BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024847
(261 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SZN7|HIP26_ARATH Heavy metal-associated isoprenylated plant protein 26
OS=Arabidopsis thaliana GN=HIPP26 PE=1 SV=1
Length = 153
Score = 60.8 bits (146), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 52/81 (64%), Gaps = 3/81 (3%)
Query: 19 KEEEKKEEETPEIVLKVDMHCEACARKVARALKGFEGVDDITADSKASKVVVKGKTADPI 78
K +++K+ +T EI KV M CE C RKV R+++G +GV +T + KA KV V G DP
Sbjct: 18 KIKKRKQLQTVEI--KVKMDCEGCERKVRRSVEGMKGVSSVTLEPKAHKVTVVGYV-DPN 74
Query: 79 KVCERLQKKSGRKVELISPLP 99
KV R+ ++G+KVEL +P
Sbjct: 75 KVVARMSHRTGKKVELWPYVP 95
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 62/139 (44%), Gaps = 17/139 (12%)
Query: 128 TVVLNVRMHCEACAQGLRKRIRKIQGVECVETNLASGQVIVKGVVDPVKLVNDVNKKTRK 187
TV + V+M CE C + +R+ + ++GV V + +V V G VDP K+V ++ +T K
Sbjct: 27 TVEIKVKMDCEGCERKVRRSVEGMKGVSSVTLEPKAHKVTVVGYVDPNKVVARMSHRTGK 86
Query: 188 QA----SIVKDEEKKQEEKKEGEKKD-GGEEAKVDEEKNKQQLDFNINRSEYWATKNYSE 242
+ + D +KK G +VD+ Q A + +E
Sbjct: 87 KVELWPYVPYDVVAHPYAAGVYDKKAPSGYVRRVDDPGVSQ-----------LARASSTE 135
Query: 243 FAYAPQIFSDENPNACFVM 261
Y FSDENP AC VM
Sbjct: 136 VRYT-TAFSDENPAACVVM 153
>sp|Q59385|COPA_ECOLI Copper-exporting P-type ATPase A OS=Escherichia coli (strain K12)
GN=copA PE=1 SV=4
Length = 834
Score = 41.6 bits (96), Expect = 0.005, Method: Composition-based stats.
Identities = 43/174 (24%), Positives = 74/174 (42%), Gaps = 15/174 (8%)
Query: 37 MHCEACARKVARALKGFEGVDDITADSKASKVVVKGKTADPIKVCERLQKKSGRKVELIS 96
+ C C ++V +L+ V+ AD ++ V G TA ++ E + K++G +
Sbjct: 12 LSCGHCVKRVKESLEQRPDVEQ--ADVSITEAHVTG-TASAEQLIETI-KQAGYDASVSH 67
Query: 97 PLPKPPPPDADDQEKKEQQKVEKKEEPPAAIT------VVLNVRMHCEACAQGLRKRIRK 150
P KP + E E PAA +L M C +C ++ ++
Sbjct: 68 PKAKPLAESSIPSEAL----TAVSEALPAATADDDDSQQLLLSGMSCASCVTRVQNALQS 123
Query: 151 IQGVECVETNLASGQVIVKGVVDPVKLVNDVNKKTRKQASIVKDEEKKQEEKKE 204
+ GV NLA +V G P LV V +K A ++D+ K++E ++E
Sbjct: 124 VPGVTQARVNLAERTALVMGSASPQDLVQAV-EKAGYGAEAIEDDAKRRERQQE 176
>sp|Q8XD24|COPA_ECO57 Copper-exporting P-type ATPase A OS=Escherichia coli O157:H7
GN=copA PE=3 SV=3
Length = 834
Score = 41.6 bits (96), Expect = 0.005, Method: Composition-based stats.
Identities = 43/174 (24%), Positives = 74/174 (42%), Gaps = 15/174 (8%)
Query: 37 MHCEACARKVARALKGFEGVDDITADSKASKVVVKGKTADPIKVCERLQKKSGRKVELIS 96
+ C C ++V +L+ V+ AD ++ V G TA ++ E + K++G +
Sbjct: 12 LSCGHCVKRVKESLEQRPDVEQ--ADVSITEAHVTG-TASAEQLIETI-KQAGYDASVSH 67
Query: 97 PLPKPPPPDADDQEKKEQQKVEKKEEPPAAIT------VVLNVRMHCEACAQGLRKRIRK 150
P KP + E E PAA +L M C +C ++ ++
Sbjct: 68 PKAKPLAESSIPSEAL----TAVSEALPAATADDDDSQQLLLSGMSCASCVTRVQNALQS 123
Query: 151 IQGVECVETNLASGQVIVKGVVDPVKLVNDVNKKTRKQASIVKDEEKKQEEKKE 204
+ GV NLA +V G P LV V +K A ++D+ K++E ++E
Sbjct: 124 VPGVTQARVNLAERTALVMGSASPQDLVQAV-EKAGYGAEAIEDDAKRRERQQE 176
>sp|Q9KPZ7|COPA_VIBCH Copper-exporting P-type ATPase A OS=Vibrio cholerae serotype O1
(strain ATCC 39315 / El Tor Inaba N16961) GN=copA PE=3
SV=1
Length = 915
Score = 38.5 bits (88), Expect = 0.052, Method: Composition-based stats.
Identities = 34/162 (20%), Positives = 68/162 (41%), Gaps = 7/162 (4%)
Query: 37 MHCEACARKVARALKGFEGVDDITADSKASKVVVKGKTADPIK--VCE-RLQKKSGRKVE 93
++C C K+ L + + SK +V TA+ +K V E Q +
Sbjct: 82 LNCGRCVNKLTTHLSAQAEIAKLHV-SKERLSLVTTLTAEQVKALVAEVGYQAIEAEQES 140
Query: 94 LISPLPKPPPPDADDQEKKEQQKVEKKEEPPAAITVVLNVRMHCEACAQGLRKRIRKIQG 153
+P + D + + E E +++++ M C +C + K + ++G
Sbjct: 141 TFAPAASIDEKETDTPDAENSSNTEATEASSQTLSLLIK-GMTCASCVASVEKALLSVEG 199
Query: 154 VECVETNLASGQVIVKGV-VDPVKLVNDVNKKTRKQASIVKD 194
V+ + NL +V+G+ +P L+N + + + QA I+ D
Sbjct: 200 VQSAQVNLTEQSALVRGIFANPQPLLNAI-QSSGYQAEILDD 240
Score = 34.7 bits (78), Expect = 0.62, Method: Composition-based stats.
Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 2/92 (2%)
Query: 4 ENKEEQKKEEAKKEKKEEEKKEEETPEIVLKVDMHCEACARKVARALKGFEGVDDITADS 63
+ KE + E + +T +++K M C +C V +AL EGV +
Sbjct: 149 DEKETDTPDAENSSNTEATEASSQTLSLLIK-GMTCASCVASVEKALLSVEGVQSAQVNL 207
Query: 64 KASKVVVKGKTADPIKVCERLQKKSGRKVELI 95
+V+G A+P + +Q SG + E++
Sbjct: 208 TEQSALVRGIFANPQPLLNAIQ-SSGYQAEIL 238
>sp|P70705|ATP7A_RAT Copper-transporting ATPase 1 OS=Rattus norvegicus GN=Atp7a PE=1
SV=1
Length = 1492
Score = 37.7 bits (86), Expect = 0.094, Method: Composition-based stats.
Identities = 45/173 (26%), Positives = 77/173 (44%), Gaps = 24/173 (13%)
Query: 16 KEKKEEEKKEEETP---EIVLKV---DMHCEACARKVARALKGFEGVDDI--TADSKASK 67
+EKK +E TP E++LK+ M C +C + + +GV I + D++ +
Sbjct: 153 QEKKSGTSEEHSTPQAGEVLLKMRVEGMTCHSCTSTIEGKVGKLQGVQRIKVSLDNQEAT 212
Query: 68 VVVKGK--TADPIKVCERLQKKSGRKVELISPLPKPPPPDADDQEKKEQQKVEKKE---- 121
+V + TA+ IK Q ++ I PK A D E+ + V+ E
Sbjct: 213 IVYQPHLITAEEIKK----QIEAVGFPAFIKKQPKYLKLGAIDVERLKSTPVKSSEGSQQ 268
Query: 122 EPPA-----AITVVLNVRMHCEACAQGLRKRIRKIQGVECVETNLASGQVIVK 169
+ PA AIT ++ MHC++C + + +Q V + +L + IVK
Sbjct: 269 KSPAYPSDSAITFTID-GMHCKSCVSNIESALSTLQYVSSIVVSLENRSAIVK 320
Score = 32.0 bits (71), Expect = 4.3, Method: Composition-based stats.
Identities = 36/168 (21%), Positives = 66/168 (39%), Gaps = 18/168 (10%)
Query: 8 EQKKEEAKKEKKEEEKKEEETPE---IVLKVD-MHCEACARKVARALKGFEGVDDITADS 63
E+ K K + ++K P I +D MHC++C + AL + V I
Sbjct: 253 ERLKSTPVKSSEGSQQKSPAYPSDSAITFTIDGMHCKSCVSNIESALSTLQYVSSIVVSL 312
Query: 64 KASKVVVKGKTADPIKVCERLQKKSGRKVELISPLPKPPPPDADDQEKKEQQKVEKKEEP 123
+ +VK + + E L+K +E +SP ++ + ++
Sbjct: 313 ENRSAIVKYNAS--LVTPEILRKA----IEAVSPGQYRVSISSEVESPTSSPSSSSLQKM 366
Query: 124 PAAIT-------VVLNVR-MHCEACAQGLRKRIRKIQGVECVETNLAS 163
P + VV+N+ M C +C Q + I K GV+ + +L +
Sbjct: 367 PLNLVSQPLTQEVVININGMTCNSCVQSIEGVISKKPGVKSIHVSLTN 414
>sp|Q6CIG2|CCS1_KLULA Superoxide dismutase 1 copper chaperone OS=Kluyveromyces lactis
(strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 /
NRRL Y-1140 / WM37) GN=CCS1 PE=3 SV=1
Length = 245
Score = 37.4 bits (85), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 25 EEETPEIVLKVDMHCEACARKVARALKGFEGVDDITADSKASKVVVKGKTADPIKVCERL 84
+E E V+MHCE+C + + LK G+ ++T D K + + V+G A P + L
Sbjct: 5 DENDFEATYAVEMHCESCTNDIQKCLKDVNGIKNVTFDIKDNLMNVEGHAA-PSAIINAL 63
Query: 85 QKKSGR 90
K GR
Sbjct: 64 -KNCGR 68
Score = 32.7 bits (73), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 27/47 (57%)
Query: 133 VRMHCEACAQGLRKRIRKIQGVECVETNLASGQVIVKGVVDPVKLVN 179
V MHCE+C ++K ++ + G++ V ++ + V+G P ++N
Sbjct: 15 VEMHCESCTNDIQKCLKDVNGIKNVTFDIKDNLMNVEGHAAPSAIIN 61
>sp|Q75DD6|CCS1_ASHGO Superoxide dismutase 1 copper chaperone OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=CCS1 PE=3 SV=1
Length = 238
Score = 37.4 bits (85), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 26 EETPEIVLKVDMHCEACARKVARALKGFEGVDDITADSKASKVVVKGKTADPIKVCERLQ 85
E+ E V MHC C +++RAL+ GV ++T D + V V+G A P + + L
Sbjct: 5 SESFEATYAVPMHCGDCTGEISRALRAVPGVQEVTPDLERQLVAVRG-IAPPSSIVQAL- 62
Query: 86 KKSGRKVEL 94
+GR L
Sbjct: 63 AATGRDAIL 71
Score = 33.1 bits (74), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 46/116 (39%), Gaps = 13/116 (11%)
Query: 133 VRMHCEACAQGLRKRIRKIQGVECVETNLASGQVIVKGVVDPVKLVNDVNKKTRKQASIV 192
V MHC C + + +R + GV+ V +L V V+G+ P +V + R +I+
Sbjct: 14 VPMHCGDCTGEISRALRAVPGVQEVTPDLERQLVAVRGIAPPSSIVQALAATGRD--AIL 71
Query: 193 KDEEKKQ-------EEKKEGEKKDGGEEAKVDEEKNKQQLDFNINR----SEYWAT 237
+ + E G G V NK D +N ++Y+A+
Sbjct: 72 RGSGEPDSAAVAILESASAGGPPVRGLVRAVQVAPNKTLFDITLNGLPGPAQYYAS 127
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.307 0.127 0.348
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 103,666,789
Number of Sequences: 539616
Number of extensions: 4866141
Number of successful extensions: 101887
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 798
Number of HSP's that attempted gapping in prelim test: 69861
Number of HSP's gapped (non-prelim): 22430
length of query: 261
length of database: 191,569,459
effective HSP length: 115
effective length of query: 146
effective length of database: 129,513,619
effective search space: 18908988374
effective search space used: 18908988374
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 60 (27.7 bits)