLLAKLKKKGPDAYV 34 (76)
T ss_dssp -EEEEEEEEES-HHHHHHHHHHHHHHT-----
T ss_pred CcEEEEEEEcCCHHHHHHHHHHHHhcCCCcce
Confidence 34678888888888888888888888887764
No 203
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=20.25 E-value=3.9e+02 Score=20.24 Aligned_cols=38 Identities=11% Similarity=0.086 Sum_probs=26.7
Q ss_pred CceeEEEeeecCHHHHHHHHHHHHHcCCcEEEEeecCC
Q 024846 154 AVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTP 191 (261)
Q Consensus 154 ~~~wfQLy~~~dr~~~~~li~rAe~aG~~AlvvTVD~p 191 (261)
+..++=+-..+....+.++++.|++.|++.+++|-+.-
T Consensus 61 ~~~~i~iS~~g~~~~~~~~~~~a~~~g~~iv~iT~~~~ 98 (139)
T cd05013 61 GDVVIAISFSGETKETVEAAEIAKERGAKVIAITDSAN 98 (139)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEcCCCC
Confidence 43444333444556678889999999999999998743
No 204
>PLN02681 proline dehydrogenase
Probab=20.07 E-value=5.1e+02 Score=25.91 Aligned_cols=61 Identities=21% Similarity=0.268 Sum_probs=44.3
Q ss_pred HHHHHHHHhcCCceeecCCCC---CcHHH----HHhhc------CCc-eeEEEeeecCHHHHHHHHHHHHHcCCc
Q 024846 122 VATARAAASCNTIMVLSFTSS---SSIEE----VAASC------NAV-RFYQLYVFKKRDIAATLVQRAERNGFK 182 (261)
Q Consensus 122 ~alArAA~~~Gi~~~lSs~ss---~slee----Ia~~~------~~~-~wfQLy~~~dr~~~~~li~rAe~aG~~ 182 (261)
..+++.|.+.|+..++-..-+ ..+.. +.... |.+ .=+|-|..+..+.+..++++|++-|+.
T Consensus 223 ~~i~~~A~~~gv~l~IDAE~s~~q~aid~l~~~l~~~yN~~~~~~~V~~T~QaYLk~t~~~l~~~l~~a~~~g~~ 297 (455)
T PLN02681 223 QKLCERAAQLGVPLLIDAEYTSLQPAIDYITYDLAREFNKGKDRPIVYGTYQAYLKDARERLRLDLERSEREGVP 297 (455)
T ss_pred HHHHHHHHHCCCEEEEeCCcccchhHHHHHHHHHHHHhccccCCCcEEEEEeCccccCHHHHHHHHHHHHhcCCC
Confidence 478899999999999986443 22232 22222 211 258999999999999999999999885
No 205
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=20.02 E-value=1.5e+02 Score=27.23 Aligned_cols=69 Identities=14% Similarity=0.158 Sum_probs=37.2
Q ss_pred CHHHHHHHHHHHHHcCCcEEE-----------EeecCCCCCCchhHhhcCCCCC--Ccccccccccc-ccccccccccCc
Q 024846 165 KRDIAATLVQRAERNGFKALV-----------LTADTPRLGRREADIKNKMITP--PLKNLEGLLST-KVSSVRILKLMP 230 (261)
Q Consensus 165 dr~~~~~li~rAe~aG~~Alv-----------vTVD~p~~G~Rerd~r~~f~~P--~~~~l~~~~~~-~~~~~~k~~m~~ 230 (261)
+.+..++++++|+..|-.+|| +...+...|.-.||++. |... +...|...... .+.-...|+-||
T Consensus 136 ~~~~l~~l~~~a~~lGle~LVEVh~~~El~~a~~~ga~iiGINnRdL~t-~~vd~~~~~~L~~~ip~~~~~IsESGI~t~ 214 (247)
T PRK13957 136 TPSQIKSFLKHASSLGMDVLVEVHTEDEAKLALDCGAEIIGINTRDLDT-FQIHQNLVEEVAAFLPPNIVKVGESGIESR 214 (247)
T ss_pred CHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHhCCCCEEEEeCCCCcc-ceECHHHHHHHHhhCCCCcEEEEcCCCCCH
Confidence 455677788888888877775 33444445555555433 2211 11112222222 222346889999
Q ss_pred ccch
Q 024846 231 RDHG 234 (261)
Q Consensus 231 ~d~~ 234 (261)
+|+.
T Consensus 215 ~d~~ 218 (247)
T PRK13957 215 SDLD 218 (247)
T ss_pred HHHH
Confidence 9987
Done!