Query 024853
Match_columns 261
No_of_seqs 219 out of 1322
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 15:32:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024853.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024853hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l9y_A CVNH-LYSM lectin; carbo 99.4 1.4E-14 4.9E-19 123.2 1.4 89 2-96 65-155 (167)
2 4eby_A Chitin elicitor recepto 99.4 8.7E-14 3E-18 122.3 3.9 90 2-97 12-112 (212)
3 1e0g_A Membrane-bound lytic mu 99.3 1.1E-12 3.8E-17 87.8 5.1 44 1-47 4-47 (48)
4 4eby_A Chitin elicitor recepto 99.3 3.5E-13 1.2E-17 118.4 2.4 91 1-97 80-174 (212)
5 2djp_A Hypothetical protein SB 99.3 1.2E-12 4E-17 96.7 4.2 46 2-48 18-63 (77)
6 2gu1_A Zinc peptidase; alpha/b 98.8 3.9E-10 1.3E-14 105.2 -1.5 97 1-98 9-132 (361)
7 4a1k_A Putative L, D-transpept 98.5 5.7E-08 1.9E-12 82.0 4.7 44 2-47 5-48 (165)
8 2gu1_A Zinc peptidase; alpha/b 97.4 5.9E-05 2E-09 70.2 3.1 46 2-48 103-153 (361)
9 3slu_A M23 peptidase domain pr 96.5 0.0028 9.7E-08 59.8 5.5 47 1-47 16-65 (371)
10 2djp_A Hypothetical protein SB 87.6 0.059 2E-06 38.9 -1.4 45 39-98 3-47 (77)
11 2glo_A Brinker CG9653-PA; prot 60.6 4.9 0.00017 27.1 2.3 24 5-28 19-46 (59)
12 1tc3_C Protein (TC3 transposas 51.6 15 0.0005 22.2 3.2 23 5-27 19-41 (51)
13 2jn6_A Protein CGL2762, transp 49.9 11 0.00036 27.5 2.7 22 7-28 23-44 (97)
14 2lfc_A Fumarate reductase, fla 48.8 10 0.00035 30.7 2.7 25 4-28 92-120 (160)
15 2elh_A CG11849-PA, LD40883P; s 47.9 14 0.00049 26.7 3.1 23 5-27 36-58 (87)
16 2l9y_A CVNH-LYSM lectin; carbo 46.7 3 0.0001 34.8 -0.8 31 69-99 65-95 (167)
17 1jko_C HIN recombinase, DNA-in 46.4 12 0.00041 23.1 2.2 23 5-27 19-41 (52)
18 2jrt_A Uncharacterized protein 41.7 15 0.00051 28.1 2.5 25 5-29 47-71 (95)
19 2rn7_A IS629 ORFA; helix, all 33.6 14 0.00049 27.2 1.2 22 7-28 30-51 (108)
20 1pdn_C Protein (PRD paired); p 31.0 32 0.0011 24.9 2.8 23 5-27 31-53 (128)
21 2x48_A CAG38821; archeal virus 30.0 47 0.0016 21.3 3.2 23 5-27 29-51 (55)
22 1rr7_A Middle operon regulator 27.9 41 0.0014 26.8 3.1 22 6-27 91-112 (129)
23 1k78_A Paired box protein PAX5 25.6 43 0.0015 25.7 2.8 23 5-27 46-68 (149)
24 1u78_A TC3 transposase, transp 24.7 47 0.0016 24.8 2.8 23 5-27 20-42 (141)
25 3slu_A M23 peptidase domain pr 24.0 47 0.0016 31.0 3.2 40 7-47 117-160 (371)
26 2lnh_A N-WAsp, neural wiskott- 20.2 25 0.00086 25.3 0.3 20 233-252 20-39 (65)
No 1
>2l9y_A CVNH-LYSM lectin; carbohydrate, sugar binding protein; NMR {Magnaporthe oryzae 70-15}
Probab=99.44 E-value=1.4e-14 Score=123.23 Aligned_cols=89 Identities=20% Similarity=0.210 Sum_probs=67.8
Q ss_pred eeecCCCCHHHHHHHhCCCHHHHHHhcCCCCCCCCcCCCCEEEeCCCcchhhh-hhhhhccccchhhH-HhhhhhhhHHh
Q 024853 2 TFGGRGETLTSISKQYGVSVYSIAAVNKNIVDVDLVFEGQRLNIPSSVREELQ-ATVKNVISSFDLKE-IHRRSLNVFYG 79 (261)
Q Consensus 2 YtVq~GDTL~sIAkrYgVSv~~I~~~NP~I~~~d~L~pGQ~L~IP~~~~~~~q-~t~~~~~s~y~i~~-~~~~s~~tly~ 79 (261)
|+||+|||||.||++||+++.+|+++| +|.+++.|+|||+|.||........ ..+.. +-.. +....+++|++
T Consensus 65 y~V~~GDTL~~IA~~~~~~~~~l~~~N-~~~~~~~i~~Gq~L~ip~~~~~~~~~~~~~~-----~~~~~~~v~~GdtL~a 138 (167)
T 2l9y_A 65 VTVQQGDTLRDIGRRFDCDFHEIARRN-NIQNEDLIYPGQVLQVPTKGGSGGGAGNFWD-----SARDVRLVDGGKVLEA 138 (167)
T ss_dssp EEECTTCCHHHHHHHTTCCHHHHHHHH-TCCGGGCCCTTEEEEESCCCCCSSSSCCGGG-----GEEEEEEETTTTEEEE
T ss_pred EEECCCCcHHHHHHHcCCCHHHHHHHc-CCCCcccccCCCEEEEcCCCCcccccccccc-----ccceEEEeCCcCChHH
Confidence 999999999999999999999999999 8999999999999999975432110 00000 0011 12367999999
Q ss_pred hhhhcccchhhhccCCc
Q 024853 80 RLDKRHISMQITHRLPH 96 (261)
Q Consensus 80 ~~~k~gism~~l~~lp~ 96 (261)
+++++|..+.....|.+
T Consensus 139 IA~r~G~~v~s~i~Ln~ 155 (167)
T 2l9y_A 139 ELRYSGGWNRSRIYLDE 155 (167)
T ss_dssp EEEETTEEEEEEECGGG
T ss_pred HHHHcCCceEEEEEccc
Confidence 99889988777666654
No 2
>4eby_A Chitin elicitor receptor kinase 1; pathogen-associated molecular patterns, pattern recognition receptors, LYSM, lysine chitin oligomer; HET: NAG BMA; 1.65A {Arabidopsis thaliana} PDB: 4ebz_A*
Probab=99.40 E-value=8.7e-14 Score=122.27 Aligned_cols=90 Identities=18% Similarity=0.160 Sum_probs=70.9
Q ss_pred eeecCCCCHHHHHHHhCCCH--------HHHHHhcCCCCCCCCcCCCCEEEeCCCcchhhhhhhhhccccchhhHHhhhh
Q 024853 2 TFGGRGETLTSISKQYGVSV--------YSIAAVNKNIVDVDLVFEGQRLNIPSSVREELQATVKNVISSFDLKEIHRRS 73 (261)
Q Consensus 2 YtVq~GDTL~sIAkrYgVSv--------~~I~~~NP~I~~~d~L~pGQ~L~IP~~~~~~~q~t~~~~~s~y~i~~~~~~s 73 (261)
|+|++|||||.||++||+++ ++|+++||+|.+++.|++||.|.||......... ... ....+....
T Consensus 12 Y~V~~GDTL~~IA~~~~vsv~~~~~~~~~~I~~~Np~l~~~~~l~~Gq~L~IP~~~~~~~~~-~~~-----~~~~Y~V~~ 85 (212)
T 4eby_A 12 YYLENGTTLSVINQNLNSSIAPYDQINFDPILRYNSNIKDKDRIQMGSRVLVPFPCECQPGD-FLG-----HNFSYSVRQ 85 (212)
T ss_dssp EECCTTCCHHHHHHHTCCSSSCCCSSCCHHHHTTCTTCSCTTSCCTTCEEEEEECCEEETTT-EEE-----EEEEEECCT
T ss_pred EEeCCCCCHHHHHHHHCCCchhccccCHHHHHHhccCCCCcCccCCCCEEEEeccccccCCc-ccc-----CceEEEecC
Confidence 99999999999999999999 9999999999878999999999999653211100 000 011234567
Q ss_pred hhhHHhhh-hhcc--cchhhhccCCcc
Q 024853 74 LNVFYGRL-DKRH--ISMQITHRLPHI 97 (261)
Q Consensus 74 ~~tly~~~-~k~g--ism~~l~~lp~i 97 (261)
++|||.++ ++++ ++++.+.+++.+
T Consensus 86 GDTL~~IA~~~y~~lvt~~~L~~~N~~ 112 (212)
T 4eby_A 86 EDTYERVAISNYANLTTMESLQARNPF 112 (212)
T ss_dssp TCCHHHHHHTTTTTSSCHHHHHHHCCS
T ss_pred CCcHHHHHHHhcCCCCCHHHHHHhcCC
Confidence 99999999 8999 999999888753
No 3
>1e0g_A Membrane-bound lytic murein transglycosylase D; cell WALL, hydrolase, glycosidase, lipoprotein, outer membrane, multigene family; NMR {Escherichia coli} SCOP: d.7.1.1
Probab=99.33 E-value=1.1e-12 Score=87.81 Aligned_cols=44 Identities=25% Similarity=0.358 Sum_probs=41.1
Q ss_pred CeeecCCCCHHHHHHHhCCCHHHHHHhcCCCCCCCCcCCCCEEEeCC
Q 024853 1 MTFGGRGETLTSISKQYGVSVYSIAAVNKNIVDVDLVFEGQRLNIPS 47 (261)
Q Consensus 1 mYtVq~GDTL~sIAkrYgVSv~~I~~~NP~I~~~d~L~pGQ~L~IP~ 47 (261)
.|+|++|||||+||++||+++++|+++|+ +++.|++||+|.||.
T Consensus 4 ~y~V~~GDtl~~Ia~~~~~~~~~l~~~N~---~~~~l~~G~~l~ip~ 47 (48)
T 1e0g_A 4 TYRVRKGDSLSSIAKRHGVNIKDVMRWNS---DTANLQPGDKLTLFV 47 (48)
T ss_dssp EEEECTTCCHHHHHHHHTCCHHHHHHHCS---CGGGCCTTEEEECCC
T ss_pred EEEEcCCCcHHHHHHHHCcCHHHHHHhCC---CCCcCCcCCEEEEec
Confidence 38999999999999999999999999995 578999999999995
No 4
>4eby_A Chitin elicitor receptor kinase 1; pathogen-associated molecular patterns, pattern recognition receptors, LYSM, lysine chitin oligomer; HET: NAG BMA; 1.65A {Arabidopsis thaliana} PDB: 4ebz_A*
Probab=99.32 E-value=3.5e-13 Score=118.45 Aligned_cols=91 Identities=15% Similarity=0.106 Sum_probs=69.5
Q ss_pred CeeecCCCCHHHHH-HHhC--CCHHHHHHhcCCCCCCCCcCCCCEEEeCCCcchhhhhhhhhccccchh-hHHhhhhhhh
Q 024853 1 MTFGGRGETLTSIS-KQYG--VSVYSIAAVNKNIVDVDLVFEGQRLNIPSSVREELQATVKNVISSFDL-KEIHRRSLNV 76 (261)
Q Consensus 1 mYtVq~GDTL~sIA-krYg--VSv~~I~~~NP~I~~~d~L~pGQ~L~IP~~~~~~~q~t~~~~~s~y~i-~~~~~~s~~t 76 (261)
.|+|++|||||+|| ++|+ +++++|+++|+ + +++.|++||+|.||......... ....+.. ..+....++|
T Consensus 80 ~Y~V~~GDTL~~IA~~~y~~lvt~~~L~~~N~-~-~~~~l~~Gq~L~IP~~~~~~~~~----~~~~~~~~~~Y~V~~GDT 153 (212)
T 4eby_A 80 SYSVRQEDTYERVAISNYANLTTMESLQARNP-F-PATNIPLSATLNVLVNCSCGDES----VSKDFGLFVTYPLRPEDS 153 (212)
T ss_dssp EEECCTTCCHHHHHHTTTTTSSCHHHHHHHCC-S-CTTCCCTTCEEEEEEECCCCCTT----TCSSCCCEEEEECCTTCC
T ss_pred EEEecCCCcHHHHHHHhcCCCCCHHHHHHhcC-C-CcccCCCCCEEEEcCCCcCCCcc----cccCCCCeEEEEECCCCc
Confidence 39999999999999 7999 99999999995 6 57899999999999643211111 0111111 1234577999
Q ss_pred HHhhhhhcccchhhhccCCcc
Q 024853 77 FYGRLDKRHISMQITHRLPHI 97 (261)
Q Consensus 77 ly~~~~k~gism~~l~~lp~i 97 (261)
|+++++++|++++.+.+++.+
T Consensus 154 L~~IA~~fgvsv~~L~~~N~~ 174 (212)
T 4eby_A 154 LSSIARSSGVSADILQRYNPG 174 (212)
T ss_dssp HHHHHHHHTSCHHHHHHHSTT
T ss_pred HHHHHHHHCcCHHHHHHhcCC
Confidence 999999999999999998754
No 5
>2djp_A Hypothetical protein SB145; LYSM, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.30 E-value=1.2e-12 Score=96.71 Aligned_cols=46 Identities=28% Similarity=0.411 Sum_probs=43.4
Q ss_pred eeecCCCCHHHHHHHhCCCHHHHHHhcCCCCCCCCcCCCCEEEeCCC
Q 024853 2 TFGGRGETLTSISKQYGVSVYSIAAVNKNIVDVDLVFEGQRLNIPSS 48 (261)
Q Consensus 2 YtVq~GDTL~sIAkrYgVSv~~I~~~NP~I~~~d~L~pGQ~L~IP~~ 48 (261)
|+|++|||||+||++|++++++|+++| ++.+++.|++||+|.||..
T Consensus 18 y~V~~GDTL~~IA~~~~~~~~~l~~~N-~l~~~~~l~~Gq~l~iP~~ 63 (77)
T 2djp_A 18 HQLEPGDTLAGLALKYGVTMEQIKRAN-RLYTNDSIFLKKTLYIPIL 63 (77)
T ss_dssp ECCCTTCCHHHHHHHHTCCHHHHHHHH-TCCCSSCGGGSSCEEEEEE
T ss_pred EEECCCCcHHHHHHHHCcCHHHHHHHc-CCCCccccCCCCEEEECCC
Confidence 999999999999999999999999999 7877789999999999964
No 6
>2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural genomics, PSI, protein structure initiative; 1.90A {Vibrio cholerae}
Probab=98.78 E-value=3.9e-10 Score=105.20 Aligned_cols=97 Identities=14% Similarity=0.121 Sum_probs=67.4
Q ss_pred CeeecCCCCHHHHHHHhCCCHHHHHHhcCCCCC----CCCcCCCCEEEeCCCcchh-----------hhhhhhhc-cccc
Q 024853 1 MTFGGRGETLTSISKQYGVSVYSIAAVNKNIVD----VDLVFEGQRLNIPSSVREE-----------LQATVKNV-ISSF 64 (261)
Q Consensus 1 mYtVq~GDTL~sIAkrYgVSv~~I~~~NP~I~~----~d~L~pGQ~L~IP~~~~~~-----------~q~t~~~~-~s~y 64 (261)
.|+|++|||||+||++||+++++|.++| ++.. .+.|++||.|.||...... .+.++... ...|
T Consensus 9 ~~~Vk~GDTL~~Ia~r~gvs~~~l~~~n-~~~~~~~~~~~L~~Gq~L~i~~~~~~~l~~l~~~~~~~~~~~~~~~~~g~f 87 (361)
T 2gu1_A 9 HYMVKVGDTLSGIFAQLGVPYSILQKIL-SVDLDHLQLDMIQPGEELELMMDDMGQLSRLIYHMSIVEKAIYTRENDGSF 87 (361)
T ss_dssp EEECCTTCCHHHHHHHTTCCHHHHHHHH-HHGGGTCCGGGCCTTCEEEEEECTTSCEEEEEEEEETTEEEEEEECTTSCE
T ss_pred EEEECCCCcHHHHHHHcCCCHHHHHHHH-hhcccccchhcCCCCCEEEEEECCCCcceEEEEEcCccceEEEEecCCCcc
Confidence 3899999999999999999999999999 5532 4789999999999542210 00000000 0001
Q ss_pred h-----------hhHHhhhhhhhHHhhhhhcccchhhhccCCccc
Q 024853 65 D-----------LKEIHRRSLNVFYGRLDKRHISMQITHRLPHIW 98 (261)
Q Consensus 65 ~-----------i~~~~~~s~~tly~~~~k~gism~~l~~lp~i~ 98 (261)
. ...+.....++||.+++++|++.+.+.+++++.
T Consensus 88 ~~~~~~~~~~~~~~~~~v~igdSL~~iA~~~Gvs~~~i~~ln~i~ 132 (361)
T 2gu1_A 88 SYDFQEISGEWREILFSGEINGSFSVSARRVGLTSSQVANITQVM 132 (361)
T ss_dssp EEEEEECCCEEEEEEEEEESSSCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred eeeecccCceEEEEEEEEEECCcHHHHHHHcCCCHHHHHHHHHhh
Confidence 0 011233557899999999999999988876654
No 7
>4a1k_A Putative L, D-transpeptidase YKUD; transferase, peptidoglycan synthesis; HET: CME; 1.75A {Bacillus subtilis} PDB: 4a1j_A 4a1i_A* 1y7m_A 3zqd_A 4a52_A*
Probab=98.53 E-value=5.7e-08 Score=81.95 Aligned_cols=44 Identities=25% Similarity=0.390 Sum_probs=40.5
Q ss_pred eeecCCCCHHHHHHHhCCCHHHHHHhcCCCCCCCCcCCCCEEEeCC
Q 024853 2 TFGGRGETLTSISKQYGVSVYSIAAVNKNIVDVDLVFEGQRLNIPS 47 (261)
Q Consensus 2 YtVq~GDTL~sIAkrYgVSv~~I~~~NP~I~~~d~L~pGQ~L~IP~ 47 (261)
|+||+||||..||++|+++..+|+++||++ ++ .|.+|+.|.||.
T Consensus 5 y~V~~GdtL~~IA~~f~~g~~~l~~aNp~v-d~-~l~~g~~i~ip~ 48 (165)
T 4a1k_A 5 YQVKQGDTLNSIAADFRISTAALLQANPSL-QA-GLTAGQSIVIPG 48 (165)
T ss_dssp EECCTTCCHHHHHHHTTCCHHHHHHHCGGG-GG-CCCTTCEEEETT
T ss_pred EEECCCCCHHHHHHHhCCCHHHHHHhCccC-CC-ccCCCccccCcc
Confidence 999999999999999999999999999977 33 579999999985
No 8
>2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural genomics, PSI, protein structure initiative; 1.90A {Vibrio cholerae}
Probab=97.42 E-value=5.9e-05 Score=70.22 Aligned_cols=46 Identities=13% Similarity=0.268 Sum_probs=38.8
Q ss_pred eeecCCCCHHHHHHHhCCCHHHHHHhcCCCCCC-----CCcCCCCEEEeCCC
Q 024853 2 TFGGRGETLTSISKQYGVSVYSIAAVNKNIVDV-----DLVFEGQRLNIPSS 48 (261)
Q Consensus 2 YtVq~GDTL~sIAkrYgVSv~~I~~~NP~I~~~-----d~L~pGQ~L~IP~~ 48 (261)
|+|+.|||||.||++||+++++|+++| ++... ..|++||+|.|+..
T Consensus 103 ~~v~igdSL~~iA~~~Gvs~~~i~~ln-~i~~~~idf~~~Lr~GD~l~V~~~ 153 (361)
T 2gu1_A 103 FSGEINGSFSVSARRVGLTSSQVANIT-QVMKDKIDFSRSLRAGDRFDILVK 153 (361)
T ss_dssp EEEESSSCHHHHHHHTTCCHHHHHHHH-HHHTTTCCTTTCCCC-CEEEEEEE
T ss_pred EEEEECCcHHHHHHHcCCCHHHHHHHH-HhhcccccccccCCCCCEEEEEEE
Confidence 678899999999999999999999999 56432 45999999999853
No 9
>3slu_A M23 peptidase domain protein; outer membrane, hydrolase; 2.41A {Neisseria meningitidis}
Probab=96.48 E-value=0.0028 Score=59.77 Aligned_cols=47 Identities=15% Similarity=0.224 Sum_probs=38.0
Q ss_pred CeeecCCCCHHHHHHHhCCCHHHHHHhcCCC---CCCCCcCCCCEEEeCC
Q 024853 1 MTFGGRGETLTSISKQYGVSVYSIAAVNKNI---VDVDLVFEGQRLNIPS 47 (261)
Q Consensus 1 mYtVq~GDTL~sIAkrYgVSv~~I~~~NP~I---~~~d~L~pGQ~L~IP~ 47 (261)
.|+|++||||.+|-+++|++..++.+.+... .+...|+|||.|.+..
T Consensus 16 ~~~V~~GDTL~~IL~r~Gls~~di~~i~~~~~~~~~l~~LrpGq~l~i~~ 65 (371)
T 3slu_A 16 QEAVQPGDSLADVLARSGMARDEIARITEKYGGEADLRHLRADQSVHVLV 65 (371)
T ss_dssp EEECCTTCCHHHHHHHTTCCHHHHHHHHTTC------CCBCSSSEEEEEE
T ss_pred EEEECCCCcHHHHHHHcCCCHHHHHHHHHhccccCchhhCCCCCEEEEEE
Confidence 3899999999999999999999888876322 2457899999999964
No 10
>2djp_A Hypothetical protein SB145; LYSM, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.58 E-value=0.059 Score=38.90 Aligned_cols=45 Identities=18% Similarity=0.146 Sum_probs=33.7
Q ss_pred CCCEEEeCCCcchhhhhhhhhccccchhhHHhhhhhhhHHhhhhhcccchhhhccCCccc
Q 024853 39 EGQRLNIPSSVREELQATVKNVISSFDLKEIHRRSLNVFYGRLDKRHISMQITHRLPHIW 98 (261)
Q Consensus 39 pGQ~L~IP~~~~~~~q~t~~~~~s~y~i~~~~~~s~~tly~~~~k~gism~~l~~lp~i~ 98 (261)
.||.|.||.... + ..+....++||++++++++++++.+.+++.+.
T Consensus 3 ~Gq~l~ip~~~~-------------~--~~y~V~~GDTL~~IA~~~~~~~~~l~~~N~l~ 47 (77)
T 2djp_A 3 SGSSGCSPVRER-------------R--LEHQLEPGDTLAGLALKYGVTMEQIKRANRLY 47 (77)
T ss_dssp CCCCCCCCCCEE-------------E--EEECCCTTCCHHHHHHHHTCCHHHHHHHHTCC
T ss_pred CCcEeeccCCCC-------------c--EEEEECCCCcHHHHHHHHCcCHHHHHHHcCCC
Confidence 689999985421 1 11234679999999999999999998887654
No 11
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=60.62 E-value=4.9 Score=27.09 Aligned_cols=24 Identities=8% Similarity=0.135 Sum_probs=20.6
Q ss_pred cCCCC----HHHHHHHhCCCHHHHHHhc
Q 024853 5 GRGET----LTSISKQYGVSVYSIAAVN 28 (261)
Q Consensus 5 q~GDT----L~sIAkrYgVSv~~I~~~N 28 (261)
..|.+ +..||++|||+...|..|=
T Consensus 19 ~~g~s~~~~~~~vA~~~gIs~~tl~~W~ 46 (59)
T 2glo_A 19 RNDNDCKGNQRATARKYNIHRRQIQKWL 46 (59)
T ss_dssp HHCTTTTTCHHHHHHHTTSCHHHHHHHH
T ss_pred HcCCCcchHHHHHHHHHCcCHHHHHHHH
Confidence 45677 9999999999999998874
No 12
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=51.56 E-value=15 Score=22.19 Aligned_cols=23 Identities=17% Similarity=0.066 Sum_probs=20.1
Q ss_pred cCCCCHHHHHHHhCCCHHHHHHh
Q 024853 5 GRGETLTSISKQYGVSVYSIAAV 27 (261)
Q Consensus 5 q~GDTL~sIAkrYgVSv~~I~~~ 27 (261)
..|-|...||+.+|++...+..+
T Consensus 19 ~~g~s~~~IA~~lgis~~Tv~~~ 41 (51)
T 1tc3_C 19 LLNVSLHEMSRKISRSRHCIRVY 41 (51)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHH
Confidence 46889999999999999988765
No 13
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=49.88 E-value=11 Score=27.49 Aligned_cols=22 Identities=18% Similarity=0.377 Sum_probs=20.0
Q ss_pred CCCHHHHHHHhCCCHHHHHHhc
Q 024853 7 GETLTSISKQYGVSVYSIAAVN 28 (261)
Q Consensus 7 GDTL~sIAkrYgVSv~~I~~~N 28 (261)
|-|+..||+.|||+...|..|=
T Consensus 23 g~s~~~ia~~~gIs~~tl~rW~ 44 (97)
T 2jn6_A 23 GASLQQIANDLGINRVTLKNWI 44 (97)
T ss_dssp GSCHHHHHHHHTSCHHHHHHHH
T ss_pred CChHHHHHHHHCcCHHHHHHHH
Confidence 8899999999999999988773
No 14
>2lfc_A Fumarate reductase, flavoprotein subunit; structural genomics, northeast structural genomics consortiu PSI-biology; NMR {Lactobacillus plantarum}
Probab=48.77 E-value=10 Score=30.65 Aligned_cols=25 Identities=20% Similarity=0.118 Sum_probs=20.6
Q ss_pred ecCCCCHHHHHHHhCCCHHH----HHHhc
Q 024853 4 GGRGETLTSISKQYGVSVYS----IAAVN 28 (261)
Q Consensus 4 Vq~GDTL~sIAkrYgVSv~~----I~~~N 28 (261)
+.++|||..+|++.|++++. +.+.|
T Consensus 92 ~~kadTleeLA~~~gid~~~L~~TV~~yN 120 (160)
T 2lfc_A 92 VFVKGSLESAAEQAGIVVDELVQTVKNYQ 120 (160)
T ss_dssp SEECSSHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred eEecCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 46789999999999999875 55566
No 15
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=47.86 E-value=14 Score=26.68 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=20.2
Q ss_pred cCCCCHHHHHHHhCCCHHHHHHh
Q 024853 5 GRGETLTSISKQYGVSVYSIAAV 27 (261)
Q Consensus 5 q~GDTL~sIAkrYgVSv~~I~~~ 27 (261)
..|.++..||++|||+...|..|
T Consensus 36 ~~g~s~~~iA~~~gIs~sTl~rW 58 (87)
T 2elh_A 36 HDGESKASVARDIGVPESTLRGW 58 (87)
T ss_dssp HHTCCHHHHHHHHTCCHHHHHHH
T ss_pred HCCCCHHHHHHHHCcCHHHHHHH
Confidence 46889999999999999988766
No 16
>2l9y_A CVNH-LYSM lectin; carbohydrate, sugar binding protein; NMR {Magnaporthe oryzae 70-15}
Probab=46.67 E-value=3 Score=34.80 Aligned_cols=31 Identities=6% Similarity=-0.041 Sum_probs=26.3
Q ss_pred HhhhhhhhHHhhhhhcccchhhhccCCcccc
Q 024853 69 IHRRSLNVFYGRLDKRHISMQITHRLPHIWR 99 (261)
Q Consensus 69 ~~~~s~~tly~~~~k~gism~~l~~lp~i~~ 99 (261)
+....++|||+|++++|+++..+.+++.|..
T Consensus 65 y~V~~GDTL~~IA~~~~~~~~~l~~~N~~~~ 95 (167)
T 2l9y_A 65 VTVQQGDTLRDIGRRFDCDFHEIARRNNIQN 95 (167)
T ss_dssp EEECTTCCHHHHHHHTTCCHHHHHHHHTCCG
T ss_pred EEECCCCcHHHHHHHcCCCHHHHHHHcCCCC
Confidence 3457899999999999999999988876553
No 17
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=46.39 E-value=12 Score=23.11 Aligned_cols=23 Identities=13% Similarity=0.349 Sum_probs=20.3
Q ss_pred cCCCCHHHHHHHhCCCHHHHHHh
Q 024853 5 GRGETLTSISKQYGVSVYSIAAV 27 (261)
Q Consensus 5 q~GDTL~sIAkrYgVSv~~I~~~ 27 (261)
..|-|+..||+.+||+...+..+
T Consensus 19 ~~g~s~~~ia~~lgvs~~Tv~r~ 41 (52)
T 1jko_C 19 EKGHPRQQLAIIFGIGVSTLYRY 41 (52)
T ss_dssp HTTCCHHHHHHTTSCCHHHHHHH
T ss_pred HcCCCHHHHHHHHCCCHHHHHHH
Confidence 46889999999999999998865
No 18
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=41.66 E-value=15 Score=28.06 Aligned_cols=25 Identities=16% Similarity=-0.036 Sum_probs=21.8
Q ss_pred cCCCCHHHHHHHhCCCHHHHHHhcC
Q 024853 5 GRGETLTSISKQYGVSVYSIAAVNK 29 (261)
Q Consensus 5 q~GDTL~sIAkrYgVSv~~I~~~NP 29 (261)
..+.|+..+|++|+|+.++|..|-.
T Consensus 47 ~g~~s~~e~arry~Is~s~i~~W~r 71 (95)
T 2jrt_A 47 HGLITEREALDRYSLSEEEFALWRS 71 (95)
T ss_dssp TTSSCHHHHHHHTTCCHHHHHHHHH
T ss_pred cCCCCHHHHHHHhCCCHHHHHHHHH
Confidence 4566999999999999999999873
No 19
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=33.60 E-value=14 Score=27.23 Aligned_cols=22 Identities=18% Similarity=0.167 Sum_probs=19.1
Q ss_pred CCCHHHHHHHhCCCHHHHHHhc
Q 024853 7 GETLTSISKQYGVSVYSIAAVN 28 (261)
Q Consensus 7 GDTL~sIAkrYgVSv~~I~~~N 28 (261)
|.++..||++|||+...|..|=
T Consensus 30 g~s~~~va~~~gIs~~tl~~W~ 51 (108)
T 2rn7_A 30 WATICSIAPKIGCTPETLRVWV 51 (108)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHH
T ss_pred cccHHHHHHHHCcCHHHHHHHH
Confidence 4689999999999999988773
No 20
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=31.05 E-value=32 Score=24.94 Aligned_cols=23 Identities=26% Similarity=0.252 Sum_probs=19.7
Q ss_pred cCCCCHHHHHHHhCCCHHHHHHh
Q 024853 5 GRGETLTSISKQYGVSVYSIAAV 27 (261)
Q Consensus 5 q~GDTL~sIAkrYgVSv~~I~~~ 27 (261)
+.|-++..||+.+|++...+..|
T Consensus 31 ~~g~s~~~ia~~lgis~~Tv~~w 53 (128)
T 1pdn_C 31 ADGIRPCVISRQLRVSHGCVSKI 53 (128)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHH
Confidence 47999999999999998877654
No 21
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=29.98 E-value=47 Score=21.25 Aligned_cols=23 Identities=26% Similarity=0.301 Sum_probs=19.8
Q ss_pred cCCCCHHHHHHHhCCCHHHHHHh
Q 024853 5 GRGETLTSISKQYGVSVYSIAAV 27 (261)
Q Consensus 5 q~GDTL~sIAkrYgVSv~~I~~~ 27 (261)
..|-|...||+.+|++...+..+
T Consensus 29 ~~g~s~~eIA~~lgis~~TV~~~ 51 (55)
T 2x48_A 29 KMGYTVQQIANALGVSERKVRRY 51 (55)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHH
Confidence 46889999999999999988754
No 22
>1rr7_A Middle operon regulator; MOR, transcription; 2.20A {Enterobacteria phage MU} SCOP: a.4.1.14
Probab=27.86 E-value=41 Score=26.76 Aligned_cols=22 Identities=18% Similarity=0.566 Sum_probs=19.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHh
Q 024853 6 RGETLTSISKQYGVSVYSIAAV 27 (261)
Q Consensus 6 ~GDTL~sIAkrYgVSv~~I~~~ 27 (261)
.|.++..+|++||+|...|.+.
T Consensus 91 ~G~n~~eLArkYgLSer~I~~I 112 (129)
T 1rr7_A 91 NGRNVSELTTRYGVTFNTVYKA 112 (129)
T ss_dssp CSSCHHHHHHHHTCCHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHH
Confidence 4889999999999999988753
No 23
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=25.63 E-value=43 Score=25.73 Aligned_cols=23 Identities=26% Similarity=0.284 Sum_probs=20.1
Q ss_pred cCCCCHHHHHHHhCCCHHHHHHh
Q 024853 5 GRGETLTSISKQYGVSVYSIAAV 27 (261)
Q Consensus 5 q~GDTL~sIAkrYgVSv~~I~~~ 27 (261)
+.|.++..||+.+|++...|..|
T Consensus 46 ~~G~s~~~iA~~lgis~~TV~rw 68 (149)
T 1k78_A 46 HQGVRPCDISRQLRVSHGCVSKI 68 (149)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHH
Confidence 47999999999999999887655
No 24
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=24.75 E-value=47 Score=24.75 Aligned_cols=23 Identities=17% Similarity=0.066 Sum_probs=20.4
Q ss_pred cCCCCHHHHHHHhCCCHHHHHHh
Q 024853 5 GRGETLTSISKQYGVSVYSIAAV 27 (261)
Q Consensus 5 q~GDTL~sIAkrYgVSv~~I~~~ 27 (261)
+.|.+...||+.+|++...+..+
T Consensus 20 ~~G~s~~~ia~~lgis~~Tv~r~ 42 (141)
T 1u78_A 20 LLNVSLHEMSRKISRSRHCIRVY 42 (141)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHH
Confidence 57999999999999999987765
No 25
>3slu_A M23 peptidase domain protein; outer membrane, hydrolase; 2.41A {Neisseria meningitidis}
Probab=24.00 E-value=47 Score=30.96 Aligned_cols=40 Identities=15% Similarity=0.120 Sum_probs=31.3
Q ss_pred CCCHHHHHHHhCCCHHHHHHhcCCCC----CCCCcCCCCEEEeCC
Q 024853 7 GETLTSISKQYGVSVYSIAAVNKNIV----DVDLVFEGQRLNIPS 47 (261)
Q Consensus 7 GDTL~sIAkrYgVSv~~I~~~NP~I~----~~d~L~pGQ~L~IP~ 47 (261)
.++||..|.+.|++...+.+++ +|- +-..|++|+.+.|..
T Consensus 117 ~~Sl~~a~~~agl~~~~~~~l~-~i~~~~idf~~l~~GD~f~v~~ 160 (371)
T 3slu_A 117 KTSARGSLARAEVPVEIRESLS-GIFAGRFSLDGLKEGDAVRLIY 160 (371)
T ss_dssp SSCHHHHHHHTTCCHHHHHHHH-HHHTTTCCTTCCCTTCEEEEEE
T ss_pred eccHHHHHHHcCCCHHHHHHHH-HHHccCcCHHHcCCCCEEEEEE
Confidence 7899999999999988766666 332 223589999999974
No 26
>2lnh_A N-WAsp, neural wiskott-aldrich syndrome protein; protein complex, signaling protein-protein binding complex; NMR {Homo sapiens}
Probab=20.19 E-value=25 Score=25.33 Aligned_cols=20 Identities=20% Similarity=0.579 Sum_probs=16.8
Q ss_pred HhhhHHHHHHHHHHhCCCCc
Q 024853 233 YRKLEDDYEKFLSECGMSKW 252 (261)
Q Consensus 233 y~~le~~y~~fl~~~g~s~~ 252 (261)
+..|-++.++||..+|||+.
T Consensus 20 ~~glp~eW~~ll~~sGIs~~ 39 (65)
T 2lnh_A 20 LNNLDPELKNLFDMCGISEA 39 (65)
T ss_dssp GGGCCTTHHHHHHHHTCCHH
T ss_pred CcCCCHHHHHHHHHcCCCHH
Confidence 45678889999999999963
Done!