Query 024854
Match_columns 261
No_of_seqs 195 out of 579
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 15:33:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024854.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024854hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3chm_A COP9 signalosome comple 100.0 7E-51 2.4E-55 346.7 14.4 168 2-169 2-169 (169)
2 4b4t_O 26S proteasome regulato 100.0 1.1E-34 3.9E-39 274.5 7.0 170 22-193 210-389 (393)
3 3txn_A 26S proteasome regulato 99.3 4.6E-12 1.6E-16 120.2 11.5 159 24-187 221-389 (394)
4 4b4t_P 26S proteasome regulato 98.9 6.3E-09 2.1E-13 99.5 9.3 162 24-198 259-436 (445)
5 4b4t_R RPN7, 26S proteasome re 98.6 2.1E-07 7.1E-12 88.3 11.2 135 25-161 249-397 (429)
6 3t5x_A PCI domain-containing p 98.5 7.4E-08 2.5E-12 83.3 3.8 97 60-157 81-193 (203)
7 4b4t_Q 26S proteasome regulato 98.3 5.9E-07 2E-11 81.2 6.0 125 58-194 295-429 (434)
8 1ufm_A COP9 complex subunit 4; 98.1 8.6E-06 2.9E-10 61.2 7.1 61 94-156 15-75 (84)
9 4b4t_S RPN3, 26S proteasome re 97.6 6.7E-05 2.3E-09 73.3 5.8 94 60-154 343-445 (523)
10 3t5v_B Nuclear mRNA export pro 97.5 3.1E-05 1.1E-09 74.5 2.4 95 62-157 299-429 (455)
11 4b0z_A RPN12, 26S proteasome r 93.0 0.15 5.1E-06 44.2 6.0 100 34-134 108-214 (229)
12 1wi9_A Protein C20ORF116 homol 92.4 0.15 5.2E-06 36.9 4.3 54 100-155 12-65 (72)
13 2hzt_A Putative HTH-type trans 84.5 7.5 0.00026 28.8 9.1 69 107-180 25-94 (107)
14 1qbj_A Protein (double-strande 83.2 3.4 0.00012 30.0 6.4 59 94-155 12-70 (81)
15 3df8_A Possible HXLR family tr 82.0 6.2 0.00021 29.7 7.8 80 93-182 26-107 (111)
16 3r0a_A Putative transcriptiona 81.6 2.8 9.7E-05 32.2 5.8 82 102-188 34-118 (123)
17 1i1g_A Transcriptional regulat 81.5 1 3.5E-05 34.9 3.2 71 106-178 15-88 (141)
18 1qgp_A Protein (double strande 81.0 3.8 0.00013 29.3 5.9 48 96-145 18-65 (77)
19 1ub9_A Hypothetical protein PH 77.4 10 0.00035 26.8 7.4 39 107-147 28-66 (100)
20 2d1h_A ST1889, 109AA long hypo 75.8 15 0.00051 26.1 8.0 73 103-182 30-105 (109)
21 4a5n_A Uncharacterized HTH-typ 75.5 26 0.00088 27.4 9.8 76 96-180 28-106 (131)
22 2cg4_A Regulatory protein ASNC 74.6 3.9 0.00013 32.1 4.8 47 100-148 13-62 (152)
23 2kko_A Possible transcriptiona 73.9 15 0.00051 27.2 7.8 63 108-180 37-99 (108)
24 2dbb_A Putative HTH-type trans 73.8 3.7 0.00013 32.2 4.5 47 100-148 14-63 (151)
25 4b4t_T 26S proteasome regulato 72.9 7.6 0.00026 34.4 6.7 95 38-132 118-222 (274)
26 2cfx_A HTH-type transcriptiona 72.8 3.5 0.00012 32.3 4.0 47 100-148 10-59 (144)
27 2p5v_A Transcriptional regulat 72.6 3.6 0.00012 32.8 4.2 42 105-148 20-64 (162)
28 2pn6_A ST1022, 150AA long hypo 72.2 8.6 0.00029 29.9 6.3 48 99-148 7-57 (150)
29 3t8r_A Staphylococcus aureus C 72.0 6.2 0.00021 31.2 5.4 57 95-154 14-70 (143)
30 2ia0_A Putative HTH-type trans 71.3 3.8 0.00013 33.3 4.1 42 105-148 27-71 (171)
31 3lwf_A LIN1550 protein, putati 71.0 8.1 0.00028 31.4 6.0 64 87-153 22-85 (159)
32 1yyv_A Putative transcriptiona 70.9 20 0.00067 27.8 8.1 79 94-179 35-114 (131)
33 2fsw_A PG_0823 protein; alpha- 70.5 18 0.00063 26.5 7.5 66 107-179 36-104 (107)
34 2e1c_A Putative HTH-type trans 70.1 2.7 9.3E-05 34.3 2.9 67 105-177 37-110 (171)
35 2oqg_A Possible transcriptiona 69.7 29 0.00099 25.2 9.7 37 108-146 33-69 (114)
36 2gxg_A 146AA long hypothetical 68.9 23 0.00078 26.5 8.0 43 107-151 48-90 (146)
37 3bpv_A Transcriptional regulat 68.8 29 0.001 25.6 8.5 46 107-154 41-86 (138)
38 3cuo_A Uncharacterized HTH-typ 68.7 16 0.00053 25.8 6.6 63 105-177 34-96 (99)
39 1lj9_A Transcriptional regulat 68.5 27 0.00092 26.1 8.3 42 108-151 42-83 (144)
40 1z7u_A Hypothetical protein EF 68.2 34 0.0012 25.3 9.0 68 108-180 34-102 (112)
41 2cyy_A Putative HTH-type trans 68.0 3.1 0.0001 32.8 2.7 43 100-144 12-54 (151)
42 2y75_A HTH-type transcriptiona 67.2 16 0.00054 27.8 6.7 49 94-144 11-59 (129)
43 3i4p_A Transcriptional regulat 66.3 5.7 0.00019 31.8 4.1 48 99-148 7-57 (162)
44 3g3z_A NMB1585, transcriptiona 66.2 27 0.00091 26.3 7.9 41 109-151 45-85 (145)
45 3f6o_A Probable transcriptiona 64.1 19 0.00066 26.9 6.6 38 108-147 30-67 (118)
46 1oyi_A Double-stranded RNA-bin 63.7 12 0.0004 27.5 4.9 46 92-143 17-62 (82)
47 2a61_A Transcriptional regulat 62.3 13 0.00044 28.0 5.3 46 107-154 45-90 (145)
48 3kp7_A Transcriptional regulat 61.1 13 0.00044 28.4 5.2 44 106-151 48-93 (151)
49 4aik_A Transcriptional regulat 60.8 30 0.001 26.9 7.4 64 87-157 29-92 (151)
50 1ylf_A RRF2 family protein; st 60.7 13 0.00044 29.3 5.2 48 95-145 17-64 (149)
51 2fbh_A Transcriptional regulat 60.6 28 0.00094 26.0 7.0 44 106-151 49-92 (146)
52 3jth_A Transcription activator 59.4 29 0.00099 24.7 6.6 39 108-148 35-73 (98)
53 4hbl_A Transcriptional regulat 59.0 23 0.00077 27.1 6.3 43 107-151 53-95 (149)
54 2v79_A DNA replication protein 58.2 54 0.0018 25.6 8.4 72 96-179 37-111 (135)
55 1sfx_A Conserved hypothetical 57.6 46 0.0016 23.3 8.6 39 107-147 32-70 (109)
56 2f2e_A PA1607; transcription f 57.5 36 0.0012 26.6 7.3 42 107-150 35-76 (146)
57 3deu_A Transcriptional regulat 56.7 29 0.00099 27.2 6.7 49 104-154 63-111 (166)
58 2heo_A Z-DNA binding protein 1 56.6 17 0.00058 24.8 4.6 45 95-143 13-57 (67)
59 1xd7_A YWNA; structural genomi 56.6 18 0.00063 28.3 5.4 34 111-146 25-58 (145)
60 1xn7_A Hypothetical protein YH 55.7 13 0.00045 26.6 4.0 42 99-142 6-47 (78)
61 2vn2_A DNAD, chromosome replic 55.4 25 0.00085 27.0 5.9 81 87-179 30-111 (128)
62 3k0l_A Repressor protein; heli 54.6 43 0.0015 25.8 7.3 46 108-155 59-104 (162)
63 3k69_A Putative transcription 54.0 20 0.00068 28.9 5.3 55 95-153 15-69 (162)
64 2htj_A P fimbrial regulatory p 53.8 31 0.0011 23.9 5.7 36 107-144 12-47 (81)
65 1uly_A Hypothetical protein PH 53.4 93 0.0032 25.5 11.9 35 108-144 32-66 (192)
66 2eth_A Transcriptional regulat 53.3 36 0.0012 25.9 6.6 42 108-151 57-98 (154)
67 3nrv_A Putative transcriptiona 53.0 25 0.00087 26.5 5.6 43 107-151 52-94 (148)
68 3s2w_A Transcriptional regulat 52.6 23 0.00078 27.3 5.3 46 107-154 62-107 (159)
69 3oop_A LIN2960 protein; protei 52.6 20 0.00069 27.0 4.9 42 108-151 50-91 (143)
70 3cjn_A Transcriptional regulat 51.5 49 0.0017 25.3 7.1 43 107-151 64-106 (162)
71 3bja_A Transcriptional regulat 51.5 20 0.00069 26.5 4.7 43 107-151 45-87 (139)
72 3hsr_A HTH-type transcriptiona 49.6 37 0.0013 25.5 6.0 46 106-153 47-92 (140)
73 2rdp_A Putative transcriptiona 49.3 31 0.0011 25.9 5.6 43 108-152 55-97 (150)
74 2w25_A Probable transcriptiona 48.9 21 0.00073 27.6 4.6 37 106-144 18-54 (150)
75 3pqk_A Biofilm growth-associat 47.6 54 0.0018 23.4 6.4 40 108-149 35-74 (102)
76 2k02_A Ferrous iron transport 47.5 14 0.00049 27.2 3.1 44 99-144 6-49 (87)
77 2jt1_A PEFI protein; solution 47.4 15 0.00052 26.3 3.2 34 107-142 22-55 (77)
78 3eco_A MEPR; mutlidrug efflux 46.7 49 0.0017 24.5 6.3 44 108-153 46-89 (139)
79 2p4w_A Transcriptional regulat 46.5 1.2E+02 0.0043 25.0 13.6 38 108-147 27-64 (202)
80 1s3j_A YUSO protein; structura 45.8 36 0.0012 25.7 5.4 42 107-150 49-90 (155)
81 1u2w_A CADC repressor, cadmium 45.6 28 0.00096 26.2 4.7 38 107-146 54-91 (122)
82 2pg4_A Uncharacterized protein 45.2 32 0.0011 24.4 4.7 45 96-142 16-62 (95)
83 2fbi_A Probable transcriptiona 44.9 86 0.003 23.0 7.5 45 108-154 49-93 (142)
84 1j5y_A Transcriptional regulat 44.5 43 0.0015 27.2 6.0 50 92-143 18-69 (187)
85 3bj6_A Transcriptional regulat 44.2 73 0.0025 23.8 7.0 41 108-150 53-93 (152)
86 1r1u_A CZRA, repressor protein 43.6 39 0.0013 24.6 5.1 38 108-147 38-75 (106)
87 2nnn_A Probable transcriptiona 43.5 50 0.0017 24.3 5.9 44 108-153 51-94 (140)
88 3gpv_A Transcriptional regulat 42.6 92 0.0031 24.5 7.5 97 109-220 16-132 (148)
89 2fa5_A Transcriptional regulat 42.2 32 0.0011 26.3 4.7 43 107-151 61-103 (162)
90 3boq_A Transcriptional regulat 41.9 32 0.0011 26.3 4.6 45 105-151 58-102 (160)
91 1ku9_A Hypothetical protein MJ 41.5 1E+02 0.0035 22.6 10.6 55 97-155 31-86 (152)
92 3tgn_A ADC operon repressor AD 39.3 38 0.0013 25.3 4.6 43 110-154 52-94 (146)
93 3f6v_A Possible transcriptiona 38.9 82 0.0028 24.8 6.7 61 107-177 69-129 (151)
94 1tbx_A ORF F-93, hypothetical 37.6 1E+02 0.0036 21.6 6.6 45 107-153 20-68 (99)
95 1z91_A Organic hydroperoxide r 37.4 37 0.0013 25.4 4.3 40 108-149 53-92 (147)
96 1z05_A Transcriptional regulat 37.2 33 0.0011 31.5 4.6 72 71-144 13-86 (429)
97 2hr3_A Probable transcriptiona 37.0 85 0.0029 23.3 6.3 43 107-151 48-90 (147)
98 1jgs_A Multiple antibiotic res 36.8 65 0.0022 23.7 5.5 44 108-153 47-90 (138)
99 2x4h_A Hypothetical protein SS 36.3 1.3E+02 0.0045 22.3 12.1 55 86-144 10-64 (139)
100 3gp4_A Transcriptional regulat 35.5 1E+02 0.0034 24.1 6.6 28 110-143 3-30 (142)
101 1rz4_A Eukaryotic translation 35.3 2.1E+02 0.0071 24.3 9.5 78 56-134 96-176 (226)
102 2pex_A Transcriptional regulat 34.8 87 0.003 23.5 6.1 43 107-151 59-101 (153)
103 2p7v_B Sigma-70, RNA polymeras 34.0 40 0.0014 22.4 3.5 28 107-136 23-50 (68)
104 3bro_A Transcriptional regulat 33.9 1.4E+02 0.0047 21.8 7.0 41 109-151 50-90 (141)
105 3bdd_A Regulatory protein MARR 33.6 62 0.0021 23.8 4.9 42 108-151 44-85 (142)
106 1y0u_A Arsenical resistance op 31.7 69 0.0024 22.6 4.7 35 108-144 42-76 (96)
107 1tc3_C Protein (TC3 transposas 31.6 37 0.0013 20.0 2.8 22 110-132 22-43 (51)
108 3fm5_A Transcriptional regulat 31.5 65 0.0022 24.3 4.8 49 103-153 48-96 (150)
109 1ku3_A Sigma factor SIGA; heli 31.2 51 0.0017 22.2 3.7 28 107-136 28-55 (73)
110 3cdh_A Transcriptional regulat 30.6 1.7E+02 0.0058 21.9 7.6 44 106-151 54-97 (155)
111 2nyx_A Probable transcriptiona 30.5 1.1E+02 0.0036 23.7 6.1 43 108-152 58-100 (168)
112 2jsc_A Transcriptional regulat 29.9 84 0.0029 23.3 5.1 38 108-147 33-70 (118)
113 2k6x_A Sigma-A, RNA polymerase 29.9 32 0.0011 24.0 2.5 40 100-140 14-57 (72)
114 3t5v_A Nuclear mRNA export pro 29.5 64 0.0022 29.0 5.0 61 72-132 177-247 (316)
115 1q1h_A TFE, transcription fact 29.1 43 0.0015 24.3 3.3 37 106-144 30-66 (110)
116 3u2r_A Regulatory protein MARR 28.8 1.9E+02 0.0066 22.0 8.1 49 107-157 60-108 (168)
117 3c57_A Two component transcrip 28.4 64 0.0022 23.1 4.1 27 108-136 41-67 (95)
118 3f3x_A Transcriptional regulat 28.1 1.6E+02 0.0055 21.7 6.5 44 111-156 52-95 (144)
119 3ech_A MEXR, multidrug resista 28.0 44 0.0015 25.0 3.2 44 108-153 50-93 (142)
120 1tty_A Sigma-A, RNA polymerase 27.9 61 0.0021 22.7 3.8 29 106-136 35-63 (87)
121 3hug_A RNA polymerase sigma fa 27.9 50 0.0017 23.3 3.3 27 108-136 52-78 (92)
122 3e6m_A MARR family transcripti 27.8 36 0.0012 26.2 2.8 42 108-151 66-107 (161)
123 2qlz_A Transcription factor PF 26.8 69 0.0024 27.4 4.6 45 106-155 175-219 (232)
124 4g9j_C Synthetic peptide, seri 26.7 18 0.00061 20.4 0.5 9 248-256 2-10 (26)
125 2qvo_A Uncharacterized protein 26.7 1.3E+02 0.0045 21.1 5.5 48 106-155 27-74 (95)
126 3t72_q RNA polymerase sigma fa 26.0 61 0.0021 24.0 3.6 28 107-136 37-64 (99)
127 1r1t_A Transcriptional repress 24.9 1.7E+02 0.0057 21.9 6.1 37 108-146 58-94 (122)
128 3kor_A Possible Trp repressor; 24.9 1E+02 0.0035 24.0 4.7 37 98-139 66-102 (119)
129 1on2_A Transcriptional regulat 24.4 1E+02 0.0035 23.0 4.8 43 100-144 13-55 (142)
130 1txp_A HnRNP C, heterogeneous 24.0 1E+02 0.0034 18.0 3.4 23 168-190 2-24 (28)
131 2wte_A CSA3; antiviral protein 23.6 1.1E+02 0.0036 26.3 5.2 45 107-155 164-208 (244)
132 2bv6_A MGRA, HTH-type transcri 23.5 1E+02 0.0035 22.7 4.6 43 107-151 49-91 (142)
133 1eij_A Hypothetical protein MT 22.9 33 0.0011 25.0 1.5 22 125-147 37-58 (80)
134 2l16_A SEC-independent protein 22.9 59 0.002 23.4 2.8 31 161-191 20-50 (78)
135 2o8x_A Probable RNA polymerase 22.2 1.6E+02 0.0056 18.8 6.5 26 109-136 31-56 (70)
136 1je8_A Nitrate/nitrite respons 22.1 1.2E+02 0.0041 21.0 4.4 26 109-136 36-61 (82)
137 4i0x_B ESAT-6-like protein MAB 21.9 2.3E+02 0.0077 20.4 6.5 59 162-220 11-76 (103)
138 3ulq_B Transcriptional regulat 21.8 1E+02 0.0035 22.0 4.1 40 84-132 27-66 (90)
139 3nqo_A MARR-family transcripti 21.4 1.8E+02 0.0063 23.0 6.0 64 86-156 38-102 (189)
140 2lfw_A PHYR sigma-like domain; 21.2 66 0.0023 24.9 3.1 27 108-136 108-134 (157)
141 2fh0_A Hypothetical 16.0 kDa p 21.2 35 0.0012 24.9 1.3 23 124-147 34-56 (81)
142 2frh_A SARA, staphylococcal ac 21.0 89 0.0031 23.2 3.7 45 107-153 51-95 (127)
143 2qww_A Transcriptional regulat 20.7 1E+02 0.0036 23.0 4.2 42 108-151 54-97 (154)
144 2jpc_A SSRB; DNA binding prote 20.7 86 0.0029 19.9 3.2 23 109-132 13-35 (61)
145 2w48_A Sorbitol operon regulat 20.6 1.4E+02 0.0048 26.0 5.5 51 95-147 7-57 (315)
No 1
>3chm_A COP9 signalosome complex subunit 7; heat/ARM repeats, winged helix motif, developmental protein, phosphoprotein; 1.50A {Arabidopsis thaliana}
Probab=100.00 E-value=7e-51 Score=346.68 Aligned_cols=168 Identities=79% Similarity=1.223 Sum_probs=158.8
Q ss_pred chhHHHHHHHHHHHHhcccccHHHHHHHHHHHhcCCCcccchhhhcCchhhhccCCCchHHHHHHHHHhcCChhhHhhhh
Q 024854 2 DIEQRQAELIDHFVKQASNQKGAALGSVIVEATSQPSLFAFSEILAVPNIAEFEGTENSKYLDMLRLFAHGTWSDYKNNA 81 (261)
Q Consensus 2 ~~~~~~~~~l~~fl~lak~a~~~aa~~lI~~AL~~p~vy~F~eLL~lp~v~~L~~~~~~~~~~LL~iFa~Gt~~dy~~~~ 81 (261)
++|+++.+.||||+.+||++++++|+++|.+||.+|++|+|||||.+|+|++|++++++|+++||++|++|||.+|.+++
T Consensus 2 ~~~~~~~~~l~~f~~la~~~~~~~a~~li~~Al~~p~vf~F~eLL~~p~v~~L~~~~~~~~~~LL~iF~~G~~~~y~~~~ 81 (169)
T 3chm_A 2 DIEQKQAEIIDQLVKRASTCKSEALGPLIIEATSHPSLFAFSEILALPNVAQLEGTTDSVYLDLLRLFAHGTWGDYKCNA 81 (169)
T ss_dssp --CCCHHHHHHHHHHHHTTSCGGGHHHHHHHHHHCTTCCCCHHHHTCHHHHTTTTSTTHHHHHHHHHHHHCCHHHHHHHG
T ss_pred chhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhcCCCeeehHHHhCChHHHHhcCCChhHHHHHHHHHhcCCHHHHHHhH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcchHHHHHHHHHHhhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCceEEEecCCCCEEEEEeecCCC
Q 024854 82 GHLPQLVPDQVLKLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFAAGRD 161 (261)
Q Consensus 82 ~~l~~L~~~~~~KLr~LTllsLa~~~k~Isy~~I~~~L~I~~~~evE~lvI~eAI~~gLI~GkIDQ~~~~v~V~~~~~Rd 161 (261)
+.+|.|++.+.+|||+|||++||..+++|||++|+++|+|+|+++||+||||+||+.|||+|||||++++|+|+|++||+
T Consensus 82 ~~~p~L~~~~~~KlrlLtL~sLa~~~~~lsy~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkiDQ~~~~v~V~~~~~R~ 161 (169)
T 3chm_A 82 TRLPHLSPDQILKLKQLTVLTLAESNKVLPYDTLMVELDVSNVRELEDFLINECMYAGIVRGKLDQLKRCFEVPFAAGRD 161 (169)
T ss_dssp GGSCCCCHHHHHHHHHHHHHHHHHHCSEEEHHHHHHHHTCCSHHHHHHHHHHTHHHHTSEEEEEETTTTEEEEEEECCTT
T ss_pred HhCcchHHHHHHHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCHHHHHHHHHHHHHHhCCeEEEEcCcCCEEEEEeecCCc
Confidence 89999999999999999999999999999999999999999999999999988999999999999999999999999999
Q ss_pred CCCCcHHH
Q 024854 162 LRPGQLGS 169 (261)
Q Consensus 162 l~~~q~~~ 169 (261)
|+++||++
T Consensus 162 l~~~qi~~ 169 (169)
T 3chm_A 162 LRPGQLGN 169 (169)
T ss_dssp CCC-----
T ss_pred cCHHhccC
Confidence 99999964
No 2
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-34 Score=274.55 Aligned_cols=170 Identities=14% Similarity=0.320 Sum_probs=118.5
Q ss_pred cHHHHHHHHHHHhcCCCcccchhhhcCchhhhccC-CCchHHHHHHHHHhcCChhhHhh----hhCCCCCcchH---HHH
Q 024854 22 KGAALGSVIVEATSQPSLFAFSEILAVPNIAEFEG-TENSKYLDMLRLFAHGTWSDYKN----NAGHLPQLVPD---QVL 93 (261)
Q Consensus 22 ~~~aa~~lI~~AL~~p~vy~F~eLL~lp~v~~L~~-~~~~~~~~LL~iFa~Gt~~dy~~----~~~~l~~L~~~---~~~ 93 (261)
+...++.++..||.+|++|+||+||.+|.+++|++ +++.|+++||++|++||+.+|.+ +.+.+|.|.+. ..+
T Consensus 210 ~~~~a~~l~~~all~~~i~~f~eLL~~p~i~~L~~~~~~~~l~~Ll~~f~~g~~~~f~~~~~~~~~~~~~l~~~~~~l~~ 289 (393)
T 4b4t_O 210 RQQLAYDLSISALLGDKIYNFGELLHHPIMETIVNDSNYDWLFQLLNALTVGDFDKFDSLIKVQISKIPILAQHESFLRQ 289 (393)
T ss_dssp HHHHHHHHHHHHHHCCSSCSTHHHHHSCCTTSSCSSSSTTHHHHHHHHHHHTCHHHHHHHCCHHHHHSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCChHHHhCChHHHHhhcCCchHHHHHHHHHHhcCCHHHHHHHHHHhhhhCcchhhhHHHHHH
Confidence 34579999999999999999999999999999975 57999999999999999999976 44566766644 478
Q ss_pred HHHHHHhhhccc--CCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCceEEEecCCCCEEEEEeecCCCCCCCcHHHHH
Q 024854 94 KLKQLTVLTLAE--TNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFAAGRDLRPGQLGSMI 171 (261)
Q Consensus 94 KLr~LTllsLa~--~~k~Isy~~I~~~L~I~~~~evE~lvI~eAI~~gLI~GkIDQ~~~~v~V~~~~~Rdl~~~q~~~L~ 171 (261)
|+|.+++++|+. .++.|||++|+++|+|+ +++||+||| +||+.|+|+|+|||++++|+|+|++||+|+++||..|.
T Consensus 290 kirll~l~~l~~~~~~~~i~f~~ia~~l~i~-~~evE~lli-~aI~~glI~GkIDQv~~~v~v~~~~pR~~~~~q~~~l~ 367 (393)
T 4b4t_O 290 KICLMTLIETVFVKNIRMLSFEDISKATHLP-KDNVEHLVM-RAISLGLLKGSIDQVNELVTISWVQPRIISGDQITKMK 367 (393)
T ss_dssp HHHHHHHHHHHCSSSCCCEEHHHHHHHHTCC-HHHHHHHHH-HHHHHSCSSSCEETTTTEECC-----------------
T ss_pred HHHHHHHHHHhccCCCCcCcHHHHHHHhCcC-HHHHHHHHH-HHHHcCCEEEEEcCCCCEEEEEeccCCCCCHHHHHHHH
Confidence 999999999884 57899999999999997 999999999 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024854 172 QTLSNWLTTSDNLLISIQEKIK 193 (261)
Q Consensus 172 ~~L~~W~~~~~~~l~~ie~~i~ 193 (261)
++|..|+++|++++..|+++.+
T Consensus 368 ~~L~~W~~~v~~l~~~ve~~~~ 389 (393)
T 4b4t_O 368 DRLVEWNDQVEKLGKKMEARGQ 389 (393)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999998754
No 3
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=99.34 E-value=4.6e-12 Score=120.16 Aligned_cols=159 Identities=11% Similarity=0.109 Sum_probs=111.7
Q ss_pred HHHHHHHHHHhcCCCcccchhhhcCchhhhccCCCchHHHHHHHHHhcCChhhHhhh----hCCCCC---cc---hHHHH
Q 024854 24 AALGSVIVEATSQPSLFAFSEILAVPNIAEFEGTENSKYLDMLRLFAHGTWSDYKNN----AGHLPQ---LV---PDQVL 93 (261)
Q Consensus 24 ~aa~~lI~~AL~~p~vy~F~eLL~lp~v~~L~~~~~~~~~~LL~iFa~Gt~~dy~~~----~~~l~~---L~---~~~~~ 93 (261)
..+.-++..+|..-+.+.+++++..|......+++..|+.+|+..|.+|++..|... .+.+.. +. ....+
T Consensus 221 ~~lkYlvL~aLl~~~r~el~~~l~~~~~~~~~~pei~~l~~L~~a~~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~ 300 (394)
T 3txn_A 221 TSLKYMLLCKIMLGQSDDVNQLVSGKLAITYSGRDIDAMKSVAEASHKRSLADFQAALKEYKKELAEDVIVQAHLGTLYD 300 (394)
T ss_dssp HHHHHHHHHHHHTTCGGGHHHHHHSHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHhccccccccCCccHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 356668888888888999999999887666666668899999999999999999763 222221 11 23467
Q ss_pred HHHHHHhhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCceEEEecCCCCEEEEEeecCCCCCCCcHHHHHHH
Q 024854 94 KLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFAAGRDLRPGQLGSMIQT 173 (261)
Q Consensus 94 KLr~LTllsLa~~~k~Isy~~I~~~L~I~~~~evE~lvI~eAI~~gLI~GkIDQ~~~~v~V~~~~~Rdl~~~q~~~L~~~ 173 (261)
+++...++.+....+.|+++.|++.++++ ++++|.+|+ ++|..|.|.|+|||++++|++....+|+ ...+...+.
T Consensus 301 ~Ir~~~L~~i~~pYsrIsl~~iA~~l~ls-~~evE~~L~-~lI~dg~I~a~IDq~~giv~~~~~~~r~---~~y~~ale~ 375 (394)
T 3txn_A 301 TMLEQNLCRIIEPYSRVQVAHVAESIQLP-MPQVEKKLS-QMILDKKFSGILDQGEGVLIVFEETPVD---KTYERVLET 375 (394)
T ss_dssp HHHHHHHHHHHTTCSEEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSSCEEEETTTTEEEECCC----------------
T ss_pred HHHHHHHHHHhHhhceeeHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeeEEEcCCCCEEEECCCcchh---hHHHHHHHH
Confidence 88889999999999999999999999996 999999999 9999999999999999999998765554 345556788
Q ss_pred HHHHHHHHHHHHHH
Q 024854 174 LSNWLTTSDNLLIS 187 (261)
Q Consensus 174 L~~W~~~~~~~l~~ 187 (261)
+.+|...++.++..
T Consensus 376 l~~ls~vVd~L~~~ 389 (394)
T 3txn_A 376 IQSMGKVVDTLYQK 389 (394)
T ss_dssp --------------
T ss_pred HHHHHHHHHHHHHH
Confidence 99999988877653
No 4
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.85 E-value=6.3e-09 Score=99.46 Aligned_cols=162 Identities=14% Similarity=0.148 Sum_probs=98.1
Q ss_pred HHHHHHHHHHhcCCCcccchhhhcCchhhhccCCCchHHHHHHHHHhcCChhhHhh----hhCCCC---Cc-----c---
Q 024854 24 AALGSVIVEATSQPSLFAFSEILAVPNIAEFEGTENSKYLDMLRLFAHGTWSDYKN----NAGHLP---QL-----V--- 88 (261)
Q Consensus 24 ~aa~~lI~~AL~~p~vy~F~eLL~lp~v~~L~~~~~~~~~~LL~iFa~Gt~~dy~~----~~~~l~---~L-----~--- 88 (261)
.+..-+|...+.+|..-.++.++.-+.... ...+...+..|+.+|..+.+..|.. +...+. .. .
T Consensus 259 ~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~-~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~~~~~~~~~~~~~~ 337 (445)
T 4b4t_P 259 PVLSHIVYFLVLSPYGNLQNDLIHKIQNDN-NLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLNEDDLAFGGEANKHH 337 (445)
T ss_dssp HHHHHHHHHHHHSSCSSTTHHHHHSHHHHS-SCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTTCCSSCCCSCSSHH
T ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHhhcc-cccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhcccchhhhcchhhHH
Confidence 356667788888998888888886543221 1124567899999999999887764 222111 11 1
Q ss_pred -hHHHHHHHHHHhhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCceEEEecCCCCEEEEEeecCCCCCCCcH
Q 024854 89 -PDQVLKLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFAAGRDLRPGQL 167 (261)
Q Consensus 89 -~~~~~KLr~LTllsLa~~~k~Isy~~I~~~L~I~~~~evE~lvI~eAI~~gLI~GkIDQ~~~~v~V~~~~~Rdl~~~q~ 167 (261)
......++...|..++...+.|+++.|++.|+++ ++++|.++. ++|..|.|.|+|||++|.|++....+
T Consensus 338 ~~~L~~~v~ehnl~~i~k~Ys~I~l~~la~lL~l~-~~evE~~ls-~mI~~g~i~akIDq~~giV~F~~~~~-------- 407 (445)
T 4b4t_P 338 WEDLQKRVIEHNLRVISEYYSRITLLRLNELLDLT-ESQTETYIS-DLVNQGIIYAKVNRPAKIVNFEKPKN-------- 407 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHEEEEEHHHHHHHHTSC-HHHHHHHHH-HHHHHTSSCCEEETTTTEEEC-------------
T ss_pred HHHHHHHHHHHHHHHHHHHhceeeHHHHHHHhCcC-HHHHHHHHH-HHHHCCCEEEEEcCCCCEEEECCCCC--------
Confidence 2345666777888888999999999999999998 999999999 99999999999999999887554321
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024854 168 GSMIQTLSNWLTTSDNLLISIQEKIKWADSM 198 (261)
Q Consensus 168 ~~L~~~L~~W~~~~~~~l~~ie~~i~~a~~~ 198 (261)
-.+.|..|.+++++++..|+.-.+-++++
T Consensus 408 --~~~~l~~W~~~i~~l~~~v~k~~~lI~kE 436 (445)
T 4b4t_P 408 --SSQLLNEWSHNVDELLEHIETIGHLITKE 436 (445)
T ss_dssp -------------------------------
T ss_pred --hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23579999999999999997665555543
No 5
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.60 E-value=2.1e-07 Score=88.29 Aligned_cols=135 Identities=14% Similarity=0.122 Sum_probs=97.0
Q ss_pred HHHHHHHHHhcCCCcccc-hhhhcCchhhhcc-CCC-chHHHHHHHHHhcCChhhHhhh-----hCCC---CCc---chH
Q 024854 25 ALGSVIVEATSQPSLFAF-SEILAVPNIAEFE-GTE-NSKYLDMLRLFAHGTWSDYKNN-----AGHL---PQL---VPD 90 (261)
Q Consensus 25 aa~~lI~~AL~~p~vy~F-~eLL~lp~v~~L~-~~~-~~~~~~LL~iFa~Gt~~dy~~~-----~~~l---~~L---~~~ 90 (261)
.+.-.+..++..++--.+ ..++.-|.+...- ..| ..++.+++..|-.+.+..|... ...+ +-+ ...
T Consensus 249 ~~~y~~l~al~~~~r~~l~~~v~~~~~~~~~l~~~p~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~d~~l~~h~~~ 328 (429)
T 4b4t_R 249 IATYASVTGLFTLERTDLKSKVIDSPELLSLISTTAALQSISSLTISLYASDYASYFPYLLETYANVLIPCKYLNRHADF 328 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHSSSSSHHHHHGGGSHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHSTTTTTCTTSTTTHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCHHHHhhccCChhHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhccCHHHHHHHHH
Confidence 345555555555544332 2355566655433 222 4567788888888988886531 1111 112 245
Q ss_pred HHHHHHHHHhhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCceEEEecCCCCEEEEEeecCCC
Q 024854 91 QVLKLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFAAGRD 161 (261)
Q Consensus 91 ~~~KLr~LTllsLa~~~k~Isy~~I~~~L~I~~~~evE~lvI~eAI~~gLI~GkIDQ~~~~v~V~~~~~Rd 161 (261)
..+.+|...++.++...+.|+++.+++.++++ +.++|.++. +.|..|-|.|+|||++|+|+.....+|.
T Consensus 329 l~~~ir~~~l~q~~~~Ys~I~l~~mA~~l~~s-~~~~E~~L~-~lI~~g~l~akID~~~giv~~~~~d~~~ 397 (429)
T 4b4t_R 329 FVREMRRKVYAQLLESYKTLSLKSMASAFGVS-VAFLDNDLG-KFIPNKQLNCVIDRVNGIVETNRPDNKN 397 (429)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEHHHHHHHHTSC-HHHHHHHHH-HHHHHTSSCEEEETTTTEEEECC-----
T ss_pred HHHHHHHHHHHHHhHHhceeeHHHHHHHhCcC-HHHHHHHHH-HHHHcCCeEEEEcCCCCEEEECCCCchh
Confidence 68999999999999999999999999999998 999999999 9999999999999999999988766664
No 6
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=98.46 E-value=7.4e-08 Score=83.33 Aligned_cols=97 Identities=18% Similarity=0.249 Sum_probs=76.8
Q ss_pred hHHHHHHHHHhcCChhhHhhh----hCCCCC-cchHHHHHHHHHHhhhccc------CCcccChHHHHHHcCCC-----C
Q 024854 60 SKYLDMLRLFAHGTWSDYKNN----AGHLPQ-LVPDQVLKLKQLTVLTLAE------TNKVLPYDELMEELDVT-----N 123 (261)
Q Consensus 60 ~~~~~LL~iFa~Gt~~dy~~~----~~~l~~-L~~~~~~KLr~LTllsLa~------~~k~Isy~~I~~~L~I~-----~ 123 (261)
..+.+|...+..||+..|.+. .+.+-. -.-..+.|+|.+.+..|.. ....||+++|+.+|++. +
T Consensus 81 ~~y~~L~~Avr~Gdl~~f~~~l~~~~~~f~~~~~~lll~rlr~~v~r~l~rkv~~~~~~~rI~l~~i~~~l~~~~~~~~~ 160 (203)
T 3t5x_A 81 MQFAEVTRAVSEGNLLLLHEALAKHEAFFIRCGIFLILEKLKIITYRNLFKKVYLLLKTHQLSLDAFLVALKFMQVEDVD 160 (203)
T ss_dssp GGGHHHHHHHHHTCHHHHHHHHHHTHHHHHHHTCHHHHHTHHHHHHHHHHHHHHHHHCCSEEEHHHHHHHHHHTTCTTCC
T ss_pred hHHHHHHHHHHhCCHHHHHHHHHHhHHHHHHCChHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCCCCCC
Confidence 358899999999999999862 211110 0012468888888877765 57899999999999753 5
Q ss_pred hHHHHHHHHHHhHhcCceEEEecCCCCEEEEEee
Q 024854 124 VRELEDFLINECMYTGIVRGKLDQLRRCFEVQFA 157 (261)
Q Consensus 124 ~~evE~lvI~eAI~~gLI~GkIDQ~~~~v~V~~~ 157 (261)
.+|||.+|. .+|+.|.|+|+||+.++++.++..
T Consensus 161 ~~evE~ila-~lI~~G~Ikg~I~~~~~~lVlsk~ 193 (203)
T 3t5x_A 161 IDEVQCILA-NLIYMGHVKGYISHQHQKLVVSKQ 193 (203)
T ss_dssp HHHHHHHHH-HHHHHTSSCEEEETTTTEEEECSS
T ss_pred HHHHHHHHH-HHHHcCceEEEEcccccEEEECCC
Confidence 899999999 899999999999999999988753
No 7
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.31 E-value=5.9e-07 Score=81.21 Aligned_cols=125 Identities=13% Similarity=0.110 Sum_probs=79.1
Q ss_pred CchHHHHHHHHHhcCChhhHhhhhCC----CCC---c---chHHHHHHHHHHhhhcccCCcccChHHHHHHcCCCChHHH
Q 024854 58 ENSKYLDMLRLFAHGTWSDYKNNAGH----LPQ---L---VPDQVLKLKQLTVLTLAETNKVLPYDELMEELDVTNVREL 127 (261)
Q Consensus 58 ~~~~~~~LL~iFa~Gt~~dy~~~~~~----l~~---L---~~~~~~KLr~LTllsLa~~~k~Isy~~I~~~L~I~~~~ev 127 (261)
+..++..++..|..+++..|...... +.. + .......++...+..++...+.|+++.|++.|+++ +.++
T Consensus 295 ~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~y~~i~l~~la~~l~~~-~~~~ 373 (434)
T 4b4t_Q 295 GIDAMKAVAEAYNNRSLLDFNTALKQYEKELMGDELTRSHFNALYDTLLESNLCKIIEPFECVEISHISKIIGLD-TQQV 373 (434)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHTCSHHHHHHHHHHHHHHHHHHHHHHHSSCSCEEHHHHHHHHTCC-HHHH
T ss_pred hhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCcC-HHHH
Confidence 35678899999999999998863211 111 1 12345677778888899999999999999999997 9999
Q ss_pred HHHHHHHhHhcCceEEEecCCCCEEEEEeecCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024854 128 EDFLINECMYTGIVRGKLDQLRRCFEVQFAAGRDLRPGQLGSMIQTLSNWLTTSDNLLISIQEKIKW 194 (261)
Q Consensus 128 E~lvI~eAI~~gLI~GkIDQ~~~~v~V~~~~~Rdl~~~q~~~L~~~L~~W~~~~~~~l~~ie~~i~~ 194 (261)
|.+|. ++|..|.|.|+|||.+++|.+.....++ .....|.+.++++...|+....+
T Consensus 374 E~~l~-~lI~~~~i~a~id~~~g~v~~~~~~~~~----------~~~~~~l~~~~~l~~~vd~L~~k 429 (434)
T 4b4t_Q 374 EGKLS-QMILDKIFYGVLDQGNGWLYVYETPNQD----------ATYDSALELVGQLNKVVDQLFEK 429 (434)
T ss_dssp HHHHH-HHHHHTSSCCEEETTTTEEECC---------------------------------------
T ss_pred HHHHH-HHHhCCCcceecccccCeEeeCCCcchh----------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 9999999999999999999986554432 23455666666655555544433
No 8
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=98.08 E-value=8.6e-06 Score=61.17 Aligned_cols=61 Identities=15% Similarity=0.268 Sum_probs=53.3
Q ss_pred HHHHHHhhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCceEEEecCCCCEEEEEe
Q 024854 94 KLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQF 156 (261)
Q Consensus 94 KLr~LTllsLa~~~k~Isy~~I~~~L~I~~~~evE~lvI~eAI~~gLI~GkIDQ~~~~v~V~~ 156 (261)
++..-.|..+++.+..|+++.|++.++++ .+++|.+|. ++|..|-|.|+|||++++|.+..
T Consensus 15 ~v~E~nl~~is~~Y~~Isl~~La~ll~ls-~~~vE~~ls-~mI~~~~l~akIDq~~g~V~f~~ 75 (84)
T 1ufm_A 15 AVIEHNLLSASKLYNNITFEELGALLEIP-AAKAEKIAS-QMITEGRMNGFIDQIDGIVHFET 75 (84)
T ss_dssp HHHHHHHHHHHHSCSEEEHHHHHHHTTSC-HHHHHHHHH-HHHHTTSSCEEEETTTTEEEECC
T ss_pred HHHHHHHHHHHHhcCeeeHHHHHHHHCcC-HHHHHHHHH-HHHhCCcEEEEEeCCCCEEEeCC
Confidence 34444555677789999999999999998 999999999 99999999999999999998654
No 9
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.57 E-value=6.7e-05 Score=73.33 Aligned_cols=94 Identities=12% Similarity=0.233 Sum_probs=71.2
Q ss_pred hHHHHHHHHHhcCChhhHhhh----hCCCC-CcchHHHHHHHHH----HhhhcccCCcccChHHHHHHcCCCChHHHHHH
Q 024854 60 SKYLDMLRLFAHGTWSDYKNN----AGHLP-QLVPDQVLKLKQL----TVLTLAETNKVLPYDELMEELDVTNVRELEDF 130 (261)
Q Consensus 60 ~~~~~LL~iFa~Gt~~dy~~~----~~~l~-~L~~~~~~KLr~L----TllsLa~~~k~Isy~~I~~~L~I~~~~evE~l 130 (261)
.+|+.|.++|..|++..|.+. ...+. .=+-..+.++++. -|..+......||+.+|+..|++++..++|.+
T Consensus 343 ~pY~~Lv~Avr~GdL~~F~~~L~~h~~~F~~Dgty~LI~rLr~~vir~~irkis~~YsrIsL~dIa~kL~L~s~eeaE~i 422 (523)
T 4b4t_S 343 LPYYHLTKAVKLGDLKKFTSTITKYKQLLLKDDTYQLCVRLRSNVIKTGIRIISLTYKKISLRDICLKLNLDSEQTVEYM 422 (523)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHHTTCTHHHHHHHHHHHHHHHHHSCCCSSEECHHHHHHHHHHHHSSCHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhcceeccCChhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHhCCCCHHHHHHH
Confidence 569999999999999999862 11111 1111234455443 34455567889999999999999878899999
Q ss_pred HHHHhHhcCceEEEecCCCCEEEE
Q 024854 131 LINECMYTGIVRGKLDQLRRCFEV 154 (261)
Q Consensus 131 vI~eAI~~gLI~GkIDQ~~~~v~V 154 (261)
|- ++|+.|.|+|+||+.++.|..
T Consensus 423 VA-kmI~dG~I~A~Idh~~g~v~s 445 (523)
T 4b4t_S 423 VS-RAIRDGVIEAKINHEDGFIET 445 (523)
T ss_dssp HH-HHHHHTSSCCEECTTTCCEEC
T ss_pred HH-HHHHcCCceEEEecCCCEEEe
Confidence 99 999999999999999997753
No 10
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=97.50 E-value=3.1e-05 Score=74.54 Aligned_cols=95 Identities=17% Similarity=0.168 Sum_probs=72.4
Q ss_pred HHHHHHHHhcCChhhHhhh----hCCCC-Ccc-hHHHHHHHHHHhhhcc----------cCCcccChHHHHHHcCC----
Q 024854 62 YLDMLRLFAHGTWSDYKNN----AGHLP-QLV-PDQVLKLKQLTVLTLA----------ETNKVLPYDELMEELDV---- 121 (261)
Q Consensus 62 ~~~LL~iFa~Gt~~dy~~~----~~~l~-~L~-~~~~~KLr~LTllsLa----------~~~k~Isy~~I~~~L~I---- 121 (261)
+..|...+..||+..|.+. ...+- .=. -..+.|+|++++-.|. .+...||++.|+.+|++
T Consensus 299 y~~L~~AVr~Gdl~~F~~~L~~~~~~f~~~gily~LlerLr~~v~RnLirkv~~~~~~~~~~srI~l~~i~~aL~~~~~~ 378 (455)
T 3t5v_B 299 WSVLYKHVRYGNIQGVSLWLRQNERHLCARQLLIVLLEKLPMVTYRNLIKTVIKSWTTEWGQNKLPYSLIERVLQLSIGP 378 (455)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCEEEHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHhHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeHHHHHHHHhhccCc
Confidence 7889999999999999862 22111 111 2346777777554332 23479999999999984
Q ss_pred ----------------CChHHHHHHHHHHhHhcCceEEEecCCCCEEEEEee
Q 024854 122 ----------------TNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFA 157 (261)
Q Consensus 122 ----------------~~~~evE~lvI~eAI~~gLI~GkIDQ~~~~v~V~~~ 157 (261)
.+.+|||.+|. .+|+.|+|+|+||+.++++.++..
T Consensus 379 ~~~~~~~~~~~~~~~~~~~devEcIlA-~LI~~G~IkGyIsh~~~~lVlSK~ 429 (455)
T 3t5v_B 379 TFEDPGAQEITIYNGIHSPKNVENVLV-TLINLGLLRANCFPQLQLCVVKKT 429 (455)
T ss_dssp CTTSTTCCCCCTTTSSCCSSCHHHHHH-HHHHHTSCCEEEETTTTEEEECCC
T ss_pred cccccccccccccccCCCHHHHHHHHH-HHHHcCCeEEEEecCCCEEEECCC
Confidence 24889999999 899999999999999999998764
No 11
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}
Probab=93.01 E-value=0.15 Score=44.23 Aligned_cols=100 Identities=14% Similarity=0.152 Sum_probs=69.4
Q ss_pred hcCCCcccchhhhc-CchhhhccCCC-chHHHHHHHHHhcCChhhHhhhhCCCCC-----cchHHHHHHHHHHhhhcccC
Q 024854 34 TSQPSLFAFSEILA-VPNIAEFEGTE-NSKYLDMLRLFAHGTWSDYKNNAGHLPQ-----LVPDQVLKLKQLTVLTLAET 106 (261)
Q Consensus 34 L~~p~vy~F~eLL~-lp~v~~L~~~~-~~~~~~LL~iFa~Gt~~dy~~~~~~l~~-----L~~~~~~KLr~LTllsLa~~ 106 (261)
|.-.++-.|.-.+. +|.-..+++++ -...+++-+.+..|+|..|-......|. +..-...++|.-.+-+++..
T Consensus 108 L~~~~~~ef~~~le~l~~~~~~~~~~~I~~al~l~~al~~GnY~kff~l~~~~p~~~~~~~~~~l~~~vR~~~l~~i~ka 187 (229)
T 4b0z_A 108 LSENRIAEFHTALESVPDKSLFERDPYVEWVISLEQNVMEGAFDKVASMIRSCNFPEFSYFMKIVMSMVRNEIATCAEKV 187 (229)
T ss_dssp HHTTCHHHHHHHHHHCSCTTHHHHCHHHHHHHHHHHHHHTTCHHHHHHHHHTCCCGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCchHHHHHHHhcChHHHhhcCHHHHHHHHHHHHHHcCCHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555543332 33222223333 2456889999999999998775444453 22334778888778888878
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHH
Q 024854 107 NKVLPYDELMEELDVTNVRELEDFLINE 134 (261)
Q Consensus 107 ~k~Isy~~I~~~L~I~~~~evE~lvI~e 134 (261)
...||.+++++.|+++|.++++.++- +
T Consensus 188 Y~~i~l~~~~~~L~f~s~~e~~~f~~-~ 214 (229)
T 4b0z_A 188 YSEIPLSNATSLLYLENTKETEKLAE-E 214 (229)
T ss_dssp CSEEEHHHHHHHTTCSSHHHHHHHHH-H
T ss_pred cCCCCHHHHHHHhCCCCHHHHHHHHH-H
Confidence 89999999999999999999999988 6
No 12
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=92.39 E-value=0.15 Score=36.92 Aligned_cols=54 Identities=11% Similarity=0.280 Sum_probs=46.5
Q ss_pred hhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCceEEEecCCCCEEEEE
Q 024854 100 VLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQ 155 (261)
Q Consensus 100 llsLa~~~k~Isy~~I~~~L~I~~~~evE~lvI~eAI~~gLI~GkIDQ~~~~v~V~ 155 (261)
++.....+++++.++||.++++. ..++-+-|- +....|.|.|-||...+-++|+
T Consensus 12 Fi~yIk~~Kvv~LedLA~~F~l~-t~~~i~RI~-~Le~~g~ltGViDDRGKfIyIs 65 (72)
T 1wi9_A 12 FINYIKKSKVVLLEDLAFQMGLR-TQDAINRIQ-DLLTEGTLTGVIDDRGKFIYIT 65 (72)
T ss_dssp HHHHHHHCSEECHHHHHHHHCSC-HHHHHHHHH-HHHHHSSSCEEECTTCCEEECC
T ss_pred HHHHHHHcCeeeHHHHHHHhCCC-hHHHHHHHH-HHHHCCCeEEEEeCCCCEEEec
Confidence 34555678999999999999998 777777777 8888999999999999999886
No 13
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=84.52 E-value=7.5 Score=28.80 Aligned_cols=69 Identities=14% Similarity=0.092 Sum_probs=48.8
Q ss_pred CcccChHHHHHHc-CCCChHHHHHHHHHHhHhcCceEEEecCCCCEEEEEeecCCCCCCCcHHHHHHHHHHHHHH
Q 024854 107 NKVLPYDELMEEL-DVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFAAGRDLRPGQLGSMIQTLSNWLTT 180 (261)
Q Consensus 107 ~k~Isy~~I~~~L-~I~~~~evE~lvI~eAI~~gLI~GkIDQ~~~~v~V~~~~~Rdl~~~q~~~L~~~L~~W~~~ 180 (261)
....++.+|++.+ +++ ...+=..|= .....|+|..+-+..++.....+.++. + .++-.....+..|...
T Consensus 25 ~~~~~~~eLa~~l~~is-~~tls~~L~-~Le~~GlI~r~~~~~d~r~~~y~LT~~--G-~~l~~~~~~l~~w~~~ 94 (107)
T 2hzt_A 25 HGKKRTSELKRLMPNIT-QKMLTQQLR-ELEADGVINRIVYNQVPPKVEYELSEY--G-RSLEGILDMLXAWGAN 94 (107)
T ss_dssp TCCBCHHHHHHHCTTSC-HHHHHHHHH-HHHHTTSEEEEEECSSSCEEEEEECTT--G-GGGHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHhcCCC-HHHHHHHHH-HHHHCCCEEEeecCCCCCeEEEEECcc--H-HHHHHHHHHHHHHHHH
Confidence 4568999999999 997 777777766 788899999999876655443343332 2 2344556777788754
No 14
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=83.17 E-value=3.4 Score=30.04 Aligned_cols=59 Identities=14% Similarity=0.179 Sum_probs=41.8
Q ss_pred HHHHHHhhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCceEEEecCCCCEEEEE
Q 024854 94 KLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQ 155 (261)
Q Consensus 94 KLr~LTllsLa~~~k~Isy~~I~~~L~I~~~~evE~lvI~eAI~~gLI~GkIDQ~~~~v~V~ 155 (261)
..+.|.++.-...++.+++.+||+.|+|+ ...|...|- +....|+|.-. +.....-.|.
T Consensus 12 ~~~IL~~L~~~~pg~~~t~~eLA~~Lgvs-r~tV~~~L~-~Le~~G~I~~~-g~~~~~W~i~ 70 (81)
T 1qbj_A 12 EQRILKFLEELGEGKATTAHDLSGKLGTP-KKEINRVLY-SLAKKGKLQKE-AGTPPLWKIA 70 (81)
T ss_dssp HHHHHHHHHHHCTTCCBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEE-SSSSCEEEEC
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEec-CCCCCeeEEe
Confidence 33445555533346689999999999998 899999988 88889998643 3444444443
No 15
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=82.02 E-value=6.2 Score=29.68 Aligned_cols=80 Identities=11% Similarity=0.239 Sum_probs=51.9
Q ss_pred HHHHHHHhhhcccCCcccChHHHHHHc-CCCChHHHHHHHHHHhHhcCceEEEecCCCCEEEEEe-ecCCCCCCCcHHHH
Q 024854 93 LKLKQLTVLTLAETNKVLPYDELMEEL-DVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQF-AAGRDLRPGQLGSM 170 (261)
Q Consensus 93 ~KLr~LTllsLa~~~k~Isy~~I~~~L-~I~~~~evE~lvI~eAI~~gLI~GkIDQ~~~~v~V~~-~~~Rdl~~~q~~~L 170 (261)
.|-+.+-|..|......++|.+|++.+ +|+ ...|=.-+= .....|+|.-+.+ +.+.+.- -.|+ ++...
T Consensus 26 ~~wrl~IL~~L~~g~~~~~~~eL~~~l~gis-~~~ls~~L~-~Le~~GlV~r~~~---r~~~y~LT~~G~-----~l~~~ 95 (111)
T 3df8_A 26 KKYTMLIISVLGNGSTRQNFNDIRSSIPGIS-STILSRRIK-DLIDSGLVERRSG---QITTYALTEKGM-----NVRNS 95 (111)
T ss_dssp STTHHHHHHHHTSSSSCBCHHHHHHTSTTCC-HHHHHHHHH-HHHHTTSEEEEES---SSEEEEECHHHH-----HHHHH
T ss_pred CccHHHHHHHHhcCCCCCCHHHHHHHccCCC-HHHHHHHHH-HHHHCCCEEEeec---CcEEEEECccHH-----HHHHH
Confidence 344444455555444446699999999 897 777776666 7788999999888 2333221 2232 24456
Q ss_pred HHHHHHHHHHHH
Q 024854 171 IQTLSNWLTTSD 182 (261)
Q Consensus 171 ~~~L~~W~~~~~ 182 (261)
...+..|....+
T Consensus 96 l~~l~~w~~~~~ 107 (111)
T 3df8_A 96 LMPLLQYISVLD 107 (111)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 777888877543
No 16
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=81.64 E-value=2.8 Score=32.19 Aligned_cols=82 Identities=10% Similarity=0.098 Sum_probs=56.2
Q ss_pred hcccCCcc-cChHHHHHHcCCCChHHHHHHHHHHhHhcCceEEEecCC--CCEEEEEeecCCCCCCCcHHHHHHHHHHHH
Q 024854 102 TLAETNKV-LPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQL--RRCFEVQFAAGRDLRPGQLGSMIQTLSNWL 178 (261)
Q Consensus 102 sLa~~~k~-Isy~~I~~~L~I~~~~evE~lvI~eAI~~gLI~GkIDQ~--~~~v~V~~~~~Rdl~~~q~~~L~~~L~~W~ 178 (261)
.|...... ++-.+|++.++++ ...|-..|= .....|+|...-+.. .+..++..+.+ ..+-.+.+...+..|.
T Consensus 34 ~L~~~~~~~~t~~eLa~~l~~s-~sTV~r~L~-~L~~~GlV~r~~~~~d~~~~~~~y~~~~---~~~~~~~i~~~~~~~~ 108 (123)
T 3r0a_A 34 SFLNEPDRWIDTDALSKSLKLD-VSTVQRSVK-KLHEKEILQRSQQNLDGGGYVYIYKIYS---KNQIRNIIQKIVQSWA 108 (123)
T ss_dssp HHHHSTTCCEEHHHHHHHHTSC-HHHHHHHHH-HHHHTTSEEEEEEECTTSCEEEEEEECC---HHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEeeCCccCCCcceEEEecCC---HHHHHHHHHHHHHHHH
Confidence 34445555 9999999999997 888887766 788899998765443 23333333332 1122456788899999
Q ss_pred HHHHHHHHHH
Q 024854 179 TTSDNLLISI 188 (261)
Q Consensus 179 ~~~~~~l~~i 188 (261)
+.+...++.+
T Consensus 109 ~~~~~~l~~~ 118 (123)
T 3r0a_A 109 DRLGQELKEW 118 (123)
T ss_dssp HHHHHTTTTT
T ss_pred HHHHHHHHHH
Confidence 9888766544
No 17
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=81.48 E-value=1 Score=34.87 Aligned_cols=71 Identities=15% Similarity=0.320 Sum_probs=43.7
Q ss_pred CCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCceEEE---ecCCCCEEEEEeecCCCCCCCcHHHHHHHHHHHH
Q 024854 106 TNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK---LDQLRRCFEVQFAAGRDLRPGQLGSMIQTLSNWL 178 (261)
Q Consensus 106 ~~k~Isy~~I~~~L~I~~~~evE~lvI~eAI~~gLI~Gk---IDQ~~~~v~V~~~~~Rdl~~~q~~~L~~~L~~W~ 178 (261)
.+..+|+.+|++.++++ ...+=..+= .....|+|.+. +|...--..++....=.+.+.....+.+.|..|-
T Consensus 15 ~~~~~~~~ela~~lg~s-~~tv~~~l~-~L~~~G~i~~~~~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~l~~~~ 88 (141)
T 1i1g_A 15 KDARTPFTEIAKKLGIS-ETAVRKRVK-ALEEKGIIEGYTIKINPKKLGYSLVTITGVDTKPEKLFEVAEKLKEYD 88 (141)
T ss_dssp HCTTCCHHHHHHHHTSC-HHHHHHHHH-HHHHHTSSCCCCCCCCSGGGTCCEEEEEEEEECGGGHHHHHHHHHHST
T ss_pred HcCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEeccccccChHHhCccEEEEEEEEECchhHHHHHHHHhcCC
Confidence 34567999999999997 777777666 77778999765 3332211111110000123456777777777774
No 18
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=81.03 E-value=3.8 Score=29.28 Aligned_cols=48 Identities=17% Similarity=0.201 Sum_probs=38.0
Q ss_pred HHHHhhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCceEEEe
Q 024854 96 KQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKL 145 (261)
Q Consensus 96 r~LTllsLa~~~k~Isy~~I~~~L~I~~~~evE~lvI~eAI~~gLI~GkI 145 (261)
+.|.++.-...+..+++.+||+.|+++ ...|...|= +....|+|.+.-
T Consensus 18 ~IL~~L~~~~~~~~~t~~eLA~~Lgvs-~~tV~~~L~-~L~~~G~I~~~g 65 (77)
T 1qgp_A 18 RILKFLEELGEGKATTAHDLSGKLGTP-KKEINRVLY-SLAKKGKLQKEA 65 (77)
T ss_dssp HHHHHHHHHCSSSCEEHHHHHHHHCCC-HHHHHHHHH-HHHHHTSEEEEC
T ss_pred HHHHHHHHcCCCCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEecC
Confidence 345555444456689999999999998 889999877 888999998864
No 19
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=77.36 E-value=10 Score=26.84 Aligned_cols=39 Identities=18% Similarity=0.287 Sum_probs=31.7
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCceEEEecC
Q 024854 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQ 147 (261)
Q Consensus 107 ~k~Isy~~I~~~L~I~~~~evE~lvI~eAI~~gLI~GkIDQ 147 (261)
+..+++.+|++.++++ ...|-..|= .....|+|...-+.
T Consensus 28 ~~~~~~~ela~~l~is-~~tvs~~l~-~L~~~gli~~~~~~ 66 (100)
T 1ub9_A 28 RRKAPFSQIQKVLDLT-PGNLDSHIR-VLERNGLVKTYKVI 66 (100)
T ss_dssp HSEEEHHHHHHHTTCC-HHHHHHHHH-HHHHTTSEEEEEEC
T ss_pred cCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEEecC
Confidence 3579999999999997 777887766 77889999976643
No 20
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=75.79 E-value=15 Score=26.11 Aligned_cols=73 Identities=15% Similarity=0.188 Sum_probs=46.7
Q ss_pred cccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCceEEEecCCCC---EEEEEeecCCCCCCCcHHHHHHHHHHHHH
Q 024854 103 LAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRR---CFEVQFAAGRDLRPGQLGSMIQTLSNWLT 179 (261)
Q Consensus 103 La~~~k~Isy~~I~~~L~I~~~~evE~lvI~eAI~~gLI~GkIDQ~~~---~v~V~~~~~Rdl~~~q~~~L~~~L~~W~~ 179 (261)
+...+..++..+|++.++++ ...|-..|= .....|+|...-+...+ .... +.. .++-+..+...+..|.+
T Consensus 30 l~~~~~~~t~~ela~~l~is-~~tv~~~l~-~L~~~g~v~~~~~~~~~~gr~~~~-~~l----~~~~~~~~~~~~~~~~~ 102 (109)
T 2d1h_A 30 MVEIEKPITSEELADIFKLS-KTTVENSLK-KLIELGLVVRTKTEGKKIGRPKYY-YSI----SSNILEKIRNDLLNCAK 102 (109)
T ss_dssp HHHHCSCEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEEC-------CCEE-EEE----CTTHHHHHHHHHHHHHH
T ss_pred HHHcCCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeEeeccccCCCCCCCee-eec----CHHHHHHHHHHHHHHHH
Confidence 33335679999999999997 878887776 78889999977664432 1211 111 12445666777777766
Q ss_pred HHH
Q 024854 180 TSD 182 (261)
Q Consensus 180 ~~~ 182 (261)
.+.
T Consensus 103 ~~~ 105 (109)
T 2d1h_A 103 RME 105 (109)
T ss_dssp HHH
T ss_pred HHh
Confidence 543
No 21
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=75.49 E-value=26 Score=27.43 Aligned_cols=76 Identities=20% Similarity=0.253 Sum_probs=52.3
Q ss_pred HHHHhhhcccCCcccChHHHHHHc-CCCChHHHHHHHHHHhHhcCceEEEecCCCCE-EEEEe-ecCCCCCCCcHHHHHH
Q 024854 96 KQLTVLTLAETNKVLPYDELMEEL-DVTNVRELEDFLINECMYTGIVRGKLDQLRRC-FEVQF-AAGRDLRPGQLGSMIQ 172 (261)
Q Consensus 96 r~LTllsLa~~~k~Isy~~I~~~L-~I~~~~evE~lvI~eAI~~gLI~GkIDQ~~~~-v~V~~-~~~Rdl~~~q~~~L~~ 172 (261)
+.+.|..|. .+..+|.+|++.+ +|+ ...|=..|= +....|||.=+.+..... +.+.- -.||. +.....
T Consensus 28 ~l~IL~~L~--~g~~rf~eL~~~l~gIs-~~~Ls~~L~-~Le~~GLV~R~~~~~d~r~v~y~LT~~G~~-----l~~~l~ 98 (131)
T 4a5n_A 28 KGILFYHMI--DGKKRFNEFRRICPSIT-QRMLTLQLR-ELEADGIVHREVYHQVPPKVEYSLTEFGRT-----LEPIVL 98 (131)
T ss_dssp HHHHHHHHT--TSCBCHHHHHHHCTTSC-HHHHHHHHH-HHHHTTSEEEEEECSSSCEEEEEECTTGGG-----GHHHHH
T ss_pred HHHHHHHHh--cCCcCHHHHHHHhcccC-HHHHHHHHH-HHHHCCCEEEEecCCCCCeEEEEECHhHHH-----HHHHHH
Confidence 334444554 5679999999999 997 777777776 788899999888775543 33322 23443 455677
Q ss_pred HHHHHHHH
Q 024854 173 TLSNWLTT 180 (261)
Q Consensus 173 ~L~~W~~~ 180 (261)
.|..|...
T Consensus 99 ~l~~W~~~ 106 (131)
T 4a5n_A 99 QMKEWGES 106 (131)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88888754
No 22
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=74.62 E-value=3.9 Score=32.13 Aligned_cols=47 Identities=19% Similarity=0.280 Sum_probs=36.5
Q ss_pred hhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCceEE---EecCC
Q 024854 100 VLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRG---KLDQL 148 (261)
Q Consensus 100 llsLa~~~k~Isy~~I~~~L~I~~~~evE~lvI~eAI~~gLI~G---kIDQ~ 148 (261)
|+.+...+..+|+.+|++.++++ ...+-..+= .....|+|.+ .+|..
T Consensus 13 il~~L~~~~~~s~~ela~~lg~s-~~tv~~~l~-~L~~~G~i~~~~~~~~~~ 62 (152)
T 2cg4_A 13 ILEALMGNARTAYAELAKQFGVS-PETIHVRVE-KMKQAGIITGARIDVSPK 62 (152)
T ss_dssp HHHHHHHCTTSCHHHHHHHHTSC-HHHHHHHHH-HHHHHTSEEEEEEEECTT
T ss_pred HHHHHHHcCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHcCCcceEEEecCHH
Confidence 33333445679999999999997 888888777 8888999986 56764
No 23
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=73.89 E-value=15 Score=27.19 Aligned_cols=63 Identities=5% Similarity=0.032 Sum_probs=45.9
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCceEEEecCCCCEEEEEeecCCCCCCCcHHHHHHHHHHHHHH
Q 024854 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFAAGRDLRPGQLGSMIQTLSNWLTT 180 (261)
Q Consensus 108 k~Isy~~I~~~L~I~~~~evE~lvI~eAI~~gLI~GkIDQ~~~~v~V~~~~~Rdl~~~q~~~L~~~L~~W~~~ 180 (261)
+.+++.+|++.++++ ...|-..+= .....|+|..+-+.. .+. |. +.++.+..+.+.|..|...
T Consensus 37 ~~~s~~eLa~~lgis-~stvs~~L~-~L~~~GlV~~~~~gr--~~~--y~----l~~~~~~~l~~~l~~~~~~ 99 (108)
T 2kko_A 37 GERAVEAIATATGMN-LTTASANLQ-ALKSGGLVEARREGT--RQY--YR----IAGEDVARLFALVQVVADE 99 (108)
T ss_dssp CCEEHHHHHHHHTCC-HHHHHHHHH-HHHHHTSEEEEEETT--EEE--EE----ESCHHHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeEEEEeCC--EEE--EE----EChHHHHHHHHHHHHHhhH
Confidence 568999999999997 888887766 778899998775433 222 21 2335678888888888743
No 24
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=73.80 E-value=3.7 Score=32.16 Aligned_cols=47 Identities=23% Similarity=0.272 Sum_probs=35.8
Q ss_pred hhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCceEEE---ecCC
Q 024854 100 VLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK---LDQL 148 (261)
Q Consensus 100 llsLa~~~k~Isy~~I~~~L~I~~~~evE~lvI~eAI~~gLI~Gk---IDQ~ 148 (261)
|+.+...+..+|+.+|++.++++ ...+-..+= .....|+|.+. +|..
T Consensus 14 il~~L~~~~~~s~~ela~~lg~s-~~tv~~~l~-~L~~~G~i~~~~~~~~~~ 63 (151)
T 2dbb_A 14 LVKILSENSRLTYRELADILNTT-RQRIARRID-KLKKLGIIRKFTIIPDID 63 (151)
T ss_dssp HHHHHHHCTTCCHHHHHHHTTSC-HHHHHHHHH-HHHHHTSEEEEEEEECTG
T ss_pred HHHHHHHcCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEEEecCChH
Confidence 33333445679999999999997 888888777 88889999854 5654
No 25
>4b4t_T 26S proteasome regulatory subunit RPN12; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=72.93 E-value=7.6 Score=34.37 Aligned_cols=95 Identities=15% Similarity=0.160 Sum_probs=68.2
Q ss_pred Ccccch-hhhcCchh-hhccCCC-chHHHHHHHHHhcCChhhHhhh--hCCCCC-----cchHHHHHHHHHHhhhcccCC
Q 024854 38 SLFAFS-EILAVPNI-AEFEGTE-NSKYLDMLRLFAHGTWSDYKNN--AGHLPQ-----LVPDQVLKLKQLTVLTLAETN 107 (261)
Q Consensus 38 ~vy~F~-eLL~lp~v-~~L~~~~-~~~~~~LL~iFa~Gt~~dy~~~--~~~l~~-----L~~~~~~KLr~LTllsLa~~~ 107 (261)
++-.|. +|-.+|.. .++.+++ -...+++-+.+..|+|..|-.. .+..|. +.+-...++|.-.+-+++...
T Consensus 118 ~~~efh~~Le~L~~~~~~~~~d~~Ik~al~le~al~eGnY~kff~l~~~~~~p~~~~~~f~d~l~~~iR~~a~~~i~kaY 197 (274)
T 4b4t_T 118 NTTKFHSELQYLDKHIKNLEDDSLLSYPIKLDRWLMEGSYQKAWDLLQSGSQNISEFDSFTDILKSAIRDEIAKNTELSY 197 (274)
T ss_dssp CSTHHHHHHHSSSCSSSTTTCCHHHHHHHHHHHHHHHTCSHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHhcchhhHhHhcChHHHHHHHHHHHHHcCCHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444 34445543 3444444 2446788899999999998652 233343 334457888988888888888
Q ss_pred cccChHHHHHHcCCCChHHHHHHHH
Q 024854 108 KVLPYDELMEELDVTNVRELEDFLI 132 (261)
Q Consensus 108 k~Isy~~I~~~L~I~~~~evE~lvI 132 (261)
+.||.+.+++.|+.+|..++.+|+-
T Consensus 198 ~~i~l~~~~~~L~F~s~~e~~~F~~ 222 (274)
T 4b4t_T 198 DFLPLSNIKALLFFNNEKETEKFAL 222 (274)
T ss_dssp SSCCHHHHHHHHTCCSHHHHHHHHH
T ss_pred hhcCHHHHHHHhCCCCHHHHHHHHH
Confidence 9999999999999999999999987
No 26
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=72.78 E-value=3.5 Score=32.26 Aligned_cols=47 Identities=15% Similarity=0.230 Sum_probs=35.9
Q ss_pred hhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCceEEE---ecCC
Q 024854 100 VLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK---LDQL 148 (261)
Q Consensus 100 llsLa~~~k~Isy~~I~~~L~I~~~~evE~lvI~eAI~~gLI~Gk---IDQ~ 148 (261)
|+.+...+..+|+.+|++.++++ ...+-..+= .....|+|.+. +|..
T Consensus 10 il~~L~~~~~~s~~ela~~lg~s-~~tv~~~l~-~L~~~G~i~~~~~~~d~~ 59 (144)
T 2cfx_A 10 IIEELKKDSRLSMRELGRKIKLS-PPSVTERVR-QLESFGIIKQYTLEVDQK 59 (144)
T ss_dssp HHHHHHHCSCCCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEEEEECTG
T ss_pred HHHHHHHcCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeEEEecccChh
Confidence 33333445669999999999997 888888777 88889999864 5654
No 27
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=72.59 E-value=3.6 Score=32.78 Aligned_cols=42 Identities=26% Similarity=0.175 Sum_probs=33.7
Q ss_pred cCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCceEE---EecCC
Q 024854 105 ETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRG---KLDQL 148 (261)
Q Consensus 105 ~~~k~Isy~~I~~~L~I~~~~evE~lvI~eAI~~gLI~G---kIDQ~ 148 (261)
..+..+|+.+|++.++++ ...+-..+- .....|+|.+ .+|..
T Consensus 20 ~~~~~~s~~ela~~lg~s-~~tv~~~l~-~L~~~G~i~~~~~~~d~~ 64 (162)
T 2p5v_A 20 QENGRLTNVELSERVALS-PSPCLRRLK-QLEDAGIVRQYAALLSPE 64 (162)
T ss_dssp HHCTTCCHHHHHHHHTSC-HHHHHHHHH-HHHHTTSEEEEEEEECTG
T ss_pred HHcCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEeeecccCChH
Confidence 344568999999999997 888888877 8889999986 45543
No 28
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=72.17 E-value=8.6 Score=29.91 Aligned_cols=48 Identities=17% Similarity=0.323 Sum_probs=37.0
Q ss_pred HhhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCceEE---EecCC
Q 024854 99 TVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRG---KLDQL 148 (261)
Q Consensus 99 TllsLa~~~k~Isy~~I~~~L~I~~~~evE~lvI~eAI~~gLI~G---kIDQ~ 148 (261)
.|+.+...+..+|+.+|++.++++ ...+-..+= .....|+|.+ .+|..
T Consensus 7 ~il~~L~~~~~~~~~ela~~lg~s-~~tv~~~l~-~L~~~G~i~~~~~~~d~~ 57 (150)
T 2pn6_A 7 RILKILQYNAKYSLDEIAREIRIP-KATLSYRIK-KLEKDGVIKGYYAYINPA 57 (150)
T ss_dssp HHHHHHTTCTTSCHHHHHHHHTSC-HHHHHHHHH-HHHHTTSSCCCCCCCCGG
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCcEEEEEeecCHH
Confidence 344444556679999999999997 888887777 8888999987 56653
No 29
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=72.00 E-value=6.2 Score=31.23 Aligned_cols=57 Identities=16% Similarity=0.240 Sum_probs=41.2
Q ss_pred HHHHHhhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCceEEEecCCCCEEEE
Q 024854 95 LKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEV 154 (261)
Q Consensus 95 Lr~LTllsLa~~~k~Isy~~I~~~L~I~~~~evE~lvI~eAI~~gLI~GkIDQ~~~~v~V 154 (261)
++.|..+.....++.++-.+|++.++++ ..-|+.++- ..-.+|+|... -..++-+..
T Consensus 14 l~~L~~La~~~~~~~~s~~~IA~~~~i~-~~~l~kil~-~L~~aGlv~s~-rG~~GGy~L 70 (143)
T 3t8r_A 14 LTLMISLAKKEGQGCISLKSIAEENNLS-DLYLEQLVG-PLRNAGLIRSV-RGAKGGYQL 70 (143)
T ss_dssp HHHHHHHHTTTTSCCEEHHHHHHHTTCC-HHHHHHHHH-HHHHTTSEEEC-SSSSSEEEE
T ss_pred HHHHHHHHhCCCCCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCEEEec-CCCCCCeee
Confidence 3444444433345679999999999998 999999988 88999999864 334454443
No 30
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=71.26 E-value=3.8 Score=33.34 Aligned_cols=42 Identities=17% Similarity=0.188 Sum_probs=33.6
Q ss_pred cCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCceEE---EecCC
Q 024854 105 ETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRG---KLDQL 148 (261)
Q Consensus 105 ~~~k~Isy~~I~~~L~I~~~~evE~lvI~eAI~~gLI~G---kIDQ~ 148 (261)
..+..+|+.+|++.++++ ...|-..|- .....|+|.+ .+|..
T Consensus 27 ~~~~~~s~~eLA~~lglS-~~tv~~~l~-~L~~~G~I~~~~~~~d~~ 71 (171)
T 2ia0_A 27 KKDARLTISELSEQLKKP-ESTIHFRIK-KLQERGVIERYTIILGEQ 71 (171)
T ss_dssp HHCTTCCHHHHHHHHTSC-HHHHHHHHH-HHHHTTSEEEEEEEECTT
T ss_pred HHcCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEeecccCCHH
Confidence 344569999999999997 888888777 8888999975 45553
No 31
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=70.99 E-value=8.1 Score=31.37 Aligned_cols=64 Identities=11% Similarity=0.102 Sum_probs=45.7
Q ss_pred cchHHHHHHHHHHhhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCceEEEecCCCCEEE
Q 024854 87 LVPDQVLKLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFE 153 (261)
Q Consensus 87 L~~~~~~KLr~LTllsLa~~~k~Isy~~I~~~L~I~~~~evE~lvI~eAI~~gLI~GkIDQ~~~~v~ 153 (261)
++....-=+|.|..++....++.+|-.+|++.+++| ..-|+.++- ..-.+|+|...= ..++-+.
T Consensus 22 lS~~~~yAlr~L~~LA~~~~~~~~s~~eIA~~~~i~-~~~l~kil~-~L~~aGlv~s~r-G~~GGy~ 85 (159)
T 3lwf_A 22 ITTKGRYGLTITLELAKRIGDGPISLRSIAQDKNLS-EHYLEQLIG-PLRNAGIVKSIR-GAHGGYV 85 (159)
T ss_dssp CCHHHHHHHHHHHHHHHTTTSCCBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEC-STTCEEE
T ss_pred CchHHHHHHHHHHHHHhcCCCCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCeEEEec-CCCCceE
Confidence 454434445555555544456679999999999998 999999988 889999998763 3344433
No 32
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=70.91 E-value=20 Score=27.79 Aligned_cols=79 Identities=13% Similarity=0.157 Sum_probs=50.3
Q ss_pred HHHHHHhhhcccCCcccChHHHHHHc-CCCChHHHHHHHHHHhHhcCceEEEecCCCCEEEEEeecCCCCCCCcHHHHHH
Q 024854 94 KLKQLTVLTLAETNKVLPYDELMEEL-DVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFAAGRDLRPGQLGSMIQ 172 (261)
Q Consensus 94 KLr~LTllsLa~~~k~Isy~~I~~~L-~I~~~~evE~lvI~eAI~~gLI~GkIDQ~~~~v~V~~~~~Rdl~~~q~~~L~~ 172 (261)
+.+.+.|..|. ...++|.+|++.+ +|+ ...|=..|= .....|+|.-+-+...+.....+.++. + .++-....
T Consensus 35 ~w~l~IL~~L~--~g~~~~~eLa~~l~gis-~~tls~~L~-~Le~~GlV~r~~~~~d~r~~~y~LT~~--G-~~l~~~l~ 107 (131)
T 1yyv_A 35 RWGVLILVALR--DGTHRFSDLRRXMGGVS-EXMLAQSLQ-ALEQDGFLNRVSYPVVPPHVEYSLTPL--G-EQVSDXVA 107 (131)
T ss_dssp HHHHHHHHHGG--GCCEEHHHHHHHSTTCC-HHHHHHHHH-HHHHHTCEEEEEECSSSCEEEEEECHH--H-HHHHHHHH
T ss_pred CcHHHHHHHHH--cCCCCHHHHHHHhccCC-HHHHHHHHH-HHHHCCcEEEEecCCCCCeEEEEECcc--H-HHHHHHHH
Confidence 34433444454 4578999999999 697 777777766 788899999988876554433333321 1 12334455
Q ss_pred HHHHHHH
Q 024854 173 TLSNWLT 179 (261)
Q Consensus 173 ~L~~W~~ 179 (261)
.+..|..
T Consensus 108 ~l~~w~~ 114 (131)
T 1yyv_A 108 ALADWIE 114 (131)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666754
No 33
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=70.49 E-value=18 Score=26.53 Aligned_cols=66 Identities=15% Similarity=0.142 Sum_probs=46.1
Q ss_pred CcccChHHHHHHcC-CCChHHHHHHHHHHhHhcCceEEEecCCCCEEEEEee--cCCCCCCCcHHHHHHHHHHHHH
Q 024854 107 NKVLPYDELMEELD-VTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFA--AGRDLRPGQLGSMIQTLSNWLT 179 (261)
Q Consensus 107 ~k~Isy~~I~~~L~-I~~~~evE~lvI~eAI~~gLI~GkIDQ~~~~v~V~~~--~~Rdl~~~q~~~L~~~L~~W~~ 179 (261)
...++|.+|++.++ ++ ...|=..|= .....|+|..+-+..++....-+. .|+. +-.....+.+|..
T Consensus 36 ~~~~~~~eL~~~l~gis-~~~ls~~L~-~Le~~GlV~r~~~~~d~r~~~y~LT~~G~~-----l~~~l~~l~~w~~ 104 (107)
T 2fsw_A 36 RRIIRYGELKRAIPGIS-EKMLIDELK-FLCGKGLIKKKQYPEVPPRVEYSLTPLGEK-----VLPIIDEIAKFGM 104 (107)
T ss_dssp TSCEEHHHHHHHSTTCC-HHHHHHHHH-HHHHTTSEEEEEECSSSCEEEEEECHHHHT-----THHHHHHHHHHHH
T ss_pred hCCcCHHHHHHHcccCC-HHHHHHHHH-HHHHCCCEEEeecCCCCCeeEEEECccHHH-----HHHHHHHHHHHHH
Confidence 45789999999995 97 777777766 788899999988876554333333 2333 2344567777764
No 34
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=70.12 E-value=2.7 Score=34.31 Aligned_cols=67 Identities=9% Similarity=0.196 Sum_probs=43.7
Q ss_pred cCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCceEE---EecCCC--CE--EEEEeecCCCCCCCcHHHHHHHHHHH
Q 024854 105 ETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRG---KLDQLR--RC--FEVQFAAGRDLRPGQLGSMIQTLSNW 177 (261)
Q Consensus 105 ~~~k~Isy~~I~~~L~I~~~~evE~lvI~eAI~~gLI~G---kIDQ~~--~~--v~V~~~~~Rdl~~~q~~~L~~~L~~W 177 (261)
..+..+||.+|++.++++ ...+-..+- .....|+|++ .+|... .. ..|.+..+ ++..+.+.+.|..|
T Consensus 37 ~~~~~~s~~eLA~~lglS-~~tv~~rl~-~L~~~G~I~~~~a~vd~~~~G~~~~a~v~v~~~----~~~~~~v~~~l~~~ 110 (171)
T 2e1c_A 37 QNDGKAPLREISKITGLA-ESTIHERIR-KLRESGVIKKFTAIIDPEALGYSMLAFILVKVK----AGKYSEVASNLAKY 110 (171)
T ss_dssp HHCTTCCHHHHHHHHTSC-HHHHHHHHH-HHHHTTSSCCCCCCCCGGGGTCCEEEEEEEEEC----TTCHHHHHHHHHTS
T ss_pred HHcCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeEeeeEEECHHHcCCCEEEEEEEEEC----cchHHHHHHHHhcC
Confidence 445679999999999997 888887777 7888999976 355432 22 23322222 45555555555543
No 35
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=69.75 E-value=29 Score=25.15 Aligned_cols=37 Identities=16% Similarity=0.105 Sum_probs=31.1
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCceEEEec
Q 024854 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLD 146 (261)
Q Consensus 108 k~Isy~~I~~~L~I~~~~evE~lvI~eAI~~gLI~GkID 146 (261)
+.++..+|++.++++ ...|-..|= .....|+|.-.-+
T Consensus 33 ~~~~~~ela~~l~is-~~tv~~~l~-~L~~~gli~~~~~ 69 (114)
T 2oqg_A 33 ADQSASSLATRLPVS-RQAIAKHLN-ALQACGLVESVKV 69 (114)
T ss_dssp SCBCHHHHHHHSSSC-HHHHHHHHH-HHHHTTSEEEEEE
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeeEEec
Confidence 458999999999997 778887776 7888999987655
No 36
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=68.89 E-value=23 Score=26.54 Aligned_cols=43 Identities=16% Similarity=0.017 Sum_probs=35.3
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCceEEEecCCCCE
Q 024854 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (261)
Q Consensus 107 ~k~Isy~~I~~~L~I~~~~evE~lvI~eAI~~gLI~GkIDQ~~~~ 151 (261)
+..++..+|++.++++ ...|=..|= .....|+|.-.-|..++.
T Consensus 48 ~~~~~~~ela~~l~~s-~~tvs~~l~-~Le~~glv~r~~~~~d~r 90 (146)
T 2gxg_A 48 DGPKTMAYLANRYFVT-QSAITASVD-KLEEMGLVVRVRDREDRR 90 (146)
T ss_dssp TSCBCHHHHHHHTTCC-HHHHHHHHH-HHHHTTSEEEEECSSCTT
T ss_pred cCCcCHHHHHHHhCCC-chhHHHHHH-HHHHCCCEEeecCCCCCc
Confidence 5679999999999997 778877766 888899999887765443
No 37
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=68.77 E-value=29 Score=25.61 Aligned_cols=46 Identities=17% Similarity=0.126 Sum_probs=37.3
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCceEEEecCCCCEEEE
Q 024854 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEV 154 (261)
Q Consensus 107 ~k~Isy~~I~~~L~I~~~~evE~lvI~eAI~~gLI~GkIDQ~~~~v~V 154 (261)
+..++..+|++.++++ ...|-..|= .....|+|.-.-|..++....
T Consensus 41 ~~~~~~~ela~~l~~s-~~tvs~~l~-~L~~~glv~~~~~~~d~R~~~ 86 (138)
T 3bpv_A 41 EPGIKQDELATFFHVD-KGTIARTLR-RLEESGFIEREQDPENRRRYI 86 (138)
T ss_dssp STTCBHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEEETTEEEEEE
T ss_pred cCCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEeecCCCCceeEE
Confidence 4678999999999997 888887766 888899999988876655443
No 38
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=68.68 E-value=16 Score=25.83 Aligned_cols=63 Identities=16% Similarity=0.212 Sum_probs=42.4
Q ss_pred cCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCceEEEecCCCCEEEEEeecCCCCCCCcHHHHHHHHHHH
Q 024854 105 ETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFAAGRDLRPGQLGSMIQTLSNW 177 (261)
Q Consensus 105 ~~~k~Isy~~I~~~L~I~~~~evE~lvI~eAI~~gLI~GkIDQ~~~~v~V~~~~~Rdl~~~q~~~L~~~L~~W 177 (261)
..+..++..+|++.++++ ...|-..+= .....|+|...=+.....+.+ .++.+..+.+.|..+
T Consensus 34 ~~~~~~s~~ela~~l~is-~~tvs~~l~-~L~~~glv~~~~~~r~~~y~l--------~~~~~~~l~~~l~~~ 96 (99)
T 3cuo_A 34 SGSPGTSAGELTRITGLS-ASATSQHLA-RMRDEGLIDSQRDAQRILYSI--------KNEAVNAIIATLKNV 96 (99)
T ss_dssp TTCCSEEHHHHHHHHCCC-HHHHHHHHH-HHHHTTSEEEEECSSCEEEEE--------CCHHHHHHHHHHHHH
T ss_pred HhCCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEEecCCEEEEEE--------ChHHHHHHHHHHHHh
Confidence 446679999999999997 778877766 788899998775533222222 234455555555544
No 39
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=68.48 E-value=27 Score=26.12 Aligned_cols=42 Identities=10% Similarity=0.051 Sum_probs=34.7
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCceEEEecCCCCE
Q 024854 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (261)
Q Consensus 108 k~Isy~~I~~~L~I~~~~evE~lvI~eAI~~gLI~GkIDQ~~~~ 151 (261)
..++..+|++.++++ ...|=..|= .....|+|.-.-|..++.
T Consensus 42 ~~~t~~~la~~l~~s-~~~vs~~l~-~Le~~gli~r~~~~~d~R 83 (144)
T 1lj9_A 42 PGIIQEKIAELIKVD-RTTAARAIK-RLEEQGFIYRQEDASNKK 83 (144)
T ss_dssp TTEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEECSSCTT
T ss_pred cCcCHHHHHHHHCCC-HhHHHHHHH-HHHHCCCEEeecCCCCCc
Confidence 478999999999997 778887766 888899999988775444
No 40
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=68.16 E-value=34 Score=25.30 Aligned_cols=68 Identities=24% Similarity=0.130 Sum_probs=45.8
Q ss_pred cccChHHHHHHc-CCCChHHHHHHHHHHhHhcCceEEEecCCCCEEEEEeecCCCCCCCcHHHHHHHHHHHHHH
Q 024854 108 KVLPYDELMEEL-DVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFAAGRDLRPGQLGSMIQTLSNWLTT 180 (261)
Q Consensus 108 k~Isy~~I~~~L-~I~~~~evE~lvI~eAI~~gLI~GkIDQ~~~~v~V~~~~~Rdl~~~q~~~L~~~L~~W~~~ 180 (261)
..+++.+|++.+ +++ ...|=..|= .....|+|...-+..++....-..++. + .++-.....+..|...
T Consensus 34 ~~~~~~eLa~~l~~is-~~tvs~~L~-~Le~~GlI~r~~~~~d~r~~~~~LT~~--G-~~~~~~~~~l~~w~~~ 102 (112)
T 1z7u_A 34 GTKRNGELMRALDGIT-QRVLTDRLR-EMEKDGLVHRESFNELPPRVEYTLTPE--G-YALYDALSSLCHWGET 102 (112)
T ss_dssp SCBCHHHHHHHSTTCC-HHHHHHHHH-HHHHHTSEEEEEECCSSCEEEEEECHH--H-HHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhccCC-HHHHHHHHH-HHHHCCCEEEeecCCCCCeEEEEECHh--H-HHHHHHHHHHHHHHHH
Confidence 468999999999 997 778887776 888899999998876554433333221 0 1223334556666643
No 41
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=68.00 E-value=3.1 Score=32.80 Aligned_cols=43 Identities=7% Similarity=0.225 Sum_probs=33.0
Q ss_pred hhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCceEEE
Q 024854 100 VLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK 144 (261)
Q Consensus 100 llsLa~~~k~Isy~~I~~~L~I~~~~evE~lvI~eAI~~gLI~Gk 144 (261)
|+.+...+..+|+.+|++.++++ ...+-..+= .....|+|.+.
T Consensus 12 il~~L~~~~~~s~~ela~~lg~s-~~tv~~~l~-~L~~~G~i~~~ 54 (151)
T 2cyy_A 12 IIKILQNDGKAPLREISKITGLA-ESTIHERIR-KLRESGVIKKF 54 (151)
T ss_dssp HHHHHHHCTTCCHHHHHHHHCSC-HHHHHHHHH-HHHHHTSSCCC
T ss_pred HHHHHHHcCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeEEE
Confidence 33333445679999999999997 888887777 78889999763
No 42
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=67.18 E-value=16 Score=27.77 Aligned_cols=49 Identities=12% Similarity=0.156 Sum_probs=37.4
Q ss_pred HHHHHHhhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCceEEE
Q 024854 94 KLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK 144 (261)
Q Consensus 94 KLr~LTllsLa~~~k~Isy~~I~~~L~I~~~~evE~lvI~eAI~~gLI~Gk 144 (261)
=++.|..+.....++.++-.+|++.++++ ...|+.++- .....|+|...
T Consensus 11 al~iL~~la~~~~~~~~s~~ela~~~~i~-~~~v~~il~-~L~~~Glv~~~ 59 (129)
T 2y75_A 11 GLTIMIELAKKHGEGPTSLKSIAQTNNLS-EHYLEQLVS-PLRNAGLVKSI 59 (129)
T ss_dssp HHHHHHHHHHTTTSCCBCHHHHHHHTTSC-HHHHHHHHH-HHHHTTSEEEC
T ss_pred HHHHHHHHHhCCCCCcCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCceEec
Confidence 34444444433346789999999999998 999999888 88889998754
No 43
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=66.26 E-value=5.7 Score=31.79 Aligned_cols=48 Identities=15% Similarity=0.281 Sum_probs=37.4
Q ss_pred HhhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCceEE---EecCC
Q 024854 99 TVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRG---KLDQL 148 (261)
Q Consensus 99 TllsLa~~~k~Isy~~I~~~L~I~~~~evE~lvI~eAI~~gLI~G---kIDQ~ 148 (261)
.|+.+.+.+..+||.+|++.++++ ...+-.-+= +....|+|+| .+|..
T Consensus 7 ~il~~L~~~~~~s~~~la~~lg~s-~~tv~~rl~-~L~~~g~i~~~~a~~~~~ 57 (162)
T 3i4p_A 7 KILRILQEDSTLAVADLAKKVGLS-TTPCWRRIQ-KMEEDGVIRRRVALLDPV 57 (162)
T ss_dssp HHHHHHTTCSCSCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSSCCCCCCCCTT
T ss_pred HHHHHHHHCCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeeeceeeeCHH
Confidence 345555667788999999999997 888887777 7888999885 56654
No 44
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=66.19 E-value=27 Score=26.30 Aligned_cols=41 Identities=7% Similarity=0.034 Sum_probs=33.5
Q ss_pred ccChHHHHHHcCCCChHHHHHHHHHHhHhcCceEEEecCCCCE
Q 024854 109 VLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (261)
Q Consensus 109 ~Isy~~I~~~L~I~~~~evE~lvI~eAI~~gLI~GkIDQ~~~~ 151 (261)
.++..+|++.++++ ...+=..|= .....|+|.-.-|..++.
T Consensus 45 ~~t~~eLa~~l~~~-~~tvs~~l~-~Le~~Glv~r~~~~~D~R 85 (145)
T 3g3z_A 45 SRTQKHIGEKWSLP-KQTVSGVCK-TLAGQGLIEWQEGEQDRR 85 (145)
T ss_dssp SBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEECCCSSCGG
T ss_pred CCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEeeccCCCCCc
Confidence 49999999999997 778887766 888899999877765443
No 45
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=64.08 E-value=19 Score=26.91 Aligned_cols=38 Identities=13% Similarity=0.135 Sum_probs=31.2
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCceEEEecC
Q 024854 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQ 147 (261)
Q Consensus 108 k~Isy~~I~~~L~I~~~~evE~lvI~eAI~~gLI~GkIDQ 147 (261)
+..+..+|++.++++ ...|=.-+= .....|+|..+-+.
T Consensus 30 ~~~~~~eLa~~l~is-~~tvs~hL~-~L~~~GlV~~~~~g 67 (118)
T 3f6o_A 30 GPATVSELAKPFDMA-LPSFMKHIH-FLEDSGWIRTHKQG 67 (118)
T ss_dssp CCEEHHHHHTTCCSC-HHHHHHHHH-HHHHTTSEEEEEET
T ss_pred CCCCHHHHHHHhCcC-HHHHHHHHH-HHHHCCCeEEEecC
Confidence 567999999999997 777776666 67789999987774
No 46
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=63.69 E-value=12 Score=27.49 Aligned_cols=46 Identities=13% Similarity=0.193 Sum_probs=35.4
Q ss_pred HHHHHHHHhhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCceEE
Q 024854 92 VLKLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRG 143 (261)
Q Consensus 92 ~~KLr~LTllsLa~~~k~Isy~~I~~~L~I~~~~evE~lvI~eAI~~gLI~G 143 (261)
-.+.+.|.++. .. . +|+.+|+++|+|+ ...|-..|- ..-..|+|.-
T Consensus 17 ~~~~~IL~lL~--~~-g-~sa~eLAk~LgiS-k~aVr~~L~-~Le~eG~I~~ 62 (82)
T 1oyi_A 17 EIVCEAIKTIG--IE-G-ATAAQLTRQLNME-KREVNKALY-DLQRSAMVYS 62 (82)
T ss_dssp HHHHHHHHHHS--SS-T-EEHHHHHHHSSSC-HHHHHHHHH-HHHHHTSSEE
T ss_pred HHHHHHHHHHH--Hc-C-CCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEe
Confidence 34555566665 33 3 9999999999998 888888877 7778898875
No 47
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=62.32 E-value=13 Score=27.98 Aligned_cols=46 Identities=15% Similarity=0.022 Sum_probs=37.2
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCceEEEecCCCCEEEE
Q 024854 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEV 154 (261)
Q Consensus 107 ~k~Isy~~I~~~L~I~~~~evE~lvI~eAI~~gLI~GkIDQ~~~~v~V 154 (261)
+..++..+|++.++++ ...|-..|= .....|+|.-.-|..++....
T Consensus 45 ~~~~~~~~la~~l~~s-~~tvs~~l~-~L~~~glv~r~~~~~d~r~~~ 90 (145)
T 2a61_A 45 EGPKRPGELSVLLGVA-KSTVTGLVK-RLEADGYLTRTPDPADRRAYF 90 (145)
T ss_dssp HCCBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEEETTEEEEEE
T ss_pred cCCCCHHHHHHHHCCC-chhHHHHHH-HHHHCCCeeecCCCCCCceEE
Confidence 3469999999999997 778887766 888899999988876665443
No 48
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=61.08 E-value=13 Score=28.43 Aligned_cols=44 Identities=9% Similarity=0.090 Sum_probs=30.0
Q ss_pred CCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCceEEE--ecCCCCE
Q 024854 106 TNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK--LDQLRRC 151 (261)
Q Consensus 106 ~~k~Isy~~I~~~L~I~~~~evE~lvI~eAI~~gLI~Gk--IDQ~~~~ 151 (261)
.+..++..+|++.++++ ...|=..|= .....|+|.-. -|..++.
T Consensus 48 ~~~~~t~~eLa~~l~~~-~~~vs~~l~-~Le~~Glv~r~~~~~~~D~R 93 (151)
T 3kp7_A 48 SIEALTVGQITEKQGVN-KAAVSRRVK-KLLNAELVKLEKPDSNTDQR 93 (151)
T ss_dssp HHSCBCHHHHHHHHCSC-SSHHHHHHH-HHHHTTSEEC----------
T ss_pred HcCCcCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEeeCCCCCCCCC
Confidence 45679999999999997 667777666 78889999973 3655544
No 49
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=60.79 E-value=30 Score=26.94 Aligned_cols=64 Identities=11% Similarity=0.036 Sum_probs=44.8
Q ss_pred cchHHHHHHHHHHhhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCceEEEecCCCCEEEEEee
Q 024854 87 LVPDQVLKLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFA 157 (261)
Q Consensus 87 L~~~~~~KLr~LTllsLa~~~k~Isy~~I~~~L~I~~~~evE~lvI~eAI~~gLI~GkIDQ~~~~v~V~~~ 157 (261)
|++.+.. .|..|+..+..++-.+|++.++++ ...+=..|= .....|+|.=.-|..++....-+.
T Consensus 29 Lt~~q~~-----vL~~L~~~~~~~~~~eLa~~l~~~-~~tvs~~v~-~Le~~GlV~R~~~~~DrR~~~l~L 92 (151)
T 4aik_A 29 LTQTHWV-----TLYNINRLPPEQSQIQLAKAIGIE-QPSLVRTLD-QLEEKGLITRHTSANDRRAKRIKL 92 (151)
T ss_dssp CCHHHHH-----HHHHHHHSCTTSCHHHHHHHHTSC-HHHHHHHHH-HHHHTTSEEEEECSSCTTCEEEEE
T ss_pred CCHHHHH-----HHHHHHHcCCCCcHHHHHHHHCcC-HHHHHHHHH-HHHhCCCeEeecCCCCCcchhhhc
Confidence 5655433 333444455667778999999997 777776665 888899999999887765444443
No 50
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=60.69 E-value=13 Score=29.34 Aligned_cols=48 Identities=13% Similarity=0.139 Sum_probs=37.3
Q ss_pred HHHHHhhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCceEEEe
Q 024854 95 LKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKL 145 (261)
Q Consensus 95 Lr~LTllsLa~~~k~Isy~~I~~~L~I~~~~evE~lvI~eAI~~gLI~GkI 145 (261)
++.|..+... .++.++-.+|++.++++ ..-|+.++- ..-.+|+|...=
T Consensus 17 l~~L~~La~~-~~~~~~~~~iA~~~~i~-~~~l~kil~-~L~~~Glv~s~r 64 (149)
T 1ylf_A 17 VHILSILKNN-PSSLCTSDYMAESVNTN-PVVIRKIMS-YLKQAGFVYVNR 64 (149)
T ss_dssp HHHHHHHHHS-CGGGCCHHHHHHHHTSC-HHHHHHHHH-HHHHTTSEEEC-
T ss_pred HHHHHHHHhC-CCCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCcEEEcc
Confidence 4444444432 45689999999999998 999999988 899999998643
No 51
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=60.62 E-value=28 Score=25.99 Aligned_cols=44 Identities=20% Similarity=0.110 Sum_probs=35.8
Q ss_pred CCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCceEEEecCCCCE
Q 024854 106 TNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (261)
Q Consensus 106 ~~k~Isy~~I~~~L~I~~~~evE~lvI~eAI~~gLI~GkIDQ~~~~ 151 (261)
.+..++..+|++.++++ ...|=..|= .....|+|.-.-|..++.
T Consensus 49 ~~~~~t~~~la~~l~~s-~~~vs~~l~-~L~~~glv~r~~~~~d~R 92 (146)
T 2fbh_A 49 HRDSPTQRELAQSVGVE-GPTLARLLD-GLESQGLVRRLAVAEDRR 92 (146)
T ss_dssp CSSCCBHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEECCBTTBC
T ss_pred cCCCCCHHHHHHHhCCC-hhhHHHHHH-HHHHCCCeeecCCCcccC
Confidence 45679999999999997 778887766 888899999887765444
No 52
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=59.43 E-value=29 Score=24.70 Aligned_cols=39 Identities=21% Similarity=0.252 Sum_probs=32.1
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCceEEEecCC
Q 024854 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQL 148 (261)
Q Consensus 108 k~Isy~~I~~~L~I~~~~evE~lvI~eAI~~gLI~GkIDQ~ 148 (261)
+..++.+|++.++++ ...|-.-+= .....|+|..+-+..
T Consensus 35 ~~~~~~ela~~l~is-~~tvs~~L~-~L~~~Glv~~~~~g~ 73 (98)
T 3jth_A 35 QELSVGELCAKLQLS-QSALSQHLA-WLRRDGLVTTRKEAQ 73 (98)
T ss_dssp SCEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEECCTT
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeEEEEeCC
Confidence 689999999999997 777777666 777899999875544
No 53
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=58.99 E-value=23 Score=27.06 Aligned_cols=43 Identities=16% Similarity=0.204 Sum_probs=30.1
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCceEEEecCCCCE
Q 024854 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (261)
Q Consensus 107 ~k~Isy~~I~~~L~I~~~~evE~lvI~eAI~~gLI~GkIDQ~~~~ 151 (261)
+..++..+|++.++++ ...|=..|= .....|+|.-.-|..++.
T Consensus 53 ~~~~~~~eLa~~l~~~-~~~vs~~l~-~L~~~Glv~r~~~~~D~R 95 (149)
T 4hbl_A 53 ENPQTLNSIGRHLDLS-SNTLTPMLK-RLEQSGWVKRERQQSDKR 95 (149)
T ss_dssp SSSEEHHHHHHHHTCC-HHHHHHHHH-HHHHHTSEEC--------
T ss_pred CCCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEeeCCCCCCcc
Confidence 3678999999999997 778877766 888899999887765554
No 54
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=58.22 E-value=54 Score=25.65 Aligned_cols=72 Identities=18% Similarity=0.113 Sum_probs=51.6
Q ss_pred HHHHhhhcccC-CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCceEE--EecCCCCEEEEEeecCCCCCCCcHHHHHH
Q 024854 96 KQLTVLTLAET-NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRG--KLDQLRRCFEVQFAAGRDLRPGQLGSMIQ 172 (261)
Q Consensus 96 r~LTllsLa~~-~k~Isy~~I~~~L~I~~~~evE~lvI~eAI~~gLI~G--kIDQ~~~~v~V~~~~~Rdl~~~q~~~L~~ 172 (261)
-.|-|...... ..-.+.++|++.++++ ..+|...|= ..+..|+|.= +-|..++....-+. ..+.+
T Consensus 37 lLl~L~~~~~~g~~~ps~~~LA~~~~~s-~~~v~~~L~-~L~~KGlI~i~~~~d~~g~~~~~ydL----------~pL~e 104 (135)
T 2v79_A 37 LLLKIKMHLEKGSYFPTPNQLQEGMSIS-VEECTNRLR-MFIQKGFLFIEECEDQNGIKFEKYSL----------QPLWG 104 (135)
T ss_dssp HHHHHHHHHTTTCCSCCHHHHHTTSSSC-HHHHHHHHH-HHHHHTSCEEEEEECTTCCEEEEEEC----------HHHHH
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEEeEecCCCceEEEeeH----------HHHHH
Confidence 34444554443 4668999999999997 999999988 9999999986 55666555444333 45777
Q ss_pred HHHHHHH
Q 024854 173 TLSNWLT 179 (261)
Q Consensus 173 ~L~~W~~ 179 (261)
+|..+..
T Consensus 105 kL~~~~~ 111 (135)
T 2v79_A 105 KLYEYIQ 111 (135)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776653
No 55
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=57.62 E-value=46 Score=23.29 Aligned_cols=39 Identities=26% Similarity=0.343 Sum_probs=33.5
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCceEEEecC
Q 024854 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQ 147 (261)
Q Consensus 107 ~k~Isy~~I~~~L~I~~~~evE~lvI~eAI~~gLI~GkIDQ 147 (261)
+..++..+|++.++++ ...|-..|= .....|+|...-+.
T Consensus 32 ~~~~s~~ela~~l~is-~~tv~~~l~-~L~~~glv~~~~~~ 70 (109)
T 1sfx_A 32 RGGMRVSEIARELDLS-ARFVRDRLK-VLLKRGFVRREIVE 70 (109)
T ss_dssp HCCBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEEEE
T ss_pred cCCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEEEeec
Confidence 3459999999999997 888888777 88999999988776
No 56
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=57.48 E-value=36 Score=26.60 Aligned_cols=42 Identities=12% Similarity=0.137 Sum_probs=35.0
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCceEEEecCCCC
Q 024854 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRR 150 (261)
Q Consensus 107 ~k~Isy~~I~~~L~I~~~~evE~lvI~eAI~~gLI~GkIDQ~~~ 150 (261)
....+|.+|++.++|+ ...|=..|= .....|+|..+-++.++
T Consensus 35 ~g~~~~~eLa~~lgis-~~tls~~L~-~Le~~GlI~r~~~~~d~ 76 (146)
T 2f2e_A 35 EGLTRFGEFQKSLGLA-KNILAARLR-NLVEHGVMVAVPAESGS 76 (146)
T ss_dssp TTCCSHHHHHHHHCCC-HHHHHHHHH-HHHHTTSEEEEECSSSS
T ss_pred hCCCCHHHHHHHhCCC-HHHHHHHHH-HHHHCCCEEEEecCCCC
Confidence 3578999999999997 777777666 77889999999987766
No 57
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=56.66 E-value=29 Score=27.23 Aligned_cols=49 Identities=10% Similarity=-0.006 Sum_probs=32.7
Q ss_pred ccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCceEEEecCCCCEEEE
Q 024854 104 AETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEV 154 (261)
Q Consensus 104 a~~~k~Isy~~I~~~L~I~~~~evE~lvI~eAI~~gLI~GkIDQ~~~~v~V 154 (261)
...+..++..+|++.++++ ...|=..|= .....|+|.-.-|..++....
T Consensus 63 ~~~~~~~t~~eLa~~l~i~-~~tvs~~l~-~Le~~GlV~r~~~~~DrR~~~ 111 (166)
T 3deu_A 63 HQLPPDQSQIQLAKAIGIE-QPSLVRTLD-QLEDKGLISRQTCASDRRAKR 111 (166)
T ss_dssp HHSCSSEEHHHHHHHHTSC-HHHHHHHHH-HHHHTTSEEEC--------CE
T ss_pred HHcCCCCCHHHHHHHHCCC-HhhHHHHHH-HHHHCCCEEeeCCCCCCCeeE
Confidence 3334569999999999997 777777666 888899999888776655433
No 58
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=56.62 E-value=17 Score=24.84 Aligned_cols=45 Identities=20% Similarity=0.217 Sum_probs=33.6
Q ss_pred HHHHHhhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCceEE
Q 024854 95 LKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRG 143 (261)
Q Consensus 95 Lr~LTllsLa~~~k~Isy~~I~~~L~I~~~~evE~lvI~eAI~~gLI~G 143 (261)
.+.|.++. ...+.++..+|++.|+++ ...|...|= ..-..|+|..
T Consensus 13 ~~IL~~L~--~~~~~~s~~eLA~~lgls-r~tv~~~l~-~L~~~G~I~~ 57 (67)
T 2heo_A 13 QKILQVLS--DDGGPVAIFQLVKKCQVP-KKTLNQVLY-RLKKEDRVSS 57 (67)
T ss_dssp HHHHHHHH--HHCSCEEHHHHHHHHCSC-HHHHHHHHH-HHHHTTSEEE
T ss_pred HHHHHHHH--HcCCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCcEec
Confidence 34455443 344679999999999998 888998766 7777888754
No 59
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=56.60 E-value=18 Score=28.29 Aligned_cols=34 Identities=3% Similarity=0.074 Sum_probs=30.6
Q ss_pred ChHHHHHHcCCCChHHHHHHHHHHhHhcCceEEEec
Q 024854 111 PYDELMEELDVTNVRELEDFLINECMYTGIVRGKLD 146 (261)
Q Consensus 111 sy~~I~~~L~I~~~~evE~lvI~eAI~~gLI~GkID 146 (261)
+-++|++.++|| ..-|+.++- ..-.+|||...=.
T Consensus 25 s~~~IA~~~~i~-~~~l~kIl~-~L~~aGlv~s~rG 58 (145)
T 1xd7_A 25 SSEIIADSVNTN-PVVVRRMIS-LLKKADILTSRAG 58 (145)
T ss_dssp CHHHHHHHHTSC-HHHHHHHHH-HHHHTTSEECCSS
T ss_pred CHHHHHHHHCcC-HHHHHHHHH-HHHHCCceEeecC
Confidence 999999999998 999999998 8999999976543
No 60
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=55.73 E-value=13 Score=26.63 Aligned_cols=42 Identities=12% Similarity=0.095 Sum_probs=33.3
Q ss_pred HhhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCceE
Q 024854 99 TVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVR 142 (261)
Q Consensus 99 TllsLa~~~k~Isy~~I~~~L~I~~~~evE~lvI~eAI~~gLI~ 142 (261)
.|+.+....+.++.++|++.++++ ...|..-+- .....|+|.
T Consensus 6 ~Il~~L~~~g~vsv~eLa~~l~VS-~~TIRrdL~-~Le~~G~l~ 47 (78)
T 1xn7_A 6 QVRDLLALRGRMEAAQISQTLNTP-QPMINAMLQ-QLESMGKAV 47 (78)
T ss_dssp HHHHHHHHSCSBCHHHHHHHTTCC-HHHHHHHHH-HHHHHTSEE
T ss_pred HHHHHHHHcCCCcHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEE
Confidence 455556678899999999999997 877777766 777778763
No 61
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=55.43 E-value=25 Score=27.00 Aligned_cols=81 Identities=16% Similarity=0.122 Sum_probs=50.6
Q ss_pred cchHHHHHHHHHHhhhcccCC-cccChHHHHHHcCCCChHHHHHHHHHHhHhcCceEEEecCCCCEEEEEeecCCCCCCC
Q 024854 87 LVPDQVLKLKQLTVLTLAETN-KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFAAGRDLRPG 165 (261)
Q Consensus 87 L~~~~~~KLr~LTllsLa~~~-k~Isy~~I~~~L~I~~~~evE~lvI~eAI~~gLI~GkIDQ~~~~v~V~~~~~Rdl~~~ 165 (261)
|++. .-+-.+.|......+ .-++.++|++.++++ ..+|-..|= ..+..|+|.=+-+.... ++....-
T Consensus 30 Lt~~--e~~vll~L~~~~~~~~~~ps~~~LA~~l~~s-~~~V~~~l~-~Le~kGlI~~~~~~~~~--------g~~~~~Y 97 (128)
T 2vn2_A 30 LGEG--ELVLLLHMQSFFEEGVLFPTPAELAERMTVS-AAECMEMVR-RLLQKGMIAIEEHTDEQ--------GIRNEKY 97 (128)
T ss_dssp CCHH--HHHHHHHHHHHHTTTCSSCCHHHHHHTSSSC-HHHHHHHHH-HHHHTTSSEECC------------------CE
T ss_pred CCHH--HHHHHHHHHHHHhcCCCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEEeEECCC--------CcEEEEE
Confidence 4444 333455666555433 448999999999997 999999887 89999999876664331 1111223
Q ss_pred cHHHHHHHHHHHHH
Q 024854 166 QLGSMIQTLSNWLT 179 (261)
Q Consensus 166 q~~~L~~~L~~W~~ 179 (261)
++..+.++|..+..
T Consensus 98 dl~pl~~kL~~~~~ 111 (128)
T 2vn2_A 98 TLEPLWEKLVHHLY 111 (128)
T ss_dssp ECHHHHHHHHHHHH
T ss_pred ehHHHHHHHHHHHH
Confidence 45667777776653
No 62
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=54.64 E-value=43 Score=25.81 Aligned_cols=46 Identities=13% Similarity=0.075 Sum_probs=37.1
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCceEEEecCCCCEEEEE
Q 024854 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQ 155 (261)
Q Consensus 108 k~Isy~~I~~~L~I~~~~evE~lvI~eAI~~gLI~GkIDQ~~~~v~V~ 155 (261)
..++..+|++.++++ ...|=..|= .....|+|.-.-|..++....-
T Consensus 59 ~~~t~~eLa~~l~~~-~~tvs~~l~-~Le~~Glv~r~~~~~DrR~~~l 104 (162)
T 3k0l_A 59 PNLSNAKLAERSFIK-PQSANKILQ-DLLANGWIEKAPDPTHGRRILV 104 (162)
T ss_dssp TTCCHHHHHHHHTSC-GGGHHHHHH-HHHHTTSEEEEECCSSSCCEEE
T ss_pred CCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCcCeEecCCCCcCCeeEe
Confidence 479999999999997 777777666 8888999999998766654433
No 63
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=54.03 E-value=20 Score=28.93 Aligned_cols=55 Identities=13% Similarity=0.176 Sum_probs=39.7
Q ss_pred HHHHHhhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCceEEEecCCCCEEE
Q 024854 95 LKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFE 153 (261)
Q Consensus 95 Lr~LTllsLa~~~k~Isy~~I~~~L~I~~~~evE~lvI~eAI~~gLI~GkIDQ~~~~v~ 153 (261)
+|.|..+... .+..++-.+|++.++|+ ..-|+.++- ..-.+|+|... -..++-+.
T Consensus 15 lr~l~~La~~-~~~~~s~~~IA~~~~is-~~~l~kil~-~L~~aGlv~s~-rG~~GGy~ 69 (162)
T 3k69_A 15 VHSILYLDAH-RDSKVASRELAQSLHLN-PVMIRNILS-VLHKHGYLTGT-VGKNGGYQ 69 (162)
T ss_dssp HHHHHHHHTT-TTSCBCHHHHHHHHTSC-GGGTHHHHH-HHHHTTSSEEE-CSTTCEEE
T ss_pred HHHHHHHHhC-CCCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEee-cCCCCCeE
Confidence 3444444432 35679999999999998 999999888 88899999765 33344443
No 64
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=53.78 E-value=31 Score=23.91 Aligned_cols=36 Identities=22% Similarity=0.196 Sum_probs=30.3
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCceEEE
Q 024854 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK 144 (261)
Q Consensus 107 ~k~Isy~~I~~~L~I~~~~evE~lvI~eAI~~gLI~Gk 144 (261)
...++..+|++.++++ ...|-..+- .....|+|...
T Consensus 12 ~~~~s~~eLa~~lgvs-~~tv~r~L~-~L~~~GlI~~~ 47 (81)
T 2htj_A 12 HNGGKTAEIAEALAVT-DYQARYYLL-LLEKAGMVQRS 47 (81)
T ss_dssp SCCCCHHHHHHHHTSC-HHHHHHHHH-HHHHHTSEEEE
T ss_pred cCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEe
Confidence 3569999999999997 888888777 78889999853
No 65
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=53.45 E-value=93 Score=25.54 Aligned_cols=35 Identities=23% Similarity=0.226 Sum_probs=30.3
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCceEEE
Q 024854 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK 144 (261)
Q Consensus 108 k~Isy~~I~~~L~I~~~~evE~lvI~eAI~~gLI~Gk 144 (261)
..+++.+|++.++++ ...|-..|= .....|+|.+.
T Consensus 32 ~~~s~~eLA~~lglS-~stv~~~l~-~Le~~GlI~~~ 66 (192)
T 1uly_A 32 KEMTISQLSEILGKT-PQTIYHHIE-KLKEAGLVEVK 66 (192)
T ss_dssp CCBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEE
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEE
Confidence 569999999999997 877877766 78889999987
No 66
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=53.32 E-value=36 Score=25.94 Aligned_cols=42 Identities=19% Similarity=0.199 Sum_probs=34.1
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCceEEEecCCCCE
Q 024854 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (261)
Q Consensus 108 k~Isy~~I~~~L~I~~~~evE~lvI~eAI~~gLI~GkIDQ~~~~ 151 (261)
..++..+|++.++++ ...|=..|= .....|+|.-.-|..++.
T Consensus 57 ~~~t~~ela~~l~is-~~tvs~~l~-~Le~~Gli~r~~~~~d~R 98 (154)
T 2eth_A 57 GPKKMKEIAEFLSTT-KSNVTNVVD-SLEKRGLVVREMDPVDRR 98 (154)
T ss_dssp CCBCHHHHHHHTTSC-HHHHHHHHH-HHHHTTSEEEEECTTTSS
T ss_pred CCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEeeCCCCCcc
Confidence 369999999999997 777877666 888899999887765443
No 67
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=52.96 E-value=25 Score=26.46 Aligned_cols=43 Identities=2% Similarity=-0.083 Sum_probs=29.8
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCceEEEecCCCCE
Q 024854 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (261)
Q Consensus 107 ~k~Isy~~I~~~L~I~~~~evE~lvI~eAI~~gLI~GkIDQ~~~~ 151 (261)
...++..+|++.++++ ...|=..|= .....|+|.-.-|..++.
T Consensus 52 ~~~~t~~ela~~l~~~-~~tvs~~l~-~Le~~Glv~r~~~~~D~R 94 (148)
T 3nrv_A 52 ASDCSVQKISDILGLD-KAAVSRTVK-KLEEKKYIEVNGHSEDKR 94 (148)
T ss_dssp SSSBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEC--------
T ss_pred CCCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEeecCCCCcc
Confidence 3489999999999997 777877666 888899999877665544
No 68
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=52.58 E-value=23 Score=27.29 Aligned_cols=46 Identities=13% Similarity=0.056 Sum_probs=35.1
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCceEEEecCCCCEEEE
Q 024854 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEV 154 (261)
Q Consensus 107 ~k~Isy~~I~~~L~I~~~~evE~lvI~eAI~~gLI~GkIDQ~~~~v~V 154 (261)
...++..+|++.++++ ...+=..|= .....|+|.-.-|..++....
T Consensus 62 ~~~~t~~eLa~~l~~~-~~tvs~~l~-~Le~~Glv~r~~~~~DrR~~~ 107 (159)
T 3s2w_A 62 EDGINQESLSDYLKID-KGTTARAIQ-KLVDEGYVFRQRDEKDRRSYR 107 (159)
T ss_dssp SCSEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEECC---CCEE
T ss_pred CCCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEEecCCCCCCeeE
Confidence 3568999999999997 778887766 888899999988776655433
No 69
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=52.57 E-value=20 Score=26.96 Aligned_cols=42 Identities=5% Similarity=0.015 Sum_probs=32.4
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCceEEEecCCCCE
Q 024854 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (261)
Q Consensus 108 k~Isy~~I~~~L~I~~~~evE~lvI~eAI~~gLI~GkIDQ~~~~ 151 (261)
..++..+|++.++++ ...+=..|= .....|+|.-.-|..++.
T Consensus 50 ~~~t~~eLa~~l~~~-~~~vs~~l~-~L~~~Glv~r~~~~~D~R 91 (143)
T 3oop_A 50 EPISQKEIALWTKKD-TPTVNRIVD-VLLRKELIVREISTEDRR 91 (143)
T ss_dssp SSEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEC----CC
T ss_pred CCcCHHHHHHHHCCC-HhhHHHHHH-HHHHCCCeeccCCCccCc
Confidence 678999999999997 778877766 888999999887665443
No 70
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=51.53 E-value=49 Score=25.29 Aligned_cols=43 Identities=23% Similarity=0.125 Sum_probs=33.3
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCceEEEecCCCCE
Q 024854 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (261)
Q Consensus 107 ~k~Isy~~I~~~L~I~~~~evE~lvI~eAI~~gLI~GkIDQ~~~~ 151 (261)
+..++..+|++.++++ ...|=..|= .....|+|.-.-|..++.
T Consensus 64 ~~~~t~~ela~~l~is-~~tvs~~l~-~Le~~Gli~r~~~~~d~R 106 (162)
T 3cjn_A 64 KDGLPIGTLGIFAVVE-QSTLSRALD-GLQADGLVRREVDSDDQR 106 (162)
T ss_dssp SCSEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEEC--CCS
T ss_pred CCCCCHHHHHHHHCCC-hhHHHHHHH-HHHHCCCEEecCCCCCCC
Confidence 3468999999999997 778877766 888899999887654433
No 71
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=51.50 E-value=20 Score=26.53 Aligned_cols=43 Identities=9% Similarity=0.155 Sum_probs=34.1
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCceEEEecCCCCE
Q 024854 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (261)
Q Consensus 107 ~k~Isy~~I~~~L~I~~~~evE~lvI~eAI~~gLI~GkIDQ~~~~ 151 (261)
+..++..+|++.++++ ...|-..|= .....|+|.-.-|..++.
T Consensus 45 ~~~~~~~ela~~l~~~-~~tvs~~l~-~L~~~gli~r~~~~~d~r 87 (139)
T 3bja_A 45 SGKVSMSKLIENMGCV-PSNMTTMIQ-RMKRDGYVMTEKNPNDQR 87 (139)
T ss_dssp SCSEEHHHHHHHCSSC-CTTHHHHHH-HHHHTTSEEEEECSSCTT
T ss_pred cCCcCHHHHHHHHCCC-hhHHHHHHH-HHHHCCCeeeccCCCCCc
Confidence 4569999999999997 667777665 788889999887765444
No 72
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=49.58 E-value=37 Score=25.47 Aligned_cols=46 Identities=13% Similarity=0.021 Sum_probs=33.3
Q ss_pred CCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCceEEEecCCCCEEE
Q 024854 106 TNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFE 153 (261)
Q Consensus 106 ~~k~Isy~~I~~~L~I~~~~evE~lvI~eAI~~gLI~GkIDQ~~~~v~ 153 (261)
.+..++..+|++.++++ ...|=..|= .....|+|.-.-|..++...
T Consensus 47 ~~~~~t~~eLa~~l~~~-~~tvs~~l~-~L~~~Glv~r~~~~~D~R~~ 92 (140)
T 3hsr_A 47 NDEKLNIKKLGERVFLD-SGTLTPLLK-KLEKKDYVVRTREEKDERNL 92 (140)
T ss_dssp TTCEEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEC-------C
T ss_pred HcCCcCHHHHHHHHCCC-hhhHHHHHH-HHHHCCCeEecCCCCCccee
Confidence 35689999999999997 778887766 88899999988877665443
No 73
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=49.25 E-value=31 Score=25.93 Aligned_cols=43 Identities=19% Similarity=0.181 Sum_probs=33.6
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCceEEEecCCCCEE
Q 024854 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCF 152 (261)
Q Consensus 108 k~Isy~~I~~~L~I~~~~evE~lvI~eAI~~gLI~GkIDQ~~~~v 152 (261)
..++..+|++.++++ ...|=..|= .....|+|.-.-|..++..
T Consensus 55 ~~~t~~ela~~l~~~-~~tvs~~l~-~Le~~Glv~r~~~~~d~R~ 97 (150)
T 2rdp_A 55 GDLTVGELSNKMYLA-CSTTTDLVD-RMERNGLVARVRDEHDRRV 97 (150)
T ss_dssp CSBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEECCC---C
T ss_pred CCCCHHHHHHHHCCC-chhHHHHHH-HHHHCCCeeecCCCCCcce
Confidence 469999999999997 778887766 8888999998877655543
No 74
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=48.94 E-value=21 Score=27.64 Aligned_cols=37 Identities=16% Similarity=0.234 Sum_probs=30.9
Q ss_pred CCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCceEEE
Q 024854 106 TNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK 144 (261)
Q Consensus 106 ~~k~Isy~~I~~~L~I~~~~evE~lvI~eAI~~gLI~Gk 144 (261)
.+..+|+.+|++.++++ ...+=..|= .....|+|.+.
T Consensus 18 ~~~~~s~~ela~~lg~s-~~tv~~~l~-~L~~~G~i~~~ 54 (150)
T 2w25_A 18 ADGRATLSELATRAGLS-VSAVQSRVR-RLESRGVVQGY 54 (150)
T ss_dssp HCTTCCHHHHHHHHTSC-HHHHHHHHH-HHHHTTSEEEE
T ss_pred HcCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEE
Confidence 34569999999999997 888887777 88889999754
No 75
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=47.63 E-value=54 Score=23.42 Aligned_cols=40 Identities=18% Similarity=0.160 Sum_probs=31.5
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCceEEEecCCC
Q 024854 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLR 149 (261)
Q Consensus 108 k~Isy~~I~~~L~I~~~~evE~lvI~eAI~~gLI~GkIDQ~~ 149 (261)
+..++.+|++.++++ ...|-.-+= .....|+|..+-+...
T Consensus 35 ~~~~~~ela~~l~is-~~tvs~~L~-~L~~~Glv~~~~~g~~ 74 (102)
T 3pqk_A 35 GEFSVGELEQQIGIG-QPTLSQQLG-VLRESGIVETRRNIKQ 74 (102)
T ss_dssp CCBCHHHHHHHHTCC-TTHHHHHHH-HHHHTTSEEEECSSSC
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeEEEEeCCE
Confidence 458999999999998 667766666 6778899998766543
No 76
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=47.51 E-value=14 Score=27.20 Aligned_cols=44 Identities=14% Similarity=0.076 Sum_probs=35.1
Q ss_pred HhhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCceEEE
Q 024854 99 TVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK 144 (261)
Q Consensus 99 TllsLa~~~k~Isy~~I~~~L~I~~~~evE~lvI~eAI~~gLI~Gk 144 (261)
.|+.+....+.++.++|++.++++ ...|..-|- .....|+|.=.
T Consensus 6 ~Il~~L~~~g~vsv~eLA~~l~VS-~~TIRrDL~-~Le~~G~l~R~ 49 (87)
T 2k02_A 6 EVRDMLALQGRMEAKQLSARLQTP-QPLIDAMLE-RMEAMGKVVRI 49 (87)
T ss_dssp HHHHHHHHSCSEEHHHHHHHTTCC-HHHHHHHHH-HHHTTCCSEEE
T ss_pred HHHHHHHHcCCCcHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEE
Confidence 355555678899999999999997 888887777 78888877644
No 77
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=47.40 E-value=15 Score=26.26 Aligned_cols=34 Identities=6% Similarity=0.222 Sum_probs=29.0
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCceE
Q 024854 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVR 142 (261)
Q Consensus 107 ~k~Isy~~I~~~L~I~~~~evE~lvI~eAI~~gLI~ 142 (261)
+...+..+|+++++|+ ...|..-|- ..-..|+|.
T Consensus 22 g~~psv~EIa~~lgvS-~~TVrr~L~-~Le~kG~I~ 55 (77)
T 2jt1_A 22 GAPVKTRDIADAAGLS-IYQVRLYLE-QLHDVGVLE 55 (77)
T ss_dssp TSCEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEE
T ss_pred CCCcCHHHHHHHHCCC-HHHHHHHHH-HHHHCCcEE
Confidence 4789999999999995 888888887 777788875
No 78
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=46.69 E-value=49 Score=24.50 Aligned_cols=44 Identities=11% Similarity=0.095 Sum_probs=34.9
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCceEEEecCCCCEEE
Q 024854 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFE 153 (261)
Q Consensus 108 k~Isy~~I~~~L~I~~~~evE~lvI~eAI~~gLI~GkIDQ~~~~v~ 153 (261)
..++..+|++.++++ ...+=..|= .....|+|.-.-|..++...
T Consensus 46 ~~~t~~ela~~l~~~-~~tvs~~l~-~Le~~Gli~r~~~~~D~R~~ 89 (139)
T 3eco_A 46 DGLTQNDIAKALQRT-GPTVSNLLR-NLERKKLIYRYVDAQDTRRK 89 (139)
T ss_dssp TCEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEECCC--CCE
T ss_pred CCcCHHHHHHHhCCC-cccHHHHHH-HHHHCCCEeecCCCCCCCee
Confidence 579999999999997 778887766 88889999988887655433
No 79
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=46.47 E-value=1.2e+02 Score=25.01 Aligned_cols=38 Identities=18% Similarity=0.275 Sum_probs=32.0
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCceEEEecC
Q 024854 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQ 147 (261)
Q Consensus 108 k~Isy~~I~~~L~I~~~~evE~lvI~eAI~~gLI~GkIDQ 147 (261)
+..++.+|++.++++ ...|=..+= .....|+|...-+.
T Consensus 27 ~~~s~~eLa~~l~is-~stvs~hLk-~Le~~GLV~~~~~~ 64 (202)
T 2p4w_A 27 RPYFVSELSRELGVG-QKAVLEHLR-ILEEAGLIESRVEK 64 (202)
T ss_dssp SCEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEECC
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCceEEEeec
Confidence 568999999999997 777777766 78889999998773
No 80
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=45.82 E-value=36 Score=25.75 Aligned_cols=42 Identities=12% Similarity=0.126 Sum_probs=34.5
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCceEEEecCCCC
Q 024854 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRR 150 (261)
Q Consensus 107 ~k~Isy~~I~~~L~I~~~~evE~lvI~eAI~~gLI~GkIDQ~~~ 150 (261)
+..++..+|++.++++ ...|-..|= .....|+|.-.-|..++
T Consensus 49 ~~~~t~~ela~~l~~s-~~tvs~~l~-~Le~~glv~r~~~~~d~ 90 (155)
T 1s3j_A 49 HGSLKVSEIAERMEVK-PSAVTLMAD-RLEQKNLIARTHNTKDR 90 (155)
T ss_dssp HSEEEHHHHHHHHTSC-HHHHHHHHH-HHHHTTSEEEEECSSCT
T ss_pred cCCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEeecCCCCCC
Confidence 3468999999999997 888887766 88889999988776444
No 81
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=45.60 E-value=28 Score=26.22 Aligned_cols=38 Identities=18% Similarity=0.204 Sum_probs=30.2
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCceEEEec
Q 024854 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLD 146 (261)
Q Consensus 107 ~k~Isy~~I~~~L~I~~~~evE~lvI~eAI~~gLI~GkID 146 (261)
.+.+++.+|++.++++ ...|-..|= .....|+|...=+
T Consensus 54 ~~~~s~~eLa~~l~is-~stvs~~L~-~L~~~Glv~~~~~ 91 (122)
T 1u2w_A 54 DEELCVCDIANILGVT-IANASHHLR-TLYKQGVVNFRKE 91 (122)
T ss_dssp SSCEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEC--
T ss_pred CCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeEEEEE
Confidence 4568999999999997 888887766 6778999987543
No 82
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=45.17 E-value=32 Score=24.42 Aligned_cols=45 Identities=13% Similarity=0.223 Sum_probs=32.7
Q ss_pred HHHHhhh-cccCCcccChHHHHHHcCCCChHH-HHHHHHHHhHhcCceE
Q 024854 96 KQLTVLT-LAETNKVLPYDELMEELDVTNVRE-LEDFLINECMYTGIVR 142 (261)
Q Consensus 96 r~LTlls-La~~~k~Isy~~I~~~L~I~~~~e-vE~lvI~eAI~~gLI~ 142 (261)
+.+.++. +...+..++..+|++.++++ ... +=..|= .....|+|.
T Consensus 16 ~~l~~L~~l~~~~~~~t~~eLa~~l~is-~~t~vs~~l~-~Le~~Glv~ 62 (95)
T 2pg4_A 16 RILPTLLEFEKKGYEPSLAEIVKASGVS-EKTFFMGLKD-RLIRAGLVK 62 (95)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHCCC-HHHHHTTHHH-HHHHTTSEE
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHCCC-chHHHHHHHH-HHHHCCCee
Confidence 3343433 33444479999999999997 767 776665 788899998
No 83
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=44.90 E-value=86 Score=22.96 Aligned_cols=45 Identities=13% Similarity=0.006 Sum_probs=36.6
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCceEEEecCCCCEEEE
Q 024854 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEV 154 (261)
Q Consensus 108 k~Isy~~I~~~L~I~~~~evE~lvI~eAI~~gLI~GkIDQ~~~~v~V 154 (261)
..++..+|++.++++ ...|-..|= .....|+|.-.-|..++....
T Consensus 49 ~~~t~~ela~~l~~s-~~~vs~~l~-~Le~~glv~r~~~~~d~R~~~ 93 (142)
T 2fbi_A 49 GEMESYQLANQACIL-RPSMTGVLA-RLERDGIVRRWKAPKDQRRVY 93 (142)
T ss_dssp CSEEHHHHHHHTTCC-HHHHHHHHH-HHHHTTSEEEEEETTEEEEEE
T ss_pred CCCCHHHHHHHHCCC-HhHHHHHHH-HHHHCCCEEeecCCCCCCeeE
Confidence 359999999999997 888888776 888999999888876655433
No 84
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=44.53 E-value=43 Score=27.18 Aligned_cols=50 Identities=16% Similarity=0.181 Sum_probs=35.6
Q ss_pred HHHHHHHHhhhccc-CCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCc-eEE
Q 024854 92 VLKLKQLTVLTLAE-TNKVLPYDELMEELDVTNVRELEDFLINECMYTGI-VRG 143 (261)
Q Consensus 92 ~~KLr~LTllsLa~-~~k~Isy~~I~~~L~I~~~~evE~lvI~eAI~~gL-I~G 143 (261)
...-|...|+.+.. .++.++..+|++.|+++ .+.|-.-|- ..-..|+ |.+
T Consensus 18 ~~~~R~~~Il~~L~~~~~~~s~~eLa~~l~vS-~~Ti~rdi~-~L~~~G~~I~~ 69 (187)
T 1j5y_A 18 VRQERLKSIVRILERSKEPVSGAQLAEELSVS-RQVIVQDIA-YLRSLGYNIVA 69 (187)
T ss_dssp HHHHHHHHHHHHHHHCSSCBCHHHHHHHHTSC-HHHHHHHHH-HHHHHTCCCEE
T ss_pred hHHHHHHHHHHHHHHcCCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeEEE
Confidence 34456677776655 45779999999999997 777666554 4445687 775
No 85
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=44.17 E-value=73 Score=23.81 Aligned_cols=41 Identities=12% Similarity=0.144 Sum_probs=33.9
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCceEEEecCCCC
Q 024854 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRR 150 (261)
Q Consensus 108 k~Isy~~I~~~L~I~~~~evE~lvI~eAI~~gLI~GkIDQ~~~ 150 (261)
..++..+|++.++++ ...|-..|= .....|+|.-.-|..++
T Consensus 53 ~~~t~~ela~~l~~~-~~~vs~~l~-~Le~~Glv~r~~~~~d~ 93 (152)
T 3bj6_A 53 PGATAPQLGAALQMK-RQYISRILQ-EVQRAGLIERRTNPEHA 93 (152)
T ss_dssp TTEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEECCSSST
T ss_pred CCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCeeecCCcccc
Confidence 468999999999997 878887766 88889999988776444
No 86
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=43.60 E-value=39 Score=24.59 Aligned_cols=38 Identities=11% Similarity=0.107 Sum_probs=30.9
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCceEEEecC
Q 024854 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQ 147 (261)
Q Consensus 108 k~Isy~~I~~~L~I~~~~evE~lvI~eAI~~gLI~GkIDQ 147 (261)
+.+++.+|++.++++ ...|-..+= .....|+|..+=+.
T Consensus 38 ~~~~~~ela~~l~is-~stvs~~L~-~L~~~Glv~~~~~g 75 (106)
T 1r1u_A 38 SEASVGHISHQLNLS-QSNVSHQLK-LLKSVHLVKAKRQG 75 (106)
T ss_dssp CCBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEEET
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeEEEEeC
Confidence 458999999999997 778877766 67788999877543
No 87
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=43.51 E-value=50 Score=24.25 Aligned_cols=44 Identities=9% Similarity=0.023 Sum_probs=36.3
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCceEEEecCCCCEEE
Q 024854 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFE 153 (261)
Q Consensus 108 k~Isy~~I~~~L~I~~~~evE~lvI~eAI~~gLI~GkIDQ~~~~v~ 153 (261)
..++..+|++.++++ ...|-..|= .....|+|.-.-|..++...
T Consensus 51 ~~~t~~ela~~l~~~-~~tvs~~l~-~L~~~glv~r~~~~~d~R~~ 94 (140)
T 2nnn_A 51 GPCPQNQLGRLTAMD-AATIKGVVE-RLDKRGLIQRSADPDDGRRL 94 (140)
T ss_dssp SSBCHHHHHHHTTCC-HHHHHHHHH-HHHHTTCEEEEEETTEEEEE
T ss_pred CCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEeeCCCCCCCee
Confidence 479999999999997 888888776 88899999988877655543
No 88
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=42.57 E-value=92 Score=24.48 Aligned_cols=97 Identities=10% Similarity=0.106 Sum_probs=52.7
Q ss_pred ccChHHHHHHcCCCChHHHHHHHHHHhHhcCceE-EEecCCCCEEEEEeecCCCCCCCcHHH----------------HH
Q 024854 109 VLPYDELMEELDVTNVRELEDFLINECMYTGIVR-GKLDQLRRCFEVQFAAGRDLRPGQLGS----------------MI 171 (261)
Q Consensus 109 ~Isy~~I~~~L~I~~~~evE~lvI~eAI~~gLI~-GkIDQ~~~~v~V~~~~~Rdl~~~q~~~----------------L~ 171 (261)
.++..++++.+||+ .+.|-.|-= .||+. ..-+..+. |.++.+++.. +.
T Consensus 16 ~~~I~evA~~~gvs-~~tLR~Ye~-----~Gll~p~~r~~~g~---------R~Y~~~dl~~l~~I~~lr~~G~sL~eIk 80 (148)
T 3gpv_A 16 YYTIGQVAKMQHLT-ISQIRYYDK-----QGLFPFLQRNEKGD---------RIFNEEALKYLEMILCLKNTGMPIQKIK 80 (148)
T ss_dssp CBCHHHHHHHTTCC-HHHHHHHHH-----TTCCTTCEECTTCC---------EEBCHHHHHHHHHHHHHHTTTCCHHHHH
T ss_pred ceeHHHHHHHHCcC-HHHHHHHHH-----CCCCCCCcCCCCCC---------eecCHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 58899999999998 888887732 58885 44454333 3333343332 22
Q ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhc
Q 024854 172 QTLSNWL---TTSDNLLISIQEKIKWADSMNEMDKKHRKDLEEKVEEAKKSL 220 (261)
Q Consensus 172 ~~L~~W~---~~~~~~l~~ie~~i~~a~~~~~~~~~~~~~~~~~~~~~kk~~ 220 (261)
.-|..|. ..+......++++........+.-.+..+.++..++..+..+
T Consensus 81 ~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~ 132 (148)
T 3gpv_A 81 QFIDWSMEGDSTILHRLKLMKQQEANVLQLIQDTEKNLKKIQQKIAKYEDEI 132 (148)
T ss_dssp HHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222221 234455555555555555555555555555566655555554
No 89
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=42.16 E-value=32 Score=26.30 Aligned_cols=43 Identities=9% Similarity=0.047 Sum_probs=30.0
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCceEEEecCCCCE
Q 024854 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (261)
Q Consensus 107 ~k~Isy~~I~~~L~I~~~~evE~lvI~eAI~~gLI~GkIDQ~~~~ 151 (261)
+..++..+|++.++++ ...|=..|= .....|+|.-.-|..++.
T Consensus 61 ~~~~t~~ela~~l~is-~~tvs~~l~-~Le~~glv~r~~~~~d~R 103 (162)
T 2fa5_A 61 YPGSSASEVSDRTAMD-KVAVSRAVA-RLLERGFIRRETHGDDRR 103 (162)
T ss_dssp STTCCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEC--------
T ss_pred CCCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEeeecCCCCCC
Confidence 4579999999999997 778887766 888899999776655443
No 90
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=41.92 E-value=32 Score=26.29 Aligned_cols=45 Identities=18% Similarity=0.189 Sum_probs=30.3
Q ss_pred cCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCceEEEecCCCCE
Q 024854 105 ETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (261)
Q Consensus 105 ~~~k~Isy~~I~~~L~I~~~~evE~lvI~eAI~~gLI~GkIDQ~~~~ 151 (261)
..+..++..+|++.++++ ...|=..|= .....|+|.-.-|..++.
T Consensus 58 ~~~~~~~~~ela~~l~i~-~~tvs~~l~-~Le~~Gli~r~~~~~d~R 102 (160)
T 3boq_A 58 RNPDGLSMGKLSGALKVT-NGNVSGLVN-RLIKDGMVVKAMSADDRR 102 (160)
T ss_dssp HCTTCEEHHHHHHHCSSC-CSCHHHHHH-HHHHHTSEEEC-------
T ss_pred HcCCCCCHHHHHHHHCCC-hhhHHHHHH-HHHHCCCEEeecCCCCCC
Confidence 345579999999999997 666666655 777889999877665444
No 91
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=41.46 E-value=1e+02 Score=22.62 Aligned_cols=55 Identities=24% Similarity=0.257 Sum_probs=39.3
Q ss_pred HHHhhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCceEEEecCCCC-EEEEE
Q 024854 97 QLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRR-CFEVQ 155 (261)
Q Consensus 97 ~LTllsLa~~~k~Isy~~I~~~L~I~~~~evE~lvI~eAI~~gLI~GkIDQ~~~-~v~V~ 155 (261)
.|.++.+. ...++..+|++.++++ ...+=..|= .....|+|.-.-|..++ .+.+.
T Consensus 31 il~~L~~~--~~~~t~~ela~~l~~~-~stvs~~l~-~L~~~G~v~r~~~~~d~r~~~~~ 86 (152)
T 1ku9_A 31 VYAILYLS--DKPLTISDIMEELKIS-KGNVSMSLK-KLEELGFVRKVWIKGERKNYYEA 86 (152)
T ss_dssp HHHHHHHC--SSCEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEECCTTCSSCEEEE
T ss_pred HHHHHHHc--CCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEEecCCCceEEEee
Confidence 34444333 2569999999999997 777777666 78889999988766544 44443
No 92
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=39.30 E-value=38 Score=25.31 Aligned_cols=43 Identities=16% Similarity=0.188 Sum_probs=29.2
Q ss_pred cChHHHHHHcCCCChHHHHHHHHHHhHhcCceEEEecCCCCEEEE
Q 024854 110 LPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEV 154 (261)
Q Consensus 110 Isy~~I~~~L~I~~~~evE~lvI~eAI~~gLI~GkIDQ~~~~v~V 154 (261)
++..+|++.++++ ...|=..|= .....|+|.-.-|..++....
T Consensus 52 ~t~~eLa~~l~~s-~~tvs~~l~-~L~~~Glv~r~~~~~d~R~~~ 94 (146)
T 3tgn_A 52 LTNSELARRLNVS-QAAVTKAIK-SLVKEGMLETSKDSKDARVIF 94 (146)
T ss_dssp CCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEC----------C
T ss_pred CCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCeEeccCCCCCceeE
Confidence 9999999999997 778887776 888999999988766665443
No 93
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=38.92 E-value=82 Score=24.80 Aligned_cols=61 Identities=13% Similarity=0.217 Sum_probs=40.5
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCceEEEecCCCCEEEEEeecCCCCCCCcHHHHHHHHHHH
Q 024854 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFAAGRDLRPGQLGSMIQTLSNW 177 (261)
Q Consensus 107 ~k~Isy~~I~~~L~I~~~~evE~lvI~eAI~~gLI~GkIDQ~~~~v~V~~~~~Rdl~~~q~~~L~~~L~~W 177 (261)
.+..+..+|++.|+++ ...|=.-|= ....+|+|..+-+.....+.+ +++.+..+.+.+..|
T Consensus 69 ~~~~t~~eLa~~lgls-~stvs~hL~-~L~~aGlV~~~~~Gr~~~y~l--------t~~~~~~l~~~l~~~ 129 (151)
T 3f6v_A 69 SGEQTVNNLAAHFPAS-RSAISQHLR-VLTEAGLVTPRKDGRFRYYRL--------DPQGLAQLRALFDSF 129 (151)
T ss_dssp GCCEEHHHHHTTSSSC-HHHHHHHHH-HHHHTTSEEEEEETTEEEEEE--------CHHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEEecCCEEEEEE--------ChHHHHHHHHHHHHH
Confidence 3568999999999997 777776666 677889999876544322222 224455555555543
No 94
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=37.59 E-value=1e+02 Score=21.57 Aligned_cols=45 Identities=13% Similarity=0.141 Sum_probs=34.2
Q ss_pred CcccChHHH----HHHcCCCChHHHHHHHHHHhHhcCceEEEecCCCCEEE
Q 024854 107 NKVLPYDEL----MEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFE 153 (261)
Q Consensus 107 ~k~Isy~~I----~~~L~I~~~~evE~lvI~eAI~~gLI~GkIDQ~~~~v~ 153 (261)
...++..+| ++.++++ ...|=..|= .....|+|.-.-|.....+.
T Consensus 20 ~~~~~~~el~~~la~~l~is-~~tvs~~l~-~Le~~gli~r~~~~r~~~~~ 68 (99)
T 1tbx_A 20 NEGIATYDLYKKVNAEFPMS-TATFYDAKK-FLIQEGFVKERQERGEKRLY 68 (99)
T ss_dssp CTTCBHHHHHHHHHTTSCCC-HHHHHHHHH-HHHHTTSEEEEEETTEEEEE
T ss_pred cCCcCHHHHHHHHHHHcCCC-HHHHHHHHH-HHHHCCCEEEEecCCceEEE
Confidence 466899999 8999997 777777665 77778999988887433333
No 95
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=37.36 E-value=37 Score=25.38 Aligned_cols=40 Identities=18% Similarity=0.213 Sum_probs=33.2
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCceEEEecCCC
Q 024854 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLR 149 (261)
Q Consensus 108 k~Isy~~I~~~L~I~~~~evE~lvI~eAI~~gLI~GkIDQ~~ 149 (261)
..++..+|++.++++ ...|-..|= .....|+|.-.-|..+
T Consensus 53 ~~~~~~~la~~l~~~-~~tvs~~l~-~L~~~glv~r~~~~~d 92 (147)
T 1z91_A 53 ETLTVKKMGEQLYLD-SGTLTPMLK-RMEQQGLITRKRSEED 92 (147)
T ss_dssp SEEEHHHHHHTTTCC-HHHHHHHHH-HHHHHTSEECCBCSSC
T ss_pred CCCCHHHHHHHHCCC-cCcHHHHHH-HHHHCCCEEeccCCCC
Confidence 478999999999997 888887766 8888999998776543
No 96
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=37.22 E-value=33 Score=31.46 Aligned_cols=72 Identities=14% Similarity=0.124 Sum_probs=39.4
Q ss_pred cCChhhHhhhhCCCC-C-cchHHHHHHHHHHhhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCceEEE
Q 024854 71 HGTWSDYKNNAGHLP-Q-LVPDQVLKLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK 144 (261)
Q Consensus 71 ~Gt~~dy~~~~~~l~-~-L~~~~~~KLr~LTllsLa~~~k~Isy~~I~~~L~I~~~~evE~lvI~eAI~~gLI~Gk 144 (261)
-|||.-|-+++.... . -+...++..-...|+.+...+..+|..+|++.++++ ...|-.+|= +.+..|+|...
T Consensus 13 ~~~~~~~~~~~~m~~~~~~~~~~~r~~n~~~il~~l~~~~~~sr~ela~~~gls-~~tv~~~v~-~L~~~gli~~~ 86 (429)
T 1z05_A 13 LGTENLYFQSNAMYMAQPGHIDHIKQINAGRVYKLIDQKGPISRIDLSKESELA-PASITKITR-ELIDAHLIHET 86 (429)
T ss_dssp ---------------------CHHHHHHHHHHHHHHHHHCSBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEE
T ss_pred cCccceeeehhhhhcccCCCHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEec
Confidence 366666665543221 1 122223444444566666667789999999999997 888888766 88889998753
No 97
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=36.97 E-value=85 Score=23.29 Aligned_cols=43 Identities=16% Similarity=0.106 Sum_probs=32.0
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCceEEEecCCCCE
Q 024854 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (261)
Q Consensus 107 ~k~Isy~~I~~~L~I~~~~evE~lvI~eAI~~gLI~GkIDQ~~~~ 151 (261)
+..++..+|++.++++ ...|=..|= .....|+|.-.-|..++.
T Consensus 48 ~~~~~~~~la~~l~i~-~~~vs~~l~-~Le~~glv~r~~~~~d~R 90 (147)
T 2hr3_A 48 GGDVTPSELAAAERMR-SSNLAALLR-ELERGGLIVRHADPQDGR 90 (147)
T ss_dssp TSCBCHHHHHHHTTCC-HHHHHHHHH-HHHHTTSEEEEC------
T ss_pred CCCCCHHHHHHHhCCC-hhhHHHHHH-HHHHCCCEeeCCCCCCCC
Confidence 5679999999999997 778887766 888899999887765443
No 98
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=36.77 E-value=65 Score=23.67 Aligned_cols=44 Identities=18% Similarity=0.089 Sum_probs=35.7
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCceEEEecCCCCEEE
Q 024854 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFE 153 (261)
Q Consensus 108 k~Isy~~I~~~L~I~~~~evE~lvI~eAI~~gLI~GkIDQ~~~~v~ 153 (261)
..++..+|++.++++ ...|=..|= .....|+|.-.-|..++...
T Consensus 47 ~~~~~~~la~~l~~~-~~tvs~~l~-~L~~~gli~r~~~~~d~R~~ 90 (138)
T 1jgs_A 47 ACITPVELKKVLSVD-LGALTRMLD-RLVCKGWVERLPNPNDKRGV 90 (138)
T ss_dssp SSBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEECTTCSSCE
T ss_pred CCCCHHHHHHHHCCC-hHHHHHHHH-HHHHCCCEEecCCcccCcee
Confidence 468999999999997 778887666 88899999998887655433
No 99
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=36.25 E-value=1.3e+02 Score=22.29 Aligned_cols=55 Identities=13% Similarity=0.175 Sum_probs=39.5
Q ss_pred CcchHHHHHHHHHHhhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCceEEE
Q 024854 86 QLVPDQVLKLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK 144 (261)
Q Consensus 86 ~L~~~~~~KLr~LTllsLa~~~k~Isy~~I~~~L~I~~~~evE~lvI~eAI~~gLI~Gk 144 (261)
.|++.+..-|+ .|..++..+..++..+|++.++++ ...|=..|= .....|+|.-.
T Consensus 10 ~lt~~~~~~L~--~l~~l~~~~~~~s~~ela~~l~is-~~tv~~~l~-~Le~~Gli~r~ 64 (139)
T 2x4h_A 10 NLSRREFSYLL--TIKRYNDSGEGAKINRIAKDLKIA-PSSVFEEVS-HLEEKGLVKKK 64 (139)
T ss_dssp -CCHHHHHHHH--HHHHHHTTTSCBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEE
T ss_pred hcCHHHHHHHH--HHHHHHhcCCCcCHHHHHHHhCCC-hHHHHHHHH-HHHHCCCEEec
Confidence 46655555444 344555667789999999999997 777777666 77778998753
No 100
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=35.47 E-value=1e+02 Score=24.14 Aligned_cols=28 Identities=18% Similarity=0.252 Sum_probs=22.2
Q ss_pred cChHHHHHHcCCCChHHHHHHHHHHhHhcCceEE
Q 024854 110 LPYDELMEELDVTNVRELEDFLINECMYTGIVRG 143 (261)
Q Consensus 110 Isy~~I~~~L~I~~~~evE~lvI~eAI~~gLI~G 143 (261)
++..++++.+||+ .+.|-.|-= .|||.-
T Consensus 3 ~~I~e~A~~~gvs-~~tLR~Ye~-----~GLl~p 30 (142)
T 3gp4_A 3 LNIKEASEKSGVS-ADTIRYYER-----IGLIPP 30 (142)
T ss_dssp BCHHHHHHHHTSC-HHHHHHHHH-----HTSSCC
T ss_pred CcHHHHHHHHCcC-HHHHHHHHH-----CCCCCC
Confidence 5788999999998 888887733 388765
No 101
>1rz4_A Eukaryotic translation initiation factor 3 subuni; heat analogous motif, winged-helix, biosynthetic protein; 2.10A {Homo sapiens} SCOP: a.4.5.53 a.118.1.18
Probab=35.27 E-value=2.1e+02 Score=24.30 Aligned_cols=78 Identities=10% Similarity=0.031 Sum_probs=51.4
Q ss_pred CCCchHHHHHHHHHhcCChhhHhhhhCCCCCcch---HHHHHHHHHHhhhcccCCcccChHHHHHHcCCCChHHHHHHHH
Q 024854 56 GTENSKYLDMLRLFAHGTWSDYKNNAGHLPQLVP---DQVLKLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLI 132 (261)
Q Consensus 56 ~~~~~~~~~LL~iFa~Gt~~dy~~~~~~l~~L~~---~~~~KLr~LTllsLa~~~k~Isy~~I~~~L~I~~~~evE~lvI 132 (261)
+.+-..++.|=+.+-.|+|..|.+....-+.+.+ .-...+|.=..-.+......||.+.+++-|+..+..+++.|+-
T Consensus 96 ~~~I~~i~~L~~~L~~~~y~~fW~~l~~~~~l~~~i~gf~dsIR~~I~~~i~~aY~sI~~~~la~lLg~~s~~el~~fi~ 175 (226)
T 1rz4_A 96 ERPIRQILYLGDLLETCHFQAFWQALDENMDLLEGITGFEDSVRKFICHVVGITYQHIDRWLLAEMLGDLSDSQLKVWMS 175 (226)
T ss_dssp STTHHHHHHHHHHHHTTCHHHHHHHSCTTCHHHHTSTTHHHHHHHHHHHHHHHHCSEECHHHHHHHTTSCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHhcChhHHHHHhHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHcCCCHHHHHHHHH
Confidence 3456778889999999999998764322232221 1223344422333334688999999999996445899999988
Q ss_pred HH
Q 024854 133 NE 134 (261)
Q Consensus 133 ~e 134 (261)
+
T Consensus 176 -~ 176 (226)
T 1rz4_A 176 -K 176 (226)
T ss_dssp -H
T ss_pred -H
Confidence 5
No 102
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=34.78 E-value=87 Score=23.51 Aligned_cols=43 Identities=16% Similarity=0.104 Sum_probs=31.6
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCceEEEecCCCCE
Q 024854 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (261)
Q Consensus 107 ~k~Isy~~I~~~L~I~~~~evE~lvI~eAI~~gLI~GkIDQ~~~~ 151 (261)
+..++..+|++.++++ ...|=..|= .....|+|.-.-|..++.
T Consensus 59 ~~~~t~~ela~~l~~s-~~tvs~~l~-~Le~~glv~r~~~~~d~R 101 (153)
T 2pex_A 59 TDERSVSEIGERLYLD-SATLTPLLK-RLQAAGLVTRTRAASDER 101 (153)
T ss_dssp SCSEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEC------
T ss_pred CCCcCHHHHHHHhCCC-cccHHHHHH-HHHHCCCEeecCCcccCC
Confidence 3568999999999997 778887766 888999999877654443
No 103
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=33.95 E-value=40 Score=22.37 Aligned_cols=28 Identities=18% Similarity=0.311 Sum_probs=23.8
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhH
Q 024854 107 NKVLPYDELMEELDVTNVRELEDFLINECM 136 (261)
Q Consensus 107 ~k~Isy~~I~~~L~I~~~~evE~lvI~eAI 136 (261)
....||.+|++.++++ ...|...+- .|+
T Consensus 23 ~~g~s~~eIA~~lgis-~~tV~~~~~-ra~ 50 (68)
T 2p7v_B 23 NTDYTLEEVGKQFDVT-RERIRQIEA-KAL 50 (68)
T ss_dssp SSCCCHHHHHHHHTCC-HHHHHHHHH-HHH
T ss_pred CCCCCHHHHHHHHCcC-HHHHHHHHH-HHH
Confidence 3568999999999997 889988877 665
No 104
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=33.92 E-value=1.4e+02 Score=21.82 Aligned_cols=41 Identities=10% Similarity=0.049 Sum_probs=34.0
Q ss_pred ccChHHHHHHcCCCChHHHHHHHHHHhHhcCceEEEecCCCCE
Q 024854 109 VLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (261)
Q Consensus 109 ~Isy~~I~~~L~I~~~~evE~lvI~eAI~~gLI~GkIDQ~~~~ 151 (261)
.++..+|++.++++ ...|=..|= .....|+|.-.-|..++.
T Consensus 50 ~~~~~ela~~l~~~-~~tvs~~l~-~Le~~Gli~r~~~~~d~R 90 (141)
T 3bro_A 50 EVLQRDLESEFSIK-SSTATVLLQ-RMEIKKLLYRKVSGKDSR 90 (141)
T ss_dssp CCBHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEECSSCTT
T ss_pred CcCHHHHHHHHCCC-cchHHHHHH-HHHHCCCEEeeCCCcCCC
Confidence 79999999999997 778887766 888899999887765443
No 105
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=33.64 E-value=62 Score=23.81 Aligned_cols=42 Identities=17% Similarity=0.060 Sum_probs=34.7
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCceEEEecCCCCE
Q 024854 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (261)
Q Consensus 108 k~Isy~~I~~~L~I~~~~evE~lvI~eAI~~gLI~GkIDQ~~~~ 151 (261)
..++..+|++.++++ ...|-..|= .....|+|.-.-+..++.
T Consensus 44 ~~~~~~ela~~l~is-~~~vs~~l~-~L~~~gli~~~~~~~d~r 85 (142)
T 3bdd_A 44 APLHQLALQERLQID-RAAVTRHLK-LLEESGYIIRKRNPDNQR 85 (142)
T ss_dssp CSBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEECSSSTT
T ss_pred CCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEecCCCCCCC
Confidence 469999999999997 888887766 888899999888765443
No 106
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=31.70 E-value=69 Score=22.64 Aligned_cols=35 Identities=17% Similarity=0.120 Sum_probs=29.1
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCceEEE
Q 024854 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK 144 (261)
Q Consensus 108 k~Isy~~I~~~L~I~~~~evE~lvI~eAI~~gLI~Gk 144 (261)
..+++.+|++.++++ ...|-..|= .....|+|.-.
T Consensus 42 ~~~~~~eLa~~l~is-~~tv~~~L~-~L~~~Glv~~~ 76 (96)
T 1y0u_A 42 KGRSEEEIMQTLSLS-KKQLDYHLK-VLEAGFCIERV 76 (96)
T ss_dssp TTCCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEE
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEE
Confidence 558999999999997 777877766 77888999864
No 107
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=31.58 E-value=37 Score=20.04 Aligned_cols=22 Identities=9% Similarity=0.227 Sum_probs=19.0
Q ss_pred cChHHHHHHcCCCChHHHHHHHH
Q 024854 110 LPYDELMEELDVTNVRELEDFLI 132 (261)
Q Consensus 110 Isy~~I~~~L~I~~~~evE~lvI 132 (261)
+++.+|++.|+|+ ...|..|+=
T Consensus 22 ~s~~~IA~~lgis-~~Tv~~~~~ 43 (51)
T 1tc3_C 22 VSLHEMSRKISRS-RHCIRVYLK 43 (51)
T ss_dssp CCHHHHHHHHTCC-HHHHHHHHH
T ss_pred CCHHHHHHHHCcC-HHHHHHHHh
Confidence 6899999999997 888887764
No 108
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=31.55 E-value=65 Score=24.26 Aligned_cols=49 Identities=14% Similarity=0.130 Sum_probs=31.8
Q ss_pred cccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCceEEEecCCCCEEE
Q 024854 103 LAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFE 153 (261)
Q Consensus 103 La~~~k~Isy~~I~~~L~I~~~~evE~lvI~eAI~~gLI~GkIDQ~~~~v~ 153 (261)
|......++..+|++.++++ ...+=..|= .....|+|.-.-|..++...
T Consensus 48 l~~~~~~~t~~eLa~~l~i~-~~tvs~~l~-~Le~~Glv~r~~~~~D~R~~ 96 (150)
T 3fm5_A 48 ACEQAEGVNQRGVAATMGLD-PSQIVGLVD-ELEERGLVVRTLDPSDRRNK 96 (150)
T ss_dssp HHHSTTCCCSHHHHHHHTCC-HHHHHHHHH-HHHTTTSEEC----------
T ss_pred HHhCCCCcCHHHHHHHHCCC-HhHHHHHHH-HHHHCCCEEeeCCccccchh
Confidence 33445569999999999997 777877766 88889999988877665544
No 109
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=31.19 E-value=51 Score=22.19 Aligned_cols=28 Identities=11% Similarity=0.146 Sum_probs=23.1
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhH
Q 024854 107 NKVLPYDELMEELDVTNVRELEDFLINECM 136 (261)
Q Consensus 107 ~k~Isy~~I~~~L~I~~~~evE~lvI~eAI 136 (261)
+...||.+|++.++++ ...|...+- .|+
T Consensus 28 ~~~~s~~eIA~~l~is-~~tV~~~~~-ra~ 55 (73)
T 1ku3_A 28 GREHTLEEVGAYFGVT-RERIRQIEN-KAL 55 (73)
T ss_dssp SSCCCHHHHHHHHTCC-HHHHHHHHH-HHH
T ss_pred CCCCCHHHHHHHHCCC-HHHHHHHHH-HHH
Confidence 3568999999999997 888888766 554
No 110
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=30.59 E-value=1.7e+02 Score=21.86 Aligned_cols=44 Identities=11% Similarity=0.066 Sum_probs=31.9
Q ss_pred CCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCceEEEecCCCCE
Q 024854 106 TNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (261)
Q Consensus 106 ~~k~Isy~~I~~~L~I~~~~evE~lvI~eAI~~gLI~GkIDQ~~~~ 151 (261)
....++..+|++.++++ ...|=..|= .....|+|.-.-|..++.
T Consensus 54 ~~~~~t~~ela~~l~i~-~~tvs~~l~-~Le~~Glv~r~~~~~d~R 97 (155)
T 3cdh_A 54 DNDAMMITRLAKLSLME-QSRMTRIVD-QMDARGLVTRVADAKDKR 97 (155)
T ss_dssp SCSCBCHHHHHHHTTCC-HHHHHHHHH-HHHHTTSEEECC------
T ss_pred HCCCcCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEeccCCCcCC
Confidence 34579999999999997 778887766 888899999776654433
No 111
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=30.51 E-value=1.1e+02 Score=23.69 Aligned_cols=43 Identities=9% Similarity=-0.032 Sum_probs=35.0
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCceEEEecCCCCEE
Q 024854 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCF 152 (261)
Q Consensus 108 k~Isy~~I~~~L~I~~~~evE~lvI~eAI~~gLI~GkIDQ~~~~v 152 (261)
..++..+|++.++++ ...|=..|= .....|+|.-.-|..++..
T Consensus 58 ~~~t~~eLa~~l~is-~~tvs~~l~-~Le~~GlV~r~~~~~DrR~ 100 (168)
T 2nyx_A 58 GPINLATLATLLGVQ-PSATGRMVD-RLVGAELIDRLPHPTSRRE 100 (168)
T ss_dssp CSEEHHHHHHHHTSC-HHHHHHHHH-HHHHTTSEEEEECSSCSSC
T ss_pred CCCCHHHHHHHhCCC-HHHHHHHHH-HHHHCCCEEeccCCCCCCe
Confidence 469999999999997 777777665 8888999999888765543
No 112
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=29.93 E-value=84 Score=23.29 Aligned_cols=38 Identities=18% Similarity=0.141 Sum_probs=30.9
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCceEEEecC
Q 024854 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQ 147 (261)
Q Consensus 108 k~Isy~~I~~~L~I~~~~evE~lvI~eAI~~gLI~GkIDQ 147 (261)
+..++.+|++.++++ ...|-..+= .....|+|..+-+.
T Consensus 33 ~~~~~~eLa~~lgis-~stvs~~L~-~L~~~GlV~~~~~g 70 (118)
T 2jsc_A 33 GVCYPGQLAAHLGLT-RSNVSNHLS-CLRGCGLVVATYEG 70 (118)
T ss_dssp TCCSTTTHHHHHSSC-HHHHHHHHH-HHTTTTSEEEEECS
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCceEEEEEC
Confidence 357899999999997 778887776 77889999877553
No 113
>2k6x_A Sigma-A, RNA polymerase sigma factor RPOD; DNA-binding, transcription, transcription regulation; NMR {Thermotoga maritima}
Probab=29.89 E-value=32 Score=23.98 Aligned_cols=40 Identities=15% Similarity=0.297 Sum_probs=27.5
Q ss_pred hhhcccCCcccChHHHHHHcCC----CChHHHHHHHHHHhHhcCc
Q 024854 100 VLTLAETNKVLPYDELMEELDV----TNVRELEDFLINECMYTGI 140 (261)
Q Consensus 100 llsLa~~~k~Isy~~I~~~L~I----~~~~evE~lvI~eAI~~gL 140 (261)
|+..+...+.|+|++|.+.|.- -+.+++|+++- ..-..||
T Consensus 14 Li~~gK~~G~lTy~EI~d~l~~~~~~ld~e~id~i~~-~L~~~gI 57 (72)
T 2k6x_A 14 LISLGKKKGYITYEDIDKAFPPDFEGFDTNLIERIHE-ELEKHGI 57 (72)
T ss_dssp HHHHHHHHSSCBHHHHHHHCSCSCSSCCHHHHHHHHH-HHHHTCC
T ss_pred HHHHHhHcCCccHHHHHHhCccccccCCHHHHHHHHH-HHHHCCC
Confidence 5556666678999999999852 24788888765 4444443
No 114
>3t5v_A Nuclear mRNA export protein SAC3; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=29.52 E-value=64 Score=29.03 Aligned_cols=61 Identities=18% Similarity=0.275 Sum_probs=42.8
Q ss_pred CChhhHhhhhCC--CCCcc----hHHHHHHHHHHhhhccc----CCcccChHHHHHHcCCCChHHHHHHHH
Q 024854 72 GTWSDYKNNAGH--LPQLV----PDQVLKLKQLTVLTLAE----TNKVLPYDELMEELDVTNVRELEDFLI 132 (261)
Q Consensus 72 Gt~~dy~~~~~~--l~~L~----~~~~~KLr~LTllsLa~----~~k~Isy~~I~~~L~I~~~~evE~lvI 132 (261)
|+|.-|-..-.. .|-|. +-....+|..++-+++. ..+.+|.+.|++.|+.++.+++++|+-
T Consensus 177 gNY~rFFrL~~~~~~pyL~aclle~~~~~vR~~AL~~i~kay~~k~~~~pl~~L~~~L~Fds~ee~~~F~~ 247 (316)
T 3t5v_A 177 NFYARFFQLMQSPSLPLLMGFFLQMHLTDIRFYALRALSHTLNKKHKPIPFIYLENMLLFNNRQEIIEFCN 247 (316)
T ss_dssp CCHHHHHHHHTCTTSCHHHHHHHGGGHHHHHHHHHHHHHHHSCTTCCCEEHHHHHHHTTCSSHHHHHHHHH
T ss_pred chHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCHHHHHHHhCCCCHHHHHHHHH
Confidence 666666553322 34333 22367888877776664 346899999999999998999999876
No 115
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=29.12 E-value=43 Score=24.33 Aligned_cols=37 Identities=16% Similarity=0.242 Sum_probs=30.7
Q ss_pred CCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCceEEE
Q 024854 106 TNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK 144 (261)
Q Consensus 106 ~~k~Isy~~I~~~L~I~~~~evE~lvI~eAI~~gLI~Gk 144 (261)
.+..++-.+|++.++++ ...|=..+- .....|+|...
T Consensus 30 ~g~~~s~~eLa~~lgvs-~~tV~~~L~-~L~~~GlV~~~ 66 (110)
T 1q1h_A 30 KGTEMTDEEIANQLNIK-VNDVRKKLN-LLEEQGFVSYR 66 (110)
T ss_dssp HCSCBCHHHHHHTTTSC-HHHHHHHHH-HHHHHTSCEEE
T ss_pred cCCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEE
Confidence 44458999999999997 778888777 78889999865
No 116
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=28.81 E-value=1.9e+02 Score=22.00 Aligned_cols=49 Identities=8% Similarity=-0.015 Sum_probs=36.2
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCceEEEecCCCCEEEEEee
Q 024854 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFA 157 (261)
Q Consensus 107 ~k~Isy~~I~~~L~I~~~~evE~lvI~eAI~~gLI~GkIDQ~~~~v~V~~~ 157 (261)
+..++..+|++.++++ ...|=.+|= .....|+|.-.-|..++....-+.
T Consensus 60 ~~~~t~~eLa~~l~~~-~~tvs~~l~-~Le~~Glv~r~~~~~DrR~~~l~L 108 (168)
T 3u2r_A 60 PEGMATLQIADRLISR-APDITRLID-RLDDRGLVLRTRKPENRRVVEVAL 108 (168)
T ss_dssp TSCEEHHHHHHHC----CTHHHHHHH-HHHHTTSEEEEEETTEEEEEEEEE
T ss_pred CCCcCHHHHHHHHCCC-hhhHHHHHH-HHHHCCCEeecCCCCCCCeeEeEE
Confidence 4689999999999997 667776665 788899999999887776554443
No 117
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=28.39 E-value=64 Score=23.11 Aligned_cols=27 Identities=4% Similarity=0.266 Sum_probs=22.0
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhH
Q 024854 108 KVLPYDELMEELDVTNVRELEDFLINECM 136 (261)
Q Consensus 108 k~Isy~~I~~~L~I~~~~evE~lvI~eAI 136 (261)
.-.+|.+|++.|+++ ...|...+- .+.
T Consensus 41 ~g~s~~eIA~~l~is-~~tV~~~l~-r~~ 67 (95)
T 3c57_A 41 EGLTNKQIADRMFLA-EKTVKNYVS-RLL 67 (95)
T ss_dssp TTCCHHHHHHHHTCC-HHHHHHHHH-HHH
T ss_pred cCCCHHHHHHHHCcC-HHHHHHHHH-HHH
Confidence 347999999999997 989988766 544
No 118
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=28.05 E-value=1.6e+02 Score=21.68 Aligned_cols=44 Identities=18% Similarity=0.052 Sum_probs=35.4
Q ss_pred ChHHHHHHcCCCChHHHHHHHHHHhHhcCceEEEecCCCCEEEEEe
Q 024854 111 PYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQF 156 (261)
Q Consensus 111 sy~~I~~~L~I~~~~evE~lvI~eAI~~gLI~GkIDQ~~~~v~V~~ 156 (261)
+..+|++.++++ ...+=..|= .....|+|.-.-|..++....-.
T Consensus 52 ~~~~la~~l~~~-~~tvs~~l~-~Le~~Glv~r~~~~~D~R~~~~~ 95 (144)
T 3f3x_A 52 SMVYLANRYFVT-QSAITAAVD-KLEAKGLVRRIRDSKDRRIVIVE 95 (144)
T ss_dssp EHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEEETTEEEEEEEE
T ss_pred CHHHHHHHHCCC-hhHHHHHHH-HHHHCCCEEeccCCCCCceEEEE
Confidence 999999999997 777776665 88889999999888766544433
No 119
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=28.02 E-value=44 Score=25.00 Aligned_cols=44 Identities=11% Similarity=-0.012 Sum_probs=26.7
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCceEEEecCCCCEEE
Q 024854 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFE 153 (261)
Q Consensus 108 k~Isy~~I~~~L~I~~~~evE~lvI~eAI~~gLI~GkIDQ~~~~v~ 153 (261)
..++..+|++.++++ ...|=..|= .....|+|.-.-|..++...
T Consensus 50 ~~~t~~eLa~~l~~~-~~tvs~~l~-~L~~~Glv~r~~~~~DrR~~ 93 (142)
T 3ech_A 50 RGLNLQDLGRQMCRD-KALITRKIR-ELEGRNLVRRERNPSDQRSF 93 (142)
T ss_dssp TTCCHHHHHHHHC----CHHHHHHH-HHHHTTSEEC----------
T ss_pred CCcCHHHHHHHhCCC-HHHHHHHHH-HHHHCCCEeeccCCCCCCee
Confidence 469999999999997 777777666 88889999988887665543
No 120
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=27.88 E-value=61 Score=22.73 Aligned_cols=29 Identities=14% Similarity=0.257 Sum_probs=24.4
Q ss_pred CCcccChHHHHHHcCCCChHHHHHHHHHHhH
Q 024854 106 TNKVLPYDELMEELDVTNVRELEDFLINECM 136 (261)
Q Consensus 106 ~~k~Isy~~I~~~L~I~~~~evE~lvI~eAI 136 (261)
.+...||.+|++.++++ ...|...+- .|+
T Consensus 35 ~~~~~s~~EIA~~lgis-~~tV~~~~~-ra~ 63 (87)
T 1tty_A 35 DGKPKTLEEVGQYFNVT-RERIRQIEV-KAL 63 (87)
T ss_dssp TSSCCCHHHHHHHHTCC-HHHHHHHHH-HHH
T ss_pred CCCCCCHHHHHHHHCCC-HHHHHHHHH-HHH
Confidence 34679999999999998 888988877 775
No 121
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=27.86 E-value=50 Score=23.33 Aligned_cols=27 Identities=7% Similarity=0.121 Sum_probs=22.4
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhH
Q 024854 108 KVLPYDELMEELDVTNVRELEDFLINECM 136 (261)
Q Consensus 108 k~Isy~~I~~~L~I~~~~evE~lvI~eAI 136 (261)
.-.+|.+|++.|+++ ...|...+- .|+
T Consensus 52 ~g~s~~eIA~~lgis-~~tV~~~l~-ra~ 78 (92)
T 3hug_A 52 RGWSTAQIATDLGIA-EGTVKSRLH-YAV 78 (92)
T ss_dssp SCCCHHHHHHHHTSC-HHHHHHHHH-HHH
T ss_pred cCCCHHHHHHHHCcC-HHHHHHHHH-HHH
Confidence 347999999999997 888888776 664
No 122
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=27.78 E-value=36 Score=26.20 Aligned_cols=42 Identities=7% Similarity=-0.014 Sum_probs=32.3
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCceEEEecCCCCE
Q 024854 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (261)
Q Consensus 108 k~Isy~~I~~~L~I~~~~evE~lvI~eAI~~gLI~GkIDQ~~~~ 151 (261)
..++..+|++.++++ ...|=..|= .....|+|.-.-|..++.
T Consensus 66 ~~~t~~eLa~~l~~~-~~~vs~~l~-~Le~~Glv~r~~~~~DrR 107 (161)
T 3e6m_A 66 GELTVGQLATLGVME-QSTTSRTVD-QLVDEGLAARSISDADQR 107 (161)
T ss_dssp SEEEHHHHHHHTTCC-HHHHHHHHH-HHHHTTSEEECC---CCC
T ss_pred CCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEeeCCcccCC
Confidence 479999999999997 777777666 888899999887765543
No 123
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=26.82 E-value=69 Score=27.43 Aligned_cols=45 Identities=18% Similarity=0.122 Sum_probs=37.0
Q ss_pred CCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCceEEEecCCCCEEEEE
Q 024854 106 TNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQ 155 (261)
Q Consensus 106 ~~k~Isy~~I~~~L~I~~~~evE~lvI~eAI~~gLI~GkIDQ~~~~v~V~ 155 (261)
.+.+.+..+|++.++++ ..+|+.-+- +....|+|+ -..+++|.+.
T Consensus 175 ~~~~~t~~~la~~~~l~-~~~V~~~l~-~L~~~~~v~---~~~~~~~~~~ 219 (232)
T 2qlz_A 175 LNGRATVEELSDRLNLK-EREVREKIS-EMARFVPVK---IINDNTVVLD 219 (232)
T ss_dssp HSSEEEHHHHHHHHTCC-HHHHHHHHH-HHTTTSCEE---EETTTEEEEC
T ss_pred hcCCCCHHHHHHHhCcC-HHHHHHHHH-HHHhcCCeE---EecCCeEEec
Confidence 36889999999999998 999998888 999999998 3345566554
No 124
>4g9j_C Synthetic peptide, serine/threonine-protein phosphatase PP1-alpha Ca subunit; activating peptide; 3.10A {Homo sapiens}
Probab=26.67 E-value=18 Score=20.39 Aligned_cols=9 Identities=67% Similarity=1.051 Sum_probs=6.5
Q ss_pred cCCCccccc
Q 024854 248 RGRPKRCRR 256 (261)
Q Consensus 248 ~~~~~~~~~ 256 (261)
|++|||+|.
T Consensus 2 rkrpkrkrk 10 (26)
T 4g9j_C 2 RKRPKRKRK 10 (26)
T ss_pred Ccccccccc
Confidence 678888664
No 125
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=26.65 E-value=1.3e+02 Score=21.07 Aligned_cols=48 Identities=4% Similarity=-0.004 Sum_probs=33.3
Q ss_pred CCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCceEEEecCCCCEEEEE
Q 024854 106 TNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQ 155 (261)
Q Consensus 106 ~~k~Isy~~I~~~L~I~~~~evE~lvI~eAI~~gLI~GkIDQ~~~~v~V~ 155 (261)
.+..++..+|++.++++ ...|=.+|= .....|+|.-.-|.....+.++
T Consensus 27 ~~~~~t~~eLa~~l~i~-~~tvs~~l~-~Le~~Glv~~~~d~R~~~v~LT 74 (95)
T 2qvo_A 27 GGNDVYIQYIASKVNSP-HSYVWLIIK-KFEEAKMVECELEGRTKIIRLT 74 (95)
T ss_dssp TTCCEEHHHHHHHSSSC-HHHHHHHHH-HHHHTTSEEEEEETTEEEEEEC
T ss_pred CCCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCcCccCCCCCCeEEEEEC
Confidence 34459999999999997 777777665 7888999944334333334433
No 126
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=25.99 E-value=61 Score=23.96 Aligned_cols=28 Identities=18% Similarity=0.311 Sum_probs=24.1
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhH
Q 024854 107 NKVLPYDELMEELDVTNVRELEDFLINECM 136 (261)
Q Consensus 107 ~k~Isy~~I~~~L~I~~~~evE~lvI~eAI 136 (261)
....||.+|++.++++ ...|...+- .|+
T Consensus 37 ~e~~s~~EIA~~lgiS-~~tVr~~~~-rAl 64 (99)
T 3t72_q 37 NTDYTLEEVGKQFDVT-RERIRQIEA-KAL 64 (99)
T ss_pred CCCCCHHHHHHHHCcC-HHHHHHHHH-HHH
Confidence 4679999999999997 888888877 775
No 127
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=24.91 E-value=1.7e+02 Score=21.88 Aligned_cols=37 Identities=14% Similarity=0.090 Sum_probs=30.3
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCceEEEec
Q 024854 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLD 146 (261)
Q Consensus 108 k~Isy~~I~~~L~I~~~~evE~lvI~eAI~~gLI~GkID 146 (261)
+..++.+|++.|+++ ...|-..|= .....|+|...-+
T Consensus 58 ~~~s~~ela~~lgis-~stvs~~L~-~Le~~Glv~~~~~ 94 (122)
T 1r1t_A 58 SELCVGDLAQAIGVS-ESAVSHQLR-SLRNLRLVSYRKQ 94 (122)
T ss_dssp CCBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEEE
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeEEEEe
Confidence 568999999999997 777777666 6777899987654
No 128
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=24.86 E-value=1e+02 Score=24.03 Aligned_cols=37 Identities=14% Similarity=0.267 Sum_probs=26.0
Q ss_pred HHhhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcC
Q 024854 98 LTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTG 139 (261)
Q Consensus 98 LTllsLa~~~k~Isy~~I~~~L~I~~~~evE~lvI~eAI~~g 139 (261)
+-|+.+...+ .||.+|+++++++ ...|.. +- +++..|
T Consensus 66 ~eV~klL~~G--~syreIA~~~g~S-~aTIsR-v~-r~L~~g 102 (119)
T 3kor_A 66 LQVAKMIKQG--YTYATIEQESGAS-TATISR-VK-RSLQWG 102 (119)
T ss_dssp HHHHHHHHHT--CCHHHHHHHHCCC-HHHHHH-HH-HHHHSS
T ss_pred HHHHHHHHcC--CCHHHHHHHHCCC-HHHHHH-HH-HHHhcC
Confidence 4444444333 9999999999997 888876 44 566544
No 129
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=24.41 E-value=1e+02 Score=23.05 Aligned_cols=43 Identities=12% Similarity=0.094 Sum_probs=32.3
Q ss_pred hhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCceEEE
Q 024854 100 VLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK 144 (261)
Q Consensus 100 llsLa~~~k~Isy~~I~~~L~I~~~~evE~lvI~eAI~~gLI~Gk 144 (261)
|+.+...+..++..+|++.++++ ...|=..|= .....|+|.-.
T Consensus 13 i~~l~~~~~~~~~~ela~~l~vs-~~tvs~~l~-~Le~~Glv~r~ 55 (142)
T 1on2_A 13 IYMLIEEKGYARVSDIAEALAVH-PSSVTKMVQ-KLDKDEYLIYE 55 (142)
T ss_dssp HHHHHHHHSSCCHHHHHHHHTSC-HHHHHHHHH-HHHHTTSEEEE
T ss_pred HHHHHhhcCCCCHHHHHHHhCCC-HHHHHHHHH-HHHHCCCEEEe
Confidence 33343444569999999999997 777777666 77888999765
No 130
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=24.02 E-value=1e+02 Score=18.01 Aligned_cols=23 Identities=17% Similarity=0.303 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 024854 168 GSMIQTLSNWLTTSDNLLISIQE 190 (261)
Q Consensus 168 ~~L~~~L~~W~~~~~~~l~~ie~ 190 (261)
+.+..-|.+-+.++++++..++.
T Consensus 2 Q~IkkELtQIK~kvDsLLe~Le~ 24 (28)
T 1txp_A 2 QAIKKELTQIKQKVDSLLENLEK 24 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677788888888888888764
No 131
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=23.57 E-value=1.1e+02 Score=26.30 Aligned_cols=45 Identities=27% Similarity=0.223 Sum_probs=35.4
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCceEEEecCCCCEEEEE
Q 024854 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQ 155 (261)
Q Consensus 107 ~k~Isy~~I~~~L~I~~~~evE~lvI~eAI~~gLI~GkIDQ~~~~v~V~ 155 (261)
+..++..+|++.++++ ...+-..|= .....|+|... ...+.+.++
T Consensus 164 ~~~~s~~eLA~~lgls-ksTv~r~L~-~Le~~GlV~r~--~r~~~~~LT 208 (244)
T 2wte_A 164 TKGTGITELAKMLDKS-EKTLINKIA-ELKKFGILTQK--GKDRKVELN 208 (244)
T ss_dssp HTCBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEE--TTTTEEEEC
T ss_pred cCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEe--CCccEEEEC
Confidence 3469999999999998 888888877 88889999886 444555544
No 132
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=23.46 E-value=1e+02 Score=22.71 Aligned_cols=43 Identities=7% Similarity=0.178 Sum_probs=34.0
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCceEEEecCCCCE
Q 024854 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (261)
Q Consensus 107 ~k~Isy~~I~~~L~I~~~~evE~lvI~eAI~~gLI~GkIDQ~~~~ 151 (261)
+..++..+|++.++++ ...|=..|= .....|+|.-.-|..++.
T Consensus 49 ~~~~~~~ela~~l~~~-~~tvs~~l~-~L~~~gli~r~~~~~d~R 91 (142)
T 2bv6_A 49 ESPVNVKKVVTELALD-TGTVSPLLK-RMEQVDLIKRERSEVDQR 91 (142)
T ss_dssp SSEEEHHHHHHHTTCC-TTTHHHHHH-HHHHTTSEEEEECSSSTT
T ss_pred cCCcCHHHHHHHHCCC-hhhHHHHHH-HHHHCCCEEeecCCCCcc
Confidence 3469999999999997 767777666 788899999887765443
No 133
>1eij_A Hypothetical protein MTH1615; beta-helix, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: a.5.6.1
Probab=22.90 E-value=33 Score=24.98 Aligned_cols=22 Identities=32% Similarity=0.406 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhHhcCceEEEecC
Q 024854 125 RELEDFLINECMYTGIVRGKLDQ 147 (261)
Q Consensus 125 ~evE~lvI~eAI~~gLI~GkIDQ 147 (261)
+.||+.|| .....|-|.|+||.
T Consensus 37 ~~VE~~Li-~lAq~Gqi~~ki~e 58 (80)
T 1eij_A 37 EQIELQLI-QLAQMGRVRSKITD 58 (80)
T ss_dssp HHHHHHHH-HHHHCCSSCCCCCH
T ss_pred HHHHHHHH-HHHHcCCCCCCcCH
Confidence 68999999 89999999998875
No 134
>2l16_A SEC-independent protein translocase protein tatad; membrane protein, protein transport; NMR {Bacillus subtilis}
Probab=22.88 E-value=59 Score=23.38 Aligned_cols=31 Identities=13% Similarity=0.052 Sum_probs=26.1
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024854 161 DLRPGQLGSMIQTLSNWLTTSDNLLISIQEK 191 (261)
Q Consensus 161 dl~~~q~~~L~~~L~~W~~~~~~~l~~ie~~ 191 (261)
.|+|+.++.+...+..|...........++.
T Consensus 20 vfGpkkLP~l~r~lGk~ir~fK~~~~~~~~e 50 (78)
T 2l16_A 20 IFGPSKLPEIGRAAGRTLLEFKSATKSLVSG 50 (78)
T ss_dssp HSCTTTHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred eeCccHhHHHHHHHHHHHHHHHHHHHHhHhh
Confidence 4789999999999999999888877766644
No 135
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=22.16 E-value=1.6e+02 Score=18.82 Aligned_cols=26 Identities=12% Similarity=0.120 Sum_probs=21.4
Q ss_pred ccChHHHHHHcCCCChHHHHHHHHHHhH
Q 024854 109 VLPYDELMEELDVTNVRELEDFLINECM 136 (261)
Q Consensus 109 ~Isy~~I~~~L~I~~~~evE~lvI~eAI 136 (261)
-.||.+|++.++++ ...|...+= .|.
T Consensus 31 g~s~~eIA~~lgis-~~tv~~~~~-ra~ 56 (70)
T 2o8x_A 31 GLSYADAAAVCGCP-VGTIRSRVA-RAR 56 (70)
T ss_dssp CCCHHHHHHHHTSC-HHHHHHHHH-HHH
T ss_pred CCCHHHHHHHHCcC-HHHHHHHHH-HHH
Confidence 37999999999997 888887766 554
No 136
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=22.06 E-value=1.2e+02 Score=20.95 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=21.0
Q ss_pred ccChHHHHHHcCCCChHHHHHHHHHHhH
Q 024854 109 VLPYDELMEELDVTNVRELEDFLINECM 136 (261)
Q Consensus 109 ~Isy~~I~~~L~I~~~~evE~lvI~eAI 136 (261)
-.+|.+|++.|+++ ...|...+- .+.
T Consensus 36 g~s~~eIA~~l~is-~~tV~~~l~-r~~ 61 (82)
T 1je8_A 36 GLPNKMIARRLDIT-ESTVKVHVK-HML 61 (82)
T ss_dssp TCCHHHHHHHHTSC-HHHHHHHHH-HHH
T ss_pred CCCHHHHHHHHCcC-HHHHHHHHH-HHH
Confidence 37999999999997 888887665 443
No 137
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=21.95 E-value=2.3e+02 Score=20.38 Aligned_cols=59 Identities=7% Similarity=0.051 Sum_probs=39.2
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------hHHHHHHHHHHHHHHHHHHHhc
Q 024854 162 LRPGQLGSMIQTLSNWLTTSDNLLISIQEKIKWADSM-------NEMDKKHRKDLEEKVEEAKKSL 220 (261)
Q Consensus 162 l~~~q~~~L~~~L~~W~~~~~~~l~~ie~~i~~a~~~-------~~~~~~~~~~~~~~~~~~kk~~ 220 (261)
++++++......+......++..|..|+..+...-.. ++.-...+.++...+.++...|
T Consensus 11 v~~~~l~~~a~~~~~~~~~i~~~l~~L~~~v~~L~~~g~W~G~A~~ay~~~~~~W~~~a~~l~~~L 76 (103)
T 4i0x_B 11 FDLDHIEQVTSRARGFKEFVTENLDQLESRAQKLVQSGQWAGAAAAAYSQAHKEWMDAARELVEGL 76 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeechHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888888888888888888877755443 3344455555555555555444
No 138
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=21.81 E-value=1e+02 Score=22.01 Aligned_cols=40 Identities=28% Similarity=0.393 Sum_probs=26.0
Q ss_pred CCCcchHHHHHHHHHHhhhcccCCcccChHHHHHHcCCCChHHHHHHHH
Q 024854 84 LPQLVPDQVLKLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLI 132 (261)
Q Consensus 84 l~~L~~~~~~KLr~LTllsLa~~~k~Isy~~I~~~L~I~~~~evE~lvI 132 (261)
.+.|++.+..=+++ .. .-.++.+|++.|+|+ ...|+..+-
T Consensus 27 ~~~Lt~rE~~Vl~l------~~--~G~s~~eIA~~L~iS-~~TV~~~~~ 66 (90)
T 3ulq_B 27 QDVLTPRECLILQE------VE--KGFTNQEIADALHLS-KRSIEYSLT 66 (90)
T ss_dssp --CCCHHHHHHHHH------HH--TTCCHHHHHHHHTCC-HHHHHHHHH
T ss_pred ccCCCHHHHHHHHH------HH--cCCCHHHHHHHHCcC-HHHHHHHHH
Confidence 44577654433322 22 336999999999997 888887765
No 139
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=21.38 E-value=1.8e+02 Score=22.96 Aligned_cols=64 Identities=8% Similarity=0.096 Sum_probs=45.8
Q ss_pred CcchHHHHHHHHHHhhhccc-CCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCceEEEecCCCCEEEEEe
Q 024854 86 QLVPDQVLKLKQLTVLTLAE-TNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQF 156 (261)
Q Consensus 86 ~L~~~~~~KLr~LTllsLa~-~~k~Isy~~I~~~L~I~~~~evE~lvI~eAI~~gLI~GkIDQ~~~~v~V~~ 156 (261)
.|++.+..-| ..|.. ....++..+|++.++++ ...+=..|= .....|+|.-.-|..++....-+
T Consensus 38 ~lt~~q~~vL-----~~L~~~~~~~~t~~eLa~~l~is-~~tvs~~l~-~Le~~GlV~r~~~~~DrR~~~l~ 102 (189)
T 3nqo_A 38 ILTSRQYMTI-----LSILHLPEEETTLNNIARKMGTS-KQNINRLVA-NLEKNGYVDVIPSPHDKRAINVK 102 (189)
T ss_dssp SSCHHHHHHH-----HHHHHSCGGGCCHHHHHHHHTSC-HHHHHHHHH-HHHHTTSEEEEECSSCSSCEEEE
T ss_pred cCCHHHHHHH-----HHHHhccCCCcCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEeccCCCCCCeeEEE
Confidence 3776544432 23333 35689999999999997 777877766 88889999999988766544433
No 140
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=21.19 E-value=66 Score=24.86 Aligned_cols=27 Identities=15% Similarity=0.286 Sum_probs=23.2
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhH
Q 024854 108 KVLPYDELMEELDVTNVRELEDFLINECM 136 (261)
Q Consensus 108 k~Isy~~I~~~L~I~~~~evE~lvI~eAI 136 (261)
..+||.+|++.||++ ...|...+- .|.
T Consensus 108 ~g~s~~EIA~~lgis-~~tV~~~l~-rar 134 (157)
T 2lfw_A 108 EGFSPEDAAYLIEVD-TSEVETLVT-EAL 134 (157)
T ss_dssp SCCCHHHHHHTTTSC-HHHHHHHHH-HHH
T ss_pred cCCCHHHHHHHHCcC-HHHHHHHHH-HHH
Confidence 458999999999998 999998877 664
No 141
>2fh0_A Hypothetical 16.0 kDa protein in ABF2-CHL12 intergenic region; ensemble, YMR074CP, unknown function; NMR {Saccharomyces cerevisiae}
Probab=21.16 E-value=35 Score=24.91 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHhHhcCceEEEecC
Q 024854 124 VRELEDFLINECMYTGIVRGKLDQ 147 (261)
Q Consensus 124 ~~evE~lvI~eAI~~gLI~GkIDQ 147 (261)
.+.||+.|| .....|-|.|+|+.
T Consensus 34 A~~VE~~Li-~lAq~Gqi~~ki~e 56 (81)
T 2fh0_A 34 AQAVETYLK-KLIATNNVTHKITE 56 (81)
T ss_dssp HHHHHHHHH-HHHHHTCCSCCBCH
T ss_pred HHHHHHHHH-HHHHcCCCCCCcCH
Confidence 368999999 88999999998875
No 142
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=20.99 E-value=89 Score=23.18 Aligned_cols=45 Identities=7% Similarity=-0.007 Sum_probs=35.3
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCceEEEecCCCCEEE
Q 024854 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFE 153 (261)
Q Consensus 107 ~k~Isy~~I~~~L~I~~~~evE~lvI~eAI~~gLI~GkIDQ~~~~v~ 153 (261)
...++..+|++.++++ ...|=..|= .....|+|.=.-|..++...
T Consensus 51 ~~~~t~~eLa~~l~~~-~~tvs~~l~-~Le~~Glv~r~~~~~D~R~~ 95 (127)
T 2frh_A 51 EKEYYLKDIINHLNYK-QPQVVKAVK-ILSQEDYFDKKRNEHDERTV 95 (127)
T ss_dssp CSEEEHHHHHHHSSSH-HHHHHHHHH-HHHHTTSSCCBCCSSSSCCC
T ss_pred CCCcCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEecCCCCCCCee
Confidence 3679999999999997 667776665 78889999987777655443
No 143
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=20.72 E-value=1e+02 Score=23.01 Aligned_cols=42 Identities=14% Similarity=0.016 Sum_probs=32.9
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCceEE--EecCCCCE
Q 024854 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRG--KLDQLRRC 151 (261)
Q Consensus 108 k~Isy~~I~~~L~I~~~~evE~lvI~eAI~~gLI~G--kIDQ~~~~ 151 (261)
..++..+|++.++++ ...|-..|= .....|+|.- .-|..++.
T Consensus 54 ~~~t~~eLa~~l~~~-~~tvs~~l~-~Le~~Glv~r~~~~~~~d~R 97 (154)
T 2qww_A 54 PGISVADLTKRLIIT-GSSAAANVD-GLISLGLVVKLNKTIPNDSM 97 (154)
T ss_dssp TTEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEESCC--CTTCT
T ss_pred CCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEecCcCCCCCCc
Confidence 569999999999997 778887766 8889999998 66655443
No 144
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=20.70 E-value=86 Score=19.88 Aligned_cols=23 Identities=13% Similarity=0.313 Sum_probs=17.6
Q ss_pred ccChHHHHHHcCCCChHHHHHHHH
Q 024854 109 VLPYDELMEELDVTNVRELEDFLI 132 (261)
Q Consensus 109 ~Isy~~I~~~L~I~~~~evE~lvI 132 (261)
-.++.+|++.|+++ ...|...+=
T Consensus 13 g~s~~eIA~~l~is-~~tV~~~~~ 35 (61)
T 2jpc_A 13 GYTNHGISEKLHIS-IKTVETHRM 35 (61)
T ss_dssp SCCSHHHHHHTCSC-HHHHHHHHH
T ss_pred CCCHHHHHHHhCCC-HHHHHHHHH
Confidence 35889999999997 777765544
No 145
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=20.63 E-value=1.4e+02 Score=26.03 Aligned_cols=51 Identities=12% Similarity=0.165 Sum_probs=38.5
Q ss_pred HHHHHhhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCceEEEecC
Q 024854 95 LKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQ 147 (261)
Q Consensus 95 Lr~LTllsLa~~~k~Isy~~I~~~L~I~~~~evE~lvI~eAI~~gLI~GkIDQ 147 (261)
.+++..+........++-.+|++.|+|+ ..-|=..+- .+-..|+|+-++..
T Consensus 7 ~~~~~~ia~l~~~~~~~~~ela~~l~vS-~~tIrRdL~-~l~~~G~v~iri~g 57 (315)
T 2w48_A 7 IRLIVKIAQLYYEQDMTQAQIARELGIY-RTTISRLLK-RGREQGIVTIAINY 57 (315)
T ss_dssp HHHHHHHHHHHHTSCCCHHHHHHHTTCC-HHHHHHHHH-HHHHTTSEEEEECS
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCcEEEEecC
Confidence 4444444443445569999999999997 888888888 89999999866654
Done!