BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024847
(261 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ROE|A Chain A, Solution Structure Of Thermus Thermophilus Hb8 Ttha1718
Protein In Vitro
pdb|2ROG|A Chain A, Solution Structure Of Thermus Thermophilus Hb8 Ttha1718
Protein In Living E. Coli Cells
Length = 66
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%)
Query: 135 MHCEACAQGLRKRIRKIQGVECVETNLASGQVIVKGVVDPVKLVNDVNKKTRK 187
M C C + K ++K+ GVE VE +L G+ +V+G DP LV V ++ K
Sbjct: 9 MTCNHCVMAVTKALKKVPGVEKVEVSLEKGEALVEGTADPKALVQAVEEEGYK 61
Score = 30.8 bits (68), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 33 LKVD-MHCEACARKVARALKGFEGVDDITADSKASKVVVKGKTADPIKVCERLQKKSGRK 91
LKV+ M C C V +ALK GV+ + + + +V+G TADP + + ++++ G K
Sbjct: 4 LKVEGMTCNHCVMAVTKALKKVPGVEKVEVSLEKGEALVEG-TADPKALVQAVEEE-GYK 61
Query: 92 VELIS 96
E+++
Sbjct: 62 AEVLA 66
>pdb|2CRL|A Chain A, The Apo Form Of Hma Domain Of Copper Chaperone For
Superoxide Dismutase
Length = 98
Score = 32.3 bits (72), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 128 TVVLNVRMHCEACAQGLRKRIRKIQGVECVETNLASGQVIVKGVVDPVKLVNDVNKKTRK 187
T+ V+M C++C +RK ++ + GV+ VE +L V+V + P + V + + T +
Sbjct: 20 TLEFAVQMTCQSCVDAVRKSLQGVAGVQDVEVHLEDQMVLVHTTL-PSQEVQALLEGTGR 78
Query: 188 QA 189
QA
Sbjct: 79 QA 80
Score = 31.2 bits (69), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 35 VDMHCEACARKVARALKGFEGVDDITADSKASKVVVKGKTADPIKVCERLQKKSGRKVEL 94
V M C++C V ++L+G GV D+ + V+V T P + + L + +GR+ L
Sbjct: 25 VQMTCQSCVDAVRKSLQGVAGVQDVEVHLEDQMVLV--HTTLPSQEVQALLEGTGRQAVL 82
>pdb|2XMW|A Chain A, Pacs, N-Terminal Domain, From Synechocystis Pcc6803
Length = 71
Score = 31.2 bits (69), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 135 MHCEACAQGLRKRIRKIQGVECVETNLASGQVIV--KGVVDPVKLVNDVNK 183
M C ACA + + I K+ GV+ + N A Q +V G P L + V +
Sbjct: 12 MRCAACASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAVER 62
>pdb|2GCF|A Chain A, Solution Structure Of The N-Terminal Domain Of The
Coppper(I) Atpase Pacs In Its Apo Form
Length = 73
Score = 31.2 bits (69), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 135 MHCEACAQGLRKRIRKIQGVECVETNLASGQVIV--KGVVDPVKLVNDVNK 183
M C ACA + + I K+ GV+ + N A Q +V G P L + V +
Sbjct: 12 MRCAACASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAVER 62
>pdb|1OSD|A Chain A, Crystal Structure Of Oxidized Merp From Ralstonia
Metallidurans Ch34
pdb|1OSD|B Chain B, Crystal Structure Of Oxidized Merp From Ralstonia
Metallidurans Ch34
Length = 72
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 128 TVVLNVR-MHCEACAQGLRKRIRKIQGVECVETNLASGQVIV 168
TV L+V M C AC ++K I K++GV V+ + Q +V
Sbjct: 4 TVTLSVPGMTCSACPITVKKAISKVEGVSKVDVTFETRQAVV 45
>pdb|2VOY|A Chain A, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
pdb|1JWW|A Chain A, Nmr Characterization Of The N-Terminal Domain Of A
Potential Copper-Translocating P-Type Atpase From
Bacillus Subtilis
Length = 80
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 135 MHCEACAQGLRKRIRKIQGVECVETNLASGQVIVK 169
M C ACA + KR+ KI+GV N A V V+
Sbjct: 12 MTCAACANRIEKRLNKIEGVANAPVNFALETVTVE 46
>pdb|1KQK|A Chain A, Solution Structure Of The N-Terminal Domain Of A Potential
Copper-Translocating P-Type Atpase From Bacillus
Subtilis In The Cu(I)loaded State
Length = 80
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 135 MHCEACAQGLRKRIRKIQGVECVETNLASGQVIVK 169
M C ACA + KR+ KI+GV N A V V+
Sbjct: 12 MTCAACANRIEKRLNKIEGVANAPVNFALETVTVE 46
>pdb|2AJ0|A Chain A, Solution Structure Of Apocada
pdb|2AJ1|A Chain A, Solution Structure Of Apocada
Length = 71
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 32 VLKVD-MHCEACARKVARALKGFEGVDDITADSKASKVVVKGKTA 75
V +VD + C CA K R +K EGV + + ASK+ V G+ +
Sbjct: 6 VYRVDGLSCTNCAAKFERNVKEIEGVTEAIVNFGASKITVTGEAS 50
>pdb|4A48|A Chain A, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A48|B Chain B, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A4J|A Chain A, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
Length = 69
Score = 30.0 bits (66), Expect = 1.3, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 135 MHCEACAQGLRKRIRKIQGVECVETNLASGQVIVK--GVVDPVKLVNDVNK 183
M C +CA + + I K+ GV+ + N A Q +V G P L + V +
Sbjct: 11 MDCTSCASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAVER 61
>pdb|2RML|A Chain A, Solution Structure Of The N-Terminal Soluble Domains Of
Bacillus Subtilis Copa
Length = 147
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 135 MHCEACAQGLRKRIRKIQGVECVETNLASGQVIVK 169
M C ACA + KR+ KI+GV N A V V+
Sbjct: 83 MTCAACANRIEKRLNKIEGVANAPVNFALETVTVE 117
>pdb|1P6T|A Chain A, Structure Characterization Of The Water Soluble Region Of
P- Type Atpase Copa From Bacillus Subtilis
Length = 151
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 135 MHCEACAQGLRKRIRKIQGVECVETNLASGQVIVK 169
M C ACA + KR+ KI+GV N A V V+
Sbjct: 83 MTCAACANRIEKRLNKIEGVANAPVNFALETVTVE 117
Score = 27.3 bits (59), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 135 MHCEACAQGLRKRIRKIQGVECVETNLASGQVIVKGVVDPVK 176
M C ACA + K ++++ GV NLA+ V V + DP +
Sbjct: 15 MTCAACAARIEKGLKRMPGVTDANVNLATETVNV--IYDPAE 54
>pdb|2LDI|A Chain A, Nmr Solution Structure Of Ziaan Sub Mutant
Length = 71
Score = 29.3 bits (64), Expect = 2.3, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 37 MHCEACARKVARALKGFEGVDDITADSKASKVVVKGKTADPIKVCE 82
M C ACA + RAL+ +GV + + ++ V T DP +V E
Sbjct: 12 MRCAACASSIERALERLKGVAEASVTVATGRLTV---TYDPKQVSE 54
Score = 28.1 bits (61), Expect = 5.7, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 135 MHCEACAQGLRKRIRKIQGVECVETNLASGQVIVKGVVDPVKLVNDVNKKTRKQA 189
M C ACA + + + +++GV +A+G++ V DP K V+++ + R A
Sbjct: 12 MRCAACASSIERALERLKGVAEASVTVATGRLTV--TYDP-KQVSEITIQERIAA 63
>pdb|1MWY|A Chain A, Solution Structure Of The N-Terminal Domain Of Znta In
The Apo-Form
pdb|1MWZ|A Chain A, Solution Structure Of The N-Terminal Domain Of Znta In
The Zn(Ii)-Form
Length = 73
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 24/50 (48%)
Query: 37 MHCEACARKVARALKGFEGVDDITADSKASKVVVKGKTADPIKVCERLQK 86
M C ACARKV A++ GV+ + K+VV +V LQK
Sbjct: 12 MDCAACARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVESALQK 61
>pdb|2ROP|A Chain A, Solution Structure Of Domains 3 And 4 Of Human Atp7b
Length = 202
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 29/153 (18%), Positives = 56/153 (36%), Gaps = 8/153 (5%)
Query: 33 LKVD-MHCEACARKVARALKGFEGVDDI--TADSKASKVVVKGKTADPIKVCERLQ--KK 87
L++D MHC++C + + GV I + ++K ++V P+ + ++
Sbjct: 24 LRIDGMHCKSCVLNIEENIGQLLGVQSIQVSLENKTAQVKYDPSCTSPVALQRAIEALPP 83
Query: 88 SGRKVELISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXITVVLNVRMHCEACAQGLRKR 147
KV L T++ M C +C +
Sbjct: 84 GNFKVSLPDGAEGSGTDHRSSSSHSPGSPPRNQVQGTCSTTLIAIAGMTCASCVHSIEGM 143
Query: 148 IRKIQGVECVETNLASGQVIV---KGVVDPVKL 177
I +++GV+ + +LA G V V+ P +L
Sbjct: 144 ISQLEGVQQISVSLAEGTATVLYNPAVISPEEL 176
>pdb|1JK9|B Chain B, Heterodimer Between H48f-Ysod1 And Yccs
pdb|1JK9|D Chain D, Heterodimer Between H48f-Ysod1 And Yccs
Length = 249
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 28 TPEIVLKVDMHCEACARKVARALKGFEGVDDITAD 62
T E + MHCE C + LK G++ + D
Sbjct: 6 TYEATYAIPMHCENCVNDIKACLKNVPGINSLNFD 40
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 10/49 (20%), Positives = 25/49 (51%)
Query: 133 VRMHCEACAQGLRKRIRKIQGVECVETNLASGQVIVKGVVDPVKLVNDV 181
+ MHCE C ++ ++ + G+ + ++ + V+ V P ++N +
Sbjct: 13 IPMHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVESSVAPSTIINTL 61
>pdb|2QIF|A Chain A, Crystal Structure Of A Metallochaperone With A
Tetranuclear Cu(I) Cluster
pdb|2QIF|B Chain B, Crystal Structure Of A Metallochaperone With A
Tetranuclear Cu(I) Cluster
pdb|3I9Z|A Chain A, Crystal Structure Of A Metallochaperone With A Trinuclear
Cu(I) Cluster
Length = 69
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 135 MHCEACAQGLRKRIRKIQGVECVETNLASGQVIVKGVVDPVKL 177
M C+ C + + + ++ GV V NL +G+V V D V +
Sbjct: 11 MSCQHCVKAVETSVGELDGVSAVHVNLEAGKVDVSFDADKVSV 53
>pdb|1P8G|A Chain A, The Solution Structure Of Apo Copz From Bacillus Subtilis
pdb|1K0V|A Chain A, Copper Trafficking: The Solution Structure Of Bacillus
Subtilis Copz
Length = 73
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 135 MHCEACAQGLRKRIRKIQGVECVETNLASGQVIVKGVVDPVKL 177
M C+ C + + + ++ GV V NL +G+V V D V +
Sbjct: 11 MSCQHCVKAVETSVGELDGVSAVHVNLEAGKVDVSFDADKVSV 53
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.132 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,586,017
Number of Sequences: 62578
Number of extensions: 119234
Number of successful extensions: 430
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 388
Number of HSP's gapped (non-prelim): 42
length of query: 261
length of database: 14,973,337
effective HSP length: 97
effective length of query: 164
effective length of database: 8,903,271
effective search space: 1460136444
effective search space used: 1460136444
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)