BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 024853
         (261 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2L9Y|A Chain A, Solution Structure Of The Mocvnh-Lysm Module From The Rice
           Blast Fungus Magnaporthe Oryzae Protein (Mgg_03307)
          Length = 167

 Score = 31.6 bits (70), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 1/42 (2%)

Query: 6   RGETLTSISKQYGVSVYSIAAVNKNIVDVDLVFEGQRLNIPS 47
           +G+TL  I +++    + IA  N NI + DL++ GQ L +P+
Sbjct: 69  QGDTLRDIGRRFDCDFHEIARRN-NIQNEDLIYPGQVLQVPT 109


>pdb|3OS6|A Chain A, Crystal Structure Of Putative
           2,3-Dihydroxybenzoate-Specific Isochorismate Synthase,
           Dhbc From Bacillus Anthracis.
 pdb|3OS6|B Chain B, Crystal Structure Of Putative
           2,3-Dihydroxybenzoate-Specific Isochorismate Synthase,
           Dhbc From Bacillus Anthracis.
 pdb|3OS6|C Chain C, Crystal Structure Of Putative
           2,3-Dihydroxybenzoate-Specific Isochorismate Synthase,
           Dhbc From Bacillus Anthracis.
 pdb|3OS6|D Chain D, Crystal Structure Of Putative
           2,3-Dihydroxybenzoate-Specific Isochorismate Synthase,
           Dhbc From Bacillus Anthracis
          Length = 399

 Score = 31.2 bits (69), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 12/22 (54%), Positives = 20/22 (90%)

Query: 204 SGSRPRTNDPVEEQDQAQPLIS 225
           +GSRPR++DPVE++ +A+ L+S
Sbjct: 213 AGSRPRSDDPVEDKRRAEELLS 234


>pdb|3KEO|A Chain A, Crystal Structure Of A Rex-Family Transcriptional
           Regulatory Protein From Streptococcus Agalactiae
           Complexed With Nad+
 pdb|3KEO|B Chain B, Crystal Structure Of A Rex-Family Transcriptional
           Regulatory Protein From Streptococcus Agalactiae
           Complexed With Nad+
 pdb|3KEQ|A Chain A, Crystal Structure Of A Rex-Family Transcriptional
           Regulatory Protein From Streptococcus Agalactiae
           Complexed With Nad+
 pdb|3KEQ|B Chain B, Crystal Structure Of A Rex-Family Transcriptional
           Regulatory Protein From Streptococcus Agalactiae
           Complexed With Nad+
 pdb|3KET|A Chain A, Crystal Structure Of A Rex-Family Transcriptional
           Regulatory Protein From Streptococcus Agalactiae Bound
           To A Palindromic Operator
          Length = 212

 Score = 30.4 bits (67), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 7/67 (10%)

Query: 1   MTFGGRGETLTSISKQYGVSVYSIAAVNKNIVDVDLVFEGQRLNIPSSVREE-----LQA 55
           M F      L   + + G+ VY I+ +N +++D D+  E   L +PS+  +E     ++A
Sbjct: 114 MAFDLDSNDLVGKTTEDGIPVYGISTINDHLIDSDI--ETAILTVPSTEAQEVADILVKA 171

Query: 56  TVKNVIS 62
            +K ++S
Sbjct: 172 GIKGILS 178


>pdb|1FX5|A Chain A, Crystal Structure Analysis Of Ulex Europaeus Lectin I
 pdb|1FX5|B Chain B, Crystal Structure Analysis Of Ulex Europaeus Lectin I
 pdb|1JXN|A Chain A, Crystal Structure Of The Lectin I From Ulex Europaeus In
           Complex With The Methyl Glycoside Of Alpha-l-fucose
 pdb|1JXN|B Chain B, Crystal Structure Of The Lectin I From Ulex Europaeus In
           Complex With The Methyl Glycoside Of Alpha-l-fucose
 pdb|1JXN|C Chain C, Crystal Structure Of The Lectin I From Ulex Europaeus In
           Complex With The Methyl Glycoside Of Alpha-l-fucose
 pdb|1JXN|D Chain D, Crystal Structure Of The Lectin I From Ulex Europaeus In
           Complex With The Methyl Glycoside Of Alpha-l-fucose
          Length = 242

 Score = 28.5 bits (62), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 2/66 (3%)

Query: 29  KNIVDVDLVFEGQRLNIPSSVREELQATVKNVISSFDLKEIHRRSLNVFYGRLDKRHISM 88
            N+ +V++++E     + +S+      T  +V S  DLKEI    ++V  G     +I  
Sbjct: 165 NNVANVEIIYEASSKTLTASLTYPSDQTSISVTSIVDLKEILPEWVSV--GFSGSTYIGR 222

Query: 89  QITHRL 94
           Q TH +
Sbjct: 223 QATHEV 228


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.137    0.412 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,262,575
Number of Sequences: 62578
Number of extensions: 340081
Number of successful extensions: 727
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 726
Number of HSP's gapped (non-prelim): 10
length of query: 261
length of database: 14,973,337
effective HSP length: 97
effective length of query: 164
effective length of database: 8,903,271
effective search space: 1460136444
effective search space used: 1460136444
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)