Query Summary

Your job contains 1 sequence.

Parameters

Threshold: 0.001

Maximum number of alignments shown: 100

BLAST filter: on

Query Sequence

>024853
MTFGGRGETLTSISKQYGVSVYSIAAVNKNIVDVDLVFEGQRLNIPSSVREELQATVKNV
ISSFDLKEIHRRSLNVFYGRLDKRHISMQITHRLPHIWRNRLPSFDLKETLQHSLNIFYG
PLDKKYFVMEITHGLPQAKTTGYFLVVVPLIAFCIRCMIGAFHTRIAGGSGHRVANGSKG
RHPGSKSVRWKSALRDIIEEDLDSGSRPRTNDPVEEQDQAQPLISFEESSHAYRKLEDDY
EKFLSECGMSKWGYWRGGSPE

High Scoring Gene Products

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  024853
        (261 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2140603 - symbol:AT4G09970 species:3702 "Arabi...   144  5.2e-11   2


>TAIR|locus:2140603 [details] [associations]
            symbol:AT4G09970 species:3702 "Arabidopsis thaliana"
            [GO:0005634 "nucleus" evidence=ISM] [GO:0007623 "circadian rhythm"
            evidence=IEP] EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0007623
            UniGene:At.33660 UniGene:At.69911 EMBL:BT015050 EMBL:BT020543
            IPI:IPI00528686 RefSeq:NP_192735.2 ProteinModelPortal:Q6DBH2
            EnsemblPlants:AT4G09970.1 GeneID:826588 KEGG:ath:AT4G09970
            TAIR:At4g09970 eggNOG:NOG316646 HOGENOM:HOG000131612
            InParanoid:Q6DBH2 OMA:RVELEYK PhylomeDB:Q6DBH2
            ProtClustDB:CLSN2720497 ArrayExpress:Q6DBH2 Genevestigator:Q6DBH2
            Uniprot:Q6DBH2
        Length = 250

 Score = 144 (55.7 bits), Expect = 5.2e-11, Sum P(2) = 5.2e-11
 Identities = 37/117 (31%), Positives = 59/117 (50%)

Query:   135 LPQAKTTGYFLVVVPLIAFCIRCMIGAFHTRIAGGSGHRVANGSKGRHPGSKSVRWKSAL 194
             LP   T      ++P++ FCI C+IG  HT I+  +       S+G H GS+  RW++AL
Sbjct:   143 LPHLNTGVLLTSLLPVLGFCIICIIGTLHTIISRKT-------SQGHHHGSE--RWRTAL 193

Query:   195 RDIIEEDLDSGSRPRTNDPVEEQDQAQPLISFEESSHAYRKLEDDYEKFLSECGMSK 251
              D   E L S      +         Q   + +E + AY ++E +Y++FL ECG+ +
Sbjct:   194 MDW-NEPLASDGHDSMSPEYRVASTNQEATATDEMNEAYSRVELEYKRFLLECGVGE 249

 Score = 59 (25.8 bits), Expect = 5.2e-11, Sum P(2) = 5.2e-11
 Identities = 28/93 (30%), Positives = 46/93 (49%)

Query:     6 RGETLTSISKQYGVSVYSIA-AVNKNIVDVDLVFEGQRLNIPSSVREELQATVKNVISSF 64
             R E+L  I KQYGVSV +   +   + +D DL  E +   + SSV ++  + +       
Sbjct:    60 RSESLRRILKQYGVSVENPEESKTSSRLD-DLDCEEKHDAVTSSVIDD-DSKMNTTEELP 117

Query:    65 DLKEIHRRSLNVFYGRLDKRHISMQITHRLPHI 97
             DL+ + + +  V  G  D  ++S Q    LPH+
Sbjct:   118 DLRRVEKYTETV--GTAD--NLSGQNHQILPHL 146


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.137   0.412    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      261       261   0.00090  114 3  11 22  0.46    33
                                                     32  0.49    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  606 (64 KB)
  Total size of DFA:  205 KB (2115 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  25.03u 0.09s 25.12t   Elapsed:  00:00:01
  Total cpu time:  25.03u 0.09s 25.12t   Elapsed:  00:00:01
  Start:  Sat May 11 04:31:50 2013   End:  Sat May 11 04:31:51 2013

Back to top