Query 024849
Match_columns 261
No_of_seqs 280 out of 1394
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 15:29:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024849.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024849hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gv2_A C-MYB, MYB proto-oncoge 100.0 3.2E-35 1.1E-39 229.9 9.5 105 11-116 1-105 (105)
2 3zqc_A MYB3; transcription-DNA 100.0 1.1E-34 3.7E-39 235.9 10.4 114 14-128 2-115 (131)
3 2k9n_A MYB24; R2R3 domain, DNA 100.0 5.1E-35 1.8E-39 230.0 8.0 104 14-118 1-104 (107)
4 3osg_A MYB21; transcription-DN 100.0 3.1E-34 1.1E-38 231.8 9.2 106 8-115 5-110 (126)
5 1h8a_C AMV V-MYB, MYB transfor 100.0 2.4E-34 8.3E-39 232.7 8.5 107 8-115 21-127 (128)
6 1h89_C C-MYB, MYB proto-oncoge 100.0 2.1E-33 7.1E-38 234.9 3.4 123 11-134 3-126 (159)
7 1h89_C C-MYB, MYB proto-oncoge 100.0 4.3E-32 1.5E-36 226.9 7.4 107 8-115 52-158 (159)
8 1h8a_C AMV V-MYB, MYB transfor 99.9 1.5E-24 5.3E-29 175.1 3.2 94 40-134 1-95 (128)
9 2dim_A Cell division cycle 5-l 99.9 6E-23 2.1E-27 149.5 2.0 67 8-75 3-69 (70)
10 1ign_A Protein (RAP1); RAP1,ye 99.8 1.4E-19 4.8E-24 159.0 6.8 106 9-115 3-200 (246)
11 2llk_A Cyclin-D-binding MYB-li 99.8 2.9E-19 1E-23 131.2 4.8 58 54-112 10-67 (73)
12 2dim_A Cell division cycle 5-l 99.7 9.7E-19 3.3E-23 127.1 5.9 65 62-126 4-69 (70)
13 2din_A Cell division cycle 5-l 99.7 2.7E-18 9.4E-23 123.3 7.0 60 60-120 2-61 (66)
14 2cu7_A KIAA1915 protein; nucle 99.7 5E-18 1.7E-22 124.1 7.0 65 61-126 3-67 (72)
15 2d9a_A B-MYB, MYB-related prot 99.7 3.3E-18 1.1E-22 120.6 3.2 57 9-66 3-59 (60)
16 1gvd_A MYB proto-oncogene prot 99.7 4.5E-18 1.5E-22 116.6 3.0 52 12-64 1-52 (52)
17 2d9a_A B-MYB, MYB-related prot 99.7 1.5E-17 5.1E-22 117.2 5.0 55 62-116 3-58 (60)
18 2juh_A Telomere binding protei 99.7 4.1E-18 1.4E-22 136.2 2.1 83 9-91 12-103 (121)
19 1guu_A C-MYB, MYB proto-oncoge 99.7 8.2E-18 2.8E-22 115.2 1.9 52 12-64 1-52 (52)
20 1guu_A C-MYB, MYB proto-oncoge 99.7 5.4E-17 1.9E-21 111.1 5.9 50 65-114 1-51 (52)
21 1ity_A TRF1; helix-turn-helix, 99.7 1.1E-16 3.9E-21 115.9 7.0 61 60-120 3-66 (69)
22 1gvd_A MYB proto-oncogene prot 99.7 9.3E-17 3.2E-21 110.0 5.8 50 65-114 1-51 (52)
23 2roh_A RTBP1, telomere binding 99.7 4.6E-17 1.6E-21 130.3 4.2 80 9-88 26-114 (122)
24 1ity_A TRF1; helix-turn-helix, 99.7 2.8E-17 9.6E-22 119.1 2.6 64 8-71 4-68 (69)
25 1x41_A Transcriptional adaptor 99.6 2.9E-16 9.9E-21 110.8 5.4 53 62-114 3-56 (60)
26 1w0t_A Telomeric repeat bindin 99.6 4.2E-16 1.4E-20 107.2 6.0 49 66-114 1-52 (53)
27 1x41_A Transcriptional adaptor 99.6 1.2E-16 4E-21 112.9 2.5 56 9-65 3-58 (60)
28 3sjm_A Telomeric repeat-bindin 99.6 7.6E-17 2.6E-21 115.4 1.5 56 11-66 8-64 (64)
29 2yum_A ZZZ3 protein, zinc fing 99.6 7.7E-16 2.6E-20 113.1 5.5 59 62-120 3-67 (75)
30 3sjm_A Telomeric repeat-bindin 99.6 1.3E-15 4.5E-20 109.0 5.9 52 65-116 9-63 (64)
31 3osg_A MYB21; transcription-DN 99.6 5.3E-16 1.8E-20 124.8 4.2 73 62-134 6-78 (126)
32 1gv2_A C-MYB, MYB proto-oncoge 99.6 4.6E-16 1.6E-20 121.0 3.2 71 64-134 1-72 (105)
33 2din_A Cell division cycle 5-l 99.6 1.3E-16 4.3E-21 114.6 -0.6 59 8-69 3-61 (66)
34 2elk_A SPCC24B10.08C protein; 99.6 2.9E-15 1E-19 105.0 6.1 51 62-112 4-56 (58)
35 2yum_A ZZZ3 protein, zinc fing 99.6 3.2E-16 1.1E-20 115.1 0.9 61 8-69 2-67 (75)
36 2elk_A SPCC24B10.08C protein; 99.5 9.6E-16 3.3E-20 107.5 2.0 52 10-61 5-56 (58)
37 2ltp_A Nuclear receptor corepr 99.3 4.8E-16 1.7E-20 118.1 0.0 56 60-115 9-64 (89)
38 2k9n_A MYB24; R2R3 domain, DNA 99.5 1.7E-15 5.8E-20 118.5 2.9 68 67-134 1-69 (107)
39 1w0t_A Telomeric repeat bindin 99.5 1.3E-15 4.6E-20 104.7 1.6 50 13-62 1-51 (53)
40 3zqc_A MYB3; transcription-DNA 99.5 3.7E-15 1.3E-19 120.5 3.4 68 67-134 2-70 (131)
41 2cu7_A KIAA1915 protein; nucle 99.5 1.9E-15 6.4E-20 110.3 0.6 59 7-67 2-60 (72)
42 2cqr_A RSGI RUH-043, DNAJ homo 99.5 3.4E-14 1.2E-18 104.1 5.7 51 63-113 14-68 (73)
43 2yus_A SWI/SNF-related matrix- 99.4 1.1E-13 3.7E-18 103.0 4.5 48 64-111 15-62 (79)
44 2llk_A Cyclin-D-binding MYB-li 99.4 5.4E-14 1.8E-18 103.1 2.4 60 3-66 12-71 (73)
45 2aje_A Telomere repeat-binding 99.4 1.4E-13 4.8E-18 107.5 4.0 80 8-87 7-95 (105)
46 1x58_A Hypothetical protein 49 99.4 7.9E-13 2.7E-17 93.4 6.2 50 65-114 6-58 (62)
47 1ign_A Protein (RAP1); RAP1,ye 99.4 3E-13 1E-17 118.8 4.9 69 63-132 4-78 (246)
48 2yus_A SWI/SNF-related matrix- 99.4 1.8E-13 6.2E-18 101.7 2.7 52 7-60 11-62 (79)
49 2ckx_A NGTRF1, telomere bindin 99.4 3.6E-13 1.2E-17 101.0 3.9 69 15-84 1-79 (83)
50 2ckx_A NGTRF1, telomere bindin 99.3 1.2E-12 4.3E-17 98.1 6.7 49 68-116 1-54 (83)
51 2juh_A Telomere binding protei 99.3 8.8E-13 3E-17 105.3 5.8 54 61-114 11-69 (121)
52 2aje_A Telomere repeat-binding 99.3 3E-12 1E-16 99.9 7.7 54 62-115 8-66 (105)
53 2ltp_A Nuclear receptor corepr 99.0 1.3E-13 4.5E-18 104.7 0.0 54 8-63 10-63 (89)
54 2cjj_A Radialis; plant develop 99.3 2.2E-12 7.6E-17 98.7 6.5 58 66-123 7-69 (93)
55 2cqr_A RSGI RUH-043, DNAJ homo 99.3 3.1E-13 1.1E-17 99.0 1.1 55 7-62 11-68 (73)
56 2roh_A RTBP1, telomere binding 99.3 2.2E-12 7.4E-17 103.2 5.0 54 62-115 26-84 (122)
57 3hm5_A DNA methyltransferase 1 99.1 1.3E-10 4.3E-15 88.7 6.3 67 50-120 17-88 (93)
58 2eqr_A N-COR1, N-COR, nuclear 99.1 1.7E-10 5.9E-15 81.3 5.6 48 66-113 11-58 (61)
59 2cqq_A RSGI RUH-037, DNAJ homo 99.0 2.2E-10 7.4E-15 83.6 5.5 57 64-121 5-65 (72)
60 2cjj_A Radialis; plant develop 99.0 7.1E-11 2.4E-15 90.3 0.6 48 13-61 7-57 (93)
61 2iw5_B Protein corest, REST co 98.8 7.5E-09 2.6E-13 90.2 6.0 49 66-114 132-180 (235)
62 2eqr_A N-COR1, N-COR, nuclear 98.7 2.9E-09 1E-13 75.0 2.3 51 8-60 6-56 (61)
63 1x58_A Hypothetical protein 49 98.7 2.5E-09 8.6E-14 75.4 1.8 49 12-62 6-57 (62)
64 1wgx_A KIAA1903 protein; MYB D 98.7 2.7E-08 9.2E-13 72.6 5.2 47 67-113 8-58 (73)
65 2cqq_A RSGI RUH-037, DNAJ homo 98.6 9.1E-09 3.1E-13 75.0 0.9 50 10-61 4-56 (72)
66 1fex_A TRF2-interacting telome 98.5 7.8E-08 2.7E-12 67.3 4.6 47 67-113 2-58 (59)
67 2xag_B REST corepressor 1; ami 98.5 5.3E-08 1.8E-12 93.6 4.8 46 68-113 381-426 (482)
68 1fex_A TRF2-interacting telome 98.4 3.8E-08 1.3E-12 69.0 1.1 48 14-62 2-58 (59)
69 1wgx_A KIAA1903 protein; MYB D 98.4 6.7E-08 2.3E-12 70.5 1.4 48 14-62 8-58 (73)
70 4eef_G F-HB80.4, designed hema 98.3 2.1E-07 7E-12 67.6 1.3 43 67-109 20-66 (74)
71 2iw5_B Protein corest, REST co 98.2 2.1E-07 7.3E-12 81.1 1.5 49 12-62 131-179 (235)
72 2yqk_A Arginine-glutamic acid 98.2 2.8E-06 9.6E-11 60.0 6.5 49 62-110 4-53 (63)
73 1ug2_A 2610100B20RIK gene prod 98.2 2.8E-06 9.6E-11 63.9 6.5 49 68-116 34-85 (95)
74 2lr8_A CAsp8-associated protei 97.4 3.9E-07 1.3E-11 65.0 0.0 45 69-114 16-63 (70)
75 1ofc_X ISWI protein; nuclear p 98.1 5.1E-06 1.8E-10 75.7 6.7 102 15-117 111-278 (304)
76 4eef_G F-HB80.4, designed hema 98.0 9.6E-07 3.3E-11 64.1 1.1 44 14-58 20-66 (74)
77 4iej_A DNA methyltransferase 1 97.9 2.7E-05 9.3E-10 59.0 7.2 62 55-120 22-88 (93)
78 2yqk_A Arginine-glutamic acid 97.9 5.4E-06 1.8E-10 58.5 2.7 50 8-59 3-53 (63)
79 2crg_A Metastasis associated p 97.7 5.6E-05 1.9E-09 54.4 6.1 44 67-110 8-52 (70)
80 4a69_C Nuclear receptor corepr 97.7 4.4E-05 1.5E-09 58.1 5.6 44 67-110 43-86 (94)
81 2xag_B REST corepressor 1; ami 97.4 4.3E-05 1.5E-09 73.4 2.2 46 13-60 379-424 (482)
82 3hm5_A DNA methyltransferase 1 97.2 7.8E-05 2.7E-09 56.6 1.3 47 13-60 29-79 (93)
83 2crg_A Metastasis associated p 97.1 0.00014 4.7E-09 52.3 1.8 45 13-59 7-52 (70)
84 2ebi_A DNA binding protein GT- 97.1 0.00038 1.3E-08 51.5 4.2 49 67-115 4-66 (86)
85 4a69_C Nuclear receptor corepr 97.1 0.00015 5.2E-09 55.0 1.7 44 14-59 43-86 (94)
86 4b4c_A Chromodomain-helicase-D 96.9 0.0027 9.1E-08 54.1 8.3 46 69-114 136-196 (211)
87 2ebi_A DNA binding protein GT- 96.9 7.7E-05 2.6E-09 55.4 -1.5 49 13-61 3-63 (86)
88 2y9y_A Imitation switch protei 96.9 0.0024 8.2E-08 59.5 7.8 104 15-118 124-295 (374)
89 2lr8_A CAsp8-associated protei 95.1 0.00092 3.1E-08 47.6 0.0 47 13-61 13-61 (70)
90 1ug2_A 2610100B20RIK gene prod 95.9 0.0026 9E-08 47.8 1.5 46 13-59 32-79 (95)
91 1irz_A ARR10-B; helix-turn-hel 94.8 0.071 2.4E-06 37.5 6.0 47 66-112 6-57 (64)
92 4b4c_A Chromodomain-helicase-D 94.4 0.031 1E-06 47.4 4.1 39 4-42 124-162 (211)
93 4iej_A DNA methyltransferase 1 94.0 0.017 5.8E-07 43.6 1.4 48 12-60 28-79 (93)
94 1ofc_X ISWI protein; nuclear p 93.8 0.11 3.9E-06 47.1 6.6 47 68-114 111-158 (304)
95 2xb0_X Chromo domain-containin 86.0 0.61 2.1E-05 41.6 4.0 28 15-42 169-196 (270)
96 1irz_A ARR10-B; helix-turn-hel 84.3 0.42 1.4E-05 33.5 1.7 47 11-58 4-54 (64)
97 2xb0_X Chromo domain-containin 79.1 4.3 0.00015 36.0 6.8 48 67-114 3-55 (270)
98 2lm1_A Lysine-specific demethy 68.6 7.9 0.00027 29.0 5.1 40 76-115 47-98 (107)
99 2li6_A SWI/SNF chromatin-remod 68.2 3.5 0.00012 31.7 3.0 40 76-115 52-99 (116)
100 2o8x_A Probable RNA polymerase 68.0 6.6 0.00023 26.0 4.1 44 70-115 16-59 (70)
101 2jrz_A Histone demethylase jar 67.3 7.1 0.00024 30.0 4.6 40 76-115 43-94 (117)
102 2y9y_A Imitation switch protei 65.7 10 0.00035 35.1 6.1 47 68-115 124-172 (374)
103 1ku3_A Sigma factor SIGA; heli 64.2 8.7 0.0003 26.1 4.2 44 70-115 11-58 (73)
104 2eqy_A RBP2 like, jumonji, at 64.1 9.4 0.00032 29.5 4.8 40 76-115 45-96 (122)
105 2cxy_A BAF250B subunit, HBAF25 63.1 9.8 0.00033 29.5 4.7 40 76-115 54-105 (125)
106 2p7v_B Sigma-70, RNA polymeras 59.7 8.6 0.0003 25.8 3.5 30 85-115 24-53 (68)
107 1kkx_A Transcription regulator 59.0 6.6 0.00023 30.6 3.1 41 77-117 52-100 (123)
108 1c20_A DEAD ringer protein; DN 55.9 16 0.00053 28.4 4.8 40 76-115 55-107 (128)
109 2rq5_A Protein jumonji; develo 55.7 13 0.00045 28.8 4.3 80 11-116 4-98 (121)
110 3hug_A RNA polymerase sigma fa 54.5 15 0.0005 26.2 4.1 40 74-114 41-80 (92)
111 2jxj_A Histone demethylase jar 54.2 6.7 0.00023 28.8 2.3 40 76-115 39-90 (96)
112 2kk0_A AT-rich interactive dom 49.9 18 0.00063 28.7 4.4 41 76-116 67-120 (145)
113 2rq5_A Protein jumonji; develo 48.9 3 0.0001 32.5 -0.5 57 24-83 46-113 (121)
114 1x3u_A Transcriptional regulat 46.7 37 0.0013 22.8 5.1 42 70-114 17-58 (79)
115 1ig6_A MRF-2, modulator recogn 46.6 10 0.00035 28.4 2.3 39 76-114 36-87 (107)
116 1tty_A Sigma-A, RNA polymerase 45.2 26 0.00088 24.7 4.2 44 70-115 19-66 (87)
117 3c57_A Two component transcrip 43.6 34 0.0012 24.5 4.7 44 69-115 27-70 (95)
118 3i4p_A Transcriptional regulat 43.5 27 0.00092 27.6 4.5 45 73-118 3-48 (162)
119 1or7_A Sigma-24, RNA polymeras 42.7 33 0.0011 26.9 4.9 30 85-115 155-184 (194)
120 3ulq_B Transcriptional regulat 41.7 47 0.0016 23.7 5.2 46 66-114 26-71 (90)
121 3cz6_A DNA-binding protein RAP 41.4 22 0.00076 29.2 3.6 24 10-33 110-141 (168)
122 1je8_A Nitrate/nitrite respons 41.1 37 0.0013 23.6 4.4 43 69-114 21-63 (82)
123 2q1z_A RPOE, ECF SIGE; ECF sig 40.2 28 0.00095 27.2 4.1 30 85-115 150-179 (184)
124 1u78_A TC3 transposase, transp 40.2 1.1E+02 0.0037 22.5 7.6 88 15-108 5-100 (141)
125 1fse_A GERE; helix-turn-helix 39.1 44 0.0015 22.0 4.4 44 68-114 10-53 (74)
126 1xsv_A Hypothetical UPF0122 pr 38.8 46 0.0016 24.8 4.9 39 75-114 30-68 (113)
127 2yqf_A Ankyrin-1; death domain 37.1 45 0.0015 24.9 4.6 35 71-106 14-48 (111)
128 2jpc_A SSRB; DNA binding prote 36.8 55 0.0019 20.8 4.5 37 76-114 4-40 (61)
129 3mzy_A RNA polymerase sigma-H 34.2 42 0.0014 25.2 4.1 29 85-114 123-151 (164)
130 2rnj_A Response regulator prot 33.5 44 0.0015 23.5 3.9 43 69-114 29-71 (91)
131 3cz6_A DNA-binding protein RAP 33.2 35 0.0012 28.0 3.5 17 63-79 110-126 (168)
132 1rp3_A RNA polymerase sigma fa 32.9 54 0.0019 26.4 4.8 30 84-114 201-230 (239)
133 2of5_H Leucine-rich repeat and 32.4 40 0.0014 25.6 3.6 31 75-106 13-43 (118)
134 1ntc_A Protein (nitrogen regul 32.1 71 0.0024 22.7 4.8 36 72-108 50-85 (91)
135 2e1c_A Putative HTH-type trans 31.9 43 0.0015 26.8 4.0 45 73-118 27-72 (171)
136 2dbb_A Putative HTH-type trans 31.6 70 0.0024 24.4 5.1 45 73-118 9-54 (151)
137 3e7l_A Transcriptional regulat 31.4 60 0.0021 21.4 4.1 33 73-106 19-51 (63)
138 2of5_A Death domain-containing 30.6 47 0.0016 25.2 3.8 41 61-105 13-53 (114)
139 2o71_A Death domain-containing 30.4 50 0.0017 25.1 3.9 39 62-104 14-52 (115)
140 2kk0_A AT-rich interactive dom 29.3 14 0.00048 29.4 0.6 56 24-79 68-136 (145)
141 1p4w_A RCSB; solution structur 29.1 97 0.0033 22.5 5.2 45 67-114 32-76 (99)
142 2cyy_A Putative HTH-type trans 28.1 63 0.0022 24.8 4.2 44 74-118 8-52 (151)
143 1s7o_A Hypothetical UPF0122 pr 27.2 79 0.0027 23.6 4.5 43 70-114 23-65 (113)
144 1wxp_A THO complex subunit 1; 26.3 77 0.0026 23.5 4.3 30 76-106 19-48 (110)
145 2p1m_A SKP1-like protein 1A; F 25.8 25 0.00087 28.0 1.5 36 38-81 119-154 (160)
146 1tc3_C Protein (TC3 transposas 23.9 1.1E+02 0.0038 17.6 5.0 38 69-108 5-42 (51)
147 2k27_A Paired box protein PAX- 22.8 2.5E+02 0.0087 21.3 7.4 78 14-96 23-111 (159)
148 1i1g_A Transcriptional regulat 22.5 1.4E+02 0.0047 22.2 5.2 43 75-118 6-49 (141)
149 1qgp_A Protein (double strande 20.4 1E+02 0.0034 21.4 3.6 46 71-117 12-61 (77)
150 3clo_A Transcriptional regulat 20.3 1E+02 0.0035 25.9 4.3 43 69-114 197-239 (258)
No 1
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=100.00 E-value=3.2e-35 Score=229.95 Aligned_cols=105 Identities=44% Similarity=0.905 Sum_probs=99.5
Q ss_pred CCccCCCCHHHHHHHHHHHHHhCCCCccccccccCccccccccccccccccCCCCcCCCCCHHHHHHHHHHHHHhCCChh
Q 024849 11 GVKKGPWTADEDKKLVTFILTHGHCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLNEAEEQLVIDLHARLGNRWS 90 (261)
Q Consensus 11 ~ikkg~WT~eED~~L~~lv~~~g~~~W~~Ia~~~~~~Rt~~qCr~Rw~~~L~p~l~k~~WT~EED~~L~~lv~~~G~~W~ 90 (261)
.+++|+||+|||++|+.+|.+||..+|..||+.|+ +|+++||++||.++|+|.+++++||+|||.+|+++|.+||++|+
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~ 79 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWA 79 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhc-CCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHH
Confidence 47899999999999999999999889999999998 99999999999999999999999999999999999999999999
Q ss_pred HHhccCCCCCHHHHHHHHHHHHHHHH
Q 024849 91 KIAARLPGRTDNEIKNHWNTHIKKKL 116 (261)
Q Consensus 91 ~IA~~l~gRT~~q~k~Rw~~~lk~~~ 116 (261)
.||+.|||||+++|++||+.++++++
T Consensus 80 ~Ia~~l~gRt~~~~k~rw~~~~~~~~ 105 (105)
T 1gv2_A 80 EIAKLLPGRTDNAIKNHWNSTMRRKV 105 (105)
T ss_dssp HHHTTCTTCCHHHHHHHHHHHTC---
T ss_pred HHHHHcCCCCHHHHHHHHHHHHhccC
Confidence 99999999999999999999988753
No 2
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=100.00 E-value=1.1e-34 Score=235.86 Aligned_cols=114 Identities=33% Similarity=0.624 Sum_probs=107.3
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCccccccccCccccccccccccccccCCCCcCCCCCHHHHHHHHHHHHHhCCChhHHh
Q 024849 14 KGPWTADEDKKLVTFILTHGHCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLNEAEEQLVIDLHARLGNRWSKIA 93 (261)
Q Consensus 14 kg~WT~eED~~L~~lv~~~g~~~W~~Ia~~~~~~Rt~~qCr~Rw~~~L~p~l~k~~WT~EED~~L~~lv~~~G~~W~~IA 93 (261)
||+||+|||++|+.+|..||..+|..||..|+ +|+++||++||.++|+|.+++++||+|||.+|+++|.+||++|+.||
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia 80 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLP-NRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIA 80 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCT-TSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHC-CCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHH
Confidence 79999999999999999999889999999998 99999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCcc
Q 024849 94 ARLPGRTDNEIKNHWNTHIKKKLIKMGIDPVTHEP 128 (261)
Q Consensus 94 ~~l~gRT~~q~k~Rw~~~lk~~~~k~~~~~~~~~~ 128 (261)
+.|||||+++||+||+.++++.+...+++...-.|
T Consensus 81 ~~l~gRt~~~~k~rw~~~l~~~~~~~~~~~~~~~p 115 (131)
T 3zqc_A 81 KLIPGRTDNAIKNRWNSSISKRISTNSNHKEILLP 115 (131)
T ss_dssp TTSTTCCHHHHHHHHHHTTGGGCCCCTTSCCCCCC
T ss_pred HHcCCCCHHHHHHHHHHHHHHHhhcCCCcccccCc
Confidence 99999999999999999999998877765544433
No 3
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=100.00 E-value=5.1e-35 Score=230.01 Aligned_cols=104 Identities=31% Similarity=0.578 Sum_probs=100.4
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCccccccccCccccccccccccccccCCCCcCCCCCHHHHHHHHHHHHHhCCChhHHh
Q 024849 14 KGPWTADEDKKLVTFILTHGHCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLNEAEEQLVIDLHARLGNRWSKIA 93 (261)
Q Consensus 14 kg~WT~eED~~L~~lv~~~g~~~W~~Ia~~~~~~Rt~~qCr~Rw~~~L~p~l~k~~WT~EED~~L~~lv~~~G~~W~~IA 93 (261)
||+||+|||++|+.+|..||..+|..||..|+ +|+++||++||.++|+|.+++++||+|||.+|+++|.+||++|+.||
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia 79 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMI-TRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKIS 79 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTT-TSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcC-CCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHH
Confidence 68999999999999999999889999999998 99999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHhh
Q 024849 94 ARLPGRTDNEIKNHWNTHIKKKLIK 118 (261)
Q Consensus 94 ~~l~gRT~~q~k~Rw~~~lk~~~~k 118 (261)
+.|||||+++||+||+.++++..+.
T Consensus 80 ~~l~gRt~~~~k~rw~~l~r~~~~~ 104 (107)
T 2k9n_A 80 KFLKNRSDNNIRNRWMMIARHRAKH 104 (107)
T ss_dssp HHHSSSCHHHHHHHHHHHHHHHHSS
T ss_pred HHCCCCCHHHHHHHHHHHHhhHHHh
Confidence 9999999999999999999887654
No 4
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=100.00 E-value=3.1e-34 Score=231.77 Aligned_cols=106 Identities=33% Similarity=0.605 Sum_probs=101.5
Q ss_pred cCCCCccCCCCHHHHHHHHHHHHHhCCCCccccccccCccccccccccccccccCCCCcCCCCCHHHHHHHHHHHHHhCC
Q 024849 8 DKLGVKKGPWTADEDKKLVTFILTHGHCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLNEAEEQLVIDLHARLGN 87 (261)
Q Consensus 8 ~kp~ikkg~WT~eED~~L~~lv~~~g~~~W~~Ia~~~~~~Rt~~qCr~Rw~~~L~p~l~k~~WT~EED~~L~~lv~~~G~ 87 (261)
.+++.+||+||+|||++|+++|..||. +|..||+.|+ +|+++||++||.++|+|.+++++||+|||.+|+++|.+||+
T Consensus 5 ~~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~ 82 (126)
T 3osg_A 5 NLKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFP-NRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGR 82 (126)
T ss_dssp C-CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCT-TCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcC-CCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCc
Confidence 467899999999999999999999997 9999999998 99999999999999999999999999999999999999999
Q ss_pred ChhHHhccCCCCCHHHHHHHHHHHHHHH
Q 024849 88 RWSKIAARLPGRTDNEIKNHWNTHIKKK 115 (261)
Q Consensus 88 ~W~~IA~~l~gRT~~q~k~Rw~~~lk~~ 115 (261)
+|++||+.|||||+++||+||+.++++.
T Consensus 83 ~W~~Ia~~l~gRt~~~~k~rw~~l~~k~ 110 (126)
T 3osg_A 83 QWAIIAKFFPGRTDIHIKNRWVTISNKL 110 (126)
T ss_dssp CHHHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999988764
No 5
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=100.00 E-value=2.4e-34 Score=232.69 Aligned_cols=107 Identities=42% Similarity=0.864 Sum_probs=102.4
Q ss_pred cCCCCccCCCCHHHHHHHHHHHHHhCCCCccccccccCccccccccccccccccCCCCcCCCCCHHHHHHHHHHHHHhCC
Q 024849 8 DKLGVKKGPWTADEDKKLVTFILTHGHCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLNEAEEQLVIDLHARLGN 87 (261)
Q Consensus 8 ~kp~ikkg~WT~eED~~L~~lv~~~g~~~W~~Ia~~~~~~Rt~~qCr~Rw~~~L~p~l~k~~WT~EED~~L~~lv~~~G~ 87 (261)
.+|++++|+||+|||++|+++|..||..+|..||+.|+ +|++.||++||.++|+|.+++++||+|||.+|+++|++||+
T Consensus 21 l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~G~ 99 (128)
T 1h8a_C 21 LNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGN 99 (128)
T ss_dssp -CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSS-SCCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred hCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhc-CCcHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHCc
Confidence 46899999999999999999999999878999999998 99999999999999999999999999999999999999999
Q ss_pred ChhHHhccCCCCCHHHHHHHHHHHHHHH
Q 024849 88 RWSKIAARLPGRTDNEIKNHWNTHIKKK 115 (261)
Q Consensus 88 ~W~~IA~~l~gRT~~q~k~Rw~~~lk~~ 115 (261)
+|+.||+.|||||+++|++||+.+++++
T Consensus 100 ~W~~Ia~~l~gRt~~~~k~r~~~~~~~~ 127 (128)
T 1h8a_C 100 RWAEIAKLLPGRTDNAVKNHWNSTMRRK 127 (128)
T ss_dssp CHHHHGGGSTTCCHHHHHHHHHTTTTC-
T ss_pred CHHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence 9999999999999999999999998875
No 6
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.97 E-value=2.1e-33 Score=234.95 Aligned_cols=123 Identities=28% Similarity=0.571 Sum_probs=78.9
Q ss_pred CCccCCCCHHHHHHHHHHHHHhCCCCccccccccCccccccccccccccccCCCCcCCCCCHHHHHHHHHHHHHhCC-Ch
Q 024849 11 GVKKGPWTADEDKKLVTFILTHGHCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLNEAEEQLVIDLHARLGN-RW 89 (261)
Q Consensus 11 ~ikkg~WT~eED~~L~~lv~~~g~~~W~~Ia~~~~~~Rt~~qCr~Rw~~~L~p~l~k~~WT~EED~~L~~lv~~~G~-~W 89 (261)
++++++||+|||++|+++|.+||..+|..||+.|+ +|+++||++||.++|+|.+++++||+|||.+|+++|.+||. +|
T Consensus 3 ~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W 81 (159)
T 1h89_C 3 HLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRW 81 (159)
T ss_dssp -----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccH
Confidence 47899999999999999999999889999999998 99999999999999999999999999999999999999995 69
Q ss_pred hHHhccCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCcchhhhcc
Q 024849 90 SKIAARLPGRTDNEIKNHWNTHIKKKLIKMGIDPVTHEPLQQQAN 134 (261)
Q Consensus 90 ~~IA~~l~gRT~~q~k~Rw~~~lk~~~~k~~~~~~~~~~l~~~~~ 134 (261)
..||..|||||+.||++||+++|.+.+++.+|+++++..|.+...
T Consensus 82 ~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~ 126 (159)
T 1h89_C 82 SVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHK 126 (159)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988776543
No 7
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.97 E-value=4.3e-32 Score=226.92 Aligned_cols=107 Identities=43% Similarity=0.866 Sum_probs=102.8
Q ss_pred cCCCCccCCCCHHHHHHHHHHHHHhCCCCccccccccCccccccccccccccccCCCCcCCCCCHHHHHHHHHHHHHhCC
Q 024849 8 DKLGVKKGPWTADEDKKLVTFILTHGHCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLNEAEEQLVIDLHARLGN 87 (261)
Q Consensus 8 ~kp~ikkg~WT~eED~~L~~lv~~~g~~~W~~Ia~~~~~~Rt~~qCr~Rw~~~L~p~l~k~~WT~EED~~L~~lv~~~G~ 87 (261)
.+|++++++||+|||++|+.+|..||..+|..||+.|+ +|++.||+.||.++|+|.+++++||+|||.+|++++.+||+
T Consensus 52 l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g~ 130 (159)
T 1h89_C 52 LNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGN 130 (159)
T ss_dssp TCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTST-TCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred cCCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcC-CCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHCC
Confidence 46899999999999999999999999878999999998 99999999999999999999999999999999999999999
Q ss_pred ChhHHhccCCCCCHHHHHHHHHHHHHHH
Q 024849 88 RWSKIAARLPGRTDNEIKNHWNTHIKKK 115 (261)
Q Consensus 88 ~W~~IA~~l~gRT~~q~k~Rw~~~lk~~ 115 (261)
+|++||+.|||||+++||+||+.+++++
T Consensus 131 ~W~~Ia~~l~gRt~~~~knr~~~~~r~~ 158 (159)
T 1h89_C 131 RWAEIAKLLPGRTDNAIKNHWNSTMRRK 158 (159)
T ss_dssp CHHHHHTTSTTCCHHHHHHHHHTTTCC-
T ss_pred CHHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence 9999999999999999999999998875
No 8
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.89 E-value=1.5e-24 Score=175.06 Aligned_cols=94 Identities=27% Similarity=0.555 Sum_probs=69.0
Q ss_pred cccccCccccccccccccccccCCCCcCCCCCHHHHHHHHHHHHHhCC-ChhHHhccCCCCCHHHHHHHHHHHHHHHHhh
Q 024849 40 VPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLNEAEEQLVIDLHARLGN-RWSKIAARLPGRTDNEIKNHWNTHIKKKLIK 118 (261)
Q Consensus 40 Ia~~~~~~Rt~~qCr~Rw~~~L~p~l~k~~WT~EED~~L~~lv~~~G~-~W~~IA~~l~gRT~~q~k~Rw~~~lk~~~~k 118 (261)
||+.|+ +|++.||++||.++|+|.+++++||+|||++|+++|.+||. +|.+||..|||||+.||++||+++|.+.+++
T Consensus 1 Ia~~~~-~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~ 79 (128)
T 1h8a_C 1 MEAVIK-NRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKK 79 (128)
T ss_dssp ----------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCC
T ss_pred CccccC-CCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhccccccc
Confidence 788888 99999999999999999999999999999999999999995 6999999999999999999999999999999
Q ss_pred CCCCCCCCcchhhhcc
Q 024849 119 MGIDPVTHEPLQQQAN 134 (261)
Q Consensus 119 ~~~~~~~~~~l~~~~~ 134 (261)
++|+++++..|.....
T Consensus 80 ~~WT~eEd~~L~~~~~ 95 (128)
T 1h8a_C 80 TSWTEEEDRIIYQAHK 95 (128)
T ss_dssp SCCCHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHH
Confidence 9999999988776543
No 9
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=6e-23 Score=149.48 Aligned_cols=67 Identities=25% Similarity=0.554 Sum_probs=64.5
Q ss_pred cCCCCccCCCCHHHHHHHHHHHHHhCCCCccccccccCccccccccccccccccCCCCcCCCCCHHHH
Q 024849 8 DKLGVKKGPWTADEDKKLVTFILTHGHCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLNEAEE 75 (261)
Q Consensus 8 ~kp~ikkg~WT~eED~~L~~lv~~~g~~~W~~Ia~~~~~~Rt~~qCr~Rw~~~L~p~l~k~~WT~EED 75 (261)
..|++++++||+|||++|+++|.+||..+|..||+.|+ +|+++||++||.++|+|.+++++||+|||
T Consensus 3 s~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 3 SGSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLH-RKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp SCSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHST-TCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhc-CCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 46889999999999999999999999779999999998 99999999999999999999999999997
No 10
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.78 E-value=1.4e-19 Score=158.96 Aligned_cols=106 Identities=15% Similarity=0.262 Sum_probs=92.7
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCCCC-----ccccccccCccccccccccccccccCCCCc-----------------
Q 024849 9 KLGVKKGPWTADEDKKLVTFILTHGHCC-----WRAVPKLAGLRRCGKSCRLRWTNYLRPDLK----------------- 66 (261)
Q Consensus 9 kp~ikkg~WT~eED~~L~~lv~~~g~~~-----W~~Ia~~~~~~Rt~~qCr~Rw~~~L~p~l~----------------- 66 (261)
.+.++|++||+|||+.|+++|.+||..+ |.+||+.|+ |||+.|||.||.++|.+.++
T Consensus 3 ~~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~Lp-GRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~G 81 (246)
T 1ign_A 3 LPSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDG 81 (246)
T ss_dssp -----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTST-TSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTS
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcC-CCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCC
Confidence 4678899999999999999999998643 999999999 99999999999999999986
Q ss_pred ------------CCCCCHHHHHHHHHHHHH-h------------------------------------------------
Q 024849 67 ------------RGLLNEAEEQLVIDLHAR-L------------------------------------------------ 85 (261)
Q Consensus 67 ------------k~~WT~EED~~L~~lv~~-~------------------------------------------------ 85 (261)
+..||.+||-.|...+.+ |
T Consensus 82 n~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 161 (246)
T 1ign_A 82 NLIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYR 161 (246)
T ss_dssp CBCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------C
T ss_pred CceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhc
Confidence 789999999999999877 2
Q ss_pred -----CC----ChhHHhccCCCCCHHHHHHHHHHHHHHH
Q 024849 86 -----GN----RWSKIAARLPGRTDNEIKNHWNTHIKKK 115 (261)
Q Consensus 86 -----G~----~W~~IA~~l~gRT~~q~k~Rw~~~lk~~ 115 (261)
|. .|.+||+.+|+||.+++|+||...|+..
T Consensus 162 ~~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 162 TQSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp CCCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred cccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence 11 6999999999999999999999988774
No 11
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.76 E-value=2.9e-19 Score=131.17 Aligned_cols=58 Identities=21% Similarity=0.307 Sum_probs=47.2
Q ss_pred ccccccccCCCCcCCCCCHHHHHHHHHHHHHhCCChhHHhccCCCCCHHHHHHHHHHHH
Q 024849 54 RLRWTNYLRPDLKRGLLNEAEEQLVIDLHARLGNRWSKIAARLPGRTDNEIKNHWNTHI 112 (261)
Q Consensus 54 r~Rw~~~L~p~l~k~~WT~EED~~L~~lv~~~G~~W~~IA~~l~gRT~~q~k~Rw~~~l 112 (261)
.-||.++|+|.+++++||+|||++|+++|++||++|++||+.| |||++|||+||+.+.
T Consensus 10 ~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L~ 67 (73)
T 2llk_A 10 GRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLMK 67 (73)
T ss_dssp ---------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHCS
T ss_pred CcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHHH
Confidence 4589999999999999999999999999999999999999999 999999999998643
No 12
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=9.7e-19 Score=127.11 Aligned_cols=65 Identities=20% Similarity=0.396 Sum_probs=62.3
Q ss_pred CCCCcCCCCCHHHHHHHHHHHHHhC-CChhHHhccCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCC
Q 024849 62 RPDLKRGLLNEAEEQLVIDLHARLG-NRWSKIAARLPGRTDNEIKNHWNTHIKKKLIKMGIDPVTH 126 (261)
Q Consensus 62 ~p~l~k~~WT~EED~~L~~lv~~~G-~~W~~IA~~l~gRT~~q~k~Rw~~~lk~~~~k~~~~~~~~ 126 (261)
.|.+++++||+|||.+|+++|.+|| ++|.+||..|+|||+.|||+||+++|++.+++.+|+++++
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 5788999999999999999999999 7999999999999999999999999999999999999876
No 13
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=2.7e-18 Score=123.35 Aligned_cols=60 Identities=20% Similarity=0.298 Sum_probs=57.6
Q ss_pred ccCCCCcCCCCCHHHHHHHHHHHHHhCCChhHHhccCCCCCHHHHHHHHHHHHHHHHhhCC
Q 024849 60 YLRPDLKRGLLNEAEEQLVIDLHARLGNRWSKIAARLPGRTDNEIKNHWNTHIKKKLIKMG 120 (261)
Q Consensus 60 ~L~p~l~k~~WT~EED~~L~~lv~~~G~~W~~IA~~l~gRT~~q~k~Rw~~~lk~~~~k~~ 120 (261)
+|+|.+++++||+|||.+|+++|++||++|.+||+ ++|||+.|||+||+.+|++.+++..
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~ 61 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDS 61 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCC
Confidence 79999999999999999999999999999999999 8899999999999999999988765
No 14
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.73 E-value=5e-18 Score=124.10 Aligned_cols=65 Identities=25% Similarity=0.246 Sum_probs=59.1
Q ss_pred cCCCCcCCCCCHHHHHHHHHHHHHhCCChhHHhccCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCC
Q 024849 61 LRPDLKRGLLNEAEEQLVIDLHARLGNRWSKIAARLPGRTDNEIKNHWNTHIKKKLIKMGIDPVTH 126 (261)
Q Consensus 61 L~p~l~k~~WT~EED~~L~~lv~~~G~~W~~IA~~l~gRT~~q~k~Rw~~~lk~~~~k~~~~~~~~ 126 (261)
.+|.+++++||+|||.+|+++|.+||++|..||++|||||++|||+||+.++++.++. ++++.+.
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~-g~~~~~~ 67 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC-GLDKETP 67 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS-CTTCCCS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc-CCCCCcc
Confidence 5799999999999999999999999999999999999999999999999999998766 6555443
No 15
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.70 E-value=3.3e-18 Score=120.62 Aligned_cols=57 Identities=23% Similarity=0.452 Sum_probs=54.2
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCCCCccccccccCccccccccccccccccCCCCc
Q 024849 9 KLGVKKGPWTADEDKKLVTFILTHGHCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLK 66 (261)
Q Consensus 9 kp~ikkg~WT~eED~~L~~lv~~~g~~~W~~Ia~~~~~~Rt~~qCr~Rw~~~L~p~l~ 66 (261)
.|++++++||+|||++|+++|.+||..+|..||+.|+ +|++.||++||.++|+|.++
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFP-NRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCS-SSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcc-CCCHHHHHHHHHHHcCCccC
Confidence 5789999999999999999999999779999999998 99999999999999999875
No 16
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.70 E-value=4.5e-18 Score=116.60 Aligned_cols=52 Identities=40% Similarity=0.865 Sum_probs=49.6
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCccccccccCccccccccccccccccCCC
Q 024849 12 VKKGPWTADEDKKLVTFILTHGHCCWRAVPKLAGLRRCGKSCRLRWTNYLRPD 64 (261)
Q Consensus 12 ikkg~WT~eED~~L~~lv~~~g~~~W~~Ia~~~~~~Rt~~qCr~Rw~~~L~p~ 64 (261)
+++++||+|||++|+++|.+||..+|..||+.|+ +|+++||++||.++|+|.
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence 5799999999999999999999878999999998 999999999999999984
No 17
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.69 E-value=1.5e-17 Score=117.24 Aligned_cols=55 Identities=18% Similarity=0.367 Sum_probs=51.9
Q ss_pred CCCCcCCCCCHHHHHHHHHHHHHhC-CChhHHhccCCCCCHHHHHHHHHHHHHHHH
Q 024849 62 RPDLKRGLLNEAEEQLVIDLHARLG-NRWSKIAARLPGRTDNEIKNHWNTHIKKKL 116 (261)
Q Consensus 62 ~p~l~k~~WT~EED~~L~~lv~~~G-~~W~~IA~~l~gRT~~q~k~Rw~~~lk~~~ 116 (261)
+|.+++++||+|||++|+++|.+|| ++|.+||+.|+|||+.|||+||+++|++.+
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i 58 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPS 58 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCcc
Confidence 5789999999999999999999999 699999999999999999999999998764
No 18
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.69 E-value=4.1e-18 Score=136.23 Aligned_cols=83 Identities=22% Similarity=0.283 Sum_probs=76.9
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCCCCccccccccC---ccccccccccccccccC-----CCCcCC-CCCHHHHHHHH
Q 024849 9 KLGVKKGPWTADEDKKLVTFILTHGHCCWRAVPKLAG---LRRCGKSCRLRWTNYLR-----PDLKRG-LLNEAEEQLVI 79 (261)
Q Consensus 9 kp~ikkg~WT~eED~~L~~lv~~~g~~~W~~Ia~~~~---~~Rt~~qCr~Rw~~~L~-----p~l~k~-~WT~EED~~L~ 79 (261)
++..++++||+|||+.|+.+|++||.++|..|++.+. .+||+.||++||.+++. |.++++ +|+++|+.+|+
T Consensus 12 ~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~rv~ 91 (121)
T 2juh_A 12 SQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVL 91 (121)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHHHH
Confidence 4678899999999999999999999889999998741 38999999999999998 999999 99999999999
Q ss_pred HHHHHhCCChhH
Q 024849 80 DLHARLGNRWSK 91 (261)
Q Consensus 80 ~lv~~~G~~W~~ 91 (261)
.++..+|++|.+
T Consensus 92 ~~h~~~gn~~~~ 103 (121)
T 2juh_A 92 AAHAYWSQQQGK 103 (121)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHccchhc
Confidence 999999999987
No 19
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.67 E-value=8.2e-18 Score=115.23 Aligned_cols=52 Identities=29% Similarity=0.673 Sum_probs=48.3
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCccccccccCccccccccccccccccCCC
Q 024849 12 VKKGPWTADEDKKLVTFILTHGHCCWRAVPKLAGLRRCGKSCRLRWTNYLRPD 64 (261)
Q Consensus 12 ikkg~WT~eED~~L~~lv~~~g~~~W~~Ia~~~~~~Rt~~qCr~Rw~~~L~p~ 64 (261)
+++++||+|||++|+++|..||..+|..||+.|+ +|++.||++||.++|+|+
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTST-TCCHHHHHHHHHHHHSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence 5799999999999999999999889999999998 999999999999999984
No 20
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.67 E-value=5.4e-17 Score=111.10 Aligned_cols=50 Identities=26% Similarity=0.497 Sum_probs=46.4
Q ss_pred CcCCCCCHHHHHHHHHHHHHhCC-ChhHHhccCCCCCHHHHHHHHHHHHHH
Q 024849 65 LKRGLLNEAEEQLVIDLHARLGN-RWSKIAARLPGRTDNEIKNHWNTHIKK 114 (261)
Q Consensus 65 l~k~~WT~EED~~L~~lv~~~G~-~W~~IA~~l~gRT~~q~k~Rw~~~lk~ 114 (261)
+++++||+|||.+|+++|.+||. +|.+||+.|+|||+.||++||+++|++
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 51 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 46899999999999999999997 899999999999999999999999875
No 21
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.66 E-value=1.1e-16 Score=115.89 Aligned_cols=61 Identities=28% Similarity=0.310 Sum_probs=56.2
Q ss_pred ccCCCCcCCCCCHHHHHHHHHHHHHhC-CChhHHhccCC--CCCHHHHHHHHHHHHHHHHhhCC
Q 024849 60 YLRPDLKRGLLNEAEEQLVIDLHARLG-NRWSKIAARLP--GRTDNEIKNHWNTHIKKKLIKMG 120 (261)
Q Consensus 60 ~L~p~l~k~~WT~EED~~L~~lv~~~G-~~W~~IA~~l~--gRT~~q~k~Rw~~~lk~~~~k~~ 120 (261)
...|..++++||+|||.+|+++|.+|| ++|+.||..|+ |||+.|||+||+++|++.+.+..
T Consensus 3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~ 66 (69)
T 1ity_A 3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSD 66 (69)
T ss_dssp CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCC
Confidence 456778899999999999999999999 69999999999 99999999999999999887754
No 22
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.66 E-value=9.3e-17 Score=110.00 Aligned_cols=50 Identities=34% Similarity=0.693 Sum_probs=47.1
Q ss_pred CcCCCCCHHHHHHHHHHHHHhCC-ChhHHhccCCCCCHHHHHHHHHHHHHH
Q 024849 65 LKRGLLNEAEEQLVIDLHARLGN-RWSKIAARLPGRTDNEIKNHWNTHIKK 114 (261)
Q Consensus 65 l~k~~WT~EED~~L~~lv~~~G~-~W~~IA~~l~gRT~~q~k~Rw~~~lk~ 114 (261)
+++++||+|||.+|+++|.+||. +|.+||+.|+|||+.|||+||+++|++
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 47899999999999999999996 699999999999999999999998875
No 23
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.65 E-value=4.6e-17 Score=130.31 Aligned_cols=80 Identities=23% Similarity=0.238 Sum_probs=72.6
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCCCCccccccccC---cccccccccccccccc-----CCCCcCCCCCHHH-HHHHH
Q 024849 9 KLGVKKGPWTADEDKKLVTFILTHGHCCWRAVPKLAG---LRRCGKSCRLRWTNYL-----RPDLKRGLLNEAE-EQLVI 79 (261)
Q Consensus 9 kp~ikkg~WT~eED~~L~~lv~~~g~~~W~~Ia~~~~---~~Rt~~qCr~Rw~~~L-----~p~l~k~~WT~EE-D~~L~ 79 (261)
+...++++||.|||+.|+++|++||.++|..|++... .+||+.||++||.|++ +|.++++.|+++| +.+|+
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v~ 105 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRVL 105 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHHH
Confidence 3456799999999999999999999999999998641 3899999999999999 8999999999999 89999
Q ss_pred HHHHHhCCC
Q 024849 80 DLHARLGNR 88 (261)
Q Consensus 80 ~lv~~~G~~ 88 (261)
.++..+|++
T Consensus 106 ~~h~~~g~~ 114 (122)
T 2roh_A 106 AAQAYWSVD 114 (122)
T ss_dssp HHHHHHHSS
T ss_pred HHHHHHhhH
Confidence 999999974
No 24
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.65 E-value=2.8e-17 Score=119.10 Aligned_cols=64 Identities=19% Similarity=0.262 Sum_probs=58.4
Q ss_pred cCCCCccCCCCHHHHHHHHHHHHHhCCCCccccccccCc-cccccccccccccccCCCCcCCCCC
Q 024849 8 DKLGVKKGPWTADEDKKLVTFILTHGHCCWRAVPKLAGL-RRCGKSCRLRWTNYLRPDLKRGLLN 71 (261)
Q Consensus 8 ~kp~ikkg~WT~eED~~L~~lv~~~g~~~W~~Ia~~~~~-~Rt~~qCr~Rw~~~L~p~l~k~~WT 71 (261)
.+|..++++||+|||++|+.+|.+||..+|..||+.|+. +|++.||++||.++|+|.+.++..+
T Consensus 4 ~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~ 68 (69)
T 1ity_A 4 KHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE 68 (69)
T ss_dssp TTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence 356788999999999999999999998799999999875 8999999999999999999988754
No 25
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.62 E-value=2.9e-16 Score=110.82 Aligned_cols=53 Identities=15% Similarity=0.266 Sum_probs=49.5
Q ss_pred CCCCcCCCCCHHHHHHHHHHHHHhC-CChhHHhccCCCCCHHHHHHHHHHHHHH
Q 024849 62 RPDLKRGLLNEAEEQLVIDLHARLG-NRWSKIAARLPGRTDNEIKNHWNTHIKK 114 (261)
Q Consensus 62 ~p~l~k~~WT~EED~~L~~lv~~~G-~~W~~IA~~l~gRT~~q~k~Rw~~~lk~ 114 (261)
.|.+.+++||+|||.+|+++|++|| ++|.+||+.|+|||+.|||+||+++|.+
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~ 56 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSG 56 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccC
Confidence 4678999999999999999999999 7999999999999999999999988764
No 26
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.62 E-value=4.2e-16 Score=107.23 Aligned_cols=49 Identities=29% Similarity=0.369 Sum_probs=46.3
Q ss_pred cCCCCCHHHHHHHHHHHHHhC-CChhHHhccCC--CCCHHHHHHHHHHHHHH
Q 024849 66 KRGLLNEAEEQLVIDLHARLG-NRWSKIAARLP--GRTDNEIKNHWNTHIKK 114 (261)
Q Consensus 66 ~k~~WT~EED~~L~~lv~~~G-~~W~~IA~~l~--gRT~~q~k~Rw~~~lk~ 114 (261)
++++||+|||.+|+++|.+|| ++|+.||..|+ |||+.||++||+++++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~ 52 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL 52 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence 478999999999999999999 69999999999 99999999999998874
No 27
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.61 E-value=1.2e-16 Score=112.87 Aligned_cols=56 Identities=18% Similarity=0.396 Sum_probs=52.1
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCCCCccccccccCccccccccccccccccCCCC
Q 024849 9 KLGVKKGPWTADEDKKLVTFILTHGHCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDL 65 (261)
Q Consensus 9 kp~ikkg~WT~eED~~L~~lv~~~g~~~W~~Ia~~~~~~Rt~~qCr~Rw~~~L~p~l 65 (261)
.+++++++||+|||++|+++|..||..+|.+||+.|+ +||++||++||.++|.+..
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~r~~~~l~~~~ 58 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKYFSGPS 58 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHT-TSCHHHHHHHHHHHTTCSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhC-CCCHHHHHHHHHHHccCCC
Confidence 4689999999999999999999999779999999998 9999999999999998753
No 28
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.61 E-value=7.6e-17 Score=115.45 Aligned_cols=56 Identities=23% Similarity=0.358 Sum_probs=49.6
Q ss_pred CCccCCCCHHHHHHHHHHHHHhCCCCccccccccC-ccccccccccccccccCCCCc
Q 024849 11 GVKKGPWTADEDKKLVTFILTHGHCCWRAVPKLAG-LRRCGKSCRLRWTNYLRPDLK 66 (261)
Q Consensus 11 ~ikkg~WT~eED~~L~~lv~~~g~~~W~~Ia~~~~-~~Rt~~qCr~Rw~~~L~p~l~ 66 (261)
..+|++||+|||++|+++|.+||..+|..||+.++ .+|++.||++||.++++|.++
T Consensus 8 ~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN 64 (64)
T 3sjm_A 8 ITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN 64 (64)
T ss_dssp --CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence 35799999999999999999999889999998754 379999999999999998875
No 29
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=7.7e-16 Score=113.09 Aligned_cols=59 Identities=20% Similarity=0.195 Sum_probs=54.2
Q ss_pred CCCCcCCCCCHHHHHHHHHHHHHhC------CChhHHhccCCCCCHHHHHHHHHHHHHHHHhhCC
Q 024849 62 RPDLKRGLLNEAEEQLVIDLHARLG------NRWSKIAARLPGRTDNEIKNHWNTHIKKKLIKMG 120 (261)
Q Consensus 62 ~p~l~k~~WT~EED~~L~~lv~~~G------~~W~~IA~~l~gRT~~q~k~Rw~~~lk~~~~k~~ 120 (261)
+|.+++++||+|||.+|+++|.+|| ++|.+||++|+|||..|||+||+++|++.++.+.
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g~ 67 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAGI 67 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCC
Confidence 5788999999999999999999999 6899999999999999999999999988765543
No 30
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.59 E-value=1.3e-15 Score=108.97 Aligned_cols=52 Identities=25% Similarity=0.418 Sum_probs=46.9
Q ss_pred CcCCCCCHHHHHHHHHHHHHhC-CChhHHhccCC--CCCHHHHHHHHHHHHHHHH
Q 024849 65 LKRGLLNEAEEQLVIDLHARLG-NRWSKIAARLP--GRTDNEIKNHWNTHIKKKL 116 (261)
Q Consensus 65 l~k~~WT~EED~~L~~lv~~~G-~~W~~IA~~l~--gRT~~q~k~Rw~~~lk~~~ 116 (261)
.++++||+|||++|+++|.+|| ++|++||+.++ |||+.|||+||++++++.+
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~gl 63 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 63 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCC
Confidence 4688999999999999999999 58999999865 9999999999999988754
No 31
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.59 E-value=5.3e-16 Score=124.79 Aligned_cols=73 Identities=18% Similarity=0.345 Sum_probs=67.8
Q ss_pred CCCCcCCCCCHHHHHHHHHHHHHhCCChhHHhccCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCcchhhhcc
Q 024849 62 RPDLKRGLLNEAEEQLVIDLHARLGNRWSKIAARLPGRTDNEIKNHWNTHIKKKLIKMGIDPVTHEPLQQQAN 134 (261)
Q Consensus 62 ~p~l~k~~WT~EED~~L~~lv~~~G~~W~~IA~~l~gRT~~q~k~Rw~~~lk~~~~k~~~~~~~~~~l~~~~~ 134 (261)
.+..++++||+|||++|+++|.+||.+|..||+.|+|||..||+.||+++|.+.+++++|++++++.|.....
T Consensus 6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~ 78 (126)
T 3osg_A 6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQ 78 (126)
T ss_dssp -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHH
Confidence 4568899999999999999999999999999999999999999999999999999999999999998876643
No 32
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.58 E-value=4.6e-16 Score=120.97 Aligned_cols=71 Identities=28% Similarity=0.515 Sum_probs=65.8
Q ss_pred CCcCCCCCHHHHHHHHHHHHHhCC-ChhHHhccCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCcchhhhcc
Q 024849 64 DLKRGLLNEAEEQLVIDLHARLGN-RWSKIAARLPGRTDNEIKNHWNTHIKKKLIKMGIDPVTHEPLQQQAN 134 (261)
Q Consensus 64 ~l~k~~WT~EED~~L~~lv~~~G~-~W~~IA~~l~gRT~~q~k~Rw~~~lk~~~~k~~~~~~~~~~l~~~~~ 134 (261)
.+++++||+|||.+|+++|.+||. +|..||+.|||||..||+.||.++|.+.+++++|+++++..|.....
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~ 72 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHK 72 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHH
Confidence 367899999999999999999996 79999999999999999999999999999999999999988876643
No 33
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=1.3e-16 Score=114.61 Aligned_cols=59 Identities=20% Similarity=0.339 Sum_probs=54.0
Q ss_pred cCCCCccCCCCHHHHHHHHHHHHHhCCCCccccccccCccccccccccccccccCCCCcCCC
Q 024849 8 DKLGVKKGPWTADEDKKLVTFILTHGHCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGL 69 (261)
Q Consensus 8 ~kp~ikkg~WT~eED~~L~~lv~~~g~~~W~~Ia~~~~~~Rt~~qCr~Rw~~~L~p~l~k~~ 69 (261)
..|.+++++||+|||++|+++|+.||. +|.+||+ ++ +||+.||+.||.++|+|.++++.
T Consensus 3 L~P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~-gRt~~qcr~Rw~~~l~~~~~~~~ 61 (66)
T 2din_A 3 SGSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-II-GRTAAQCLEHYEFLLDKAAQRDS 61 (66)
T ss_dssp CSSSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HH-SSCHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-cc-CcCHHHHHHHHHHHhChHhcCCC
Confidence 579999999999999999999999997 9999999 65 69999999999999999776653
No 34
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.57 E-value=2.9e-15 Score=105.01 Aligned_cols=51 Identities=27% Similarity=0.388 Sum_probs=46.6
Q ss_pred CCCCcCCCCCHHHHHHHHHHHHHhC-CChhHHhccCC-CCCHHHHHHHHHHHH
Q 024849 62 RPDLKRGLLNEAEEQLVIDLHARLG-NRWSKIAARLP-GRTDNEIKNHWNTHI 112 (261)
Q Consensus 62 ~p~l~k~~WT~EED~~L~~lv~~~G-~~W~~IA~~l~-gRT~~q~k~Rw~~~l 112 (261)
+..+.+++||+|||.+|+++|++|| ++|.+||++|+ |||+.|||+||+++.
T Consensus 4 ~~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 4 GSSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 3456788999999999999999999 89999999999 999999999998764
No 35
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=3.2e-16 Score=115.15 Aligned_cols=61 Identities=21% Similarity=0.349 Sum_probs=56.0
Q ss_pred cCCCCccCCCCHHHHHHHHHHHHHhCC-----CCccccccccCccccccccccccccccCCCCcCCC
Q 024849 8 DKLGVKKGPWTADEDKKLVTFILTHGH-----CCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGL 69 (261)
Q Consensus 8 ~kp~ikkg~WT~eED~~L~~lv~~~g~-----~~W~~Ia~~~~~~Rt~~qCr~Rw~~~L~p~l~k~~ 69 (261)
.+|++++++||+|||++|+++|..||. .+|.+||+.|+ +||+.||+.||++||.+.++.+.
T Consensus 2 s~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~-~Rt~~qcr~r~~~~l~~~~k~g~ 67 (75)
T 2yum_A 2 SSGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELG-NRTAKQVASQVQKYFIKLTKAGI 67 (75)
T ss_dssp CCCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHS-SSCHHHHHHHHHHHHGGGSTTCS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhcCC
Confidence 478999999999999999999999995 68999999999 99999999999999998776654
No 36
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.55 E-value=9.6e-16 Score=107.49 Aligned_cols=52 Identities=23% Similarity=0.351 Sum_probs=47.9
Q ss_pred CCCccCCCCHHHHHHHHHHHHHhCCCCccccccccCcccccccccccccccc
Q 024849 10 LGVKKGPWTADEDKKLVTFILTHGHCCWRAVPKLAGLRRCGKSCRLRWTNYL 61 (261)
Q Consensus 10 p~ikkg~WT~eED~~L~~lv~~~g~~~W~~Ia~~~~~~Rt~~qCr~Rw~~~L 61 (261)
..+.+++||+|||++|+++|.+||..+|..||+.|+.+||++||++||.+++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 4567899999999999999999997799999999987899999999999864
No 37
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.31 E-value=4.8e-16 Score=118.15 Aligned_cols=56 Identities=23% Similarity=0.173 Sum_probs=53.2
Q ss_pred ccCCCCcCCCCCHHHHHHHHHHHHHhCCChhHHhccCCCCCHHHHHHHHHHHHHHH
Q 024849 60 YLRPDLKRGLLNEAEEQLVIDLHARLGNRWSKIAARLPGRTDNEIKNHWNTHIKKK 115 (261)
Q Consensus 60 ~L~p~l~k~~WT~EED~~L~~lv~~~G~~W~~IA~~l~gRT~~q~k~Rw~~~lk~~ 115 (261)
.++|.+++++||.|||.+|+++|.+||++|..||..|+|||++|||+||++++++.
T Consensus 9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 9 SGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 57889999999999999999999999999999999999999999999999988874
No 38
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.54 E-value=1.7e-15 Score=118.46 Aligned_cols=68 Identities=22% Similarity=0.342 Sum_probs=63.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCC-ChhHHhccCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCcchhhhcc
Q 024849 67 RGLLNEAEEQLVIDLHARLGN-RWSKIAARLPGRTDNEIKNHWNTHIKKKLIKMGIDPVTHEPLQQQAN 134 (261)
Q Consensus 67 k~~WT~EED~~L~~lv~~~G~-~W~~IA~~l~gRT~~q~k~Rw~~~lk~~~~k~~~~~~~~~~l~~~~~ 134 (261)
+++||+|||.+|+++|.+||. +|..||..|||||+.||+.||.++|.+.+++++|+++++..|.....
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~ 69 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYA 69 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHH
Confidence 579999999999999999995 89999999999999999999999999999999999999988776543
No 39
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.53 E-value=1.3e-15 Score=104.67 Aligned_cols=50 Identities=22% Similarity=0.385 Sum_probs=46.3
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCCCccccccccCc-cccccccccccccccC
Q 024849 13 KKGPWTADEDKKLVTFILTHGHCCWRAVPKLAGL-RRCGKSCRLRWTNYLR 62 (261)
Q Consensus 13 kkg~WT~eED~~L~~lv~~~g~~~W~~Ia~~~~~-~Rt~~qCr~Rw~~~L~ 62 (261)
++++||+|||++|+.+|.+||..+|..||+.++. +|++.||++||.+++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 5899999999999999999998799999999875 6999999999999875
No 40
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.52 E-value=3.7e-15 Score=120.54 Aligned_cols=68 Identities=24% Similarity=0.530 Sum_probs=64.1
Q ss_pred CCCCCHHHHHHHHHHHHHhC-CChhHHhccCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCcchhhhcc
Q 024849 67 RGLLNEAEEQLVIDLHARLG-NRWSKIAARLPGRTDNEIKNHWNTHIKKKLIKMGIDPVTHEPLQQQAN 134 (261)
Q Consensus 67 k~~WT~EED~~L~~lv~~~G-~~W~~IA~~l~gRT~~q~k~Rw~~~lk~~~~k~~~~~~~~~~l~~~~~ 134 (261)
+|+||+|||++|+++|.+|| .+|..||..|||||..||+.||.++|.+.+++++|++++++.|.....
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~ 70 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYL 70 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999 689999999999999999999999999999999999999998876654
No 41
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.50 E-value=1.9e-15 Score=110.34 Aligned_cols=59 Identities=19% Similarity=0.292 Sum_probs=54.3
Q ss_pred ccCCCCccCCCCHHHHHHHHHHHHHhCCCCccccccccCccccccccccccccccCCCCcC
Q 024849 7 CDKLGVKKGPWTADEDKKLVTFILTHGHCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKR 67 (261)
Q Consensus 7 ~~kp~ikkg~WT~eED~~L~~lv~~~g~~~W~~Ia~~~~~~Rt~~qCr~Rw~~~L~p~l~k 67 (261)
+..|.+++++||+|||++|+++|..||. +|..||+.|+ +||+.||+.||.++|.+.++.
T Consensus 2 s~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~-~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 2 SSGSSGYSVKWTIEEKELFEQGLAKFGR-RWTKISKLIG-SRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCCSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHS-SSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhc
Confidence 3568999999999999999999999997 9999999998 999999999999998876655
No 42
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.48 E-value=3.4e-14 Score=104.14 Aligned_cols=51 Identities=12% Similarity=0.251 Sum_probs=47.4
Q ss_pred CCCcCCCCCHHHHHHHHHHHHHhC----CChhHHhccCCCCCHHHHHHHHHHHHH
Q 024849 63 PDLKRGLLNEAEEQLVIDLHARLG----NRWSKIAARLPGRTDNEIKNHWNTHIK 113 (261)
Q Consensus 63 p~l~k~~WT~EED~~L~~lv~~~G----~~W~~IA~~l~gRT~~q~k~Rw~~~lk 113 (261)
+...+++||.+||.+|++++.+|| ++|.+||++|||||..||++||+.+++
T Consensus 14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 457889999999999999999999 689999999999999999999998765
No 43
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.41 E-value=1.1e-13 Score=102.96 Aligned_cols=48 Identities=19% Similarity=0.284 Sum_probs=44.9
Q ss_pred CCcCCCCCHHHHHHHHHHHHHhCCChhHHhccCCCCCHHHHHHHHHHH
Q 024849 64 DLKRGLLNEAEEQLVIDLHARLGNRWSKIAARLPGRTDNEIKNHWNTH 111 (261)
Q Consensus 64 ~l~k~~WT~EED~~L~~lv~~~G~~W~~IA~~l~gRT~~q~k~Rw~~~ 111 (261)
...+++||+|||.+|+++|++||++|.+||++|++||+.||++||.++
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 456789999999999999999999999999999999999999999754
No 44
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.41 E-value=5.4e-14 Score=103.07 Aligned_cols=60 Identities=18% Similarity=0.262 Sum_probs=47.6
Q ss_pred CCccccCCCCccCCCCHHHHHHHHHHHHHhCCCCccccccccCccccccccccccccccCCCCc
Q 024849 3 RQPCCDKLGVKKGPWTADEDKKLVTFILTHGHCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLK 66 (261)
Q Consensus 3 r~~~~~kp~ikkg~WT~eED~~L~~lv~~~g~~~W~~Ia~~~~~~Rt~~qCr~Rw~~~L~p~l~ 66 (261)
|.-....|++++++||+|||++|+++|++||. .|..||+.| +||+.||+.||.. |....+
T Consensus 12 ~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~-kW~~IA~~l--gRt~~q~knRw~~-L~~~~~ 71 (73)
T 2llk_A 12 ENLYFQGDRNHVGKYTPEEIEKLKELRIKHGN-DWATIGAAL--GRSASSVKDRCRL-MKDTCN 71 (73)
T ss_dssp -------CCCCCCSSCHHHHHHHHHHHHHHSS-CHHHHHHHH--TSCHHHHHHHHHH-CSCCCS
T ss_pred ceeeecCCCCCCCCCCHHHHHHHHHHHHHHCC-CHHHHHHHh--CCCHHHHHHHHHH-HHHHcc
Confidence 33445679999999999999999999999997 699999998 6999999999984 554443
No 45
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.39 E-value=1.4e-13 Score=107.46 Aligned_cols=80 Identities=23% Similarity=0.275 Sum_probs=68.2
Q ss_pred cCCCCccCCCCHHHHHHHHHHHHHhCCCCccccccccC---cccccccccccccccc-----CCCCcCCCCCHHHHHH-H
Q 024849 8 DKLGVKKGPWTADEDKKLVTFILTHGHCCWRAVPKLAG---LRRCGKSCRLRWTNYL-----RPDLKRGLLNEAEEQL-V 78 (261)
Q Consensus 8 ~kp~ikkg~WT~eED~~L~~lv~~~g~~~W~~Ia~~~~---~~Rt~~qCr~Rw~~~L-----~p~l~k~~WT~EED~~-L 78 (261)
.++..++++||+|||+.|+.+|++||.++|..|++.+. .+||+.+|++||.+++ +|.++++.-+++|-.. +
T Consensus 7 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~rv 86 (105)
T 2aje_A 7 DPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNRV 86 (105)
T ss_dssp --CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHHH
Confidence 45678899999999999999999999989999998652 3899999999999998 7999999888877665 7
Q ss_pred HHHHHHhCC
Q 024849 79 IDLHARLGN 87 (261)
Q Consensus 79 ~~lv~~~G~ 87 (261)
++|...+|+
T Consensus 87 ~~~~~~~~~ 95 (105)
T 2aje_A 87 LNAHGYWTQ 95 (105)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888777653
No 46
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.37 E-value=7.9e-13 Score=93.36 Aligned_cols=50 Identities=18% Similarity=0.315 Sum_probs=46.1
Q ss_pred CcCCCCCHHHHHHHHHHHHHhCCChhHHh---ccCCCCCHHHHHHHHHHHHHH
Q 024849 65 LKRGLLNEAEEQLVIDLHARLGNRWSKIA---ARLPGRTDNEIKNHWNTHIKK 114 (261)
Q Consensus 65 l~k~~WT~EED~~L~~lv~~~G~~W~~IA---~~l~gRT~~q~k~Rw~~~lk~ 114 (261)
-++.+||+|||..|+++|++||.+|+.|+ ..+++||...+|+||+++.+.
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~ 58 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISG 58 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred CCCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence 36789999999999999999999999999 577999999999999988775
No 47
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.37 E-value=3e-13 Score=118.82 Aligned_cols=69 Identities=17% Similarity=0.399 Sum_probs=57.3
Q ss_pred CCCcCCCCCHHHHHHHHHHHHHhCCC------hhHHhccCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCcchhhh
Q 024849 63 PDLKRGLLNEAEEQLVIDLHARLGNR------WSKIAARLPGRTDNEIKNHWNTHIKKKLIKMGIDPVTHEPLQQQ 132 (261)
Q Consensus 63 p~l~k~~WT~EED~~L~~lv~~~G~~------W~~IA~~l~gRT~~q~k~Rw~~~lk~~~~k~~~~~~~~~~l~~~ 132 (261)
+.+++++||+|||++|+++|+++|++ |.+||+.|||||++|||+||+.+|++.+... |...++..+...
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln~v-y~~ded~~Li~d 78 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYV-YEVDKFGKLVRD 78 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCE-ECBCTTSCBCBC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcccc-cccCcchhhhhc
Confidence 45788999999999999999999975 9999999999999999999999999987744 666666655544
No 48
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.36 E-value=1.8e-13 Score=101.75 Aligned_cols=52 Identities=21% Similarity=0.303 Sum_probs=48.1
Q ss_pred ccCCCCccCCCCHHHHHHHHHHHHHhCCCCccccccccCccccccccccccccc
Q 024849 7 CDKLGVKKGPWTADEDKKLVTFILTHGHCCWRAVPKLAGLRRCGKSCRLRWTNY 60 (261)
Q Consensus 7 ~~kp~ikkg~WT~eED~~L~~lv~~~g~~~W~~Ia~~~~~~Rt~~qCr~Rw~~~ 60 (261)
+.++...+++||+|||++|+++|.+|| .+|.+||+.|+ +||+.||+.||.++
T Consensus 11 ~~~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~-~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 11 KSKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVG-SRTQDECILHFLRL 62 (79)
T ss_dssp CCCSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHS-SCCHHHHHHHHTTS
T ss_pred CccccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcC-CCCHHHHHHHHHHh
Confidence 355667899999999999999999999 69999999999 89999999999997
No 49
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.35 E-value=3.6e-13 Score=101.02 Aligned_cols=69 Identities=25% Similarity=0.384 Sum_probs=59.7
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCccccccc----cCcccccccccccccccc-----CCCCcCC-CCCHHHHHHHHHHHHH
Q 024849 15 GPWTADEDKKLVTFILTHGHCCWRAVPKL----AGLRRCGKSCRLRWTNYL-----RPDLKRG-LLNEAEEQLVIDLHAR 84 (261)
Q Consensus 15 g~WT~eED~~L~~lv~~~g~~~W~~Ia~~----~~~~Rt~~qCr~Rw~~~L-----~p~l~k~-~WT~EED~~L~~lv~~ 84 (261)
++||+|||+.|+.+|++||.++|..|++. ++ +||+.||++||.+++ +|.++++ +..++...+++.+...
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~-~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~ 79 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY 79 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCT-TSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccC-CCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence 48999999999999999999899999985 66 899999999999987 6766655 6777777888888764
No 50
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.35 E-value=1.2e-12 Score=98.06 Aligned_cols=49 Identities=24% Similarity=0.488 Sum_probs=45.2
Q ss_pred CCCCHHHHHHHHHHHHHhCC-ChhHHhcc----CCCCCHHHHHHHHHHHHHHHH
Q 024849 68 GLLNEAEEQLVIDLHARLGN-RWSKIAAR----LPGRTDNEIKNHWNTHIKKKL 116 (261)
Q Consensus 68 ~~WT~EED~~L~~lv~~~G~-~W~~IA~~----l~gRT~~q~k~Rw~~~lk~~~ 116 (261)
++||+|||..|+++|++||. +|+.|++. |+|||+++||+||+++++...
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~ 54 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS 54 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhcc
Confidence 48999999999999999996 99999996 899999999999999998653
No 51
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.34 E-value=8.8e-13 Score=105.32 Aligned_cols=54 Identities=26% Similarity=0.481 Sum_probs=50.1
Q ss_pred cCCCCcCCCCCHHHHHHHHHHHHHhCC-ChhHHhcc----CCCCCHHHHHHHHHHHHHH
Q 024849 61 LRPDLKRGLLNEAEEQLVIDLHARLGN-RWSKIAAR----LPGRTDNEIKNHWNTHIKK 114 (261)
Q Consensus 61 L~p~l~k~~WT~EED~~L~~lv~~~G~-~W~~IA~~----l~gRT~~q~k~Rw~~~lk~ 114 (261)
+.+..++++||.|||..|+++|++||. +|+.|++. |+|||+.+||+||+++++.
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~ 69 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHT 69 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 566788999999999999999999996 99999998 4999999999999999984
No 52
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.32 E-value=3e-12 Score=99.92 Aligned_cols=54 Identities=22% Similarity=0.406 Sum_probs=48.4
Q ss_pred CCCCcCCCCCHHHHHHHHHHHHHhCC-ChhHHhccC----CCCCHHHHHHHHHHHHHHH
Q 024849 62 RPDLKRGLLNEAEEQLVIDLHARLGN-RWSKIAARL----PGRTDNEIKNHWNTHIKKK 115 (261)
Q Consensus 62 ~p~l~k~~WT~EED~~L~~lv~~~G~-~W~~IA~~l----~gRT~~q~k~Rw~~~lk~~ 115 (261)
.+..++++||.|||+.|+++|++||. +|+.|++.+ +|||+.+||+||+++++..
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~ 66 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTA 66 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTT
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 34567899999999999999999996 999999965 8999999999999999754
No 53
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.00 E-value=1.3e-13 Score=104.66 Aligned_cols=54 Identities=22% Similarity=0.467 Sum_probs=50.5
Q ss_pred cCCCCccCCCCHHHHHHHHHHHHHhCCCCccccccccCccccccccccccccccCC
Q 024849 8 DKLGVKKGPWTADEDKKLVTFILTHGHCCWRAVPKLAGLRRCGKSCRLRWTNYLRP 63 (261)
Q Consensus 8 ~kp~ikkg~WT~eED~~L~~lv~~~g~~~W~~Ia~~~~~~Rt~~qCr~Rw~~~L~p 63 (261)
..|++++++||+|||++|+++|..||. +|..||+.|+ +||+.||+.||.++|..
T Consensus 10 ~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l~-gRt~~q~k~r~~~~lrk 63 (89)
T 2ltp_A 10 GRENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMVG-SKTVSQCKNFYFNYKKR 63 (89)
Confidence 458899999999999999999999997 8999999998 99999999999998763
No 54
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.32 E-value=2.2e-12 Score=98.67 Aligned_cols=58 Identities=24% Similarity=0.417 Sum_probs=48.9
Q ss_pred cCCCCCHHHHHHHHHHHHHhC----CChhHHhccCCCCCHHHHHHHHHHHHHHH-HhhCCCCC
Q 024849 66 KRGLLNEAEEQLVIDLHARLG----NRWSKIAARLPGRTDNEIKNHWNTHIKKK-LIKMGIDP 123 (261)
Q Consensus 66 ~k~~WT~EED~~L~~lv~~~G----~~W~~IA~~l~gRT~~q~k~Rw~~~lk~~-~~k~~~~~ 123 (261)
.+++||.|||.+|++++.+|| ++|.+||+.|||||.++|++||+.++... .+..+..|
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv~~iesg~vp 69 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESGKVP 69 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 467899999999999999996 67999999999999999999999988764 33444333
No 55
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.30 E-value=3.1e-13 Score=99.03 Aligned_cols=55 Identities=16% Similarity=0.417 Sum_probs=49.4
Q ss_pred ccCCCCccCCCCHHHHHHHHHHHHHhC---CCCccccccccCccccccccccccccccC
Q 024849 7 CDKLGVKKGPWTADEDKKLVTFILTHG---HCCWRAVPKLAGLRRCGKSCRLRWTNYLR 62 (261)
Q Consensus 7 ~~kp~ikkg~WT~eED~~L~~lv~~~g---~~~W~~Ia~~~~~~Rt~~qCr~Rw~~~L~ 62 (261)
-+++.+.+++||++||++|+.+|..|| ..+|.+||+.|| +||+.||+.||.+++.
T Consensus 11 ~~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vp-GRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 11 KERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIARYKLLVS 68 (73)
T ss_dssp CCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS-SSCHHHHHHHHHHHHS
T ss_pred ccccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 356778899999999999999999998 347999999999 9999999999998654
No 56
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.28 E-value=2.2e-12 Score=103.19 Aligned_cols=54 Identities=26% Similarity=0.485 Sum_probs=48.1
Q ss_pred CCCCcCCCCCHHHHHHHHHHHHHhCC-ChhHHhcc----CCCCCHHHHHHHHHHHHHHH
Q 024849 62 RPDLKRGLLNEAEEQLVIDLHARLGN-RWSKIAAR----LPGRTDNEIKNHWNTHIKKK 115 (261)
Q Consensus 62 ~p~l~k~~WT~EED~~L~~lv~~~G~-~W~~IA~~----l~gRT~~q~k~Rw~~~lk~~ 115 (261)
....++++||.|||+.|+++|++||. +|+.|++. |+|||+.+||+||+++++..
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~ 84 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTA 84 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 34567899999999999999999996 99999996 48999999999999999643
No 57
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=99.09 E-value=1.3e-10 Score=88.68 Aligned_cols=67 Identities=19% Similarity=0.226 Sum_probs=60.8
Q ss_pred ccccccccccccCCCCcCCCCCHHHHHHHHHHHHHhCCChhHHhccC-----CCCCHHHHHHHHHHHHHHHHhhCC
Q 024849 50 GKSCRLRWTNYLRPDLKRGLLNEAEEQLVIDLHARLGNRWSKIAARL-----PGRTDNEIKNHWNTHIKKKLIKMG 120 (261)
Q Consensus 50 ~~qCr~Rw~~~L~p~l~k~~WT~EED~~L~~lv~~~G~~W~~IA~~l-----~gRT~~q~k~Rw~~~lk~~~~k~~ 120 (261)
+.=+.++|.++|.+ .+||.||+..|++|+++||.+|..|+..+ ++||..++|+||..+.++.+...+
T Consensus 17 ~~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r~ 88 (93)
T 3hm5_A 17 PVYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRA 88 (93)
T ss_dssp CCCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred CccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 46678999999976 89999999999999999999999999999 589999999999999988777654
No 58
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=1.7e-10 Score=81.35 Aligned_cols=48 Identities=13% Similarity=0.102 Sum_probs=43.8
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCChhHHhccCCCCCHHHHHHHHHHHHH
Q 024849 66 KRGLLNEAEEQLVIDLHARLGNRWSKIAARLPGRTDNEIKNHWNTHIK 113 (261)
Q Consensus 66 ~k~~WT~EED~~L~~lv~~~G~~W~~IA~~l~gRT~~q~k~Rw~~~lk 113 (261)
...+||+||+.++++++.+||.+|..||..||+||..+|+.+|+...+
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~Kk 58 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTKK 58 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHTC
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhcC
Confidence 457899999999999999999999999999999999999999976443
No 59
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.04 E-value=2.2e-10 Score=83.62 Aligned_cols=57 Identities=18% Similarity=0.244 Sum_probs=48.3
Q ss_pred CCcCCCCCHHHHHHHHHHHHHhC----CChhHHhccCCCCCHHHHHHHHHHHHHHHHhhCCC
Q 024849 64 DLKRGLLNEAEEQLVIDLHARLG----NRWSKIAARLPGRTDNEIKNHWNTHIKKKLIKMGI 121 (261)
Q Consensus 64 ~l~k~~WT~EED~~L~~lv~~~G----~~W~~IA~~l~gRT~~q~k~Rw~~~lk~~~~k~~~ 121 (261)
..+.++||.||+++|.+++.+|+ .+|.+||+++ |||..+|++||+.+.+...+..+.
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d~~~~~G~ 65 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDSVTCSPGM 65 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHSCCCCSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHhcCccCCC
Confidence 45678999999999999999997 5799999998 999999999999887765443343
No 60
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.97 E-value=7.1e-11 Score=90.29 Aligned_cols=48 Identities=17% Similarity=0.338 Sum_probs=43.2
Q ss_pred ccCCCCHHHHHHHHHHHHHhC---CCCccccccccCcccccccccccccccc
Q 024849 13 KKGPWTADEDKKLVTFILTHG---HCCWRAVPKLAGLRRCGKSCRLRWTNYL 61 (261)
Q Consensus 13 kkg~WT~eED~~L~~lv~~~g---~~~W~~Ia~~~~~~Rt~~qCr~Rw~~~L 61 (261)
.+++||+|||++|.+++..|| ...|.+||+.+| |||+.||+.||.+++
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vp-GRT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEVKKHYEILV 57 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST-TCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 368999999999999999997 357999999999 999999999998764
No 61
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.76 E-value=7.5e-09 Score=90.24 Aligned_cols=49 Identities=12% Similarity=0.232 Sum_probs=45.6
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCChhHHhccCCCCCHHHHHHHHHHHHHH
Q 024849 66 KRGLLNEAEEQLVIDLHARLGNRWSKIAARLPGRTDNEIKNHWNTHIKK 114 (261)
Q Consensus 66 ~k~~WT~EED~~L~~lv~~~G~~W~~IA~~l~gRT~~q~k~Rw~~~lk~ 114 (261)
...+||.||+.++++++.+||++|..||+.+++||..|||++|++..++
T Consensus 132 ~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 132 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 4568999999999999999999999999999999999999999877765
No 62
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.74 E-value=2.9e-09 Score=74.98 Aligned_cols=51 Identities=14% Similarity=0.177 Sum_probs=45.3
Q ss_pred cCCCCccCCCCHHHHHHHHHHHHHhCCCCccccccccCccccccccccccccc
Q 024849 8 DKLGVKKGPWTADEDKKLVTFILTHGHCCWRAVPKLAGLRRCGKSCRLRWTNY 60 (261)
Q Consensus 8 ~kp~ikkg~WT~eED~~L~~lv~~~g~~~W~~Ia~~~~~~Rt~~qCr~Rw~~~ 60 (261)
++.....++||++|++++.+++..||. +|..||++|+ +|+..||+.+|...
T Consensus 6 ~~~r~~~~~WT~eE~~~F~~~~~~~gk-~w~~Ia~~l~-~rt~~~~v~~Yy~~ 56 (61)
T 2eqr_A 6 SGDRQFMNVWTDHEKEIFKDKFIQHPK-NFGLIASYLE-RKSVPDCVLYYYLT 56 (61)
T ss_dssp CCCCSCCCSCCHHHHHHHHHHHHHSTT-CHHHHHHHCT-TSCHHHHHHHHHHH
T ss_pred ccccccCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcC-CCCHHHHHHHHHHh
Confidence 444556799999999999999999995 9999999998 99999999998754
No 63
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.74 E-value=2.5e-09 Score=75.42 Aligned_cols=49 Identities=14% Similarity=0.251 Sum_probs=43.7
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCccccc---cccCccccccccccccccccC
Q 024849 12 VKKGPWTADEDKKLVTFILTHGHCCWRAVP---KLAGLRRCGKSCRLRWTNYLR 62 (261)
Q Consensus 12 ikkg~WT~eED~~L~~lv~~~g~~~W~~Ia---~~~~~~Rt~~qCr~Rw~~~L~ 62 (261)
-++.+||+|||+.|++.|++||. +|..|+ .++. +||....++||++...
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~-~RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQK-GRRAVDLAHKYHRLIS 57 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCT-TCCHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCcc-CcccchHHHHHHHHHh
Confidence 36899999999999999999997 999999 4655 8999999999998643
No 64
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.65 E-value=2.7e-08 Score=72.57 Aligned_cols=47 Identities=26% Similarity=0.290 Sum_probs=42.6
Q ss_pred CCCCCHHHHHHHHHHHHHhCC----ChhHHhccCCCCCHHHHHHHHHHHHH
Q 024849 67 RGLLNEAEEQLVIDLHARLGN----RWSKIAARLPGRTDNEIKNHWNTHIK 113 (261)
Q Consensus 67 k~~WT~EED~~L~~lv~~~G~----~W~~IA~~l~gRT~~q~k~Rw~~~lk 113 (261)
...||.+|+.+|.+++..|+. +|.+||..+||||..+|+.||..+++
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~ 58 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPR 58 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 457999999999999999983 69999999999999999999987744
No 65
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.58 E-value=9.1e-09 Score=74.95 Aligned_cols=50 Identities=12% Similarity=0.193 Sum_probs=43.5
Q ss_pred CCCccCCCCHHHHHHHHHHHHHhC---CCCccccccccCcccccccccccccccc
Q 024849 10 LGVKKGPWTADEDKKLVTFILTHG---HCCWRAVPKLAGLRRCGKSCRLRWTNYL 61 (261)
Q Consensus 10 p~ikkg~WT~eED~~L~~lv~~~g---~~~W~~Ia~~~~~~Rt~~qCr~Rw~~~L 61 (261)
.+.+++.||.|||++|.+++..|+ ...|.+||+.+| |+..||+.||..+.
T Consensus 4 ~~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~lg--Rt~~eV~~~y~~L~ 56 (72)
T 2cqq_A 4 GSSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELG--RSVTDVTTKAKQLK 56 (72)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHT--SCHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHhC--CCHHHHHHHHHHHH
Confidence 345688999999999999999997 346999999975 99999999998654
No 66
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.53 E-value=7.8e-08 Score=67.34 Aligned_cols=47 Identities=17% Similarity=0.414 Sum_probs=42.2
Q ss_pred CCCCCHHHHHHHHHHHHHh--------CCC-hhHHhc-cCCCCCHHHHHHHHHHHHH
Q 024849 67 RGLLNEAEEQLVIDLHARL--------GNR-WSKIAA-RLPGRTDNEIKNHWNTHIK 113 (261)
Q Consensus 67 k~~WT~EED~~L~~lv~~~--------G~~-W~~IA~-~l~gRT~~q~k~Rw~~~lk 113 (261)
+.+||.|||..|++.|.+| |+. |.++|+ .+|++|-.++|+||...|+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 5689999999999999999 544 999999 7999999999999987664
No 67
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.52 E-value=5.3e-08 Score=93.56 Aligned_cols=46 Identities=13% Similarity=0.246 Sum_probs=42.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCChhHHhccCCCCCHHHHHHHHHHHHH
Q 024849 68 GLLNEAEEQLVIDLHARLGNRWSKIAARLPGRTDNEIKNHWNTHIK 113 (261)
Q Consensus 68 ~~WT~EED~~L~~lv~~~G~~W~~IA~~l~gRT~~q~k~Rw~~~lk 113 (261)
.+||.+|-.++++++.+||.+|..||+.+++||..|||++|....+
T Consensus 381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kk 426 (482)
T 2xag_B 381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRR 426 (482)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999999999999999999999999975433
No 68
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.44 E-value=3.8e-08 Score=68.95 Aligned_cols=48 Identities=23% Similarity=0.442 Sum_probs=43.0
Q ss_pred cCCCCHHHHHHHHHHHHHh--------CCCCcccccc-ccCccccccccccccccccC
Q 024849 14 KGPWTADEDKKLVTFILTH--------GHCCWRAVPK-LAGLRRCGKSCRLRWTNYLR 62 (261)
Q Consensus 14 kg~WT~eED~~L~~lv~~~--------g~~~W~~Ia~-~~~~~Rt~~qCr~Rw~~~L~ 62 (261)
|.+||+|||+.|+..|..| |..-|+.+|+ .++ ++|..+||+||.++|.
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~-~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLT-QHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSS-SCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCC-CCCHHHHHHHHHHHcc
Confidence 6799999999999999999 5556999999 676 9999999999998874
No 69
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.39 E-value=6.7e-08 Score=70.47 Aligned_cols=48 Identities=21% Similarity=0.413 Sum_probs=43.0
Q ss_pred cCCCCHHHHHHHHHHHHHhCC---CCccccccccCccccccccccccccccC
Q 024849 14 KGPWTADEDKKLVTFILTHGH---CCWRAVPKLAGLRRCGKSCRLRWTNYLR 62 (261)
Q Consensus 14 kg~WT~eED~~L~~lv~~~g~---~~W~~Ia~~~~~~Rt~~qCr~Rw~~~L~ 62 (261)
...||.+|+++|.+++..|+. .+|..||+.+| +|+..+|+.||...+.
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~-gKT~eE~~~hY~~l~~ 58 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG-SRSPEECQRKYMENPR 58 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT-TSCHHHHHHHHHHSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcC-CCCHHHHHHHHHHHHh
Confidence 468999999999999999974 46999999999 8999999999997654
No 70
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=98.26 E-value=2.1e-07 Score=67.61 Aligned_cols=43 Identities=26% Similarity=0.353 Sum_probs=38.8
Q ss_pred CCCCCHHHHHHHHHHHHHhCC----ChhHHhccCCCCCHHHHHHHHH
Q 024849 67 RGLLNEAEEQLVIDLHARLGN----RWSKIAARLPGRTDNEIKNHWN 109 (261)
Q Consensus 67 k~~WT~EED~~L~~lv~~~G~----~W~~IA~~l~gRT~~q~k~Rw~ 109 (261)
..+||.+|+++|..++.+|+. +|.+||+.+||||..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 457999999999999999984 7999999999999999999985
No 71
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.25 E-value=2.1e-07 Score=81.11 Aligned_cols=49 Identities=22% Similarity=0.351 Sum_probs=44.9
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCccccccccCccccccccccccccccC
Q 024849 12 VKKGPWTADEDKKLVTFILTHGHCCWRAVPKLAGLRRCGKSCRLRWTNYLR 62 (261)
Q Consensus 12 ikkg~WT~eED~~L~~lv~~~g~~~W~~Ia~~~~~~Rt~~qCr~Rw~~~L~ 62 (261)
....+||.||++.+++++.+||. +|..||+.++ +||..||+.+|.++..
T Consensus 131 k~s~~WTeEE~~lFleAl~kYGK-DW~~IAk~Vg-TKT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 131 KCNARWTTEEQLLAVQAIRKYGR-DFQAISDVIG-NKSVVQVKNFFVNYRR 179 (235)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHSS-CHHHHHHHHS-SCCHHHHHHHHHHTTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 34789999999999999999995 9999999999 9999999999998754
No 72
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.22 E-value=2.8e-06 Score=60.01 Aligned_cols=49 Identities=14% Similarity=0.179 Sum_probs=44.7
Q ss_pred CCCCcCCCCCHHHHHHHHHHHHHhCCChhHHhc-cCCCCCHHHHHHHHHH
Q 024849 62 RPDLKRGLLNEAEEQLVIDLHARLGNRWSKIAA-RLPGRTDNEIKNHWNT 110 (261)
Q Consensus 62 ~p~l~k~~WT~EED~~L~~lv~~~G~~W~~IA~-~l~gRT~~q~k~Rw~~ 110 (261)
.|.+...+||+||-.+..+++.+||.+|..|++ .+++||..+|...|..
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYY 53 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhc
Confidence 367778899999999999999999999999999 5899999999988864
No 73
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.20 E-value=2.8e-06 Score=63.90 Aligned_cols=49 Identities=14% Similarity=0.286 Sum_probs=44.7
Q ss_pred CCCCHHHHHHHHHHHHHhCC---ChhHHhccCCCCCHHHHHHHHHHHHHHHH
Q 024849 68 GLLNEAEEQLVIDLHARLGN---RWSKIAARLPGRTDNEIKNHWNTHIKKKL 116 (261)
Q Consensus 68 ~~WT~EED~~L~~lv~~~G~---~W~~IA~~l~gRT~~q~k~Rw~~~lk~~~ 116 (261)
-.||.|||..|+...++-|. .|..||+.|.+|+.+||++||+.+++-.-
T Consensus 34 vlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf~ 85 (95)
T 1ug2_A 34 VLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFH 85 (95)
T ss_dssp SSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHH
T ss_pred EEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 35999999999999999996 79999999999999999999999887653
No 74
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=97.38 E-value=3.9e-07 Score=65.00 Aligned_cols=45 Identities=16% Similarity=0.386 Sum_probs=42.0
Q ss_pred CCCHHHHHHHHHHHHHhCC---ChhHHhccCCCCCHHHHHHHHHHHHHH
Q 024849 69 LLNEAEEQLVIDLHARLGN---RWSKIAARLPGRTDNEIKNHWNTHIKK 114 (261)
Q Consensus 69 ~WT~EED~~L~~lv~~~G~---~W~~IA~~l~gRT~~q~k~Rw~~~lk~ 114 (261)
.||.|||..|+..+++-|. .|..||+.| +||++||.+||+.+++-
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~L 63 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMKL 63 (70)
Confidence 5999999999999999996 799999999 99999999999988764
No 75
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=98.07 E-value=5.1e-06 Score=75.68 Aligned_cols=102 Identities=19% Similarity=0.183 Sum_probs=80.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCccccccccCcccccccccc-------ccccc---------------------------
Q 024849 15 GPWTADEDKKLVTFILTHGHCCWRAVPKLAGLRRCGKSCRL-------RWTNY--------------------------- 60 (261)
Q Consensus 15 g~WT~eED~~L~~lv~~~g~~~W~~Ia~~~~~~Rt~~qCr~-------Rw~~~--------------------------- 60 (261)
+.||..+...++.++.+||..+|..||..|+ +++...++. ||...
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~-~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l 189 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVE-GKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKAL 189 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSST-TCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999999999999998 788766643 22100
Q ss_pred ---------------c-CCCCcCCCCCHHHHHHHHHHHHHhCC----ChhHHhc------------cCCCCCHHHHHHHH
Q 024849 61 ---------------L-RPDLKRGLLNEAEEQLVIDLHARLGN----RWSKIAA------------RLPGRTDNEIKNHW 108 (261)
Q Consensus 61 ---------------L-~p~l~k~~WT~EED~~L~~lv~~~G~----~W~~IA~------------~l~gRT~~q~k~Rw 108 (261)
+ -+..+...||++||..|+-++.+||- .|..|.. ++..||+.+|..|.
T Consensus 190 ~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc 269 (304)
T 1ofc_X 190 DQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRC 269 (304)
T ss_dssp HHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHH
T ss_pred HHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHH
Confidence 0 02334567999999999999999994 5999973 34579999999999
Q ss_pred HHHHHHHHh
Q 024849 109 NTHIKKKLI 117 (261)
Q Consensus 109 ~~~lk~~~~ 117 (261)
+.+++-..+
T Consensus 270 ~tLi~~iek 278 (304)
T 1ofc_X 270 NTLITLIER 278 (304)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999876433
No 76
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=98.04 E-value=9.6e-07 Score=64.09 Aligned_cols=44 Identities=14% Similarity=0.314 Sum_probs=38.9
Q ss_pred cCCCCHHHHHHHHHHHHHhCCC---CccccccccCccccccccccccc
Q 024849 14 KGPWTADEDKKLVTFILTHGHC---CWRAVPKLAGLRRCGKSCRLRWT 58 (261)
Q Consensus 14 kg~WT~eED~~L~~lv~~~g~~---~W~~Ia~~~~~~Rt~~qCr~Rw~ 58 (261)
.+.||.+|+++|.+++..|+.. .|.+||+.+| |||..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~Vp-GKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVK-GRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSC-SSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcC-CCCHHHHHHHHH
Confidence 5689999999999999999643 6999999999 999999999986
No 77
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=97.92 E-value=2.7e-05 Score=59.03 Aligned_cols=62 Identities=21% Similarity=0.271 Sum_probs=52.3
Q ss_pred cccccccCCCCcCCCCCHHHHHHHHHHHHHhCCChhHHhccCC-----CCCHHHHHHHHHHHHHHHHhhCC
Q 024849 55 LRWTNYLRPDLKRGLLNEAEEQLVIDLHARLGNRWSKIAARLP-----GRTDNEIKNHWNTHIKKKLIKMG 120 (261)
Q Consensus 55 ~Rw~~~L~p~l~k~~WT~EED~~L~~lv~~~G~~W~~IA~~l~-----gRT~~q~k~Rw~~~lk~~~~k~~ 120 (261)
+.|..+|. ...||.||-..|++|+++|+-+|..|+..+. +||-.++|.||..+.++.++...
T Consensus 22 eEY~~~L~----~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r~ 88 (93)
T 4iej_A 22 QEYQLYLH----DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRA 88 (93)
T ss_dssp HHHHHHTC----BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhC----CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhhC
Confidence 34556664 3689999999999999999999999999873 79999999999998888766543
No 78
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.89 E-value=5.4e-06 Score=58.54 Aligned_cols=50 Identities=18% Similarity=0.123 Sum_probs=45.3
Q ss_pred cCCCCccCCCCHHHHHHHHHHHHHhCCCCcccccc-ccCcccccccccccccc
Q 024849 8 DKLGVKKGPWTADEDKKLVTFILTHGHCCWRAVPK-LAGLRRCGKSCRLRWTN 59 (261)
Q Consensus 8 ~kp~ikkg~WT~eED~~L~~lv~~~g~~~W~~Ia~-~~~~~Rt~~qCr~Rw~~ 59 (261)
..|.+....||+||-++..+++.+||. +|..|++ +++ +|+..||...|..
T Consensus 3 ~~p~~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~-~Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 3 SGSSGIEKCWTEDEVKRFVKGLRQYGK-NFFRIRKELLP-NKETGELITFYYY 53 (63)
T ss_dssp CCCCCCCCSCCHHHHHHHHHHHHHTCS-CHHHHHHHSCT-TSCHHHHHHHHHH
T ss_pred CCCCcCCCCcCHHHHHHHHHHHHHhCc-cHHHHHHHHcC-CCcHHHHHHHHhc
Confidence 568888999999999999999999996 9999998 688 8999999988754
No 79
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.74 E-value=5.6e-05 Score=54.38 Aligned_cols=44 Identities=16% Similarity=0.185 Sum_probs=40.6
Q ss_pred CCCCCHHHHHHHHHHHHHhCCChhHHhc-cCCCCCHHHHHHHHHH
Q 024849 67 RGLLNEAEEQLVIDLHARLGNRWSKIAA-RLPGRTDNEIKNHWNT 110 (261)
Q Consensus 67 k~~WT~EED~~L~~lv~~~G~~W~~IA~-~l~gRT~~q~k~Rw~~ 110 (261)
..+||+||-.+..+++.+||.+|..|++ .|++||..+|...|..
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM 52 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHh
Confidence 3579999999999999999999999999 5899999999998863
No 80
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.73 E-value=4.4e-05 Score=58.05 Aligned_cols=44 Identities=16% Similarity=0.113 Sum_probs=41.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCCChhHHhccCCCCCHHHHHHHHHH
Q 024849 67 RGLLNEAEEQLVIDLHARLGNRWSKIAARLPGRTDNEIKNHWNT 110 (261)
Q Consensus 67 k~~WT~EED~~L~~lv~~~G~~W~~IA~~l~gRT~~q~k~Rw~~ 110 (261)
...||+||-.+..+++..||.+|..||..||+||..+|...|..
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~ 86 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYL 86 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhc
Confidence 46799999999999999999999999999999999999998864
No 81
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.42 E-value=4.3e-05 Score=73.45 Aligned_cols=46 Identities=22% Similarity=0.368 Sum_probs=42.9
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCCCccccccccCccccccccccccccc
Q 024849 13 KKGPWTADEDKKLVTFILTHGHCCWRAVPKLAGLRRCGKSCRLRWTNY 60 (261)
Q Consensus 13 kkg~WT~eED~~L~~lv~~~g~~~W~~Ia~~~~~~Rt~~qCr~Rw~~~ 60 (261)
...+||.+|-+++++++.+||. +|..||+.++ +|+..||+..|.++
T Consensus 379 ~~~~WT~eE~~~f~~al~~yGk-dw~~IA~~Vg-TKT~~Qvk~fy~~~ 424 (482)
T 2xag_B 379 CNARWTTEEQLLAVQAIRKYGR-DFQAISDVIG-NKSVVQVKNFFVNY 424 (482)
T ss_dssp CCSCCCHHHHHHHHHHHHHHTT-CHHHHHHHHS-SCCHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 4689999999999999999996 9999999999 99999999998765
No 82
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.23 E-value=7.8e-05 Score=56.60 Aligned_cols=47 Identities=13% Similarity=0.211 Sum_probs=41.5
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCCCccccccccC----ccccccccccccccc
Q 024849 13 KKGPWTADEDKKLVTFILTHGHCCWRAVPKLAG----LRRCGKSCRLRWTNY 60 (261)
Q Consensus 13 kkg~WT~eED~~L~~lv~~~g~~~W~~Ia~~~~----~~Rt~~qCr~Rw~~~ 60 (261)
...+||.||++.|++++++|+. .|..|+.... .+||..+.++||..+
T Consensus 29 ~~~~WTkEETd~Lf~L~~~fdl-RW~vI~DRy~~~~~~~Rt~EdLK~RyY~v 79 (93)
T 3hm5_A 29 HDDAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHI 79 (93)
T ss_dssp CBTTBCHHHHHHHHHHHHHTTT-CHHHHHHHSCTTTSCCCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCC-CeeeehhhhccCCCCCCCHHHHHHHHHHH
Confidence 4489999999999999999996 9999998873 379999999999864
No 83
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.14 E-value=0.00014 Score=52.31 Aligned_cols=45 Identities=11% Similarity=0.079 Sum_probs=40.5
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCCCcccccc-ccCcccccccccccccc
Q 024849 13 KKGPWTADEDKKLVTFILTHGHCCWRAVPK-LAGLRRCGKSCRLRWTN 59 (261)
Q Consensus 13 kkg~WT~eED~~L~~lv~~~g~~~W~~Ia~-~~~~~Rt~~qCr~Rw~~ 59 (261)
....||++|-.+..+++..||. +|..|++ +++ +|+..+|...|..
T Consensus 7 ~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~-~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 7 GMEEWSASEACLFEEALEKYGK-DFNDIRQDFLP-WKSLTSIIEYYYM 52 (70)
T ss_dssp SSCCCCHHHHHHHHHHHHHTCS-CHHHHHHTTCS-SSCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCc-cHHHHHHHHcC-CCCHHHHHHHHHh
Confidence 4678999999999999999996 9999999 688 9999999987753
No 84
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.14 E-value=0.00038 Score=51.53 Aligned_cols=49 Identities=14% Similarity=0.380 Sum_probs=40.4
Q ss_pred CCCCCHHHHHHHHHHHHHhC----------CChhHHhccCC----CCCHHHHHHHHHHHHHHH
Q 024849 67 RGLLNEAEEQLVIDLHARLG----------NRWSKIAARLP----GRTDNEIKNHWNTHIKKK 115 (261)
Q Consensus 67 k~~WT~EED~~L~~lv~~~G----------~~W~~IA~~l~----gRT~~q~k~Rw~~~lk~~ 115 (261)
...||.+|-..||+++..+. ..|..||..|. .||+.||+.+|.++.+..
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Y 66 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEF 66 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 35799999999999997532 14999999873 699999999998877764
No 85
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.10 E-value=0.00015 Score=55.03 Aligned_cols=44 Identities=14% Similarity=0.315 Sum_probs=40.2
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCccccccccCcccccccccccccc
Q 024849 14 KGPWTADEDKKLVTFILTHGHCCWRAVPKLAGLRRCGKSCRLRWTN 59 (261)
Q Consensus 14 kg~WT~eED~~L~~lv~~~g~~~W~~Ia~~~~~~Rt~~qCr~Rw~~ 59 (261)
...||+||.++..+++..||. +|..||+.++ +|+..+|...|..
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK-~F~~Ia~~l~-~Kt~~~cV~~YY~ 86 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPK-NFGLIASFLE-RKTVAECVLYYYL 86 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTT-CHHHHHHTCT-TCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCC-CHHHHHHHcC-CCCHHHHHHHHhc
Confidence 578999999999999999995 9999999998 9999999988753
No 86
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=96.94 E-value=0.0027 Score=54.13 Aligned_cols=46 Identities=13% Similarity=0.170 Sum_probs=37.4
Q ss_pred CCCHHHHHHHHHHHHHhC-CChhHHhcc--C------------CCCCHHHHHHHHHHHHHH
Q 024849 69 LLNEAEEQLVIDLHARLG-NRWSKIAAR--L------------PGRTDNEIKNHWNTHIKK 114 (261)
Q Consensus 69 ~WT~EED~~L~~lv~~~G-~~W~~IA~~--l------------~gRT~~q~k~Rw~~~lk~ 114 (261)
.||.+||..|+..+.+|| ++|..|..- + ..++...+..|-..+|+-
T Consensus 136 ~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~~ 196 (211)
T 4b4c_A 136 DWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIKL 196 (211)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCHHHHHHCSSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCcCcHHHHHhChhcCccccccccccccCCChHHHHHHHHHHHHH
Confidence 599999999999999999 899999652 1 125677899998877764
No 87
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.90 E-value=7.7e-05 Score=55.36 Aligned_cols=49 Identities=24% Similarity=0.590 Sum_probs=39.2
Q ss_pred ccCCCCHHHHHHHHHHHHHhCC---------CCcccccccc---Ccccccccccccccccc
Q 024849 13 KKGPWTADEDKKLVTFILTHGH---------CCWRAVPKLA---GLRRCGKSCRLRWTNYL 61 (261)
Q Consensus 13 kkg~WT~eED~~L~~lv~~~g~---------~~W~~Ia~~~---~~~Rt~~qCr~Rw~~~L 61 (261)
+...||.+|...|+.+...... .-|..||..| |..|++.||+.+|.+..
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~ 63 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL 63 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4678999999999999975311 1499999865 45799999999998753
No 88
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=96.86 E-value=0.0024 Score=59.55 Aligned_cols=104 Identities=16% Similarity=0.218 Sum_probs=78.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCccccccccCcccccccccc-------ccccc---------------------------
Q 024849 15 GPWTADEDKKLVTFILTHGHCCWRAVPKLAGLRRCGKSCRL-------RWTNY--------------------------- 60 (261)
Q Consensus 15 g~WT~eED~~L~~lv~~~g~~~W~~Ia~~~~~~Rt~~qCr~-------Rw~~~--------------------------- 60 (261)
+.||.-+=..++.+..+||..+-..||..|+.+++...++. ||...
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~L 203 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEAL 203 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46999999999999999999889999998864566655542 11110
Q ss_pred -------------c----CCC-CcCCCCCHHHHHHHHHHHHHhC----CChhHHhcc------------CCCCCHHHHHH
Q 024849 61 -------------L----RPD-LKRGLLNEAEEQLVIDLHARLG----NRWSKIAAR------------LPGRTDNEIKN 106 (261)
Q Consensus 61 -------------L----~p~-l~k~~WT~EED~~L~~lv~~~G----~~W~~IA~~------------l~gRT~~q~k~ 106 (261)
| .++ .+...||.+||..|+-++.+|| +.|.+|-.. +..||+..|..
T Consensus 204 ~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~r 283 (374)
T 2y9y_A 204 RRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELAR 283 (374)
T ss_dssp HHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHH
T ss_pred HHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHH
Confidence 1 011 1345799999999999999999 459999443 35699999999
Q ss_pred HHHHHHHHHHhh
Q 024849 107 HWNTHIKKKLIK 118 (261)
Q Consensus 107 Rw~~~lk~~~~k 118 (261)
|...+++-..+.
T Consensus 284 Rc~tLi~~IeKE 295 (374)
T 2y9y_A 284 RGNTLLQCLEKE 295 (374)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHH
Confidence 999999765443
No 89
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=95.11 E-value=0.00092 Score=47.64 Aligned_cols=47 Identities=11% Similarity=0.170 Sum_probs=40.3
Q ss_pred ccCCCCHHHHHHHHHHHHHhCC--CCccccccccCcccccccccccccccc
Q 024849 13 KKGPWTADEDKKLVTFILTHGH--CCWRAVPKLAGLRRCGKSCRLRWTNYL 61 (261)
Q Consensus 13 kkg~WT~eED~~L~~lv~~~g~--~~W~~Ia~~~~~~Rt~~qCr~Rw~~~L 61 (261)
.--.||.|||..++...++-|. ..|..||+.++ |++.|+..||+..+
T Consensus 13 ~vvlWTReeDR~IL~~cq~~G~s~~tfa~iA~~Ln--ks~~QV~~RF~~Lm 61 (70)
T 2lr8_A 13 IIILWTRNDDRVILLECQKRGPSSKTFAYLAAKLD--KNPNQVSERFQQLM 61 (70)
Confidence 3457999999999999998875 36999999884 99999999998754
No 90
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=95.87 E-value=0.0026 Score=47.78 Aligned_cols=46 Identities=17% Similarity=0.364 Sum_probs=40.1
Q ss_pred ccCCCCHHHHHHHHHHHHHhCC--CCccccccccCcccccccccccccc
Q 024849 13 KKGPWTADEDKKLVTFILTHGH--CCWRAVPKLAGLRRCGKSCRLRWTN 59 (261)
Q Consensus 13 kkg~WT~eED~~L~~lv~~~g~--~~W~~Ia~~~~~~Rt~~qCr~Rw~~ 59 (261)
+-..||.|||..++...++-|. ..|..||+.++ +|++.|+.+|++.
T Consensus 32 ~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~-Nks~nqV~~RFq~ 79 (95)
T 1ug2_A 32 KVVLWTREADRVILTMCQEQGAQPHTFSVISQQLG-NKTPVEVSHRFRE 79 (95)
T ss_dssp CCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHS-SCCHHHHHHHHHH
T ss_pred EEEEeccccCHHHHHHHHhcCCChhHHHHHHHHHc-cCCHHHHHHHHHH
Confidence 3456999999999999999874 36999999998 8999999999964
No 91
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=94.82 E-value=0.071 Score=37.50 Aligned_cols=47 Identities=17% Similarity=0.132 Sum_probs=40.1
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCC---hhHHhccC--CCCCHHHHHHHHHHHH
Q 024849 66 KRGLLNEAEEQLVIDLHARLGNR---WSKIAARL--PGRTDNEIKNHWNTHI 112 (261)
Q Consensus 66 ~k~~WT~EED~~L~~lv~~~G~~---W~~IA~~l--~gRT~~q~k~Rw~~~l 112 (261)
.+-.||+|.-...+++|.++|.. +..|.+.| +|.|..+|+.|.+.+.
T Consensus 6 ~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR 57 (64)
T 1irz_A 6 PRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFR 57 (64)
T ss_dssp SSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 45679999999999999999954 78998876 7999999999976543
No 92
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=94.43 E-value=0.031 Score=47.43 Aligned_cols=39 Identities=23% Similarity=0.439 Sum_probs=32.8
Q ss_pred CccccCCCCccCCCCHHHHHHHHHHHHHhCCCCcccccc
Q 024849 4 QPCCDKLGVKKGPWTADEDKKLVTFILTHGHCCWRAVPK 42 (261)
Q Consensus 4 ~~~~~kp~ikkg~WT~eED~~L~~lv~~~g~~~W~~Ia~ 42 (261)
-+++.++.-....||.+||..|+..|.+||.++|..|-.
T Consensus 124 i~~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~ 162 (211)
T 4b4c_A 124 IPCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKM 162 (211)
T ss_dssp CCSCCCCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cCCCCCCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHHh
Confidence 355556666667899999999999999999999999975
No 93
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=94.02 E-value=0.017 Score=43.63 Aligned_cols=48 Identities=13% Similarity=0.219 Sum_probs=40.1
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCccccccccC----ccccccccccccccc
Q 024849 12 VKKGPWTADEDKKLVTFILTHGHCCWRAVPKLAG----LRRCGKSCRLRWTNY 60 (261)
Q Consensus 12 ikkg~WT~eED~~L~~lv~~~g~~~W~~Ia~~~~----~~Rt~~qCr~Rw~~~ 60 (261)
++...||.||...|..++++|.- .|..|+.... ..|+..+.++||..+
T Consensus 28 L~~~~WT~eETd~LfdLc~~fdl-Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V 79 (93)
T 4iej_A 28 LHDDAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHI 79 (93)
T ss_dssp TCBTTBCHHHHHHHHHHHHHTTT-CHHHHHHHCCTTTSCCCCHHHHHHHHHHH
T ss_pred hCCCCCCHHHHHHHHHHHHHcCC-CeEEEeeccccCCCCCCCHHHHHHHHHHH
Confidence 34578999999999999999995 9999997653 268888999998764
No 94
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=93.79 E-value=0.11 Score=47.06 Aligned_cols=47 Identities=15% Similarity=0.213 Sum_probs=41.3
Q ss_pred CCCCHHHHHHHHHHHHHhCC-ChhHHhccCCCCCHHHHHHHHHHHHHH
Q 024849 68 GLLNEAEEQLVIDLHARLGN-RWSKIAARLPGRTDNEIKNHWNTHIKK 114 (261)
Q Consensus 68 ~~WT~EED~~L~~lv~~~G~-~W~~IA~~l~gRT~~q~k~Rw~~~lk~ 114 (261)
+.||..+....+.++.+||. .|..||..|+|+|...|+..+.....+
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~r 158 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWER 158 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 46999999999999999994 799999999999999997776665554
No 95
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=85.98 E-value=0.61 Score=41.56 Aligned_cols=28 Identities=29% Similarity=0.634 Sum_probs=26.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCcccccc
Q 024849 15 GPWTADEDKKLVTFILTHGHCCWRAVPK 42 (261)
Q Consensus 15 g~WT~eED~~L~~lv~~~g~~~W~~Ia~ 42 (261)
..|+.+||..|+..|-+||.++|.+|..
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~ 196 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRD 196 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence 4599999999999999999999999975
No 96
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=84.33 E-value=0.42 Score=33.49 Aligned_cols=47 Identities=11% Similarity=0.081 Sum_probs=34.6
Q ss_pred CCccCCCCHHHHHHHHHHHHHhCCCC---ccccccccC-ccccccccccccc
Q 024849 11 GVKKGPWTADEDKKLVTFILTHGHCC---WRAVPKLAG-LRRCGKSCRLRWT 58 (261)
Q Consensus 11 ~ikkg~WT~eED~~L~~lv~~~g~~~---W~~Ia~~~~-~~Rt~~qCr~Rw~ 58 (261)
...+-.||+|..++...+|...|. + ++.|.+.|+ .+.|..++.-+.+
T Consensus 4 ~k~r~~WT~elH~~Fv~Av~~LG~-~~AtPk~Il~~M~v~gLT~~~VkSHLQ 54 (64)
T 1irz_A 4 KKPRVLWTHELHNKFLAAVDHLGV-ERAVPKKILDLMNVDKLTRENVASHLQ 54 (64)
T ss_dssp CCSSCSSCHHHHHHHHHHHHHHCT-TTCCHHHHHHHHCCTTCCHHHHHHHHH
T ss_pred CCCCCcCCHHHHHHHHHHHHHhCC-CCCCcHHHHHHcCCCCCCHHHHHHHHH
Confidence 346889999999999999999994 4 567777765 2456566655443
No 97
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=79.08 E-value=4.3 Score=36.00 Aligned_cols=48 Identities=15% Similarity=0.288 Sum_probs=41.7
Q ss_pred CCCCCHHHHHHHHHHHHHhC---CChhHHhcc--CCCCCHHHHHHHHHHHHHH
Q 024849 67 RGLLNEAEEQLVIDLHARLG---NRWSKIAAR--LPGRTDNEIKNHWNTHIKK 114 (261)
Q Consensus 67 k~~WT~EED~~L~~lv~~~G---~~W~~IA~~--l~gRT~~q~k~Rw~~~lk~ 114 (261)
+++||..|-..|+..+.+|| .+|..|+.. |+.|+...++.-|+.++..
T Consensus 3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~~li~~ 55 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDEMMEA 55 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHHHHHHH
Confidence 57899999999999999999 589999764 6899999999888876654
No 98
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=68.56 E-value=7.9 Score=28.98 Aligned_cols=40 Identities=18% Similarity=0.378 Sum_probs=30.1
Q ss_pred HHHHHHHHHhC--------CChhHHhccCCCCC----HHHHHHHHHHHHHHH
Q 024849 76 QLVIDLHARLG--------NRWSKIAARLPGRT----DNEIKNHWNTHIKKK 115 (261)
Q Consensus 76 ~~L~~lv~~~G--------~~W~~IA~~l~gRT----~~q~k~Rw~~~lk~~ 115 (261)
-.|..+|.+.| +.|.+||..|.--. ..++|..|..+|-+.
T Consensus 47 ~~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~y 98 (107)
T 2lm1_A 47 YTLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHPF 98 (107)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHH
Confidence 45777777777 36999999983322 568899999888764
No 99
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=68.17 E-value=3.5 Score=31.67 Aligned_cols=40 Identities=18% Similarity=0.283 Sum_probs=31.3
Q ss_pred HHHHHHHHHhC--------CChhHHhccCCCCCHHHHHHHHHHHHHHH
Q 024849 76 QLVIDLHARLG--------NRWSKIAARLPGRTDNEIKNHWNTHIKKK 115 (261)
Q Consensus 76 ~~L~~lv~~~G--------~~W~~IA~~l~gRT~~q~k~Rw~~~lk~~ 115 (261)
-+|..+|.+.| +.|.+||..|.--....+|..|..+|-+.
T Consensus 52 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~y 99 (116)
T 2li6_A 52 FYLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPY 99 (116)
T ss_dssp THHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHSHH
T ss_pred HHHHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence 35778888887 36999999984444789999999988764
No 100
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=68.02 E-value=6.6 Score=26.02 Aligned_cols=44 Identities=18% Similarity=0.177 Sum_probs=33.0
Q ss_pred CCHHHHHHHHHHHHHhCCChhHHhccCCCCCHHHHHHHHHHHHHHH
Q 024849 70 LNEAEEQLVIDLHARLGNRWSKIAARLPGRTDNEIKNHWNTHIKKK 115 (261)
Q Consensus 70 WT~EED~~L~~lv~~~G~~W~~IA~~l~gRT~~q~k~Rw~~~lk~~ 115 (261)
.++ .+..++.++-..|-.+.+||..+ |-+...|+.+.+..+++-
T Consensus 16 L~~-~~r~il~l~~~~g~s~~eIA~~l-gis~~tv~~~~~ra~~~l 59 (70)
T 2o8x_A 16 LTT-DQREALLLTQLLGLSYADAAAVC-GCPVGTIRSRVARARDAL 59 (70)
T ss_dssp SCH-HHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHHH
T ss_pred CCH-HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 444 44555666666788999999999 889999999887665543
No 101
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=67.27 E-value=7.1 Score=29.97 Aligned_cols=40 Identities=18% Similarity=0.373 Sum_probs=30.4
Q ss_pred HHHHHHHHHhC--------CChhHHhccCCCCC----HHHHHHHHHHHHHHH
Q 024849 76 QLVIDLHARLG--------NRWSKIAARLPGRT----DNEIKNHWNTHIKKK 115 (261)
Q Consensus 76 ~~L~~lv~~~G--------~~W~~IA~~l~gRT----~~q~k~Rw~~~lk~~ 115 (261)
-+|..+|.+.| +.|.+||..|.--. ..++|..|..+|-+.
T Consensus 43 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~y 94 (117)
T 2jrz_A 43 YSLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYPY 94 (117)
T ss_dssp HHHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHH
Confidence 45778888887 36999999983222 568899999888764
No 102
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=65.67 E-value=10 Score=35.11 Aligned_cols=47 Identities=21% Similarity=0.292 Sum_probs=38.5
Q ss_pred CCCCHHHHHHHHHHHHHhCC-ChhHHhccCC-CCCHHHHHHHHHHHHHHH
Q 024849 68 GLLNEAEEQLVIDLHARLGN-RWSKIAARLP-GRTDNEIKNHWNTHIKKK 115 (261)
Q Consensus 68 ~~WT~EED~~L~~lv~~~G~-~W~~IA~~l~-gRT~~q~k~Rw~~~lk~~ 115 (261)
+.||.-+=..++.+..+||. .-..||..|. |+|...|+ +|...+=.+
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~-~Y~~vFw~R 172 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVR-AYAKAFWSN 172 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHH-HHHHHHHHT
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHH-HHHHHHHHh
Confidence 46888888999999999995 5999999997 99999999 555544443
No 103
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=64.15 E-value=8.7 Score=26.15 Aligned_cols=44 Identities=23% Similarity=0.353 Sum_probs=31.6
Q ss_pred CCHHHHHHHHHHHHH----hCCChhHHhccCCCCCHHHHHHHHHHHHHHH
Q 024849 70 LNEAEEQLVIDLHAR----LGNRWSKIAARLPGRTDNEIKNHWNTHIKKK 115 (261)
Q Consensus 70 WT~EED~~L~~lv~~----~G~~W~~IA~~l~gRT~~q~k~Rw~~~lk~~ 115 (261)
.++.| ..++.+.-- .|-.+.+||..+ |-|...|+.+....+++-
T Consensus 11 L~~~e-r~il~l~~~l~~~~~~s~~eIA~~l-~is~~tV~~~~~ra~~kL 58 (73)
T 1ku3_A 11 LSERE-AMVLKMRKGLIDGREHTLEEVGAYF-GVTRERIRQIENKALRKL 58 (73)
T ss_dssp SCHHH-HHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred CCHHH-HHHHHHHHhcccCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 44444 444445443 467899999999 999999999887666554
No 104
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=64.14 E-value=9.4 Score=29.51 Aligned_cols=40 Identities=23% Similarity=0.410 Sum_probs=30.1
Q ss_pred HHHHHHHHHhC--------CChhHHhccCCCC--C--HHHHHHHHHHHHHHH
Q 024849 76 QLVIDLHARLG--------NRWSKIAARLPGR--T--DNEIKNHWNTHIKKK 115 (261)
Q Consensus 76 ~~L~~lv~~~G--------~~W~~IA~~l~gR--T--~~q~k~Rw~~~lk~~ 115 (261)
-+|..+|.+.| +.|.+||..|.-. + ..++|..|..+|-+.
T Consensus 45 y~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~y 96 (122)
T 2eqy_A 45 FQLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNPY 96 (122)
T ss_dssp HHHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHH
Confidence 45778888887 3699999998322 2 468899999988774
No 105
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=63.10 E-value=9.8 Score=29.47 Aligned_cols=40 Identities=15% Similarity=0.244 Sum_probs=30.4
Q ss_pred HHHHHHHHHhC--------CChhHHhccCCCCC----HHHHHHHHHHHHHHH
Q 024849 76 QLVIDLHARLG--------NRWSKIAARLPGRT----DNEIKNHWNTHIKKK 115 (261)
Q Consensus 76 ~~L~~lv~~~G--------~~W~~IA~~l~gRT----~~q~k~Rw~~~lk~~ 115 (261)
-+|..+|.+.| +.|.+||..|.--+ ..++|..|..+|.+.
T Consensus 54 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~y 105 (125)
T 2cxy_A 54 FRLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFAF 105 (125)
T ss_dssp HHHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHH
Confidence 45777888887 36999999983222 468899999988874
No 106
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=59.65 E-value=8.6 Score=25.76 Aligned_cols=30 Identities=10% Similarity=0.143 Sum_probs=25.2
Q ss_pred hCCChhHHhccCCCCCHHHHHHHHHHHHHHH
Q 024849 85 LGNRWSKIAARLPGRTDNEIKNHWNTHIKKK 115 (261)
Q Consensus 85 ~G~~W~~IA~~l~gRT~~q~k~Rw~~~lk~~ 115 (261)
.|-.+.+||..+ |-|...|+.+....+++-
T Consensus 24 ~g~s~~eIA~~l-gis~~tV~~~~~ra~~kL 53 (68)
T 2p7v_B 24 TDYTLEEVGKQF-DVTRERIRQIEAKALRKL 53 (68)
T ss_dssp SCCCHHHHHHHH-TCCHHHHHHHHHHHHHGG
T ss_pred CCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 367899999999 999999999987766553
No 107
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=59.01 E-value=6.6 Score=30.55 Aligned_cols=41 Identities=17% Similarity=0.253 Sum_probs=31.8
Q ss_pred HHHHHHHHhCC--------ChhHHhccCCCCCHHHHHHHHHHHHHHHHh
Q 024849 77 LVIDLHARLGN--------RWSKIAARLPGRTDNEIKNHWNTHIKKKLI 117 (261)
Q Consensus 77 ~L~~lv~~~G~--------~W~~IA~~l~gRT~~q~k~Rw~~~lk~~~~ 117 (261)
+|..+|.+.|+ .|.+||..|.--....+|..|..+|-+.-.
T Consensus 52 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~yE~ 100 (123)
T 1kkx_A 52 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPYER 100 (123)
T ss_dssp HHHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHhccccccHHHHHHHHCCChHHHHHHHHHHHHHHHHH
Confidence 46677777773 599999998444489999999999988644
No 108
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=55.93 E-value=16 Score=28.38 Aligned_cols=40 Identities=15% Similarity=0.282 Sum_probs=30.9
Q ss_pred HHHHHHHHHhC--------CChhHHhccC--CCC---CHHHHHHHHHHHHHHH
Q 024849 76 QLVIDLHARLG--------NRWSKIAARL--PGR---TDNEIKNHWNTHIKKK 115 (261)
Q Consensus 76 ~~L~~lv~~~G--------~~W~~IA~~l--~gR---T~~q~k~Rw~~~lk~~ 115 (261)
-+|..+|.+.| +.|.+||..| +.. ...++|..|..+|.+.
T Consensus 55 ~~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~y 107 (128)
T 1c20_A 55 YELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPY 107 (128)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 45778888887 3699999998 222 2578999999998874
No 109
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=55.70 E-value=13 Score=28.81 Aligned_cols=80 Identities=16% Similarity=0.301 Sum_probs=51.1
Q ss_pred CCccCCCCHHHH--HHHHHHHHHhCCCCccccccccCccccccccccccccccCCCCcCCCCCHHHHHHHHHHHHHhC--
Q 024849 11 GVKKGPWTADED--KKLVTFILTHGHCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLNEAEEQLVIDLHARLG-- 86 (261)
Q Consensus 11 ~ikkg~WT~eED--~~L~~lv~~~g~~~W~~Ia~~~~~~Rt~~qCr~Rw~~~L~p~l~k~~WT~EED~~L~~lv~~~G-- 86 (261)
+.-+.+|.+.+. +.|..+....|. .-..|+.. + +|. |+ =-+|..+|.+.|
T Consensus 4 ~~~~~r~~~~~~Fl~~L~~F~~~rGt-pl~~~P~i-~-gk~-----------lD------------L~~Ly~~V~~~GG~ 57 (121)
T 2rq5_A 4 GSLGRRWGPNVQRLACIKKHLRSQGI-TMDELPLI-G-GCE-----------LD------------LACFFRLINEMGGM 57 (121)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHHHTTC-CCSSCCEE-T-TEE-----------CC------------HHHHHHHHHHTTSH
T ss_pred HHhhHhcCCcHHHHHHHHHHHHHcCC-CCCCCCcC-C-CEe-----------cc------------HHHHHHHHHHcCcH
Confidence 444678987765 445556666664 44444432 3 232 11 145778888888
Q ss_pred ------CChhHHhccC--CCC---CHHHHHHHHHHHHHHHH
Q 024849 87 ------NRWSKIAARL--PGR---TDNEIKNHWNTHIKKKL 116 (261)
Q Consensus 87 ------~~W~~IA~~l--~gR---T~~q~k~Rw~~~lk~~~ 116 (261)
+.|.+||..| |.- ....+|..|..+|-+.-
T Consensus 58 ~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~YE 98 (121)
T 2rq5_A 58 QQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSYD 98 (121)
T ss_dssp HHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHHH
T ss_pred HHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHHH
Confidence 3699999998 322 25688999998887754
No 110
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=54.55 E-value=15 Score=26.18 Aligned_cols=40 Identities=23% Similarity=0.297 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhCCChhHHhccCCCCCHHHHHHHHHHHHHH
Q 024849 74 EEQLVIDLHARLGNRWSKIAARLPGRTDNEIKNHWNTHIKK 114 (261)
Q Consensus 74 ED~~L~~lv~~~G~~W~~IA~~l~gRT~~q~k~Rw~~~lk~ 114 (261)
.+..++.++-..|-.-.+||+.| |-+...|+.|....+++
T Consensus 41 ~~r~vl~l~~~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~ 80 (92)
T 3hug_A 41 EHRAVIQRSYYRGWSTAQIATDL-GIAEGTVKSRLHYAVRA 80 (92)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 34445555555688899999999 99999999988765544
No 111
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=54.17 E-value=6.7 Score=28.79 Aligned_cols=40 Identities=25% Similarity=0.442 Sum_probs=28.6
Q ss_pred HHHHHHHHHhC--------CChhHHhccCCC---C-CHHHHHHHHHHHHHHH
Q 024849 76 QLVIDLHARLG--------NRWSKIAARLPG---R-TDNEIKNHWNTHIKKK 115 (261)
Q Consensus 76 ~~L~~lv~~~G--------~~W~~IA~~l~g---R-T~~q~k~Rw~~~lk~~ 115 (261)
-+|..+|.+.| +.|.+||..|.- - ...++|..|..+|-+-
T Consensus 39 ~~Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~~y 90 (96)
T 2jxj_A 39 YALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERILYPY 90 (96)
T ss_dssp HHHHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTTTHHH
T ss_pred HHHHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHHHHHH
Confidence 45777777776 469999998722 1 2568899898777653
No 112
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=49.90 E-value=18 Score=28.69 Aligned_cols=41 Identities=15% Similarity=0.266 Sum_probs=31.0
Q ss_pred HHHHHHHHHhC--------CChhHHhccC--CCC---CHHHHHHHHHHHHHHHH
Q 024849 76 QLVIDLHARLG--------NRWSKIAARL--PGR---TDNEIKNHWNTHIKKKL 116 (261)
Q Consensus 76 ~~L~~lv~~~G--------~~W~~IA~~l--~gR---T~~q~k~Rw~~~lk~~~ 116 (261)
-+|..+|.+.| +.|.+||..| +.. ...++|..|..+|-+.-
T Consensus 67 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~yE 120 (145)
T 2kk0_A 67 FMLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYE 120 (145)
T ss_dssp HHHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHHH
T ss_pred HHHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHHH
Confidence 45778888887 3699999998 222 25789999999887743
No 113
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=48.85 E-value=3 Score=32.53 Aligned_cols=57 Identities=12% Similarity=0.145 Sum_probs=41.5
Q ss_pred HHHHHHHHhCC-------CCccccccccCcccc----ccccccccccccCCCCcCCCCCHHHHHHHHHHHH
Q 024849 24 KLVTFILTHGH-------CCWRAVPKLAGLRRC----GKSCRLRWTNYLRPDLKRGLLNEAEEQLVIDLHA 83 (261)
Q Consensus 24 ~L~~lv~~~g~-------~~W~~Ia~~~~~~Rt----~~qCr~Rw~~~L~p~l~k~~WT~EED~~L~~lv~ 83 (261)
+|..+|.+.|. +.|..||..++...+ +...+..|.++|.|- ...+++|-..|.+-|.
T Consensus 46 ~Ly~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~Y---E~~~~~e~~~l~~~v~ 113 (121)
T 2rq5_A 46 CFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSY---DSLSPEEHRRLEKEVL 113 (121)
T ss_dssp HHHHHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHH---HHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHH---HCcCHHHHhhHHHHHH
Confidence 67788888763 369999998874432 246688899988763 2378899888887665
No 114
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=46.65 E-value=37 Score=22.78 Aligned_cols=42 Identities=24% Similarity=0.234 Sum_probs=31.1
Q ss_pred CCHHHHHHHHHHHHHhCCChhHHhccCCCCCHHHHHHHHHHHHHH
Q 024849 70 LNEAEEQLVIDLHARLGNRWSKIAARLPGRTDNEIKNHWNTHIKK 114 (261)
Q Consensus 70 WT~EED~~L~~lv~~~G~~W~~IA~~l~gRT~~q~k~Rw~~~lk~ 114 (261)
.|+.|-.. +.++ ..|-.-.+||..+ |-+...|+.+....+++
T Consensus 17 L~~~e~~v-l~l~-~~g~s~~eIA~~l-~is~~tV~~~~~r~~~k 58 (79)
T 1x3u_A 17 LSERERQV-LSAV-VAGLPNKSIAYDL-DISPRTVEVHRANVMAK 58 (79)
T ss_dssp HCHHHHHH-HHHH-TTTCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHH-HHHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 45555444 4455 5678899999999 88999999988766554
No 115
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=46.56 E-value=10 Score=28.40 Aligned_cols=39 Identities=18% Similarity=0.338 Sum_probs=28.9
Q ss_pred HHHHHHHHHhC--------CChhHHhccCC--CC---CHHHHHHHHHHHHHH
Q 024849 76 QLVIDLHARLG--------NRWSKIAARLP--GR---TDNEIKNHWNTHIKK 114 (261)
Q Consensus 76 ~~L~~lv~~~G--------~~W~~IA~~l~--gR---T~~q~k~Rw~~~lk~ 114 (261)
-.|..+|.+.| +.|.+||..|. .. ...++|..|..+|-+
T Consensus 36 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~ 87 (107)
T 1ig6_A 36 WTMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILP 87 (107)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 45777788877 46999999883 21 246899999988876
No 116
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=45.22 E-value=26 Score=24.65 Aligned_cols=44 Identities=14% Similarity=0.182 Sum_probs=30.8
Q ss_pred CCHHHHHHHHHHHHH----hCCChhHHhccCCCCCHHHHHHHHHHHHHHH
Q 024849 70 LNEAEEQLVIDLHAR----LGNRWSKIAARLPGRTDNEIKNHWNTHIKKK 115 (261)
Q Consensus 70 WT~EED~~L~~lv~~----~G~~W~~IA~~l~gRT~~q~k~Rw~~~lk~~ 115 (261)
.++.| ..++.+.-- .|-.+.+||..+ |-|...|+.+....+++-
T Consensus 19 L~~~e-r~vl~l~~~l~~~~~~s~~EIA~~l-gis~~tV~~~~~ra~~kL 66 (87)
T 1tty_A 19 LSPRE-AMVLRMRYGLLDGKPKTLEEVGQYF-NVTRERIRQIEVKALRKL 66 (87)
T ss_dssp SCHHH-HHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred CCHHH-HHHHHHHHccCCCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 34444 444444443 467899999999 999999999887666553
No 117
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=43.57 E-value=34 Score=24.51 Aligned_cols=44 Identities=23% Similarity=0.140 Sum_probs=33.8
Q ss_pred CCCHHHHHHHHHHHHHhCCChhHHhccCCCCCHHHHHHHHHHHHHHH
Q 024849 69 LLNEAEEQLVIDLHARLGNRWSKIAARLPGRTDNEIKNHWNTHIKKK 115 (261)
Q Consensus 69 ~WT~EED~~L~~lv~~~G~~W~~IA~~l~gRT~~q~k~Rw~~~lk~~ 115 (261)
..|+.|-+.|.- + ..|-.-.+||..+ |-+...|+.+....+++-
T Consensus 27 ~Lt~~e~~vl~l-~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~kL 70 (95)
T 3c57_A 27 GLTDQERTLLGL-L-SEGLTNKQIADRM-FLAEKTVKNYVSRLLAKL 70 (95)
T ss_dssp CCCHHHHHHHHH-H-HTTCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 467777655554 4 6788899999999 899999999887666553
No 118
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=43.49 E-value=27 Score=27.57 Aligned_cols=45 Identities=7% Similarity=0.097 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHhC-CChhHHhccCCCCCHHHHHHHHHHHHHHHHhh
Q 024849 73 AEEQLVIDLHARLG-NRWSKIAARLPGRTDNEIKNHWNTHIKKKLIK 118 (261)
Q Consensus 73 EED~~L~~lv~~~G-~~W~~IA~~l~gRT~~q~k~Rw~~~lk~~~~k 118 (261)
+-|.+|+.+.++-| -.+.+||+.+ |=|...|+.|.+.+.+..+.+
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~l-g~s~~tv~~rl~~L~~~g~i~ 48 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKV-GLSTTPCWRRIQKMEEDGVIR 48 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHH-TCCHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCee
Confidence 45778888888777 4699999999 999999999999888877655
No 119
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=42.70 E-value=33 Score=26.90 Aligned_cols=30 Identities=13% Similarity=0.082 Sum_probs=25.0
Q ss_pred hCCChhHHhccCCCCCHHHHHHHHHHHHHHH
Q 024849 85 LGNRWSKIAARLPGRTDNEIKNHWNTHIKKK 115 (261)
Q Consensus 85 ~G~~W~~IA~~l~gRT~~q~k~Rw~~~lk~~ 115 (261)
.|-...+||..+ |-|...|++|....+++-
T Consensus 155 ~g~s~~EIA~~l-gis~~tV~~~l~ra~~~L 184 (194)
T 1or7_A 155 DGLSYEEIAAIM-DCPVGTVRSRIFRAREAI 184 (194)
T ss_dssp TCCCHHHHHHHT-TSCHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 367799999999 999999999987766553
No 120
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=41.68 E-value=47 Score=23.74 Aligned_cols=46 Identities=17% Similarity=0.217 Sum_probs=34.9
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCChhHHhccCCCCCHHHHHHHHHHHHHH
Q 024849 66 KRGLLNEAEEQLVIDLHARLGNRWSKIAARLPGRTDNEIKNHWNTHIKK 114 (261)
Q Consensus 66 ~k~~WT~EED~~L~~lv~~~G~~W~~IA~~l~gRT~~q~k~Rw~~~lk~ 114 (261)
.....|+.|-+.|.-++ .|..-.+||..| |-+...|+.+...++++
T Consensus 26 ~~~~Lt~rE~~Vl~l~~--~G~s~~eIA~~L-~iS~~TV~~~~~~i~~K 71 (90)
T 3ulq_B 26 EQDVLTPRECLILQEVE--KGFTNQEIADAL-HLSKRSIEYSLTSIFNK 71 (90)
T ss_dssp ---CCCHHHHHHHHHHH--TTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHH--cCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 34468888877665544 688899999999 99999999988776655
No 121
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=41.42 E-value=22 Score=29.20 Aligned_cols=24 Identities=33% Similarity=0.598 Sum_probs=18.9
Q ss_pred CCCccCCCCHHHHHHHH--------HHHHHhC
Q 024849 10 LGVKKGPWTADEDKKLV--------TFILTHG 33 (261)
Q Consensus 10 p~ikkg~WT~eED~~L~--------~lv~~~g 33 (261)
|.-.+|-||+|+|+.|. +++++||
T Consensus 110 P~N~pGIWT~eDDe~L~s~d~~dikrL~kKHG 141 (168)
T 3cz6_A 110 PPNVPGIWTHDDDESLKSNDQEQIRKLVKKHG 141 (168)
T ss_dssp CTTCTTCCCHHHHHHHHSCCHHHHHHHHHHHC
T ss_pred CCCCCCCCChhhHHHHHcCCHHHHHHHHHHhC
Confidence 33468999999999884 5777887
No 122
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=41.14 E-value=37 Score=23.61 Aligned_cols=43 Identities=28% Similarity=0.255 Sum_probs=32.9
Q ss_pred CCCHHHHHHHHHHHHHhCCChhHHhccCCCCCHHHHHHHHHHHHHH
Q 024849 69 LLNEAEEQLVIDLHARLGNRWSKIAARLPGRTDNEIKNHWNTHIKK 114 (261)
Q Consensus 69 ~WT~EED~~L~~lv~~~G~~W~~IA~~l~gRT~~q~k~Rw~~~lk~ 114 (261)
..|+.|-+.|.- + ..|-.-.+||+.+ |-+...|+.+....+++
T Consensus 21 ~Lt~~e~~vl~l-~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 63 (82)
T 1je8_A 21 QLTPRERDILKL-I-AQGLPNKMIARRL-DITESTVKVHVKHMLKK 63 (82)
T ss_dssp GSCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 467777655544 4 5688899999999 89999999988766554
No 123
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=40.20 E-value=28 Score=27.17 Aligned_cols=30 Identities=17% Similarity=0.104 Sum_probs=25.0
Q ss_pred hCCChhHHhccCCCCCHHHHHHHHHHHHHHH
Q 024849 85 LGNRWSKIAARLPGRTDNEIKNHWNTHIKKK 115 (261)
Q Consensus 85 ~G~~W~~IA~~l~gRT~~q~k~Rw~~~lk~~ 115 (261)
.|-...+||..+ |-|...|++|....+++-
T Consensus 150 ~g~s~~eIA~~l-gis~~tV~~~l~ra~~~L 179 (184)
T 2q1z_A 150 GDLTHRELAAET-GLPLGTIKSRIRLALDRL 179 (184)
T ss_dssp SCCSSCCSTTTC-CCCCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 367799999999 899999999987766553
No 124
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=40.18 E-value=1.1e+02 Score=22.51 Aligned_cols=88 Identities=18% Similarity=0.147 Sum_probs=51.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCccccccccCccccccccc---ccccccc--CCCCcCCCCCHHHHHHHHHHHHHhC-CC
Q 024849 15 GPWTADEDKKLVTFILTHGHCCWRAVPKLAGLRRCGKSCR---LRWTNYL--RPDLKRGLLNEAEEQLVIDLHARLG-NR 88 (261)
Q Consensus 15 g~WT~eED~~L~~lv~~~g~~~W~~Ia~~~~~~Rt~~qCr---~Rw~~~L--~p~l~k~~WT~EED~~L~~lv~~~G-~~ 88 (261)
...|.++-..++.++. -|. .-.+||+.+| .+...++ .+|..+- .+.......|.+++..|+.+ ...+ -.
T Consensus 5 ~~~s~~~r~~i~~~~~-~G~-s~~~ia~~lg--is~~Tv~r~~~~~~~~g~~~~~gr~~~l~~~~~~~i~~~-~~~~~~s 79 (141)
T 1u78_A 5 SALSDTERAQLDVMKL-LNV-SLHEMSRKIS--RSRHCIRVYLKDPVSYGTSKRAPRRKALSVRDERNVIRA-ASNSCKT 79 (141)
T ss_dssp CCCCHHHHHHHHHHHH-TTC-CHHHHHHHHT--CCHHHHHHHHHSGGGTTCCCCCCCCCSSCHHHHHHHHHH-HHHCCCC
T ss_pred ccCCHHHHHHHHHHHH-cCC-CHHHHHHHHC--cCHHHHHHHHHcccccCCcCCCCCCCcCCHHHHHHHHHH-HhCCCCC
Confidence 4578888777777763 453 6789999887 4333332 2222211 11122335788888888877 3333 33
Q ss_pred hhHHhccCCC--CCHHHHHHHH
Q 024849 89 WSKIAARLPG--RTDNEIKNHW 108 (261)
Q Consensus 89 W~~IA~~l~g--RT~~q~k~Rw 108 (261)
=.+|+..+ | -+...|....
T Consensus 80 ~~~i~~~l-g~~~s~~tV~r~l 100 (141)
T 1u78_A 80 ARDIRNEL-QLSASKRTILNVI 100 (141)
T ss_dssp HHHHHHHT-TCCSCHHHHHHHH
T ss_pred HHHHHHHH-CCCccHHHHHHHH
Confidence 46888888 4 5666665433
No 125
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=39.15 E-value=44 Score=21.99 Aligned_cols=44 Identities=20% Similarity=0.246 Sum_probs=33.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCChhHHhccCCCCCHHHHHHHHHHHHHH
Q 024849 68 GLLNEAEEQLVIDLHARLGNRWSKIAARLPGRTDNEIKNHWNTHIKK 114 (261)
Q Consensus 68 ~~WT~EED~~L~~lv~~~G~~W~~IA~~l~gRT~~q~k~Rw~~~lk~ 114 (261)
...|+.|-+.|.- + ..|..-.+||..+ |-+...|+.+.....++
T Consensus 10 ~~L~~~e~~il~~-~-~~g~s~~eIA~~l-~is~~tV~~~~~~~~~k 53 (74)
T 1fse_A 10 PLLTKREREVFEL-L-VQDKTTKEIASEL-FISEKTVRNHISNAMQK 53 (74)
T ss_dssp CCCCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH-H-HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 3477777665554 4 5677899999999 88999999988765554
No 126
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=38.77 E-value=46 Score=24.84 Aligned_cols=39 Identities=10% Similarity=0.062 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhCCChhHHhccCCCCCHHHHHHHHHHHHHH
Q 024849 75 EQLVIDLHARLGNRWSKIAARLPGRTDNEIKNHWNTHIKK 114 (261)
Q Consensus 75 D~~L~~lv~~~G~~W~~IA~~l~gRT~~q~k~Rw~~~lk~ 114 (261)
+..++.++-..|-.-.+||..+ |-|...|+.|.+..+++
T Consensus 30 ~r~vl~l~~~~g~s~~EIA~~l-giS~~tV~~~l~ra~~k 68 (113)
T 1xsv_A 30 QRNYLELFYLEDYSLSEIADTF-NVSRQAVYDNIRRTGDL 68 (113)
T ss_dssp HHHHHHHHHTSCCCHHHHHHHT-TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 3455556556688899999999 89999999887765544
No 127
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=37.10 E-value=45 Score=24.87 Aligned_cols=35 Identities=23% Similarity=0.396 Sum_probs=28.4
Q ss_pred CHHHHHHHHHHHHHhCCChhHHhccCCCCCHHHHHH
Q 024849 71 NEAEEQLVIDLHARLGNRWSKIAARLPGRTDNEIKN 106 (261)
Q Consensus 71 T~EED~~L~~lv~~~G~~W~~IA~~l~gRT~~q~k~ 106 (261)
+..-+..|..+....|..|..+|..| |=+..+|..
T Consensus 14 ~~~~~~~~~~ia~~lg~~Wk~LAr~L-g~s~~~I~~ 48 (111)
T 2yqf_A 14 TEQAEMKMAVISEHLGLSWAELAREL-QFSVEDINR 48 (111)
T ss_dssp SHHHHHHHHHHHHHHTTTHHHHHHHT-TCCHHHHHH
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 66677788888899999999999999 777765543
No 128
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=36.82 E-value=55 Score=20.76 Aligned_cols=37 Identities=19% Similarity=0.240 Sum_probs=28.5
Q ss_pred HHHHHHHHHhCCChhHHhccCCCCCHHHHHHHHHHHHHH
Q 024849 76 QLVIDLHARLGNRWSKIAARLPGRTDNEIKNHWNTHIKK 114 (261)
Q Consensus 76 ~~L~~lv~~~G~~W~~IA~~l~gRT~~q~k~Rw~~~lk~ 114 (261)
..++.++ ..|-.-.+||..+ |-+...|+.+....+++
T Consensus 4 ~~vl~l~-~~g~s~~eIA~~l-~is~~tV~~~~~~~~~k 40 (61)
T 2jpc_A 4 RQVLKLI-DEGYTNHGISEKL-HISIKTVETHRMNMMRK 40 (61)
T ss_dssp HHHHHHH-HTSCCSHHHHHHT-CSCHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HcCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 4455553 5577789999999 89999999988766654
No 129
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=34.23 E-value=42 Score=25.23 Aligned_cols=29 Identities=28% Similarity=0.296 Sum_probs=24.0
Q ss_pred hCCChhHHhccCCCCCHHHHHHHHHHHHHH
Q 024849 85 LGNRWSKIAARLPGRTDNEIKNHWNTHIKK 114 (261)
Q Consensus 85 ~G~~W~~IA~~l~gRT~~q~k~Rw~~~lk~ 114 (261)
.|-...+||+.+ |-|...|+++.+..+++
T Consensus 123 ~g~s~~EIA~~l-gis~~tV~~~~~ra~~~ 151 (164)
T 3mzy_A 123 RGYSYREIATIL-SKNLKSIDNTIQRIRKK 151 (164)
T ss_dssp TTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 467799999999 89999999988766544
No 130
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=33.53 E-value=44 Score=23.50 Aligned_cols=43 Identities=26% Similarity=0.302 Sum_probs=32.6
Q ss_pred CCCHHHHHHHHHHHHHhCCChhHHhccCCCCCHHHHHHHHHHHHHH
Q 024849 69 LLNEAEEQLVIDLHARLGNRWSKIAARLPGRTDNEIKNHWNTHIKK 114 (261)
Q Consensus 69 ~WT~EED~~L~~lv~~~G~~W~~IA~~l~gRT~~q~k~Rw~~~lk~ 114 (261)
..|+.|-+.|. ++ ..|-.-.+||..| |-+...|+.+....+++
T Consensus 29 ~Lt~~e~~vl~-l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 71 (91)
T 2rnj_A 29 MLTEREMEILL-LI-AKGYSNQEIASAS-HITIKTVKTHVSNILSK 71 (91)
T ss_dssp GCCSHHHHHHH-HH-HTTCCTTHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHH-HH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 36666665554 44 5688889999999 99999999988766554
No 131
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=33.15 E-value=35 Score=27.99 Aligned_cols=17 Identities=12% Similarity=0.302 Sum_probs=14.7
Q ss_pred CCCcCCCCCHHHHHHHH
Q 024849 63 PDLKRGLLNEAEEQLVI 79 (261)
Q Consensus 63 p~l~k~~WT~EED~~L~ 79 (261)
|....|-||.++|+.|.
T Consensus 110 P~N~pGIWT~eDDe~L~ 126 (168)
T 3cz6_A 110 PPNVPGIWTHDDDESLK 126 (168)
T ss_dssp CTTCTTCCCHHHHHHHH
T ss_pred CCCCCCCCChhhHHHHH
Confidence 56778999999999886
No 132
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=32.85 E-value=54 Score=26.38 Aligned_cols=30 Identities=7% Similarity=-0.017 Sum_probs=24.5
Q ss_pred HhCCChhHHhccCCCCCHHHHHHHHHHHHHH
Q 024849 84 RLGNRWSKIAARLPGRTDNEIKNHWNTHIKK 114 (261)
Q Consensus 84 ~~G~~W~~IA~~l~gRT~~q~k~Rw~~~lk~ 114 (261)
..|-...+||+.+ |-|...|+.+.+..+++
T Consensus 201 ~~g~s~~EIA~~l-gis~~~V~~~~~ra~~~ 230 (239)
T 1rp3_A 201 YEELPAKEVAKIL-ETSVSRVSQLKAKALER 230 (239)
T ss_dssp TSCCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 3467899999999 99999999988766554
No 133
>2of5_H Leucine-rich repeat and death domain-containing protein; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=32.38 E-value=40 Score=25.57 Aligned_cols=31 Identities=26% Similarity=0.567 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhCCChhHHhccCCCCCHHHHHH
Q 024849 75 EQLVIDLHARLGNRWSKIAARLPGRTDNEIKN 106 (261)
Q Consensus 75 D~~L~~lv~~~G~~W~~IA~~l~gRT~~q~k~ 106 (261)
+..|..+....|..|..+|..| |=+..+|..
T Consensus 13 ~~~l~~ia~~lg~dWk~LAr~L-g~s~~~I~~ 43 (118)
T 2of5_H 13 QSNLLSVAGRLGLDWPAVALHL-GVSYREVQR 43 (118)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHT-TCCHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHc-CCCHHHHHH
Confidence 3567777889999999999999 666665533
No 134
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=32.13 E-value=71 Score=22.70 Aligned_cols=36 Identities=17% Similarity=0.128 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHhCCChhHHhccCCCCCHHHHHHHH
Q 024849 72 EAEEQLVIDLHARLGNRWSKIAARLPGRTDNEIKNHW 108 (261)
Q Consensus 72 ~EED~~L~~lv~~~G~~W~~IA~~l~gRT~~q~k~Rw 108 (261)
.-|...|.+++.++|++-++.|+.| |=+...+..|-
T Consensus 50 ~~E~~~i~~aL~~~~gn~~~aA~~L-GIsr~tL~rkl 85 (91)
T 1ntc_A 50 ELERTLLTTALRHTQGHKQEAARLL-GWGAATLTAKL 85 (91)
T ss_dssp HHHHHHHHHHHHHTTTCTTHHHHHT-TCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHHHHH
Confidence 3477788899999999999999999 77776665553
No 135
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=31.95 E-value=43 Score=26.77 Aligned_cols=45 Identities=16% Similarity=0.215 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHhC-CChhHHhccCCCCCHHHHHHHHHHHHHHHHhh
Q 024849 73 AEEQLVIDLHARLG-NRWSKIAARLPGRTDNEIKNHWNTHIKKKLIK 118 (261)
Q Consensus 73 EED~~L~~lv~~~G-~~W~~IA~~l~gRT~~q~k~Rw~~~lk~~~~k 118 (261)
+-|.+|+.+.++.| ..+.+||+.+ |-+...|+.|.+.+.+..+.+
T Consensus 27 ~~d~~IL~~L~~~~~~s~~eLA~~l-glS~~tv~~rl~~L~~~G~I~ 72 (171)
T 2e1c_A 27 EIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESGVIK 72 (171)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHH-TSCHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCeE
Confidence 45667777777766 4699999999 889999999998887776554
No 136
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=31.55 E-value=70 Score=24.42 Aligned_cols=45 Identities=13% Similarity=0.189 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHhC-CChhHHhccCCCCCHHHHHHHHHHHHHHHHhh
Q 024849 73 AEEQLVIDLHARLG-NRWSKIAARLPGRTDNEIKNHWNTHIKKKLIK 118 (261)
Q Consensus 73 EED~~L~~lv~~~G-~~W~~IA~~l~gRT~~q~k~Rw~~~lk~~~~k 118 (261)
+-|..|+.+.+..| -.+.+||+.+ |=+...|+.|.+.+.+..+..
T Consensus 9 ~~d~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~i~ 54 (151)
T 2dbb_A 9 RVDMQLVKILSENSRLTYRELADIL-NTTRQRIARRIDKLKKLGIIR 54 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHT-TSCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCEE
Confidence 34566777777766 4699999999 889999999998888776554
No 137
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=31.41 E-value=60 Score=21.38 Aligned_cols=33 Identities=9% Similarity=0.103 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHhCCChhHHhccCCCCCHHHHHH
Q 024849 73 AEEQLVIDLHARLGNRWSKIAARLPGRTDNEIKN 106 (261)
Q Consensus 73 EED~~L~~lv~~~G~~W~~IA~~l~gRT~~q~k~ 106 (261)
-|...|.++...+|++.++.|+.+ |=+...+..
T Consensus 19 ~E~~~i~~aL~~~~gn~~~aA~~L-Gisr~tL~r 51 (63)
T 3e7l_A 19 FEKIFIEEKLREYDYDLKRTAEEI-GIDLSNLYR 51 (63)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHH-TCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHHH
Confidence 477788899999999999999998 555544443
No 138
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=30.64 E-value=47 Score=25.21 Aligned_cols=41 Identities=20% Similarity=0.416 Sum_probs=26.7
Q ss_pred cCCCCcCCCCCHHHHHHHHHHHHHhCCChhHHhccCCCCCHHHHH
Q 024849 61 LRPDLKRGLLNEAEEQLVIDLHARLGNRWSKIAARLPGRTDNEIK 105 (261)
Q Consensus 61 L~p~l~k~~WT~EED~~L~~lv~~~G~~W~~IA~~l~gRT~~q~k 105 (261)
+.+.+....=|.+ .|..++...|..|..+|+.| |=+..+|.
T Consensus 13 ~~~~~~~~~~t~~---~l~~Ia~~lG~~Wk~LAR~L-Glse~dId 53 (114)
T 2of5_A 13 IPSHILNSSPSDR---QINQLAQRLGPEWEPMVLSL-GLSQTDIY 53 (114)
T ss_dssp ---CCTTSCCCHH---HHHHHHHTCCSTHHHHHHTT-TCCHHHHH
T ss_pred CCchhhcCCCCHH---HHHHHHHHHhhhHHHHHHHc-CCCHHHHH
Confidence 3444444555555 45566788999999999998 66665543
No 139
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=30.40 E-value=50 Score=25.12 Aligned_cols=39 Identities=21% Similarity=0.431 Sum_probs=25.9
Q ss_pred CCCCcCCCCCHHHHHHHHHHHHHhCCChhHHhccCCCCCHHHH
Q 024849 62 RPDLKRGLLNEAEEQLVIDLHARLGNRWSKIAARLPGRTDNEI 104 (261)
Q Consensus 62 ~p~l~k~~WT~EED~~L~~lv~~~G~~W~~IA~~l~gRT~~q~ 104 (261)
.+.+....=|.+ .|..++...|..|..+|+.| |=+..+|
T Consensus 14 ~~~~~~~~~t~~---~l~~Ia~~LG~~Wk~LAR~L-Glse~dI 52 (115)
T 2o71_A 14 PSHILNSSPSDR---QINQLAQRLGPEWEPMVLSL-GLSQTDI 52 (115)
T ss_dssp --CGGGSCCCHH---HHHHHHHHCCTTHHHHHHHT-TCCHHHH
T ss_pred CchhccCCCCHH---HHHHHHHHHhhhHHHHHHHc-CCCHHHH
Confidence 334444455555 45566788999999999998 6555554
No 140
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=29.32 E-value=14 Score=29.38 Aligned_cols=56 Identities=32% Similarity=0.439 Sum_probs=34.7
Q ss_pred HHHHHHHHhCC-------CCccccccccCcccc----ccccccccccccCC--CCcCCCCCHHHHHHHH
Q 024849 24 KLVTFILTHGH-------CCWRAVPKLAGLRRC----GKSCRLRWTNYLRP--DLKRGLLNEAEEQLVI 79 (261)
Q Consensus 24 ~L~~lv~~~g~-------~~W~~Ia~~~~~~Rt----~~qCr~Rw~~~L~p--~l~k~~WT~EED~~L~ 79 (261)
+|..+|.+.|. ..|.+||..++...+ +.+.+..|.++|-| ...++.=+++|-+.-+
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~yE~~~~g~~~p~~~~~~~ 136 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECEKRGLSNPNELQAAI 136 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 46666666653 259999998874332 35678888888876 3334554455444333
No 141
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=29.12 E-value=97 Score=22.53 Aligned_cols=45 Identities=20% Similarity=0.206 Sum_probs=35.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCCChhHHhccCCCCCHHHHHHHHHHHHHH
Q 024849 67 RGLLNEAEEQLVIDLHARLGNRWSKIAARLPGRTDNEIKNHWNTHIKK 114 (261)
Q Consensus 67 k~~WT~EED~~L~~lv~~~G~~W~~IA~~l~gRT~~q~k~Rw~~~lk~ 114 (261)
....|+.|-+.|.-++ .|-.-.+||..| |-+...|+.+...++++
T Consensus 32 ~~~Lt~re~~Vl~l~~--~G~s~~EIA~~L-~iS~~TV~~~l~ri~~K 76 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFA--EGFLVTEIAKKL-NRSIKTISSQKKSAMMK 76 (99)
T ss_dssp SSSCCHHHHHHHHHHH--HTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHH--cCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 3568888877665433 688889999999 88999999988766655
No 142
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=28.12 E-value=63 Score=24.80 Aligned_cols=44 Identities=16% Similarity=0.220 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHhC-CChhHHhccCCCCCHHHHHHHHHHHHHHHHhh
Q 024849 74 EEQLVIDLHARLG-NRWSKIAARLPGRTDNEIKNHWNTHIKKKLIK 118 (261)
Q Consensus 74 ED~~L~~lv~~~G-~~W~~IA~~l~gRT~~q~k~Rw~~~lk~~~~k 118 (261)
-|..|+.+..+.| -.+.+||+.+ |-+...|+.|.+.+.+..+.+
T Consensus 8 ~~~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~i~ 52 (151)
T 2cyy_A 8 IDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESGVIK 52 (151)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHH-CSCHHHHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCeE
Confidence 4566777777766 4699999999 889999999998888776654
No 143
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=27.22 E-value=79 Score=23.57 Aligned_cols=43 Identities=16% Similarity=0.169 Sum_probs=32.2
Q ss_pred CCHHHHHHHHHHHHHhCCChhHHhccCCCCCHHHHHHHHHHHHHH
Q 024849 70 LNEAEEQLVIDLHARLGNRWSKIAARLPGRTDNEIKNHWNTHIKK 114 (261)
Q Consensus 70 WT~EED~~L~~lv~~~G~~W~~IA~~l~gRT~~q~k~Rw~~~lk~ 114 (261)
+++.+ ..++.++-..|-.-.+||..+ |-|...|+.+.+..+++
T Consensus 23 L~~~~-r~vl~l~y~~g~s~~EIA~~l-giS~~tV~~~l~ra~~k 65 (113)
T 1s7o_A 23 LTDKQ-MNYIELYYADDYSLAEIADEF-GVSRQAVYDNIKRTEKI 65 (113)
T ss_dssp SCHHH-HHHHHHHHHTCCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred CCHHH-HHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 45544 445556556788899999999 99999999988766544
No 144
>1wxp_A THO complex subunit 1; death domain, structural genomics, nuclear matrix, riken structural genomics/proteomics initiative, RSGI, transport protein; NMR {Homo sapiens}
Probab=26.31 E-value=77 Score=23.52 Aligned_cols=30 Identities=27% Similarity=0.537 Sum_probs=22.5
Q ss_pred HHHHHHHHHhCCChhHHhccCCCCCHHHHHH
Q 024849 76 QLVIDLHARLGNRWSKIAARLPGRTDNEIKN 106 (261)
Q Consensus 76 ~~L~~lv~~~G~~W~~IA~~l~gRT~~q~k~ 106 (261)
..|-.+....|..|..+|+.| |=+..+|..
T Consensus 19 ~~~~~ia~~lg~~Wk~LAr~L-g~~~~~I~~ 48 (110)
T 1wxp_A 19 EQIEVFANKLGEQWKILAPYL-EMKDSEIRQ 48 (110)
T ss_dssp HHHHHHHHHHTTTHHHHTTTT-TCCHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHh-CCCHHHHHH
Confidence 445566677899999999999 766666543
No 145
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=25.85 E-value=25 Score=28.03 Aligned_cols=36 Identities=14% Similarity=0.208 Sum_probs=27.3
Q ss_pred cccccccCccccccccccccccccCCCCcCCCCCHHHHHHHHHH
Q 024849 38 RAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLNEAEEQLVIDL 81 (261)
Q Consensus 38 ~~Ia~~~~~~Rt~~qCr~Rw~~~L~p~l~k~~WT~EED~~L~~l 81 (261)
..||.++. |+|+.+||..+. + ...+|+||++.+.+-
T Consensus 119 ~~vA~~ik-gkt~eeir~~f~------I-~nd~t~eEe~~ir~e 154 (160)
T 2p1m_A 119 QTVADMIK-GKTPEEIRTTFN------I-KNDFTPEEEEEVRRE 154 (160)
T ss_dssp HHHHHTTT-TCCHHHHHHHTT------C-CCCCCHHHHHHHHHH
T ss_pred HHHHHHHc-CCCHHHHHHHcC------C-CCCCCHHHHHHHHHh
Confidence 57777887 899999998763 2 235999999887643
No 146
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=23.89 E-value=1.1e+02 Score=17.59 Aligned_cols=38 Identities=13% Similarity=0.198 Sum_probs=27.7
Q ss_pred CCCHHHHHHHHHHHHHhCCChhHHhccCCCCCHHHHHHHH
Q 024849 69 LLNEAEEQLVIDLHARLGNRWSKIAARLPGRTDNEIKNHW 108 (261)
Q Consensus 69 ~WT~EED~~L~~lv~~~G~~W~~IA~~l~gRT~~q~k~Rw 108 (261)
..+.++-..++.++ .-|..-.+||+.+ |-+...|+...
T Consensus 5 ~l~~~~~~~i~~~~-~~g~s~~~IA~~l-gis~~Tv~~~~ 42 (51)
T 1tc3_C 5 ALSDTERAQLDVMK-LLNVSLHEMSRKI-SRSRHCIRVYL 42 (51)
T ss_dssp CCCHHHHHHHHHHH-HTTCCHHHHHHHH-TCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHH-HcCCCHHHHHHHH-CcCHHHHHHHH
Confidence 45666666666665 3477799999999 88888877644
No 147
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=22.80 E-value=2.5e+02 Score=21.29 Aligned_cols=78 Identities=12% Similarity=0.035 Sum_probs=46.2
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCccccccccCccccccccccccccc------cCCCCc----CCCCCHHHHHHHHHHHH
Q 024849 14 KGPWTADEDKKLVTFILTHGHCCWRAVPKLAGLRRCGKSCRLRWTNY------LRPDLK----RGLLNEAEEQLVIDLHA 83 (261)
Q Consensus 14 kg~WT~eED~~L~~lv~~~g~~~W~~Ia~~~~~~Rt~~qCr~Rw~~~------L~p~l~----k~~WT~EED~~L~~lv~ 83 (261)
..+.|.++-..++.++. .|. .-.+||+.++ .+... ..||.+. +.+... +...+.+....|++++.
T Consensus 23 ~~~~s~e~r~~ii~l~~-~G~-s~~~IA~~lg--is~~T-V~rwl~r~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~ 97 (159)
T 2k27_A 23 GRPLPEVVRQRIVDLAH-QGV-RPCDISRQLR--VSHGC-VSKILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKR 97 (159)
T ss_dssp SCSSCHHHHHHHHHHHH-HTC-CHHHHHHHHT--CCSHH-HHHHHCCSSTTSCCCCCCCCCCCCCCCCTTHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH-cCC-CHHHHHHHHC--cCHHH-HHHHHHHHHhcCCccCCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 34789998888888874 453 6789999887 33222 2233322 222211 33478888888888877
Q ss_pred HhC-CChhHHhccC
Q 024849 84 RLG-NRWSKIAARL 96 (261)
Q Consensus 84 ~~G-~~W~~IA~~l 96 (261)
+.+ -.-.+|+..+
T Consensus 98 ~~~~~s~~~i~~~l 111 (159)
T 2k27_A 98 QNPTMFAWEIRDRL 111 (159)
T ss_dssp HCSSSCHHHHHHHH
T ss_pred HCccchHHHHHHHH
Confidence 643 2234555544
No 148
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=22.48 E-value=1.4e+02 Score=22.24 Aligned_cols=43 Identities=14% Similarity=0.434 Sum_probs=34.4
Q ss_pred HHHHHHHHHHhC-CChhHHhccCCCCCHHHHHHHHHHHHHHHHhh
Q 024849 75 EQLVIDLHARLG-NRWSKIAARLPGRTDNEIKNHWNTHIKKKLIK 118 (261)
Q Consensus 75 D~~L~~lv~~~G-~~W~~IA~~l~gRT~~q~k~Rw~~~lk~~~~k 118 (261)
|..|+.+....| -.+.+||+.+ |-+...|+.|.+.+.+..+..
T Consensus 6 ~~~il~~L~~~~~~~~~ela~~l-g~s~~tv~~~l~~L~~~G~i~ 49 (141)
T 1i1g_A 6 DKIILEILEKDARTPFTEIAKKL-GISETAVRKRVKALEEKGIIE 49 (141)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHH-TSCHHHHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCEe
Confidence 556666666655 4699999999 899999999998888776654
No 149
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=20.41 E-value=1e+02 Score=21.37 Aligned_cols=46 Identities=22% Similarity=0.348 Sum_probs=35.4
Q ss_pred CHHHHHHHHHHHHHhC---C-ChhHHhccCCCCCHHHHHHHHHHHHHHHHh
Q 024849 71 NEAEEQLVIDLHARLG---N-RWSKIAARLPGRTDNEIKNHWNTHIKKKLI 117 (261)
Q Consensus 71 T~EED~~L~~lv~~~G---~-~W~~IA~~l~gRT~~q~k~Rw~~~lk~~~~ 117 (261)
|.+-|..|+.+....| . .=.+||+.+ |-+...|..+-+.+.+..+.
T Consensus 12 ~~~~~~~IL~~L~~~~~~~~~t~~eLA~~L-gvs~~tV~~~L~~L~~~G~I 61 (77)
T 1qgp_A 12 YQDQEQRILKFLEELGEGKATTAHDLSGKL-GTPKKEINRVLYSLAKKGKL 61 (77)
T ss_dssp HHHHHHHHHHHHHHHCSSSCEEHHHHHHHH-CCCHHHHHHHHHHHHHHTSE
T ss_pred CHHHHHHHHHHHHHcCCCCCcCHHHHHHHH-CcCHHHHHHHHHHHHHCCCE
Confidence 5566788888888888 2 468999999 78888888887776665443
No 150
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=20.27 E-value=1e+02 Score=25.90 Aligned_cols=43 Identities=28% Similarity=0.359 Sum_probs=32.7
Q ss_pred CCCHHHHHHHHHHHHHhCCChhHHhccCCCCCHHHHHHHHHHHHHH
Q 024849 69 LLNEAEEQLVIDLHARLGNRWSKIAARLPGRTDNEIKNHWNTHIKK 114 (261)
Q Consensus 69 ~WT~EED~~L~~lv~~~G~~W~~IA~~l~gRT~~q~k~Rw~~~lk~ 114 (261)
..++.|-+. +.++ ..|-.-.+||..| |.+...|+.|-+..+++
T Consensus 197 ~L~~~erev-l~L~-~~G~s~~EIA~~L-~iS~~TVk~~l~ra~~k 239 (258)
T 3clo_A 197 ILSEREKEI-LRCI-RKGLSSKEIAATL-YISVNTVNRHRQNILEK 239 (258)
T ss_dssp SSCHHHHHH-HHHH-HTTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHH-HHHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 466655544 4455 4788899999999 99999999998776654
Done!