BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024855
(261 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8GUH1|PUB33_ARATH U-box domain-containing protein 33 OS=Arabidopsis thaliana GN=PUB33
PE=2 SV=2
Length = 834
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 3/122 (2%)
Query: 110 EDIIYVAVGKS-QSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPE 168
++ I+VAV K S L W L++ I LIHV + +P K P V E
Sbjct: 44 DEKIFVAVDKHVAKSKSTLIWALQNTGGKK--ICLIHVHQPSQMIPLMGAKFPVGAVKEE 101
Query: 169 QLETFMAQETGKRRQLLQKFLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVG 228
++ F +E K +L +L C Q V + + IE + + I+ LI L IRKLV+G
Sbjct: 102 EVRVFREKEREKVHMILDDYLRICQQRGVRAEKMFIEMESIENGIVQLISELGIRKLVMG 161
Query: 229 TT 230
Sbjct: 162 AA 163
>sp|Q9SW11|PUB35_ARATH U-box domain-containing protein 35 OS=Arabidopsis thaliana GN=PUB35
PE=1 SV=2
Length = 835
Score = 51.2 bits (121), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 65/124 (52%), Gaps = 2/124 (1%)
Query: 113 IYVAVGKSQSSMDALSWTLRHAVNPSTLIF-LIHVFPQVKFVPSPLGK-LPRNQVNPEQL 170
+ VA+ S S ++W + + F L+H+ P + VP+P+G +P ++V + +
Sbjct: 22 VVVALSGSSKSKYVVTWAIEKFATEGNVGFKLLHIHPMITSVPTPMGNAIPISEVRDDVV 81
Query: 171 ETFMAQETGKRRQLLQKFLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTT 230
+ + + ++L+ + + KV V+ ++IESD VA AI + + +I ++V+G +
Sbjct: 82 TAYRQEILWQSEEMLKPYTKLFVRRKVAVEVLVIESDNVAAAIAEEVTRDSIDRIVIGGS 141
Query: 231 KSSL 234
S
Sbjct: 142 SRSF 145
>sp|Q683D5|PUB37_ARATH U-box domain-containing protein 37 OS=Arabidopsis thaliana GN=PUB37
PE=2 SV=1
Length = 400
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 63/138 (45%), Gaps = 31/138 (22%)
Query: 105 NGTQE---EDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLP 161
+G+Q+ ++ IYVAVG + L W +++ I +H PL +
Sbjct: 5 SGSQQLLMDEKIYVAVGSDLGNKSTLVWAIQNTGGKEFCIVHVH---------QPLYR-- 53
Query: 162 RNQVNPEQLETFMAQETGKRRQLLQKFLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLN 221
+E K +++L K+L C Q +V + + I+ + V K I+ LI N
Sbjct: 54 --------------KEKEKTQKILDKYLQKCRQMQVCAEMIHIKMESVEKGIIQLISERN 99
Query: 222 IRKLVVGT---TKSSLRF 236
++KLV+G T+ S+R
Sbjct: 100 VKKLVMGAASDTRYSMRM 117
>sp|Q9FGD7|PUB50_ARATH Putative U-box domain-containing protein 50 OS=Arabidopsis thaliana
GN=PUB50 PE=3 SV=1
Length = 765
Score = 47.8 bits (112), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 3/104 (2%)
Query: 93 ESSFFSFDVANGNGTQEEDIIYVAVGKS-QSSMDALSWTLRHAVNPSTLIFLIHVFP-QV 150
E+ +V +G++ E + Y+AVG Q + W L+ N I L+H+
Sbjct: 3 ETKTHELEVEAESGSRMEKV-YIAVGNDVQEGYKTIHWALKKWNNIPISIVLLHLCNISQ 61
Query: 151 KFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFLDTCSQ 194
FV +P GKLP + V+ E+L+ E K +LL K++ C +
Sbjct: 62 DFVYTPFGKLPASSVSEEKLQVLRKYEDQKIDKLLSKYITFCGK 105
>sp|Q8GZ84|PUB36_ARATH U-box domain-containing protein 36 OS=Arabidopsis thaliana GN=PUB36
PE=2 SV=2
Length = 435
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 58/133 (43%), Gaps = 14/133 (10%)
Query: 99 FDVANGNGTQEEDIIYVAVG-KSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPL 157
D+ +++ IYVAV K S +L W ++++ I +H P P
Sbjct: 22 IDIPESMEINKKEKIYVAVTEKDLESKSSLVWAIQNSGGKEFCIVHVHQ-------PIP- 73
Query: 158 GKLPRNQVNPEQLETFMAQETGKRRQLLQKFLDTCSQSKVMVDTVLIESDLVAKAILDLI 217
++ EQ +E K + +K+L C Q +V + + IE+D V K IL LI
Sbjct: 74 -----GEMFHEQKLRLYRKEKDKAHKNSEKYLQICRQMQVTAEIIYIETDSVEKGILQLI 128
Query: 218 PVLNIRKLVVGTT 230
+ KLV+G
Sbjct: 129 SQRGVTKLVMGAA 141
>sp|P0C6E7|PUB55_ARATH Putative U-box domain-containing protein 55 OS=Arabidopsis thaliana
GN=PUB55 PE=3 SV=1
Length = 568
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 60/134 (44%), Gaps = 26/134 (19%)
Query: 101 VANGNGTQEEDIIYVAVGKS-QSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGK 159
+A GN D+++VAV + S L W LR+ + + ++HV+ Q K K
Sbjct: 5 MAMGN-----DVVHVAVKSDVRESRSTLLWALRNL--GAKKVCILHVY-QPKTASPAARK 56
Query: 160 LPRNQVNPEQLETFMAQETGKRRQLLQKFLDTCSQSKVMVDTV---LIESDLVAKAILDL 216
L E+LE M + L + D C Q V D + IE + V + IL+L
Sbjct: 57 L-------EELEAIMYE-------TLHDYFDFCQQEGVNEDDIYISCIEMNDVKQGILEL 102
Query: 217 IPVLNIRKLVVGTT 230
I I+KLV+G
Sbjct: 103 IHESKIKKLVMGAA 116
>sp|Q9LU47|PUB53_ARATH Putative U-box domain-containing protein 53 OS=Arabidopsis thaliana
GN=PUB53 PE=3 SV=1
Length = 819
Score = 33.1 bits (74), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 59/139 (42%), Gaps = 29/139 (20%)
Query: 113 IYVAVGKSQSSMDALSWTLRHAVNPSTLIF-LIHVFPQVKFVPSPLGKLPRNQVN-PEQL 170
+ +A+ S S + + W L + + F LIH+ P++ +P+ G N V+ E+L
Sbjct: 34 VALAISGSIKSKNVIKWALNKFGSDKNVTFKLIHIHPKITTLPTASG----NIVSISEEL 89
Query: 171 ETFMA-------QETGKRRQLLQKFLDTCSQSKVMVDTVLIESDL--------------V 209
E A QET + LL+ F C + K+ +D ES L V
Sbjct: 90 EEVAAAYRQKVMQET--KETLLKPFKKMCERKKLKIDETRFESSLTKVAVELQVLESNSV 147
Query: 210 AKAILDLIPVLNIRKLVVG 228
A AI + I L++G
Sbjct: 148 AVAITKEVNQHLISNLIIG 166
>sp|Q9FKG5|PUB51_ARATH U-box domain-containing protein 51 OS=Arabidopsis thaliana GN=PUB51
PE=2 SV=2
Length = 796
Score = 33.1 bits (74), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 57/123 (46%), Gaps = 9/123 (7%)
Query: 112 IIYVAV-GKSQSSMDALSWTLRHAVNPSTLIF-LIHVFPQVKFVPSPLGKLPRNQVNPEQ 169
I+ VA+ G + + + W L+ + ++F L+HV P+ S K V +
Sbjct: 7 IVAVAIKGNNSKTKGVVRWALQEFASQEHVVFKLLHVQPRDSNSVSTTRKDLTTSVYKKD 66
Query: 170 LETFMAQETGKRRQLLQKFLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGT 229
++ K R++L D +V +D +++ESD +A AI + I +LV+G
Sbjct: 67 VDR-------KTREMLLPSRDMFVHREVQLDIMVLESDDIADAISKAVQDHGISELVIGA 119
Query: 230 TKS 232
+ S
Sbjct: 120 SSS 122
>sp|O48686|SNL3_ARATH Paired amphipathic helix protein Sin3-like 3 OS=Arabidopsis thaliana
GN=SNL3 PE=1 SV=3
Length = 1330
Score = 32.3 bits (72), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 51/124 (41%), Gaps = 16/124 (12%)
Query: 35 SSTSSRSGSTSSIMSEIEEEEEEEENYNSSRSNSSQLLSEINDGNGMPMPLAPIKEEIES 94
S SR G S + + E + E +EN S S S+ E D +G E+
Sbjct: 931 SGDRSREGEPSCLETRAENDAEGDENAARS-SEDSRNEYENGDVSGTESGGGEDPED--- 986
Query: 95 SFFSFDVANGNGTQEEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVP 154
D+ N N + E G+++ DA + P + FL+HV P VK+VP
Sbjct: 987 -----DLDNNNKGESE-------GEAECMADAHDAEENGSALPVSARFLLHVKPLVKYVP 1034
Query: 155 SPLG 158
S +
Sbjct: 1035 SAIA 1038
>sp|O49562|PDRP1_ARATH Pyruvate, phosphate dikinase regulatory protein 1, chloroplastic
OS=Arabidopsis thaliana GN=RP1 PE=2 SV=1
Length = 403
Score = 30.8 bits (68), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 58/129 (44%), Gaps = 20/129 (15%)
Query: 21 PIPLTSYINTISSSSSTSSRSGSTSSIMSEIEEEE--EEEENYNSSRS--NSSQLLSEIN 76
P P++S +N S + + S S + S SE + + + +N +R+ + ++L S I
Sbjct: 13 PPPISSNLNPNSKPAGSDSVSLNASEPGSERKPRKFSSQLNRWNRARTLRSGAKLDSTIT 72
Query: 77 DG-NGMPMPLAPIKEEIESSFFSFDV---ANGNGTQEEDI-----IYVAVGKSQSSMDAL 127
+G N P+ PI+ + + D ++ NG E D+ IY+ D
Sbjct: 73 NGSNNTTGPMRPIESSSRTDVSTLDSDVSSSSNGVSEADMTAAKSIYIV-------SDGT 125
Query: 128 SWTLRHAVN 136
WT HAVN
Sbjct: 126 GWTAEHAVN 134
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.129 0.355
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,450,266
Number of Sequences: 539616
Number of extensions: 3579003
Number of successful extensions: 24191
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 140
Number of HSP's that attempted gapping in prelim test: 21838
Number of HSP's gapped (non-prelim): 1765
length of query: 261
length of database: 191,569,459
effective HSP length: 115
effective length of query: 146
effective length of database: 129,513,619
effective search space: 18908988374
effective search space used: 18908988374
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (27.7 bits)