Query 024852
Match_columns 261
No_of_seqs 165 out of 1414
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 07:54:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024852.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024852hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03145 Protein phosphatase 2 100.0 8.1E-40 1.7E-44 296.5 23.3 220 2-232 111-332 (365)
2 KOG0697 Protein phosphatase 1B 100.0 2E-39 4.3E-44 274.1 18.0 227 5-235 64-296 (379)
3 KOG0698 Serine/threonine prote 100.0 9.6E-38 2.1E-42 280.8 22.9 219 3-235 84-309 (330)
4 PTZ00224 protein phosphatase 2 100.0 2.9E-37 6.3E-42 280.8 23.3 215 3-232 57-273 (381)
5 PF00481 PP2C: Protein phospha 100.0 4.4E-38 9.5E-43 273.7 9.5 210 3-222 42-254 (254)
6 COG0631 PTC1 Serine/threonine 100.0 5.5E-36 1.2E-40 261.4 15.8 176 31-233 80-255 (262)
7 KOG0699 Serine/threonine prote 100.0 2.3E-35 5E-40 257.4 15.6 176 57-232 327-505 (542)
8 KOG0700 Protein phosphatase 2C 100.0 7.1E-33 1.5E-37 246.3 14.4 165 49-213 190-378 (390)
9 smart00332 PP2Cc Serine/threon 100.0 6E-30 1.3E-34 221.2 22.0 208 4-227 44-255 (255)
10 cd00143 PP2Cc Serine/threonine 100.0 6E-30 1.3E-34 220.6 21.4 160 55-229 94-254 (254)
11 PRK14559 putative protein seri 100.0 1E-29 2.2E-34 243.5 19.3 200 9-234 433-639 (645)
12 KOG1323 Serine/threonine phosp 99.9 2.9E-22 6.2E-27 174.0 15.1 199 32-232 217-489 (493)
13 KOG1379 Serine/threonine prote 99.8 2.3E-19 5E-24 155.5 17.8 137 58-229 165-330 (330)
14 KOG0618 Serine/threonine phosp 99.7 3E-17 6.4E-22 158.9 12.3 173 39-231 591-773 (1081)
15 smart00331 PP2C_SIG Sigma fact 99.5 2.4E-13 5.2E-18 113.0 15.6 150 4-210 40-192 (193)
16 PF13672 PP2C_2: Protein phosp 99.5 3.3E-14 7.2E-19 119.9 5.8 150 8-193 42-196 (212)
17 TIGR02865 spore_II_E stage II 99.4 1.5E-11 3.3E-16 121.8 16.8 123 59-229 634-763 (764)
18 PF07228 SpoIIE: Stage II spor 99.4 3.9E-11 8.5E-16 99.4 16.3 169 4-230 14-193 (193)
19 COG2208 RsbU Serine phosphatas 98.3 3.2E-05 6.9E-10 70.9 16.6 124 60-230 231-366 (367)
20 COG3700 AphA Acid phosphatase 72.6 13 0.00027 30.8 5.9 46 165-211 72-128 (237)
21 PF09436 DUF2016: Domain of un 49.3 11 0.00023 26.3 1.4 22 160-182 22-44 (72)
22 PRK06369 nac nascent polypepti 44.6 1.4E+02 0.003 22.7 7.2 56 149-207 38-100 (115)
23 PF01436 NHL: NHL repeat; Int 36.2 69 0.0015 17.4 3.2 22 66-87 7-28 (28)
24 COG2168 DsrH Uncharacterized c 35.2 27 0.00058 25.7 1.7 31 159-190 20-50 (96)
25 PF05785 CNF1: Rho-activating 34.3 54 0.0012 29.0 3.7 25 57-82 129-153 (281)
26 PF06972 DUF1296: Protein of u 29.6 99 0.0021 20.6 3.5 27 179-208 19-45 (60)
27 PRK03072 heat shock protein Ht 24.3 1.2E+02 0.0026 26.8 4.3 26 167-192 110-135 (288)
28 PRK05457 heat shock protein Ht 23.8 1.7E+02 0.0037 25.8 5.2 38 154-192 105-142 (284)
29 COG3315 O-Methyltransferase in 23.4 1.7E+02 0.0037 26.0 5.1 89 81-190 104-194 (297)
30 COG4669 EscJ Type III secretor 23.0 1.1E+02 0.0023 26.5 3.5 36 202-241 167-202 (246)
31 COG1539 FolB Dihydroneopterin 22.5 3.6E+02 0.0077 20.6 6.8 59 170-234 43-103 (121)
32 PRK03982 heat shock protein Ht 22.3 1.1E+02 0.0024 27.0 3.7 34 158-192 100-133 (288)
33 cd00534 DHNA_DHNTPE Dihydroneo 22.2 2.7E+02 0.0058 20.7 5.4 57 170-232 42-100 (118)
34 PF07335 Glyco_hydro_75: Funga 21.2 1.2E+02 0.0026 24.4 3.3 22 59-82 64-85 (156)
35 PRK02391 heat shock protein Ht 20.9 1E+02 0.0023 27.4 3.2 30 162-192 112-141 (296)
36 TIGR02276 beta_rpt_yvtn 40-res 20.6 1.4E+02 0.003 17.1 2.8 19 71-89 3-21 (42)
No 1
>PLN03145 Protein phosphatase 2c; Provisional
Probab=100.00 E-value=8.1e-40 Score=296.48 Aligned_cols=220 Identities=33% Similarity=0.521 Sum_probs=175.3
Q ss_pred CCcccchHHHHHHhhcchhhhcCCCCCccHHHHHHHHHHhHHHHhhhcCCC--CCCCCCCCCceEEEEEEECCeEEEEEe
Q 024852 2 QYKQHGFLRYLINRLLIPFRKVKQKPTDSLDKWAYHYMSDFFFVAFLEGPH--SDFHGPTSGSTACVAIIRDKQLVVANA 79 (261)
Q Consensus 2 ~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~GtT~~v~~i~~~~l~vanv 79 (261)
+++|+..+.++.+.|...+.+-... ...+.+|+ .++|..++....+ .......+|||++++++.++++|||||
T Consensus 111 GhGG~~age~as~~l~~~i~~~~~~-~~~~~~al----~~af~~~d~~~~~~~~~~~~~~~GTTavv~li~~~~l~vaNv 185 (365)
T PLN03145 111 GHGGKHAADFACYHLPRFIVEDEDF-PREIEKVV----SSAFLQTDTAFAEACSLDASLASGTTALAALVVGRSLVVANA 185 (365)
T ss_pred CCCCHHHHHHHHHHHHHHHHhhhcc-chhHHHHH----HHHHHHHhHHHHhhhccccCCCCcCcEEEEEEECCeEEEEec
Confidence 3567778888888877554431111 11233443 4444444333211 111234599999999999999999999
Q ss_pred ccccEEEEeCCcccccCCCCCCCcHHHHHHHHHhCCeEEeccccCceeccccccchhhhhcCCCCccCCeeeeCCceEEE
Q 024852 80 GDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTI 159 (261)
Q Consensus 80 GDSr~~l~r~~~~~~lt~dH~~~~~~e~~ri~~~~~~~~~~r~~~~~~ltrslGd~~~k~~~~~~~~~~~v~~~p~i~~~ 159 (261)
||||+|+++++++++||+||++.++.|++||...||.+...++++.+.+||+|||..+|.... .....++++|++..+
T Consensus 186 GDSRayl~r~g~~~~LT~DH~~~~~~E~~RI~~~Gg~v~~g~v~g~l~vTRalGD~~~k~~k~--~~~~~vs~ePdv~~~ 263 (365)
T PLN03145 186 GDCRAVLCRRGKAIEMSRDHKPMCSKERKRIEASGGYVYDGYLNGQLNVARALGDWHMEGMKG--SDGGPLSAEPELMTT 263 (365)
T ss_pred CCceEEEEcCCeEEEecCCCCCCCHHHHHHHHHcCCceecceECCcccccccccccccccccc--ccCCCcceEEEEEEE
Confidence 999999999999999999999999999999999999999889999999999999988764321 112346889999999
Q ss_pred EecCCCeEEEEEcCCccCCCCHHHHHHHHHhhhcCCCCHHHHHHHHHHHhhcCCCCCCCCCCeeEEEEEcCCC
Q 024852 160 ELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETKLSVICEKVFDRCLAPSAGGEGCDNMTMILVQFKNA 232 (261)
Q Consensus 160 ~l~~~d~~lvL~SDGl~d~l~~~ei~~iv~~~~~~~~~~~~~a~~l~~~a~~~~~~~g~~DNiTvivv~~~~~ 232 (261)
++.++|.|||||||||||+|+++++.+++.+.+....+++++|+.|++.|+. +++.||+|||||+|+..
T Consensus 264 ~l~~~D~fLILaSDGLwdvls~ee~v~~i~~~l~~~~~p~~aa~~Lv~~Al~----rgs~DNITvIVV~l~~~ 332 (365)
T PLN03145 264 QLTEEDEFLIIGCDGIWDVFRSQNAVDFARRRLQEHNDPVMCSKELVDEALK----RKSGDNLAVVVVCFQSQ 332 (365)
T ss_pred ECCCCCEEEEEeCCccccCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh----CCCCCCEEEEEEEeecC
Confidence 9999999999999999999999999988877665566899999999999999 88999999999999973
No 2
>KOG0697 consensus Protein phosphatase 1B (formerly 2C) [Signal transduction mechanisms]
Probab=100.00 E-value=2e-39 Score=274.13 Aligned_cols=227 Identities=33% Similarity=0.532 Sum_probs=192.9
Q ss_pred ccchHHHHHHhhcchh---hhcCCCCCccHHHHHHHHHHhHHHHhhhcC---CCCCCCCCCCCceEEEEEEECCeEEEEE
Q 024852 5 QHGFLRYLINRLLIPF---RKVKQKPTDSLDKWAYHYMSDFFFVAFLEG---PHSDFHGPTSGSTACVAIIRDKQLVVAN 78 (261)
Q Consensus 5 ~~~~a~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~GtT~~v~~i~~~~l~van 78 (261)
|...|.+++++|+.-+ .+++.....-..+-.++-++..|...++.+ .+......++||||+++++...++|++|
T Consensus 64 Gs~va~~c~~hLlehi~sse~F~~~~k~gsv~~~~~GIrtGFL~iDE~mr~~~~~~~~~drsGsTAVcv~vsp~h~y~~N 143 (379)
T KOG0697|consen 64 GSQVANHCAEHLLEHIISSEEFRGMTKNGSVENVEKGIRTGFLSIDEIMRTLSDISKGSDRSGSTAVCVFVSPTHIYIIN 143 (379)
T ss_pred chHHHHHHHHHHHHHhhhhHHHhhhccCCcHHHHHhhHhhcceeHHHHHhhhhhhhcccccCCceEEEEEecCceEEEEe
Confidence 5567888888888322 233332111122234555666665555432 2223333459999999999999999999
Q ss_pred eccccEEEEeCCcccccCCCCCCCcHHHHHHHHHhCCeEEeccccCceeccccccchhhhhcCCCCccCCeeeeCCceEE
Q 024852 79 AGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDIST 158 (261)
Q Consensus 79 vGDSr~~l~r~~~~~~lt~dH~~~~~~e~~ri~~~~~~~~~~r~~~~~~ltrslGd~~~k~~~~~~~~~~~v~~~p~i~~ 158 (261)
+||||++++|+|+++.-|.||+|..+.|++||.++||.+...|+||.++++|+|||+.||.-..-++..+.|+++|++..
T Consensus 144 cGDSRavl~rng~~~f~TqDHKP~~p~EkeRIqnAGGSVMIqRvNGsLAVSRAlGDydyK~v~~kgp~eQlVSPEPev~~ 223 (379)
T KOG0697|consen 144 CGDSRAVLCRNGEVVFSTQDHKPYLPKEKERIQNAGGSVMIQRVNGSLAVSRALGDYDYKNVPGKGPTEQLVSPEPEVYI 223 (379)
T ss_pred cCcchhheecCCceEEeccCCCCCChHHHHHHhcCCCeEEEEEecceeeeehhccCcccccCCCCCchhcccCCCCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCeEEEEEcCCccCCCCHHHHHHHHHhhhcCCCCHHHHHHHHHHHhhcCCCCCCCCCCeeEEEEEcCCCCCC
Q 024852 159 IELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETKLSVICEKVFDRCLAPSAGGEGCDNMTMILVQFKNASNN 235 (261)
Q Consensus 159 ~~l~~~d~~lvL~SDGl~d~l~~~ei~~iv~~~~~~~~~~~~~a~~l~~~a~~~~~~~g~~DNiTvivv~~~~~~~~ 235 (261)
+..+..|.||||++||+||+|+++|+.+.|...+....++.++|+.+++.|+- +|++||+|+|+|.|..++..
T Consensus 224 ~~R~eedeFivlACDGIwDVMtneelcefv~sRl~Vt~dL~~vcn~VvDtCLh----KGSRDNMsivlvcfp~APkv 296 (379)
T KOG0697|consen 224 IERSEEDEFIVLACDGIWDVMTNEELCEFVKSRLEVTSDLEEVCNDVVDTCLH----KGSRDNMSIVLVCFPGAPKV 296 (379)
T ss_pred eeccccCcEEEEEccchhhhcccHHHHHHHHhhheecccHHHHHHHHHHHHHh----ccCccCceEEEEecCCCCCC
Confidence 99999888999999999999999999999999888899999999999999999 89999999999999875444
No 3
>KOG0698 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=9.6e-38 Score=280.85 Aligned_cols=219 Identities=39% Similarity=0.533 Sum_probs=182.4
Q ss_pred CcccchHHHHHHhhcchhhhcCCCCCccHHHHHHHHHHhHHH-HhhhcCCCCCCCCCCCCceEEEEEEECC-eEEEEEec
Q 024852 3 YKQHGFLRYLINRLLIPFRKVKQKPTDSLDKWAYHYMSDFFF-VAFLEGPHSDFHGPTSGSTACVAIIRDK-QLVVANAG 80 (261)
Q Consensus 3 ~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~GtT~~v~~i~~~-~l~vanvG 80 (261)
.+|+..|.|+.++|...+.+........ .+...++...|. ..+............+|||++++++.++ +|||||+|
T Consensus 84 HGG~~~A~~~~~~L~~~l~~~~~~~~~~--~~~~~a~~~~F~~~~D~~~~~~~~~~~~~gstav~~vi~~~~~l~vaN~G 161 (330)
T KOG0698|consen 84 HGGDLAAKFAAKHLHKNLLEQLAFPKDR--QDVKDALRRAFLTKTDSEFLEKREDNRSGGSTAVVALIKKGRKLYVANVG 161 (330)
T ss_pred CCCHHHHHHHHHHHHHHHHhhhhcccch--HHHHHHHHHHHHHHHHHHHHhhccCCCCCcceeeeeeEecCCEEEEEEcC
Confidence 4677889999999997666554444433 334455666666 3555433222224578888888888855 99999999
Q ss_pred cccEEEEeCC-cccccCCCCCCCcHHHHHHHHHhCCeEE----eccccCceeccccccchhhhhcCCCCccCCeeeeCCc
Q 024852 81 DSRCVLSRKG-QALNLSKDHKPDLEVEKDRILKAGGFIQ----VGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPD 155 (261)
Q Consensus 81 DSr~~l~r~~-~~~~lt~dH~~~~~~e~~ri~~~~~~~~----~~r~~~~~~ltrslGd~~~k~~~~~~~~~~~v~~~p~ 155 (261)
|||+++++.+ .+++||.||+|....|++||...||.+. .+|++|.++++|+|||..+|. ++|+++|+
T Consensus 162 DSRaVl~~~~~~a~~Ls~DHkP~~~~E~~RI~~~GG~v~~~~~~~Rv~G~LavsRa~GD~~~k~--------~~v~a~Pe 233 (330)
T KOG0698|consen 162 DSRAVLSRKGGVAVQLSVDHKPDREDERERIEAAGGRVSNWGGVWRVNGVLAVSRAFGDVELKS--------QGVIAEPE 233 (330)
T ss_pred CCcEEEecCCCeeeeCCCCCCCCcHHHHHHHHHcCCEEEEcCCcceEeceEEEeeecCCHHhcC--------CcEecCCc
Confidence 9999999765 8999999999999999999999999999 359999999999999999884 56899999
Q ss_pred eEEEEecCCCeEEEEEcCCccCCCCHHHHHHHHHhhhcCCCCHHHHHHHHHHHhhcCCCCCCCCCCeeEEEEEcCCCCCC
Q 024852 156 ISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETKLSVICEKVFDRCLAPSAGGEGCDNMTMILVQFKNASNN 235 (261)
Q Consensus 156 i~~~~l~~~d~~lvL~SDGl~d~l~~~ei~~iv~~~~~~~~~~~~~a~~l~~~a~~~~~~~g~~DNiTvivv~~~~~~~~ 235 (261)
+...++.+.|.||||+||||||+++++|++++|+........+..++..+...+.. +++.||+|||||.|.++...
T Consensus 234 i~~~~~~~~deFLiLasDGiwDv~s~qeav~~V~~~~~~~~~~~~a~~~l~~~a~~----~~s~DnitvvvV~l~~~~~~ 309 (330)
T KOG0698|consen 234 IQQVKINSDDEFLILASDGIWDVVSNQEAVDLVRDELASISSPLAAAKLLATEALS----RGSKDNITVVVVRLKSSPKS 309 (330)
T ss_pred eEEEEcCCCCcEEEEeCCchhcccChHHHHHHHHHHhhccccHHHHHHHHHHHHhh----cCCCCCeEEEEEEecCcccc
Confidence 99999999999999999999999999999999998654456889999999999988 89999999999999986544
No 4
>PTZ00224 protein phosphatase 2C; Provisional
Probab=100.00 E-value=2.9e-37 Score=280.81 Aligned_cols=215 Identities=31% Similarity=0.497 Sum_probs=171.4
Q ss_pred CcccchHHHHHHhhcchhhhcCCCCCccHHHHHHHHHHhHHHHhhhcCCCCCCCCCCCCceEEEEEEE-CCeEEEEEecc
Q 024852 3 YKQHGFLRYLINRLLIPFRKVKQKPTDSLDKWAYHYMSDFFFVAFLEGPHSDFHGPTSGSTACVAIIR-DKQLVVANAGD 81 (261)
Q Consensus 3 ~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GtT~~v~~i~-~~~l~vanvGD 81 (261)
.+|+..++++.+.|...+.+.. .....+. +.+.+...+.+..... ..+|||++++++. +.+++||||||
T Consensus 57 HgG~~~S~~~~~~l~~~l~~~~---~~~~~~~----l~~a~~~~d~~i~~~~---~~~GsTatv~lI~~~~~l~vaNVGD 126 (381)
T PTZ00224 57 HVNDECSQYLARAWPQALEKEP---EPMTDER----MEELCLEIDEEWMDSG---REGGSTGTFCVIMKDVHLQVGNVGD 126 (381)
T ss_pred CCcHHHHHHHHHHHHHHHHhcc---ccccHHH----HHHHHHHHHHHHHhcc---cCCCCeEEEEEEEECCEEEEEEccc
Confidence 4567778888888875443221 1111222 3333333332211111 1369999998876 67999999999
Q ss_pred ccEEEEeCCcccccCCCCCCCcHHHHHHHHHhCCeEEeccccCceeccccccchhhhhcCCCCccCCeeeeCCceEEEEe
Q 024852 82 SRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIEL 161 (261)
Q Consensus 82 Sr~~l~r~~~~~~lt~dH~~~~~~e~~ri~~~~~~~~~~r~~~~~~ltrslGd~~~k~~~~~~~~~~~v~~~p~i~~~~l 161 (261)
||+|++|+|++++||+||++.++.|+.||...++.+...|++|.+.+||+|||..+|..+..+...+.|+++|++..+++
T Consensus 127 SRayl~r~g~~~~LT~DH~~~~~~E~~RI~~~gg~v~~~Rv~G~l~vTRalGd~~~K~~~~~~~~~~~v~~~Pdi~~~~l 206 (381)
T PTZ00224 127 SRVLVCRDGKLVFATEDHKPNNPGERQRIEACGGRVVSNRVDGDLAVSRAFGDRSFKVKGTGDYLEQKVIAVPDVTHLTC 206 (381)
T ss_pred ceEEEEECCEEEEcccCCCCCCHHHHhHHHHccCEeccccccCceeeecccCCcccccccccccccCcceeeeEEEEEEC
Confidence 99999999999999999999999999999999999998999999999999999998876643344556789999999999
Q ss_pred cCCCeEEEEEcCCccC-CCCHHHHHHHHHhhhcCCCCHHHHHHHHHHHhhcCCCCCCCCCCeeEEEEEcCCC
Q 024852 162 CDDDEFLVIACDGIWD-CLSSQELVDFVRDQLTNETKLSVICEKVFDRCLAPSAGGEGCDNMTMILVQFKNA 232 (261)
Q Consensus 162 ~~~d~~lvL~SDGl~d-~l~~~ei~~iv~~~~~~~~~~~~~a~~l~~~a~~~~~~~g~~DNiTvivv~~~~~ 232 (261)
.++| ||||||||||| ++++++|.+++.+......+++.+|+.|++.|+. +|+.||||||||++...
T Consensus 207 ~~~D-~llLaSDGL~d~~ls~eEi~~iv~~~l~~~~~~~~aA~~Lv~~A~~----rGs~DNITvIvV~~~~~ 273 (381)
T PTZ00224 207 QSND-FIILACDGVFEGNFSNEEVVAFVKEQLETCDDLAVVAGRVCDEAIR----RGSKDNISCLIVQLKDG 273 (381)
T ss_pred CCCC-EEEEECCCcCcCccCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh----cCCCCCEEEEEEEeeCC
Confidence 9998 88899999999 8999999999986554456899999999999999 89999999999999754
No 5
>PF00481 PP2C: Protein phosphatase 2C; InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 2I0O_A 2POP_C 2POM_A 2J4O_A 2I44_B 3MQ3_A 3N3C_A 2PNQ_B 2P8E_A 2IQ1_A ....
Probab=100.00 E-value=4.4e-38 Score=273.68 Aligned_cols=210 Identities=38% Similarity=0.555 Sum_probs=157.3
Q ss_pred CcccchHHHHHHhhcchhhhcCCCCCc-cHHHHHHHHHHhHHHHhhhcCCCCCCCCCCCCceEEEEEEECCeEEEEEecc
Q 024852 3 YKQHGFLRYLINRLLIPFRKVKQKPTD-SLDKWAYHYMSDFFFVAFLEGPHSDFHGPTSGSTACVAIIRDKQLVVANAGD 81 (261)
Q Consensus 3 ~~~~~~a~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GtT~~v~~i~~~~l~vanvGD 81 (261)
.+|...+.++...+...+.+....... ...+.+...+.......+....+.. ....+|||++++++.++++|+|||||
T Consensus 42 hgG~~~a~~~~~~l~~~l~~~~~~~~~~~~~~al~~a~~~~~~~~~~~~~~~~-~~~~~GsTa~v~li~~~~l~vanvGD 120 (254)
T PF00481_consen 42 HGGSEAAEYASQNLPEFLKENLSFNDGNDIEEALRQAFLAFTDESLYSDSENN-ESSKSGSTATVALIDGNKLYVANVGD 120 (254)
T ss_dssp ESSSHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHH-THTTSEEEEEEEEEETTEEEEEEESS
T ss_pred CCChhhHHHHHHHHHHHHHhhcccccccchhhcccceeeeccccccccccccc-ccccccccccccccccceeEEEeeee
Confidence 356677888888887555443332222 2333333322221111111100012 45679999999999999999999999
Q ss_pred ccEEEEeCCccc-ccCCCCCCCcHHHHHHHHHhCCeEE-eccccCceeccccccchhhhhcCCCCccCCeeeeCCceEEE
Q 024852 82 SRCVLSRKGQAL-NLSKDHKPDLEVEKDRILKAGGFIQ-VGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTI 159 (261)
Q Consensus 82 Sr~~l~r~~~~~-~lt~dH~~~~~~e~~ri~~~~~~~~-~~r~~~~~~ltrslGd~~~k~~~~~~~~~~~v~~~p~i~~~ 159 (261)
||+|+++.+... +||+||++.++.|+.||...||.+. ..|+++.+++||+|||..+|..+ .++|+++|++..+
T Consensus 121 Sravl~~~~~~~~~Lt~dH~~~~~~E~~RI~~~gg~v~~~~rv~g~l~~sRalGd~~~k~~~-----~~~v~~~P~i~~~ 195 (254)
T PF00481_consen 121 SRAVLCRNGGIIKQLTRDHKPSNPDERERIRKAGGRVSENGRVNGVLAVSRALGDFDLKPPG-----KPGVIAEPDISEV 195 (254)
T ss_dssp -EEEEEETTEEEEESS---STTSHHHHHHHHHTT-GEEETEEETTTBSSSB-EE-GGGTTCT-----SSSSB---EEEEE
T ss_pred eeeeeeeccccccccccccccchhhccceeeccccccccchhhhhccccccccccccccccc-----cceeeeecccccc
Confidence 999999999888 9999999999999999999999999 79999999999999999988543 4678999999999
Q ss_pred EecCCCeEEEEEcCCccCCCCHHHHHHHHHhhhcCCCCHHHHHHHHHHHhhcCCCCCCCCCCe
Q 024852 160 ELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETKLSVICEKVFDRCLAPSAGGEGCDNM 222 (261)
Q Consensus 160 ~l~~~d~~lvL~SDGl~d~l~~~ei~~iv~~~~~~~~~~~~~a~~l~~~a~~~~~~~g~~DNi 222 (261)
++.++|.|||||||||||+|+++++.+++......+..++.+|+.|++.|+. +|+.|||
T Consensus 196 ~l~~~d~flvlaSDGlwd~l~~~ei~~~v~~~~~~~~~~~~~a~~L~~~A~~----~gs~DNi 254 (254)
T PF00481_consen 196 DLTPDDEFLVLASDGLWDVLSNEEIVDIVRESLNSGRSPQEAAEKLVDEAIA----RGSKDNI 254 (254)
T ss_dssp EEBTTEEEEEEE-HHHHTTSHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHH----TTHHSHE
T ss_pred cccccceEEEEEcccccccCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHh----cCCCCCC
Confidence 9999999999999999999999999999998765555699999999999999 8999997
No 6
>COG0631 PTC1 Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=5.5e-36 Score=261.38 Aligned_cols=176 Identities=31% Similarity=0.489 Sum_probs=154.5
Q ss_pred HHHHHHHHHHhHHHHhhhcCCCCCCCCCCCCceEEEEEEECCeEEEEEeccccEEEEeCCcccccCCCCCCCcHHHHHHH
Q 024852 31 LDKWAYHYMSDFFFVAFLEGPHSDFHGPTSGSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRI 110 (261)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GtT~~v~~i~~~~l~vanvGDSr~~l~r~~~~~~lt~dH~~~~~~e~~ri 110 (261)
+.+|....+...-....... +.......||||++++++.++++|+|||||||+|++|++.++|||.||++.+..++.|+
T Consensus 80 ~~~~l~~~~~~~n~~i~~~~-~~~~~~~~mgtTl~~~~~~~~~l~~a~vGDSR~yl~~~~~~~~lT~DH~~~~~~~~~~~ 158 (262)
T COG0631 80 LEELLKEAILKANEAIAEEG-QLNEDVRGMGTTLVLLLIRGNKLYVANVGDSRAYLLRDGELKQLTEDHSLVNRLEQRGI 158 (262)
T ss_pred HHHHHHHHHHHHHHHHHHhh-hcccccCCCceeEEEEEEECCeEEEEEccCCeEEEEcCCceEEeccCCcHHHHHHHhcC
Confidence 45555555544444433332 24455678999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCeEEeccccCceeccccccchhhhhcCCCCccCCeeeeCCceEEEEecCCCeEEEEEcCCccCCCCHHHHHHHHHh
Q 024852 111 LKAGGFIQVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRD 190 (261)
Q Consensus 111 ~~~~~~~~~~r~~~~~~ltrslGd~~~k~~~~~~~~~~~v~~~p~i~~~~l~~~d~~lvL~SDGl~d~l~~~ei~~iv~~ 190 (261)
+.+++...++|++ ++||+||+.. .+.|++..+++.++| |+|||||||||.+++++|.+++..
T Consensus 159 ~~~~~~~~~~~~~---~ltralG~~~--------------~~~p~~~~~~~~~~d-~llL~SDGl~d~v~~~~i~~il~~ 220 (262)
T COG0631 159 ITPEEARSHPRRN---ALTRALGDFD--------------LLEPDITELELEPGD-FLLLCSDGLWDVVSDDEIVDILKN 220 (262)
T ss_pred CCHHHHHhCccch---hhhhhcCCCc--------------ccceeEEEEEcCCCC-EEEEECCCCccCcCHHHHHHHHhc
Confidence 9999888888888 9999999998 589999999999997 888999999999999999999986
Q ss_pred hhcCCCCHHHHHHHHHHHhhcCCCCCCCCCCeeEEEEEcCCCC
Q 024852 191 QLTNETKLSVICEKVFDRCLAPSAGGEGCDNMTMILVQFKNAS 233 (261)
Q Consensus 191 ~~~~~~~~~~~a~~l~~~a~~~~~~~g~~DNiTvivv~~~~~~ 233 (261)
..+++++++.+++.|+. +++.||+|+++|++....
T Consensus 221 ----~~~~~~~~~~li~~a~~----~g~~DNiT~ilv~~~~~~ 255 (262)
T COG0631 221 ----SETPQEAADKLIELALE----GGGPDNITVVLVRLNGEG 255 (262)
T ss_pred ----CCCHHHHHHHHHHHHHh----cCCCCceEEEEEEeeccc
Confidence 47899999999999999 899999999999998764
No 7
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=2.3e-35 Score=257.37 Aligned_cols=176 Identities=57% Similarity=0.982 Sum_probs=167.7
Q ss_pred CCCCCceEEEEEEECCeEEEEEeccccEEEEeCCcccccCCCCCCCcHHHHHHHHHhCCeEE-eccccCceeccccccch
Q 024852 57 GPTSGSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQ-VGRVNGSLNLARAIGDV 135 (261)
Q Consensus 57 ~~~~GtT~~v~~i~~~~l~vanvGDSr~~l~r~~~~~~lt~dH~~~~~~e~~ri~~~~~~~~-~~r~~~~~~ltrslGd~ 135 (261)
+..+|||++||++.+++|||||.||||+++.|+|+.+-+|.||+|....|-.||+.+||.+. ..|+||++.++|+|||.
T Consensus 327 G~DSGtTAvVcLv~g~~liVANAGDSRcV~sr~GkAvdmS~DHKPEDevE~~RI~~AGG~vtlDGRVNGGLNLSRA~GDH 406 (542)
T KOG0699|consen 327 GEDSGTTAVVCLVGGDKLIVANAGDSRCVLSRNGKAVDMSVDHKPEDEVETNRIHAAGGQVTLDGRVNGGLNLSRAFGDH 406 (542)
T ss_pred CCCCCceEEEEEecCceEEEecCCCcceEEecCCceeecccCCCcccHHHHHHHHhcCCeEeecceecCccchhhhhhhh
Confidence 45699999999999999999999999999999999999999999999999999999999999 89999999999999999
Q ss_pred hhhhcCCCCccCCeeeeCCceEEEEecCCCeEEEEEcCCccCCCCHHHHHHHHHhhhcCCCCHHHHHHHHHHHhhcCCC-
Q 024852 136 EFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETKLSVICEKVFDRCLAPSA- 214 (261)
Q Consensus 136 ~~k~~~~~~~~~~~v~~~p~i~~~~l~~~d~~lvL~SDGl~d~l~~~ei~~iv~~~~~~~~~~~~~a~~l~~~a~~~~~- 214 (261)
.||....+|++.+.+++-|+|...-|++.|.|+||++||+|++|+.++++++|+..+..+..+..+|+.|+++|+....
T Consensus 407 aYK~N~~Lp~eEQMIsALPDiK~l~lTpedEFmVvACDGIWN~MsSqeVVdFvr~~l~~n~~ls~iceeL~D~CLAp~T~ 486 (542)
T KOG0699|consen 407 AYKKNQELPLEEQMISALPDIKILALTPEDEFMVVACDGIWNSMSSQEVVDFVRDLLAKNSSLSEICEELCDACLAPSTD 486 (542)
T ss_pred hhhcccCCChHHHHhhhcccceeEeecCcccEEEEEccchhhhccHHHHHHHHHHHHhcCchHHHHHHHHHHhhcCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999888889999999999999999766
Q ss_pred -CCCCCCCeeEEEEEcCCC
Q 024852 215 -GGEGCDNMTMILVQFKNA 232 (261)
Q Consensus 215 -~~g~~DNiTvivv~~~~~ 232 (261)
.+..-||+|||++.|.+.
T Consensus 487 GDGTGCDNMT~ii~~Fkrk 505 (542)
T KOG0699|consen 487 GDGTGCDNMTVIITTFKRK 505 (542)
T ss_pred CCCcCCCcceEEEEEeccc
Confidence 345679999999999853
No 8
>KOG0700 consensus Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=7.1e-33 Score=246.31 Aligned_cols=165 Identities=31% Similarity=0.440 Sum_probs=142.4
Q ss_pred cCCCCCCCCCCCCceEEEEEEECCeEEEEEeccccEEEEe---CC---cccccCCCCCCCcHHHHHHHHHhCC----eEE
Q 024852 49 EGPHSDFHGPTSGSTACVAIIRDKQLVVANAGDSRCVLSR---KG---QALNLSKDHKPDLEVEKDRILKAGG----FIQ 118 (261)
Q Consensus 49 ~~~~~~~~~~~~GtT~~v~~i~~~~l~vanvGDSr~~l~r---~~---~~~~lt~dH~~~~~~e~~ri~~~~~----~~~ 118 (261)
......++.+.+|+||+|++++++.|||||+|||||+|.+ ++ ..+|||.||+..++.|+.||...+. .+.
T Consensus 190 ~~~~~~p~lA~~GSC~Lv~~i~~~~LyVaN~GDSRAVLG~~~~~~~~~~A~qLS~dHn~~ne~Ev~Rir~eHPdd~~~vv 269 (390)
T KOG0700|consen 190 KQLQENPELALVGSCCLVGLIKGGDLYVANVGDSRAVLGVVENNGSWLVAVQLSTDHNASNEDEVRRIRSEHPDDPHIVV 269 (390)
T ss_pred HhhccchhhhhhcceEEEEEEeCCeEEEEecCcchhhhceecCCCCeEEEEecChhhccccHHHHHHHHHhCCCCcceEe
Confidence 3455666778899999999999999999999999999963 33 4789999999999999999999985 223
Q ss_pred --eccccCceeccccccchhhhhcCC------------CCccCCeeeeCCceEEEEecCCCeEEEEEcCCccCCCCHHHH
Q 024852 119 --VGRVNGSLNLARAIGDVEFKLNKS------------LPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQEL 184 (261)
Q Consensus 119 --~~r~~~~~~ltrslGd~~~k~~~~------------~~~~~~~v~~~p~i~~~~l~~~d~~lvL~SDGl~d~l~~~ei 184 (261)
+.|+.|.+.+||||||.++|++.. ++.+.|+++++|+++.++|.+.|.||||+|||||++|+++|+
T Consensus 270 ~~~~RvkG~L~vsRAfGd~~lK~~~~n~e~l~~~fr~~~~~t~PyltaeP~i~~HrL~p~DkFLIlASDGLwE~lsNeea 349 (390)
T KOG0700|consen 270 NKHWRVKGILQVSRAFGDGYLKWPEFNQEPLLEKFRIPYIGTPPYLTAEPSITHHKLTPNDKFLILASDGLWEYLSNEEA 349 (390)
T ss_pred eccceeeEEEEeeeeccceeecchhhccchhHhhcCCCCCCCCCceeccceEEEEEcCCCCeEEEEeccchhhhcChHHH
Confidence 459999999999999999998774 345799999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCCHHHHHHHHHHHhhcCC
Q 024852 185 VDFVRDQLTNETKLSVICEKVFDRCLAPS 213 (261)
Q Consensus 185 ~~iv~~~~~~~~~~~~~a~~l~~~a~~~~ 213 (261)
+.+|..++.....-+.+|+.|++.|+.+.
T Consensus 350 V~lV~~~i~~~~pd~~~A~hLIr~aL~~a 378 (390)
T KOG0700|consen 350 VSLVHEFISGKFPDGNPATHLIRHALGRA 378 (390)
T ss_pred HHHHHHhhccCCCCCCHHHHHHHHHHhhh
Confidence 99999976643344567888888888743
No 9
>smart00332 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain. The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=99.97 E-value=6e-30 Score=221.25 Aligned_cols=208 Identities=42% Similarity=0.586 Sum_probs=160.7
Q ss_pred cccchHHHHHHhhcchhhhcCCCCCccHHHHHHHHHHhHHHHhhhcC---CCCCCCCCCCCceEEEEEEECCeEEEEEec
Q 024852 4 KQHGFLRYLINRLLIPFRKVKQKPTDSLDKWAYHYMSDFFFVAFLEG---PHSDFHGPTSGSTACVAIIRDKQLVVANAG 80 (261)
Q Consensus 4 ~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~GtT~~v~~i~~~~l~vanvG 80 (261)
+++..++++.+.+...+.+......... ......+...+..+.... .........+|||++++++..++++++|+|
T Consensus 44 gg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~l~~~~vG 122 (255)
T smart00332 44 GGSEAAKFLSKNLPEILAEELIKHKDEL-EDVEEALRKAFLKTDEEILEELESLEEDAGSGSTAVVALISGNKLYVANVG 122 (255)
T ss_pred CcHHHHHHHHHHHHHHHHHhHhhcccch-hHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccEEEEEEECCEEEEEecc
Confidence 3455667777777654444332222110 112223333333333321 111123457999999999999999999999
Q ss_pred cccEEEEeCCcccccCCCCCCCcHHHHHHHHHhCCeEEeccccCceeccccccchhhhhcCCCCccCCeeeeCCceEEEE
Q 024852 81 DSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIE 160 (261)
Q Consensus 81 DSr~~l~r~~~~~~lt~dH~~~~~~e~~ri~~~~~~~~~~r~~~~~~ltrslGd~~~k~~~~~~~~~~~v~~~p~i~~~~ 160 (261)
|||+|++|++++.+||.||++.+..+..|+...++.+...+.++.+.+||++|+..+| +.+..+|++...+
T Consensus 123 Dsr~y~~~~~~~~~lt~dh~~~~~~~~~~i~~~~~~~~~~~~~~~~~lt~~~g~~~~~---------~~i~~~p~~~~~~ 193 (255)
T smart00332 123 DSRAVLCRNGKAVQLTEDHKPSNEDERARIEAAGGFVINGRVNGVLALSRAIGDFFLK---------PYVSAEPDVTVVE 193 (255)
T ss_pred CceEEEEeCCceeEcCCCCCCcCHHHHHHHHHcCCEEECCeECCeEecccccCCHhhc---------CCeEeeeEEEEEE
Confidence 9999999999999999999999999999999999988777888889999999998865 5568899999999
Q ss_pred e-cCCCeEEEEEcCCccCCCCHHHHHHHHHhhhcCCCCHHHHHHHHHHHhhcCCCCCCCCCCeeEEEE
Q 024852 161 L-CDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETKLSVICEKVFDRCLAPSAGGEGCDNMTMILV 227 (261)
Q Consensus 161 l-~~~d~~lvL~SDGl~d~l~~~ei~~iv~~~~~~~~~~~~~a~~l~~~a~~~~~~~g~~DNiTvivv 227 (261)
+ .++| +|||||||||++++++++.+++...... .++.++|+.|++.|.. ++..||+||||+
T Consensus 194 ~~~~~d-~ill~SDGv~~~l~~~~i~~~~~~~~~~-~~~~~~~~~l~~~a~~----~~~~Dn~T~ivv 255 (255)
T smart00332 194 LTEKDD-FLILASDGLWDVLSNQEVVDIVRKHLSK-SDPEEAAKRLIDLALA----RGSKDNITVIVV 255 (255)
T ss_pred ecCCCc-EEEEECCccccCCCHHHHHHHHHHHhhc-CCHHHHHHHHHHHHHH----cCCCCCeEEEEC
Confidence 6 7878 7779999999999999999999875322 2689999999999999 789999999985
No 10
>cd00143 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=99.97 E-value=6e-30 Score=220.61 Aligned_cols=160 Identities=48% Similarity=0.768 Sum_probs=141.5
Q ss_pred CCCCCCCceEEEEEEECCeEEEEEeccccEEEEeCCcccccCCCCCCCcHHHHHHHHHhCCeEEeccccCceeccccccc
Q 024852 55 FHGPTSGSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQVGRVNGSLNLARAIGD 134 (261)
Q Consensus 55 ~~~~~~GtT~~v~~i~~~~l~vanvGDSr~~l~r~~~~~~lt~dH~~~~~~e~~ri~~~~~~~~~~r~~~~~~ltrslGd 134 (261)
.....+|||++++++.++.++++|+||||+|++++++++++|.||++.++.++.|+...++.....+.++...+||+||+
T Consensus 94 ~~~~~~gtT~~~~~~~~~~l~~~~vGDsr~~~~~~~~~~~lt~dh~~~~~~~~~~i~~~~~~~~~~~~~~~~~~t~~lG~ 173 (254)
T cd00143 94 PDDARSGTTAVVALIRGNKLYVANVGDSRAVLCRNGEAVQLTKDHKPVNEEERERIEKAGGRVSNGRVPGVLAVTRALGD 173 (254)
T ss_pred cCCCCCCCcEEEEEEECCEEEEEEecCcEEEEEcCCceeEcCCCCCCcChHHHHHHHHcCCcEEeCEEcCceeeccccCC
Confidence 34567999999999999999999999999999999999999999999999999999999987766667778899999999
Q ss_pred hhhhhcCCCCccCCeeeeCCceEEEEe-cCCCeEEEEEcCCccCCCCHHHHHHHHHhhhcCCCCHHHHHHHHHHHhhcCC
Q 024852 135 VEFKLNKSLPAEKQIVTANPDISTIEL-CDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETKLSVICEKVFDRCLAPS 213 (261)
Q Consensus 135 ~~~k~~~~~~~~~~~v~~~p~i~~~~l-~~~d~~lvL~SDGl~d~l~~~ei~~iv~~~~~~~~~~~~~a~~l~~~a~~~~ 213 (261)
..+| +++..+|++..+++ +++| +|+|||||||+++++++|.+++.....+ .+++++|+.|++.|..
T Consensus 174 ~~~~---------~~~~~~~~~~~~~l~~~~d-~ill~SDG~~~~l~~~~i~~~~~~~~~~-~~~~~~a~~l~~~a~~-- 240 (254)
T cd00143 174 FDLK---------PGVSAEPDVTVVKLTEDDD-FLILASDGLWDVLSNQEAVDIVRSELAK-EDLQEAAQELVDLALR-- 240 (254)
T ss_pred cccc---------CCEEcCCeEEEEEeCCCCc-EEEEECCCCeeccChHHHHHHHHHHhcc-cCHHHHHHHHHHHHHh--
Confidence 9765 33578999999999 8888 7779999999999999999999874211 2799999999999998
Q ss_pred CCCCCCCCeeEEEEEc
Q 024852 214 AGGEGCDNMTMILVQF 229 (261)
Q Consensus 214 ~~~g~~DNiTvivv~~ 229 (261)
.+..||+|||++++
T Consensus 241 --~~~~Dn~t~i~~~~ 254 (254)
T cd00143 241 --RGSHDNITVVVVRL 254 (254)
T ss_pred --CCCCCCEEEEEEeC
Confidence 77899999999975
No 11
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=99.97 E-value=1e-29 Score=243.55 Aligned_cols=200 Identities=23% Similarity=0.253 Sum_probs=138.8
Q ss_pred HHHHHHhhcchhhhcCCCCCccHHHHHHHHHHhHHHHhhhcCC-CCCCCCCCCCceEEEEEEECCeEEEEEeccccEEEE
Q 024852 9 LRYLINRLLIPFRKVKQKPTDSLDKWAYHYMSDFFFVAFLEGP-HSDFHGPTSGSTACVAIIRDKQLVVANAGDSRCVLS 87 (261)
Q Consensus 9 a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~GtT~~v~~i~~~~l~vanvGDSr~~l~ 87 (261)
++++++.+...+.+..... ....+++..++..+......... .......+||||++++++.++++|++||||||+|++
T Consensus 433 S~lAv~~L~~~~~~~~~~~-~~~~~~L~~ai~~AN~~I~~~~~~~~~~~~~~MGTTlv~alI~~~~l~ianVGDSRaYli 511 (645)
T PRK14559 433 SALAVETLQQYFQQHWQDE-LPDEETIREAIYLANEAIYDLNQQNARSGSGRMGTTLVMALVQDTQVAVAHVGDSRLYRV 511 (645)
T ss_pred HHHHHHHHHHHHHhhhccc-ccHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCceeeeEEEECCEEEEEEecCceEEEE
Confidence 4455666654443221111 11234444444444333332211 111234569999999999999999999999999998
Q ss_pred -eCCcccccCCCCCCCcHHHHHHHHHhCCeEEeccccCceeccccccchhhhhcCCCCccCCeeeeCCceEEEEecCCCe
Q 024852 88 -RKGQALNLSKDHKPDLEVEKDRILKAGGFIQVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDE 166 (261)
Q Consensus 88 -r~~~~~~lt~dH~~~~~~e~~ri~~~~~~~~~~r~~~~~~ltrslGd~~~k~~~~~~~~~~~v~~~p~i~~~~l~~~d~ 166 (261)
|+|++++||+||++.+.+.+.++.... ...+++.+.+||+||+...+ ..+|++..+++.++|
T Consensus 512 ~r~g~l~QLT~DHs~~~~lv~~Gi~~~~----a~~~p~~~~LTrALG~~~~~------------~l~Pdi~~~~L~~gD- 574 (645)
T PRK14559 512 TRKGGLEQLTVDHEVGQREIQRGVEPQI----AYARPDAYQLTQALGPRDNS------------AIQPDIQFLEIEEDT- 574 (645)
T ss_pred ecCCeEEEeCCCCCHHHHHHHhCCCHHH----HhcCcccceeeeccCCCCCC------------cccceEEEEEcCCCC-
Confidence 578999999999998776665532111 11124566999999987532 468999999999988
Q ss_pred EEEEEcCCccCC--CCH---HHHHHHHHhhhcCCCCHHHHHHHHHHHhhcCCCCCCCCCCeeEEEEEcCCCCC
Q 024852 167 FLVIACDGIWDC--LSS---QELVDFVRDQLTNETKLSVICEKVFDRCLAPSAGGEGCDNMTMILVQFKNASN 234 (261)
Q Consensus 167 ~lvL~SDGl~d~--l~~---~ei~~iv~~~~~~~~~~~~~a~~l~~~a~~~~~~~g~~DNiTvivv~~~~~~~ 234 (261)
++|||||||||+ +.+ +++..++.. ..+++++++.|++.|+. +|+.||+|||||++...+.
T Consensus 575 ~lLLCSDGL~D~~~ve~~~~~~l~~il~~----~~~l~~aa~~Li~~Al~----~gg~DNITvIvV~l~~~p~ 639 (645)
T PRK14559 575 LLLLCSDGLSDNDLLETHWQTHLLPLLSS----SANLDQGLNKLIDLANQ----YNGHDNITAILVRLKVRPQ 639 (645)
T ss_pred EEEEECCCCCCCcccchHHHHHHHHHHhc----CCCHHHHHHHHHHHHHH----cCCCCcEEEEEEEeccCCC
Confidence 677999999994 443 233444433 56899999999999998 8899999999999986443
No 12
>KOG1323 consensus Serine/threonine phosphatase [Signal transduction mechanisms]
Probab=99.89 E-value=2.9e-22 Score=173.98 Aligned_cols=199 Identities=25% Similarity=0.379 Sum_probs=151.8
Q ss_pred HHHHHHHHHhHHHHhhhcCC-CCCCCCCCCCceEEEEEEECCeEEEEEeccccEEEEeCCcccccCCCCCCCcHHHHHHH
Q 024852 32 DKWAYHYMSDFFFVAFLEGP-HSDFHGPTSGSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRI 110 (261)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~GtT~~v~~i~~~~l~vanvGDSr~~l~r~~~~~~lt~dH~~~~~~e~~ri 110 (261)
+....-+++.+|+++++... +.......+|||+++++.--++||+||.||||++++|++++.+||.+-+| +-|++|+
T Consensus 217 E~LViGAlEsAFqemDeqiarer~~~~~~GGCtalvvi~llGKlYvaNAGDsRAIlVrndeirplS~efTP--etERqRl 294 (493)
T KOG1323|consen 217 EHLVIGALESAFQEMDEQIARERQVWRLPGGCTALVVIVLLGKLYVANAGDSRAILVRNDEIRPLSKEFTP--ETERQRL 294 (493)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeeeccceEEccCCCceEEEEecCCeeecccccCc--HHHHHHH
Confidence 34455678888888887743 33333445899999999999999999999999999999999999999998 4567776
Q ss_pred HHhC--------CeEE-----------------------------------------------eccccCceeccccccch
Q 024852 111 LKAG--------GFIQ-----------------------------------------------VGRVNGSLNLARAIGDV 135 (261)
Q Consensus 111 ~~~~--------~~~~-----------------------------------------------~~r~~~~~~ltrslGd~ 135 (261)
..-. .... ..|+-..+.+||-|||.
T Consensus 295 Q~Laf~~PeLlgneFtrLEfprRl~~~dLgqrvLyRD~~MtGWayKtve~~DLr~pLI~gegrkaRll~TigVsRGlGDH 374 (493)
T KOG1323|consen 295 QELAFRNPELLGNEFTRLEFPRRLTIKDLGQRVLYRDWNMTGWAYKTVEEEDLRFPLISGEGRKARLLATIGVSRGLGDH 374 (493)
T ss_pred HHHhhcChHhhcccccceecccccChhhhcceeeeeccccccceeehhhhhcCCcceecccchhhhhhhhheeccccCcc
Confidence 5432 0000 22333568999999999
Q ss_pred hhhhcCCCCccCCeeeeCCceEEEEecC----CCeEEEEEcCCccCCCCHHHHHHHHHhhhcCCC--CHH---HHHHHHH
Q 024852 136 EFKLNKSLPAEKQIVTANPDISTIELCD----DDEFLVIACDGIWDCLSSQELVDFVRDQLTNET--KLS---VICEKVF 206 (261)
Q Consensus 136 ~~k~~~~~~~~~~~v~~~p~i~~~~l~~----~d~~lvL~SDGl~d~l~~~ei~~iv~~~~~~~~--~~~---~~a~~l~ 206 (261)
.+|-......-.|.+++.|++...+|.+ .|.++||+|||+||+++++|+..+|...+.... ++. .+|+.++
T Consensus 375 ~Lkv~dsnl~iKPFLssvPeV~V~dl~q~e~~~DdVvilatDGLWDVlSneeva~~Vrs~L~~~dp~Dp~RYt~aaqdlv 454 (493)
T KOG1323|consen 375 HLKVVDSNLSIKPFLSSVPEVRVYDLRQYEHLTDDVVILATDGLWDVLSNEEVALIVRSFLPSTDPADPSRYTQAAQDLV 454 (493)
T ss_pred eeeeecCCcccchhhhcCCeeEEEehhhhccCCCcEEEEecCchhhhcccHHHHHHHHHhcCCCCCCChhHHHHHHHHHH
Confidence 9998887777788899999999987764 244899999999999999999999998765432 333 4667777
Q ss_pred HHhhcC-----CC----CCCCCCCeeEEEEEcCCC
Q 024852 207 DRCLAP-----SA----GGEGCDNMTMILVQFKNA 232 (261)
Q Consensus 207 ~~a~~~-----~~----~~g~~DNiTvivv~~~~~ 232 (261)
..|... |. +.++.|||||.||-+...
T Consensus 455 a~arg~~k~rgWr~~n~~lgSgDDIsVfVIPL~~~ 489 (493)
T KOG1323|consen 455 AAARGQQKDRGWRMNNGGLGSGDDISVFVIPLKYC 489 (493)
T ss_pred HHhcCccCCCceeccCCCcCCCCceEEEEEeccCC
Confidence 666432 33 456789999999988754
No 13
>KOG1379 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.83 E-value=2.3e-19 Score=155.48 Aligned_cols=137 Identities=25% Similarity=0.441 Sum_probs=106.8
Q ss_pred CCCCceEEEEEEE--CCeEEEEEeccccEEEEeCCcccccCCCCCCCcHHHHHHHHHhCCeEEeccccCceecc------
Q 024852 58 PTSGSTACVAIIR--DKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQVGRVNGSLNLA------ 129 (261)
Q Consensus 58 ~~~GtT~~v~~i~--~~~l~vanvGDSr~~l~r~~~~~~lt~dH~~~~~~e~~ri~~~~~~~~~~r~~~~~~lt------ 129 (261)
..++|||+++.+. +++||+||+|||.+.++|+|++++.|..+...- |--++|+
T Consensus 165 ~vGSSTAcI~~l~~~~~~Lh~aNLGDSGF~VvR~G~vv~~S~~Q~H~F-------------------N~PyQLs~~p~~~ 225 (330)
T KOG1379|consen 165 IVGSSTACILALDRENGKLHTANLGDSGFLVVREGKVVFRSPEQQHYF-------------------NTPYQLSSPPEGY 225 (330)
T ss_pred CCCcceeeeeeeecCCCeEEEeeccCcceEEEECCEEEEcCchheecc-------------------CCceeeccCCccc
Confidence 3578889888888 899999999999999999999999998765320 1111222
Q ss_pred -ccccchhhhhcCCCCccCCeeeeCCceEEEEecCCCeEEEEEcCCccCCCCHHHHHHHHHhhhc-CCCCHHHHHHHHHH
Q 024852 130 -RAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLT-NETKLSVICEKVFD 207 (261)
Q Consensus 130 -rslGd~~~k~~~~~~~~~~~v~~~p~i~~~~l~~~d~~lvL~SDGl~d~l~~~ei~~iv~~~~~-~~~~~~~~a~~l~~ 207 (261)
.+++|. .-..+...+++++|| +|||+||||||+|.+++|.+++..... ...+++..|++|++
T Consensus 226 ~~~~~d~---------------p~~ad~~~~~v~~GD-vIilATDGlfDNl~e~~Il~il~~~~~~~~~~lq~~A~~ia~ 289 (330)
T KOG1379|consen 226 SSYISDV---------------PDSADVTSFDVQKGD-VIILATDGLFDNLPEKEILSILKGLDARGNLDLQVTAQKIAE 289 (330)
T ss_pred cccccCC---------------ccccceEEEeccCCC-EEEEecccccccccHHHHHHHHHHhhccccccHHHHHHHHHH
Confidence 123332 123578889999999 788999999999999999999988666 56789999999999
Q ss_pred HhhcC-------------------CCCCCCCCCeeEEEEEc
Q 024852 208 RCLAP-------------------SAGGEGCDNMTMILVQF 229 (261)
Q Consensus 208 ~a~~~-------------------~~~~g~~DNiTvivv~~ 229 (261)
.|.+. ...+|+.|||||||..+
T Consensus 290 ~Ar~ls~d~~~~SPFA~~Ar~~g~~~~gGK~DdITvvls~v 330 (330)
T KOG1379|consen 290 KARELSRDPKFQSPFAQAAREHGFKAYGGKPDDITVVLSSV 330 (330)
T ss_pred HHHHhccCcCcCChHHHHHHHhCcccCCCCcccEEEEEecC
Confidence 88653 12366899999999753
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.72 E-value=3e-17 Score=158.91 Aligned_cols=173 Identities=27% Similarity=0.412 Sum_probs=150.9
Q ss_pred HHhHHHHhhhcCCCCCCCCCCCCceEEEEEEECC--------eEEEEEeccccEEEEeCCcccccCCCCC-CCcHHHHHH
Q 024852 39 MSDFFFVAFLEGPHSDFHGPTSGSTACVAIIRDK--------QLVVANAGDSRCVLSRKGQALNLSKDHK-PDLEVEKDR 109 (261)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~GtT~~v~~i~~~--------~l~vanvGDSr~~l~r~~~~~~lt~dH~-~~~~~e~~r 109 (261)
+...|....++. +..+..-|..++.|.+..+ ++.+||+|+|.++++++|+-.++|+-.. ..+++|.+|
T Consensus 591 mr~~fl~~~rkl---g~~g~~lg~~~~~~~i~~d~~~~asS~~l~~Anvg~c~avls~ng~~~p~t~~~~~~v~~eE~~R 667 (1081)
T KOG0618|consen 591 MRNTFLRLNRKL---GEEGQVLGGSVVLCQIVEDSLSPASSKTLFAANVGTCMAVLSRNGKPLPTTRSPMLEVDREEYKR 667 (1081)
T ss_pred HHHHHHHHhhhh---hhhhccccchhhheeecccccCcccchhhhHhhhccchhhhhhcCCcCcccccccccCCHHHHHH
Confidence 566666665553 4445566777777777644 7899999999999999999999998864 448999999
Q ss_pred HHHhCCeEE-eccccCceeccccccchhhhhcCCCCccCCeeeeCCceEEEEecCCCeEEEEEcCCccCCCCHHHHHHHH
Q 024852 110 ILKAGGFIQ-VGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFV 188 (261)
Q Consensus 110 i~~~~~~~~-~~r~~~~~~ltrslGd~~~k~~~~~~~~~~~v~~~p~i~~~~l~~~d~~lvL~SDGl~d~l~~~ei~~iv 188 (261)
|...+|++. ..+++|....||++|.+.. .|.|.+.|++....|++.|+|||+++-++|++|+-+++.+.+
T Consensus 668 I~~~~g~i~ed~k~ngvt~~tR~iG~~~l---------~P~v~p~Phv~~~~Lt~qdE~LIvgn~~lW~~Lsid~a~~~v 738 (1081)
T KOG0618|consen 668 IVDSKGFITEDNKLNGVTSSTRAIGPFSL---------FPHVLPDPHVSVVILTEQDEFLIVGNKQLWSVLSIDTAVDAV 738 (1081)
T ss_pred HHHhcCeecCCCeeeceeeeeeecccccc---------cccccCCCceeeEecccCceEEEEcchHHhhhccHHHHHHHH
Confidence 999999999 8999999999999999974 578899999999999999999999999999999999999999
Q ss_pred HhhhcCCCCHHHHHHHHHHHhhcCCCCCCCCCCeeEEEEEcCC
Q 024852 189 RDQLTNETKLSVICEKVFDRCLAPSAGGEGCDNMTMILVQFKN 231 (261)
Q Consensus 189 ~~~~~~~~~~~~~a~~l~~~a~~~~~~~g~~DNiTvivv~~~~ 231 (261)
++ ..+|-.+|++|++.|.+ -|+.||++|+||++..
T Consensus 739 Rn----~~dpL~AAkKL~d~AqS----Ygc~~nv~vlVv~l~~ 773 (1081)
T KOG0618|consen 739 RN----VEDPLLAAKKLCDLAQS----YGCAENVSVLVVRLNH 773 (1081)
T ss_pred hc----CCchHHHHHHHHHHHHh----cccccCeeEEEEEeec
Confidence 86 57899999999999999 8999999999999843
No 15
>smart00331 PP2C_SIG Sigma factor PP2C-like phosphatases.
Probab=99.55 E-value=2.4e-13 Score=113.03 Aligned_cols=150 Identities=18% Similarity=0.216 Sum_probs=102.8
Q ss_pred cccchHHHHHHhhcchhhhcCCCCCccHHHHHHHHHHhHHHHhhhcCCCCCCCCCCCCceEEEEEE--ECCeEEEEEecc
Q 024852 4 KQHGFLRYLINRLLIPFRKVKQKPTDSLDKWAYHYMSDFFFVAFLEGPHSDFHGPTSGSTACVAII--RDKQLVVANAGD 81 (261)
Q Consensus 4 ~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GtT~~v~~i--~~~~l~vanvGD 81 (261)
++|..|..++..+...+........ ...+... .+...+... ....+|+|++++++ ..++++++|+||
T Consensus 40 G~G~~aa~~s~~~~~~~~~~~~~~~-~~~~~l~-~~n~~l~~~---------~~~~~~~T~~~~~id~~~~~l~~~~~Gd 108 (193)
T smart00331 40 GKGLAAALAMSMARSALRTLLSEGI-SLSQILE-RLNRAIYEN---------GEDGMFATLFLALYDFAGGTLSYANAGH 108 (193)
T ss_pred CCChHHHHHHHHHHHHHHHHhhcCC-CHHHHHH-HHHHHHHhc---------CCCCcEEEEEEEEEECCCCEEEEEeCCC
Confidence 4555666666666655555444321 2222222 122222111 23358999999998 588999999999
Q ss_pred ccEEEEe-CCcccccCCCCCCCcHHHHHHHHHhCCeEEeccccCceeccccccchhhhhcCCCCccCCeeeeCCceEEEE
Q 024852 82 SRCVLSR-KGQALNLSKDHKPDLEVEKDRILKAGGFIQVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIE 160 (261)
Q Consensus 82 Sr~~l~r-~~~~~~lt~dH~~~~~~e~~ri~~~~~~~~~~r~~~~~~ltrslGd~~~k~~~~~~~~~~~v~~~p~i~~~~ 160 (261)
+|+|+++ ++...+++.+ .++.+|... ..+++...++
T Consensus 109 ~~~~~~~~~~~~~~~~~~-----------------------------~~~~lG~~~--------------~~~~~~~~~~ 145 (193)
T smart00331 109 SPPYLLRADGGLVEDLDD-----------------------------LGAPLGLEP--------------DVEVDVRELT 145 (193)
T ss_pred CceEEEECCCCeEEEcCC-----------------------------CCceeeeCC--------------CCcceeEEEe
Confidence 9999998 5655555553 234666654 3456788899
Q ss_pred ecCCCeEEEEEcCCccCCCCHHHHHHHHHhhhcCCCCHHHHHHHHHHHhh
Q 024852 161 LCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETKLSVICEKVFDRCL 210 (261)
Q Consensus 161 l~~~d~~lvL~SDGl~d~l~~~ei~~iv~~~~~~~~~~~~~a~~l~~~a~ 210 (261)
++++| .|+|+|||||+.++.+++.+++.+.. ..+++++++++++.+.
T Consensus 146 l~~gd-~l~l~TDGl~e~~~~~~l~~~l~~~~--~~~~~~~~~~i~~~~~ 192 (193)
T smart00331 146 LEPGD-LLLLYTDGLTEARNPERLEELLEELL--GSPPAEIAQRILEELL 192 (193)
T ss_pred eCCCC-EEEEECCCccccCChHHHHHHHHHhc--CCCHHHHHHHHHHHHh
Confidence 99999 56699999999999999999998753 3568899998888653
No 16
>PF13672 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 2V06_A 2JFR_A 2J86_A 2J82_A 2Y09_A 2XZV_A 2CM1_A 1TXO_B ....
Probab=99.49 E-value=3.3e-14 Score=119.92 Aligned_cols=150 Identities=21% Similarity=0.393 Sum_probs=78.6
Q ss_pred hHHHHHHhhcchhhhcCCCCCcc-HHHHHHHHHHhHHHHh--hhcCCCCCCCCCCCCceEEEEEEECCeEEEEEeccccE
Q 024852 8 FLRYLINRLLIPFRKVKQKPTDS-LDKWAYHYMSDFFFVA--FLEGPHSDFHGPTSGSTACVAIIRDKQLVVANAGDSRC 84 (261)
Q Consensus 8 ~a~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~GtT~~v~~i~~~~l~vanvGDSr~ 84 (261)
.|+.+.+.+...+.+........ .+++......+++... .............++||++++++.++.++++|+||||+
T Consensus 42 aa~~av~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tTl~~~v~~~~~~~~~~iGD~~i 121 (212)
T PF13672_consen 42 AAQLAVETFINYLKKLLSQESPSSIEALIRAIKKEILSIVRAFQSAKQADLELRDYGTTLLALVIDPDKVYIFNIGDSRI 121 (212)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHH----HHHHHSGGGTT-EE-EEEEEEETTEEEEEEESS-EE
T ss_pred HHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccCceEEEEEEECCEEEEEEECCCeE
Confidence 34555555555454444433322 3344444444444321 00000013345578999999999999999999999999
Q ss_pred EE-EeCCcccccCCCCCCCcHHHHHHHHHhCCeEEeccccCceeccccccchhhhhcCCCCccCCeeeeCCceEEEEecC
Q 024852 85 VL-SRKGQALNLSKDHKPDLEVEKDRILKAGGFIQVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCD 163 (261)
Q Consensus 85 ~l-~r~~~~~~lt~dH~~~~~~e~~ri~~~~~~~~~~r~~~~~~ltrslGd~~~k~~~~~~~~~~~v~~~p~i~~~~l~~ 163 (261)
|+ .+++++..++.+|+.. .. ..++.+.... .....++..+++.+
T Consensus 122 ~~~~~~g~~~~l~~~~~~~----~~------------------~~~~~~~~~~-------------~~~~~~~~~~~~~~ 166 (212)
T PF13672_consen 122 YVIRRNGEIQQLTDDHSGE----YP------------------NQTRSLTGDD-------------PEPDVQYGSIPLEE 166 (212)
T ss_dssp EEEEETTEEEE-S---BHH----HH------------------HCTTSCCHHC-------------CCTETEEEEEE--T
T ss_pred EEEECCCEEEEcCCCccch----hh------------------hhhhccCccc-------------cccCCeEEEEEcCC
Confidence 75 5899999999999621 10 1133444332 02234667788889
Q ss_pred CCeEEEEEcCCccCCCCHHH-HHHHHHhhhc
Q 024852 164 DDEFLVIACDGIWDCLSSQE-LVDFVRDQLT 193 (261)
Q Consensus 164 ~d~~lvL~SDGl~d~l~~~e-i~~iv~~~~~ 193 (261)
+| .|+|||||||+.+...+ +..++.+.+.
T Consensus 167 ~d-~ilL~SDG~~~~l~~~~~~~~~l~~~~~ 196 (212)
T PF13672_consen 167 GD-VILLCSDGVWDNLRSYEDLEQFLKDLWN 196 (212)
T ss_dssp T--EEEEE-HHHHTTS-HHHHHHHH------
T ss_pred CC-EEEEECcCccccCCCHHHHHHHhhhccc
Confidence 99 55599999999998655 6677766443
No 17
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=99.38 E-value=1.5e-11 Score=121.81 Aligned_cols=123 Identities=20% Similarity=0.321 Sum_probs=94.7
Q ss_pred CCCceEEEEEEE--CCeEEEEEeccccEEEEeCCcccccCCCCCCCcHHHHHHHHHhCCeEEeccccCceeccccccchh
Q 024852 59 TSGSTACVAIIR--DKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQVGRVNGSLNLARAIGDVE 136 (261)
Q Consensus 59 ~~GtT~~v~~i~--~~~l~vanvGDSr~~l~r~~~~~~lt~dH~~~~~~e~~ri~~~~~~~~~~r~~~~~~ltrslGd~~ 136 (261)
.+.+|+.+++++ .+++.++|+|+++.|+.|++++.+++..+.| +|-..
T Consensus 634 ~~faTl~l~~IDl~~g~~~~~~aG~~p~~i~r~~~v~~i~s~~lP------------------------------lGil~ 683 (764)
T TIGR02865 634 EKFSTLDLSVIDLYTGQAEFVKVGAVPSFIKRGAKVEVIRSSNLP------------------------------IGILD 683 (764)
T ss_pred CeEEEEEEEEEECCCCeEEEEecCCCceEEEECCEEEEecCCCce------------------------------eEecc
Confidence 468999999986 7899999999999999999988887654322 33322
Q ss_pred hhhcCCCCccCCeeeeCCceEEEEecCCCeEEEEEcCCccCCCCHHH-----HHHHHHhhhcCCCCHHHHHHHHHHHhhc
Q 024852 137 FKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQE-----LVDFVRDQLTNETKLSVICEKVFDRCLA 211 (261)
Q Consensus 137 ~k~~~~~~~~~~~v~~~p~i~~~~l~~~d~~lvL~SDGl~d~l~~~e-----i~~iv~~~~~~~~~~~~~a~~l~~~a~~ 211 (261)
..+++....++.+|| +|||+|||+||..++.+ +.+++.+. ...+++++++.|++.+..
T Consensus 684 --------------~~~~~~~~~~L~~GD-~Lll~SDGv~E~~~~~~~~~~~l~~~l~~~--~~~~p~ela~~Il~~a~~ 746 (764)
T TIGR02865 684 --------------EVDVELVRKKLKNGD-LIVMVSDGVLEGEKEVEGKVLWLVRKLKET--NTNDPEEIAEYLLEKAKE 746 (764)
T ss_pred --------------CCccceEEEEeCCCC-EEEEECCCCCcCCcccccHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHH
Confidence 345677889999999 67799999999886533 56666542 235799999999999876
Q ss_pred CCCCCCCCCCeeEEEEEc
Q 024852 212 PSAGGEGCDNMTMILVQF 229 (261)
Q Consensus 212 ~~~~~g~~DNiTvivv~~ 229 (261)
... +...||+|++++++
T Consensus 747 ~~~-~~~~DD~Tvlvirv 763 (764)
T TIGR02865 747 LRS-GKIKDDMTVIVAKV 763 (764)
T ss_pred hcC-CCCCCCeEEEEEEe
Confidence 432 34689999999986
No 18
>PF07228 SpoIIE: Stage II sporulation protein E (SpoIIE); InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 3KE6_B 3ZT9_A 3RNR_A 3EQ2_A 3F7A_B 3F79_A 3ES2_B 3PU9_B 3T91_B 3T9Q_B ....
Probab=99.37 E-value=3.9e-11 Score=99.43 Aligned_cols=169 Identities=20% Similarity=0.261 Sum_probs=103.1
Q ss_pred cccchHHHHHHhhcchhhhcCCCCCccHHHHHHHHHHhHHHHhhhcCCCCCCCCCCCCceEEEEEEE--CCeEEEEEecc
Q 024852 4 KQHGFLRYLINRLLIPFRKVKQKPTDSLDKWAYHYMSDFFFVAFLEGPHSDFHGPTSGSTACVAIIR--DKQLVVANAGD 81 (261)
Q Consensus 4 ~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GtT~~v~~i~--~~~l~vanvGD 81 (261)
|+|.-|..++..+...++.+.....+ .. +....+.+.+...... ....+|+++++++ .++++++|+|+
T Consensus 14 GhG~~aa~~~~~~~~~~~~~~~~~~~-p~-~~l~~ln~~l~~~~~~--------~~~~~t~~~~~~d~~~~~l~~~~aG~ 83 (193)
T PF07228_consen 14 GHGVSAALLSAALASAIRELLDEGLD-PE-ELLEALNRRLYRDLKG--------DNRYATACYAIIDPETGTLTYANAGH 83 (193)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHTTTS-HH-HHHHHHHHHHHHHTTT--------TSTTEEEEEEEEETTTTEEEEEEESS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcCCC-HH-HHHHHHHHHHHHHhhh--------ccccceEEEEEecccceEEEEeCCCC
Confidence 44445555555555555544433322 12 2233333333222211 1478889888877 67899999999
Q ss_pred ccEEEEeCCc--ccccCCCCCCCcHHHHHHHHHhCCeEEeccccCceeccccccchhhhhcCCCCccCCeeeeCCceEEE
Q 024852 82 SRCVLSRKGQ--ALNLSKDHKPDLEVEKDRILKAGGFIQVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTI 159 (261)
Q Consensus 82 Sr~~l~r~~~--~~~lt~dH~~~~~~e~~ri~~~~~~~~~~r~~~~~~ltrslGd~~~k~~~~~~~~~~~v~~~p~i~~~ 159 (261)
++++++++++ ...+..... .+|-.. ...+....+
T Consensus 84 ~~~l~~~~~~~~~~~~~~~~~------------------------------~lG~~~--------------~~~~~~~~~ 119 (193)
T PF07228_consen 84 PPPLLLRPGGREIEQLESEGP------------------------------PLGIFE--------------DIDYQEQEI 119 (193)
T ss_dssp SEEEEEETTCTEEEEETCSSB------------------------------BCSSSC--------------TTCEEEEEE
T ss_pred CCEEEEeccccceeecccCcc------------------------------ceeeec--------------cccccceEE
Confidence 9999999843 322222111 144433 234556779
Q ss_pred EecCCCeEEEEEcCCccCCCCHH-------HHHHHHHhhhcCCCCHHHHHHHHHHHhhcCCCCCCCCCCeeEEEEEcC
Q 024852 160 ELCDDDEFLVIACDGIWDCLSSQ-------ELVDFVRDQLTNETKLSVICEKVFDRCLAPSAGGEGCDNMTMILVQFK 230 (261)
Q Consensus 160 ~l~~~d~~lvL~SDGl~d~l~~~-------ei~~iv~~~~~~~~~~~~~a~~l~~~a~~~~~~~g~~DNiTvivv~~~ 230 (261)
++.+|| .|+|+||||+|....+ .+.+++.+. ...+++++++.+++.+.. ...+...||+||+++++.
T Consensus 120 ~l~~gd-~l~l~TDGl~e~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~l~~~~~~-~~~~~~~DD~tvl~~~~~ 193 (193)
T PF07228_consen 120 QLEPGD-RLLLYTDGLFEALNEDGEFFGEERLLELLDEN--RGLSPQEIIDALLEAIDR-FGKGPLRDDITVLVIRRQ 193 (193)
T ss_dssp E--TTE-EEEEECHHHCTTTCHHCHHCCCHHHHHHHHCH--TTS-HHHHHHHHHHHHHH-HTTSSTSS-EEEEEEEE-
T ss_pred Eecccc-EEEEeCCChhhccCCccchhHHHHHHHHHhhc--cCCCHHHHHHHHHHHHHH-hcCCCCCCceEEEEEEEC
Confidence 999999 5669999999998543 345555543 346799999999998776 112578899999999874
No 19
>COG2208 RsbU Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription]
Probab=98.33 E-value=3.2e-05 Score=70.91 Aligned_cols=124 Identities=17% Similarity=0.269 Sum_probs=94.5
Q ss_pred CCceEEEEEEE--CCeEEEEEeccccEEEEeCCccc---ccCCCCCCCcHHHHHHHHHhCCeEEeccccCceeccccccc
Q 024852 60 SGSTACVAIIR--DKQLVVANAGDSRCVLSRKGQAL---NLSKDHKPDLEVEKDRILKAGGFIQVGRVNGSLNLARAIGD 134 (261)
Q Consensus 60 ~GtT~~v~~i~--~~~l~vanvGDSr~~l~r~~~~~---~lt~dH~~~~~~e~~ri~~~~~~~~~~r~~~~~~ltrslGd 134 (261)
+-+|+..++++ .+.+.++|+|---+++++.++-. .+. .....+|-
T Consensus 231 ~f~T~~~~~~d~~~~~l~y~~aGH~p~~i~~~~~~~~~~~l~------------------------------~~g~piG~ 280 (367)
T COG2208 231 MFVTLFLGVYDLDSGELTYSNAGHEPALILSADGEIEVEDLT------------------------------ALGLPIGL 280 (367)
T ss_pred cEEEEEEEEEeccCCEEEEeeCCCCCeeEEEcCCCceeEEcc------------------------------CCCceeee
Confidence 77888888876 78999999999999999876432 221 34456676
Q ss_pred hhhhhcCCCCccCCeeeeCCceEEEEecCCCeEEEEEcCCccC-------CCCHHHHHHHHHhhhcCCCCHHHHHHHHHH
Q 024852 135 VEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWD-------CLSSQELVDFVRDQLTNETKLSVICEKVFD 207 (261)
Q Consensus 135 ~~~k~~~~~~~~~~~v~~~p~i~~~~l~~~d~~lvL~SDGl~d-------~l~~~ei~~iv~~~~~~~~~~~~~a~~l~~ 207 (261)
.. ...+.+...++++|| .||+-|||+.+ .+..+....++.+. ...+++++++.+.+
T Consensus 281 ~~--------------~~~~~~~~~~l~~gd-~lvl~tDGv~Ea~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~~i~~ 343 (367)
T COG2208 281 LP--------------DYQYEVASLQLEPGD-LLVLYTDGVTEARNSDGEFFGLERLLKILGRL--LGQPAEEILEAILE 343 (367)
T ss_pred cC--------------CccchheeEEecCCC-EEEEEcCCeeeeecCCccEecHHHHHHHHHHH--hCCCHHHHHHHHHH
Confidence 65 566778889999999 77799999999 66777888888752 24678889888888
Q ss_pred HhhcCCCCCCCCCCeeEEEEEcC
Q 024852 208 RCLAPSAGGEGCDNMTMILVQFK 230 (261)
Q Consensus 208 ~a~~~~~~~g~~DNiTvivv~~~ 230 (261)
....-.......||+|++++++.
T Consensus 344 ~l~~~~~~~~~~DDiTll~lk~~ 366 (367)
T COG2208 344 SLEELQGDQIQDDDITLLVLKVK 366 (367)
T ss_pred HHHHhhCCccccCceEEEEEEec
Confidence 76553333556688999999975
No 20
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=72.57 E-value=13 Score=30.84 Aligned_cols=46 Identities=17% Similarity=0.309 Sum_probs=37.0
Q ss_pred CeEEEEEcCCcc-----------CCCCHHHHHHHHHhhhcCCCCHHHHHHHHHHHhhc
Q 024852 165 DEFLVIACDGIW-----------DCLSSQELVDFVRDQLTNETKLSVICEKVFDRCLA 211 (261)
Q Consensus 165 d~~lvL~SDGl~-----------d~l~~~ei~~iv~~~~~~~~~~~~~a~~l~~~a~~ 211 (261)
| -+++.|.|+| |+|.++...+.+....+..+-|+++|.+|++.-..
T Consensus 72 D-TvLFsSp~F~~Gk~~~sPgs~DyLknq~FW~~vn~g~D~~SIPKevA~qLI~MHq~ 128 (237)
T COG3700 72 D-TVLFSSPGFWRGKKYFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQLIDMHQR 128 (237)
T ss_pred C-eeEecccccccCccccCCChHHhhcCHHHHHHHhcCCccccchHHHHHHHHHHHHh
Confidence 5 3448888777 57888888888888777778899999999998666
No 21
>PF09436 DUF2016: Domain of unknown function (DUF2016); InterPro: IPR018560 This entry represents the N-terminal of proteins that contain a ubiquitin domain.
Probab=49.32 E-value=11 Score=26.27 Aligned_cols=22 Identities=18% Similarity=0.335 Sum_probs=15.2
Q ss_pred Eec-CCCeEEEEEcCCccCCCCHH
Q 024852 160 ELC-DDDEFLVIACDGIWDCLSSQ 182 (261)
Q Consensus 160 ~l~-~~d~~lvL~SDGl~d~l~~~ 182 (261)
++. .|.++| +++||+|=.+...
T Consensus 22 ~l~~~G~Rll-va~nGv~lEv~r~ 44 (72)
T PF09436_consen 22 PLERPGHRLL-VASNGVFLEVRRP 44 (72)
T ss_pred ccccCCcEEE-EecCcEEEEEech
Confidence 444 677655 9999999655443
No 22
>PRK06369 nac nascent polypeptide-associated complex protein; Reviewed
Probab=44.56 E-value=1.4e+02 Score=22.74 Aligned_cols=56 Identities=7% Similarity=0.149 Sum_probs=40.6
Q ss_pred eeeeCCceEEEEecCCCeEEEEEcCCccC-------CCCHHHHHHHHHhhhcCCCCHHHHHHHHHH
Q 024852 149 IVTANPDISTIELCDDDEFLVIACDGIWD-------CLSSQELVDFVRDQLTNETKLSVICEKVFD 207 (261)
Q Consensus 149 ~v~~~p~i~~~~l~~~d~~lvL~SDGl~d-------~l~~~ei~~iv~~~~~~~~~~~~~a~~l~~ 207 (261)
.|...|++..++....+.|.|++..-.-+ .+++++|.-+..+. +-+-.++-+.|.+
T Consensus 38 ~Vi~~P~V~~m~~~g~~tY~I~Ge~~~e~~~~~~~~~i~~edI~lv~~q~---gvs~~~A~~AL~~ 100 (115)
T PRK06369 38 IVFENPQVTVMDAQGQKTYQIVGEPEEVEKEAEKEVEIPEEDIELVAEQT---GVSEEEARKALEE 100 (115)
T ss_pred EEEcCCeEEEEecCCCcEEEEEeccEEeeccccccCCCCHHHHHHHHHHH---CcCHHHHHHHHHH
Confidence 47889999999998889899998877754 47888887776653 3445555444443
No 23
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=36.17 E-value=69 Score=17.39 Aligned_cols=22 Identities=32% Similarity=0.468 Sum_probs=17.2
Q ss_pred EEEEECCeEEEEEeccccEEEE
Q 024852 66 VAIIRDKQLVVANAGDSRCVLS 87 (261)
Q Consensus 66 v~~i~~~~l~vanvGDSr~~l~ 87 (261)
+++-.++.+||+-.|..|+..+
T Consensus 7 vav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 7 VAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEETTSEEEEEECCCTEEEEE
T ss_pred EEEeCCCCEEEEECCCCEEEEC
Confidence 3444789999999999998764
No 24
>COG2168 DsrH Uncharacterized conserved protein involved in oxidation of intracellular sulfur [Inorganic ion transport and metabolism]
Probab=35.23 E-value=27 Score=25.68 Aligned_cols=31 Identities=23% Similarity=0.445 Sum_probs=24.3
Q ss_pred EEecCCCeEEEEEcCCccCCCCHHHHHHHHHh
Q 024852 159 IELCDDDEFLVIACDGIWDCLSSQELVDFVRD 190 (261)
Q Consensus 159 ~~l~~~d~~lvL~SDGl~d~l~~~ei~~iv~~ 190 (261)
.-++++|.++ |+.|||+-.+...+..+-+..
T Consensus 20 ~~l~~~D~vl-L~qdGV~aAl~~~~~~~sl~~ 50 (96)
T COG2168 20 RLLTEGDAVL-LLQDGVYAALKGNRYLASLRE 50 (96)
T ss_pred HHhcccCeEE-EEcccchhhhcCcHHHHHHhc
Confidence 4467889655 999999999988877776655
No 25
>PF05785 CNF1: Rho-activating domain of cytotoxic necrotizing factor; InterPro: IPR008430 This entry represents several bacterial cytotoxic necrotizing factor proteins as well as related dermonecrotic toxin (DNT) from Bordetella species. Cytotoxic necrotizing factor 1 (CNF1) is a toxin whose structure from Escherichia coli revealed a 4-layer alpha/beta/beta/alpha structure containing mixed beta-sheets []. CNF1 is expressed in strains of E. coli causing uropathogenic and neonatal meningitis. CNF1 alters host cell actin cytoskeleton and promotes bacterial invasion of the blood-brain barrier endothelial cells []. CNF1 belongs to a unique group of large cytotoxins that cause constitutive activation of Rho guanosine triphosphatases (GTPases), which are key regulators of the actin cytoskeleton []. Bordetella dermonecrotic toxin (DNT) stimulates the assembly of actin stress fibres and focal adhesions by deamidating or polyaminating Gln63 of the small GTPase Rho. DNT is an A-B toxin composed of an N-terminal receptor-binding (B) domain and a C-terminal enzymatically active (A) domain [].; PDB: 1HZG_A 1HQ0_A.
Probab=34.30 E-value=54 Score=28.96 Aligned_cols=25 Identities=32% Similarity=0.408 Sum_probs=19.5
Q ss_pred CCCCCceEEEEEEECCeEEEEEeccc
Q 024852 57 GPTSGSTACVAIIRDKQLVVANAGDS 82 (261)
Q Consensus 57 ~~~~GtT~~v~~i~~~~l~vanvGDS 82 (261)
+..+|||.+++ +.++.+|..|+|-+
T Consensus 129 G~LSGCT~i~A-~K~~~~y~~HtGk~ 153 (281)
T PF05785_consen 129 GALSGCTMIYA-RKDNYFYAYHTGKS 153 (281)
T ss_dssp --BSS-EEEEE-EETTEEEEEEEEES
T ss_pred CccCCCEEEEE-EcCCeEEEEEcCCC
Confidence 45699999888 67889999999977
No 26
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=29.55 E-value=99 Score=20.61 Aligned_cols=27 Identities=7% Similarity=0.255 Sum_probs=22.7
Q ss_pred CCHHHHHHHHHhhhcCCCCHHHHHHHHHHH
Q 024852 179 LSSQELVDFVRDQLTNETKLSVICEKVFDR 208 (261)
Q Consensus 179 l~~~ei~~iv~~~~~~~~~~~~~a~~l~~~ 208 (261)
-+++||..++... +.+|.+++++|+.+
T Consensus 19 hse~eIya~L~ec---nMDpnea~qrLL~q 45 (60)
T PF06972_consen 19 HSEEEIYAMLKEC---NMDPNEAVQRLLSQ 45 (60)
T ss_pred CCHHHHHHHHHHh---CCCHHHHHHHHHhc
Confidence 5889999999886 57899999999873
No 27
>PRK03072 heat shock protein HtpX; Provisional
Probab=24.33 E-value=1.2e+02 Score=26.82 Aligned_cols=26 Identities=27% Similarity=0.392 Sum_probs=22.1
Q ss_pred EEEEEcCCccCCCCHHHHHHHHHhhh
Q 024852 167 FLVIACDGIWDCLSSQELVDFVRDQL 192 (261)
Q Consensus 167 ~lvL~SDGl~d~l~~~ei~~iv~~~~ 192 (261)
.+|..|||+.+.++++|+..++..++
T Consensus 110 ~~v~vt~gLl~~l~~~El~aVlAHEl 135 (288)
T PRK03072 110 AAVCCTEGILQILNERELRGVLGHEL 135 (288)
T ss_pred cEEEecHHHHHhCCHHHHHHHHHHHH
Confidence 45688999999999999999997743
No 28
>PRK05457 heat shock protein HtpX; Provisional
Probab=23.81 E-value=1.7e+02 Score=25.81 Aligned_cols=38 Identities=13% Similarity=0.229 Sum_probs=27.7
Q ss_pred CceEEEEecCCCeEEEEEcCCccCCCCHHHHHHHHHhhh
Q 024852 154 PDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQL 192 (261)
Q Consensus 154 p~i~~~~l~~~d~~lvL~SDGl~d~l~~~ei~~iv~~~~ 192 (261)
|.-...-..... -+|+.|+|+.+.++++|+..++..++
T Consensus 105 ~NAfa~G~~~~~-~~V~vt~gLl~~L~~~El~aVlAHEl 142 (284)
T PRK05457 105 INAFATGASKNN-SLVAVSTGLLQNMSRDEVEAVLAHEI 142 (284)
T ss_pred ceEEEecCCCCC-eEEEeehHHhhhCCHHHHHHHHHHHH
Confidence 333334444445 46699999999999999999998744
No 29
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=23.44 E-value=1.7e+02 Score=26.03 Aligned_cols=89 Identities=15% Similarity=0.106 Sum_probs=49.9
Q ss_pred cccEEEEeCCc-ccccCCCCCCCcHHHHHHHHHhCCeEEeccccCceecccccc-chhhhhcCCCCccCCeeeeCCceEE
Q 024852 81 DSRCVLSRKGQ-ALNLSKDHKPDLEVEKDRILKAGGFIQVGRVNGSLNLARAIG-DVEFKLNKSLPAEKQIVTANPDIST 158 (261)
Q Consensus 81 DSr~~l~r~~~-~~~lt~dH~~~~~~e~~ri~~~~~~~~~~r~~~~~~ltrslG-d~~~k~~~~~~~~~~~v~~~p~i~~ 158 (261)
|||+|.+.+.. +...-.||+.......+.+...++.....++ .+.-.|= +.+.+ . +..
T Consensus 104 DTRayRl~~~~~~~vfEvD~Pevi~~K~~~l~e~~~~~~~~~~----~Va~Dl~~~dw~~-------------~---L~~ 163 (297)
T COG3315 104 DTRAYRLDWPKGTRVFEVDLPEVIEFKKKLLAERGATPPAHRR----LVAVDLREDDWPQ-------------A---LAA 163 (297)
T ss_pred ccceeecCCCCCCeEEECCCcHHHHHHHHHhhhcCCCCCceEE----EEeccccccchHH-------------H---HHh
Confidence 99999998885 8888999987665555555554533221111 2222222 11100 0 000
Q ss_pred EEecCCCeEEEEEcCCccCCCCHHHHHHHHHh
Q 024852 159 IELCDDDEFLVIACDGIWDCLSSQELVDFVRD 190 (261)
Q Consensus 159 ~~l~~~d~~lvL~SDGl~d~l~~~ei~~iv~~ 190 (261)
.-+...-..+ +-.-||.-||+.+++.+++..
T Consensus 164 ~G~d~~~pt~-~iaEGLl~YL~~~~v~~ll~~ 194 (297)
T COG3315 164 AGFDRSRPTL-WIAEGLLMYLPEEAVDRLLSR 194 (297)
T ss_pred cCCCcCCCeE-EEeccccccCCHHHHHHHHHH
Confidence 0001112233 566899999999999888765
No 30
>COG4669 EscJ Type III secretory pathway, lipoprotein EscJ [Intracellular trafficking and secretion]
Probab=23.02 E-value=1.1e+02 Score=26.49 Aligned_cols=36 Identities=14% Similarity=0.327 Sum_probs=26.0
Q ss_pred HHHHHHHhhcCCCCCCCCCCeeEEEEEcCCCCCCCCCCCC
Q 024852 202 CEKVFDRCLAPSAGGEGCDNMTMILVQFKNASNNGPSAAE 241 (261)
Q Consensus 202 a~~l~~~a~~~~~~~g~~DNiTvivv~~~~~~~~~~~~~~ 241 (261)
.+.|+..+.. +-..|||||+++.-.......+++.-
T Consensus 167 IK~LV~nSv~----gL~YenISVVl~~~~~~~~~~~~~~~ 202 (246)
T COG4669 167 IKRLVANSVP----GLQYENISVVLVPASDSDPAIPGPRA 202 (246)
T ss_pred HHHHHHhccC----CCchhceEEEEeecccccccccCccc
Confidence 4566666676 78899999999988776555544443
No 31
>COG1539 FolB Dihydroneopterin aldolase [Coenzyme metabolism]
Probab=22.47 E-value=3.6e+02 Score=20.58 Aligned_cols=59 Identities=15% Similarity=0.315 Sum_probs=44.8
Q ss_pred EEcCCccCCCCHHHHHHHHHhhhcCC--CCHHHHHHHHHHHhhcCCCCCCCCCCeeEEEEEcCCCCC
Q 024852 170 IACDGIWDCLSSQELVDFVRDQLTNE--TKLSVICEKVFDRCLAPSAGGEGCDNMTMILVQFKNASN 234 (261)
Q Consensus 170 L~SDGl~d~l~~~ei~~iv~~~~~~~--~~~~~~a~~l~~~a~~~~~~~g~~DNiTvivv~~~~~~~ 234 (261)
..||=+-|.++-.++.+.+.+..... .-++.+|+.+.+..+. ....++.+=+.+.++..
T Consensus 43 ~~~Ddl~dtl~Y~~v~~~i~~~v~~~~~~LiE~lA~~ia~~l~~------~~~~v~~~~v~v~KP~a 103 (121)
T COG1539 43 AESDDLADTLNYAEVSELIKEIVEGKRFALIETLAEEIADLLLA------RFPRVELVEVKVTKPKA 103 (121)
T ss_pred cCccchhheecHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHh------hCCccEEEEEEEECCCC
Confidence 56788889999999999988876543 3577888888887776 22778888788876533
No 32
>PRK03982 heat shock protein HtpX; Provisional
Probab=22.34 E-value=1.1e+02 Score=26.97 Aligned_cols=34 Identities=21% Similarity=0.313 Sum_probs=25.0
Q ss_pred EEEecCCCeEEEEEcCCccCCCCHHHHHHHHHhhh
Q 024852 158 TIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQL 192 (261)
Q Consensus 158 ~~~l~~~d~~lvL~SDGl~d~l~~~ei~~iv~~~~ 192 (261)
..-..+.+. .|..|||+.+.++++|+..++..++
T Consensus 100 a~G~~~~~~-~V~vt~gLl~~l~~~El~AVlAHEl 133 (288)
T PRK03982 100 ATGRDPKHA-VVAVTEGILNLLNEDELEGVIAHEL 133 (288)
T ss_pred EeccCCCCe-EEEeehHHHhhCCHHHHHHHHHHHH
Confidence 333334453 4478999999999999999987643
No 33
>cd00534 DHNA_DHNTPE Dihydroneopterin aldolase (DHNA) and 7,8-dihydroneopterin triphosphate epimerase domain (DHNTPE); these enzymes have been designated folB and folX, respectively. Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is DHNA which catalyses the conversion of 7,8-dihydroneopterin to 6-hydroxymethyl-7,8-dihydropterin in the biosynthetic pathway of tetrahydrofolate. Though it is known that DHNTPE catalyzes the epimerization of dihydroneopterin triphosphate to dihydromonapterin triphosphate, the biological role of this enzyme is still unclear. It is hypothesized that it is not an essential protein since a folX knockout in E. coli has a normal phenoty
Probab=22.21 E-value=2.7e+02 Score=20.69 Aligned_cols=57 Identities=16% Similarity=0.278 Sum_probs=40.9
Q ss_pred EEcCCccCCCCHHHHHHHHHhhhcCC--CCHHHHHHHHHHHhhcCCCCCCCCCCeeEEEEEcCCC
Q 024852 170 IACDGIWDCLSSQELVDFVRDQLTNE--TKLSVICEKVFDRCLAPSAGGEGCDNMTMILVQFKNA 232 (261)
Q Consensus 170 L~SDGl~d~l~~~ei~~iv~~~~~~~--~~~~~~a~~l~~~a~~~~~~~g~~DNiTvivv~~~~~ 232 (261)
-.||-+-+.++-..+.+.+....... ..++.+|..|.+.++. . .+.+.-+-+++.++
T Consensus 42 ~~~D~l~~tidY~~l~~~i~~~~~~~~~~llE~La~~ia~~i~~----~--~~~v~~v~v~v~K~ 100 (118)
T cd00534 42 GESDDLADTLNYAEVAKLIKKIVEGSPFKLIETLAEEIADILLE----D--YPKVSAIKVKVEKP 100 (118)
T ss_pred hccCChhhccCHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHH----h--CCCceEEEEEEECC
Confidence 46788888999999999887765433 3678889999888877 2 24455555666654
No 34
>PF07335 Glyco_hydro_75: Fungal chitosanase of glycosyl hydrolase group 75; InterPro: IPR009939 This family consists of chitosanase proteins. Chitin, xylan, 6-O-sulphated chitosan and O-carboxymethyl chitin are indigestible by chitosanase [].
Probab=21.18 E-value=1.2e+02 Score=24.39 Aligned_cols=22 Identities=36% Similarity=0.542 Sum_probs=16.5
Q ss_pred CCCceEEEEEEECCeEEEEEeccc
Q 024852 59 TSGSTACVAIIRDKQLVVANAGDS 82 (261)
Q Consensus 59 ~~GtT~~v~~i~~~~l~vanvGDS 82 (261)
..|+-++| +++++++++-+||+
T Consensus 64 ~~gsv~aV--v~~~k~~y~I~GDt 85 (156)
T PF07335_consen 64 KPGSVAAV--VCNGKVVYAIVGDT 85 (156)
T ss_pred CCCcEEEE--EECCEEEEEEEecc
Confidence 45554444 45999999999998
No 35
>PRK02391 heat shock protein HtpX; Provisional
Probab=20.89 E-value=1e+02 Score=27.37 Aligned_cols=30 Identities=20% Similarity=0.313 Sum_probs=23.6
Q ss_pred cCCCeEEEEEcCCccCCCCHHHHHHHHHhhh
Q 024852 162 CDDDEFLVIACDGIWDCLSSQELVDFVRDQL 192 (261)
Q Consensus 162 ~~~d~~lvL~SDGl~d~l~~~ei~~iv~~~~ 192 (261)
.+.. -+|+.|||+.+.++++|+..++..++
T Consensus 112 ~~~~-~~V~vt~gLl~~L~~~El~aVlaHEl 141 (296)
T PRK02391 112 SPKN-AVVCVTTGLMRRLDPDELEAVLAHEL 141 (296)
T ss_pred CCCC-cEEEecHHHHhhCCHHHHHHHHHHHH
Confidence 3344 34589999999999999999987643
No 36
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=20.60 E-value=1.4e+02 Score=17.11 Aligned_cols=19 Identities=21% Similarity=0.354 Sum_probs=15.2
Q ss_pred CCeEEEEEeccccEEEEeC
Q 024852 71 DKQLVVANAGDSRCVLSRK 89 (261)
Q Consensus 71 ~~~l~vanvGDSr~~l~r~ 89 (261)
++.||++|-|+-.+.++.-
T Consensus 3 ~~~lyv~~~~~~~v~~id~ 21 (42)
T TIGR02276 3 GTKLYVTNSGSNTVSVIDT 21 (42)
T ss_pred CCEEEEEeCCCCEEEEEEC
Confidence 5678999998888888753
Done!