BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024849
(261 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3,
Nmr, 32 Structures
Length = 110
Score = 104 bits (260), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 49/104 (47%), Positives = 71/104 (68%), Gaps = 3/104 (2%)
Query: 14 KGPWTADEDKKLVTFILTHGHCCWRAVPK-LAGLRRCGKSCRLRWTNYLRPDLKRGLLNE 72
KGPWT +ED+K++ + +G W + K L G R GK CR RW N+L P++K+ E
Sbjct: 7 KGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKG--RLGKQCRERWHNHLNPEVKKSSWTE 64
Query: 73 AEEQLVIDLHARLGNRWSKIAARLPGRTDNEIKNHWNTHIKKKL 116
E++++ + H LGNRW++IA LPGRTDN +KNHWN+ IK+K+
Sbjct: 65 EEDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRKV 108
Score = 35.8 bits (81), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 63 PDLKRGLLNEAEEQLVIDLHARLGNR-WSKIAARLPGRTDNEIKNHWNTHI 112
PDL +G + E+Q VI+L + G + W+ IA L GR + + W+ H+
Sbjct: 3 PDLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHL 53
>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1
pdb|1H89|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex2
Length = 159
Score = 103 bits (258), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 48/104 (46%), Positives = 71/104 (68%), Gaps = 3/104 (2%)
Query: 14 KGPWTADEDKKLVTFILTHGHCCWRAVPK-LAGLRRCGKSCRLRWTNYLRPDLKRGLLNE 72
KGPWT +ED++++ + +G W + K L G R GK CR RW N+L P++K+ E
Sbjct: 58 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG--RIGKQCRERWHNHLNPEVKKTSWTE 115
Query: 73 AEEQLVIDLHARLGNRWSKIAARLPGRTDNEIKNHWNTHIKKKL 116
E++++ H RLGNRW++IA LPGRTDN IKNHWN+ +++K+
Sbjct: 116 EEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159
>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3
Length = 105
Score = 103 bits (258), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 48/104 (46%), Positives = 71/104 (68%), Gaps = 3/104 (2%)
Query: 14 KGPWTADEDKKLVTFILTHGHCCWRAVPK-LAGLRRCGKSCRLRWTNYLRPDLKRGLLNE 72
KGPWT +ED++++ + +G W + K L G R GK CR RW N+L P++K+ E
Sbjct: 4 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG--RIGKQCRERWHNHLNPEVKKTSWTE 61
Query: 73 AEEQLVIDLHARLGNRWSKIAARLPGRTDNEIKNHWNTHIKKKL 116
E++++ H RLGNRW++IA LPGRTDN IKNHWN+ +++K+
Sbjct: 62 EEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 64 DLKRGLLNEAEEQLVIDLHARLG-NRWSKIAARLPGRTDNEIKNHWNTHI 112
+L +G + E+Q VI L + G RWS IA L GR + + W+ H+
Sbjct: 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 50
>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
pdb|1MSF|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
Length = 105
Score = 103 bits (257), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 48/104 (46%), Positives = 71/104 (68%), Gaps = 3/104 (2%)
Query: 14 KGPWTADEDKKLVTFILTHGHCCWRAVPK-LAGLRRCGKSCRLRWTNYLRPDLKRGLLNE 72
KGPWT +ED++++ + +G W + K L G R GK CR RW N+L P++K+ E
Sbjct: 4 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG--RIGKQCRERWHNHLNPEVKKTSWTE 61
Query: 73 AEEQLVIDLHARLGNRWSKIAARLPGRTDNEIKNHWNTHIKKKL 116
E++++ H RLGNRW++IA LPGRTDN IKNHWN+ +++K+
Sbjct: 62 EEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 65 LKRGLLNEAEEQLVIDLHARLG-NRWSKIAARLPGRTDNEIKNHWNTHI 112
L +G + E+Q VI L + G RWS IA L GR + + W+ H+
Sbjct: 2 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 50
>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3
Length = 128
Score = 101 bits (252), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 47/104 (45%), Positives = 71/104 (68%), Gaps = 3/104 (2%)
Query: 14 KGPWTADEDKKLVTFILTHGHCCWRAVPK-LAGLRRCGKSCRLRWTNYLRPDLKRGLLNE 72
KGPWT +ED++++ + +G W + K L G R GK CR RW N+L P++K+ E
Sbjct: 27 KGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKG--RIGKQCRERWHNHLNPEVKKTSWTE 84
Query: 73 AEEQLVIDLHARLGNRWSKIAARLPGRTDNEIKNHWNTHIKKKL 116
E++++ H RLGNRW++IA LPGRTDN +KNHWN+ +++K+
Sbjct: 85 EEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 48 RCGKSCRLRWTNYLRPDLKRGLLNEAEEQLVIDLHARLG-NRWSKIAARLPGRTDNEIKN 106
R C+ RW L P+L +G + E+Q VI+ + G RWS IA L GR + +
Sbjct: 8 RTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRE 67
Query: 107 HWNTHI 112
W+ H+
Sbjct: 68 RWHNHL 73
>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|D Chain D, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|G Chain G, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|J Chain J, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
Length = 131
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 59/105 (56%), Gaps = 5/105 (4%)
Query: 14 KGPWTADEDKKLVTFILTHGHCCWRAVPKLAGL--RRCGKSCRLRWTNYLRPDLKRGLLN 71
KGP+T ED + ++ +G W P++ R K CR RW N+L P + +
Sbjct: 2 KGPFTEAEDDLIREYVKENGPQNW---PRITSFLPNRSPKQCRERWFNHLDPAVVKHAWT 58
Query: 72 EAEEQLVIDLHARLGNRWSKIAARLPGRTDNEIKNHWNTHIKKKL 116
E++ + + +LG++WS IA +PGRTDN IKN WN+ I K++
Sbjct: 59 PEEDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRI 103
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 67 RGLLNEAEEQLVIDLHARLG-NRWSKIAARLPGRTDNEIKNHWNTHIKKKLIKMGIDPVT 125
+G EAE+ L+ + G W +I + LP R+ + + W H+ ++K P
Sbjct: 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEE 61
Query: 126 HEPL 129
E +
Sbjct: 62 DETI 65
>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
pdb|1MBK|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
Length = 53
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 39/52 (75%)
Query: 65 LKRGLLNEAEEQLVIDLHARLGNRWSKIAARLPGRTDNEIKNHWNTHIKKKL 116
+K+ E E++++ H RLGNRW++IA LPGRTDN IKNHWN+ +++K+
Sbjct: 1 VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 52
>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized
Average Structure
pdb|1IDZ|A Chain A, Structure Of Myb Transforming Protein, Nmr, 20 Structures
Length = 54
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 40/53 (75%)
Query: 64 DLKRGLLNEAEEQLVIDLHARLGNRWSKIAARLPGRTDNEIKNHWNTHIKKKL 116
++K+ E E++++ H RLGNRW++IA LPGRTDN IKNHWN+ +++K+
Sbjct: 2 EVKKTSWTEEEDRILYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 54
>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of
Myb1 Protein From Protozoan Parasite Trichomonas
Vaginalis
pdb|2KDZ|A Chain A, Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein
From Protozoan Parasite Trichomonas Vaginalis In Complex
With Mre-1MRE-2r Dna
Length = 107
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Query: 14 KGPWTADEDKKLVTFILTHGHCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLNEA 73
K +T +ED KL ++ +G W + +L + R + CR RW NY+ P L+ +
Sbjct: 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLM-ITRNPRQCRERWNNYINPALRTDPWSPE 59
Query: 74 EEQLVIDLHARLGNRWSKIAARLPGRTDNEIKNHW 108
E+ L+ +A G +W+KI+ L R+DN I+N W
Sbjct: 60 EDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRW 94
>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSF|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSG|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
pdb|3OSG|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
Length = 126
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 47/100 (47%), Gaps = 2/100 (2%)
Query: 11 GVKKGPWTADEDKKLVTFILTHGHCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLL 70
KK +T +ED+ L + HG W+ + R + CR RW NYL P +
Sbjct: 8 AAKKQKFTPEEDEMLKRAVAQHG-SDWKMIAATFP-NRNARQCRDRWKNYLAPSISHTPW 65
Query: 71 NEAEEQLVIDLHARLGNRWSKIAARLPGRTDNEIKNHWNT 110
E+ L++ G +W+ IA PGRTD IKN W T
Sbjct: 66 TAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVT 105
>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant
Length = 52
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
Query: 14 KGPWTADEDKKLVTFILTHGHCCWRAVPK-LAGLRRCGKSCRLRWTNYLRPD 64
KGPWT +ED++L+ + +G W + K L G R GK CR RW N+L P+
Sbjct: 3 KGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKG--RIGKQCRERWHNHLNPE 52
Score = 31.6 bits (70), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 65 LKRGLLNEAEEQLVIDLHARLG-NRWSKIAARLPGRTDNEIKNHWNTHI 112
L +G + E+Q +I L + G RWS IA L GR + + W+ H+
Sbjct: 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49
>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2
Length = 52
Score = 45.4 bits (106), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
Query: 14 KGPWTADEDKKLVTFILTHGHCCWRAVPK-LAGLRRCGKSCRLRWTNYLRPD 64
KGPWT +ED++++ + +G W + K L G R GK CR RW N+L P+
Sbjct: 3 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG--RIGKQCRERWHNHLNPE 52
Score = 32.7 bits (73), Expect = 0.21, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 65 LKRGLLNEAEEQLVIDLHARLG-NRWSKIAARLPGRTDNEIKNHWNTHI 112
L +G + E+Q VI L + G RWS IA L GR + + W+ H+
Sbjct: 1 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49
>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
pdb|1MBH|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
Length = 53
Score = 45.4 bits (106), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
Query: 14 KGPWTADEDKKLVTFILTHGHCCWRAVPK-LAGLRRCGKSCRLRWTNYLRPD 64
KGPWT +ED++++ + +G W + K L G R GK CR RW N+L P+
Sbjct: 3 KGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKG--RIGKQCRERWHNHLNPE 52
Score = 33.5 bits (75), Expect = 0.12, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 65 LKRGLLNEAEEQLVIDLHARLG-NRWSKIAARLPGRTDNEIKNHWNTHI 112
L +G + E+Q VI+L + G RWS IA L GR + + W+ H+
Sbjct: 1 LIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49
>pdb|2DIM|A Chain A, Solution Structure Of The Myb_dna-Binding Domain Of
Human Cell Division Cycle 5-Like Protein
Length = 70
Score = 32.0 bits (71), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 17 WTADEDKKLVTFILTHGHCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKR 67
W ED+ L ++ +G W + L R+ K C+ RW +L P +K+
Sbjct: 12 WRNTEDEILKAAVMKYGKNQWSRIASLLH-RKSAKQCKARWYEWLDPSIKK 61
>pdb|2CU7|A Chain A, Solution Structure Of The Sant Domain Of Human Kiaa1915
Protein
Length = 72
Score = 30.8 bits (68), Expect = 0.80, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 74 EEQLVIDLHARLGNRWSKIAARLPGRTDNEIKNHWNTHIKKKLIKMGIDPVT 125
E++L A+ G RW+KI+ + RT ++K++ + K K +K G+D T
Sbjct: 16 EKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNK-VKCGLDKET 66
>pdb|4EEF|G Chain G, Crystal Structure Of The Designed Inhibitor Protein
F-Hb80.4 In Complex With The 1918 Influenza Virus
Hemagglutinin.
pdb|4EEF|H Chain H, Crystal Structure Of The Designed Inhibitor Protein
F-Hb80.4 In Complex With The 1918 Influenza Virus
Hemagglutinin.
pdb|4EEF|I Chain I, Crystal Structure Of The Designed Inhibitor Protein
F-Hb80.4 In Complex With The 1918 Influenza Virus
Hemagglutinin
Length = 74
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 87 NRWSKIAARLPGRTDNEIKNHW 108
+RW K+A + GRT E+K H+
Sbjct: 44 DRWKKVAQYVKGRTPEEVKKHY 65
>pdb|1MVH|A Chain A, Structure Of The Set Domain Histone Lysine
Methyltransferase Clr4
pdb|1MVX|A Chain A, Structure Of The Set Domain Histone Lysine
Methyltransferase Clr4
Length = 299
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 8/87 (9%)
Query: 177 TDHESKNRPTTSDDDLMSYMWSSDTFDLADTFT--SWNFPTASSSEGNPSSPWLMDY--- 231
T E+ R DDD ++Y++ D FD A +T + N+ S + SP + Y
Sbjct: 172 TSAEAAKRDKNYDDDGITYLFDLDMFDDASEYTVDAQNYGDVSRFFNHSCSPNIAIYSAV 231
Query: 232 -HQGFGDDGELGFGRFSEGDINTVLDM 257
+ GF +L F F+ DI + ++
Sbjct: 232 RNHGFRTIYDLAF--FAIKDIQPLEEL 256
>pdb|1MBE|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
pdb|1MBF|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
Length = 53
Score = 27.7 bits (60), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 14 KGPWTADEDKKLVTFILTHGHCCWRAVPKLAGLRRCGKSCRLRWTNYLRPD 64
K WT +ED+KL + +G W+ + R C+ RW L P+
Sbjct: 3 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE 52
>pdb|1GUU|A Chain A, Crystal Structure Of C-Myb R1
Length = 52
Score = 27.7 bits (60), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 14 KGPWTADEDKKLVTFILTHGHCCWRAVPKLAGLRRCGKSCRLRWTNYLRPD 64
K WT +ED+KL + +G W+ + R C+ RW L P+
Sbjct: 3 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE 52
>pdb|2CJJ|A Chain A, Crystal Structure Of The Myb Domain Of The Rad
Transcription Factor From Antirrhinum Majus
Length = 93
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 71 NEAEEQLVIDLHARLGNRWSKIAARLPGRTDNEIKNHWNTHIKK-KLIKMGIDP 123
N+A E+ + +RW+ +A + GRT E+K H+ ++ K I+ G P
Sbjct: 16 NKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESGKVP 69
>pdb|1MVF|D Chain D, Maze Addiction Antidote
pdb|1MVF|E Chain E, Maze Addiction Antidote
Length = 82
Score = 27.3 bits (59), Expect = 9.3, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 88 RW-SKIAARLPGRTDNEIKNHWNTHIKKKLI--KMGIDPVTHEPLQQQANITEDQAPINS 144
RW + A R+P + + + +K L+ K+ I+PV EP+ A + D P N
Sbjct: 8 RWGNSPAVRIPATLMQALNLNIDDEVKIDLVDGKLIIEPVRKEPVFTLAELVNDITPENL 67
Query: 145 HDD 147
H++
Sbjct: 68 HEN 70
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,812,281
Number of Sequences: 62578
Number of extensions: 378753
Number of successful extensions: 850
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 801
Number of HSP's gapped (non-prelim): 42
length of query: 261
length of database: 14,973,337
effective HSP length: 97
effective length of query: 164
effective length of database: 8,903,271
effective search space: 1460136444
effective search space used: 1460136444
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)