BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024853
(261 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O32062|SAFA_BACSU SpoIVD-associated factor A OS=Bacillus subtilis (strain 168)
GN=safA PE=1 SV=1
Length = 387
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 56/122 (45%), Gaps = 17/122 (13%)
Query: 6 RGETLTSISKQYGVSVYSIAAVNKNIVDVDLVFEGQRLNIPS---SVREELQATVKNVIS 62
+G++L I+++YGV V + +N + + DL+ G ++ +PS VR+E +A
Sbjct: 8 KGDSLWKIAEKYGVDVEEVKKLNTQLSNPDLIMPGMKIKVPSEGVPVRKEPKAGKSPAAG 67
Query: 63 SFDLKEIHRRSLNVFYGRLD------KRHISMQITHRLPHIWRNRLPS------FDLKET 110
S +K+ H + +D K SM +P++ N P +D+K+
Sbjct: 68 S--VKQEHPYAKEKPKSVVDVEDTKPKEKKSMPYVPPMPNLQENVYPEADVNDYYDMKQL 125
Query: 111 LQ 112
Q
Sbjct: 126 FQ 127
>sp|Q6B4J5|EXSA_BACCE Spore coat assembly protein ExsA OS=Bacillus cereus GN=exsA PE=2
SV=1
Length = 643
Score = 36.6 bits (83), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 6 RGETLTSISKQYGVSVYSIAAVNKNIVDVDLVFEGQRLNIPS-SVREELQATVKNVISSF 64
+G+TL I+K+YGV ++ N + + DL+ G ++ +PS SV + QA +
Sbjct: 8 KGDTLWKIAKKYGVDFDTLKKTNTQLSNPDLIMPGMKIKVPSKSVHMKQQAGAGSAPPKQ 67
Query: 65 DLKEIHRR 72
+KE+ ++
Sbjct: 68 YVKEVQQK 75
>sp|Q5HGI5|LYTN_STAAC Probable cell wall hydrolase LytN OS=Staphylococcus aureus (strain
COL) GN=lytN PE=3 SV=1
Length = 383
Score = 35.8 bits (81), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Query: 6 RGETLTSISKQYGVSVYSIAAVNKNIVDVDLVFEGQRLNIP 46
+G+TL++I+ +Y +V +I N NI + +L+F GQ+L +P
Sbjct: 181 KGDTLSAIALKYKTTVSNIQNTN-NIANPNLIFIGQKLKVP 220
>sp|Q6GHI8|LYTN_STAAR Probable cell wall hydrolase LytN OS=Staphylococcus aureus (strain
MRSA252) GN=lytN PE=3 SV=2
Length = 383
Score = 35.8 bits (81), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Query: 6 RGETLTSISKQYGVSVYSIAAVNKNIVDVDLVFEGQRLNIP 46
+G+TL++I+ +Y +V +I N NI + +L+F GQ+L +P
Sbjct: 181 KGDTLSAIALKYKTTVSNIQNTN-NIANPNLIFIGQKLKVP 220
>sp|Q7A5Y8|LYTN_STAAN Probable cell wall hydrolase LytN OS=Staphylococcus aureus (strain
N315) GN=lytN PE=3 SV=2
Length = 383
Score = 35.8 bits (81), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Query: 6 RGETLTSISKQYGVSVYSIAAVNKNIVDVDLVFEGQRLNIP 46
+G+TL++I+ +Y +V +I N NI + +L+F GQ+L +P
Sbjct: 181 KGDTLSAIALKYKTTVSNIQNTN-NIANPNLIFIGQKLKVP 220
>sp|Q99UM3|LYTN_STAAM Probable cell wall hydrolase LytN OS=Staphylococcus aureus (strain
Mu50 / ATCC 700699) GN=lytN PE=3 SV=2
Length = 383
Score = 35.8 bits (81), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Query: 6 RGETLTSISKQYGVSVYSIAAVNKNIVDVDLVFEGQRLNIP 46
+G+TL++I+ +Y +V +I N NI + +L+F GQ+L +P
Sbjct: 181 KGDTLSAIALKYKTTVSNIQNTN-NIANPNLIFIGQKLKVP 220
>sp|Q9ZNI1|LYTN_STAA8 Probable cell wall hydrolase LytN OS=Staphylococcus aureus (strain
NCTC 8325) GN=lytN PE=2 SV=2
Length = 383
Score = 35.8 bits (81), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Query: 6 RGETLTSISKQYGVSVYSIAAVNKNIVDVDLVFEGQRLNIP 46
+G+TL++I+ +Y +V +I N NI + +L+F GQ+L +P
Sbjct: 181 KGDTLSAIALKYKTTVSNIQNTN-NIANPNLIFIGQKLKVP 220
>sp|Q7A123|LYTN_STAAW Probable cell wall hydrolase LytN OS=Staphylococcus aureus (strain
MW2) GN=lytN PE=3 SV=2
Length = 383
Score = 35.8 bits (81), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Query: 6 RGETLTSISKQYGVSVYSIAAVNKNIVDVDLVFEGQRLNIP 46
+G+TL++I+ +Y +V +I N NI + +L+F GQ+L +P
Sbjct: 181 KGDTLSAIALKYKTTVSNIQNTN-NIANPNLIFIGQKLKVP 220
>sp|Q6G9W6|LYTN_STAAS Probable cell wall hydrolase LytN OS=Staphylococcus aureus (strain
MSSA476) GN=lytN PE=3 SV=2
Length = 383
Score = 35.8 bits (81), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Query: 6 RGETLTSISKQYGVSVYSIAAVNKNIVDVDLVFEGQRLNIP 46
+G+TL++I+ +Y +V +I N NI + +L+F GQ+L +P
Sbjct: 181 KGDTLSAIALKYKTTVSNIQNTN-NIANPNLIFIGQKLKVP 220
>sp|Q3U4H6|HEXDC_MOUSE Hexosaminidase D OS=Mus musculus GN=Hexdc PE=1 SV=1
Length = 486
Score = 35.0 bits (79), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 25/52 (48%)
Query: 163 HTRIAGGSGHRVANGSKGRHPGSKSVRWKSALRDIIEEDLDSGSRPRTNDPV 214
H ++ VA+ +HPG + W LRDI +E L + P+ +PV
Sbjct: 170 HAKLCLSHMQAVASHVLTQHPGVTPLVWDDMLRDIPQEQLKASGVPQLVEPV 221
>sp|Q8WVB3|HEXDC_HUMAN Hexosaminidase D OS=Homo sapiens GN=HEXDC PE=2 SV=3
Length = 486
Score = 34.7 bits (78), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 174 VANGSKGRHPGSKSVRWKSALRDIIEEDLDSGSRPRTNDPV 214
VA+G K R P + W LRD+ E+ L + P+ +PV
Sbjct: 181 VASGVKARRPSVTPLVWDDMLRDLPEDQLAASGVPQLVEPV 221
>sp|P45744|DHBC_BACSU Isochorismate synthase DhbC OS=Bacillus subtilis (strain 168)
GN=dhbC PE=1 SV=2
Length = 398
Score = 34.3 bits (77), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 204 SGSRPRTNDPVEEQDQAQPLISFEESSHAY 233
+GSRPR+NDPVE+Q +A L+S + H +
Sbjct: 217 AGSRPRSNDPVEDQRRAAELLSSAKDLHEH 246
>sp|P37531|YAAH_BACSU Spore germination protein YaaH OS=Bacillus subtilis (strain 168)
GN=yaaH PE=2 SV=1
Length = 427
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 34/51 (66%), Gaps = 3/51 (5%)
Query: 6 RGETLTSISKQYGVSVYSIAAVNKNIVDVDLVFE-GQRLNIPSSVREELQA 55
RG+TLTSI++Q+ + +A VN+ + ++ V + G RL IP + + ++++
Sbjct: 53 RGDTLTSIARQFNTTAAELARVNR--IQLNTVLQIGFRLYIPPAPKRDIES 101
>sp|P37710|ALYS_ENTFA Autolysin OS=Enterococcus faecalis (strain ATCC 700802 / V583)
GN=EF_0799 PE=3 SV=2
Length = 737
Score = 33.1 bits (74), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
Query: 7 GETLTSISKQYGVSVYSIAAVNKNIVDVDLVFEGQRL 43
G+TL I+ QYGVSV ++ + N + DL+F GQ+L
Sbjct: 368 GDTLNKIAAQYGVSVANLRSWNG--ISGDLIFVGQKL 402
Score = 33.1 bits (74), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
Query: 7 GETLTSISKQYGVSVYSIAAVNKNIVDVDLVFEGQRL 43
G+TL I+ QYGVSV ++ + N + DL+F GQ+L
Sbjct: 436 GDTLNKIAAQYGVSVANLRSWNG--ISGDLIFVGQKL 470
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
Query: 7 GETLTSISKQYGVSVYSIAAVNKNIVDVDLVFEGQRL 43
G+TL I+ QYGVSV ++ + N + DL+F GQ++
Sbjct: 504 GDTLNKIAAQYGVSVANLRSWNG--ISGDLIFAGQKI 538
Score = 32.3 bits (72), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Query: 7 GETLTSISKQYGVSVYSIAAVNKNIVDVDLVFEGQRL 43
G+TL IS Q+GVSV ++ A N + L+F GQ++
Sbjct: 572 GDTLNKISAQFGVSVANLQAWNN--ISGSLIFAGQKI 606
>sp|Q08750|MUM3_YEAST Protein MUM3 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=MUM3 PE=4 SV=1
Length = 479
Score = 32.7 bits (73), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/106 (20%), Positives = 48/106 (45%), Gaps = 15/106 (14%)
Query: 130 EITHGLPQAKTTGYFLVVVPLIAFCIRCMIGAFHTRIAGGSGHRVANGSKGRHPGSKSVR 189
EI+ G P+ ++ V +I + ++ SGH NG H G + +
Sbjct: 356 EISSGKPKVVRINPYIYDVTIIYYRVK----------YTDSGHDHTNGDLRLHKGYQLEQ 405
Query: 190 WKSALRDIIEEDLDSGSRPRTNDPV-----EEQDQAQPLISFEESS 230
+ ++I+ +++S + + DP+ ++ Q QPL+++ + S
Sbjct: 406 ISPTIFEMIQPEMESENNIKDKDPIVVMVNVKKHQIQPLLAYNDES 451
>sp|Q37896|LYS_BPB03 Lysozyme OS=Bacillus phage B103 GN=15 PE=3 SV=1
Length = 263
Score = 32.7 bits (73), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 6 RGETLTSISKQYGVSVYSIAAVNKNIVDVDLVFEGQRLNI 45
RGETLT I+K+ +V + +N NI + + ++ GQ + +
Sbjct: 223 RGETLTGIAKKNKTTVSQLMKLNPNIKNANNIYAGQTIRL 262
Score = 31.6 bits (70), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 6 RGETLTSISKQYGVSVYSIAAVNKNIVDVDLVFEGQRLNIPSS-VREELQATVK 58
+G+TL+ I+K+ S ++ +N I + + ++ GQR+N+ S V+ L+ +K
Sbjct: 169 KGDTLSEIAKKIKTSTKTLLELNPTIKNPNKIYVGQRINVGGSPVKSTLKYKIK 222
>sp|Q1JQA8|LYSM2_BOVIN LysM and putative peptidoglycan-binding domain-containing protein 2
OS=Bos taurus GN=LYSMD2 PE=2 SV=1
Length = 215
Score = 32.0 bits (71), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 7 GETLTSISKQYGVSVYSIAAVNKNIVDVDLVFEGQRLNIP 46
G+TL I+ +YGVS+ I NK + D +F + LNIP
Sbjct: 79 GDTLQGIALKYGVSMEQIKRANKLFTN-DCIFLKKTLNIP 117
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.137 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 104,140,763
Number of Sequences: 539616
Number of extensions: 4417906
Number of successful extensions: 10704
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 10690
Number of HSP's gapped (non-prelim): 27
length of query: 261
length of database: 191,569,459
effective HSP length: 115
effective length of query: 146
effective length of database: 129,513,619
effective search space: 18908988374
effective search space used: 18908988374
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)