Query 024855
Match_columns 261
No_of_seqs 178 out of 1506
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 15:34:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024855.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024855hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s3t_A Nucleotide-binding prot 99.9 3.2E-25 1.1E-29 177.6 14.3 139 109-261 4-145 (146)
2 1mjh_A Protein (ATP-binding do 99.9 7.2E-25 2.5E-29 179.1 15.5 145 109-261 4-157 (162)
3 3hgm_A Universal stress protei 99.9 1.7E-25 5.7E-30 179.2 8.9 142 110-261 2-147 (147)
4 3idf_A USP-like protein; unive 99.9 3.2E-24 1.1E-28 170.5 13.4 134 110-261 1-137 (138)
5 3fg9_A Protein of universal st 99.9 7.3E-24 2.5E-28 172.4 14.4 138 109-261 14-155 (156)
6 2gm3_A Unknown protein; AT3G01 99.9 5.2E-24 1.8E-28 176.6 12.0 145 109-261 4-161 (175)
7 2dum_A Hypothetical protein PH 99.9 6.7E-24 2.3E-28 174.9 11.9 144 109-261 4-154 (170)
8 1tq8_A Hypothetical protein RV 99.9 4.3E-24 1.5E-28 176.9 10.7 141 105-261 12-156 (163)
9 3fdx_A Putative filament prote 99.9 4.5E-24 1.5E-28 170.4 9.6 139 111-261 2-142 (143)
10 2z08_A Universal stress protei 99.9 1.1E-23 3.8E-28 167.8 10.6 133 110-261 2-136 (137)
11 3dlo_A Universal stress protei 99.9 7.3E-23 2.5E-27 168.2 13.6 129 109-261 23-154 (155)
12 3tnj_A Universal stress protei 99.9 2.4E-23 8.3E-28 167.6 9.0 139 109-261 5-145 (150)
13 3mt0_A Uncharacterized protein 99.9 4E-21 1.4E-25 171.4 12.9 146 82-261 120-274 (290)
14 1jmv_A USPA, universal stress 99.8 1E-21 3.5E-26 156.5 7.6 134 110-261 2-136 (141)
15 3olq_A Universal stress protei 99.8 1.2E-20 4.1E-25 169.4 13.3 141 109-260 6-147 (319)
16 1q77_A Hypothetical protein AQ 99.8 3.7E-20 1.3E-24 147.2 13.2 131 109-261 3-137 (138)
17 3cis_A Uncharacterized protein 99.8 3.7E-20 1.3E-24 166.6 13.5 136 109-261 18-159 (309)
18 3cis_A Uncharacterized protein 99.8 3.1E-20 1.1E-24 167.0 13.0 149 82-261 153-304 (309)
19 3olq_A Universal stress protei 99.8 2.6E-20 8.8E-25 167.3 12.4 151 82-261 142-303 (319)
20 3ab8_A Putative uncharacterize 99.8 2.8E-20 9.4E-25 163.4 10.3 141 111-261 1-147 (268)
21 3loq_A Universal stress protei 99.8 6.4E-20 2.2E-24 163.7 11.0 134 82-261 154-288 (294)
22 3loq_A Universal stress protei 99.8 2.5E-20 8.6E-25 166.3 8.2 137 109-261 21-160 (294)
23 3ab8_A Putative uncharacterize 99.8 5.4E-19 1.8E-23 155.2 11.9 127 82-261 141-267 (268)
24 3mt0_A Uncharacterized protein 99.8 3.2E-19 1.1E-23 159.1 8.5 119 109-260 6-125 (290)
25 3a2k_A TRNA(Ile)-lysidine synt 94.9 0.17 5.9E-06 48.1 10.9 96 109-230 17-128 (464)
26 1wy5_A TILS, hypothetical UPF0 94.2 0.23 7.9E-06 44.6 9.7 95 109-230 23-134 (317)
27 2iel_A Hypothetical protein TT 94.0 0.13 4.6E-06 41.4 6.8 79 176-260 51-132 (138)
28 1ni5_A Putative cell cycle pro 90.4 1.6 5.5E-05 41.0 10.4 39 109-147 12-51 (433)
29 1zun_A Sulfate adenylyltransfe 81.5 6.1 0.00021 35.6 8.9 38 110-147 46-83 (325)
30 1o97_C Electron transferring f 80.9 0.98 3.4E-05 39.9 3.2 103 115-259 31-143 (264)
31 1efv_B Electron transfer flavo 80.7 1.7 6E-05 38.1 4.8 100 117-259 36-147 (255)
32 1efp_B ETF, protein (electron 79.8 2 6.8E-05 37.6 4.8 99 118-259 34-144 (252)
33 1k92_A Argininosuccinate synth 76.3 17 0.00058 34.6 10.4 36 109-148 9-44 (455)
34 2xry_A Deoxyribodipyrimidine p 76.0 10 0.00034 35.9 8.9 91 118-230 46-136 (482)
35 3bl5_A Queuosine biosynthesis 75.7 28 0.00094 28.3 10.6 34 110-147 3-36 (219)
36 1sur_A PAPS reductase; assimil 74.6 19 0.00066 29.7 9.4 34 111-148 45-78 (215)
37 3umv_A Deoxyribodipyrimidine p 70.5 11 0.00039 36.1 7.8 89 118-227 47-135 (506)
38 2pg3_A Queuosine biosynthesis 66.0 49 0.0017 27.4 10.2 33 111-147 3-35 (232)
39 2hma_A Probable tRNA (5-methyl 65.9 16 0.00056 33.5 7.6 35 109-147 8-42 (376)
40 2c5s_A THII, probable thiamine 64.7 61 0.0021 29.8 11.4 37 108-148 185-221 (413)
41 2ywb_A GMP synthase [glutamine 64.5 35 0.0012 32.4 9.9 33 111-147 210-242 (503)
42 2wsi_A FAD synthetase; transfe 63.8 25 0.00086 31.2 8.3 92 111-231 54-167 (306)
43 3ih5_A Electron transfer flavo 62.8 23 0.00079 29.9 7.5 86 110-231 3-101 (217)
44 2nz2_A Argininosuccinate synth 61.7 25 0.00085 32.8 8.1 34 110-147 5-38 (413)
45 2wq7_A RE11660P; lyase-DNA com 61.1 37 0.0013 32.6 9.4 94 118-230 38-133 (543)
46 1vbk_A Hypothetical protein PH 60.8 66 0.0023 28.4 10.5 87 109-230 178-264 (307)
47 2oq2_A Phosphoadenosine phosph 59.6 50 0.0017 28.3 9.2 37 110-147 41-77 (261)
48 4b4k_A N5-carboxyaminoimidazol 59.0 28 0.00096 29.1 7.0 49 185-233 38-89 (181)
49 3g40_A Na-K-CL cotransporter; 58.6 31 0.001 31.0 7.7 94 109-234 154-258 (294)
50 1np7_A DNA photolyase; protein 57.2 53 0.0018 30.9 9.7 91 122-230 19-109 (489)
51 3tqi_A GMP synthase [glutamine 56.8 28 0.00094 33.4 7.7 34 111-147 231-264 (527)
52 4grd_A N5-CAIR mutase, phospho 56.8 26 0.00088 29.1 6.4 50 185-234 28-80 (173)
53 1kor_A Argininosuccinate synth 56.1 56 0.0019 30.2 9.4 34 111-147 1-34 (400)
54 2dpl_A GMP synthetase, GMP syn 55.6 46 0.0016 29.4 8.5 34 111-147 21-54 (308)
55 2ywx_A Phosphoribosylaminoimid 55.6 31 0.0011 28.2 6.6 49 185-233 15-63 (157)
56 2j07_A Deoxyribodipyrimidine p 55.1 35 0.0012 31.6 7.9 45 183-230 52-96 (420)
57 3trh_A Phosphoribosylaminoimid 54.5 29 0.00098 28.7 6.3 49 185-233 22-73 (169)
58 1u3d_A Cryptochrome 1 apoprote 54.3 88 0.003 29.6 10.7 90 118-230 21-110 (509)
59 3kuu_A Phosphoribosylaminoimid 53.5 32 0.0011 28.6 6.4 49 185-233 28-79 (174)
60 3fy4_A 6-4 photolyase; DNA rep 52.8 34 0.0012 33.0 7.6 90 123-230 19-112 (537)
61 1xmp_A PURE, phosphoribosylami 52.5 37 0.0013 28.1 6.7 49 185-233 27-78 (170)
62 2l69_A Rossmann 2X3 fold prote 51.7 15 0.00051 27.8 3.8 45 185-230 15-59 (134)
63 3oow_A Phosphoribosylaminoimid 51.5 39 0.0013 27.8 6.7 49 185-233 21-72 (166)
64 3f6p_A Transcriptional regulat 50.8 54 0.0019 23.2 6.9 44 210-260 35-78 (120)
65 3rg8_A Phosphoribosylaminoimid 50.1 38 0.0013 27.7 6.4 49 185-233 18-70 (159)
66 1u11_A PURE (N5-carboxyaminoim 49.4 38 0.0013 28.3 6.3 50 185-234 37-89 (182)
67 3tvs_A Cryptochrome-1; circadi 49.2 34 0.0012 32.9 7.0 87 123-229 18-107 (538)
68 3ors_A N5-carboxyaminoimidazol 48.1 43 0.0015 27.5 6.4 49 185-233 19-70 (163)
69 2der_A TRNA-specific 2-thiouri 46.4 52 0.0018 30.2 7.4 35 109-147 16-50 (380)
70 2j4d_A Cryptochrome 3, cryptoc 45.9 91 0.0031 29.7 9.4 102 111-230 40-144 (525)
71 1iv0_A Hypothetical protein; r 44.7 16 0.00053 27.2 3.0 23 208-230 38-60 (98)
72 1sbz_A Probable aromatic acid 44.5 30 0.001 29.0 5.1 35 111-145 1-35 (197)
73 3g40_A Na-K-CL cotransporter; 43.5 47 0.0016 29.8 6.4 38 111-149 21-58 (294)
74 3gt7_A Sensor protein; structu 43.2 79 0.0027 23.5 7.1 25 207-232 38-62 (154)
75 3lp6_A Phosphoribosylaminoimid 43.1 46 0.0016 27.6 5.9 49 185-233 23-74 (174)
76 3qjg_A Epidermin biosynthesis 42.6 28 0.00094 28.6 4.5 35 110-145 5-39 (175)
77 1o4v_A Phosphoribosylaminoimid 42.2 54 0.0019 27.4 6.2 49 185-233 29-80 (183)
78 3cg4_A Response regulator rece 40.5 83 0.0028 22.6 6.7 24 207-231 38-61 (142)
79 3zqu_A Probable aromatic acid 40.5 37 0.0013 28.7 5.1 36 109-145 3-38 (209)
80 1owl_A Photolyase, deoxyribodi 40.5 49 0.0017 31.1 6.5 85 123-230 17-101 (484)
81 2j48_A Two-component sensor ki 40.1 83 0.0028 21.3 6.3 22 210-231 34-55 (119)
82 3i42_A Response regulator rece 39.8 82 0.0028 22.2 6.4 46 207-260 34-82 (127)
83 2ejb_A Probable aromatic acid 39.1 41 0.0014 27.8 5.1 34 111-145 2-35 (189)
84 2e0i_A 432AA long hypothetical 38.6 68 0.0023 29.9 7.1 83 124-230 16-98 (440)
85 2a9o_A Response regulator; ess 38.5 96 0.0033 21.4 7.0 43 211-260 35-77 (120)
86 3rjz_A N-type ATP pyrophosphat 38.4 1.2E+02 0.0042 25.9 8.2 94 111-232 5-101 (237)
87 3kcq_A Phosphoribosylglycinami 36.8 80 0.0027 26.7 6.6 86 109-231 7-92 (215)
88 1g63_A Epidermin modifying enz 36.6 32 0.0011 28.4 3.9 35 110-145 2-36 (181)
89 3h5i_A Response regulator/sens 36.0 1.2E+02 0.0042 21.9 7.0 47 207-260 36-83 (140)
90 3tqr_A Phosphoribosylglycinami 35.8 1.4E+02 0.0046 25.2 7.9 85 109-230 4-92 (215)
91 3cnb_A DNA-binding response re 35.4 1.2E+02 0.0041 21.6 7.3 44 210-260 43-89 (143)
92 1dnp_A DNA photolyase; DNA rep 35.3 52 0.0018 30.9 5.7 47 183-230 56-104 (471)
93 1gpm_A GMP synthetase, XMP ami 34.9 1.7E+02 0.0057 27.8 9.3 35 110-147 227-261 (525)
94 3n0v_A Formyltetrahydrofolate 34.6 1.7E+02 0.0058 25.6 8.7 85 109-231 89-176 (286)
95 3grc_A Sensor protein, kinase; 34.0 1.3E+02 0.0044 21.5 7.7 22 210-231 39-60 (140)
96 3da8_A Probable 5'-phosphoribo 34.0 1.7E+02 0.006 24.5 8.3 84 109-230 11-98 (215)
97 3o1l_A Formyltetrahydrofolate 33.9 1.7E+02 0.0058 25.9 8.6 84 109-230 104-190 (302)
98 3qk7_A Transcriptional regulat 33.7 1.2E+02 0.0043 25.1 7.5 66 185-261 29-94 (294)
99 3o1i_D Periplasmic protein TOR 33.1 87 0.003 25.9 6.3 60 191-261 30-93 (304)
100 1p3y_1 MRSD protein; flavoprot 32.9 39 0.0013 28.1 4.0 35 110-145 8-42 (194)
101 3l6u_A ABC-type sugar transpor 32.7 98 0.0033 25.5 6.6 64 187-261 29-95 (293)
102 3lou_A Formyltetrahydrofolate 32.3 2.1E+02 0.0071 25.2 8.9 85 109-231 94-181 (292)
103 1xhf_A DYE resistance, aerobic 32.0 1.3E+02 0.0044 20.9 7.5 44 210-260 36-79 (123)
104 2q5c_A NTRC family transcripti 31.9 42 0.0014 27.7 4.0 18 244-261 59-76 (196)
105 3m9w_A D-xylose-binding peripl 31.2 98 0.0033 26.0 6.4 39 191-230 27-67 (313)
106 1zgz_A Torcad operon transcrip 31.0 1.3E+02 0.0045 20.8 7.1 44 210-260 35-78 (122)
107 1v6t_A Hypothetical UPF0271 pr 31.0 1.7E+02 0.0057 25.6 7.8 104 115-232 33-147 (255)
108 3us8_A Isocitrate dehydrogenas 29.8 65 0.0022 30.3 5.3 25 121-145 208-232 (427)
109 1ccw_A Protein (glutamate muta 29.7 67 0.0023 24.7 4.6 37 192-230 27-63 (137)
110 4aoy_A Isocitrate dehydrogenas 29.6 96 0.0033 28.9 6.4 25 121-145 185-209 (402)
111 2f6u_A GGGPS, (S)-3-O-geranylg 29.4 58 0.002 28.0 4.5 44 211-261 23-67 (234)
112 1vhx_A Putative holliday junct 28.8 19 0.00065 28.8 1.2 23 208-230 42-64 (150)
113 2gkg_A Response regulator homo 28.6 1E+02 0.0035 21.4 5.2 22 210-231 38-59 (127)
114 2qzj_A Two-component response 28.5 1.5E+02 0.005 21.4 6.3 22 210-231 37-58 (136)
115 2qfy_A Isocitrate dehydrogenas 28.4 56 0.0019 30.7 4.6 25 121-145 203-227 (427)
116 2pju_A Propionate catabolism o 28.3 83 0.0028 26.7 5.3 18 244-261 71-88 (225)
117 3cg0_A Response regulator rece 28.0 1.3E+02 0.0043 21.4 5.8 22 210-231 43-64 (140)
118 3rot_A ABC sugar transporter, 27.6 65 0.0022 26.9 4.6 60 192-261 29-92 (297)
119 3g1w_A Sugar ABC transporter; 27.3 1.3E+02 0.0044 25.0 6.4 61 191-261 29-92 (305)
120 1qzu_A Hypothetical protein MD 27.2 41 0.0014 28.2 3.1 36 109-145 18-54 (206)
121 3ecs_A Translation initiation 26.8 78 0.0027 28.4 5.1 57 192-260 168-228 (315)
122 1lwd_A Isocitrate dehydrogenas 26.7 84 0.0029 29.3 5.5 25 121-145 187-211 (413)
123 3gl9_A Response regulator; bet 26.3 1.7E+02 0.0058 20.5 7.6 26 207-233 33-58 (122)
124 3lua_A Response regulator rece 26.1 1.7E+02 0.0058 20.9 6.2 25 207-232 36-61 (140)
125 1w0d_A 3-isopropylmalate dehyd 26.0 49 0.0017 30.1 3.6 59 83-145 116-178 (337)
126 2qxy_A Response regulator; reg 25.5 1.8E+02 0.0062 20.7 6.3 23 210-233 37-59 (142)
127 2zay_A Response regulator rece 25.4 97 0.0033 22.5 4.7 46 207-260 39-87 (147)
128 2yxb_A Coenzyme B12-dependent 25.4 45 0.0015 26.6 2.9 37 192-230 42-78 (161)
129 3egc_A Putative ribose operon 25.2 1.9E+02 0.0065 23.8 7.1 64 186-261 28-93 (291)
130 3m9w_A D-xylose-binding peripl 25.0 2.5E+02 0.0085 23.3 7.9 19 113-131 100-118 (313)
131 3kht_A Response regulator; PSI 24.9 1.9E+02 0.0066 20.7 7.7 35 194-231 27-61 (144)
132 3dbi_A Sugar-binding transcrip 24.5 1.5E+02 0.0053 25.1 6.5 64 187-261 84-149 (338)
133 1meo_A Phosophoribosylglycinam 24.4 3E+02 0.01 22.7 8.2 84 111-230 1-88 (209)
134 3tb6_A Arabinose metabolism tr 24.1 2E+02 0.0069 23.5 7.0 40 190-230 39-80 (298)
135 3vmk_A 3-isopropylmalate dehyd 23.9 70 0.0024 29.5 4.3 59 83-145 141-203 (375)
136 3hv2_A Response regulator/HD d 23.7 1.6E+02 0.0053 21.6 5.7 22 210-231 47-68 (153)
137 2i2x_B MTAC, methyltransferase 23.7 1.6E+02 0.0055 25.0 6.4 37 192-230 147-183 (258)
138 3lqk_A Dipicolinate synthase s 23.4 69 0.0023 26.8 3.8 36 109-145 6-42 (201)
139 3t6k_A Response regulator rece 23.3 2.1E+02 0.0071 20.5 7.1 26 207-233 35-60 (136)
140 1s8n_A Putative antiterminator 23.2 2E+02 0.0068 22.3 6.6 44 210-260 47-90 (205)
141 2is8_A Molybdopterin biosynthe 23.2 1E+02 0.0034 24.5 4.7 35 192-227 30-68 (164)
142 2jba_A Phosphate regulon trans 22.9 1.8E+02 0.006 20.2 5.7 24 207-231 33-56 (127)
143 3iwt_A 178AA long hypothetical 22.9 1.3E+02 0.0046 23.8 5.4 36 192-228 49-88 (178)
144 2x5e_A UPF0271 protein PA4511; 22.9 1.6E+02 0.0056 25.7 6.2 102 115-230 39-151 (252)
145 1y5e_A Molybdenum cofactor bio 22.8 93 0.0032 24.8 4.4 33 194-227 42-78 (169)
146 2uxq_A Isocitrate dehydrogenas 22.7 72 0.0025 29.7 4.1 25 121-145 184-208 (402)
147 3kke_A LACI family transcripti 22.7 3E+02 0.01 22.8 8.0 43 188-230 37-80 (303)
148 3nbm_A PTS system, lactose-spe 22.6 70 0.0024 24.0 3.4 54 192-261 30-84 (108)
149 3uug_A Multiple sugar-binding 22.5 1.4E+02 0.0048 25.1 5.8 64 188-261 25-90 (330)
150 3k9c_A Transcriptional regulat 22.5 2.2E+02 0.0074 23.5 7.0 43 188-230 33-75 (289)
151 3gxq_A Putative regulator of t 22.4 61 0.0021 20.9 2.5 28 198-225 11-38 (54)
152 1mvl_A PPC decarboxylase athal 22.2 97 0.0033 26.1 4.5 35 109-145 18-52 (209)
153 3bvp_A INT, TP901-1 integrase; 22.1 2.3E+02 0.008 21.2 6.5 41 190-230 32-80 (138)
154 3ty4_A Probable homoisocitrate 22.1 53 0.0018 30.3 3.0 60 82-145 123-199 (366)
155 3jy6_A Transcriptional regulat 21.9 1.9E+02 0.0066 23.6 6.4 43 187-230 28-72 (276)
156 3s40_A Diacylglycerol kinase; 21.7 1.2E+02 0.004 26.4 5.2 33 194-227 37-69 (304)
157 2oqr_A Sensory transduction pr 21.6 2.1E+02 0.0072 22.6 6.4 43 211-260 38-80 (230)
158 3fni_A Putative diflavin flavo 21.5 1.4E+02 0.0047 23.3 5.1 39 192-233 29-69 (159)
159 1qv9_A F420-dependent methylen 21.4 64 0.0022 28.4 3.2 44 211-261 54-97 (283)
160 1mb3_A Cell division response 21.4 2.1E+02 0.007 19.7 6.5 24 210-233 34-57 (124)
161 2amj_A Modulator of drug activ 21.4 95 0.0033 25.3 4.3 45 183-230 34-79 (204)
162 1vb5_A Translation initiation 21.3 1.7E+02 0.0057 25.4 6.1 54 195-260 159-216 (276)
163 3l49_A ABC sugar (ribose) tran 21.2 91 0.0031 25.7 4.2 43 187-230 26-70 (291)
164 3a11_A Translation initiation 21.0 1.4E+02 0.0046 27.0 5.6 37 220-260 208-248 (338)
165 2rjn_A Response regulator rece 20.8 2.5E+02 0.0085 20.4 7.1 22 210-231 40-61 (154)
166 3hly_A Flavodoxin-like domain; 20.8 1.3E+02 0.0046 23.2 4.9 36 192-230 25-60 (161)
167 3uug_A Multiple sugar-binding 20.8 2.4E+02 0.0083 23.5 7.0 25 113-137 102-126 (330)
168 3hdv_A Response regulator; PSI 20.6 2.3E+02 0.0079 20.0 7.1 34 195-232 30-63 (136)
169 1qkk_A DCTD, C4-dicarboxylate 20.5 2.5E+02 0.0086 20.4 6.6 22 210-231 36-57 (155)
170 1zh2_A KDP operon transcriptio 20.5 2.1E+02 0.0072 19.5 5.8 45 208-260 33-77 (121)
171 3k32_A Uncharacterized protein 20.4 1.2E+02 0.0041 24.7 4.7 34 110-147 6-39 (203)
172 3mcu_A Dipicolinate synthase, 20.3 88 0.003 26.3 3.9 36 109-145 4-40 (207)
173 8abp_A L-arabinose-binding pro 20.1 89 0.0031 26.0 3.9 40 213-261 49-88 (306)
174 1mkz_A Molybdenum cofactor bio 20.0 1.5E+02 0.005 23.7 5.1 35 192-227 37-75 (172)
No 1
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=99.93 E-value=3.2e-25 Score=177.62 Aligned_cols=139 Identities=12% Similarity=0.097 Sum_probs=116.2
Q ss_pred CCCeEEEeecCChhHHHHHHHHHHHhcCCCCeEEEEEEecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 024855 109 EEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKF 188 (261)
Q Consensus 109 ~~kkILVaVDgSe~S~~AL~~Al~~A~~~ga~L~LLHVv~~~~~~p~~~g~~~~~~~~~e~~e~~~~~~~e~~~~~Lek~ 188 (261)
.+++||||+|+|+.+.+|++||+.+|+..+++|++|||+++...... . .......+.++.++++++.++++
T Consensus 4 ~~~~ILv~~D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~--~-------~~~~~~~~~~~~~~~~~~~l~~~ 74 (146)
T 3s3t_A 4 RYTNILVPVDSSDAAQAAFTEAVNIAQRHQANLTALYVVDDSAYHTP--A-------LDPVLSELLDAEAAHAKDAMRQR 74 (146)
T ss_dssp CCCEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEEECCCCCCG--G-------GHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccceEEEEcCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCcccccc--c-------cccccHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999988999999999987542110 0 00123445566778888899999
Q ss_pred HHHhhcCCC-cEEEEEEEcCChHHHHHH-hhhhCCCcEEEECCC-CCCcccccccceeccHHHHHhccCCcceeeC
Q 024855 189 LDTCSQSKV-MVDTVLIESDLVAKAILD-LIPVLNIRKLVVGTT-KSSLRFHFHSINFNGIGTLILFYFSILLFCF 261 (261)
Q Consensus 189 ~~~~~~~gV-~ve~~vieGd~~aeaIv~-~A~e~~aDLIVmGsr-~sgl~~~~r~l~lGSVA~~Vlr~A~ipv~~~ 261 (261)
.+.+...|+ +++..+..|+ +++.|++ +|++.++||||||+| ++++.+ +++||++++|+++++||||.+
T Consensus 75 ~~~~~~~g~~~~~~~~~~g~-~~~~I~~~~a~~~~~dliV~G~~~~~~~~~----~~~Gs~~~~vl~~~~~pVlvV 145 (146)
T 3s3t_A 75 QQFVATTSAPNLKTEISYGI-PKHTIEDYAKQHPEIDLIVLGATGTNSPHR----VAVGSTTSYVVDHAPCNVIVI 145 (146)
T ss_dssp HHHHTTSSCCCCEEEEEEEC-HHHHHHHHHHHSTTCCEEEEESCCSSCTTT----CSSCHHHHHHHHHCSSEEEEE
T ss_pred HHHHHhcCCcceEEEEecCC-hHHHHHHHHHhhcCCCEEEECCCCCCCcce----EEEcchHHHHhccCCCCEEEe
Confidence 999988899 8998888886 5899999 999999999999999 455554 678999999999999999963
No 2
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=99.93 E-value=7.2e-25 Score=179.07 Aligned_cols=145 Identities=12% Similarity=0.129 Sum_probs=113.9
Q ss_pred CCCeEEEeecCChhHHHHHHHHHHHhcCCCCeEEEEEEecCC-----CCCCCCCCC--C-CCCCCChhHHHHHHHHHHHH
Q 024855 109 EEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQV-----KFVPSPLGK--L-PRNQVNPEQLETFMAQETGK 180 (261)
Q Consensus 109 ~~kkILVaVDgSe~S~~AL~~Al~~A~~~ga~L~LLHVv~~~-----~~~p~~~g~--~-~~~~~~~e~~e~~~~~~~e~ 180 (261)
.+++||||+|+|+.+.+|++||+++|+..+++|++|||+++. ......... + +. ..+..+++.++.+++
T Consensus 4 ~~~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 80 (162)
T 1mjh_A 4 MYKKILYPTDFSETAEIALKHVKAFKTLKAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKS---VEEFENELKNKLTEE 80 (162)
T ss_dssp CCCEEEEECCSCHHHHHHHHHHHHTCCSSCCEEEEEEEEEGGGTC--------------------CHHHHHHHHHHHHHH
T ss_pred ccceEEEEeCCCHHHHHHHHHHHHHHhhcCCeEEEEEEecCccccccccccccccccccccc---hhhhHHHHHHHHHHH
Confidence 578999999999999999999999999999999999999754 110000000 1 10 111133455666778
Q ss_pred HHHHHHHHHHHhhcCCCcEEEEEEEcCChHHHHHHhhhhCCCcEEEECCC-CCCcccccccceeccHHHHHhccCCccee
Q 024855 181 RRQLLQKFLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTT-KSSLRFHFHSINFNGIGTLILFYFSILLF 259 (261)
Q Consensus 181 ~~~~Lek~~~~~~~~gV~ve~~vieGd~~aeaIv~~A~e~~aDLIVmGsr-~sgl~~~~r~l~lGSVA~~Vlr~A~ipv~ 259 (261)
+++.|+++.+.+...|++++..+..|+ +++.|+++|+++++||||||+| ++++.+ +++||++++|+++++||||
T Consensus 81 ~~~~l~~~~~~~~~~g~~~~~~v~~G~-~~~~I~~~a~~~~~dlIV~G~~g~~~~~~----~~~GSv~~~vl~~~~~pVl 155 (162)
T 1mjh_A 81 AKNKMENIKKELEDVGFKVKDIIVVGI-PHEEIVKIAEDEGVDIIIMGSHGKTNLKE----ILLGSVTENVIKKSNKPVL 155 (162)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEEEEC-HHHHHHHHHHHTTCSEEEEESCCSSCCTT----CSSCHHHHHHHHHCCSCEE
T ss_pred HHHHHHHHHHHHHHcCCceEEEEcCCC-HHHHHHHHHHHcCCCEEEEcCCCCCCccc----eEecchHHHHHHhCCCCEE
Confidence 888999999988888999988888876 5899999999999999999999 455555 6789999999999999999
Q ss_pred eC
Q 024855 260 CF 261 (261)
Q Consensus 260 ~~ 261 (261)
.+
T Consensus 156 vv 157 (162)
T 1mjh_A 156 VV 157 (162)
T ss_dssp EE
T ss_pred EE
Confidence 74
No 3
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=99.92 E-value=1.7e-25 Score=179.15 Aligned_cols=142 Identities=12% Similarity=0.124 Sum_probs=110.6
Q ss_pred CCeEEEeecCChhHHHHHHHHHHHhcCCCCeEEEEEEecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 024855 110 EDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFL 189 (261)
Q Consensus 110 ~kkILVaVDgSe~S~~AL~~Al~~A~~~ga~L~LLHVv~~~~~~p~~~g~~~~~~~~~e~~e~~~~~~~e~~~~~Lek~~ 189 (261)
+++||||+|+|+.+.+|++||+.+|++.+++|++|||+++........+..+ .+..+.+.+..++.+++.++++.
T Consensus 2 ~~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~ 76 (147)
T 3hgm_A 2 FNRIMVPVDGSKGAVKALEKGVGLQQLTGAELYILCVFKHHSLLEASLSMAR-----PEQLDIPDDALKDYATEIAVQAK 76 (147)
T ss_dssp CSEEEEECCSBHHHHHHHHHHHHHHHHHCCEEEEEEEECCHHHHHHTBSSCC-----CGGGCCCTTHHHHHHHHHHHHHH
T ss_pred CceEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCcccccccccccC-----hhhhhhHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999989999999999986431000000001 01111122344566777888888
Q ss_pred HHhhcCCCcE---EEEEEEcCChHHHHHHhhhhCCCcEEEECCCC-CCcccccccceeccHHHHHhccCCcceeeC
Q 024855 190 DTCSQSKVMV---DTVLIESDLVAKAILDLIPVLNIRKLVVGTTK-SSLRFHFHSINFNGIGTLILFYFSILLFCF 261 (261)
Q Consensus 190 ~~~~~~gV~v---e~~vieGd~~aeaIv~~A~e~~aDLIVmGsr~-sgl~~~~r~l~lGSVA~~Vlr~A~ipv~~~ 261 (261)
+.+...|+++ +..+..|+ +++.|+++|+++++||||||+|+ +++.+ +++||++++|+++++||||.+
T Consensus 77 ~~~~~~g~~~~~~~~~~~~g~-~~~~I~~~a~~~~~dliV~G~~~~~~~~~----~~~Gs~~~~vl~~~~~pVlvV 147 (147)
T 3hgm_A 77 TRATELGVPADKVRAFVKGGR-PSRTIVRFARKRECDLVVIGAQGTNGDKS----LLLGSVAQRVAGSAHCPVLVV 147 (147)
T ss_dssp HHHHHTTCCGGGEEEEEEESC-HHHHHHHHHHHTTCSEEEECSSCTTCCSC----CCCCHHHHHHHHHCSSCEEEC
T ss_pred HHHHhcCCCccceEEEEecCC-HHHHHHHHHHHhCCCEEEEeCCCCccccc----eeeccHHHHHHhhCCCCEEEC
Confidence 8888889888 88877775 58999999999999999999994 56555 678999999999999999974
No 4
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=99.91 E-value=3.2e-24 Score=170.50 Aligned_cols=134 Identities=16% Similarity=0.166 Sum_probs=110.2
Q ss_pred CCeEEEeecCChhHHHHHHHHHHHh-cCCCCeEEEEEEecCCCCCCCCCCCCCCCCCChhHHHHHHHHHH-HHHHHHHHH
Q 024855 110 EDIIYVAVGKSQSSMDALSWTLRHA-VNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQET-GKRRQLLQK 187 (261)
Q Consensus 110 ~kkILVaVDgSe~S~~AL~~Al~~A-~~~ga~L~LLHVv~~~~~~p~~~g~~~~~~~~~e~~e~~~~~~~-e~~~~~Lek 187 (261)
+++||||+|+|+.+.+|++||+.+| +..+++|++|||+++...... ......++.++.+ +++++.+++
T Consensus 1 ~~~ILv~~D~s~~s~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~l~~ 70 (138)
T 3idf_A 1 MKKLLFAIDDTEACERAAQYILDMFGKDADCTLTLIHVKPEFMLYGE----------AVLAAYDEIEMKEEEKAKLLTQK 70 (138)
T ss_dssp CEEEEEECCSSHHHHHHHHHHHHHHTTCTTEEEEEEEEECCCCCCHH----------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEeCCCHHHHHHHHHHHHHhccCCCCEEEEEEEecCCCcccc----------cccCcHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999999999 999999999999987532100 0011123445556 778889999
Q ss_pred HHHHhhcCCCcEEEEEEEcCChHHHHHHhhhhCCCcEEEECCCC-CCcccccccceeccHHHHHhccCCcceeeC
Q 024855 188 FLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTTK-SSLRFHFHSINFNGIGTLILFYFSILLFCF 261 (261)
Q Consensus 188 ~~~~~~~~gV~ve~~vieGd~~aeaIv~~A~e~~aDLIVmGsr~-sgl~~~~r~l~lGSVA~~Vlr~A~ipv~~~ 261 (261)
+.+.+...|++++..+..|+ +++.|+++|+ ++||||||+|+ +++.+ ++ ||++++|+++++||||.+
T Consensus 71 ~~~~~~~~g~~~~~~v~~g~-~~~~I~~~a~--~~dliV~G~~~~~~~~~----~~-Gs~~~~vl~~~~~pVlvv 137 (138)
T 3idf_A 71 FSTFFTEKGINPFVVIKEGE-PVEMVLEEAK--DYNLLIIGSSENSFLNK----IF-ASHQDDFIQKAPIPVLIV 137 (138)
T ss_dssp HHHHHHTTTCCCEEEEEESC-HHHHHHHHHT--TCSEEEEECCTTSTTSS----CC-CCTTCHHHHHCSSCEEEE
T ss_pred HHHHHHHCCCCeEEEEecCC-hHHHHHHHHh--cCCEEEEeCCCcchHHH----Hh-CcHHHHHHhcCCCCEEEe
Confidence 99999889999998888886 5899999999 99999999994 55554 67 999999999999999963
No 5
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=99.91 E-value=7.3e-24 Score=172.35 Aligned_cols=138 Identities=16% Similarity=0.163 Sum_probs=110.8
Q ss_pred CCCeEEEeec--CChhHHHHHHHHHHHhcCCCCeEEEEEEecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHH
Q 024855 109 EEDIIYVAVG--KSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQ 186 (261)
Q Consensus 109 ~~kkILVaVD--gSe~S~~AL~~Al~~A~~~ga~L~LLHVv~~~~~~p~~~g~~~~~~~~~e~~e~~~~~~~e~~~~~Le 186 (261)
.+++||||+| +|+.+.+|++||+.+|+..+++|++|||+++..... +. ... .++.+..++.+++.|+
T Consensus 14 ~~~~ILv~vD~~~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~--~~-----~~~----~~~~~~~~~~~~~~l~ 82 (156)
T 3fg9_A 14 VYRRILLTVDEDDNTSSERAFRYATTLAHDYDVPLGICSVLESEDINI--FD-----SLT----PSKIQAKRKHVEDVVA 82 (156)
T ss_dssp CCC-EEEECCSCCCHHHHHHHHHHHHHHHHHTCCEEEEEEECCCCTTC--CC-----SSH----HHHHHHHHHHHHHHHH
T ss_pred cCceEEEEECCCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEeCCCccc--cc-----cCC----HHHHHHHHHHHHHHHH
Confidence 6899999999 999999999999999998899999999998754211 11 111 2344556677888899
Q ss_pred HHHHHhhcCCC-cEEEEEEEcCChHHHHHHh-hhhCCCcEEEECCCCCCcccccccceeccHHHHHhccCCcceeeC
Q 024855 187 KFLDTCSQSKV-MVDTVLIESDLVAKAILDL-IPVLNIRKLVVGTTKSSLRFHFHSINFNGIGTLILFYFSILLFCF 261 (261)
Q Consensus 187 k~~~~~~~~gV-~ve~~vieGd~~aeaIv~~-A~e~~aDLIVmGsr~sgl~~~~r~l~lGSVA~~Vlr~A~ipv~~~ 261 (261)
++.+.++..|+ .++..+..++.++++|+++ |+++++||||||+|+.+..+ .++||++++|+++++||||.+
T Consensus 83 ~~~~~~~~~g~~~~~~~v~~~g~~~~~I~~~~a~~~~~DlIV~G~~g~~~~~----~~~Gs~~~~vl~~a~~PVlvV 155 (156)
T 3fg9_A 83 EYVQLAEQRGVNQVEPLVYEGGDVDDVILEQVIPEFKPDLLVTGADTEFPHS----KIAGAIGPRLARKAPISVIVV 155 (156)
T ss_dssp HHHHHHHHHTCSSEEEEEEECSCHHHHHHHTHHHHHCCSEEEEETTCCCTTS----SSCSCHHHHHHHHCSSEEEEE
T ss_pred HHHHHHHHcCCCceEEEEEeCCCHHHHHHHHHHHhcCCCEEEECCCCCCccc----eeecchHHHHHHhCCCCEEEe
Confidence 99888888899 4888888834468999999 99999999999999544334 357999999999999999963
No 6
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=99.91 E-value=5.2e-24 Score=176.59 Aligned_cols=145 Identities=20% Similarity=0.263 Sum_probs=103.7
Q ss_pred CCCeEEEeecCCh---------hHHHHHHHHHHHhcC---CCCeEEEEEEecCCCCCCCCCCCCCCCCCChhHHHHHHHH
Q 024855 109 EEDIIYVAVGKSQ---------SSMDALSWTLRHAVN---PSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQ 176 (261)
Q Consensus 109 ~~kkILVaVDgSe---------~S~~AL~~Al~~A~~---~ga~L~LLHVv~~~~~~p~~~g~~~~~~~~~e~~e~~~~~ 176 (261)
.+++||||+|+|+ .+.+||+||++++.+ .+++|++|||+++... .+..+......++..+++.++
T Consensus 4 ~~~~ILv~vD~s~~~~~~~~~~~s~~al~~a~~la~~~~~~~a~l~ll~v~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 80 (175)
T 2gm3_A 4 EPTKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDED---GFDDVDSIYASPEDFRDMRQS 80 (175)
T ss_dssp -CEEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTSEEEEEEEEEC-------------CCCCSHHHHHHHTTS
T ss_pred CccEEEEEECCCcccccccccHHHHHHHHHHHHHhhcccCCCCEEEEEEEeecccc---cccccccccCCHHHHHHHHHH
Confidence 6789999999999 999999999998754 5899999999865321 010000001123333444444
Q ss_pred HHHHHHHHHHHHHHHhhcCCCcEEEEEEEcCChHHHHHHhhhhCCCcEEEECCCC-CCcccccccceeccHHHHHhccCC
Q 024855 177 ETGKRRQLLQKFLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTTK-SSLRFHFHSINFNGIGTLILFYFS 255 (261)
Q Consensus 177 ~~e~~~~~Lek~~~~~~~~gV~ve~~vieGd~~aeaIv~~A~e~~aDLIVmGsr~-sgl~~~~r~l~lGSVA~~Vlr~A~ 255 (261)
.++++++.|+++.+.+...|++++..+..|+ +++.|+++|+++++||||||+|+ +++.+ +++||++++|+++++
T Consensus 81 ~~~~~~~~l~~~~~~~~~~g~~~~~~v~~G~-~~~~I~~~a~~~~~DLIVmG~~g~~~~~~----~~~Gsva~~vl~~a~ 155 (175)
T 2gm3_A 81 NKAKGLHLLEFFVNKCHEIGVGCEAWIKTGD-PKDVICQEVKRVRPDFLVVGSRGLGRFQK----VFVGTVSAFCVKHAE 155 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCEEEEEEEESC-HHHHHHHHHHHHCCSEEEEEECCCC------------CHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHCCCceEEEEecCC-HHHHHHHHHHHhCCCEEEEeCCCCChhhh----hhcCchHHHHHhCCC
Confidence 5566777888888888878999988888776 58999999999999999999994 55554 678999999999999
Q ss_pred cceeeC
Q 024855 256 ILLFCF 261 (261)
Q Consensus 256 ipv~~~ 261 (261)
||||.+
T Consensus 156 ~pVlvv 161 (175)
T 2gm3_A 156 CPVMTI 161 (175)
T ss_dssp SCEEEE
T ss_pred CCEEEE
Confidence 999963
No 7
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=99.90 E-value=6.7e-24 Score=174.89 Aligned_cols=144 Identities=9% Similarity=0.026 Sum_probs=108.2
Q ss_pred CCCeEEEeecCChhHHHHHHHHHHHhcCCCCeEEEEEEecCCCCCCCCCCCCCC----CCCChhHHHHHHHHHHHHHHHH
Q 024855 109 EEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPR----NQVNPEQLETFMAQETGKRRQL 184 (261)
Q Consensus 109 ~~kkILVaVDgSe~S~~AL~~Al~~A~~~ga~L~LLHVv~~~~~~p~~~g~~~~----~~~~~e~~e~~~~~~~e~~~~~ 184 (261)
.+++||||+|+|+.+.+|++||+.+|++.+++|++|||+++.... .....++. ..... +++.+..++++++.
T Consensus 4 m~~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 79 (170)
T 2dum_A 4 MFRKVLFPTDFSEGAYRAVEVFEKRNKMEVGEVILLHVIDEGTLE-ELMDGYSFFYDNAEIEL---KDIKEKLKEEASRK 79 (170)
T ss_dssp CCSEEEEECCSSHHHHHHHHHHHHHCCSCCSEEEEEEEEETTGGG-CCC------------CC---TTSHHHHHHHHHHH
T ss_pred ccceEEEEecCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCcccc-ccccccccccccccccH---HHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999999764310 00001110 00000 12223445666777
Q ss_pred HHHHHHHhhcCCCcEEE--EEEEcCChHHHHHHhhhhCCCcEEEECCC-CCCcccccccceeccHHHHHhccCCcceeeC
Q 024855 185 LQKFLDTCSQSKVMVDT--VLIESDLVAKAILDLIPVLNIRKLVVGTT-KSSLRFHFHSINFNGIGTLILFYFSILLFCF 261 (261)
Q Consensus 185 Lek~~~~~~~~gV~ve~--~vieGd~~aeaIv~~A~e~~aDLIVmGsr-~sgl~~~~r~l~lGSVA~~Vlr~A~ipv~~~ 261 (261)
|+++.+.+...|++++. .+..|+ +++.|+++|+++++||||||+| ++++.+ +++||++++|+++++||||++
T Consensus 80 l~~~~~~~~~~g~~~~~~~~~~~g~-~~~~I~~~a~~~~~DlIV~G~~g~~~~~~----~~~Gsv~~~vl~~~~~PVlvv 154 (170)
T 2dum_A 80 LQEKAEEVKRAFRAKNVRTIIRFGI-PWDEIVKVAEEENVSLIILPSRGKLSLSH----EFLGSTVMRVLRKTKKPVLII 154 (170)
T ss_dssp HHHHHHHHHHHTTCSEEEEEEEEEC-HHHHHHHHHHHTTCSEEEEESCCCCC--T----TCCCHHHHHHHHHCSSCEEEE
T ss_pred HHHHHHHHHHcCCceeeeeEEecCC-hHHHHHHHHHHcCCCEEEECCCCCCcccc----ceechHHHHHHHhCCCCEEEE
Confidence 88888877777888887 777776 5899999999999999999999 455554 678999999999999999974
No 8
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=99.90 E-value=4.3e-24 Score=176.94 Aligned_cols=141 Identities=13% Similarity=0.062 Sum_probs=105.8
Q ss_pred CCCCCCCeEEEeecCChhHHHHHHHHHHHhcCCCCeEEEE--EEecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHH
Q 024855 105 NGTQEEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLI--HVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRR 182 (261)
Q Consensus 105 ~~~~~~kkILVaVDgSe~S~~AL~~Al~~A~~~ga~L~LL--HVv~~~~~~p~~~g~~~~~~~~~e~~e~~~~~~~e~~~ 182 (261)
.....+++||||+|+|+.+.+|++||+++|+ .+++|++| ||+++.... .+ ... . ...+.++.+++++
T Consensus 12 ~~~~~~~~ILv~vD~s~~s~~al~~A~~lA~-~~a~l~ll~a~v~~~~~~~---~~-~~~---~---~~~~~~~~~~~~~ 80 (163)
T 1tq8_A 12 MSLSAYKTVVVGTDGSDSSMRAVDRAAQIAG-ADAKLIIASAYLPQHEDAR---AA-DIL---K---DESYKVTGTAPIY 80 (163)
T ss_dssp -CCCCCCEEEEECCSSHHHHHHHHHHHHHHT-TTSEEEEEEECCC------------------------------CCTHH
T ss_pred cccccCCEEEEEcCCCHHHHHHHHHHHHHhC-CCCEEEEEEeeeccCcccc---cc-ccc---c---cHHHHHHHHHHHH
Confidence 3444789999999999999999999999999 99999999 887653210 01 000 0 0122233445667
Q ss_pred HHHHHHHHHhhcCCCc-EEEEEEEcCChHHHHHHhhhhCCCcEEEECCC-CCCcccccccceeccHHHHHhccCCcceee
Q 024855 183 QLLQKFLDTCSQSKVM-VDTVLIESDLVAKAILDLIPVLNIRKLVVGTT-KSSLRFHFHSINFNGIGTLILFYFSILLFC 260 (261)
Q Consensus 183 ~~Lek~~~~~~~~gV~-ve~~vieGd~~aeaIv~~A~e~~aDLIVmGsr-~sgl~~~~r~l~lGSVA~~Vlr~A~ipv~~ 260 (261)
+.|+++.+.+...|++ ++..+..|+ ++++|+++|++.++||||||+| ++++.+ +++||++++|+++++||||+
T Consensus 81 ~~l~~~~~~~~~~gv~~v~~~v~~G~-~~~~I~~~a~~~~~DLIV~G~~g~~~~~~----~~lGSva~~vl~~a~~PVlv 155 (163)
T 1tq8_A 81 EILHDAKERAHNAGAKNVEERPIVGA-PVDALVNLADEEKADLLVVGNVGLSTIAG----RLLGSVPANVSRRAKVDVLI 155 (163)
T ss_dssp HHHHHHHHHHHTTTCCEEEEEEECSS-HHHHHHHHHHHTTCSEEEEECCCCCSHHH----HHTBBHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHcCCCeEEEEEecCC-HHHHHHHHHHhcCCCEEEECCCCCCcccc----eeeccHHHHHHHhCCCCEEE
Confidence 7888888888888998 888887775 5899999999999999999999 556555 67899999999999999997
Q ss_pred C
Q 024855 261 F 261 (261)
Q Consensus 261 ~ 261 (261)
+
T Consensus 156 V 156 (163)
T 1tq8_A 156 V 156 (163)
T ss_dssp E
T ss_pred E
Confidence 4
No 9
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=99.90 E-value=4.5e-24 Score=170.38 Aligned_cols=139 Identities=13% Similarity=0.143 Sum_probs=97.5
Q ss_pred CeEEEeecCChh--HHHHHHHHHHHhcCCCCeEEEEEEecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 024855 111 DIIYVAVGKSQS--SMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKF 188 (261)
Q Consensus 111 kkILVaVDgSe~--S~~AL~~Al~~A~~~ga~L~LLHVv~~~~~~p~~~g~~~~~~~~~e~~e~~~~~~~e~~~~~Lek~ 188 (261)
++||||+|+|+. +.+|++||+.+|+..+++|++|||+++...+.. .+.. .. .. ....++..++..+.++++
T Consensus 2 k~ILv~vD~s~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~-~~~~----~~-~~-~~~~~~~~~~~~~~l~~~ 74 (143)
T 3fdx_A 2 NAILVPIDISDKEFTERIISHVESEARIDDAEVHFLTVIPSLPYYAS-LGMA----YT-AE-LPGMDELREGSETQLKEI 74 (143)
T ss_dssp CEEEEECCTTCSSCCTTHHHHHHHHHHHHTCEEEEEEEECC-----------------------CHHHHHHHHHHHHHHH
T ss_pred CEEEEEecCChHhhHHHHHHHHHHHHHhcCCeEEEEEEecCCccccc-cccc----cc-ch-hhhHHHHHHHHHHHHHHH
Confidence 799999999999 999999999999989999999999987542211 1100 00 00 111122223333334443
Q ss_pred HHHhhcCCCcEEEEEEEcCChHHHHHHhhhhCCCcEEEECCCCCCcccccccceeccHHHHHhccCCcceeeC
Q 024855 189 LDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTTKSSLRFHFHSINFNGIGTLILFYFSILLFCF 261 (261)
Q Consensus 189 ~~~~~~~gV~ve~~vieGd~~aeaIv~~A~e~~aDLIVmGsr~sgl~~~~r~l~lGSVA~~Vlr~A~ipv~~~ 261 (261)
.+.+...+++++..+..|+ +++.|+++|+++++||||||+|++++.+ +++||++++|+++++||||.+
T Consensus 75 ~~~~~~~~~~v~~~~~~g~-~~~~I~~~a~~~~~dliV~G~~~~~~~~----~~~Gs~~~~v~~~~~~pVlvv 142 (143)
T 3fdx_A 75 AKKFSIPEDRMHFHVAEGS-PKDKILALAKSLPADLVIIASHRPDITT----YLLGSNAAAVVRHAECSVLVV 142 (143)
T ss_dssp HTTSCCCGGGEEEEEEESC-HHHHHHHHHHHTTCSEEEEESSCTTCCS----CSSCHHHHHHHHHCSSEEEEE
T ss_pred HHHcCCCCCceEEEEEecC-hHHHHHHHHHHhCCCEEEEeCCCCCCee----eeeccHHHHHHHhCCCCEEEe
Confidence 3333223345787877775 5899999999999999999999766655 678999999999999999963
No 10
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=99.90 E-value=1.1e-23 Score=167.75 Aligned_cols=133 Identities=17% Similarity=0.147 Sum_probs=100.5
Q ss_pred CCeEEEeecCChhHHHHHHHHHHHhcCCCCeEEEEEEecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 024855 110 EDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFL 189 (261)
Q Consensus 110 ~kkILVaVDgSe~S~~AL~~Al~~A~~~ga~L~LLHVv~~~~~~p~~~g~~~~~~~~~e~~e~~~~~~~e~~~~~Lek~~ 189 (261)
+++||||+|+|+.+.+|++||+.+|+..+++|++|||+++... . ...+ .+ +++.++.++++++.|+++.
T Consensus 2 ~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~-~--~~~~-----~~---~~~~~~~~~~~~~~l~~~~ 70 (137)
T 2z08_A 2 FKTILLAYDGSEHARRAAEVAKAEAEAHGARLIVVHAYEPVPD-Y--LGEP-----FF---EEALRRRLERAEGVLEEAR 70 (137)
T ss_dssp CSEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEECC-------------------------CHHHHHHHHHHHHHH
T ss_pred cceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEecCCCc-c--cccc-----ch---HHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999988999999999975321 0 1100 01 1222334456666777765
Q ss_pred HHhhcCCC-cEEEEEEEcCChHHHHHHhhhhCCCcEEEECCCC-CCcccccccceeccHHHHHhccCCcceeeC
Q 024855 190 DTCSQSKV-MVDTVLIESDLVAKAILDLIPVLNIRKLVVGTTK-SSLRFHFHSINFNGIGTLILFYFSILLFCF 261 (261)
Q Consensus 190 ~~~~~~gV-~ve~~vieGd~~aeaIv~~A~e~~aDLIVmGsr~-sgl~~~~r~l~lGSVA~~Vlr~A~ipv~~~ 261 (261)
+. .|+ +++..+..|+ +++.|+++|+++++||||||+|+ +++.+ +++||++++|+++++||||.+
T Consensus 71 ~~---~g~~~~~~~~~~g~-~~~~I~~~a~~~~~dliV~G~~~~~~~~~----~~~Gs~~~~vl~~~~~pVlvv 136 (137)
T 2z08_A 71 AL---TGVPKEDALLLEGV-PAEAILQAARAEKADLIVMGTRGLGALGS----LFLGSQSQRVVAEAPCPVLLV 136 (137)
T ss_dssp HH---HCCCGGGEEEEESS-HHHHHHHHHHHTTCSEEEEESSCTTCCSC----SSSCHHHHHHHHHCSSCEEEE
T ss_pred HH---cCCCccEEEEEecC-HHHHHHHHHHHcCCCEEEECCCCCchhhh----hhhccHHHHHHhcCCCCEEEe
Confidence 54 467 7776767775 68999999999999999999995 55555 678999999999999999963
No 11
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=99.89 E-value=7.3e-23 Score=168.18 Aligned_cols=129 Identities=15% Similarity=0.201 Sum_probs=105.6
Q ss_pred CCCeEEEeecC-ChhHHHHHHHHHHHhcCCCCeEEEEEEecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 024855 109 EEDIIYVAVGK-SQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQK 187 (261)
Q Consensus 109 ~~kkILVaVDg-Se~S~~AL~~Al~~A~~~ga~L~LLHVv~~~~~~p~~~g~~~~~~~~~e~~e~~~~~~~e~~~~~Lek 187 (261)
.|++||||+|+ |+.+.+|++||+.+|+..+++|++|||++.... .. +..++++++.+++
T Consensus 23 m~~~ILv~vD~~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~------------~~--------~~~~~~~~~~l~~ 82 (155)
T 3dlo_A 23 IYMPIVVAVDKKSDRAERVLRFAAEEARLRGVPVYVVHSLPGGGR------------TK--------DEDIIEAKETLSW 82 (155)
T ss_dssp CCCCEEEECCSSSHHHHHHHHHHHHHHHHHTCCEEEEEEECCSTT------------SC--------HHHHHHHHHHHHH
T ss_pred ccCeEEEEECCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEcCCCc------------cc--------HHHHHHHHHHHHH
Confidence 57999999999 999999999999999988999999999875320 01 1233456677788
Q ss_pred HHHHhhcCCCcEEEEE-EEcCChHHHHHHhhhhCCCcEEEECCC-CCCcccccccceeccHHHHHhccCCcceeeC
Q 024855 188 FLDTCSQSKVMVDTVL-IESDLVAKAILDLIPVLNIRKLVVGTT-KSSLRFHFHSINFNGIGTLILFYFSILLFCF 261 (261)
Q Consensus 188 ~~~~~~~~gV~ve~~v-ieGd~~aeaIv~~A~e~~aDLIVmGsr-~sgl~~~~r~l~lGSVA~~Vlr~A~ipv~~~ 261 (261)
+.+.+.+.+++++..+ +..++++++|+++|+++++||||||++ ++++.+ +++||++++|+++++||||.+
T Consensus 83 ~~~~~~~~g~~~~~~~~v~~G~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~----~~lGSv~~~vl~~a~~PVLvV 154 (155)
T 3dlo_A 83 AVSIIRKEGAEGEEHLLVRGKEPPDDIVDFADEVDAIAIVIGIRKRSPTGK----LIFGSVARDVILKANKPVICI 154 (155)
T ss_dssp HHHHHHHTTCCEEEEEEESSSCHHHHHHHHHHHTTCSEEEEECCEECTTSC----EECCHHHHHHHHHCSSCEEEE
T ss_pred HHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHcCCCEEEECCCCCCCCCC----EEeccHHHHHHHhCCCCEEEe
Confidence 8888888888887643 344456899999999999999999999 555555 778999999999999999964
No 12
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=99.89 E-value=2.4e-23 Score=167.63 Aligned_cols=139 Identities=18% Similarity=0.200 Sum_probs=96.2
Q ss_pred CCCeEEEeecCChhHHHHHHHHHHHhcCCCCeEEEEEEecCCCCCCCCCC-CCCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 024855 109 EEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLG-KLPRNQVNPEQLETFMAQETGKRRQLLQK 187 (261)
Q Consensus 109 ~~kkILVaVDgSe~S~~AL~~Al~~A~~~ga~L~LLHVv~~~~~~p~~~g-~~~~~~~~~e~~e~~~~~~~e~~~~~Lek 187 (261)
.+++||||+|+|+.+.+|++||+.+|++.+++|++|||+++.......++ ..+.. . +++.++.++++++.|++
T Consensus 5 ~~~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~l~~ 78 (150)
T 3tnj_A 5 VYHHILLAVDFSSEDSQVVQKVRNLASQIGARLSLIHVLDNIPMPDTPYGTAIPLD-T-----ETTYDAMLDVEKQKLSQ 78 (150)
T ss_dssp CCSEEEEECCCSTTHHHHHHHHHHHHHHHTCEEEEEEEEC--------CTTCCCSS-S-----CCCHHHHHHHHHHHHHH
T ss_pred ccceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEEcCccccccccccccCcC-H-----HHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999998999999999986532100111 11110 0 11223344556666666
Q ss_pred HHHHhhcCCCc-EEEEEEEcCChHHHHHHhhhhCCCcEEEECCCCCCcccccccceeccHHHHHhccCCcceeeC
Q 024855 188 FLDTCSQSKVM-VDTVLIESDLVAKAILDLIPVLNIRKLVVGTTKSSLRFHFHSINFNGIGTLILFYFSILLFCF 261 (261)
Q Consensus 188 ~~~~~~~~gV~-ve~~vieGd~~aeaIv~~A~e~~aDLIVmGsr~sgl~~~~r~l~lGSVA~~Vlr~A~ipv~~~ 261 (261)
+.+.+ +++ ++..+..|+ ++++|+++|+++++||||||+|+.+.. + +++||++++|+++++||||.+
T Consensus 79 ~~~~~---~~~~~~~~~~~g~-~~~~I~~~a~~~~~dliV~G~~~~~~~---~-~~~Gs~~~~vl~~~~~pVlvv 145 (150)
T 3tnj_A 79 IGNTL---GIDPAHRWLVWGE-PREEIIRIAEQENVDLIVVGSHGRHGL---A-LLLGSTANSVLHYAKCDVLAV 145 (150)
T ss_dssp HHHHH---TCCGGGEEEEESC-HHHHHHHHHHHTTCSEEEEEEC------------CCCHHHHHHHHCSSEEEEE
T ss_pred HHHHc---CCCcceEEEecCC-HHHHHHHHHHHcCCCEEEEecCCCCCc---C-eEecchHHHHHHhCCCCEEEE
Confidence 65544 555 355666665 589999999999999999999954432 2 567999999999999999963
No 13
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=99.85 E-value=4e-21 Score=171.41 Aligned_cols=146 Identities=14% Similarity=0.151 Sum_probs=108.9
Q ss_pred CCCccccccccccceeeecccCCCCCCCCCeEEEeecCChh-------HHHHHHHHHHHhcCCCCeEEEEEEecCCCCCC
Q 024855 82 PMPLAPIKEEIESSFFSFDVANGNGTQEEDIIYVAVGKSQS-------SMDALSWTLRHAVNPSTLIFLIHVFPQVKFVP 154 (261)
Q Consensus 82 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~kkILVaVDgSe~-------S~~AL~~Al~~A~~~ga~L~LLHVv~~~~~~p 154 (261)
+.||+.+++..+ + ++++||||+|+|+. +.+|++||+.+|+..+++|++|||+++....
T Consensus 120 ~~PVlvv~~~~~---~-----------~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~- 184 (290)
T 3mt0_A 120 PCPVLMTKTARP---W-----------TGGKILAAVDVGNNDGEHRSLHAGIISHAYDIAGLAKATLHVISAHPSPMLS- 184 (290)
T ss_dssp SSCEEEECCCSC---S-----------TTCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEC------
T ss_pred CCCEEEecCCCC---C-----------CCCeEEEEECCCCcchhhhHHHHHHHHHHHHHHHHcCCeEEEEEEecCcccc-
Confidence 579999985443 1 57899999999998 9999999999999999999999999864321
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc-EEEEEEEcCChHHHHHHhhhhCCCcEEEECCC-CC
Q 024855 155 SPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFLDTCSQSKVM-VDTVLIESDLVAKAILDLIPVLNIRKLVVGTT-KS 232 (261)
Q Consensus 155 ~~~g~~~~~~~~~e~~e~~~~~~~e~~~~~Lek~~~~~~~~gV~-ve~~vieGd~~aeaIv~~A~e~~aDLIVmGsr-~s 232 (261)
.. .++ . .+.++.+++.++.++++.+.. |++ ++..+..|+ ++++|+++|+++++||||||+| ++
T Consensus 185 --~~-------~~~-~-~~~~~~~~~~~~~l~~~~~~~---g~~~~~~~v~~g~-~~~~I~~~a~~~~~dLiVmG~~g~~ 249 (290)
T 3mt0_A 185 --SA-------DPT-F-QLSETIEARYREACRTFQAEY---GFSDEQLHIEEGP-ADVLIPRTAQKLDAVVTVIGTVART 249 (290)
T ss_dssp -------------C-H-HHHHHHHHHHHHHHHHHHHHH---TCCTTTEEEEESC-HHHHHHHHHHHHTCSEEEEECCSSC
T ss_pred --cc-------Cch-h-HHHHHHHHHHHHHHHHHHHHc---CCCcceEEEeccC-HHHHHHHHHHhcCCCEEEECCCCCc
Confidence 00 011 1 233444455566666655444 553 445566675 6899999999999999999999 56
Q ss_pred CcccccccceeccHHHHHhccCCcceeeC
Q 024855 233 SLRFHFHSINFNGIGTLILFYFSILLFCF 261 (261)
Q Consensus 233 gl~~~~r~l~lGSVA~~Vlr~A~ipv~~~ 261 (261)
++.+ +++||++++|+++++||||++
T Consensus 250 ~~~~----~~~Gsv~~~vl~~~~~pVLvv 274 (290)
T 3mt0_A 250 GLSG----ALIGNTAEVVLDTLESDVLVL 274 (290)
T ss_dssp CGGG----CCSCHHHHHHHTTCSSEEEEE
T ss_pred CCcc----eecchHHHHHHhcCCCCEEEE
Confidence 6655 778999999999999999974
No 14
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=99.85 E-value=1e-21 Score=156.50 Aligned_cols=134 Identities=16% Similarity=0.147 Sum_probs=97.1
Q ss_pred CCeEEEeecCChhHHHHHHHHHHHhcCCCCeEEEEEEecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 024855 110 EDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFL 189 (261)
Q Consensus 110 ~kkILVaVDgSe~S~~AL~~Al~~A~~~ga~L~LLHVv~~~~~~p~~~g~~~~~~~~~e~~e~~~~~~~e~~~~~Lek~~ 189 (261)
+++||||+|+|+.+.+|++||+.+|+..+++|++|||+++.... ..+ + .....+.+.++.++++++.|+++.
T Consensus 2 ~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~--~~~-~-----~~~~~~~~~~~~~~~~~~~l~~~~ 73 (141)
T 1jmv_A 2 YKHILVAVDLSEESPILLKKAVGIAKRHDAKLSIIHVDVNFSDL--YTG-L-----IDVNMSSMQDRISTETQKALLDLA 73 (141)
T ss_dssp CSEEEEEECCSTTHHHHHHHHHHHHHHHTCEEEEEEEEECCGGG--CCC-C-----EEHHHHHHTTCCCCHHHHHHHHHH
T ss_pred CceEEEEecCchhhHHHHHHHHHHHHhcCCEEEEEEEecCchhh--hcc-c-----cccchHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999889999999999542110 001 0 111112222222344555566554
Q ss_pred HHhhcCCCcE-EEEEEEcCChHHHHHHhhhhCCCcEEEECCCCCCcccccccceeccHHHHHhccCCcceeeC
Q 024855 190 DTCSQSKVMV-DTVLIESDLVAKAILDLIPVLNIRKLVVGTTKSSLRFHFHSINFNGIGTLILFYFSILLFCF 261 (261)
Q Consensus 190 ~~~~~~gV~v-e~~vieGd~~aeaIv~~A~e~~aDLIVmGsr~sgl~~~~r~l~lGSVA~~Vlr~A~ipv~~~ 261 (261)
+. .|+++ +..+..|+ +++.|+++|+++++||||||+| .+..+ . +||++++|+++++||||.+
T Consensus 74 ~~---~~~~~~~~~~~~g~-~~~~I~~~a~~~~~dliV~G~~-~~~~~---~--lgs~~~~vl~~~~~pVlvv 136 (141)
T 1jmv_A 74 ES---VDYPISEKLSGSGD-LGQVLSDAIEQYDVDLLVTGHH-QDFWS---K--LMSSTRQVMNTIKIDMLVV 136 (141)
T ss_dssp HH---SSSCCCCEEEEEEC-HHHHHHHHHHHTTCCEEEEEEC-CCCHH---H--HHHHHHHHHTTCCSEEEEE
T ss_pred HH---cCCCceEEEEecCC-HHHHHHHHHHhcCCCEEEEeCC-Cchhh---h--hcchHHHHHhcCCCCEEEe
Confidence 43 46665 45555665 5899999999999999999999 66544 2 3899999999999999963
No 15
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=99.84 E-value=1.2e-20 Score=169.43 Aligned_cols=141 Identities=10% Similarity=0.073 Sum_probs=113.1
Q ss_pred CCCeEEEeecCChhHHHHHHHHHHHhcCCCCeEEEEEEecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 024855 109 EEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKF 188 (261)
Q Consensus 109 ~~kkILVaVDgSe~S~~AL~~Al~~A~~~ga~L~LLHVv~~~~~~p~~~g~~~~~~~~~e~~e~~~~~~~e~~~~~Lek~ 188 (261)
.+++||||+|+|+.+..|++||+.+|++.+++|++|||+++.... ..+ ....+..+.+.+...+++++.|+++
T Consensus 6 ~~k~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~--~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~ 78 (319)
T 3olq_A 6 KYQNLLVVIDPNQDDQPALRRAVYIVQRNGGRIKAFLPVYDLSYD--MTT-----LLSPDERNAMRKGVINQKTAWIKQQ 78 (319)
T ss_dssp CSCEEEEECCTTCSCCHHHHHHHHHHHHHCCEEEEEEEECCGGGG--CTT-----TSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccceEEEEECCCcccHHHHHHHHHHHHHcCCeEEEEEEecccchh--hcc-----ccChhhHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999998753211 011 1123444455556667778888888
Q ss_pred HHHhhcCCCcEEEEEEEcCChHHHHHHhhhhCCCcEEEECCCC-CCcccccccceeccHHHHHhccCCcceee
Q 024855 189 LDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTTK-SSLRFHFHSINFNGIGTLILFYFSILLFC 260 (261)
Q Consensus 189 ~~~~~~~gV~ve~~vieGd~~aeaIv~~A~e~~aDLIVmGsr~-sgl~~~~r~l~lGSVA~~Vlr~A~ipv~~ 260 (261)
.+.+...|++++..+...+.+++.|++++++.++||||||+++ +++.+ +++||++.+|+++++||||.
T Consensus 79 ~~~~~~~~v~~~~~~~~~g~~~~~i~~~a~~~~~DLiV~G~~g~~~~~~----~~~Gs~~~~vl~~~~~PVlv 147 (319)
T 3olq_A 79 ARYYLEAGIQIDIKVIWHNRPYEAIIEEVITDKHDLLIKMAHQHDKLGS----LIFTPLDWQLLRKCPAPVWM 147 (319)
T ss_dssp HHHHHHTTCCEEEEEEECSCHHHHHHHHHHHHTCSEEEEEEBCC--CCS----CBCCHHHHHHHHHCSSCEEE
T ss_pred HHHHhhcCCeEEEEEEecCChHHHHHHHHHhcCCCEEEEecCcCchhhc----ccccccHHHHHhcCCCCEEE
Confidence 8888888999998887344568999999999999999999995 55544 67899999999999999986
No 16
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=99.83 E-value=3.7e-20 Score=147.20 Aligned_cols=131 Identities=7% Similarity=0.035 Sum_probs=98.1
Q ss_pred CCCeEEEeecCChhHHHHHHHHHHHhcCCCCeEEEEEEe-cC-CCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHH
Q 024855 109 EEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVF-PQ-VKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQ 186 (261)
Q Consensus 109 ~~kkILVaVDgSe~S~~AL~~Al~~A~~~ga~L~LLHVv-~~-~~~~p~~~g~~~~~~~~~e~~e~~~~~~~e~~~~~Le 186 (261)
.+++||||+|+|+.+.+|++||+.+|+..+++|++|||+ +. +.........++. .. .+.++.++++++.|+
T Consensus 3 ~~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~---~~----~~~~~~~~~~~~~l~ 75 (138)
T 1q77_A 3 AMKVLLVLTDAYSDCEKAITYAVNFSEKLGAELDILAVLEDVYNLERANVTFGLPF---PP----EIKEESKKRIERRLR 75 (138)
T ss_dssp CCEEEEEEESTTCCCHHHHHHHHHHHTTTCCEEEEEEECHHHHHHHHHHHHHCCCC---CT----HHHHHHHHHHHHHHH
T ss_pred cccEEEEEccCCHhHHHHHHHHHHHHHHcCCeEEEEEEecccccccccccccCCCC---Ch----HHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999998 63 1000000001110 11 223344556667777
Q ss_pred HHHHH--hhcCCCcEEEEEEEcCChHHHHHHhhhhCCCcEEEECCCCCCcccccccceeccHHHHHhccCCcceeeC
Q 024855 187 KFLDT--CSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTTKSSLRFHFHSINFNGIGTLILFYFSILLFCF 261 (261)
Q Consensus 187 k~~~~--~~~~gV~ve~~vieGd~~aeaIv~~A~e~~aDLIVmGsr~sgl~~~~r~l~lGSVA~~Vlr~A~ipv~~~ 261 (261)
++ +. +...| +++..+..|+ +++.|+++|+++++||||||+|+. |++++|+++++||||++
T Consensus 76 ~~-~~~~~~~~~-~~~~~~~~g~-~~~~I~~~a~~~~~dliV~G~~g~------------sv~~~vl~~a~~PVlvv 137 (138)
T 1q77_A 76 EV-WEKLTGSTE-IPGVEYRIGP-LSEEVKKFVEGKGYELVVWACYPS------------AYLCKVIDGLNLASLIV 137 (138)
T ss_dssp HH-HHHHHSCCC-CCCEEEECSC-HHHHHHHHHTTSCCSEEEECSCCG------------GGTHHHHHHSSSEEEEC
T ss_pred HH-HHHhhccCC-cceEEEEcCC-HHHHHHHHHHhcCCCEEEEeCCCC------------chHHHHHHhCCCceEee
Confidence 77 66 35556 7777766665 689999999999999999999843 79999999999999975
No 17
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=99.83 E-value=3.7e-20 Score=166.55 Aligned_cols=136 Identities=15% Similarity=0.156 Sum_probs=105.6
Q ss_pred CCCeEEEeecCChhHHHHHHHHHHHhcCCCCeEEEEEEecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 024855 109 EEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKF 188 (261)
Q Consensus 109 ~~kkILVaVDgSe~S~~AL~~Al~~A~~~ga~L~LLHVv~~~~~~p~~~g~~~~~~~~~e~~e~~~~~~~e~~~~~Lek~ 188 (261)
.+++||||+|+|+.+..|++||+.+|++.+++|++|||+++.. ..+..+ .... ++.+..++.+++.++++
T Consensus 18 ~~~~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~-~~~~~~-----~~~~----~~~~~~~~~~~~~l~~~ 87 (309)
T 3cis_A 18 SSLGIIVGIDDSPAAQVAVRWAARDAELRKIPLTLVHAVSPEV-ATWLEV-----PLPP----GVLRWQQDHGRHLIDDA 87 (309)
T ss_dssp CTTEEEEECCSSHHHHHHHHHHHHHHHHHTCCEEEEEECCCCC-CCTTCC-----CCCH----HHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCHHHHHHHHHHHHHHHhcCCcEEEEEEecCcc-cccccC-----CCCc----hhhHHHHHHHHHHHHHH
Confidence 7899999999999999999999999998899999999987432 111111 1121 22334445666777777
Q ss_pred HHHhhcC-----CCcEEEEEEEcCChHHHHHHhhhhCCCcEEEECCCC-CCcccccccceeccHHHHHhccCCcceeeC
Q 024855 189 LDTCSQS-----KVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTTK-SSLRFHFHSINFNGIGTLILFYFSILLFCF 261 (261)
Q Consensus 189 ~~~~~~~-----gV~ve~~vieGd~~aeaIv~~A~e~~aDLIVmGsr~-sgl~~~~r~l~lGSVA~~Vlr~A~ipv~~~ 261 (261)
.+.++.. +++++..+..|+ +++.|+++++ ++||||||+++ +++.+ +++||++++|+++++||||.+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~g~-~~~~I~~~a~--~~DliV~G~~g~~~~~~----~~~Gs~~~~vl~~~~~PVlvv 159 (309)
T 3cis_A 88 LKVVEQASLRAGPPTVHSEIVPAA-AVPTLVDMSK--DAVLMVVGCLGSGRWPG----RLLGSVSSGLLRHAHCPVVII 159 (309)
T ss_dssp HHHHHHHCSSSCCSCEEEEEESSC-HHHHHHHHGG--GEEEEEEESSCTTCCTT----CCSCHHHHHHHHHCSSCEEEE
T ss_pred HHHHHHhcccCCCceEEEEEecCC-HHHHHHHHhc--CCCEEEECCCCCccccc----cccCcHHHHHHHhCCCCEEEE
Confidence 7766654 889988877775 5899999997 89999999994 55544 678999999999999999963
No 18
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=99.83 E-value=3.1e-20 Score=167.03 Aligned_cols=149 Identities=15% Similarity=0.197 Sum_probs=109.3
Q ss_pred CCCccccccccccceeeecccCCCCCCCCCeEEEeecCChhHHHHHHHHHHHhcCCCCeEEEEEEecCCCCCCCCCCCCC
Q 024855 82 PMPLAPIKEEIESSFFSFDVANGNGTQEEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLP 161 (261)
Q Consensus 82 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~kkILVaVDgSe~S~~AL~~Al~~A~~~ga~L~LLHVv~~~~~~p~~~g~~~ 161 (261)
+.||+.++....... ...+++||||+|+|+.+.+|++||+.+|+..+++|++|||+++.... + .+
T Consensus 153 ~~PVlvv~~~~~~~~----------~~~~~~Ilv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~----~-~~ 217 (309)
T 3cis_A 153 HCPVVIIHDEDSVMP----------HPQQAPVLVGVDGSSASELATAIAFDEASRRNVDLVALHAWSDVDVS----E-WP 217 (309)
T ss_dssp SSCEEEECTTCCCSC----------SSCCCCEEEECCSSHHHHHHHHHHHHHHHHTTCCEEEEEESCSSCCT----T-CS
T ss_pred CCCEEEEcCCcccCC----------CCCCCeEEEEeCCChHHHHHHHHHHHHHHhcCCEEEEEEEeeccccc----C-CC
Confidence 578998886643111 12578999999999999999999999999889999999998754321 0 11
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhc--CCCcEEEEEEEcCChHHHHHHhhhhCCCcEEEECCC-CCCccccc
Q 024855 162 RNQVNPEQLETFMAQETGKRRQLLQKFLDTCSQ--SKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTT-KSSLRFHF 238 (261)
Q Consensus 162 ~~~~~~e~~e~~~~~~~e~~~~~Lek~~~~~~~--~gV~ve~~vieGd~~aeaIv~~A~e~~aDLIVmGsr-~sgl~~~~ 238 (261)
... .+++. ++.++.++++.+.+.+ .+++++..+..|+ ++++|+++++ ++||||||++ ++++.+
T Consensus 218 --~~~---~~~~~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~-~~~~I~~~a~--~adliV~G~~~~~~~~~-- 283 (309)
T 3cis_A 218 --GID---WPATQ----SMAEQVLAERLAGWQERYPNVAITRVVVRDQ-PARQLVQRSE--EAQLVVVGSRGRGGYAG-- 283 (309)
T ss_dssp --SCC---HHHHH----HHHHHHHHHHHTTHHHHCTTSCEEEEEESSC-HHHHHHHHHT--TCSEEEEESSCSSCCTT--
T ss_pred --ccc---HHHHH----HHHHHHHHHHHHHHHhhCCCCcEEEEEEcCC-HHHHHHHhhC--CCCEEEECCCCCCCccc--
Confidence 111 12222 3334445554444433 5788888777665 6899999998 8999999999 455555
Q ss_pred ccceeccHHHHHhccCCcceeeC
Q 024855 239 HSINFNGIGTLILFYFSILLFCF 261 (261)
Q Consensus 239 r~l~lGSVA~~Vlr~A~ipv~~~ 261 (261)
+++||++++|+++++||||++
T Consensus 284 --~l~Gsv~~~vl~~~~~pVlvv 304 (309)
T 3cis_A 284 --MLVGSVGETVAQLARTPVIVA 304 (309)
T ss_dssp --CSSCHHHHHHHHHCSSCEEEE
T ss_pred --cccCcHHHHHHhcCCCCEEEe
Confidence 678999999999999999974
No 19
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=99.83 E-value=2.6e-20 Score=167.28 Aligned_cols=151 Identities=15% Similarity=0.146 Sum_probs=112.6
Q ss_pred CCCccccccccccceeeecccCCCCCCCCCeEEEeecCCh-------hHHHHHHHHHHHhcCC--CCeEEEEEEecCCCC
Q 024855 82 PMPLAPIKEEIESSFFSFDVANGNGTQEEDIIYVAVGKSQ-------SSMDALSWTLRHAVNP--STLIFLIHVFPQVKF 152 (261)
Q Consensus 82 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~kkILVaVDgSe-------~S~~AL~~Al~~A~~~--ga~L~LLHVv~~~~~ 152 (261)
+.||+.+++... ..+++||||+|+|+ .+.+|+++|+.+|+.. +++|++|||++....
T Consensus 142 ~~PVlvv~~~~~--------------~~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~~~a~l~ll~v~~~~~~ 207 (319)
T 3olq_A 142 PAPVWMVKDKEW--------------PEYGTIVVAANLSNEESYHDALNLKLIELTNDLSHRIQKDPDVHLLSAYPVAPI 207 (319)
T ss_dssp SSCEEEEESSCC--------------CTTCEEEEECCCSCCSTHHHHHHHHHHHHHHHHHHHHCSSCCEEEEEEECCCSC
T ss_pred CCCEEEecCccc--------------ccCCeEEEEECCCCcchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCcch
Confidence 578888875431 15789999999999 5799999999999977 999999999987542
Q ss_pred CCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-cEEEEEEEcCChHHHHHHhhhhCCCcEEEECCC-
Q 024855 153 VPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFLDTCSQSKV-MVDTVLIESDLVAKAILDLIPVLNIRKLVVGTT- 230 (261)
Q Consensus 153 ~p~~~g~~~~~~~~~e~~e~~~~~~~e~~~~~Lek~~~~~~~~gV-~ve~~vieGd~~aeaIv~~A~e~~aDLIVmGsr- 230 (261)
.. ....+ ....+.+.++.++++++.++++.+.+ ++ .++..+..|+ ++++|+++|+++++||||||+|
T Consensus 208 ~~--~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~v~~g~-~~~~I~~~a~~~~~dLiV~G~~g 276 (319)
T 3olq_A 208 NI--AIELP-----DFDPNLYNNALRGQHLIAMKELRQKF---SIPEEKTHVKEGL-PEQVIPQVCEELNAGIVVLGILG 276 (319)
T ss_dssp SC--CTTCT-----TCCHHHHHHHHHHHHHHHHHHHHHHT---TCCGGGEEEEESC-HHHHHHHHHHHTTEEEEEEECCS
T ss_pred hh--hccCC-----cccHHHHHHHHHHHHHHHHHHHHHHh---CCCcccEEEecCC-cHHHHHHHHHHhCCCEEEEeccC
Confidence 11 01111 11223455556666677777765443 44 2445566665 5899999999999999999999
Q ss_pred CCCcccccccceeccHHHHHhccCCcceeeC
Q 024855 231 KSSLRFHFHSINFNGIGTLILFYFSILLFCF 261 (261)
Q Consensus 231 ~sgl~~~~r~l~lGSVA~~Vlr~A~ipv~~~ 261 (261)
++++.+ +++||++++|+++++||||++
T Consensus 277 ~~~~~~----~~~Gsv~~~vl~~~~~pVLvv 303 (319)
T 3olq_A 277 RTGLSA----AFLGNTAEQLIDHIKCDLLAI 303 (319)
T ss_dssp CCSTHH----HHHHHHHHHHHTTCCSEEEEE
T ss_pred ccCCcc----ccccHHHHHHHhhCCCCEEEE
Confidence 566655 678999999999999999974
No 20
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=99.82 E-value=2.8e-20 Score=163.44 Aligned_cols=141 Identities=17% Similarity=0.108 Sum_probs=107.1
Q ss_pred CeEEEeecCChhHHHHHHHHHHHhcCCCCeEEEEEEecCCCCC-CCCCCCCCCCCCChh--HH-HHHHHHHHHHHHHHHH
Q 024855 111 DIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFV-PSPLGKLPRNQVNPE--QL-ETFMAQETGKRRQLLQ 186 (261)
Q Consensus 111 kkILVaVDgSe~S~~AL~~Al~~A~~~ga~L~LLHVv~~~~~~-p~~~g~~~~~~~~~e--~~-e~~~~~~~e~~~~~Le 186 (261)
++||||+|+|+.+.+|++||+.+|++.+++|+++||+++.... ....+ .+. ...+ .+ +.+.+..++.+++.++
T Consensus 1 k~ILv~vD~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~l~ 77 (268)
T 3ab8_A 1 MRILLATDGSPQARGAEALAEWLAYKLSAPLTVLFVVDTRLARIPELLD-FGA--LTVPVPVLRTELERALALRGEAVLE 77 (268)
T ss_dssp CCEEEECCSCGGGHHHHHHHHHHHHHHTCCEEEEEEEEHHHHTHHHHC----------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEcCCCHHHHHHHHHHHHHHHHhCCcEEEEEEeccCCcccccccC-chH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999889999999998753210 00001 000 0001 01 1113445567788899
Q ss_pred HHHHHhhcCCCcEEEEEEEcCChHHHHHHhhhhCCCcEEEECCCC-C-CcccccccceeccHHHHHhccCCcceeeC
Q 024855 187 KFLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTTK-S-SLRFHFHSINFNGIGTLILFYFSILLFCF 261 (261)
Q Consensus 187 k~~~~~~~~gV~ve~~vieGd~~aeaIv~~A~e~~aDLIVmGsr~-s-gl~~~~r~l~lGSVA~~Vlr~A~ipv~~~ 261 (261)
++.+.+...|++++..+..|+ +++.|+++ +.++||||||+|+ + ++.+ +++||++++|+++++||||.+
T Consensus 78 ~~~~~~~~~g~~~~~~~~~g~-~~~~I~~~--~~~~dliV~G~~g~~~~~~~----~~~Gs~~~~v~~~a~~PVlvv 147 (268)
T 3ab8_A 78 RVRQSALAAGVAVEAVLEEGV-PHEAILRR--ARAADLLVLGRSGEAHGDGF----GGLGSTADRVLRASPVPVLLA 147 (268)
T ss_dssp HHHHHHHHTTCCEEEEEEEEC-HHHHHHHH--HTTCSEEEEESSCTTSCTTC----CSCCHHHHHHHHHCSSCEEEE
T ss_pred HHHHHHHhCCCCeEEEEecCC-HHHHHHhh--ccCCCEEEEeccCCCccccc----cccchhHHHHHHhCCCCEEEE
Confidence 998888888999998888776 58999999 8899999999995 5 5555 668999999999999999863
No 21
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=99.81 E-value=6.4e-20 Score=163.67 Aligned_cols=134 Identities=16% Similarity=0.149 Sum_probs=107.0
Q ss_pred CCCccccccccccceeeecccCCCCCCCCCeEEEeecCChhHHHHHHHHHHHhcCCCCeEEEEEEecCCCCCCCCCCCCC
Q 024855 82 PMPLAPIKEEIESSFFSFDVANGNGTQEEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLP 161 (261)
Q Consensus 82 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~kkILVaVDgSe~S~~AL~~Al~~A~~~ga~L~LLHVv~~~~~~p~~~g~~~ 161 (261)
+.||+.+++..+ | ...+++||||+|+|+.+.+|+++|+.+++..+++|++|||.++..
T Consensus 154 ~~PVlvv~~~~~---~---------~~~~~~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~---------- 211 (294)
T 3loq_A 154 KVPVYIFKHDMV---V---------NSLFDRVLVAYDFSKWADRALEYAKFVVKKTGGELHIIHVSEDGD---------- 211 (294)
T ss_dssp SSCEEEECCCTT---T---------TCTTSEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEECSSSC----------
T ss_pred CCCEEEecCccc---c---------CccCCEEEEEECCCHHHHHHHHHHHHHhhhcCCEEEEEEEccCch----------
Confidence 578888886543 0 126789999999999999999999999998899999999976421
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEEEEcCChHHHHHHhhhhCCCcEEEECCCC-CCccccccc
Q 024855 162 RNQVNPEQLETFMAQETGKRRQLLQKFLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTTK-SSLRFHFHS 240 (261)
Q Consensus 162 ~~~~~~e~~e~~~~~~~e~~~~~Lek~~~~~~~~gV~ve~~vieGd~~aeaIv~~A~e~~aDLIVmGsr~-sgl~~~~r~ 240 (261)
.++.++++.+.+++.+++++..+..| +++++|++++++.++||||||+++ +++.+
T Consensus 212 -------------------~~~~l~~~~~~l~~~~~~~~~~~~~g-~~~~~I~~~a~~~~~dLlV~G~~~~~~~~~---- 267 (294)
T 3loq_A 212 -------------------KTADLRVMEEVIGAEGIEVHVHIESG-TPHKAILAKREEINATTIFMGSRGAGSVMT---- 267 (294)
T ss_dssp -------------------CHHHHHHHHHHHHHTTCCEEEEEECS-CHHHHHHHHHHHTTCSEEEEECCCCSCHHH----
T ss_pred -------------------HHHHHHHHHHHHHHcCCcEEEEEecC-CHHHHHHHHHHhcCcCEEEEeCCCCCCccc----
Confidence 01123344444555688888877766 568999999999999999999994 55554
Q ss_pred ceeccHHHHHhccCCcceeeC
Q 024855 241 INFNGIGTLILFYFSILLFCF 261 (261)
Q Consensus 241 l~lGSVA~~Vlr~A~ipv~~~ 261 (261)
+++||++++|+++++||||++
T Consensus 268 ~~~Gs~~~~vl~~~~~pvLvv 288 (294)
T 3loq_A 268 MILGSTSESVIRRSPVPVFVC 288 (294)
T ss_dssp HHHHCHHHHHHHHCSSCEEEE
T ss_pred eeeCcHHHHHHhcCCCCEEEE
Confidence 678999999999999999974
No 22
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=99.81 E-value=2.5e-20 Score=166.29 Aligned_cols=137 Identities=12% Similarity=0.181 Sum_probs=109.0
Q ss_pred CCCeEEEeecCChhHHHHHHHHHHHhcCCCCeEEEEEEecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 024855 109 EEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKF 188 (261)
Q Consensus 109 ~~kkILVaVDgSe~S~~AL~~Al~~A~~~ga~L~LLHVv~~~~~~p~~~g~~~~~~~~~e~~e~~~~~~~e~~~~~Lek~ 188 (261)
.+++||||+|+|+.+.+|++||+.+|++.+++|++|||++.........+ . .. .++.+..++.+++.|+++
T Consensus 21 m~~~ILv~vD~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~-----~-~~---~~~~~~~~~~~~~~l~~~ 91 (294)
T 3loq_A 21 QSNAMLLPTDLSENSFKVLEYLGDFKKVGVEEIGVLFVINLTKLSTVSGG-----I-DI---DHYIDEMSEKAEEVLPEV 91 (294)
T ss_dssp TTCEEEEECCSCTGGGGGGGGHHHHHHTTCCEEEEECCEECTTC-----C-----C-CT---THHHHHHHHHHHHHHHHH
T ss_pred hhccEEEecCCCHHHHHHHHHHHHHHhhcCCEEEEEEEecCccccccccc-----c-cH---HHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999987542111101 1 11 233445566778888899
Q ss_pred HHHhhcCCCcEEE-EEE-EcCChHHHHHHhhhhCCCcEEEECCCC-CCcccccccceeccHHHHHhccCCcceeeC
Q 024855 189 LDTCSQSKVMVDT-VLI-ESDLVAKAILDLIPVLNIRKLVVGTTK-SSLRFHFHSINFNGIGTLILFYFSILLFCF 261 (261)
Q Consensus 189 ~~~~~~~gV~ve~-~vi-eGd~~aeaIv~~A~e~~aDLIVmGsr~-sgl~~~~r~l~lGSVA~~Vlr~A~ipv~~~ 261 (261)
.+.+...|++++. .+. .|+ +++.| ++++.++||||||+++ +++.+ +++||++++|+++++||||.+
T Consensus 92 ~~~~~~~g~~~~~~~v~~~g~-~~~~I--~a~~~~~DliV~G~~g~~~~~~----~~~Gs~~~~vl~~~~~PVlvv 160 (294)
T 3loq_A 92 AQKIEAAGIKAEVIKPFPAGD-PVVEI--IKASENYSFIAMGSRGASKFKK----ILLGSVSEGVLHDSKVPVYIF 160 (294)
T ss_dssp HHHHHHTTCEEEECSSCCEEC-HHHHH--HHHHTTSSEEEEECCCCCHHHH----HHHCCHHHHHHHHCSSCEEEE
T ss_pred HHHHHHcCCCcceeEeeccCC-hhHhe--eeccCCCCEEEEcCCCCccccc----eeeccHHHHHHhcCCCCEEEe
Confidence 8888888999987 666 666 57999 9999999999999995 44444 667999999999999999863
No 23
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=99.79 E-value=5.4e-19 Score=155.20 Aligned_cols=127 Identities=15% Similarity=0.098 Sum_probs=101.7
Q ss_pred CCCccccccccccceeeecccCCCCCCCCCeEEEeecCChhHHHHHHHHHHHhcCCCCeEEEEEEecCCCCCCCCCCCCC
Q 024855 82 PMPLAPIKEEIESSFFSFDVANGNGTQEEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLP 161 (261)
Q Consensus 82 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~kkILVaVDgSe~S~~AL~~Al~~A~~~ga~L~LLHVv~~~~~~p~~~g~~~ 161 (261)
+.||+.+++... ++++||||+|+|+.+.+|+++|..++...+++|+++||.++.
T Consensus 141 ~~PVlvv~~~~~---------------~~~~ilv~~d~s~~~~~al~~a~~la~~~~a~l~ll~v~~~~----------- 194 (268)
T 3ab8_A 141 PVPVLLAPGEPV---------------ELEGALLGYDASESAVRALHALAPLARALGLGVRVVSVHEDP----------- 194 (268)
T ss_dssp SSCEEEECSSCC---------------CCCEEEEECCSCHHHHHHHHHHHHHHHHHTCCEEEEEECSSH-----------
T ss_pred CCCEEEECCCCC---------------CCCEEEEEECCCHHHHHHHHHHHHhhhcCCCEEEEEEEcCcH-----------
Confidence 578888875433 568999999999999999999999998889999999996431
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEEEEcCChHHHHHHhhhhCCCcEEEECCCCCCcccccccc
Q 024855 162 RNQVNPEQLETFMAQETGKRRQLLQKFLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTTKSSLRFHFHSI 241 (261)
Q Consensus 162 ~~~~~~e~~e~~~~~~~e~~~~~Lek~~~~~~~~gV~ve~~vieGd~~aeaIv~~A~e~~aDLIVmGsr~sgl~~~~r~l 241 (261)
+ ..++.++++.+.+.+.|++++..+..|+ ++++|+++++++ ||||||+ ++.+ +
T Consensus 195 ------~-----------~~~~~l~~~~~~l~~~~~~~~~~~~~g~-~~~~i~~~a~~~--dliV~G~---~~~~----~ 247 (268)
T 3ab8_A 195 ------A-----------RAEAWALEAEAYLRDHGVEASALVLGGD-AADHLLRLQGPG--DLLALGA---PVRR----L 247 (268)
T ss_dssp ------H-----------HHHHHHHHHHHHHHHTTCCEEEEEECSC-HHHHHHHHCCTT--EEEEEEC---CCSC----C
T ss_pred ------H-----------HHHHHHHHHHHHHHHcCCceEEEEeCCC-hHHHHHHHHHhC--CEEEECC---cccc----c
Confidence 1 1123344555556667899888777665 689999999998 9999999 5554 6
Q ss_pred eeccHHHHHhccCCcceeeC
Q 024855 242 NFNGIGTLILFYFSILLFCF 261 (261)
Q Consensus 242 ~lGSVA~~Vlr~A~ipv~~~ 261 (261)
++||++++|+++++||||.+
T Consensus 248 ~~Gs~~~~vl~~~~~pvlvv 267 (268)
T 3ab8_A 248 VFGSTAERVIRNAQGPVLTA 267 (268)
T ss_dssp SSCCHHHHHHHHCSSCEEEE
T ss_pred EeccHHHHHHhcCCCCEEEe
Confidence 78999999999999999974
No 24
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=99.78 E-value=3.2e-19 Score=159.09 Aligned_cols=119 Identities=12% Similarity=-0.005 Sum_probs=97.9
Q ss_pred CCCeEEEeecCChhHHHHHHHHHHHhcCCCCeEEEEEEecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 024855 109 EEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKF 188 (261)
Q Consensus 109 ~~kkILVaVDgSe~S~~AL~~Al~~A~~~ga~L~LLHVv~~~~~~p~~~g~~~~~~~~~e~~e~~~~~~~e~~~~~Lek~ 188 (261)
.+++||||+|+|+.+..|++||+.+|++.+++|++|||+++. ..++.|+++
T Consensus 6 ~~~~ILv~~D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~-----------------------------~~~~~l~~~ 56 (290)
T 3mt0_A 6 AIRSILVVIEPDQLEGLALKRAQLIAGVTQSHLHLLVCEKRR-----------------------------DHSAALNDL 56 (290)
T ss_dssp TCCEEEEECCSSCSCCHHHHHHHHHHHHHCCEEEEEEECSSS-----------------------------CCHHHHHHH
T ss_pred hhceEEEEeCCCccchHHHHHHHHHHHhcCCeEEEEEeeCcH-----------------------------HHHHHHHHH
Confidence 579999999999999999999999999999999999997620 001123334
Q ss_pred HHHhhcCCCcEEEEEEEcCChHHHHHHhhhhCCCcEEEECCCC-CCcccccccceeccHHHHHhccCCcceee
Q 024855 189 LDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTTK-SSLRFHFHSINFNGIGTLILFYFSILLFC 260 (261)
Q Consensus 189 ~~~~~~~gV~ve~~vieGd~~aeaIv~~A~e~~aDLIVmGsr~-sgl~~~~r~l~lGSVA~~Vlr~A~ipv~~ 260 (261)
.+.+...|++++..+..++.+++.|++++++.++||||||+++ +++.+ +++||++.+|+++++||||.
T Consensus 57 ~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dliV~G~~~~~~~~~----~~~gs~~~~vl~~~~~PVlv 125 (290)
T 3mt0_A 57 AQELREEGYSVSTNQAWKDSLHQTIIAEQQAEGCGLIIKQHFPDNPLKK----AILTPDDWKLLRFAPCPVLM 125 (290)
T ss_dssp HHHHHHTTCCEEEEEECSSSHHHHHHHHHHHHTCSEEEEECCCSCTTST----TSCCHHHHHHHHHCSSCEEE
T ss_pred HHHHhhCCCeEEEEEEeCCCHHHHHHHHHHhcCCCEEEEecccCCchhh----cccCHHHHHHHhcCCCCEEE
Confidence 4444567899998877666679999999999999999999995 44544 67899999999999999986
No 25
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=94.86 E-value=0.17 Score=48.07 Aligned_cols=96 Identities=17% Similarity=0.186 Sum_probs=64.4
Q ss_pred CCCeEEEeecCChhHHHHHHHHHHHhcCCCCeEEEEEEecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 024855 109 EEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKF 188 (261)
Q Consensus 109 ~~kkILVaVDgSe~S~~AL~~Al~~A~~~ga~L~LLHVv~~~~~~p~~~g~~~~~~~~~e~~e~~~~~~~e~~~~~Lek~ 188 (261)
+.++|+||+.|...|.-++.++.++....+.+++++||..... | ++. ....+.+
T Consensus 17 ~~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~~~v~avhvdhglr------g--------~~s------------~~~~~~v 70 (464)
T 3a2k_A 17 EGAAVIVGVSGGPDSLALLHVFLSLRDEWKLQVIAAHVDHMFR------G--------RES------------EEEMEFV 70 (464)
T ss_dssp CSSBEEEECCSSHHHHHHHHHHHHHHHTTTCBCEEEEEECTTC------T--------HHH------------HHHHHHH
T ss_pred CCCEEEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEEEEECCCC------c--------ccc------------HHHHHHH
Confidence 5679999999999999999888887766788999999953210 0 110 0112234
Q ss_pred HHHhhcCCCcEEEEEEE--------cCCh--------HHHHHHhhhhCCCcEEEECCC
Q 024855 189 LDTCSQSKVMVDTVLIE--------SDLV--------AKAILDLIPVLNIRKLVVGTT 230 (261)
Q Consensus 189 ~~~~~~~gV~ve~~vie--------Gd~~--------aeaIv~~A~e~~aDLIVmGsr 230 (261)
.+.|+..|+++...-+. +..+ ...+.++|++++++.|+.|.|
T Consensus 71 ~~~~~~lgi~~~v~~~~~~~~~~~~~~~~e~~aR~~Ry~~l~~~a~~~g~~~IatgH~ 128 (464)
T 3a2k_A 71 KRFCVERRILCETAQIDVPAFQRSAGLGAQEAARICRYRFFAELMEKHQAGYVAVGHH 128 (464)
T ss_dssp HHHHHHTTCEEEEEECCCHHHHTTTTCCSHHHHHHHHHHHHHHHHHTTTCCEEECCCC
T ss_pred HHHHHHcCCcEEEEEechhhhhhccCCCHHHHHHHHHHHHHHHHHHHcCcCEEEEeCC
Confidence 44566678876644322 1111 245567888999999999998
No 26
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=94.23 E-value=0.23 Score=44.59 Aligned_cols=95 Identities=9% Similarity=-0.010 Sum_probs=60.4
Q ss_pred CCCeEEEeecCChhHHHHHHHHHHHhcCCCCe-EEEEEEecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 024855 109 EEDIIYVAVGKSQSSMDALSWTLRHAVNPSTL-IFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQK 187 (261)
Q Consensus 109 ~~kkILVaVDgSe~S~~AL~~Al~~A~~~ga~-L~LLHVv~~~~~~p~~~g~~~~~~~~~e~~e~~~~~~~e~~~~~Lek 187 (261)
+.++|+|++.|...|.-++.++.+.....+.+ +.++||-... .++. . + ..+.
T Consensus 23 ~~~~vlva~SGG~DS~~Ll~ll~~~~~~~g~~~v~av~vd~g~---------------r~~s-~----~-------~~~~ 75 (317)
T 1wy5_A 23 GERRVLIAFSGGVDSVVLTDVLLKLKNYFSLKEVALAHFNHML---------------RESA-E----R-------DEEF 75 (317)
T ss_dssp SCCEEEEECCSSHHHHHHHHHHHHSTTTTTCSEEEEEEEECCS---------------STHH-H----H-------HHHH
T ss_pred CCCEEEEEecchHHHHHHHHHHHHHHHHcCCCEEEEEEEECCC---------------Cccc-H----H-------HHHH
Confidence 56799999999999999998877665555777 9999994221 0000 0 0 1122
Q ss_pred HHHHhhcCCCcEEEEEEE--------cCCh--------HHHHHHhhhhCCCcEEEECCC
Q 024855 188 FLDTCSQSKVMVDTVLIE--------SDLV--------AKAILDLIPVLNIRKLVVGTT 230 (261)
Q Consensus 188 ~~~~~~~~gV~ve~~vie--------Gd~~--------aeaIv~~A~e~~aDLIVmGsr 230 (261)
+.+.|+..|+++...-.. +..+ ...+.+++++++++.|+.|.|
T Consensus 76 v~~~a~~lgi~~~v~~~~~~~~~~~~~~~~e~~ar~~Ry~~l~~~a~~~g~~~i~~Gh~ 134 (317)
T 1wy5_A 76 CKEFAKERNMKIFVGKEDVRAFAKENRMSLEEAGRFLRYKFLKEILESEGFDCIATAHH 134 (317)
T ss_dssp HHHHHHHHTCCEEEEECCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTTCSEEECCCC
T ss_pred HHHHHHHcCCcEEEEEEechhhhccCCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeCc
Confidence 233455557776543221 1111 124566788999999999998
No 27
>2iel_A Hypothetical protein TT0030; TT0030,thermus thermophilus, structural genomics, PSI, protein structure initiative; 1.60A {Thermus thermophilus} SCOP: c.26.2.4
Probab=94.04 E-value=0.13 Score=41.45 Aligned_cols=79 Identities=10% Similarity=-0.026 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCcEE-EEEEEcCChHHHHHHhhhhCC--CcEEEECCCCCCcccccccceeccHHHHHhc
Q 024855 176 QETGKRRQLLQKFLDTCSQSKVMVD-TVLIESDLVAKAILDLIPVLN--IRKLVVGTTKSSLRFHFHSINFNGIGTLILF 252 (261)
Q Consensus 176 ~~~e~~~~~Lek~~~~~~~~gV~ve-~~vieGd~~aeaIv~~A~e~~--aDLIVmGsr~sgl~~~~r~l~lGSVA~~Vlr 252 (261)
+.++.+++.|+..++.++..|+.++ ..+...+| -.+|.+.+.+.+ +|-||+-+.-..... +|.--++++.-+
T Consensus 51 ~a~~~A~~~l~~sl~aL~~~G~~a~~G~v~d~~P-l~AL~~~v~~~~~~~deiIV~T~Ph~vs~----~fh~DwasrAr~ 125 (138)
T 2iel_A 51 EVRRRAEEEAAAAKRALEAQGIPVEEAKAGDISP-LLAIEEELLAHPGAYQGIVLSTLPPGLSR----WLRLDVHTQAER 125 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCCCSEEEEEESSH-HHHHHHHHHHSTTSCSEEEEEECCTTTCH----HHHTTHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcccccccCCCCh-HHHHHHHHHhcCCCCceEEEEcCCchHHH----HHhccHHHHHHh
Confidence 3445666777777777888899988 88888776 599999999999 999999999666655 334468888888
Q ss_pred cCCcceee
Q 024855 253 YFSILLFC 260 (261)
Q Consensus 253 ~A~ipv~~ 260 (261)
..+||+-
T Consensus 126 -~gvPVlh 132 (138)
T 2iel_A 126 -FGLPVIH 132 (138)
T ss_dssp -GSSCEEE
T ss_pred -cCCCEEE
Confidence 8999973
No 28
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=90.42 E-value=1.6 Score=40.95 Aligned_cols=39 Identities=23% Similarity=0.216 Sum_probs=33.6
Q ss_pred CCCeEEEeecCChhHHHHHHHHHHHhcC-CCCeEEEEEEe
Q 024855 109 EEDIIYVAVGKSQSSMDALSWTLRHAVN-PSTLIFLIHVF 147 (261)
Q Consensus 109 ~~kkILVaVDgSe~S~~AL~~Al~~A~~-~ga~L~LLHVv 147 (261)
+.++|+|++.|...|.-++.++.++... .+-+++++||.
T Consensus 12 ~~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~g~~v~avhvd 51 (433)
T 1ni5_A 12 TSRQILVAFSGGLDSTVLLHQLVQWRTENPGVALRAIHVH 51 (433)
T ss_dssp TCSEEEEECCSBHHHHHHHHHHHHHHTTSTTCEEEEEEEC
T ss_pred CCCEEEEEEcchHHHHHHHHHHHHHHHhcCCCeEEEEEEE
Confidence 5679999999999999999888777665 67899999994
No 29
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Probab=81.49 E-value=6.1 Score=35.64 Aligned_cols=38 Identities=13% Similarity=-0.052 Sum_probs=30.9
Q ss_pred CCeEEEeecCChhHHHHHHHHHHHhcCCCCeEEEEEEe
Q 024855 110 EDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVF 147 (261)
Q Consensus 110 ~kkILVaVDgSe~S~~AL~~Al~~A~~~ga~L~LLHVv 147 (261)
+.+|+|++.|.+.|.-.|..+.+.+...+..+.++|+-
T Consensus 46 ~~~ivVa~SGGkDS~vLL~Ll~~~~~~~~~~i~vv~vD 83 (325)
T 1zun_A 46 FDNPVMLYSIGKDSAVMLHLARKAFFPGKLPFPVMHVD 83 (325)
T ss_dssp CSSEEEECCSSHHHHHHHHHHHHHHTTSCCSSCEEEEC
T ss_pred CCCEEEEEcChHHHHHHHHHHHHhccccCCCEEEEEEE
Confidence 46899999999999999988887765335678889983
No 30
>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C* 3clt_C* 3clu_C*
Probab=80.94 E-value=0.98 Score=39.86 Aligned_cols=103 Identities=14% Similarity=0.118 Sum_probs=61.2
Q ss_pred EeecCChhHHHHHHHHHHHhcCCCC--eEEEEEEecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHh
Q 024855 115 VAVGKSQSSMDALSWTLRHAVNPST--LIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFLDTC 192 (261)
Q Consensus 115 VaVDgSe~S~~AL~~Al~~A~~~ga--~L~LLHVv~~~~~~p~~~g~~~~~~~~~e~~e~~~~~~~e~~~~~Lek~~~~~ 192 (261)
|+--.++.+..||+.|+++....+. +|++|.+=++ . .++.++++..
T Consensus 31 ~~~~lnp~d~~ale~A~~Lke~~g~~~~V~av~~G~~------------------~------------~~~~lr~ala-- 78 (264)
T 1o97_C 31 MMYDLNEWDDFSLEEAMKIKESSDTDVEVVVVSVGPD------------------R------------VDESLRKCLA-- 78 (264)
T ss_dssp EEEEECHHHHHHHHHHHHHHHHCSSCCEEEEEEESCG------------------G------------GHHHHHHHHH--
T ss_pred CCCccCHHHHHHHHHHHHHHHhcCCCceEEEEEeCch------------------h------------HHHHHHHHHh--
Confidence 3444588999999999998765565 8888876110 0 1112223322
Q ss_pred hcCCCcEEEEEEEc--------CChHHHHHHhhhhCCCcEEEECCCCCCcccccccceeccHHHHHhccCCccee
Q 024855 193 SQSKVMVDTVLIES--------DLVAKAILDLIPVLNIRKLVVGTTKSSLRFHFHSINFNGIGTLILFYFSILLF 259 (261)
Q Consensus 193 ~~~gV~ve~~vieG--------d~~aeaIv~~A~e~~aDLIVmGsr~sgl~~~~r~l~lGSVA~~Vlr~A~ipv~ 259 (261)
.|..-- +++.. ...+..|.+++++.++|+|++|....+.. .+.++.+|...-.+|.+
T Consensus 79 --~GaD~v-i~v~d~~~~~~~~~~~a~~La~~i~~~~~dlVl~G~~s~d~~-------~~~v~p~lA~~L~~~~v 143 (264)
T 1o97_C 79 --KGADRA-VRVWDDAAEGSDAIVVGRILTEVIKKEAPDMVFAGVQSSDQA-------YASTGISVASYLNWPHA 143 (264)
T ss_dssp --TTCSEE-EEECCGGGTTCCHHHHHHHHHHHHHHHCCSEEEEESCCTTTC-------CCCHHHHHHHHHTCCEE
T ss_pred --cCCCEE-EEEcCcccccCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCc-------hhhHHHHHHHHhCCCcc
Confidence 244322 22221 13456888899988999999999954422 13455555555555544
No 31
>1efv_B Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 PDB: 1t9g_S* 2a1u_B* 2a1t_S*
Probab=80.73 E-value=1.7 Score=38.10 Aligned_cols=100 Identities=11% Similarity=0.035 Sum_probs=59.8
Q ss_pred ecCChhHHHHHHHHHHHhcCCCC--eEEEEEEecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 024855 117 VGKSQSSMDALSWTLRHAVNPST--LIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFLDTCSQ 194 (261)
Q Consensus 117 VDgSe~S~~AL~~Al~~A~~~ga--~L~LLHVv~~~~~~p~~~g~~~~~~~~~e~~e~~~~~~~e~~~~~Lek~~~~~~~ 194 (261)
.-.++.+..||+.|+++... +. ++++|.+=++. .++.++++..+
T Consensus 36 ~~lnp~d~~Ale~A~~Lke~-g~~~~V~av~~G~~~------------------------------a~~~lr~ala~--- 81 (255)
T 1efv_B 36 HSMNPFCEIAVEEAVRLKEK-KLVKEVIAVSCGPAQ------------------------------CQETIRTALAM--- 81 (255)
T ss_dssp EEECHHHHHHHHHHHHHHHT-TSCSEEEEEEEESTT------------------------------HHHHHHHHHHH---
T ss_pred ccCCHHHHHHHHHHHHHHhc-CCCceEEEEEeCChh------------------------------HHHHHHHHHhc---
Confidence 33478899999999998765 65 88888762210 11122333222
Q ss_pred CCCcEEEEEEE-------c---CChHHHHHHhhhhCCCcEEEECCCCCCcccccccceeccHHHHHhccCCccee
Q 024855 195 SKVMVDTVLIE-------S---DLVAKAILDLIPVLNIRKLVVGTTKSSLRFHFHSINFNGIGTLILFYFSILLF 259 (261)
Q Consensus 195 ~gV~ve~~vie-------G---d~~aeaIv~~A~e~~aDLIVmGsr~sgl~~~~r~l~lGSVA~~Vlr~A~ipv~ 259 (261)
|..--.+ +. + ...++.|.+++++.++|+|++|....+.. .+.++.++...-.+|.+
T Consensus 82 -GaD~vi~-v~~d~~~~~~~~~~~~A~~La~~i~~~~~dlVl~G~~s~d~d-------~~~v~p~lA~~L~~~~v 147 (255)
T 1efv_B 82 -GADRGIH-VEVPPAEAERLGPLQVARVLAKLAEKEKVDLVLLGKQAIDDD-------CNQTGQMTAGFLDWPQG 147 (255)
T ss_dssp -TCSEEEE-EECCHHHHTTCCHHHHHHHHHHHHHHHTCSEEEEESCCTTTC-------CCCHHHHHHHHHTCCEE
T ss_pred -CCCEEEE-EecChhhcccCCHHHHHHHHHHHHHhcCCCEEEEeCcccCCc-------hhhHHHHHHHHhCCCcc
Confidence 4432222 22 1 13456788888888999999999954422 13455555555555544
No 32
>1efp_B ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3
Probab=79.83 E-value=2 Score=37.59 Aligned_cols=99 Identities=11% Similarity=0.065 Sum_probs=59.2
Q ss_pred cCChhHHHHHHHHHHHhcCCCC--eEEEEEEecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 024855 118 GKSQSSMDALSWTLRHAVNPST--LIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFLDTCSQS 195 (261)
Q Consensus 118 DgSe~S~~AL~~Al~~A~~~ga--~L~LLHVv~~~~~~p~~~g~~~~~~~~~e~~e~~~~~~~e~~~~~Lek~~~~~~~~ 195 (261)
-.++.+..||+.|+++... +. ++++|.+=++ . .++.++++..+
T Consensus 34 ~lnp~d~~Ale~A~~Lke~-g~~~~V~av~~G~~------------------~------------a~~~lr~ala~---- 78 (252)
T 1efp_B 34 SMNPFDEIAVEEAIRLKEK-GQAEEIIAVSIGVK------------------Q------------AAETLRTALAM---- 78 (252)
T ss_dssp EECHHHHHHHHHHHHHHTT-TSCSEEEEEEEESG------------------G------------GHHHHHHHHHH----
T ss_pred cCCHHHHHHHHHHHHHHhc-CCCceEEEEEeCCh------------------h------------HHHHHHHHHhc----
Confidence 3478999999999998765 66 8888876211 0 01122333222
Q ss_pred CCcEEEEEEE-------c---CChHHHHHHhhhhCCCcEEEECCCCCCcccccccceeccHHHHHhccCCccee
Q 024855 196 KVMVDTVLIE-------S---DLVAKAILDLIPVLNIRKLVVGTTKSSLRFHFHSINFNGIGTLILFYFSILLF 259 (261)
Q Consensus 196 gV~ve~~vie-------G---d~~aeaIv~~A~e~~aDLIVmGsr~sgl~~~~r~l~lGSVA~~Vlr~A~ipv~ 259 (261)
|..--.+ +. + ...+..|.+++++.++|+|++|....+.. .+.++.++...-.+|.+
T Consensus 79 GaD~vi~-v~~d~~~~~~~~~~~~a~~La~~i~~~~~dlVl~G~~s~d~~-------~~~v~p~lA~~L~~~~v 144 (252)
T 1efp_B 79 GADRAIL-VVAADDVQQDIEPLAVAKILAAVARAEGTELIIAGKQAIDND-------MNATGQMLAAILGWAQA 144 (252)
T ss_dssp TCSEEEE-EECCSSTTCCCCHHHHHHHHHHHHHHHTCSEEEEESCCTTTC-------CCCHHHHHHHHHTCEEE
T ss_pred CCCEEEE-EecChhhcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCc-------hhhHHHHHHHHhCCCcc
Confidence 4432222 22 1 13566888888888999999999954422 13455555555555544
No 33
>1k92_A Argininosuccinate synthase, argininosuccinate SY; N-type ATP pyrophosphatase, ligase; 1.60A {Escherichia coli} SCOP: c.26.2.1 d.210.1.1 PDB: 1k97_A* 1kp2_A* 1kp3_A*
Probab=76.32 E-value=17 Score=34.58 Aligned_cols=36 Identities=14% Similarity=0.145 Sum_probs=30.7
Q ss_pred CCCeEEEeecCChhHHHHHHHHHHHhcCCCCeEEEEEEec
Q 024855 109 EEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFP 148 (261)
Q Consensus 109 ~~kkILVaVDgSe~S~~AL~~Al~~A~~~ga~L~LLHVv~ 148 (261)
+.+||+|++.|...|.-++.|+.+. |.+|+.+|+.-
T Consensus 9 ~~~KVvVA~SGGlDSSvll~~L~e~----G~eViavtvd~ 44 (455)
T 1k92_A 9 VGQRIGIAFSGGLDTSAALLWMRQK----GAVPYAYTANL 44 (455)
T ss_dssp TTSEEEEECCSSHHHHHHHHHHHHT----TCEEEEEEEEC
T ss_pred CCCeEEEEEcChHHHHHHHHHHHHc----CCEEEEEEEEc
Confidence 5679999999999999999998652 78999999853
No 34
>2xry_A Deoxyribodipyrimidine photolyase; DNA damage, DNA repair; HET: FAD; 1.50A {Methanosarcina mazei} PDB: 2xrz_A*
Probab=76.04 E-value=10 Score=35.88 Aligned_cols=91 Identities=14% Similarity=0.089 Sum_probs=58.2
Q ss_pred cCChhHHHHHHHHHHHhcCCCCeEEEEEEecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 024855 118 GKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFLDTCSQSKV 197 (261)
Q Consensus 118 DgSe~S~~AL~~Al~~A~~~ga~L~LLHVv~~~~~~p~~~g~~~~~~~~~e~~e~~~~~~~e~~~~~Lek~~~~~~~~gV 197 (261)
|.=-.-..||..|.+.+...+..|..|.++++... .. ..... .-+.+-|+.+.+.+++.|+
T Consensus 46 DLRl~DN~aL~~A~~~a~~~~~~v~~vfi~dp~~~---~~--------~~~r~--------~Fl~~sL~~L~~~L~~~G~ 106 (482)
T 2xry_A 46 DQRAEDNWALLFSRAIAKEANVPVVVVFCLTDEFL---EA--------GIRQY--------EFMLKGLQELEVSLSRKKI 106 (482)
T ss_dssp CCCSSSCHHHHHHHHHHHHHTSCEEEEEEECTTGG---GS--------CHHHH--------HHHHHHHHHHHHHHHHTTC
T ss_pred CCCccccHHHHHHHHHHHHcCCcEEEEEEeChhhh---cc--------CHHHH--------HHHHHHHHHHHHHHHHcCC
Confidence 44334566788888776545667999999987431 00 11111 1223345555566666787
Q ss_pred cEEEEEEEcCChHHHHHHhhhhCCCcEEEECCC
Q 024855 198 MVDTVLIESDLVAKAILDLIPVLNIRKLVVGTT 230 (261)
Q Consensus 198 ~ve~~vieGd~~aeaIv~~A~e~~aDLIVmGsr 230 (261)
++. +..|+ +.+.|.+++++++++.|+.-..
T Consensus 107 ~L~--v~~g~-~~~~l~~l~~~~~~~~V~~~~~ 136 (482)
T 2xry_A 107 PSF--FLRGD-PGEKISRFVKDYNAGTLVTDFS 136 (482)
T ss_dssp CEE--EEESC-HHHHHHHHHHHTTCSEEEEECC
T ss_pred cEE--EEeCC-HHHHHHHHHHHcCCCEEEEecc
Confidence 763 45566 4799999999999999997544
No 35
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis}
Probab=75.72 E-value=28 Score=28.32 Aligned_cols=34 Identities=18% Similarity=0.273 Sum_probs=27.6
Q ss_pred CCeEEEeecCChhHHHHHHHHHHHhcCCCCeEEEEEEe
Q 024855 110 EDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVF 147 (261)
Q Consensus 110 ~kkILVaVDgSe~S~~AL~~Al~~A~~~ga~L~LLHVv 147 (261)
.++|+|++.|...|.-++.++.+. +.+++.+|+.
T Consensus 3 ~~~v~v~lSGG~DS~~ll~ll~~~----~~~v~~~~~~ 36 (219)
T 3bl5_A 3 KEKAIVVFSGGQDSTTCLLWALKE----FEEVETVTFH 36 (219)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHH----CSEEEEEEEE
T ss_pred CCCEEEEccCcHHHHHHHHHHHHc----CCceEEEEEe
Confidence 368999999999999888777654 3678899985
No 36
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=74.61 E-value=19 Score=29.66 Aligned_cols=34 Identities=9% Similarity=-0.129 Sum_probs=27.2
Q ss_pred CeEEEeecCChhHHHHHHHHHHHhcCCCCeEEEEEEec
Q 024855 111 DIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFP 148 (261)
Q Consensus 111 kkILVaVDgSe~S~~AL~~Al~~A~~~ga~L~LLHVv~ 148 (261)
++|+|++.|...|.-.|..+.+.. .++.++|+..
T Consensus 45 ~~v~Va~SGGkDS~vLL~ll~~~~----~~v~~v~vd~ 78 (215)
T 1sur_A 45 GEYVLSSSFGIQAAVSLHLVNQIR----PDIPVILTDT 78 (215)
T ss_dssp SEEEEECCCCTTHHHHHHHHHHHS----TTCEEEEEEC
T ss_pred CCEEEEecCCHHHHHHHHHHHHhC----CCCeEEEeeC
Confidence 599999999999998887776653 4588889853
No 37
>3umv_A Deoxyribodipyrimidine photo-lyase; CPD cyclobutane pyrimidine dimers, UV damaged DNA, DNA repai flavoprotein; HET: FAD; 1.71A {Oryza sativa japonica group}
Probab=70.53 E-value=11 Score=36.09 Aligned_cols=89 Identities=15% Similarity=0.109 Sum_probs=55.9
Q ss_pred cCChhHHHHHHHHHHHhcCCCCeEEEEEEecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 024855 118 GKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFLDTCSQSKV 197 (261)
Q Consensus 118 DgSe~S~~AL~~Al~~A~~~ga~L~LLHVv~~~~~~p~~~g~~~~~~~~~e~~e~~~~~~~e~~~~~Lek~~~~~~~~gV 197 (261)
|.=-.-..||..|++.|...+..|+.|+|+++....+ . ...-. -.+ +.+-|+...+.+++.|+
T Consensus 47 DLRl~DN~AL~~A~~~a~~~~~pVl~vfildp~~~~~-~--------~~~~r-~~F-------L~~sL~dL~~~L~~lG~ 109 (506)
T 3umv_A 47 DQRLADNWALLHAAGLAAASASPLAVAFALFPRPFLL-S--------ARRRQ-LGF-------LLRGLRRLAADAAARHL 109 (506)
T ss_dssp CCCSTTCHHHHHHHHHHHHHTCCEEEEEECCCTTCGG-G--------CCHHH-HHH-------HHHHHHHHHHHHHHTTC
T ss_pred CcchhhcHHHHHHHHhhhhcCCCEEEEEeccchhhcc-C--------CCHHH-HHH-------HHHHHHHHHHHHHHcCC
Confidence 4444556788888887765567899999998752111 0 01111 112 22334445555566677
Q ss_pred cEEEEEEEcCChHHHHHHhhhhCCCcEEEE
Q 024855 198 MVDTVLIESDLVAKAILDLIPVLNIRKLVV 227 (261)
Q Consensus 198 ~ve~~vieGd~~aeaIv~~A~e~~aDLIVm 227 (261)
+. ++..|++ .+. .+++++++++.|+.
T Consensus 110 ~L--~v~~G~p-~~v-~~L~~~~~a~~V~~ 135 (506)
T 3umv_A 110 PF--FLFTGGP-AEI-PALVQRLGASTLVA 135 (506)
T ss_dssp CE--EEESSCT-THH-HHHHHHTTCSEEEE
T ss_pred ce--EEEecCh-HHH-HHHHHhcCCCEEEe
Confidence 65 4556776 577 99999999999997
No 38
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1
Probab=66.00 E-value=49 Score=27.37 Aligned_cols=33 Identities=18% Similarity=0.060 Sum_probs=27.4
Q ss_pred CeEEEeecCChhHHHHHHHHHHHhcCCCCeEEEEEEe
Q 024855 111 DIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVF 147 (261)
Q Consensus 111 kkILVaVDgSe~S~~AL~~Al~~A~~~ga~L~LLHVv 147 (261)
++++|++.|...|.-++.++.+. +.+++.+|+.
T Consensus 3 ~kvvv~lSGG~DS~~~l~ll~~~----~~~v~av~~~ 35 (232)
T 2pg3_A 3 KRAVVVFSGGQDSTTCLIQALQD----YDDVHCITFD 35 (232)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHH----CSEEEEEEEE
T ss_pred CCEEEEecCcHHHHHHHHHHHHc----CCCEEEEEEE
Confidence 58999999999999998888664 2578889874
No 39
>2hma_A Probable tRNA (5-methylaminomethyl-2-thiouridylat methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae}
Probab=65.86 E-value=16 Score=33.46 Aligned_cols=35 Identities=9% Similarity=-0.065 Sum_probs=28.3
Q ss_pred CCCeEEEeecCChhHHHHHHHHHHHhcCCCCeEEEEEEe
Q 024855 109 EEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVF 147 (261)
Q Consensus 109 ~~kkILVaVDgSe~S~~AL~~Al~~A~~~ga~L~LLHVv 147 (261)
..++|+|++.|...|.-++.++.+ .+-+|+.||+.
T Consensus 8 ~~~kVlVa~SGGvDSsv~a~lL~~----~G~~V~~v~~~ 42 (376)
T 2hma_A 8 SKTRVVVGMSGGVDSSVTALLLKE----QGYDVIGIFMK 42 (376)
T ss_dssp GGSEEEEECCSSHHHHHHHHHHHH----TTCEEEEEEEE
T ss_pred CCCeEEEEEeCHHHHHHHHHHHHH----cCCcEEEEEEE
Confidence 567999999999999888766544 36889999985
No 40
>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} SCOP: c.26.2.6 d.308.1.1
Probab=64.69 E-value=61 Score=29.84 Aligned_cols=37 Identities=14% Similarity=0.073 Sum_probs=29.9
Q ss_pred CCCCeEEEeecCChhHHHHHHHHHHHhcCCCCeEEEEEEec
Q 024855 108 QEEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFP 148 (261)
Q Consensus 108 ~~~kkILVaVDgSe~S~~AL~~Al~~A~~~ga~L~LLHVv~ 148 (261)
...++++|++.|...|.-|+.++.+ .|.+++.+|+..
T Consensus 185 ~~~~kvlvalSGGvDS~vll~ll~~----~G~~v~av~v~~ 221 (413)
T 2c5s_A 185 GVGGKVMVLLSGGIDSPVAAYLTMK----RGVSVEAVHFHS 221 (413)
T ss_dssp TTTEEEEEECCSSSHHHHHHHHHHH----BTEEEEEEEEEC
T ss_pred CCCCeEEEEeCCCChHHHHHHHHHH----cCCcEEEEEEeC
Confidence 3468999999999999888877654 378999999863
No 41
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=64.55 E-value=35 Score=32.38 Aligned_cols=33 Identities=15% Similarity=0.039 Sum_probs=28.2
Q ss_pred CeEEEeecCChhHHHHHHHHHHHhcCCCCeEEEEEEe
Q 024855 111 DIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVF 147 (261)
Q Consensus 111 kkILVaVDgSe~S~~AL~~Al~~A~~~ga~L~LLHVv 147 (261)
++|+|++.|...|.-++.++.+. +.+++.+|+-
T Consensus 210 ~kvvvalSGGvDSsvla~ll~~~----g~~v~av~vd 242 (503)
T 2ywb_A 210 DRVLLAVSGGVDSSTLALLLAKA----GVDHLAVFVD 242 (503)
T ss_dssp SEEEEEECSSHHHHHHHHHHHHH----TCEEEEEEEE
T ss_pred ccEEEEecCCcchHHHHHHHHHc----CCeEEEEEEe
Confidence 79999999999999888777654 6899999984
No 42
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae}
Probab=63.84 E-value=25 Score=31.18 Aligned_cols=92 Identities=15% Similarity=0.117 Sum_probs=53.8
Q ss_pred CeEEEeecCChhHHHHHHHHHHHhc------------------CCCCeEEEEEEecCCCCCCCCCCCCCCCCCChhHHHH
Q 024855 111 DIIYVAVGKSQSSMDALSWTLRHAV------------------NPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLET 172 (261)
Q Consensus 111 kkILVaVDgSe~S~~AL~~Al~~A~------------------~~ga~L~LLHVv~~~~~~p~~~g~~~~~~~~~e~~e~ 172 (261)
++|+|+..|.+.|.-.|..+.+.+. .++..+.+||+..... .++. .+
T Consensus 54 ~~i~vafSGGKDS~VLL~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vv~iDtg~~--------------fpet-~~ 118 (306)
T 2wsi_A 54 GEISFSYNGGKDCQVLLLLYLSCLWEYFFIKAQNSQFDFEFQSFPMQRLPTVFIDQEET--------------FPTL-EN 118 (306)
T ss_dssp SSEEEECCSCHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCCCEEEEECCCTTC--------------CHHH-HH
T ss_pred CCEEEEecCCHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCeeEEEEeCCCC--------------CHHH-HH
Confidence 5899999999999988888776531 1245688888742211 1121 12
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCcEEEEEEE---cCChHHHHHHhhhhC-CCcEEEECCCC
Q 024855 173 FMAQETGKRRQLLQKFLDTCSQSKVMVDTVLIE---SDLVAKAILDLIPVL-NIRKLVVGTTK 231 (261)
Q Consensus 173 ~~~~~~e~~~~~Lek~~~~~~~~gV~ve~~vie---Gd~~aeaIv~~A~e~-~aDLIVmGsr~ 231 (261)
+ ++++ ++..|+++...-.. +....+++.++.+.. ..+.|++|.|+
T Consensus 119 f-----------v~~~---~~~ygl~l~v~~~~~~~~~~l~~~~~~~~k~~p~~~aii~G~Rr 167 (306)
T 2wsi_A 119 F-----------VLET---SERYCLSLYESQRQSGASVNMADAFRDFIKIYPETEAIVIGIRH 167 (306)
T ss_dssp H-----------HHHH---HHHTTEEEEECCC-----CCHHHHHHHHHHHCTTCCEEECCCCC
T ss_pred H-----------HHHH---HHHcCCCEEEEeCCccccccHHHHHHHHHhhCCCCcEEEEEEec
Confidence 2 2222 23335554321100 134556777777763 68999999994
No 43
>3ih5_A Electron transfer flavoprotein alpha-subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; 2.60A {Bacteroides thetaiotaomicron}
Probab=62.75 E-value=23 Score=29.91 Aligned_cols=86 Identities=10% Similarity=0.032 Sum_probs=55.8
Q ss_pred CCeEEEeecC-----ChhHHHHHHHHHHHhcCCCCeEEEEEEecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHH
Q 024855 110 EDIIYVAVGK-----SQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQL 184 (261)
Q Consensus 110 ~kkILVaVDg-----Se~S~~AL~~Al~~A~~~ga~L~LLHVv~~~~~~p~~~g~~~~~~~~~e~~e~~~~~~~e~~~~~ 184 (261)
++.|||=++- .+.+.++|..|.+++...+.++++|-+=+.. . + .
T Consensus 3 m~~ilV~~E~~~g~l~~~s~ell~~A~~La~~~g~~v~av~~G~~~---------------~-~---------------~ 51 (217)
T 3ih5_A 3 ANNLFVYCEIEEGIVADVSLELLTKGRSLANELNCQLEAVVAGTGL---------------K-E---------------I 51 (217)
T ss_dssp CCCEEEECCEETTEECHHHHHHHHHHHHHHHHHTCCEEEEEEESCC---------------T-T---------------T
T ss_pred cccEEEEEECcCCEECHHHHHHHHHHHHHHHhcCCeEEEEEECCCH---------------H-H---------------H
Confidence 4578887764 5789999999999987778888887652210 0 0 0
Q ss_pred HHHHHHHhhcCCCcEEEEEEEc--------CChHHHHHHhhhhCCCcEEEECCCC
Q 024855 185 LQKFLDTCSQSKVMVDTVLIES--------DLVAKAILDLIPVLNIRKLVVGTTK 231 (261)
Q Consensus 185 Lek~~~~~~~~gV~ve~~vieG--------d~~aeaIv~~A~e~~aDLIVmGsr~ 231 (261)
+++ +...|+.-- +++.. ...++.|.++++++++|+|++|+..
T Consensus 52 ~~~----~~~~Gad~v-~~v~~~~~~~~~~~~~a~~l~~~i~~~~p~~Vl~g~t~ 101 (217)
T 3ih5_A 52 EKQ----ILPYGVDKL-HVFDAEGLYPYTSLPHTSILVNLFKEEQPQICLMGATV 101 (217)
T ss_dssp HHH----HGGGTCSEE-EEEECGGGSSCCHHHHHHHHHHHHHHHCCSEEEEECSH
T ss_pred HHH----HHhcCCCEE-EEecCcccccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 111 122344322 22322 1356789999999999999999873
No 44
>2nz2_A Argininosuccinate synthase; amino-acid biosynthesis, aspartate, citrulline, ST genomics, structural genomics consortium, SGC, ligase; HET: CIR; 2.40A {Homo sapiens}
Probab=61.73 E-value=25 Score=32.82 Aligned_cols=34 Identities=9% Similarity=0.066 Sum_probs=28.9
Q ss_pred CCeEEEeecCChhHHHHHHHHHHHhcCCCCeEEEEEEe
Q 024855 110 EDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVF 147 (261)
Q Consensus 110 ~kkILVaVDgSe~S~~AL~~Al~~A~~~ga~L~LLHVv 147 (261)
.++|+|++.|...|.-++.|+.+. +.+|+.+|+.
T Consensus 5 ~~kVvvalSGGlDSsvll~lL~e~----G~eV~av~vd 38 (413)
T 2nz2_A 5 KGSVVLAYSGGLDTSCILVWLKEQ----GYDVIAYLAN 38 (413)
T ss_dssp CEEEEEECCSSHHHHHHHHHHHHT----TEEEEEEEEE
T ss_pred CCeEEEEEcChHHHHHHHHHHHHc----CCEEEEEEEE
Confidence 469999999999999999888653 6789999985
No 45
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET: TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A* 2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A*
Probab=61.08 E-value=37 Score=32.61 Aligned_cols=94 Identities=13% Similarity=0.094 Sum_probs=57.2
Q ss_pred cCChhHHHHHHHHHHHhcC--CCCeEEEEEEecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 024855 118 GKSQSSMDALSWTLRHAVN--PSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFLDTCSQS 195 (261)
Q Consensus 118 DgSe~S~~AL~~Al~~A~~--~ga~L~LLHVv~~~~~~p~~~g~~~~~~~~~e~~e~~~~~~~e~~~~~Lek~~~~~~~~ 195 (261)
|.=-.-..||..|++.+.. .+..|..|.|+++... +... .....+ .-+.+-|+.+.+.+++.
T Consensus 38 DLRl~DN~aL~~A~~~~~~~~~~~pv~~vfi~dp~~~-----~~~~---~~~~r~--------~Fl~~sL~~L~~~L~~~ 101 (543)
T 2wq7_A 38 GLRLHDNPALSHIFTAANAAPGRYFVRPIFILDPGIL-----DWMQ---VGANRW--------RFLQQTLEDLDNQLRKL 101 (543)
T ss_dssp CCCSTTCHHHHHHHHHHHHSTTTEEEEEEEEECTTGG-----GCTT---SCHHHH--------HHHHHHHHHHHHHHHHT
T ss_pred CcCcchHHHHHHHHHhCccccCCCeEEEEEEECchhh-----cccC---CCHHHH--------HHHHHHHHHHHHHHHHC
Confidence 4434556788888776643 3556999999987532 1000 111111 12233445555556666
Q ss_pred CCcEEEEEEEcCChHHHHHHhhhhCCCcEEEECCC
Q 024855 196 KVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTT 230 (261)
Q Consensus 196 gV~ve~~vieGd~~aeaIv~~A~e~~aDLIVmGsr 230 (261)
|++.. +..|+ +.+.|.+++++++++.|+.-..
T Consensus 102 G~~L~--v~~g~-~~~~l~~l~~~~~~~~v~~~~~ 133 (543)
T 2wq7_A 102 NSRLF--VVRGK-PAEVFPRIFKSWRVEMLTFETD 133 (543)
T ss_dssp TCCCE--EEESC-HHHHHHHHHHHTTEEEEEEECC
T ss_pred CCeEE--EEeCC-HHHHHHHHHHHcCCCEEEEecC
Confidence 77653 34565 4799999999999999988654
No 46
>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii} SCOP: c.26.2.6 d.308.1.1
Probab=60.82 E-value=66 Score=28.44 Aligned_cols=87 Identities=15% Similarity=0.112 Sum_probs=50.8
Q ss_pred CCCeEEEeecCChhHHHHHHHHHHHhcCCCCeEEEEEEecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 024855 109 EEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKF 188 (261)
Q Consensus 109 ~~kkILVaVDgSe~S~~AL~~Al~~A~~~ga~L~LLHVv~~~~~~p~~~g~~~~~~~~~e~~e~~~~~~~e~~~~~Lek~ 188 (261)
..++++|++.| -.|.-|+-++ .+.|.+++.+|.. + + ... .+.++++.+..
T Consensus 178 ~~~kvlvllSG-vDS~vaa~ll----~~~G~~v~~v~~~----~-----~--------~~~--------~~~a~~~a~~l 227 (307)
T 1vbk_A 178 TEGRMIGILHD-ELSALAIFLM----MKRGVEVIPVYIG----K-----D--------DKN--------LEKVRSLWNLL 227 (307)
T ss_dssp TTCEEEEECSS-HHHHHHHHHH----HHBTCEEEEEEES----C-----S--------SHH--------HHHHHHHHHHH
T ss_pred CCCcEEEEEeC-CcHHHHHHHH----HhCCCeEEEEEEE----E-----C--------HHH--------HHHHHHHHHHH
Confidence 35799999999 9887655443 3468999999974 1 1 010 11222222222
Q ss_pred HHHhhcCCCcEEEEEEEcCChHHHHHHhhhhCCCcEEEECCC
Q 024855 189 LDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTT 230 (261)
Q Consensus 189 ~~~~~~~gV~ve~~vieGd~~aeaIv~~A~e~~aDLIVmGsr 230 (261)
....-..+++.. ++. .. ..+.++|++.++|.|+.|.+
T Consensus 228 ~~~~~~~~i~~~--vv~--~~-~~~~~~A~~~ga~~I~tG~~ 264 (307)
T 1vbk_A 228 KRYSYGSKGFLV--VAE--SF-DRVLKLIRDFGVKGVIKGLR 264 (307)
T ss_dssp HTTCTTSCCCCE--EES--SH-HHHHHHHHHHTCCEEECCCC
T ss_pred hhhccCCCCcEE--EeC--CC-HHHHHHHHHcCCCEEEECcc
Confidence 111112355543 332 12 33449999999999999998
No 47
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae}
Probab=59.55 E-value=50 Score=28.29 Aligned_cols=37 Identities=3% Similarity=-0.033 Sum_probs=29.4
Q ss_pred CCeEEEeecCChhHHHHHHHHHHHhcCCCCeEEEEEEe
Q 024855 110 EDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVF 147 (261)
Q Consensus 110 ~kkILVaVDgSe~S~~AL~~Al~~A~~~ga~L~LLHVv 147 (261)
+.+|+|++.|.+.|.-.|..+.+.... +..+.++|+-
T Consensus 41 ~~~v~va~SGGkDS~vLL~ll~~~~~~-~~~i~vv~iD 77 (261)
T 2oq2_A 41 FPHLFQTTAFGLTGLVTIDMLSKLSEK-YYMPELLFID 77 (261)
T ss_dssp CSSEEEECCCCHHHHHHHHHHHHHTTT-SCCCEEEEEC
T ss_pred CCCEEEEecCCHHHHHHHHHHHHhCcc-CCCeeEEEec
Confidence 348999999999999999888776543 4578889983
No 48
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=59.05 E-value=28 Score=29.08 Aligned_cols=49 Identities=4% Similarity=0.171 Sum_probs=34.0
Q ss_pred HHHHHHHhhcCCCcEEEEEEEcCChHHHHHHhhh---hCCCcEEEECCCCCC
Q 024855 185 LQKFLDTCSQSKVMVDTVLIESDLVAKAILDLIP---VLNIRKLVVGTTKSS 233 (261)
Q Consensus 185 Lek~~~~~~~~gV~ve~~vieGd~~aeaIv~~A~---e~~aDLIVmGsr~sg 233 (261)
++++.+.+++.|++++..++.-...-+.+.+|++ +.+++.||.|+-+.+
T Consensus 38 ~~~a~~~L~~~gI~~e~~V~SAHRtp~~l~~~~~~a~~~g~~ViIa~AG~aa 89 (181)
T 4b4k_A 38 MKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAA 89 (181)
T ss_dssp HHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEECSSC
T ss_pred HHHHHHHHHHcCCCeeEEEEccccChHHHHHHHHHHHhcCceEEEEeccccc
Confidence 4455666777799999877755443466666654 568899998876554
No 49
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}
Probab=58.59 E-value=31 Score=30.99 Aligned_cols=94 Identities=9% Similarity=0.017 Sum_probs=55.3
Q ss_pred CCCeEEEeecC----------ChhHHHHHHHHHHHhcCCCCeEEEEEEecCCCCCCCCCCCCCCCCCChhHHHHHHHHHH
Q 024855 109 EEDIIYVAVGK----------SQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQET 178 (261)
Q Consensus 109 ~~kkILVaVDg----------Se~S~~AL~~Al~~A~~~ga~L~LLHVv~~~~~~p~~~g~~~~~~~~~e~~e~~~~~~~ 178 (261)
.+++|=|=+.+ ..+..-++-.|..+...-+++|.|+-|++.. ..+
T Consensus 154 ~~~~IdvW~~~~~~~W~~g~~~~Ng~LmlllAylL~~nW~A~I~L~~vV~de-------------------------~a~ 208 (294)
T 3g40_A 154 RQNLINLWIENRGLDWDISMELGNMDLALLIAYKLKSNWKASLSFMTFAPTA-------------------------IQA 208 (294)
T ss_dssp TSCEEEEECCCC---CCCCSCCCTTHHHHHHHHHHHHHHTCEEEEEEECSSH-------------------------HHH
T ss_pred CCceEEEecCCCCCcccccccccchhHHHHHHHHHhhCcCCeEEEEEecCCH-------------------------HHH
Confidence 67788776333 1233444444544444459999999996431 223
Q ss_pred HHHHHHHHHHHHHhhcCCCcEEEEEEEcCChHHHHHHhhhhCCCcEEEECCC-CCCc
Q 024855 179 GKRRQLLQKFLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTT-KSSL 234 (261)
Q Consensus 179 e~~~~~Lek~~~~~~~~gV~ve~~vieGd~~aeaIv~~A~e~~aDLIVmGsr-~sgl 234 (261)
+.+++.+++..+.++- +..+ .++. ++. ..|+..+ -++||+++|-. ..-+
T Consensus 209 ~~a~~~l~~Lv~~~Ri-~a~~--~vv~-~~F-~~il~~s--~~ADL~flGl~~~~df 258 (294)
T 3g40_A 209 QAAENFLQSLAELARI-PNVK--MQVL-REN-PIKSSKL--PFASLHIFSLDPNPDL 258 (294)
T ss_dssp HHHHHHHHHHHHHHTC-CSCE--EEEE-SSC-TTTSSSC--CCCSEEEEECCSSCCH
T ss_pred HHHHHHHHHHHHHhcC-CceE--EEec-Cch-HHHHhhC--cCCCEEEEcCCCCCcH
Confidence 4556667777776652 3333 3344 554 5555555 46999999987 4443
No 50
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A {Synechocystis SP} SCOP: a.99.1.1 c.28.1.1
Probab=57.24 E-value=53 Score=30.92 Aligned_cols=91 Identities=11% Similarity=0.131 Sum_probs=52.7
Q ss_pred hHHHHHHHHHHHhcCCCCeEEEEEEecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEE
Q 024855 122 SSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFLDTCSQSKVMVDT 201 (261)
Q Consensus 122 ~S~~AL~~Al~~A~~~ga~L~LLHVv~~~~~~p~~~g~~~~~~~~~e~~e~~~~~~~e~~~~~Lek~~~~~~~~gV~ve~ 201 (261)
.-..||..|++ .+..+..|.|+++........+. + ....... .-+.+-|+.+.+.+++.|++..
T Consensus 19 ~DN~aL~~A~~----~~~~v~~vfi~dp~~~~~~~~~~-~--~~~~~r~--------~Fl~~sL~~L~~~L~~~G~~L~- 82 (489)
T 1np7_A 19 HDHEPLHRALK----SGLAITAVYCYDPRQFAQTHQGF-A--KTGPWRS--------NFLQQSVQNLAESLQKVGNKLL- 82 (489)
T ss_dssp TTCHHHHHHHH----TTSEEEEEEEECGGGGSBCTTSC-B--SSCHHHH--------HHHHHHHHHHHHHHHHTTCCEE-
T ss_pred chHHHHHHHHh----cCCCEEEEEEECchhhccccccc-C--CCCHHHH--------HHHHHHHHHHHHHHHHCCCcEE-
Confidence 44567776654 24578899999864321100010 0 0111111 1223345555556666787763
Q ss_pred EEEEcCChHHHHHHhhhhCCCcEEEECCC
Q 024855 202 VLIESDLVAKAILDLIPVLNIRKLVVGTT 230 (261)
Q Consensus 202 ~vieGd~~aeaIv~~A~e~~aDLIVmGsr 230 (261)
+..|++ .+.|.+++++++++.|+.-..
T Consensus 83 -v~~g~~-~~~l~~l~~~~~~~~V~~~~~ 109 (489)
T 1np7_A 83 -VTTGLP-EQVIPQIAKQINAKTIYYHRE 109 (489)
T ss_dssp -EEESCH-HHHHHHHHHHTTEEEEEEECC
T ss_pred -EEECCH-HHHHHHHHHHcCCCEEEEecc
Confidence 455664 799999999999999888655
No 51
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=56.84 E-value=28 Score=33.36 Aligned_cols=34 Identities=9% Similarity=0.060 Sum_probs=28.2
Q ss_pred CeEEEeecCChhHHHHHHHHHHHhcCCCCeEEEEEEe
Q 024855 111 DIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVF 147 (261)
Q Consensus 111 kkILVaVDgSe~S~~AL~~Al~~A~~~ga~L~LLHVv 147 (261)
++|+|++.|...|.-++.++.+.. |.+++.+||.
T Consensus 231 ~kvlvalSGGvDSsvla~ll~~~~---G~~v~av~vd 264 (527)
T 3tqi_A 231 EQVIVGLSGGVDSAVTATLVHKAI---GDQLVCVLVD 264 (527)
T ss_dssp SCEEEECTTTHHHHHHHHHHHHHH---GGGEEEEEEC
T ss_pred CeEEEEEecCcCHHHHHHHHHHHh---CCeEEEEEec
Confidence 799999999999998887776543 5679999984
No 52
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=56.82 E-value=26 Score=29.10 Aligned_cols=50 Identities=8% Similarity=0.208 Sum_probs=34.0
Q ss_pred HHHHHHHhhcCCCcEEEEEEEcCChHHHHHHhhh---hCCCcEEEECCCCCCc
Q 024855 185 LQKFLDTCSQSKVMVDTVLIESDLVAKAILDLIP---VLNIRKLVVGTTKSSL 234 (261)
Q Consensus 185 Lek~~~~~~~~gV~ve~~vieGd~~aeaIv~~A~---e~~aDLIVmGsr~sgl 234 (261)
++++.+.++..|++++..+..-+..-+.+.+|++ +.+++.||.|.-+.+.
T Consensus 28 ~~~a~~~l~~~gi~~ev~V~saHR~p~~l~~~~~~a~~~g~~ViIa~AG~aah 80 (173)
T 4grd_A 28 MKHAVAILQEFGVPYEAKVVSAHRMPDEMFDYAEKARERGLRAIIAGAGGAAH 80 (173)
T ss_dssp HHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHHTTTTCSEEEEEEESSCC
T ss_pred HHHHHHHHHHcCCCEEEEEEccccCHHHHHHHHHHHHhcCCeEEEEecccccc
Confidence 4455556677799998776654544466666655 4788999888876553
No 53
>1kor_A Argininosuccinate synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: ANP ARG; 1.95A {Thermus thermophilus} SCOP: c.26.2.1 d.210.1.1 PDB: 1j1z_A* 1j21_A* 1kh1_A 1kh2_A* 1kh3_A* 1j20_A*
Probab=56.05 E-value=56 Score=30.22 Aligned_cols=34 Identities=12% Similarity=0.047 Sum_probs=28.8
Q ss_pred CeEEEeecCChhHHHHHHHHHHHhcCCCCeEEEEEEe
Q 024855 111 DIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVF 147 (261)
Q Consensus 111 kkILVaVDgSe~S~~AL~~Al~~A~~~ga~L~LLHVv 147 (261)
++|+|++.|...|.-++.|+.+.. +.+++.+|+-
T Consensus 1 ~kVvva~SGG~DSsvll~ll~~~~---g~~V~av~vd 34 (400)
T 1kor_A 1 MKIVLAYSGGLDTSIILKWLKETY---RAEVIAFTAD 34 (400)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHH---TCEEEEEEEE
T ss_pred CcEEEEEeChHHHHHHHHHHHHhh---CCcEEEEEEe
Confidence 489999999999999999987653 5789999985
No 54
>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B; pyrococcus horikoshii OT3, structural genomics, NPPSFA; 1.43A {Pyrococcus horikoshii} PDB: 2z0c_A 3a4i_A
Probab=55.58 E-value=46 Score=29.42 Aligned_cols=34 Identities=12% Similarity=0.061 Sum_probs=28.0
Q ss_pred CeEEEeecCChhHHHHHHHHHHHhcCCCCeEEEEEEe
Q 024855 111 DIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVF 147 (261)
Q Consensus 111 kkILVaVDgSe~S~~AL~~Al~~A~~~ga~L~LLHVv 147 (261)
++|+|++.|...|.-++.++.+.. |.+++.+|+.
T Consensus 21 ~kvlvalSGGvDSsvla~ll~~~~---g~~v~av~vd 54 (308)
T 2dpl_A 21 SKAIIALSGGVDSSTAAVLAHKAI---GDRLHAVFVN 54 (308)
T ss_dssp SCEEEECCSSHHHHHHHHHHHHHH---GGGEEEEEEE
T ss_pred CCEEEEEeChHHHHHHHHHHHHhh---CCCEEEEEEc
Confidence 689999999999998887776653 4679999985
No 55
>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii}
Probab=55.56 E-value=31 Score=28.16 Aligned_cols=49 Identities=4% Similarity=0.047 Sum_probs=36.0
Q ss_pred HHHHHHHhhcCCCcEEEEEEEcCChHHHHHHhhhhCCCcEEEECCCCCC
Q 024855 185 LQKFLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTTKSS 233 (261)
Q Consensus 185 Lek~~~~~~~~gV~ve~~vieGd~~aeaIv~~A~e~~aDLIVmGsr~sg 233 (261)
++++...++..|++++..+..-+..-+.+.+++++...+.||.+.-+.+
T Consensus 15 ~~~a~~~l~~~gi~~dv~V~saHR~p~~~~~~~~~a~~~ViIa~AG~aa 63 (157)
T 2ywx_A 15 AEKAVNILKEFGVEFEVRVASAHRTPELVEEIVKNSKADVFIAIAGLAA 63 (157)
T ss_dssp HHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHCCCSEEEEEEESSC
T ss_pred HHHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHhcCCCEEEEEcCchh
Confidence 4455666777799998877655555688999998766688888876655
No 56
>2j07_A Deoxyribodipyrimidine photo-lyase; flavoprotein, nucleotide-binding, DNA repair; HET: FAD HDF; 1.95A {Thermus thermophilus} SCOP: a.99.1.1 c.28.1.1 PDB: 1iqu_A* 1iqr_A* 2j08_A* 2j09_A*
Probab=55.05 E-value=35 Score=31.57 Aligned_cols=45 Identities=7% Similarity=0.002 Sum_probs=32.9
Q ss_pred HHHHHHHHHhhcCCCcEEEEEEEcCChHHHHHHhhhhCCCcEEEECCC
Q 024855 183 QLLQKFLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTT 230 (261)
Q Consensus 183 ~~Lek~~~~~~~~gV~ve~~vieGd~~aeaIv~~A~e~~aDLIVmGsr 230 (261)
+-|+.+.+.+++.|++.. +..|++ .+.|.+++++++++.|+.-..
T Consensus 52 ~sL~~l~~~L~~~g~~l~--~~~g~~-~~~l~~l~~~~~~~~v~~~~~ 96 (420)
T 2j07_A 52 ENVRALREAYRARGGALW--VLEGLP-WEKVPEAARRLKAKAVYALTS 96 (420)
T ss_dssp HHHHHHHHHHHHTTCCEE--EEESCH-HHHHHHHHHHTTCSEEEEECC
T ss_pred HHHHHHHHHHHHCCCeEE--EEeCCH-HHHHHHHHHHcCCCEEEEecc
Confidence 345555566666787753 455664 799999999999999998554
No 57
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=54.52 E-value=29 Score=28.69 Aligned_cols=49 Identities=2% Similarity=0.117 Sum_probs=34.1
Q ss_pred HHHHHHHhhcCCCcEEEEEEEcCChHHHHHHhhh---hCCCcEEEECCCCCC
Q 024855 185 LQKFLDTCSQSKVMVDTVLIESDLVAKAILDLIP---VLNIRKLVVGTTKSS 233 (261)
Q Consensus 185 Lek~~~~~~~~gV~ve~~vieGd~~aeaIv~~A~---e~~aDLIVmGsr~sg 233 (261)
++++...++..|++++..+..-+..-+.+.+|++ +.+++.||.|.-+.+
T Consensus 22 ~~~a~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa 73 (169)
T 3trh_A 22 METAFTELKSLGIPFEAHILSAHRTPKETVEFVENADNRGCAVFIAAAGLAA 73 (169)
T ss_dssp HHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHHHHTTEEEEEEEECSSC
T ss_pred HHHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEECChhh
Confidence 4455566777799998776654444577777755 478998888877655
No 58
>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein; HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} SCOP: a.99.1.1 c.28.1.1 PDB: 1u3c_A*
Probab=54.29 E-value=88 Score=29.56 Aligned_cols=90 Identities=10% Similarity=0.057 Sum_probs=54.0
Q ss_pred cCChhHHHHHHHHHHHhcCCCCeEEEEEEecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 024855 118 GKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFLDTCSQSKV 197 (261)
Q Consensus 118 DgSe~S~~AL~~Al~~A~~~ga~L~LLHVv~~~~~~p~~~g~~~~~~~~~e~~e~~~~~~~e~~~~~Lek~~~~~~~~gV 197 (261)
|.=-.-..||..|++. + .+..|.|+++..... ..+ ... . +.-+.+-|+.+.+.+++.|+
T Consensus 21 DLRl~DN~aL~~A~~~----~-~v~pvfi~dp~~~~~----~~~----~~~--~------~~fl~~sL~~L~~~L~~~G~ 79 (509)
T 1u3d_A 21 DLRVEDNPALAAAVRA----G-PVIALFVWAPEEEGH----YHP----GRV--S------RWWLKNSLAQLDSSLRSLGT 79 (509)
T ss_dssp CCCSTTCHHHHHHHHH----S-CEEEEEEECGGGGTT----CCC----CHH--H------HHHHHHHHHHHHHHHHHTTC
T ss_pred CCccchhHHHHHHHhC----C-CEEEEEEECchhccc----CCc----chH--H------HHHHHHHHHHHHHHHHHCCC
Confidence 4434556678877764 2 477888887643210 000 100 0 01233445556666667787
Q ss_pred cEEEEEEEcCChHHHHHHhhhhCCCcEEEECCC
Q 024855 198 MVDTVLIESDLVAKAILDLIPVLNIRKLVVGTT 230 (261)
Q Consensus 198 ~ve~~vieGd~~aeaIv~~A~e~~aDLIVmGsr 230 (261)
++ ++..++++.+.|.+++++++++.|+.-..
T Consensus 80 ~L--~v~~~g~~~~~l~~l~~~~~~~~V~~~~~ 110 (509)
T 1u3d_A 80 CL--ITKRSTDSVASLLDVVKSTGASQIFFNHL 110 (509)
T ss_dssp CE--EEEECSCHHHHHHHHHHHHTCCEEEEECC
T ss_pred eE--EEEeCCCHHHHHHHHHHHcCCCEEEEecc
Confidence 75 33445556799999999999999987544
No 59
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=53.47 E-value=32 Score=28.58 Aligned_cols=49 Identities=8% Similarity=0.169 Sum_probs=34.0
Q ss_pred HHHHHHHhhcCCCcEEEEEEEcCChHHHHHHhhh---hCCCcEEEECCCCCC
Q 024855 185 LQKFLDTCSQSKVMVDTVLIESDLVAKAILDLIP---VLNIRKLVVGTTKSS 233 (261)
Q Consensus 185 Lek~~~~~~~~gV~ve~~vieGd~~aeaIv~~A~---e~~aDLIVmGsr~sg 233 (261)
++++...++..|++++..+..-+..-+.+.++++ +.+++.||.|.-+.+
T Consensus 28 ~~~a~~~L~~~Gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa 79 (174)
T 3kuu_A 28 MQFAADVLTTLNVPFHVEVVSAHRTPDRLFSFAEQAEANGLHVIIAGNGGAA 79 (174)
T ss_dssp HHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHTTTTTCSEEEEEEESSC
T ss_pred HHHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEECChhh
Confidence 4455566777799998776654444577777765 467898888876655
No 60
>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A {Arabidopsis thaliana}
Probab=52.77 E-value=34 Score=32.96 Aligned_cols=90 Identities=9% Similarity=0.176 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHhcCCCCeEEEEEEecCCCCCCC----CCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 024855 123 SMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPS----PLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFLDTCSQSKVM 198 (261)
Q Consensus 123 S~~AL~~Al~~A~~~ga~L~LLHVv~~~~~~p~----~~g~~~~~~~~~e~~e~~~~~~~e~~~~~Lek~~~~~~~~gV~ 198 (261)
-..||..|+ ..+..|+.|+|+++....+. ..|.. ....-. -.+ +.+-|+.+.+.+++.|.+
T Consensus 19 DN~AL~~A~----~~~~~vlpvfi~dp~~~~~~~~~~~~g~~---~~g~~r-~~F-------l~~sL~~L~~~L~~~G~~ 83 (537)
T 3fy4_A 19 DNPALEYAS----KGSEFMYPVFVIDPHYMESDPSAFSPGSS---RAGVNR-IRF-------LLESLKDLDSSLKKLGSR 83 (537)
T ss_dssp TCHHHHHHH----TTCSCEEEEEEECHHHHSCCTTSSSSBCS---SCBHHH-HHH-------HHHHHHHHHHHHHHTTCC
T ss_pred hhHHHHHHH----hcCCCEEEEEEeChhhhcccccccccccc---cCCHHH-HHH-------HHHHHHHHHHHHHHcCCc
Confidence 344665554 34567999999976422110 01100 011111 112 223344445555566766
Q ss_pred EEEEEEEcCChHHHHHHhhhhCCCcEEEECCC
Q 024855 199 VDTVLIESDLVAKAILDLIPVLNIRKLVVGTT 230 (261)
Q Consensus 199 ve~~vieGd~~aeaIv~~A~e~~aDLIVmGsr 230 (261)
. ++..|++ .+.|.+++++++++.|+.-..
T Consensus 84 L--~v~~G~~-~~vl~~L~~~~~~~~V~~n~~ 112 (537)
T 3fy4_A 84 L--LVFKGEP-GEVLVRCLQEWKVKRLCFEYD 112 (537)
T ss_dssp C--EEEESCH-HHHHHHHHTTSCEEEEEECCC
T ss_pred e--EEEECCH-HHHHHHHHHHcCCCEEEEecc
Confidence 4 3455764 799999999999999998654
No 61
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=52.54 E-value=37 Score=28.08 Aligned_cols=49 Identities=4% Similarity=0.183 Sum_probs=33.5
Q ss_pred HHHHHHHhhcCCCcEEEEEEEcCChHHHHHHhhhh---CCCcEEEECCCCCC
Q 024855 185 LQKFLDTCSQSKVMVDTVLIESDLVAKAILDLIPV---LNIRKLVVGTTKSS 233 (261)
Q Consensus 185 Lek~~~~~~~~gV~ve~~vieGd~~aeaIv~~A~e---~~aDLIVmGsr~sg 233 (261)
++++...++..|++++..+..-...-+.+.+|+++ .+++.||.|.-+.+
T Consensus 27 ~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa 78 (170)
T 1xmp_A 27 MKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAA 78 (170)
T ss_dssp HHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSC
T ss_pred HHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHHHhCCCcEEEEECCchh
Confidence 44555566777999987766444445777777664 56898888877655
No 62
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=51.74 E-value=15 Score=27.84 Aligned_cols=45 Identities=27% Similarity=0.282 Sum_probs=25.6
Q ss_pred HHHHHHHhhcCCCcEEEEEEEcCChHHHHHHhhhhCCCcEEEECCC
Q 024855 185 LQKFLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTT 230 (261)
Q Consensus 185 Lek~~~~~~~~gV~ve~~vieGd~~aeaIv~~A~e~~aDLIVmGsr 230 (261)
|.+|.++.+..|+++.++-- -....+.|-++++++++..+|+---
T Consensus 15 lrkfkdiikkngfkvrtvrs-pqelkdsieelvkkynativvvvvd 59 (134)
T 2l69_A 15 LRKFKDIIKKNGFKVRTVRS-PQELKDSIEELVKKYNATIVVVVVD 59 (134)
T ss_dssp HHHHHHHHHHTTCEEEEECS-HHHHHHHHHHHTTCCCCEEEEEECS
T ss_pred HHHHHHHHHhcCceEEEecC-HHHHHHHHHHHHHHhCCeEEEEEEc
Confidence 45566666666776654421 1223456666777777776665433
No 63
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=51.52 E-value=39 Score=27.78 Aligned_cols=49 Identities=6% Similarity=0.209 Sum_probs=33.8
Q ss_pred HHHHHHHhhcCCCcEEEEEEEcCChHHHHHHhhhh---CCCcEEEECCCCCC
Q 024855 185 LQKFLDTCSQSKVMVDTVLIESDLVAKAILDLIPV---LNIRKLVVGTTKSS 233 (261)
Q Consensus 185 Lek~~~~~~~~gV~ve~~vieGd~~aeaIv~~A~e---~~aDLIVmGsr~sg 233 (261)
++++.+.++..|++++..+..-...-+.+.+|+++ .+++.||.|.-+.+
T Consensus 21 ~~~a~~~l~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa 72 (166)
T 3oow_A 21 MKECCDILDNLGIGYECEVVSAHRTPDKMFDYAETAKERGLKVIIAGAGGAA 72 (166)
T ss_dssp HHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEECSSC
T ss_pred HHHHHHHHHHcCCCEEEEEEcCcCCHHHHHHHHHHHHhCCCcEEEEECCcch
Confidence 44555666777999887766544445777777654 56899998887655
No 64
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=50.81 E-value=54 Score=23.24 Aligned_cols=44 Identities=2% Similarity=0.036 Sum_probs=28.3
Q ss_pred HHHHHHhhhhCCCcEEEECCCCCCcccccccceeccHHHHHhccCCcceee
Q 024855 210 AKAILDLIPVLNIRKLVVGTTKSSLRFHFHSINFNGIGTLILFYFSILLFC 260 (261)
Q Consensus 210 aeaIv~~A~e~~aDLIVmGsr~sgl~~~~r~l~lGSVA~~Vlr~A~ipv~~ 260 (261)
++..++.+++..+|+|++.-+-.+... -.+..++-+..++|+++
T Consensus 35 ~~~al~~~~~~~~dlii~D~~~p~~~g-------~~~~~~lr~~~~~~ii~ 78 (120)
T 3f6p_A 35 GNEAVEMVEELQPDLILLDIMLPNKDG-------VEVCREVRKKYDMPIIM 78 (120)
T ss_dssp HHHHHHHHHTTCCSEEEEETTSTTTHH-------HHHHHHHHTTCCSCEEE
T ss_pred HHHHHHHHhhCCCCEEEEeCCCCCCCH-------HHHHHHHHhcCCCCEEE
Confidence 355667778889999999988444321 12444555556777765
No 65
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*
Probab=50.15 E-value=38 Score=27.65 Aligned_cols=49 Identities=6% Similarity=0.024 Sum_probs=34.3
Q ss_pred HHHHHHHhhcCCCcEEEEEEEcCChHHHHHHhhhh----CCCcEEEECCCCCC
Q 024855 185 LQKFLDTCSQSKVMVDTVLIESDLVAKAILDLIPV----LNIRKLVVGTTKSS 233 (261)
Q Consensus 185 Lek~~~~~~~~gV~ve~~vieGd~~aeaIv~~A~e----~~aDLIVmGsr~sg 233 (261)
++++...++..|++++..+..-+..-+.+.+|+++ .+++.||.|.-+.+
T Consensus 18 ~~~a~~~l~~~gi~~ev~V~saHR~p~~~~~~~~~a~~~~~~~ViIa~AG~aa 70 (159)
T 3rg8_A 18 AEKIASELKTFGIEYAIRIGSAHKTAEHVVSMLKEYEALDRPKLYITIAGRSN 70 (159)
T ss_dssp HHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHHHTSCSCEEEEEECCSSC
T ss_pred HHHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHhhhcCCCcEEEEECCchh
Confidence 44555667777999987766544445777777653 25899999887655
No 66
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Probab=49.45 E-value=38 Score=28.30 Aligned_cols=50 Identities=6% Similarity=0.166 Sum_probs=34.3
Q ss_pred HHHHHHHhhcCCCcEEEEEEEcCChHHHHHHhhhh---CCCcEEEECCCCCCc
Q 024855 185 LQKFLDTCSQSKVMVDTVLIESDLVAKAILDLIPV---LNIRKLVVGTTKSSL 234 (261)
Q Consensus 185 Lek~~~~~~~~gV~ve~~vieGd~~aeaIv~~A~e---~~aDLIVmGsr~sgl 234 (261)
++++...++..|++++..+..-+..-+.+.+|+++ .+++.||.|.-+.+.
T Consensus 37 ~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~ 89 (182)
T 1u11_A 37 MRHADALLTELEIPHETLIVSAHRTPDRLADYARTAAERGLNVIIAGAGGAAH 89 (182)
T ss_dssp HHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCC
T ss_pred HHHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEecCchhh
Confidence 44555666777999987776544445777777764 568988888776553
No 67
>3tvs_A Cryptochrome-1; circadian clock light entrainment, jetlag, phosphorylation, gene regulation, signaling protein; HET: TPO FAD; 2.30A {Drosophila melanogaster} PDB: 4gu5_A*
Probab=49.21 E-value=34 Score=32.93 Aligned_cols=87 Identities=13% Similarity=0.090 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHhcCCCCeEEEEEEecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcC---CCcE
Q 024855 123 SMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFLDTCSQS---KVMV 199 (261)
Q Consensus 123 S~~AL~~Al~~A~~~ga~L~LLHVv~~~~~~p~~~g~~~~~~~~~e~~e~~~~~~~e~~~~~Lek~~~~~~~~---gV~v 199 (261)
-..||..|++.+. .+..|+.|+|+++..... . ....-. - .=+.+-|+...+.+++. |++.
T Consensus 18 DN~AL~~A~~~~~-~g~~vl~vfi~dp~~~~~------~--~~~~~r-~-------~Fl~~sL~~L~~~L~~~~~~G~~L 80 (538)
T 3tvs_A 18 DNPALLAALADKD-QGIALIPVFIFDGESAGT------K--NVGYNR-M-------RFLLDSLQDIDDQLQAATDGRGRL 80 (538)
T ss_dssp SCHHHHTTTGGGT-TTCBCCEEEEECSSSSCS------T--TCCHHH-H-------HHHHHHHHHHHHHGGGSCSSSSCC
T ss_pred hhHHHHHHHHhCC-CCCCEEEEEecChhhhcc------C--CCCHHH-H-------HHHHHHHHHHHHHHHHhhcCCCeE
Confidence 3456766665543 344799999998753210 0 011111 1 12233445555566666 7664
Q ss_pred EEEEEEcCChHHHHHHhhhhCCCcEEEECC
Q 024855 200 DTVLIESDLVAKAILDLIPVLNIRKLVVGT 229 (261)
Q Consensus 200 e~~vieGd~~aeaIv~~A~e~~aDLIVmGs 229 (261)
++..|++ .+.|.+++++++++.|+.-.
T Consensus 81 --~v~~G~~-~~vl~~L~~~~~a~~V~~n~ 107 (538)
T 3tvs_A 81 --LVFEGEP-AYIFRRLHEQVRLHRICIEQ 107 (538)
T ss_dssp --EEEESCH-HHHHHHHHHHHCEEEECEEC
T ss_pred --EEEeCCH-HHHHHHHHHHcCCCEEEEcc
Confidence 3456765 79999999999999998633
No 68
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=48.09 E-value=43 Score=27.48 Aligned_cols=49 Identities=8% Similarity=0.181 Sum_probs=33.8
Q ss_pred HHHHHHHhhcCCCcEEEEEEEcCChHHHHHHhhh---hCCCcEEEECCCCCC
Q 024855 185 LQKFLDTCSQSKVMVDTVLIESDLVAKAILDLIP---VLNIRKLVVGTTKSS 233 (261)
Q Consensus 185 Lek~~~~~~~~gV~ve~~vieGd~~aeaIv~~A~---e~~aDLIVmGsr~sg 233 (261)
++++...++..|++++..+..-+..-+.+.+|++ +.+++.||.|.-+.+
T Consensus 19 ~~~a~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa 70 (163)
T 3ors_A 19 MQESCNMLDYFEIPYEKQVVSAHRTPKMMVQFASEARERGINIIIAGAGGAA 70 (163)
T ss_dssp HHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSC
T ss_pred HHHHHHHHHHcCCCEEEEEECCcCCHHHHHHHHHHHHhCCCcEEEEECCchh
Confidence 4455666777799998776654444577766654 467898888877655
No 69
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A*
Probab=46.36 E-value=52 Score=30.16 Aligned_cols=35 Identities=6% Similarity=-0.102 Sum_probs=27.0
Q ss_pred CCCeEEEeecCChhHHHHHHHHHHHhcCCCCeEEEEEEe
Q 024855 109 EEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVF 147 (261)
Q Consensus 109 ~~kkILVaVDgSe~S~~AL~~Al~~A~~~ga~L~LLHVv 147 (261)
..++|+|++.|...|.-++.++. +.+-+|+.||+.
T Consensus 16 ~~~kVvVa~SGGvDSsv~a~lL~----~~G~~V~~v~~~ 50 (380)
T 2der_A 16 TAKKVIVGMSGGVDSSVSAWLLQ----QQGYQVEGLFMK 50 (380)
T ss_dssp -CCEEEEECCSCSTTHHHHHHHH----TTCCEEEEEEEE
T ss_pred CCCEEEEEEEChHHHHHHHHHHH----HcCCeEEEEEEE
Confidence 56799999999988887765543 347889999984
No 70
>2j4d_A Cryptochrome 3, cryptochrome DASH; DNA-binding protein, flavoprotein, FAD, mitochondrion, plastid, chromophore, chloroplast; HET: FAD MHF; 1.9A {Arabidopsis thaliana} PDB: 2vtb_A* 2ijg_X* 2vtb_B*
Probab=45.88 E-value=91 Score=29.69 Aligned_cols=102 Identities=10% Similarity=0.011 Sum_probs=58.2
Q ss_pred CeEEEee--cCChhHHHHHHHHHHHhcCCCCeEEEEEEecCCCCCCCCC-CCCCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 024855 111 DIIYVAV--GKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPL-GKLPRNQVNPEQLETFMAQETGKRRQLLQK 187 (261)
Q Consensus 111 kkILVaV--DgSe~S~~AL~~Al~~A~~~ga~L~LLHVv~~~~~~p~~~-g~~~~~~~~~e~~e~~~~~~~e~~~~~Lek 187 (261)
+.+||=. |.=-.-..||..|++. +..|..|.|+++........ +... ...... .-+.+-|+.
T Consensus 40 ~~~l~WfrrDLRl~DN~AL~~A~~~----~~~v~~vfi~dp~~~~~~~~~~~~~---~~~~r~--------~Fl~~sL~~ 104 (525)
T 2j4d_A 40 GVTILWFRNDLRVLDNDALYKAWSS----SDTILPVYCLDPRLFHTTHFFNFPK---TGALRG--------GFLMECLVD 104 (525)
T ss_dssp CEEEEEESSCCCSTTCHHHHHHHHT----CSEEEEEEEECGGGGSBCTTTCCBS---SCHHHH--------HHHHHHHHH
T ss_pred CeEEEEeCCCcCcchhHHHHHHHhc----CCcEEEEEEECchhhcccccccCCC---CCHHHH--------HHHHHHHHH
Confidence 4455544 4434556677776553 35799999998643210000 1000 111111 122334555
Q ss_pred HHHHhhcCCCcEEEEEEEcCChHHHHHHhhhhCCCcEEEECCC
Q 024855 188 FLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTT 230 (261)
Q Consensus 188 ~~~~~~~~gV~ve~~vieGd~~aeaIv~~A~e~~aDLIVmGsr 230 (261)
+.+.+++.|+++. +..|++ .+.|.+++++++++.|+.-..
T Consensus 105 L~~~L~~~G~~L~--v~~g~~-~~~l~~l~~~~~~~~V~~~~~ 144 (525)
T 2j4d_A 105 LRKNLMKRGLNLL--IRSGKP-EEILPSLAKDFGARTVFAHKE 144 (525)
T ss_dssp HHHHHHHTTCCCE--EEESCH-HHHHHHHHHHHTCSEEEEECC
T ss_pred HHHHHHHcCCeEE--EEeCCH-HHHHHHHHHHcCCCEEEEecc
Confidence 5555666677653 345654 799999999999999988654
No 71
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=44.69 E-value=16 Score=27.24 Aligned_cols=23 Identities=35% Similarity=0.443 Sum_probs=19.5
Q ss_pred ChHHHHHHhhhhCCCcEEEECCC
Q 024855 208 LVAKAILDLIPVLNIRKLVVGTT 230 (261)
Q Consensus 208 ~~aeaIv~~A~e~~aDLIVmGsr 230 (261)
...+.|.+++++++++.||+|--
T Consensus 38 ~~~~~l~~li~e~~v~~iVvGlP 60 (98)
T 1iv0_A 38 EDVEALLDFVRREGLGKLVVGLP 60 (98)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECC
T ss_pred HHHHHHHHHHHHcCCCEEEEeec
Confidence 34588999999999999999944
No 72
>1sbz_A Probable aromatic acid decarboxylase; FMN binding, PAD1, UBIX, montreal-kingston bacterial structu genomics initiative, BSGI; HET: FMN; 2.00A {Escherichia coli} SCOP: c.34.1.1
Probab=44.50 E-value=30 Score=28.99 Aligned_cols=35 Identities=9% Similarity=0.002 Sum_probs=27.5
Q ss_pred CeEEEeecCChhHHHHHHHHHHHhcCCCCeEEEEE
Q 024855 111 DIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIH 145 (261)
Q Consensus 111 kkILVaVDgSe~S~~AL~~Al~~A~~~ga~L~LLH 145 (261)
+||+|++-|+-.+.++++..-.+.+..|.+++++-
T Consensus 1 ~~IllgvTGsiaa~k~~~ll~~L~~~~g~~V~vv~ 35 (197)
T 1sbz_A 1 MKLIVGMTGATGAPLGVALLQALREMPNVETHLVM 35 (197)
T ss_dssp CEEEEEECSSSCHHHHHHHHHHHHTCTTCEEEEEE
T ss_pred CEEEEEEeChHHHHHHHHHHHHHHhccCCEEEEEE
Confidence 48999999999999999888666543378776663
No 73
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}
Probab=43.55 E-value=47 Score=29.78 Aligned_cols=38 Identities=13% Similarity=0.172 Sum_probs=29.8
Q ss_pred CeEEEeecCChhHHHHHHHHHHHhcCCCCeEEEEEEecC
Q 024855 111 DIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQ 149 (261)
Q Consensus 111 kkILVaVDgSe~S~~AL~~Al~~A~~~ga~L~LLHVv~~ 149 (261)
-+|||+++-.......++.|..+.. +.+-+++++|.+.
T Consensus 21 P~iLV~sg~p~~~~~li~la~~lt~-~~G~ltv~~i~p~ 58 (294)
T 3g40_A 21 ANLLVPVEDPRELMGTFDFLRDITY-PKGSVKLLGLAGN 58 (294)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHT-TTCEEEEEECC--
T ss_pred CcEEEecCCchhhhhHHHHHHHhcc-CceeEEEEEEccC
Confidence 3999999877788889999988775 5566999999654
No 74
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=43.18 E-value=79 Score=23.50 Aligned_cols=25 Identities=0% Similarity=0.060 Sum_probs=18.8
Q ss_pred CChHHHHHHhhhhCCCcEEEECCCCC
Q 024855 207 DLVAKAILDLIPVLNIRKLVVGTTKS 232 (261)
Q Consensus 207 d~~aeaIv~~A~e~~aDLIVmGsr~s 232 (261)
.. ++..++.+++..+|+|++...-.
T Consensus 38 ~~-~~~al~~l~~~~~dlii~D~~l~ 62 (154)
T 3gt7_A 38 RN-GREAVRFLSLTRPDLIISDVLMP 62 (154)
T ss_dssp SS-HHHHHHHHTTCCCSEEEEESCCS
T ss_pred CC-HHHHHHHHHhCCCCEEEEeCCCC
Confidence 44 36666777888999999998843
No 75
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=43.11 E-value=46 Score=27.56 Aligned_cols=49 Identities=4% Similarity=0.180 Sum_probs=33.4
Q ss_pred HHHHHHHhhcCCCcEEEEEEEcCChHHHHHHhh---hhCCCcEEEECCCCCC
Q 024855 185 LQKFLDTCSQSKVMVDTVLIESDLVAKAILDLI---PVLNIRKLVVGTTKSS 233 (261)
Q Consensus 185 Lek~~~~~~~~gV~ve~~vieGd~~aeaIv~~A---~e~~aDLIVmGsr~sg 233 (261)
++++...++..|++++..+..-+..-+.+.+++ ++.+++.||.|.-+.+
T Consensus 23 ~~~a~~~L~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa 74 (174)
T 3lp6_A 23 MADAAAALAEFDIPAEVRVVSAHRTPEAMFSYARGAAARGLEVIIAGAGGAA 74 (174)
T ss_dssp HHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHHHHHTCCEEEEEEESSC
T ss_pred HHHHHHHHHHcCCCEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEecCchh
Confidence 445556677779999877665444346666664 4568898888877655
No 76
>3qjg_A Epidermin biosynthesis protein EPID; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: FMN; 2.04A {Staphylococcus aureus} SCOP: c.34.1.0
Probab=42.61 E-value=28 Score=28.64 Aligned_cols=35 Identities=9% Similarity=0.130 Sum_probs=27.5
Q ss_pred CCeEEEeecCChhHHHHHHHHHHHhcCCCCeEEEEE
Q 024855 110 EDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIH 145 (261)
Q Consensus 110 ~kkILVaVDgSe~S~~AL~~Al~~A~~~ga~L~LLH 145 (261)
.+||+|++-|+-.+.+++++.-. +++.|.+++++-
T Consensus 5 ~k~IllgvTGs~aa~k~~~ll~~-L~~~g~~V~vv~ 39 (175)
T 3qjg_A 5 GENVLICLCGSVNSINISHYIIE-LKSKFDEVNVIA 39 (175)
T ss_dssp CCEEEEEECSSGGGGGHHHHHHH-HTTTCSEEEEEE
T ss_pred CCEEEEEEeCHHHHHHHHHHHHH-HHHCCCEEEEEE
Confidence 47999999999999999988654 455688766554
No 77
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=42.15 E-value=54 Score=27.36 Aligned_cols=49 Identities=4% Similarity=0.176 Sum_probs=33.1
Q ss_pred HHHHHHHhhcCCCcEEEEEEEcCChHHHHHHhhh---hCCCcEEEECCCCCC
Q 024855 185 LQKFLDTCSQSKVMVDTVLIESDLVAKAILDLIP---VLNIRKLVVGTTKSS 233 (261)
Q Consensus 185 Lek~~~~~~~~gV~ve~~vieGd~~aeaIv~~A~---e~~aDLIVmGsr~sg 233 (261)
++++...++..|++++..+..-...-+.+.++++ +.+++.||.|.-+.+
T Consensus 29 ~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa 80 (183)
T 1o4v_A 29 MKQAAEILEEFGIDYEITIVSAHRTPDRMFEYAKNAEERGIEVIIAGAGGAA 80 (183)
T ss_dssp HHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSC
T ss_pred HHHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEecCccc
Confidence 4455556677799988776644433466666655 457898888877655
No 78
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=40.53 E-value=83 Score=22.62 Aligned_cols=24 Identities=13% Similarity=0.052 Sum_probs=17.9
Q ss_pred CChHHHHHHhhhhCCCcEEEECCCC
Q 024855 207 DLVAKAILDLIPVLNIRKLVVGTTK 231 (261)
Q Consensus 207 d~~aeaIv~~A~e~~aDLIVmGsr~ 231 (261)
.. .+..++.+++..+|+||+...-
T Consensus 38 ~~-~~~a~~~l~~~~~dlii~d~~l 61 (142)
T 3cg4_A 38 DS-GGQCIDLLKKGFSGVVLLDIMM 61 (142)
T ss_dssp SS-HHHHHHHHHTCCCEEEEEESCC
T ss_pred CC-HHHHHHHHHhcCCCEEEEeCCC
Confidence 44 4666677777889999998874
No 79
>3zqu_A Probable aromatic acid decarboxylase; lyase; HET: FNR; 1.50A {Pseudomonas aeruginosa} SCOP: c.34.1.0
Probab=40.51 E-value=37 Score=28.68 Aligned_cols=36 Identities=8% Similarity=-0.009 Sum_probs=28.7
Q ss_pred CCCeEEEeecCChhHHHHHHHHHHHhcCCCCeEEEEE
Q 024855 109 EEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIH 145 (261)
Q Consensus 109 ~~kkILVaVDgSe~S~~AL~~Al~~A~~~ga~L~LLH 145 (261)
..+||+|++-|+-.+.++++..-.+.+ .|.+++++-
T Consensus 3 ~~k~IllgvTGaiaa~k~~~ll~~L~~-~g~eV~vv~ 38 (209)
T 3zqu_A 3 GPERITLAMTGASGAQYGLRLLDCLVQ-EEREVHFLI 38 (209)
T ss_dssp SCSEEEEEECSSSCHHHHHHHHHHHHH-TTCEEEEEE
T ss_pred CCCEEEEEEECHHHHHHHHHHHHHHHH-CCCEEEEEE
Confidence 458999999999999999998766544 588776654
No 80
>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin enzyme, photoreactivating enzyme; HET: FAD; 1.80A {Synechococcus elongatus} SCOP: a.99.1.1 c.28.1.1 PDB: 1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A*
Probab=40.47 E-value=49 Score=31.15 Aligned_cols=85 Identities=12% Similarity=0.104 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHhcCCCCeEEEEEEecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEE
Q 024855 123 SMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFLDTCSQSKVMVDTV 202 (261)
Q Consensus 123 S~~AL~~Al~~A~~~ga~L~LLHVv~~~~~~p~~~g~~~~~~~~~e~~e~~~~~~~e~~~~~Lek~~~~~~~~gV~ve~~ 202 (261)
-..||..|++.. ..|..|.|+++... +... ...... . -+.+-|+.+.+.+++.|++..
T Consensus 17 Dn~aL~~A~~~~----~~v~~vfi~dp~~~-----~~~~---~~~~r~-~-------fl~~sL~~L~~~L~~~G~~L~-- 74 (484)
T 1owl_A 17 DNIGLAAARAQS----AQLIGLFCLDPQIL-----QSAD---MAPARV-A-------YLQGCLQELQQRYQQAGSRLL-- 74 (484)
T ss_dssp SCHHHHHHHHHC----SCEEEEEEECHHHH-----TCTT---CCHHHH-H-------HHHHHHHHHHHHHHHHTSCEE--
T ss_pred hhHHHHHHHhcC----CCEEEEEEEcchhh-----cCCC---CCHHHH-H-------HHHHHHHHHHHHHHHCCCeEE--
Confidence 345677766532 36889999876421 1000 011111 1 122334444445555577653
Q ss_pred EEEcCChHHHHHHhhhhCCCcEEEECCC
Q 024855 203 LIESDLVAKAILDLIPVLNIRKLVVGTT 230 (261)
Q Consensus 203 vieGd~~aeaIv~~A~e~~aDLIVmGsr 230 (261)
+..|+ +.+.|.+++++++++.|+.-..
T Consensus 75 v~~g~-~~~~l~~l~~~~~~~~v~~~~~ 101 (484)
T 1owl_A 75 LLQGD-PQHLIPQLAQQLQAEAVYWNQD 101 (484)
T ss_dssp EEESC-HHHHHHHHHHHTTCSEEEEECC
T ss_pred EEeCC-HHHHHHHHHHHcCCCEEEEecc
Confidence 34565 4799999999999999988544
No 81
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=40.08 E-value=83 Score=21.33 Aligned_cols=22 Identities=14% Similarity=0.185 Sum_probs=16.8
Q ss_pred HHHHHHhhhhCCCcEEEECCCC
Q 024855 210 AKAILDLIPVLNIRKLVVGTTK 231 (261)
Q Consensus 210 aeaIv~~A~e~~aDLIVmGsr~ 231 (261)
.+...+...+..+|+|++...-
T Consensus 34 ~~~~~~~l~~~~~dlii~d~~~ 55 (119)
T 2j48_A 34 GSTALDQLDLLQPIVILMAWPP 55 (119)
T ss_dssp HHHHHHHHHHHCCSEEEEECST
T ss_pred HHHHHHHHHhcCCCEEEEecCC
Confidence 3566667777789999998874
No 82
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=39.77 E-value=82 Score=22.20 Aligned_cols=46 Identities=2% Similarity=-0.130 Sum_probs=28.3
Q ss_pred CChHHHHHHhhhhCCCcEEEECCCCCCcccccccceeccHHHHHhc---cCCcceee
Q 024855 207 DLVAKAILDLIPVLNIRKLVVGTTKSSLRFHFHSINFNGIGTLILF---YFSILLFC 260 (261)
Q Consensus 207 d~~aeaIv~~A~e~~aDLIVmGsr~sgl~~~~r~l~lGSVA~~Vlr---~A~ipv~~ 260 (261)
.. ++..++...+..+|+|++...-.+... -.+..++-+ ...+||++
T Consensus 34 ~~-~~~a~~~l~~~~~dlii~D~~l~~~~g-------~~~~~~l~~~~~~~~~~ii~ 82 (127)
T 3i42_A 34 MS-GTDALHAMSTRGYDAVFIDLNLPDTSG-------LALVKQLRALPMEKTSKFVA 82 (127)
T ss_dssp SS-HHHHHHHHHHSCCSEEEEESBCSSSBH-------HHHHHHHHHSCCSSCCEEEE
T ss_pred CC-HHHHHHHHHhcCCCEEEEeCCCCCCCH-------HHHHHHHHhhhccCCCCEEE
Confidence 44 466667777888999999988433221 123444444 35677765
No 83
>2ejb_A Probable aromatic acid decarboxylase; phenylacrylic acid decarboxylase, X-RAY diffraction, structural genomics, NPPSFA; 2.15A {Aquifex aeolicus}
Probab=39.07 E-value=41 Score=27.84 Aligned_cols=34 Identities=6% Similarity=-0.040 Sum_probs=27.0
Q ss_pred CeEEEeecCChhHHHHHHHHHHHhcCCCCeEEEEE
Q 024855 111 DIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIH 145 (261)
Q Consensus 111 kkILVaVDgSe~S~~AL~~Al~~A~~~ga~L~LLH 145 (261)
+||+|++-|+-.+.++++..-.+.+ .|.+++++-
T Consensus 2 k~IllgvTGs~aa~k~~~l~~~L~~-~g~~V~vv~ 35 (189)
T 2ejb_A 2 QKIALCITGASGVIYGIKLLQVLEE-LDFSVDLVI 35 (189)
T ss_dssp CEEEEEECSSTTHHHHHHHHHHHHH-TTCEEEEEE
T ss_pred CEEEEEEECHHHHHHHHHHHHHHHH-CCCEEEEEE
Confidence 6999999999999999998766654 477776653
No 84
>2e0i_A 432AA long hypothetical deoxyribodipyrimidine PHO; photolyase, FAD, DNA repair, lyase; HET: FAD; 2.80A {Sulfolobus tokodaii}
Probab=38.60 E-value=68 Score=29.93 Aligned_cols=83 Identities=8% Similarity=0.148 Sum_probs=48.5
Q ss_pred HHHHHHHHHHhcCCCCeEEEEEEecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEE
Q 024855 124 MDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFLDTCSQSKVMVDTVL 203 (261)
Q Consensus 124 ~~AL~~Al~~A~~~ga~L~LLHVv~~~~~~p~~~g~~~~~~~~~e~~e~~~~~~~e~~~~~Lek~~~~~~~~gV~ve~~v 203 (261)
..||..|++. +..|..|+|+++...... + ....... .-+.+-|+.+.+.+++.|++.. +
T Consensus 16 N~aL~~A~~~----~~~v~~vfi~dp~~~~~~-----~--~~~~~r~--------~Fl~~sL~~L~~~L~~~G~~L~--v 74 (440)
T 2e0i_A 16 NTGLNYALSE----CDRVIPVFIADPRQLINN-----P--YKSEFAV--------SFMINSLLELDDELRKKGSRLN--V 74 (440)
T ss_dssp CHHHHHHHHH----SSEEEEEEEECHHHHSSC-----T--TCCHHHH--------HHHHHHHHHHHHHHHTTTCCCE--E
T ss_pred hHHHHHHHhc----CCCEEEEEEeChhhhccC-----C--cCCHHHH--------HHHHHHHHHHHHHHHHcCCeEE--E
Confidence 3567666653 567999999976421000 0 0111111 1223345555556666777653 3
Q ss_pred EEcCChHHHHHHhhhhCCCcEEEECCC
Q 024855 204 IESDLVAKAILDLIPVLNIRKLVVGTT 230 (261)
Q Consensus 204 ieGd~~aeaIv~~A~e~~aDLIVmGsr 230 (261)
..|+ +.+.|.++++ +++.|+.-..
T Consensus 75 ~~g~-~~~~l~~l~~--~~~~v~~~~~ 98 (440)
T 2e0i_A 75 FFGE-AEKVVSRFFN--KVDAIYVNED 98 (440)
T ss_dssp EESC-HHHHHHHHCT--TCSEEEEECC
T ss_pred EECC-HHHHHHHHHc--CCCEEEEecc
Confidence 4565 4799999998 9999887544
No 85
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=38.48 E-value=96 Score=21.38 Aligned_cols=43 Identities=7% Similarity=0.059 Sum_probs=25.5
Q ss_pred HHHHHhhhhCCCcEEEECCCCCCcccccccceeccHHHHHhccCCcceee
Q 024855 211 KAILDLIPVLNIRKLVVGTTKSSLRFHFHSINFNGIGTLILFYFSILLFC 260 (261)
Q Consensus 211 eaIv~~A~e~~aDLIVmGsr~sgl~~~~r~l~lGSVA~~Vlr~A~ipv~~ 260 (261)
+..++...+..+|+|++.-.-.+... + .+..++-+..++|+++
T Consensus 35 ~~a~~~~~~~~~dlvl~D~~l~~~~g----~---~~~~~l~~~~~~~ii~ 77 (120)
T 2a9o_A 35 REALEQFEAEQPDIIILDLMLPEIDG----L---EVAKTIRKTSSVPILM 77 (120)
T ss_dssp HHHHHHHHHHCCSEEEECSSCSSSCH----H---HHHHHHHHHCCCCEEE
T ss_pred HHHHHHHHhCCCCEEEEeccCCCCCH----H---HHHHHHHhCCCCCEEE
Confidence 45556666778999999987433221 1 2334444445677765
No 86
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Probab=38.37 E-value=1.2e+02 Score=25.90 Aligned_cols=94 Identities=12% Similarity=0.099 Sum_probs=50.1
Q ss_pred CeEEEeecCChhHHHHHHHHHHHhcCCCCeEEEEEEecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 024855 111 DIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFLD 190 (261)
Q Consensus 111 kkILVaVDgSe~S~~AL~~Al~~A~~~ga~L~LLHVv~~~~~~p~~~g~~~~~~~~~e~~e~~~~~~~e~~~~~Lek~~~ 190 (261)
+|++|.+.|...|.-|+-++.+ .|-++..|+..-+... ..... .... ++.+..
T Consensus 5 MKvvvl~SGGkDSs~al~~l~~----~G~eV~~L~~~~~~~~----~s~~~-h~~~------------------~e~a~~ 57 (237)
T 3rjz_A 5 ADVAVLYSGGKDSNYALYWAIK----NRFSVKFLVTMVSENE----ESYMY-HTIN------------------ANLTDL 57 (237)
T ss_dssp SEEEEECCSSHHHHHHHHHHHH----TTCEEEEEEEEECC-------------CCS------------------SSHHHH
T ss_pred CEEEEEecCcHHHHHHHHHHHH----cCCeEEEEEEEcCCCC----Ccccc-CCcc------------------HHHHHH
Confidence 6999999999999877766543 4667776654322110 00000 0000 011112
Q ss_pred HhhcCCCcEEEEEEEcC---ChHHHHHHhhhhCCCcEEEECCCCC
Q 024855 191 TCSQSKVMVDTVLIESD---LVAKAILDLIPVLNIRKLVVGTTKS 232 (261)
Q Consensus 191 ~~~~~gV~ve~~vieGd---~~aeaIv~~A~e~~aDLIVmGsr~s 232 (261)
.|+..|++...+-+.|. - -+.+.+..++.+++.+|.|.--+
T Consensus 58 ~A~~LGIpl~~v~~~g~~~~e-~e~l~~~l~~~~i~~vv~Gdi~s 101 (237)
T 3rjz_A 58 QARALGIPLVKGFTQGEKEKE-VEDLKRVLSGLKIQGIVAGALAS 101 (237)
T ss_dssp HHHHHTCCEEEEEC------C-HHHHHHHHTTSCCSEEECC---C
T ss_pred HHHHcCCCEEEEECCCCchHH-HHHHHHHHHhcCCcEEEECCcch
Confidence 34445777654434332 3 36677777788999999998743
No 87
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=36.82 E-value=80 Score=26.65 Aligned_cols=86 Identities=10% Similarity=0.029 Sum_probs=51.7
Q ss_pred CCCeEEEeecCChhHHHHHHHHHHHhcCCCCeEEEEEEecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 024855 109 EEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKF 188 (261)
Q Consensus 109 ~~kkILVaVDgSe~S~~AL~~Al~~A~~~ga~L~LLHVv~~~~~~p~~~g~~~~~~~~~e~~e~~~~~~~e~~~~~Lek~ 188 (261)
+.+||.|-+.|+.....|+-.++. ..+-..-++-|+..... . . .
T Consensus 7 ~~~ri~vl~SG~gsnl~all~~~~---~~~~~~~I~~Vis~~~~---a---------~-~-------------------- 50 (215)
T 3kcq_A 7 KELRVGVLISGRGSNLEALAKAFS---TEESSVVISCVISNNAE---A---------R-G-------------------- 50 (215)
T ss_dssp CCEEEEEEESSCCHHHHHHHHHTC---CC-CSEEEEEEEESCTT---C---------T-H--------------------
T ss_pred CCCEEEEEEECCcHHHHHHHHHHH---cCCCCcEEEEEEeCCcc---h---------H-H--------------------
Confidence 456899999999888888766542 22222344445543210 0 0 0
Q ss_pred HHHhhcCCCcEEEEEEEcCChHHHHHHhhhhCCCcEEEECCCC
Q 024855 189 LDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTTK 231 (261)
Q Consensus 189 ~~~~~~~gV~ve~~vieGd~~aeaIv~~A~e~~aDLIVmGsr~ 231 (261)
.+.+++.|+++...-...-. .+++++..+++++|+||+....
T Consensus 51 l~~A~~~gIp~~~~~~~~~~-~~~~~~~L~~~~~Dlivlagy~ 92 (215)
T 3kcq_A 51 LLIAQSYGIPTFVVKRKPLD-IEHISTVLREHDVDLVCLAGFM 92 (215)
T ss_dssp HHHHHHTTCCEEECCBTTBC-HHHHHHHHHHTTCSEEEESSCC
T ss_pred HHHHHHcCCCEEEeCcccCC-hHHHHHHHHHhCCCEEEEeCCc
Confidence 12356678886532111111 3789999999999999998763
No 88
>1g63_A Epidermin modifying enzyme EPID; alpha, beta protein, rossmann like fold, oxidoreductase; HET: FMN; 2.50A {Staphylococcus epidermidis} SCOP: c.34.1.1 PDB: 1g5q_A*
Probab=36.58 E-value=32 Score=28.36 Aligned_cols=35 Identities=3% Similarity=0.029 Sum_probs=28.0
Q ss_pred CCeEEEeecCChhHHHHHHHHHHHhcCCCCeEEEEE
Q 024855 110 EDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIH 145 (261)
Q Consensus 110 ~kkILVaVDgSe~S~~AL~~Al~~A~~~ga~L~LLH 145 (261)
.+||+|++-|+-.+.+++++.-.+ ++.|.+++++-
T Consensus 2 ~k~IllgvTGs~aa~k~~~l~~~L-~~~g~~V~vv~ 36 (181)
T 1g63_A 2 YGKLLICATASINVININHYIVEL-KQHFDEVNILF 36 (181)
T ss_dssp CCCEEEEECSCGGGGGHHHHHHHH-TTTSSCEEEEE
T ss_pred CCEEEEEEECHHHHHHHHHHHHHH-HHCCCEEEEEE
Confidence 469999999999999999887655 45577776664
No 89
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=35.97 E-value=1.2e+02 Score=21.86 Aligned_cols=47 Identities=4% Similarity=-0.168 Sum_probs=25.9
Q ss_pred CChHHHHHHhhhhCCCcEEEECCCC-CCcccccccceeccHHHHHhccCCcceee
Q 024855 207 DLVAKAILDLIPVLNIRKLVVGTTK-SSLRFHFHSINFNGIGTLILFYFSILLFC 260 (261)
Q Consensus 207 d~~aeaIv~~A~e~~aDLIVmGsr~-sgl~~~~r~l~lGSVA~~Vlr~A~ipv~~ 260 (261)
....+++..+.+...+|+|++...- .|... -.+...+-+...+||++
T Consensus 36 ~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g-------~~~~~~l~~~~~~~ii~ 83 (140)
T 3h5i_A 36 LTGEAAVEKVSGGWYPDLILMDIELGEGMDG-------VQTALAIQQISELPVVF 83 (140)
T ss_dssp SSHHHHHHHHHTTCCCSEEEEESSCSSSCCH-------HHHHHHHHHHCCCCEEE
T ss_pred cChHHHHHHHhcCCCCCEEEEeccCCCCCCH-------HHHHHHHHhCCCCCEEE
Confidence 3434444444344789999999873 23221 12344444456777765
No 90
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=35.81 E-value=1.4e+02 Score=25.18 Aligned_cols=85 Identities=13% Similarity=0.118 Sum_probs=51.6
Q ss_pred CCCeEEEeecCChhHHHHHHHHHHHhcCCCCeEEEEEEecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 024855 109 EEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKF 188 (261)
Q Consensus 109 ~~kkILVaVDgSe~S~~AL~~Al~~A~~~ga~L~LLHVv~~~~~~p~~~g~~~~~~~~~e~~e~~~~~~~e~~~~~Lek~ 188 (261)
..+||.|-+.|+.....||-.+.+.- .+.+|.+ |+.... +. ..
T Consensus 4 ~~~riavl~SG~Gsnl~all~~~~~~--~~~eI~~--Vis~~~----------------~a-~~---------------- 46 (215)
T 3tqr_A 4 EPLPIVVLISGNGTNLQAIIGAIQKG--LAIEIRA--VISNRA----------------DA-YG---------------- 46 (215)
T ss_dssp CCEEEEEEESSCCHHHHHHHHHHHTT--CSEEEEE--EEESCT----------------TC-HH----------------
T ss_pred CCcEEEEEEeCCcHHHHHHHHHHHcC--CCCEEEE--EEeCCc----------------ch-HH----------------
Confidence 35689999999998888887775432 3444444 443211 00 00
Q ss_pred HHHhhcCCCcEEEEEEEc-CC---hHHHHHHhhhhCCCcEEEECCC
Q 024855 189 LDTCSQSKVMVDTVLIES-DL---VAKAILDLIPVLNIRKLVVGTT 230 (261)
Q Consensus 189 ~~~~~~~gV~ve~~vieG-d~---~aeaIv~~A~e~~aDLIVmGsr 230 (261)
.+.+++.|+++...-... .. -.+++++..+++++|+||+...
T Consensus 47 ~~~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dliv~agy 92 (215)
T 3tqr_A 47 LKRAQQADIPTHIIPHEEFPSRTDFESTLQKTIDHYDPKLIVLAGF 92 (215)
T ss_dssp HHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHTTCCSEEEESSC
T ss_pred HHHHHHcCCCEEEeCccccCchhHhHHHHHHHHHhcCCCEEEEccc
Confidence 123566788864320000 11 1357899999999999999876
No 91
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=35.42 E-value=1.2e+02 Score=21.61 Aligned_cols=44 Identities=11% Similarity=0.043 Sum_probs=26.9
Q ss_pred HHHHHHhhhhCCCcEEEECCCCCCcccccccceeccHHHHHhc---cCCcceee
Q 024855 210 AKAILDLIPVLNIRKLVVGTTKSSLRFHFHSINFNGIGTLILF---YFSILLFC 260 (261)
Q Consensus 210 aeaIv~~A~e~~aDLIVmGsr~sgl~~~~r~l~lGSVA~~Vlr---~A~ipv~~ 260 (261)
.+..++..++..+|+|++...-.+... + .+..++-+ ...+||++
T Consensus 43 ~~~a~~~l~~~~~dlii~d~~l~~~~g----~---~~~~~l~~~~~~~~~~ii~ 89 (143)
T 3cnb_A 43 PFDAGDLLHTVKPDVVMLDLMMVGMDG----F---SICHRIKSTPATANIIVIA 89 (143)
T ss_dssp HHHHHHHHHHTCCSEEEEETTCTTSCH----H---HHHHHHHTSTTTTTSEEEE
T ss_pred HHHHHHHHHhcCCCEEEEecccCCCcH----H---HHHHHHHhCccccCCcEEE
Confidence 366667777788999999987433221 1 23444443 35677764
No 92
>1dnp_A DNA photolyase; DNA repair, electron transfer, excitation energy transfer, carbon-carbon, lyase (carbon-carbon); HET: DNA FAD MHF; 2.30A {Escherichia coli} SCOP: a.99.1.1 c.28.1.1
Probab=35.30 E-value=52 Score=30.93 Aligned_cols=47 Identities=4% Similarity=-0.053 Sum_probs=31.7
Q ss_pred HHHHHHHHHhhcCCCcEEEEEE--EcCChHHHHHHhhhhCCCcEEEECCC
Q 024855 183 QLLQKFLDTCSQSKVMVDTVLI--ESDLVAKAILDLIPVLNIRKLVVGTT 230 (261)
Q Consensus 183 ~~Lek~~~~~~~~gV~ve~~vi--eGd~~aeaIv~~A~e~~aDLIVmGsr 230 (261)
+-|+.+.+.+++.|++....-+ .|+ +.+.|.+++++++++.|+.-..
T Consensus 56 ~sL~~L~~~L~~~G~~L~v~~~~~~g~-~~~~l~~l~~~~~~~~v~~~~~ 104 (471)
T 1dnp_A 56 AQLNGLQIALAEKGIPLLFREVDDFVA-SVEIVKQVCAENSVTHLFYNYQ 104 (471)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECSSHHH-HHHHHHHHHHHHTCCEEEEECC
T ss_pred HHHHHHHHHHHHCCCeEEEEEccCCCC-HHHHHHHHHHHcCCCEEEEecc
Confidence 3455555556667877632211 455 4799999999999999988544
No 93
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Probab=34.88 E-value=1.7e+02 Score=27.77 Aligned_cols=35 Identities=11% Similarity=0.041 Sum_probs=28.4
Q ss_pred CCeEEEeecCChhHHHHHHHHHHHhcCCCCeEEEEEEe
Q 024855 110 EDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVF 147 (261)
Q Consensus 110 ~kkILVaVDgSe~S~~AL~~Al~~A~~~ga~L~LLHVv 147 (261)
.++++|++.|...|.-++.++.+.. |.+++.+|+-
T Consensus 227 ~~~vvvalSGGvDSsv~a~ll~~a~---G~~v~av~v~ 261 (525)
T 1gpm_A 227 DDKVILGLSGGVDSSVTAMLLHRAI---GKNLTCVFVD 261 (525)
T ss_dssp TCEEEEECCSSHHHHHHHHHHHHHH---GGGEEEEEEE
T ss_pred ccceEEEecCCCCHHHHHHHHHHHh---CCCEEEEEEe
Confidence 3799999999999988887776543 4679999985
No 94
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=34.56 E-value=1.7e+02 Score=25.63 Aligned_cols=85 Identities=8% Similarity=0.102 Sum_probs=53.0
Q ss_pred CCCeEEEeecCChhHHHHHHHHHHHhcCCCCeEEEEEEecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 024855 109 EEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKF 188 (261)
Q Consensus 109 ~~kkILVaVDgSe~S~~AL~~Al~~A~~~ga~L~LLHVv~~~~~~p~~~g~~~~~~~~~e~~e~~~~~~~e~~~~~Lek~ 188 (261)
..+||.|-+.|+.++..||=++.+.- ..+++|.+|- .... + +
T Consensus 89 ~~~ri~vl~Sg~g~~l~~ll~~~~~g-~l~~~i~~Vi--sn~~----------------~------------~------- 130 (286)
T 3n0v_A 89 HRPKVVIMVSKADHCLNDLLYRQRIG-QLGMDVVAVV--SNHP----------------D------------L------- 130 (286)
T ss_dssp CCCEEEEEESSCCHHHHHHHHHHHTT-SSCCEEEEEE--ESSS----------------T------------T-------
T ss_pred CCcEEEEEEeCCCCCHHHHHHHHHCC-CCCcEEEEEE--eCcH----------------H------------H-------
Confidence 46799999999999999988875432 2345555543 2211 0 0
Q ss_pred HHHhhcCCCcEEEEEEEcCCh---HHHHHHhhhhCCCcEEEECCCC
Q 024855 189 LDTCSQSKVMVDTVLIESDLV---AKAILDLIPVLNIRKLVVGTTK 231 (261)
Q Consensus 189 ~~~~~~~gV~ve~~vieGd~~---aeaIv~~A~e~~aDLIVmGsr~ 231 (261)
...+++.|+++...-...... .+++++..+++++|+||+....
T Consensus 131 ~~~A~~~gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~Dlivla~y~ 176 (286)
T 3n0v_A 131 EPLAHWHKIPYYHFALDPKDKPGQERKVLQVIEETGAELVILARYM 176 (286)
T ss_dssp HHHHHHTTCCEEECCCBTTBHHHHHHHHHHHHHHHTCSEEEESSCC
T ss_pred HHHHHHcCCCEEEeCCCcCCHHHHHHHHHHHHHhcCCCEEEecccc
Confidence 012456688875321111111 2478999999999999998773
No 95
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=33.98 E-value=1.3e+02 Score=21.54 Aligned_cols=22 Identities=14% Similarity=0.095 Sum_probs=17.6
Q ss_pred HHHHHHhhhhCCCcEEEECCCC
Q 024855 210 AKAILDLIPVLNIRKLVVGTTK 231 (261)
Q Consensus 210 aeaIv~~A~e~~aDLIVmGsr~ 231 (261)
++..++.+++..+|+|++...-
T Consensus 39 ~~~a~~~l~~~~~dlvi~d~~l 60 (140)
T 3grc_A 39 AAQALEQVARRPYAAMTVDLNL 60 (140)
T ss_dssp HHHHHHHHHHSCCSEEEECSCC
T ss_pred HHHHHHHHHhCCCCEEEEeCCC
Confidence 4666677788899999999883
No 96
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=33.98 E-value=1.7e+02 Score=24.49 Aligned_cols=84 Identities=12% Similarity=-0.014 Sum_probs=50.7
Q ss_pred CCCeEEEeecCChhHHHHHHHHHHHhcCCCCeEEEEEEecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 024855 109 EEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKF 188 (261)
Q Consensus 109 ~~kkILVaVDgSe~S~~AL~~Al~~A~~~ga~L~LLHVv~~~~~~p~~~g~~~~~~~~~e~~e~~~~~~~e~~~~~Lek~ 188 (261)
..+||.|-+.|+.....||-.+... ..+.+|.+| +..... ..
T Consensus 11 ~~~ri~vl~SG~gsnl~all~~~~~--~~~~eI~~V--is~~~a----------------------------------~~ 52 (215)
T 3da8_A 11 APARLVVLASGTGSLLRSLLDAAVG--DYPARVVAV--GVDREC----------------------------------RA 52 (215)
T ss_dssp SSEEEEEEESSCCHHHHHHHHHSST--TCSEEEEEE--EESSCC----------------------------------HH
T ss_pred CCcEEEEEEeCChHHHHHHHHHHhc--cCCCeEEEE--EeCCch----------------------------------HH
Confidence 4568999999998888887666421 234455444 332110 01
Q ss_pred HHHhhcCCCcEEEEEEE-cCC---hHHHHHHhhhhCCCcEEEECCC
Q 024855 189 LDTCSQSKVMVDTVLIE-SDL---VAKAILDLIPVLNIRKLVVGTT 230 (261)
Q Consensus 189 ~~~~~~~gV~ve~~vie-Gd~---~aeaIv~~A~e~~aDLIVmGsr 230 (261)
.+.|++.|+++...-.. ... -.+++++..+++++|+||+...
T Consensus 53 ~~~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dlivlagy 98 (215)
T 3da8_A 53 AEIAAEASVPVFTVRLADHPSRDAWDVAITAATAAHEPDLVVSAGF 98 (215)
T ss_dssp HHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHTTCCSEEEEEEC
T ss_pred HHHHHHcCCCEEEeCcccccchhhhhHHHHHHHHhhCCCEEEEcCc
Confidence 23456678886532100 011 1357889999999999999765
No 97
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=33.91 E-value=1.7e+02 Score=25.92 Aligned_cols=84 Identities=7% Similarity=0.066 Sum_probs=52.8
Q ss_pred CCCeEEEeecCChhHHHHHHHHHHHhcCCCCeEEEEEEecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 024855 109 EEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKF 188 (261)
Q Consensus 109 ~~kkILVaVDgSe~S~~AL~~Al~~A~~~ga~L~LLHVv~~~~~~p~~~g~~~~~~~~~e~~e~~~~~~~e~~~~~Lek~ 188 (261)
..+||.|-+.++..+.+||=++.+.- ..+++|.+|- .... + +
T Consensus 104 ~~~ri~vl~Sg~g~nl~~ll~~~~~g-~l~~~I~~Vi--sn~~----------------~-------------------~ 145 (302)
T 3o1l_A 104 QKKRVVLMASRESHCLADLLHRWHSD-ELDCDIACVI--SNHQ----------------D-------------------L 145 (302)
T ss_dssp SCCEEEEEECSCCHHHHHHHHHHHTT-CSCSEEEEEE--ESSS----------------T-------------------T
T ss_pred CCcEEEEEEeCCchhHHHHHHHHHCC-CCCcEEEEEE--ECcH----------------H-------------------H
Confidence 46799999999988888888875532 2345555443 2210 0 0
Q ss_pred HHHhhcCCCcEEEEEEEc-CC--hHHHHHHhhhhCCCcEEEECCC
Q 024855 189 LDTCSQSKVMVDTVLIES-DL--VAKAILDLIPVLNIRKLVVGTT 230 (261)
Q Consensus 189 ~~~~~~~gV~ve~~vieG-d~--~aeaIv~~A~e~~aDLIVmGsr 230 (261)
.+.+++.|+++...-... .. -.+++++..+++++|+||+...
T Consensus 146 ~~~A~~~gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~DliVlagy 190 (302)
T 3o1l_A 146 RSMVEWHDIPYYHVPVDPKDKEPAFAEVSRLVGHHQADVVVLARY 190 (302)
T ss_dssp HHHHHTTTCCEEECCCCSSCCHHHHHHHHHHHHHTTCSEEEESSC
T ss_pred HHHHHHcCCCEEEcCCCcCCHHHHHHHHHHHHHHhCCCEEEHhHh
Confidence 012456788875321111 11 1257899999999999999877
No 98
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=33.72 E-value=1.2e+02 Score=25.15 Aligned_cols=66 Identities=11% Similarity=0.069 Sum_probs=37.6
Q ss_pred HHHHHHHhhcCCCcEEEEEEEcCChHHHHHHhhhhCCCcEEEECCCCCCcccccccceeccHHHHHhccCCcceeeC
Q 024855 185 LQKFLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTTKSSLRFHFHSINFNGIGTLILFYFSILLFCF 261 (261)
Q Consensus 185 Lek~~~~~~~~gV~ve~~vieGd~~aeaIv~~A~e~~aDLIVmGsr~sgl~~~~r~l~lGSVA~~Vlr~A~ipv~~~ 261 (261)
++.+.+.+++.|+.+.............+++.....++|-||+-.....- . .-.-++...+||++|
T Consensus 29 ~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~-~----------~~~~l~~~~iPvV~~ 94 (294)
T 3qk7_A 29 ISWIGIELGKRGLDLLLIPDEPGEKYQSLIHLVETRRVDALIVAHTQPED-F----------RLQYLQKQNFPFLAL 94 (294)
T ss_dssp HHHHHHHHHHTTCEEEEEEECTTCCCHHHHHHHHHTCCSEEEECSCCSSC-H----------HHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHCCCEEEEEeCCChhhHHHHHHHHHcCCCCEEEEeCCCCCh-H----------HHHHHHhCCCCEEEE
Confidence 33344445666776654433222224677888888899999986653211 1 112345667888764
No 99
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=33.05 E-value=87 Score=25.93 Aligned_cols=60 Identities=10% Similarity=0.042 Sum_probs=32.7
Q ss_pred HhhcCCCcEEEEEEEc-CCh--HHHHHHhhhhCCCcEEEECCCCCC-cccccccceeccHHHHHhccCCcceeeC
Q 024855 191 TCSQSKVMVDTVLIES-DLV--AKAILDLIPVLNIRKLVVGTTKSS-LRFHFHSINFNGIGTLILFYFSILLFCF 261 (261)
Q Consensus 191 ~~~~~gV~ve~~vieG-d~~--aeaIv~~A~e~~aDLIVmGsr~sg-l~~~~r~l~lGSVA~~Vlr~A~ipv~~~ 261 (261)
.+++.|+.+......+ .+. ...+++.....++|-||+...... +.. ...+ ++ ..+||+++
T Consensus 30 ~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~---------~~~~-~~-~~iPvV~~ 93 (304)
T 3o1i_D 30 EAEKQGVNLRVLEAGGYPNKSRQEQQLALCTQWGANAIILGTVDPHAYEH---------NLKS-WV-GNTPVFAT 93 (304)
T ss_dssp HHHHHTCEEEEEECSSTTCHHHHHHHHHHHHHHTCSEEEECCSSTTSSTT---------THHH-HT-TTSCEEEC
T ss_pred HHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHH---------HHHH-Hc-CCCCEEEe
Confidence 3444577665432222 032 234556566678999998866332 222 1222 34 78998875
No 100
>1p3y_1 MRSD protein; flavoprotein, FMN, rossmann fold, HFCD family, oxdidative decarboxylation, cystein, lantibiotics, mersacidin, oxidore; HET: FAD; 2.54A {Bacillus SP} SCOP: c.34.1.1
Probab=32.93 E-value=39 Score=28.11 Aligned_cols=35 Identities=17% Similarity=0.120 Sum_probs=27.8
Q ss_pred CCeEEEeecCChhHHHHHHHHHHHhcCCCCeEEEEE
Q 024855 110 EDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIH 145 (261)
Q Consensus 110 ~kkILVaVDgSe~S~~AL~~Al~~A~~~ga~L~LLH 145 (261)
.+||+|++-|+-.+.+++++.-.+ ++.|.+++++-
T Consensus 8 ~k~IllgvTGs~aa~k~~~l~~~L-~~~g~~V~vv~ 42 (194)
T 1p3y_1 8 DKKLLIGICGSISSVGISSYLLYF-KSFFKEIRVVM 42 (194)
T ss_dssp GCEEEEEECSCGGGGGTHHHHHHH-TTTSSEEEEEE
T ss_pred CCEEEEEEECHHHHHHHHHHHHHH-HHCCCEEEEEE
Confidence 479999999999999999887555 55687776653
No 101
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=32.68 E-value=98 Score=25.52 Aligned_cols=64 Identities=9% Similarity=-0.015 Sum_probs=32.6
Q ss_pred HHHHHhhcCCCcEEEEEEEcCChH--HHHHHhhhhCCCcEEEECCCC-CCcccccccceeccHHHHHhccCCcceeeC
Q 024855 187 KFLDTCSQSKVMVDTVLIESDLVA--KAILDLIPVLNIRKLVVGTTK-SSLRFHFHSINFNGIGTLILFYFSILLFCF 261 (261)
Q Consensus 187 k~~~~~~~~gV~ve~~vieGd~~a--eaIv~~A~e~~aDLIVmGsr~-sgl~~~~r~l~lGSVA~~Vlr~A~ipv~~~ 261 (261)
.+.+.+++.|+.+..... ..+.. ...++.....++|-||+.... ..... . -+-++...+||+++
T Consensus 29 gi~~~a~~~g~~~~~~~~-~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~---------~-~~~~~~~~iPvV~~ 95 (293)
T 3l6u_A 29 AFKAEAKANKYEALVATS-QNSRISEREQILEFVHLKVDAIFITTLDDVYIGS---------A-IEEAKKAGIPVFAI 95 (293)
T ss_dssp HHHHHHHHTTCEEEEEEC-SSCHHHHHHHHHHHHHTTCSEEEEECSCTTTTHH---------H-HHHHHHTTCCEEEE
T ss_pred HHHHHHHHcCCEEEEECC-CCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHH---------H-HHHHHHcCCCEEEe
Confidence 333445556776653322 22322 244555556789988885542 22111 1 12344567888764
No 102
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=32.31 E-value=2.1e+02 Score=25.16 Aligned_cols=85 Identities=11% Similarity=0.119 Sum_probs=53.6
Q ss_pred CCCeEEEeecCChhHHHHHHHHHHHhcCCCCeEEEEEEecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 024855 109 EEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKF 188 (261)
Q Consensus 109 ~~kkILVaVDgSe~S~~AL~~Al~~A~~~ga~L~LLHVv~~~~~~p~~~g~~~~~~~~~e~~e~~~~~~~e~~~~~Lek~ 188 (261)
..+||.|-+.|+.++..+|-++.+.- ..++++.+ |+.... + .
T Consensus 94 ~~~ri~vl~Sg~g~~l~~ll~~~~~g-~l~~~i~~--Visn~~----------------~-~------------------ 135 (292)
T 3lou_A 94 ARPKVLIMVSKLEHCLADLLFRWKMG-ELKMDIVG--IVSNHP----------------D-F------------------ 135 (292)
T ss_dssp SCCEEEEEECSCCHHHHHHHHHHHHT-SSCCEEEE--EEESSS----------------T-T------------------
T ss_pred CCCEEEEEEcCCCcCHHHHHHHHHcC-CCCcEEEE--EEeCcH----------------H-H------------------
Confidence 46799999999999999998876543 23455554 433211 0 0
Q ss_pred HHHhhcCCCcEEEEEEEcCCh---HHHHHHhhhhCCCcEEEECCCC
Q 024855 189 LDTCSQSKVMVDTVLIESDLV---AKAILDLIPVLNIRKLVVGTTK 231 (261)
Q Consensus 189 ~~~~~~~gV~ve~~vieGd~~---aeaIv~~A~e~~aDLIVmGsr~ 231 (261)
...+++.|+++...-...... .+++++..+++++|+||+....
T Consensus 136 ~~~A~~~gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~Dlivla~y~ 181 (292)
T 3lou_A 136 APLAAQHGLPFRHFPITADTKAQQEAQWLDVFETSGAELVILARYM 181 (292)
T ss_dssp HHHHHHTTCCEEECCCCSSCHHHHHHHHHHHHHHHTCSEEEESSCC
T ss_pred HHHHHHcCCCEEEeCCCcCCHHHHHHHHHHHHHHhCCCEEEecCch
Confidence 012456788875321111111 2478999999999999998773
No 103
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=32.05 E-value=1.3e+02 Score=20.92 Aligned_cols=44 Identities=5% Similarity=0.058 Sum_probs=26.2
Q ss_pred HHHHHHhhhhCCCcEEEECCCCCCcccccccceeccHHHHHhccCCcceee
Q 024855 210 AKAILDLIPVLNIRKLVVGTTKSSLRFHFHSINFNGIGTLILFYFSILLFC 260 (261)
Q Consensus 210 aeaIv~~A~e~~aDLIVmGsr~sgl~~~~r~l~lGSVA~~Vlr~A~ipv~~ 260 (261)
+...++...+..+|+|++.-.-.+... + ....++-+..++|++.
T Consensus 36 ~~~a~~~~~~~~~dlvi~D~~l~~~~g----~---~~~~~l~~~~~~~ii~ 79 (123)
T 1xhf_A 36 GAEMHQILSEYDINLVIMDINLPGKNG----L---LLARELREQANVALMF 79 (123)
T ss_dssp HHHHHHHHHHSCCSEEEECSSCSSSCH----H---HHHHHHHHHCCCEEEE
T ss_pred HHHHHHHHhcCCCCEEEEcCCCCCCCH----H---HHHHHHHhCCCCcEEE
Confidence 355666777889999999988433221 1 2334443335666654
No 104
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=31.94 E-value=42 Score=27.68 Aligned_cols=18 Identities=17% Similarity=0.028 Sum_probs=16.0
Q ss_pred ccHHHHHhccCCcceeeC
Q 024855 244 NGIGTLILFYFSILLFCF 261 (261)
Q Consensus 244 GSVA~~Vlr~A~ipv~~~ 261 (261)
|+++..+-++.++||+.+
T Consensus 59 Ggta~~lr~~~~iPVV~I 76 (196)
T 2q5c_A 59 GATSDYIKKSVSIPSISI 76 (196)
T ss_dssp HHHHHHHHTTCSSCEEEE
T ss_pred ChHHHHHHHhCCCCEEEE
Confidence 789999999999999864
No 105
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=31.17 E-value=98 Score=25.99 Aligned_cols=39 Identities=8% Similarity=-0.095 Sum_probs=21.1
Q ss_pred HhhcCCCcEEEEEEEcCChH--HHHHHhhhhCCCcEEEECCC
Q 024855 191 TCSQSKVMVDTVLIESDLVA--KAILDLIPVLNIRKLVVGTT 230 (261)
Q Consensus 191 ~~~~~gV~ve~~vieGd~~a--eaIv~~A~e~~aDLIVmGsr 230 (261)
.+++.|+.+..... ..+.. ..+++.....++|-||+...
T Consensus 27 ~a~~~g~~~~~~~~-~~~~~~~~~~i~~l~~~~vdgiIi~~~ 67 (313)
T 3m9w_A 27 KAESLGAKVFVQSA-NGNEETQMSQIENMINRGVDVLVIIPY 67 (313)
T ss_dssp HHHHTSCEEEEEEC-TTCHHHHHHHHHHHHHTTCSEEEEECS
T ss_pred HHHHcCCEEEEECC-CCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 34555766543322 22322 24455556678888887655
No 106
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=31.01 E-value=1.3e+02 Score=20.79 Aligned_cols=44 Identities=0% Similarity=-0.009 Sum_probs=26.9
Q ss_pred HHHHHHhhhhCCCcEEEECCCCCCcccccccceeccHHHHHhccCCcceee
Q 024855 210 AKAILDLIPVLNIRKLVVGTTKSSLRFHFHSINFNGIGTLILFYFSILLFC 260 (261)
Q Consensus 210 aeaIv~~A~e~~aDLIVmGsr~sgl~~~~r~l~lGSVA~~Vlr~A~ipv~~ 260 (261)
++...+...+..+|+|++.-.-.+... + ....++-+..++|++.
T Consensus 35 ~~~~~~~~~~~~~dlvi~d~~l~~~~g----~---~~~~~l~~~~~~~ii~ 78 (122)
T 1zgz_A 35 GAGLREIMQNQSVDLILLDINLPDENG----L---MLTRALRERSTVGIIL 78 (122)
T ss_dssp HHHHHHHHHHSCCSEEEEESCCSSSCH----H---HHHHHHHTTCCCEEEE
T ss_pred HHHHHHHHhcCCCCEEEEeCCCCCCCh----H---HHHHHHHhcCCCCEEE
Confidence 456667777888999999887433221 1 2344444445667654
No 107
>1v6t_A Hypothetical UPF0271 protein PH0986; TIM-barrel, lactam utilization protein, structural genomics; 1.70A {Pyrococcus horikoshii} SCOP: c.6.2.5
Probab=30.98 E-value=1.7e+02 Score=25.64 Aligned_cols=104 Identities=16% Similarity=0.166 Sum_probs=57.5
Q ss_pred EeecCChhHHHHHHHHHHHhcCCCCeEEEEEEecCCCCCCC--CCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHh
Q 024855 115 VAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPS--PLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFLDTC 192 (261)
Q Consensus 115 VaVDgSe~S~~AL~~Al~~A~~~ga~L~LLHVv~~~~~~p~--~~g~~~~~~~~~e~~e~~~~~~~e~~~~~Lek~~~~~ 192 (261)
||..|--.--...+..+++|+..|..|- ..|. +|. .+|.-.- .++++++.. ...-.+..+..+|
T Consensus 33 IACGfHAGDp~~M~~tv~lA~~~gV~IG---AHPg---ypDl~GFGRR~m-~~s~~el~~-------~v~YQiGAL~a~a 98 (255)
T 1v6t_A 33 VACGWHAGDPLVMRKTVRLAKENDVQVG---AHPG---YPDLMGFGRRYM-KLTPEEARN-------YILYQVGALYAFA 98 (255)
T ss_dssp EECSSSSCCHHHHHHHHHHHHHTTCEEE---EECC---CSCTTTTTCSCC-CCCHHHHHH-------HHHHHHHHHHHHH
T ss_pred hhccccCCCHHHHHHHHHHHHHcCCeEe---cCCC---CCcccCCCCCCC-CCCHHHHHH-------HHHHHHHHHHHHH
Confidence 4555543334445556666666666433 2222 221 2332111 234443322 2333355556667
Q ss_pred hcCCCcEEEEEEE---------cCChHHHHHHhhhhCCCcEEEECCCCC
Q 024855 193 SQSKVMVDTVLIE---------SDLVAKAILDLIPVLNIRKLVVGTTKS 232 (261)
Q Consensus 193 ~~~gV~ve~~vie---------Gd~~aeaIv~~A~e~~aDLIVmGsr~s 232 (261)
+..|.++..+--. ....+++|++.++..+.+|+++|-.++
T Consensus 99 ~~~G~~l~hVKPHGALYN~~~~d~~~A~av~~av~~~d~~L~l~~l~gs 147 (255)
T 1v6t_A 99 KAEGLELQHVKPHGALYNAMVKEEDLARAVIEGILDFDKDLILVTLSNS 147 (255)
T ss_dssp HHTTCCEEEECCCHHHHHHHHHCHHHHHHHHHHHHHHCTTCEEEEETTC
T ss_pred HHcCCEeEEeccCHHHHHHHhhCHHHHHHHHHHHHHhCCCcEEEecCCh
Confidence 7788887643211 235789999999999999999985443
No 108
>3us8_A Isocitrate dehydrogenase [NADP]; PSI-biology, structural genomics; 2.25A {Sinorhizobium meliloti}
Probab=29.83 E-value=65 Score=30.27 Aligned_cols=25 Identities=8% Similarity=0.115 Sum_probs=19.8
Q ss_pred hhHHHHHHHHHHHhcCCCCeEEEEE
Q 024855 121 QSSMDALSWTLRHAVNPSTLIFLIH 145 (261)
Q Consensus 121 e~S~~AL~~Al~~A~~~ga~L~LLH 145 (261)
+.+.+.+++|.++|.+++.+|+++|
T Consensus 208 ~~~eRiar~AFe~A~~r~kkVt~v~ 232 (427)
T 3us8_A 208 ESITEFARASFNYGLQRKVPVYLST 232 (427)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEEE
Confidence 4678888888888876667788888
No 109
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=29.65 E-value=67 Score=24.71 Aligned_cols=37 Identities=5% Similarity=-0.012 Sum_probs=27.9
Q ss_pred hhcCCCcEEEEEEEcCChHHHHHHhhhhCCCcEEEECCC
Q 024855 192 CSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTT 230 (261)
Q Consensus 192 ~~~~gV~ve~~vieGd~~aeaIv~~A~e~~aDLIVmGsr 230 (261)
++..|+++...=. +.+.+.|++.+.++++|+|.+.+.
T Consensus 27 l~~~G~~Vi~lG~--~~p~e~~v~~a~~~~~d~v~lS~~ 63 (137)
T 1ccw_A 27 FTNAGFNVVNIGV--LSPQELFIKAAIETKADAILVSSL 63 (137)
T ss_dssp HHHTTCEEEEEEE--EECHHHHHHHHHHHTCSEEEEEEC
T ss_pred HHHCCCEEEECCC--CCCHHHHHHHHHhcCCCEEEEEec
Confidence 4556887754322 334699999999999999999887
No 110
>4aoy_A Isocitrate dehydrogenase [NADP]; oxidoreductase, temperature adaptation, thermophilic, psychr NADP+ selectivity, domain movements; 2.35A {Clostridium thermocellum} PDB: 4aou_A
Probab=29.64 E-value=96 Score=28.86 Aligned_cols=25 Identities=8% Similarity=0.005 Sum_probs=20.5
Q ss_pred hhHHHHHHHHHHHhcCCCCeEEEEE
Q 024855 121 QSSMDALSWTLRHAVNPSTLIFLIH 145 (261)
Q Consensus 121 e~S~~AL~~Al~~A~~~ga~L~LLH 145 (261)
+.+.+.+++|.++|.+++.+|+++|
T Consensus 185 ~~~eRiar~AF~~A~~~~~~vt~v~ 209 (402)
T 4aoy_A 185 KSIRSFARACFNYALDMNQDLWFST 209 (402)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEEE
Confidence 6778888888888876667888888
No 111
>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*
Probab=29.36 E-value=58 Score=27.96 Aligned_cols=44 Identities=5% Similarity=0.068 Sum_probs=30.8
Q ss_pred HHHHHhhhhCCCcEEEECCC-CCCcccccccceeccHHHHHhccCCcceeeC
Q 024855 211 KAILDLIPVLNIRKLVVGTT-KSSLRFHFHSINFNGIGTLILFYFSILLFCF 261 (261)
Q Consensus 211 eaIv~~A~e~~aDLIVmGsr-~sgl~~~~r~l~lGSVA~~Vlr~A~ipv~~~ 261 (261)
..+++...+.++|+|.+|-. +-.+.+ .+ .+..++-+ .++|+++|
T Consensus 23 ~~~~~~l~~~GaD~IelG~S~g~t~~~----~~--~~v~~ir~-~~~Pivl~ 67 (234)
T 2f6u_A 23 DEIIKAVADSGTDAVMISGTQNVTYEK----AR--TLIEKVSQ-YGLPIVVE 67 (234)
T ss_dssp HHHHHHHHTTTCSEEEECCCTTCCHHH----HH--HHHHHHTT-SCCCEEEC
T ss_pred HHHHHHHHHcCCCEEEECCCCCCCHHH----HH--HHHHHhcC-CCCCEEEe
Confidence 45677778889999999974 444433 22 45666655 78999876
No 112
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8
Probab=28.77 E-value=19 Score=28.76 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=19.7
Q ss_pred ChHHHHHHhhhhCCCcEEEECCC
Q 024855 208 LVAKAILDLIPVLNIRKLVVGTT 230 (261)
Q Consensus 208 ~~aeaIv~~A~e~~aDLIVmGsr 230 (261)
...+.|.+++++++++.||||--
T Consensus 42 ~~~~~l~~li~~~~~~~ivVGlP 64 (150)
T 1vhx_A 42 YGLSRLSELIKDYTIDKIVLGFP 64 (150)
T ss_dssp CCHHHHHHHHTTSEEEEEEEECC
T ss_pred HHHHHHHHHHHHcCCCEEEEeee
Confidence 34789999999999999999944
No 113
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=28.58 E-value=1e+02 Score=21.36 Aligned_cols=22 Identities=14% Similarity=0.049 Sum_probs=16.4
Q ss_pred HHHHHHhhhhCCCcEEEECCCC
Q 024855 210 AKAILDLIPVLNIRKLVVGTTK 231 (261)
Q Consensus 210 aeaIv~~A~e~~aDLIVmGsr~ 231 (261)
.+..++..++..+|+|++...-
T Consensus 38 ~~~a~~~~~~~~~dlvi~d~~~ 59 (127)
T 2gkg_A 38 GKGSVEQIRRDRPDLVVLAVDL 59 (127)
T ss_dssp HHHHHHHHHHHCCSEEEEESBC
T ss_pred HHHHHHHHHhcCCCEEEEeCCC
Confidence 3555666677789999998774
No 114
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=28.52 E-value=1.5e+02 Score=21.39 Aligned_cols=22 Identities=5% Similarity=-0.055 Sum_probs=16.7
Q ss_pred HHHHHHhhhhCCCcEEEECCCC
Q 024855 210 AKAILDLIPVLNIRKLVVGTTK 231 (261)
Q Consensus 210 aeaIv~~A~e~~aDLIVmGsr~ 231 (261)
++..++.+.+..+|+|++.-.-
T Consensus 37 ~~~al~~~~~~~~dlvllD~~l 58 (136)
T 2qzj_A 37 CEEAIGKIFSNKYDLIFLEIIL 58 (136)
T ss_dssp HHHHHHHHHHCCCSEEEEESEE
T ss_pred HHHHHHHHHhcCCCEEEEeCCC
Confidence 3555677777889999998773
No 115
>2qfy_A Isocitrate dehydrogenase [NADP]; rossmann fold, oxidoreductase; HET: AKG; 2.10A {Saccharomyces cerevisiae} PDB: 2qfw_A* 2qfx_A* 2qfv_A*
Probab=28.43 E-value=56 Score=30.65 Aligned_cols=25 Identities=16% Similarity=0.163 Sum_probs=20.3
Q ss_pred hhHHHHHHHHHHHhcCCCCeEEEEE
Q 024855 121 QSSMDALSWTLRHAVNPSTLIFLIH 145 (261)
Q Consensus 121 e~S~~AL~~Al~~A~~~ga~L~LLH 145 (261)
+.+.+.+++|.++|++++.+|+++|
T Consensus 203 ~~ieRIar~AFe~A~~r~~kVt~v~ 227 (427)
T 2qfy_A 203 ESIEGFAHSSFKLAIDKKLNLFLST 227 (427)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCCceEEEE
Confidence 6788888888888886666788888
No 116
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=28.27 E-value=83 Score=26.68 Aligned_cols=18 Identities=11% Similarity=0.161 Sum_probs=16.0
Q ss_pred ccHHHHHhccCCcceeeC
Q 024855 244 NGIGTLILFYFSILLFCF 261 (261)
Q Consensus 244 GSVA~~Vlr~A~ipv~~~ 261 (261)
|+++..+-++.++||+.+
T Consensus 71 Ggta~~Lr~~~~iPVV~I 88 (225)
T 2pju_A 71 GSNGAYLKSRLSVPVILI 88 (225)
T ss_dssp HHHHHHHHTTCSSCEEEE
T ss_pred ChHHHHHHhhCCCCEEEe
Confidence 789999999999999864
No 117
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=28.04 E-value=1.3e+02 Score=21.44 Aligned_cols=22 Identities=14% Similarity=0.076 Sum_probs=16.9
Q ss_pred HHHHHHhhhhCCCcEEEECCCC
Q 024855 210 AKAILDLIPVLNIRKLVVGTTK 231 (261)
Q Consensus 210 aeaIv~~A~e~~aDLIVmGsr~ 231 (261)
.+..++...+..+|+|++.-.-
T Consensus 43 ~~~a~~~~~~~~~dlii~d~~~ 64 (140)
T 3cg0_A 43 GEEAVRCAPDLRPDIALVDIML 64 (140)
T ss_dssp HHHHHHHHHHHCCSEEEEESSC
T ss_pred HHHHHHHHHhCCCCEEEEecCC
Confidence 3566677777789999999774
No 118
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=27.64 E-value=65 Score=26.94 Aligned_cols=60 Identities=8% Similarity=0.018 Sum_probs=30.9
Q ss_pred hhcCCCcEEEEEEEc-CChHH--HHHHhhhhCCCcEEEECCCC-CCcccccccceeccHHHHHhccCCcceeeC
Q 024855 192 CSQSKVMVDTVLIES-DLVAK--AILDLIPVLNIRKLVVGTTK-SSLRFHFHSINFNGIGTLILFYFSILLFCF 261 (261)
Q Consensus 192 ~~~~gV~ve~~vieG-d~~ae--aIv~~A~e~~aDLIVmGsr~-sgl~~~~r~l~lGSVA~~Vlr~A~ipv~~~ 261 (261)
+++.|+.+....... +++.+ ..++.....++|-||+.... ..... .-+-++.+.|||+++
T Consensus 29 a~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~----------~~~~~~~~giPvV~~ 92 (297)
T 3rot_A 29 AEELKVDLQILAPPGANDVPKQVQFIESALATYPSGIATTIPSDTAFSK----------SLQRANKLNIPVIAV 92 (297)
T ss_dssp HHHHTCEEEEECCSSSCCHHHHHHHHHHHHHTCCSEEEECCCCSSTTHH----------HHHHHHHHTCCEEEE
T ss_pred HHHhCcEEEEECCCCcCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHH----------HHHHHHHCCCCEEEE
Confidence 444576654322111 13332 34555556789999986653 22211 112345568888764
No 119
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=27.33 E-value=1.3e+02 Score=24.99 Aligned_cols=61 Identities=11% Similarity=0.018 Sum_probs=30.6
Q ss_pred HhhcCCCcEEEEEEEcCChHH--HHHHhhhhCCCcEEEECCCC-CCcccccccceeccHHHHHhccCCcceeeC
Q 024855 191 TCSQSKVMVDTVLIESDLVAK--AILDLIPVLNIRKLVVGTTK-SSLRFHFHSINFNGIGTLILFYFSILLFCF 261 (261)
Q Consensus 191 ~~~~~gV~ve~~vieGd~~ae--aIv~~A~e~~aDLIVmGsr~-sgl~~~~r~l~lGSVA~~Vlr~A~ipv~~~ 261 (261)
.+++.|+.+........+..+ .+++.....++|-||+.... ..... .-+-++...+||+++
T Consensus 29 ~a~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~----------~~~~~~~~~iPvV~~ 92 (305)
T 3g1w_A 29 AAQALNVTVEYRGAAQYDIQEQITVLEQAIAKNPAGIAISAIDPVELTD----------TINKAVDAGIPIVLF 92 (305)
T ss_dssp HHHHHTCEEEEEECSSSCHHHHHHHHHHHHHHCCSEEEECCSSTTTTHH----------HHHHHHHTTCCEEEE
T ss_pred HHHHcCCEEEEeCCCcCCHHHHHHHHHHHHHhCCCEEEEcCCCHHHHHH----------HHHHHHHCCCcEEEE
Confidence 344457666432222233222 34455556789988886553 22211 112244567888764
No 120
>1qzu_A Hypothetical protein MDS018; alpha-beta sandwich, lyase; HET: FMN; 2.91A {Homo sapiens} SCOP: c.34.1.1
Probab=27.18 E-value=41 Score=28.25 Aligned_cols=36 Identities=11% Similarity=0.141 Sum_probs=26.7
Q ss_pred CCCeEEEeecCChhHHHHHHHHHHHhcC-CCCeEEEEE
Q 024855 109 EEDIIYVAVGKSQSSMDALSWTLRHAVN-PSTLIFLIH 145 (261)
Q Consensus 109 ~~kkILVaVDgSe~S~~AL~~Al~~A~~-~ga~L~LLH 145 (261)
..+||+|++-|+-.+.+++++.-.+ ++ .|.+++++-
T Consensus 18 ~~k~IllgvTGsiaa~k~~~lv~~L-~~~~g~~V~vv~ 54 (206)
T 1qzu_A 18 RKFHVLVGVTGSVAALKLPLLVSKL-LDIPGLEVAVVT 54 (206)
T ss_dssp SSEEEEEEECSSGGGGTHHHHHHHH-C---CEEEEEEE
T ss_pred CCCEEEEEEeChHHHHHHHHHHHHH-hcccCCEEEEEE
Confidence 4579999999999999998887655 44 576666553
No 121
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens}
Probab=26.84 E-value=78 Score=28.42 Aligned_cols=57 Identities=12% Similarity=0.031 Sum_probs=34.4
Q ss_pred hhcCCCcEEEEEEEcCChHHHHHHhhhhCCCcEEEECCCC---C-CcccccccceeccHHHHHhccCCcceee
Q 024855 192 CSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTTK---S-SLRFHFHSINFNGIGTLILFYFSILLFC 260 (261)
Q Consensus 192 ~~~~gV~ve~~vieGd~~aeaIv~~A~e~~aDLIVmGsr~---s-gl~~~~r~l~lGSVA~~Vlr~A~ipv~~ 260 (261)
+.+.|++++.+ . |...-.+.+ ++|++++|+.+ . ++.. ..+.....-..|+..+||++
T Consensus 168 L~~~gI~vtli--~-Dsa~~~~m~-----~vd~VivGAd~i~~nG~v~n----kiGT~~iAl~Ak~~~vP~~V 228 (315)
T 3ecs_A 168 LCHLNVPVTVV--L-DAAVGYIME-----KADLVIVGAEGVVENGGIIN----KIGTNQMAVCAKAQNKPFYV 228 (315)
T ss_dssp HHTTTCCEEEE--C-GGGHHHHGG-----GCSEEEEECSEECTTSCEEE----ETTHHHHHHHHHHTTCCEEE
T ss_pred HHHcCCCEEEE--e-hhHHHHHHH-----hCCEEEECceEEecCCCeee----hhhhHHHHHHHHHhCCCEEE
Confidence 34568888533 2 332333333 69999999993 3 3433 22333345577888999875
No 122
>1lwd_A Isocitrate dehydrogenase; tricarboxylic acid cycle, oxidoreductase, NADP; HET: ICT; 1.85A {Sus scrofa} SCOP: c.77.1.1 PDB: 1t0l_A* 1t09_A* 3mas_B* 3map_A* 3mar_A* 3mas_A* 3inm_A* 2cmj_A* 2cmv_A*
Probab=26.66 E-value=84 Score=29.29 Aligned_cols=25 Identities=8% Similarity=0.044 Sum_probs=20.3
Q ss_pred hhHHHHHHHHHHHhcCCCCeEEEEE
Q 024855 121 QSSMDALSWTLRHAVNPSTLIFLIH 145 (261)
Q Consensus 121 e~S~~AL~~Al~~A~~~ga~L~LLH 145 (261)
+.+++.+++|.++|.+++.+|+++|
T Consensus 187 ~~~eRiar~AFe~A~~r~~kVt~v~ 211 (413)
T 1lwd_A 187 ESISGFAHSCFQYAIQKKWPLYMST 211 (413)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCCceEEEE
Confidence 5788888888888886666788888
No 123
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=26.35 E-value=1.7e+02 Score=20.54 Aligned_cols=26 Identities=8% Similarity=0.098 Sum_probs=18.9
Q ss_pred CChHHHHHHhhhhCCCcEEEECCCCCC
Q 024855 207 DLVAKAILDLIPVLNIRKLVVGTTKSS 233 (261)
Q Consensus 207 d~~aeaIv~~A~e~~aDLIVmGsr~sg 233 (261)
.. ++..++..++..+|+|++.-.-.+
T Consensus 33 ~~-~~~al~~l~~~~~dlvllD~~~p~ 58 (122)
T 3gl9_A 33 EN-GQIALEKLSEFTPDLIVLXIMMPV 58 (122)
T ss_dssp SS-HHHHHHHHTTBCCSEEEECSCCSS
T ss_pred CC-HHHHHHHHHhcCCCEEEEeccCCC
Confidence 44 355566777889999999988433
No 124
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=26.15 E-value=1.7e+02 Score=20.91 Aligned_cols=25 Identities=8% Similarity=0.088 Sum_probs=19.2
Q ss_pred CChHHHHHHhhhh-CCCcEEEECCCCC
Q 024855 207 DLVAKAILDLIPV-LNIRKLVVGTTKS 232 (261)
Q Consensus 207 d~~aeaIv~~A~e-~~aDLIVmGsr~s 232 (261)
.. ++..++.+++ ..+|+|++.-.-.
T Consensus 36 ~~-~~~a~~~l~~~~~~dlvi~D~~l~ 61 (140)
T 3lua_A 36 EN-LKKFYSIFKDLDSITLIIMDIAFP 61 (140)
T ss_dssp CS-HHHHHTTTTTCCCCSEEEECSCSS
T ss_pred CC-HHHHHHHHhcCCCCcEEEEeCCCC
Confidence 44 4666777777 8999999998844
No 125
>1w0d_A 3-isopropylmalate dehydrogenase; oxidoreductase, leucine biosynthesis, NAD, ST genomics, PSI, protein structure initiative; 1.65A {Mycobacterium tuberculosis} SCOP: c.77.1.1 PDB: 2g4o_A
Probab=26.00 E-value=49 Score=30.11 Aligned_cols=59 Identities=17% Similarity=0.161 Sum_probs=37.3
Q ss_pred CCccccccccccceeeecccCCCCCCCCCeEEEeecC----ChhHHHHHHHHHHHhcCCCCeEEEEE
Q 024855 83 MPLAPIKEEIESSFFSFDVANGNGTQEEDIIYVAVGK----SQSSMDALSWTLRHAVNPSTLIFLIH 145 (261)
Q Consensus 83 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~kkILVaVDg----Se~S~~AL~~Al~~A~~~ga~L~LLH 145 (261)
++++.+||-.++.-|...-....++ ... +++|. -+.+++.+++|.++|+++..+|+++|
T Consensus 116 ~DivivREnteg~Y~g~e~~~~~g~--~~~--~a~~~~~~T~~~~eRiar~AFe~A~~rrkkVt~v~ 178 (337)
T 1w0d_A 116 IDFVVVREGTEGPYTGNGGAIRVGT--PNE--VATEVSVNTAFGVRRVVADAFERARRRRKHLTLVH 178 (337)
T ss_dssp CEEEEEEECSCSGGGCCEEEESTTS--TTC--EEEEEEEEEHHHHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CcEEEEecCCCCeecCCcceecCCC--CCC--eEEEEEEEcHHHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 7888899998865552110000111 112 33333 34788999999999987777899998
No 126
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=25.45 E-value=1.8e+02 Score=20.71 Aligned_cols=23 Identities=9% Similarity=0.102 Sum_probs=17.2
Q ss_pred HHHHHHhhhhCCCcEEEECCCCCC
Q 024855 210 AKAILDLIPVLNIRKLVVGTTKSS 233 (261)
Q Consensus 210 aeaIv~~A~e~~aDLIVmGsr~sg 233 (261)
.+..++...+..+|+||+.. -.+
T Consensus 37 ~~~a~~~l~~~~~dlvi~d~-~~~ 59 (142)
T 2qxy_A 37 EQEAFTFLRREKIDLVFVDV-FEG 59 (142)
T ss_dssp HHHHHHHHTTSCCSEEEEEC-TTT
T ss_pred HHHHHHHHhccCCCEEEEeC-CCC
Confidence 35666777778999999987 443
No 127
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=25.42 E-value=97 Score=22.47 Aligned_cols=46 Identities=7% Similarity=-0.084 Sum_probs=27.4
Q ss_pred CChHHHHHHhhhhCCCcEEEECCCCCCcccccccceeccHHHHHhc---cCCcceee
Q 024855 207 DLVAKAILDLIPVLNIRKLVVGTTKSSLRFHFHSINFNGIGTLILF---YFSILLFC 260 (261)
Q Consensus 207 d~~aeaIv~~A~e~~aDLIVmGsr~sgl~~~~r~l~lGSVA~~Vlr---~A~ipv~~ 260 (261)
.. .+..++...+..+|+||+...-.+... -....++-+ ...+||++
T Consensus 39 ~~-~~~a~~~l~~~~~dlii~d~~l~~~~g-------~~~~~~l~~~~~~~~~pii~ 87 (147)
T 2zay_A 39 GN-AIEAVPVAVKTHPHLIITEANMPKISG-------MDLFNSLKKNPQTASIPVIA 87 (147)
T ss_dssp SS-HHHHHHHHHHHCCSEEEEESCCSSSCH-------HHHHHHHHTSTTTTTSCEEE
T ss_pred CC-HHHHHHHHHcCCCCEEEEcCCCCCCCH-------HHHHHHHHcCcccCCCCEEE
Confidence 44 355667777778999999987433221 123444443 45677765
No 128
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=25.42 E-value=45 Score=26.58 Aligned_cols=37 Identities=5% Similarity=-0.106 Sum_probs=27.1
Q ss_pred hhcCCCcEEEEEEEcCChHHHHHHhhhhCCCcEEEECCC
Q 024855 192 CSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTT 230 (261)
Q Consensus 192 ~~~~gV~ve~~vieGd~~aeaIv~~A~e~~aDLIVmGsr 230 (261)
++..|+++... -.+.+.+.|++.+.++++|+|.+...
T Consensus 42 l~~~G~eVi~l--G~~~p~e~lv~aa~~~~~diV~lS~~ 78 (161)
T 2yxb_A 42 LRDAGFEVVYT--GLRQTPEQVAMAAVQEDVDVIGVSIL 78 (161)
T ss_dssp HHHTTCEEECC--CSBCCHHHHHHHHHHTTCSEEEEEES
T ss_pred HHHCCCEEEEC--CCCCCHHHHHHHHHhcCCCEEEEEee
Confidence 45568766422 12334699999999999999999877
No 129
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=25.19 E-value=1.9e+02 Score=23.76 Aligned_cols=64 Identities=3% Similarity=-0.061 Sum_probs=34.4
Q ss_pred HHHHHHhhcCCCcEEEEEEEcCChH--HHHHHhhhhCCCcEEEECCCCCCcccccccceeccHHHHHhccCCcceeeC
Q 024855 186 QKFLDTCSQSKVMVDTVLIESDLVA--KAILDLIPVLNIRKLVVGTTKSSLRFHFHSINFNGIGTLILFYFSILLFCF 261 (261)
Q Consensus 186 ek~~~~~~~~gV~ve~~vieGd~~a--eaIv~~A~e~~aDLIVmGsr~sgl~~~~r~l~lGSVA~~Vlr~A~ipv~~~ 261 (261)
+.+.+.+++.|+.+..... ..+.. ..+++.....++|-||+...... . -.-+-++...+||+++
T Consensus 28 ~gi~~~a~~~g~~~~~~~~-~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~----------~~~~~~~~~~iPvV~~ 93 (291)
T 3egc_A 28 SGVESEARHKGYSVLLANT-AEDIVREREAVGQFFERRVDGLILAPSEGE-H----------DYLRTELPKTFPIVAV 93 (291)
T ss_dssp HHHHHHHHHTTCEEEEEEC-TTCHHHHHHHHHHHHHTTCSEEEECCCSSC-C----------HHHHHSSCTTSCEEEE
T ss_pred HHHHHHHHHCCCEEEEEeC-CCCHHHHHHHHHHHHHCCCCEEEEeCCCCC-h----------HHHHHhhccCCCEEEE
Confidence 3344445566776653322 22322 33566667788999888665321 1 1112345567887764
No 130
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=24.95 E-value=2.5e+02 Score=23.34 Aligned_cols=19 Identities=5% Similarity=0.085 Sum_probs=14.2
Q ss_pred EEEeecCChhHHHHHHHHH
Q 024855 113 IYVAVGKSQSSMDALSWTL 131 (261)
Q Consensus 113 ILVaVDgSe~S~~AL~~Al 131 (261)
-.|.+|.-...+.|.++.+
T Consensus 100 ~~V~~D~~~~g~~a~~~L~ 118 (313)
T 3m9w_A 100 FYISFDNEKVGELQAKALV 118 (313)
T ss_dssp EEEEECHHHHHHHHHHHHH
T ss_pred EEEecCHHHHHHHHHHHHH
Confidence 3677787777888887776
No 131
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=24.92 E-value=1.9e+02 Score=20.69 Aligned_cols=35 Identities=6% Similarity=-0.016 Sum_probs=22.6
Q ss_pred cCCCcEEEEEEEcCChHHHHHHhhhhCCCcEEEECCCC
Q 024855 194 QSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTTK 231 (261)
Q Consensus 194 ~~gV~ve~~vieGd~~aeaIv~~A~e~~aDLIVmGsr~ 231 (261)
..|..+.. ..... .+..++.+.+..+|+|++...-
T Consensus 27 ~~~~~~~v--~~~~~-~~~a~~~l~~~~~dlii~D~~l 61 (144)
T 3kht_A 27 RKDIHCQL--EFVDN-GAKALYQVQQAKYDLIILDIGL 61 (144)
T ss_dssp HTTCCEEE--EEESS-HHHHHHHHTTCCCSEEEECTTC
T ss_pred hcCCCeeE--EEECC-HHHHHHHhhcCCCCEEEEeCCC
Confidence 34555332 22344 3566677778899999999883
No 132
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=24.53 E-value=1.5e+02 Score=25.12 Aligned_cols=64 Identities=6% Similarity=-0.091 Sum_probs=31.6
Q ss_pred HHHHHhhcCCCcEEEEEEEcCChH--HHHHHhhhhCCCcEEEECCCCCCcccccccceeccHHHHHhccCCcceeeC
Q 024855 187 KFLDTCSQSKVMVDTVLIESDLVA--KAILDLIPVLNIRKLVVGTTKSSLRFHFHSINFNGIGTLILFYFSILLFCF 261 (261)
Q Consensus 187 k~~~~~~~~gV~ve~~vieGd~~a--eaIv~~A~e~~aDLIVmGsr~sgl~~~~r~l~lGSVA~~Vlr~A~ipv~~~ 261 (261)
.+.+.+++.|+.+..... ..+.. ..+++.....++|-||+-...... ......++...+||+++
T Consensus 84 gi~~~a~~~g~~~~~~~~-~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~----------~~~~~~~~~~~iPvV~~ 149 (338)
T 3dbi_A 84 HAARMAEEKGRQLLLADG-KHSAEEERQAIQYLLDLRCDAIMIYPRFLSV----------DEIDDIIDAHSQPIMVL 149 (338)
T ss_dssp HHHHHHHHTTCEEEEEEC-TTSHHHHHHHHHHHHHTTCSEEEECCSSSCH----------HHHHHHHHHCSSCEEEE
T ss_pred HHHHHHHHCCCEEEEEeC-CCChHHHHHHHHHHHhCCCCEEEEeCCCCCh----------HHHHHHHHcCCCCEEEE
Confidence 333445556766543221 22222 224555566788888875432211 11234455667777653
No 133
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=24.42 E-value=3e+02 Score=22.74 Aligned_cols=84 Identities=15% Similarity=0.089 Sum_probs=49.3
Q ss_pred CeEEEeecCChhHHHHHHHHHHHhcCCCCeEEEEEEecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 024855 111 DIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFLD 190 (261)
Q Consensus 111 kkILVaVDgSe~S~~AL~~Al~~A~~~ga~L~LLHVv~~~~~~p~~~g~~~~~~~~~e~~e~~~~~~~e~~~~~Lek~~~ 190 (261)
+||.|-+.|+....+||-.+.+.- ..+.+|.+|-.-++.. . ..+
T Consensus 1 ~riaVl~SG~Gs~L~aLi~~~~~~-~~~~~I~~Vvs~~~~~----------------~-------------------~~~ 44 (209)
T 1meo_A 1 ARVAVLISGTGSNLQALIDSTREP-NSSAQIDIVISNKAAV----------------A-------------------GLD 44 (209)
T ss_dssp CEEEEEESSSCTTHHHHHHHHHST-TCSCEEEEEEESSTTC----------------H-------------------HHH
T ss_pred CeEEEEEECCchHHHHHHHHHhcC-CCCcEEEEEEeCCCCh----------------H-------------------HHH
Confidence 478999999998888886654321 2245555544321100 0 013
Q ss_pred HhhcCCCcEEEEEEE-cCCh---HHHHHHhhhhCCCcEEEECCC
Q 024855 191 TCSQSKVMVDTVLIE-SDLV---AKAILDLIPVLNIRKLVVGTT 230 (261)
Q Consensus 191 ~~~~~gV~ve~~vie-Gd~~---aeaIv~~A~e~~aDLIVmGsr 230 (261)
.|++.|+++...-.. .... .+.+++..+++++|+||+...
T Consensus 45 ~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~~~Dliv~a~y 88 (209)
T 1meo_A 45 KAERAGIPTRVINHKLYKNRVEFDSAIDLVLEEFSIDIVCLAGF 88 (209)
T ss_dssp HHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHHTTCCEEEEESC
T ss_pred HHHHcCCCEEEECccccCchhhhhHHHHHHHHhcCCCEEEEcch
Confidence 456678886421100 0110 256888899999999998776
No 134
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=24.13 E-value=2e+02 Score=23.46 Aligned_cols=40 Identities=15% Similarity=0.040 Sum_probs=22.3
Q ss_pred HHhhcCCCcEEEEEEEcCChH--HHHHHhhhhCCCcEEEECCC
Q 024855 190 DTCSQSKVMVDTVLIESDLVA--KAILDLIPVLNIRKLVVGTT 230 (261)
Q Consensus 190 ~~~~~~gV~ve~~vieGd~~a--eaIv~~A~e~~aDLIVmGsr 230 (261)
+.+++.|+.+..... ..+.. ..+++.....++|-||+-..
T Consensus 39 ~~a~~~g~~~~~~~~-~~~~~~~~~~~~~l~~~~vdgiIi~~~ 80 (298)
T 3tb6_A 39 SYLSEQGYSMLLTST-NNNPDNERRGLENLLSQHIDGLIVEPT 80 (298)
T ss_dssp HHHHHTTCEEEEEEC-TTCHHHHHHHHHHHHHTCCSEEEECCS
T ss_pred HHHHHCCCEEEEEeC-CCChHHHHHHHHHHHHCCCCEEEEecc
Confidence 345556776643322 22322 23555555778998888655
No 135
>3vmk_A 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase; HET: IPM; 1.48A {Shewanella benthica} PDB: 3vml_A* 3vmj_A* 3vl2_A* 3vkz_A* 3vl4_A* 3vl6_A* 3vl7_A* 3vl3_A*
Probab=23.87 E-value=70 Score=29.54 Aligned_cols=59 Identities=10% Similarity=0.105 Sum_probs=36.1
Q ss_pred CCccccccccccceeeecccCCCCCCCCCeEEEeecC----ChhHHHHHHHHHHHhcCCCCeEEEEE
Q 024855 83 MPLAPIKEEIESSFFSFDVANGNGTQEEDIIYVAVGK----SQSSMDALSWTLRHAVNPSTLIFLIH 145 (261)
Q Consensus 83 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~kkILVaVDg----Se~S~~AL~~Al~~A~~~ga~L~LLH 145 (261)
+.++.+||-.++.-|... + +........ +++|. -+.+++.+++|.++|+++..+|+++|
T Consensus 141 vD~vIvREnTeG~Y~g~~-~-~~~~~~~~~--~a~~~~~~Tr~~~eRIar~AFe~A~~rrkkVT~v~ 203 (375)
T 3vmk_A 141 FDILCVRELTGGIYFGKP-K-GRQGEGENE--EAFDTMRYSRKEIRRIAKIAFESAQGRRKKVTSVD 203 (375)
T ss_dssp CEEEEEEECSSBTTTCSS-C-EEECCGGGC--EEEEEEEEEHHHHHHHHHHHHHHHHTTTSEEEEEE
T ss_pred CCEEEEeeCCCCEecCCc-c-ccccCCCCc--eEEEEEEEcHHHHHHHHHHHHHHHHHcCCcEEEEE
Confidence 678888988876554110 0 000000011 34443 24788999999999987788899988
No 136
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=23.67 E-value=1.6e+02 Score=21.61 Aligned_cols=22 Identities=14% Similarity=0.221 Sum_probs=17.1
Q ss_pred HHHHHHhhhhCCCcEEEECCCC
Q 024855 210 AKAILDLIPVLNIRKLVVGTTK 231 (261)
Q Consensus 210 aeaIv~~A~e~~aDLIVmGsr~ 231 (261)
.+..++..++..+|+|++...-
T Consensus 47 ~~~a~~~l~~~~~dlvi~D~~l 68 (153)
T 3hv2_A 47 ATQALQLLASREVDLVISAAHL 68 (153)
T ss_dssp HHHHHHHHHHSCCSEEEEESCC
T ss_pred HHHHHHHHHcCCCCEEEEeCCC
Confidence 3555667778899999999883
No 137
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=23.67 E-value=1.6e+02 Score=25.02 Aligned_cols=37 Identities=11% Similarity=-0.120 Sum_probs=27.5
Q ss_pred hhcCCCcEEEEEEEcCChHHHHHHhhhhCCCcEEEECCC
Q 024855 192 CSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTT 230 (261)
Q Consensus 192 ~~~~gV~ve~~vieGd~~aeaIv~~A~e~~aDLIVmGsr 230 (261)
++..|+++...=. .-+ .+.|++.++++++|+|.+...
T Consensus 147 L~~~G~~Vi~LG~-~vp-~e~l~~~~~~~~~d~V~lS~l 183 (258)
T 2i2x_B 147 LRANGYNVVDLGR-DVP-AEEVLAAVQKEKPIMLTGTAL 183 (258)
T ss_dssp HHHTTCEEEEEEE-ECC-SHHHHHHHHHHCCSEEEEECC
T ss_pred HHHCCCEEEECCC-CCC-HHHHHHHHHHcCCCEEEEEee
Confidence 4556887754322 234 599999999999999999876
No 138
>3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG, structural protein structure initiative, midwest center for structural genomics; 2.10A {Bacillus halodurans}
Probab=23.44 E-value=69 Score=26.77 Aligned_cols=36 Identities=8% Similarity=0.009 Sum_probs=27.3
Q ss_pred CCCeEEEeecCChhHH-HHHHHHHHHhcCCCCeEEEEE
Q 024855 109 EEDIIYVAVGKSQSSM-DALSWTLRHAVNPSTLIFLIH 145 (261)
Q Consensus 109 ~~kkILVaVDgSe~S~-~AL~~Al~~A~~~ga~L~LLH 145 (261)
..+||+|++-|+-.+. ++++..-.+. +.|.+++++-
T Consensus 6 ~~k~I~lgiTGs~aa~~k~~~ll~~L~-~~g~eV~vv~ 42 (201)
T 3lqk_A 6 AGKHVGFGLTGSHCTYHEVLPQMERLV-ELGAKVTPFV 42 (201)
T ss_dssp TTCEEEEECCSCGGGGGGTHHHHHHHH-HTTCEEEEEC
T ss_pred CCCEEEEEEEChHHHHHHHHHHHHHHh-hCCCEEEEEE
Confidence 4579999999998888 8998876554 4577765543
No 139
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=23.32 E-value=2.1e+02 Score=20.50 Aligned_cols=26 Identities=12% Similarity=-0.045 Sum_probs=19.0
Q ss_pred CChHHHHHHhhhhCCCcEEEECCCCCC
Q 024855 207 DLVAKAILDLIPVLNIRKLVVGTTKSS 233 (261)
Q Consensus 207 d~~aeaIv~~A~e~~aDLIVmGsr~sg 233 (261)
.. ++..++.+.+..+|+|++.-.-.+
T Consensus 35 ~~-~~~al~~~~~~~~dlvl~D~~lp~ 60 (136)
T 3t6k_A 35 AS-GEEALQQIYKNLPDALICDVLLPG 60 (136)
T ss_dssp SS-HHHHHHHHHHSCCSEEEEESCCSS
T ss_pred CC-HHHHHHHHHhCCCCEEEEeCCCCC
Confidence 44 355667777889999999988433
No 140
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=23.25 E-value=2e+02 Score=22.33 Aligned_cols=44 Identities=5% Similarity=-0.071 Sum_probs=27.0
Q ss_pred HHHHHHhhhhCCCcEEEECCCCCCcccccccceeccHHHHHhccCCcceee
Q 024855 210 AKAILDLIPVLNIRKLVVGTTKSSLRFHFHSINFNGIGTLILFYFSILLFC 260 (261)
Q Consensus 210 aeaIv~~A~e~~aDLIVmGsr~sgl~~~~r~l~lGSVA~~Vlr~A~ipv~~ 260 (261)
++..++.+.+..+|+|++.-.-.+... -.+...+-+..++||++
T Consensus 47 ~~~al~~~~~~~~dlvi~D~~~p~~~g-------~~~~~~l~~~~~~pii~ 90 (205)
T 1s8n_A 47 GQEAVELAELHKPDLVIMDVKMPRRDG-------IDAASEIASKRIAPIVV 90 (205)
T ss_dssp HHHHHHHHHHHCCSEEEEESSCSSSCH-------HHHHHHHHHTTCSCEEE
T ss_pred HHHHHHHHhhcCCCEEEEeCCCCCCCh-------HHHHHHHHhcCCCCEEE
Confidence 355566777788999999988433221 12445555555567665
No 141
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=23.21 E-value=1e+02 Score=24.45 Aligned_cols=35 Identities=9% Similarity=0.088 Sum_probs=22.9
Q ss_pred hhcCCCcEEEEEEEcCChHHHHHHhhhhC----CCcEEEE
Q 024855 192 CSQSKVMVDTVLIESDLVAKAILDLIPVL----NIRKLVV 227 (261)
Q Consensus 192 ~~~~gV~ve~~vieGd~~aeaIv~~A~e~----~aDLIVm 227 (261)
+++.|+++....+..|++ +.|.+..++. ++|+||.
T Consensus 30 l~~~G~~v~~~~iv~Dd~-~~i~~~l~~~~~~~~~DlVit 68 (164)
T 2is8_A 30 LAGGPFEVAAYELVPDEP-PMIKKVLRLWADREGLDLILT 68 (164)
T ss_dssp HTTSSEEEEEEEEECSCH-HHHHHHHHHHHHTSCCSEEEE
T ss_pred HHHCCCeEeEEEEcCCCH-HHHHHHHHHHHhcCCCCEEEE
Confidence 455688777666667773 6666555432 7898876
No 142
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=22.93 E-value=1.8e+02 Score=20.20 Aligned_cols=24 Identities=0% Similarity=-0.143 Sum_probs=18.2
Q ss_pred CChHHHHHHhhhhCCCcEEEECCCC
Q 024855 207 DLVAKAILDLIPVLNIRKLVVGTTK 231 (261)
Q Consensus 207 d~~aeaIv~~A~e~~aDLIVmGsr~ 231 (261)
.. ++..++...+..+|+|++...-
T Consensus 33 ~~-~~~a~~~~~~~~~dlvi~D~~l 56 (127)
T 2jba_A 33 ED-YDSAVNQLNEPWPDLILLAWML 56 (127)
T ss_dssp CS-HHHHHTTCSSSCCSEEEEESEE
T ss_pred CC-HHHHHHHHhccCCCEEEEecCC
Confidence 44 4666677788889999998773
No 143
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=22.92 E-value=1.3e+02 Score=23.77 Aligned_cols=36 Identities=8% Similarity=0.011 Sum_probs=24.7
Q ss_pred hhcCCCcEEEEEEEcCChHHHHHHhhh----hCCCcEEEEC
Q 024855 192 CSQSKVMVDTVLIESDLVAKAILDLIP----VLNIRKLVVG 228 (261)
Q Consensus 192 ~~~~gV~ve~~vieGd~~aeaIv~~A~----e~~aDLIVmG 228 (261)
+.+.|+++....+.+|++ +.|.+... ..++|+||..
T Consensus 49 L~~~G~~v~~~~iV~Dd~-~~i~~al~~~~a~~~~DlVitt 88 (178)
T 3iwt_A 49 LIENGHKIIGYSLVPDDK-IKILKAFTDALSIDEVDVIIST 88 (178)
T ss_dssp HHHTTCEEEEEEEECSCH-HHHHHHHHHHHTCTTCCEEEEE
T ss_pred HHHCCCEEEEEEEeCCCH-HHHHHHHHHHHhcCCCCEEEec
Confidence 455688888777778874 66655433 4578998864
No 144
>2x5e_A UPF0271 protein PA4511; unknown function; HET: CIT; 2.30A {Pseudomonas aeruginosa} PDB: 2xu2_A*
Probab=22.90 E-value=1.6e+02 Score=25.66 Aligned_cols=102 Identities=16% Similarity=0.137 Sum_probs=55.7
Q ss_pred EeecCChhHHHHHHHHHHHhcCCCCeEEEEEEecCCCCCCC--CCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHh
Q 024855 115 VAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPS--PLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFLDTC 192 (261)
Q Consensus 115 VaVDgSe~S~~AL~~Al~~A~~~ga~L~LLHVv~~~~~~p~--~~g~~~~~~~~~e~~e~~~~~~~e~~~~~Lek~~~~~ 192 (261)
||..|--.--...+..+++|+..|..|- ..|. +|. .+|.-.- .++++++.. ...-.+..+..+|
T Consensus 39 IACGfHAGDp~~M~~Tv~lA~~~gV~IG---AHPg---ypDl~GFGRR~m-~~s~~el~~-------~v~YQiGAL~a~a 104 (252)
T 2x5e_A 39 LACGFHAGDPLTMRRAVELAVRHGVSIG---AHPA---YPDLSGFGRRSL-ACSAEEVHA-------MVLYQIGALDAFC 104 (252)
T ss_dssp EECSSSSCCHHHHHHHHHHHHHTTCEEE---EECC---CSCTTTTTCSCC-CCCHHHHHH-------HHHHHHHHHHHHH
T ss_pred hhccccCCCHHHHHHHHHHHHHcCCeee---cCCC---CCcccCCCCCCC-CCCHHHHHH-------HHHHHHHHHHHHH
Confidence 4555544444455566666666666433 2222 221 2332111 234443332 2233344555667
Q ss_pred hcCCCcEEEEEEE---------cCChHHHHHHhhhhCCCcEEEECCC
Q 024855 193 SQSKVMVDTVLIE---------SDLVAKAILDLIPVLNIRKLVVGTT 230 (261)
Q Consensus 193 ~~~gV~ve~~vie---------Gd~~aeaIv~~A~e~~aDLIVmGsr 230 (261)
+..|.++..+--. ....+++|++.++..+.+|++||-.
T Consensus 105 ~~~G~~l~hVKPHGALYN~~~~d~~~A~av~~av~~~d~~L~l~~l~ 151 (252)
T 2x5e_A 105 RSLGTQVAYVKPHGALYNDLVGDDELLRAVLDACAAYRKGLPLMVLA 151 (252)
T ss_dssp HHTTCCCCEECCCHHHHHHHTTCHHHHHHHHHHHHHHCTTCCEEEEC
T ss_pred HHcCCEeEEeccCHHHHHHHhhCHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 7778776533111 2357899999999999999999854
No 145
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=22.83 E-value=93 Score=24.77 Aligned_cols=33 Identities=12% Similarity=0.102 Sum_probs=21.7
Q ss_pred cCCCcEEEEEEEcCChHHHHHHhhhh----CCCcEEEE
Q 024855 194 QSKVMVDTVLIESDLVAKAILDLIPV----LNIRKLVV 227 (261)
Q Consensus 194 ~~gV~ve~~vieGd~~aeaIv~~A~e----~~aDLIVm 227 (261)
+.|+++....+..|++ +.|.+..++ .++|+||.
T Consensus 42 ~~G~~v~~~~iv~Dd~-~~i~~~l~~~~~~~~~DlVit 78 (169)
T 1y5e_A 42 EAGHKVTSYEIVKDDK-ESIQQAVLAGYHKEDVDVVLT 78 (169)
T ss_dssp HHTCEEEEEEEECSSH-HHHHHHHHHHHTCTTCSEEEE
T ss_pred HCCCeEeEEEEeCCCH-HHHHHHHHHHHhcCCCCEEEE
Confidence 3477777666667773 666655443 37899886
No 146
>2uxq_A Isocitrate dehydrogenase native; psychrophilic, cold adaptation, thermal stability, oxidoreductase; HET: SO4 PEG; 1.75A {Desulfotalea psychrophila} PDB: 2uxr_A*
Probab=22.75 E-value=72 Score=29.66 Aligned_cols=25 Identities=4% Similarity=-0.087 Sum_probs=20.4
Q ss_pred hhHHHHHHHHHHHhcCCCCeEEEEE
Q 024855 121 QSSMDALSWTLRHAVNPSTLIFLIH 145 (261)
Q Consensus 121 e~S~~AL~~Al~~A~~~ga~L~LLH 145 (261)
+.+.+.+++|.++|.+++.+|+++|
T Consensus 184 ~~~eRiar~AFe~A~~r~~kVt~v~ 208 (402)
T 2uxq_A 184 ASIGHFARACFEYSLDQKIDCWFAT 208 (402)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEEE
Confidence 5788888888888886666788888
No 147
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=22.69 E-value=3e+02 Score=22.76 Aligned_cols=43 Identities=9% Similarity=-0.006 Sum_probs=25.1
Q ss_pred HHHHhhcCCCcEEEEEEEcCC-hHHHHHHhhhhCCCcEEEECCC
Q 024855 188 FLDTCSQSKVMVDTVLIESDL-VAKAILDLIPVLNIRKLVVGTT 230 (261)
Q Consensus 188 ~~~~~~~~gV~ve~~vieGd~-~aeaIv~~A~e~~aDLIVmGsr 230 (261)
+.+.+++.|+.+......++. ....+++.....++|-||+-..
T Consensus 37 i~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~ 80 (303)
T 3kke_A 37 VQMAASGHSTDVLLGQIDAPPRGTQQLSRLVSEGRVDGVLLQRR 80 (303)
T ss_dssp HHHHHHHTTCCEEEEECCSTTHHHHHHHHHHHSCSSSEEEECCC
T ss_pred HHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCcEEEEecC
Confidence 334455667776543332322 1234667777788998888654
No 148
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=22.60 E-value=70 Score=23.99 Aligned_cols=54 Identities=11% Similarity=-0.002 Sum_probs=29.5
Q ss_pred hhcCCCcEEEEEEEcCChHHHHHHhhhhCCCcEEEECCC-CCCcccccccceeccHHHHHhccCCcceeeC
Q 024855 192 CSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTT-KSSLRFHFHSINFNGIGTLILFYFSILLFCF 261 (261)
Q Consensus 192 ~~~~gV~ve~~vieGd~~aeaIv~~A~e~~aDLIVmGsr-~sgl~~~~r~l~lGSVA~~Vlr~A~ipv~~~ 261 (261)
+++.|++++..-..-.. +-++.+ ++|+|++|-+ +.-+.+ -.+....-.+||..|
T Consensus 30 a~~~gi~v~i~a~~~~~----~~~~~~--~~DvvLLgPQV~y~~~~----------ik~~~~~~~ipV~vI 84 (108)
T 3nbm_A 30 ANLTEVRVIANSGAYGA----HYDIMG--VYDLIILAPQVRSYYRE----------MKVDAERLGIQIVAT 84 (108)
T ss_dssp HHHHTCSEEEEEEETTS----CTTTGG--GCSEEEECGGGGGGHHH----------HHHHHTTTTCEEEEC
T ss_pred HHHCCCceEEEEcchHH----HHhhcc--CCCEEEEChHHHHHHHH----------HHHHhhhcCCcEEEe
Confidence 44457887754332222 223333 4899999988 554332 123334446777654
No 149
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=22.55 E-value=1.4e+02 Score=25.05 Aligned_cols=64 Identities=8% Similarity=0.039 Sum_probs=32.0
Q ss_pred HHHHhhcCCCcEEEEEEEcCChHH--HHHHhhhhCCCcEEEECCCCCCcccccccceeccHHHHHhccCCcceeeC
Q 024855 188 FLDTCSQSKVMVDTVLIESDLVAK--AILDLIPVLNIRKLVVGTTKSSLRFHFHSINFNGIGTLILFYFSILLFCF 261 (261)
Q Consensus 188 ~~~~~~~~gV~ve~~vieGd~~ae--aIv~~A~e~~aDLIVmGsr~sgl~~~~r~l~lGSVA~~Vlr~A~ipv~~~ 261 (261)
+.+.+++.|+.+..... ..+..+ ..++.....++|-||+......... -.-+-++...+||+++
T Consensus 25 i~~~a~~~g~~~~~~~~-~~~~~~~~~~i~~~~~~~vdgiIi~~~~~~~~~---------~~~~~~~~~giPvV~~ 90 (330)
T 3uug_A 25 IVKQLQEAGYKTDLQYA-DDDIPNQLSQIENMVTKGVKVLVIASIDGTTLS---------DVLKQAGEQGIKVIAY 90 (330)
T ss_dssp HHHHHHHTTCEEEEEEC-TTCHHHHHHHHHHHHHHTCSEEEECCSSGGGGH---------HHHHHHHHTTCEEEEE
T ss_pred HHHHHHHcCCEEEEeeC-CCCHHHHHHHHHHHHHcCCCEEEEEcCCchhHH---------HHHHHHHHCCCCEEEE
Confidence 33345556776653322 233222 3344444568998888665321111 1112345667888764
No 150
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=22.52 E-value=2.2e+02 Score=23.52 Aligned_cols=43 Identities=7% Similarity=-0.015 Sum_probs=22.8
Q ss_pred HHHHhhcCCCcEEEEEEEcCChHHHHHHhhhhCCCcEEEECCC
Q 024855 188 FLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTT 230 (261)
Q Consensus 188 ~~~~~~~~gV~ve~~vieGd~~aeaIv~~A~e~~aDLIVmGsr 230 (261)
+.+.+++.|+.+......++.-....++.....++|-||+-..
T Consensus 33 i~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 75 (289)
T 3k9c_A 33 IYAAATRRGYDVMLSAVAPSRAEKVAVQALMRERCEAAILLGT 75 (289)
T ss_dssp HHHHHHHTTCEEEEEEEBTTBCHHHHHHHHTTTTEEEEEEETC
T ss_pred HHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHhCCCCEEEEECC
Confidence 3334555676655433333221344555555667887777544
No 151
>3gxq_A Putative regulator of transfer genes ARTA; ribbon-helix-helix, plasmid, DNA binding protein/DNA complex; HET: DNA; 2.35A {Staphylococcus aureus subsp}
Probab=22.41 E-value=61 Score=20.94 Aligned_cols=28 Identities=11% Similarity=0.114 Sum_probs=20.6
Q ss_pred cEEEEEEEcCChHHHHHHhhhhCCCcEE
Q 024855 198 MVDTVLIESDLVAKAILDLIPVLNIRKL 225 (261)
Q Consensus 198 ~ve~~vieGd~~aeaIv~~A~e~~aDLI 225 (261)
++.-+++...+..+.|++||++.+.|-+
T Consensus 11 kvslhllvdpdmkdeiikyaqekdfdnv 38 (54)
T 3gxq_A 11 KVSLHLLVDPDMKDEIIKYAQEKDFDNV 38 (54)
T ss_dssp CEEEEEEECHHHHHHHHHHHHHHSTTCH
T ss_pred eeEEEEeeCCchhHHHHHHHHHccchhH
Confidence 4555555555678999999999888743
No 152
>1mvl_A PPC decarboxylase athal3A; flavoprotein, active site mutant C175S; HET: FMN; 2.00A {Arabidopsis thaliana} SCOP: c.34.1.1 PDB: 1mvn_A* 1e20_A*
Probab=22.21 E-value=97 Score=26.05 Aligned_cols=35 Identities=6% Similarity=-0.050 Sum_probs=26.4
Q ss_pred CCCeEEEeecCChhHHHHHHHHHHHhcCCCCeEEEEE
Q 024855 109 EEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIH 145 (261)
Q Consensus 109 ~~kkILVaVDgSe~S~~AL~~Al~~A~~~ga~L~LLH 145 (261)
..+||+|++-|+-.+.+++++.-.+. +.+ +++++-
T Consensus 18 ~~k~IllgvTGsiaa~k~~~ll~~L~-~~g-~V~vv~ 52 (209)
T 1mvl_A 18 RKPRVLLAASGSVAAIKFGNLCHCFT-EWA-EVRAVV 52 (209)
T ss_dssp -CCEEEEEECSSGGGGGHHHHHHHHH-TTS-EEEEEE
T ss_pred CCCEEEEEEeCcHHHHHHHHHHHHHh-cCC-CEEEEE
Confidence 45799999999999999988876654 455 665553
No 153
>3bvp_A INT, TP901-1 integrase; DNA recombinase, recombination; 2.10A {Lactococcus phage tp901-1}
Probab=22.09 E-value=2.3e+02 Score=21.18 Aligned_cols=41 Identities=7% Similarity=0.022 Sum_probs=27.6
Q ss_pred HHhhcCCCcEEEEEEE-c-------CChHHHHHHhhhhCCCcEEEECCC
Q 024855 190 DTCSQSKVMVDTVLIE-S-------DLVAKAILDLIPVLNIRKLVVGTT 230 (261)
Q Consensus 190 ~~~~~~gV~ve~~vie-G-------d~~aeaIv~~A~e~~aDLIVmGsr 230 (261)
+.|+..|+.+..+..+ | .+--..+++.+++..+|.||+-.-
T Consensus 32 ~~a~~~g~~~~~~~~D~g~Sg~~~~Rp~l~~ll~~~~~g~~d~lvv~~l 80 (138)
T 3bvp_A 32 KYAEAMGWQVSDTYTDAGFSGAKLERPAMQRLINDIENKAFDTVLVYKL 80 (138)
T ss_dssp HHHHHTTCEEEEEEEEETCCSSSSCCHHHHHHHHGGGGTSCSEEEESSH
T ss_pred HHHHHCCCEEEEEEEeCCCcCCCCCCHHHHHHHHHHHhCCCCEEEEEeC
Confidence 3455667776544432 2 233467889999989999999775
No 154
>3ty4_A Probable homoisocitrate dehydrogenase; B-hydroxyacid oxidative decarboxylase, amino-acid biosynthes lysine biosynthesis; 1.55A {Schizosaccharomyces pombe} SCOP: c.77.1.0 PDB: 3ty3_A
Probab=22.09 E-value=53 Score=30.28 Aligned_cols=60 Identities=22% Similarity=0.233 Sum_probs=33.9
Q ss_pred CCCccccccccccceeeecccCCCCCCCCCeEEEeecC---C-hhHHHHHHHHHHHhcCC-------------CCeEEEE
Q 024855 82 PMPLAPIKEEIESSFFSFDVANGNGTQEEDIIYVAVGK---S-QSSMDALSWTLRHAVNP-------------STLIFLI 144 (261)
Q Consensus 82 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~kkILVaVDg---S-e~S~~AL~~Al~~A~~~-------------ga~L~LL 144 (261)
|+.++.+||-.++.-|-..-..... .... +++|. + +.+.+.+++|.++|+++ ..+|+++
T Consensus 123 ~vD~vivREnTeG~Y~g~e~~~~~~--~~~~--~a~~~~~~Tr~~~eRIar~AFe~A~~r~~~~~~~~~~~~~rkkVt~v 198 (366)
T 3ty4_A 123 PVDLVIVRENTECLYVKEERMVQNT--PGKR--VAEAIRRISEEASTKIGKMAFEIAKSRQKIRESGTYSIHKKPLVTII 198 (366)
T ss_dssp CCEEEEEEECSCBGGGCCEEEEECC--TTCC--EEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCSSCEEEEE
T ss_pred CCcEEEEeeCCCCEeecCcceeccC--CCCc--eEEEEEEecHHHHHHHHHHHHHHHHhcCccccccccccCCCCeEEEE
Confidence 4668888998886554111000000 1112 33342 2 46777778888877754 5678888
Q ss_pred E
Q 024855 145 H 145 (261)
Q Consensus 145 H 145 (261)
|
T Consensus 199 ~ 199 (366)
T 3ty4_A 199 H 199 (366)
T ss_dssp E
T ss_pred E
Confidence 8
No 155
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=21.85 E-value=1.9e+02 Score=23.56 Aligned_cols=43 Identities=9% Similarity=0.000 Sum_probs=22.1
Q ss_pred HHHHHhhcCCCcEEEEEEEcCChH--HHHHHhhhhCCCcEEEECCC
Q 024855 187 KFLDTCSQSKVMVDTVLIESDLVA--KAILDLIPVLNIRKLVVGTT 230 (261)
Q Consensus 187 k~~~~~~~~gV~ve~~vieGd~~a--eaIv~~A~e~~aDLIVmGsr 230 (261)
.+.+.+++.|+.+..... ..+.. ..+++.....++|-||+-..
T Consensus 28 gi~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~l~~~~vdgiIi~~~ 72 (276)
T 3jy6_A 28 GISSILESRGYIGVLFDA-NADIEREKTLLRAIGSRGFDGLILQSF 72 (276)
T ss_dssp HHHHHHHTTTCEEEEEEC-TTCHHHHHHHHHHHHTTTCSEEEEESS
T ss_pred HHHHHHHHCCCEEEEEeC-CCCHHHHHHHHHHHHhCCCCEEEEecC
Confidence 333445556666543222 22221 24555556667887777554
No 156
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=21.72 E-value=1.2e+02 Score=26.36 Aligned_cols=33 Identities=6% Similarity=-0.020 Sum_probs=15.7
Q ss_pred cCCCcEEEEEEEcCChHHHHHHhhhhCCCcEEEE
Q 024855 194 QSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVV 227 (261)
Q Consensus 194 ~~gV~ve~~vieGd~~aeaIv~~A~e~~aDLIVm 227 (261)
+.+++++....+...-+..+++.+.+ ++|+||+
T Consensus 37 ~~~~~~~~~~t~~~~~a~~~~~~~~~-~~d~vv~ 69 (304)
T 3s40_A 37 AAFPDLHILHTKEQGDATKYCQEFAS-KVDLIIV 69 (304)
T ss_dssp HHCSEEEEEECCSTTHHHHHHHHHTT-TCSEEEE
T ss_pred HcCCeEEEEEccCcchHHHHHHHhhc-CCCEEEE
Confidence 33555554433333334455554433 5666554
No 157
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=21.57 E-value=2.1e+02 Score=22.56 Aligned_cols=43 Identities=7% Similarity=-0.047 Sum_probs=26.4
Q ss_pred HHHHHhhhhCCCcEEEECCCCCCcccccccceeccHHHHHhccCCcceee
Q 024855 211 KAILDLIPVLNIRKLVVGTTKSSLRFHFHSINFNGIGTLILFYFSILLFC 260 (261)
Q Consensus 211 eaIv~~A~e~~aDLIVmGsr~sgl~~~~r~l~lGSVA~~Vlr~A~ipv~~ 260 (261)
+..++...+..+|+|++.-.-.+... + .+...+-+..++||++
T Consensus 38 ~~al~~~~~~~~dlvllD~~l~~~~g----~---~~~~~l~~~~~~~ii~ 80 (230)
T 2oqr_A 38 PAALAEFDRAGADIVLLDLMLPGMSG----T---DVCKQLRARSSVPVIM 80 (230)
T ss_dssp HHHHHHHHHHCCSEEEEESSCSSSCH----H---HHHHHHHHHCSCSEEE
T ss_pred HHHHHHHhccCCCEEEEECCCCCCCH----H---HHHHHHHcCCCCCEEE
Confidence 55556667778999999987433221 1 2344444445677765
No 158
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=21.45 E-value=1.4e+02 Score=23.26 Aligned_cols=39 Identities=23% Similarity=0.338 Sum_probs=22.0
Q ss_pred hhcCCCcEEEEEEEcC-ChHHHHHHhhhhCCCcEEEECCC-CCC
Q 024855 192 CSQSKVMVDTVLIESD-LVAKAILDLIPVLNIRKLVVGTT-KSS 233 (261)
Q Consensus 192 ~~~~gV~ve~~vieGd-~~aeaIv~~A~e~~aDLIVmGsr-~sg 233 (261)
+.+.|++++..-+... ++ ..+...+. ++|.||+|+. ..|
T Consensus 29 l~~~g~~v~~~~~~~~~~~-~~~~~~~~--~~d~ii~Gspty~g 69 (159)
T 3fni_A 29 ITKTGVGVDVVDLGAAVDL-QELRELVG--RCTGLVIGMSPAAS 69 (159)
T ss_dssp HHHTTCEEEEEESSSCCCH-HHHHHHHH--TEEEEEEECCBTTS
T ss_pred HHHCCCeEEEEECcCcCCH-HHHHHHHH--hCCEEEEEcCcCCC
Confidence 3445776654323223 43 44544333 4799999999 444
No 159
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=21.44 E-value=64 Score=28.39 Aligned_cols=44 Identities=11% Similarity=-0.006 Sum_probs=29.4
Q ss_pred HHHHHhhhhCCCcEEEECCCCCCcccccccceeccHHHHHhccCCcceeeC
Q 024855 211 KAILDLIPVLNIRKLVVGTTKSSLRFHFHSINFNGIGTLILFYFSILLFCF 261 (261)
Q Consensus 211 eaIv~~A~e~~aDLIVmGsr~sgl~~~~r~l~lGSVA~~Vlr~A~ipv~~~ 261 (261)
..+++.++++++|++|+.+-..++- +-.-|...+..+.+|++.|
T Consensus 54 ~~~~~~~~~~~pDfvI~isPN~a~P-------GP~~ARE~l~~~~iP~IvI 97 (283)
T 1qv9_A 54 EMALDIAEDFEPDFIVYGGPNPAAP-------GPSKAREMLADSEYPAVII 97 (283)
T ss_dssp HHHHHHHHHHCCSEEEEECSCTTSH-------HHHHHHHHHHTSSSCEEEE
T ss_pred HHhhhhhhhcCCCEEEEECCCCCCC-------CchHHHHHHHhCCCCEEEE
Confidence 3345556788888888888765542 2356777777777777653
No 160
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=21.42 E-value=2.1e+02 Score=19.72 Aligned_cols=24 Identities=4% Similarity=-0.006 Sum_probs=17.2
Q ss_pred HHHHHHhhhhCCCcEEEECCCCCC
Q 024855 210 AKAILDLIPVLNIRKLVVGTTKSS 233 (261)
Q Consensus 210 aeaIv~~A~e~~aDLIVmGsr~sg 233 (261)
+...++...+..+|+|++.-.-.+
T Consensus 34 ~~~a~~~~~~~~~dlvi~D~~l~~ 57 (124)
T 1mb3_A 34 GLSALSIARENKPDLILMDIQLPE 57 (124)
T ss_dssp HHHHHHHHHHHCCSEEEEESBCSS
T ss_pred HHHHHHHHhcCCCCEEEEeCCCCC
Confidence 355556667778999999987433
No 161
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=21.39 E-value=95 Score=25.33 Aligned_cols=45 Identities=16% Similarity=-0.076 Sum_probs=28.1
Q ss_pred HHHHHHHHHhhcCCCcEEEEEEE-cCChHHHHHHhhhhCCCcEEEECCC
Q 024855 183 QLLQKFLDTCSQSKVMVDTVLIE-SDLVAKAILDLIPVLNIRKLVVGTT 230 (261)
Q Consensus 183 ~~Lek~~~~~~~~gV~ve~~vie-Gd~~aeaIv~~A~e~~aDLIVmGsr 230 (261)
.+++.+.+.+++.|.+++..-+. ++++ +.+.+...+ +|.||+++-
T Consensus 34 ~l~~~~~~~~~~~g~~v~~~dL~~~~d~-~~~~~~l~~--AD~iV~~~P 79 (204)
T 2amj_A 34 TLTEVADGTLRDLGHDVRIVRADSDYDV-KAEVQNFLW--ADVVIWQMP 79 (204)
T ss_dssp HHHHHHHHHHHHTTCEEEEEESSSCCCH-HHHHHHHHH--CSEEEEEEE
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCccccH-HHHHHHHHh--CCEEEEECC
Confidence 34445555555557777654332 3454 666666664 899999997
No 162
>1vb5_A Translation initiation factor EIF-2B; 2.20A {Pyrococcus horikoshii} SCOP: c.124.1.5
Probab=21.32 E-value=1.7e+02 Score=25.42 Aligned_cols=54 Identities=11% Similarity=0.033 Sum_probs=33.7
Q ss_pred CCCcEEEEEEEcCChHHHHHHhhhhCCCcEEEECCCC----CCcccccccceeccHHHHHhccCCcceee
Q 024855 195 SKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTTK----SSLRFHFHSINFNGIGTLILFYFSILLFC 260 (261)
Q Consensus 195 ~gV~ve~~vieGd~~aeaIv~~A~e~~aDLIVmGsr~----sgl~~~~r~l~lGSVA~~Vlr~A~ipv~~ 260 (261)
.|+++... ++...-.+. + ++|++++|+.+ .|+.. ..+........++..+||++
T Consensus 159 ~gI~vtli---~dsa~~~~m---~--~vd~vivGAd~i~~nG~v~n----kiGt~~iA~~A~~~~vp~~V 216 (276)
T 1vb5_A 159 SGIEFEVI---TDAQMGLFC---R--EASIAIVGADMITKDGYVVN----KAGTYLLALACHENAIPFYV 216 (276)
T ss_dssp TTCCEEEE---CGGGHHHHH---T--TCSEEEECCSEECTTSCEEE----ETTHHHHHHHHHHTTCCEEE
T ss_pred CCCCEEEE---cHHHHHHHH---c--cCCEEEEcccEEecCCCEee----chhHHHHHHHHHHcCCCEEE
Confidence 58887633 344333333 2 69999999993 34443 23344455667888899875
No 163
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=21.17 E-value=91 Score=25.68 Aligned_cols=43 Identities=0% Similarity=-0.171 Sum_probs=22.3
Q ss_pred HHHHHhhcCCCcEEEEEEEcCChH--HHHHHhhhhCCCcEEEECCC
Q 024855 187 KFLDTCSQSKVMVDTVLIESDLVA--KAILDLIPVLNIRKLVVGTT 230 (261)
Q Consensus 187 k~~~~~~~~gV~ve~~vieGd~~a--eaIv~~A~e~~aDLIVmGsr 230 (261)
.+.+.+++.|+.+...-. ..+.. ..+++.....++|-||+...
T Consensus 26 gi~~~a~~~g~~~~~~~~-~~~~~~~~~~~~~l~~~~vdgiIi~~~ 70 (291)
T 3l49_A 26 AQIAEIERLGGTAIALDA-GRNDQTQVSQIQTLIAQKPDAIIEQLG 70 (291)
T ss_dssp HHHHHHHHTTCEEEEEEC-TTCHHHHHHHHHHHHHHCCSEEEEESS
T ss_pred HHHHHHHHcCCEEEEEcC-CCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 333445556766543322 22322 33455555678888887543
No 164
>3a11_A Translation initiation factor EIF-2B, delta subun; isomerase, hexamer, rossmann fold; 2.50A {Thermococcus kodakaraensis} PDB: 3a9c_A* 3vm6_A*
Probab=21.03 E-value=1.4e+02 Score=26.98 Aligned_cols=37 Identities=11% Similarity=-0.024 Sum_probs=23.8
Q ss_pred CCCcEEEECCCC---CC-cccccccceeccHHHHHhccCCcceee
Q 024855 220 LNIRKLVVGTTK---SS-LRFHFHSINFNGIGTLILFYFSILLFC 260 (261)
Q Consensus 220 ~~aDLIVmGsr~---sg-l~~~~r~l~lGSVA~~Vlr~A~ipv~~ 260 (261)
.++|++++|+.+ .| +.. ..+...-.-+.|+..+||++
T Consensus 208 ~~Vd~VivGAd~V~anG~v~N----KiGT~~lAl~Ak~~~vPfyV 248 (338)
T 3a11_A 208 KMTDKVVMGADSITVNGAVIN----KIGTALIALTAKEHRVWTMI 248 (338)
T ss_dssp GGCSEEEECCSEECTTSCEEE----ETTHHHHHHHHHHTTCEEEE
T ss_pred HhCCEEEECccEEecCCCEee----cccHHHHHHHHHHcCCCEEE
Confidence 459999999993 33 333 23333444556788899875
No 165
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=20.78 E-value=2.5e+02 Score=20.40 Aligned_cols=22 Identities=5% Similarity=0.084 Sum_probs=17.2
Q ss_pred HHHHHHhhhhCCCcEEEECCCC
Q 024855 210 AKAILDLIPVLNIRKLVVGTTK 231 (261)
Q Consensus 210 aeaIv~~A~e~~aDLIVmGsr~ 231 (261)
.+..++...+..+|+||+...-
T Consensus 40 ~~~a~~~l~~~~~dlvi~d~~l 61 (154)
T 2rjn_A 40 PLDALEALKGTSVQLVISDMRM 61 (154)
T ss_dssp HHHHHHHHTTSCCSEEEEESSC
T ss_pred HHHHHHHHhcCCCCEEEEecCC
Confidence 3666677777889999999873
No 166
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=20.76 E-value=1.3e+02 Score=23.23 Aligned_cols=36 Identities=19% Similarity=0.331 Sum_probs=20.4
Q ss_pred hhcCCCcEEEEEEEcCChHHHHHHhhhhCCCcEEEECCC
Q 024855 192 CSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTT 230 (261)
Q Consensus 192 ~~~~gV~ve~~vieGd~~aeaIv~~A~e~~aDLIVmGsr 230 (261)
+.+.|++++..-+...++ +.+...+. ++|.||+|+.
T Consensus 25 l~~~g~~v~~~~~~~~~~-~~~~~~~~--~~d~ii~Gsp 60 (161)
T 3hly_A 25 LVKTGVAVEMVDLRAVDP-QELIEAVS--SARGIVLGTP 60 (161)
T ss_dssp HHHTTCCEEEEETTTCCH-HHHHHHHH--HCSEEEEECC
T ss_pred HHhCCCeEEEEECCCCCH-HHHHHHHH--hCCEEEEEcC
Confidence 344577765432323333 44444333 4799999999
No 167
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=20.75 E-value=2.4e+02 Score=23.50 Aligned_cols=25 Identities=8% Similarity=-0.093 Sum_probs=20.2
Q ss_pred EEEeecCChhHHHHHHHHHHHhcCC
Q 024855 113 IYVAVGKSQSSMDALSWTLRHAVNP 137 (261)
Q Consensus 113 ILVaVDgSe~S~~AL~~Al~~A~~~ 137 (261)
-.|.+|.-...+.|.+|.++.+...
T Consensus 102 ~~V~~D~~~~g~~a~~~l~~~~~~~ 126 (330)
T 3uug_A 102 YYATFDNFQVGVLQATSITDKLGLK 126 (330)
T ss_dssp EEEEECHHHHHHHHHHHHHHHHTGG
T ss_pred EEEEeCHHHHHHHHHHHHHHHhccc
Confidence 4788899889999999988876543
No 168
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=20.57 E-value=2.3e+02 Score=19.95 Aligned_cols=34 Identities=15% Similarity=-0.013 Sum_probs=19.2
Q ss_pred CCCcEEEEEEEcCChHHHHHHhhhhCCCcEEEECCCCC
Q 024855 195 SKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTTKS 232 (261)
Q Consensus 195 ~gV~ve~~vieGd~~aeaIv~~A~e~~aDLIVmGsr~s 232 (261)
.|+.+.. .....+++....+...+|+|++...-.
T Consensus 30 ~g~~v~~----~~~~~~a~~~~~~~~~~dlvi~D~~l~ 63 (136)
T 3hdv_A 30 RGIDAVG----ADGAEEARLYLHYQKRIGLMITDLRMQ 63 (136)
T ss_dssp TTCCEEE----ESSHHHHHHHHHHCTTEEEEEECSCCS
T ss_pred cCceEEE----eCCHHHHHHHHHhCCCCcEEEEeccCC
Confidence 3665532 234344444444443499999998843
No 169
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=20.55 E-value=2.5e+02 Score=20.39 Aligned_cols=22 Identities=9% Similarity=-0.071 Sum_probs=17.6
Q ss_pred HHHHHHhhhhCCCcEEEECCCC
Q 024855 210 AKAILDLIPVLNIRKLVVGTTK 231 (261)
Q Consensus 210 aeaIv~~A~e~~aDLIVmGsr~ 231 (261)
.+..++...+..+|+||+...-
T Consensus 36 ~~~a~~~l~~~~~dliild~~l 57 (155)
T 1qkk_A 36 ATEALAGLSADFAGIVISDIRM 57 (155)
T ss_dssp HHHHHHTCCTTCCSEEEEESCC
T ss_pred HHHHHHHHHhCCCCEEEEeCCC
Confidence 4666777788889999999873
No 170
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=20.53 E-value=2.1e+02 Score=19.49 Aligned_cols=45 Identities=2% Similarity=-0.098 Sum_probs=24.8
Q ss_pred ChHHHHHHhhhhCCCcEEEECCCCCCcccccccceeccHHHHHhccCCcceee
Q 024855 208 LVAKAILDLIPVLNIRKLVVGTTKSSLRFHFHSINFNGIGTLILFYFSILLFC 260 (261)
Q Consensus 208 ~~aeaIv~~A~e~~aDLIVmGsr~sgl~~~~r~l~lGSVA~~Vlr~A~ipv~~ 260 (261)
...+++ ....+..+|+|++.-.-.+... + ....++-+..++|+++
T Consensus 33 ~~~~~~-~~~~~~~~dlvi~D~~l~~~~g----~---~~~~~l~~~~~~~ii~ 77 (121)
T 1zh2_A 33 TLQRGL-LEAATRKPDLIILDLGLPDGDG----I---EFIRDLRQWSAVPVIV 77 (121)
T ss_dssp SHHHHH-HHHHHHCCSEEEEESEETTEEH----H---HHHHHHHTTCCCCEEE
T ss_pred CHHHHH-HHHhcCCCCEEEEeCCCCCCcH----H---HHHHHHHhCCCCcEEE
Confidence 333444 4455668999999877333221 1 2344444455677664
No 171
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii}
Probab=20.44 E-value=1.2e+02 Score=24.70 Aligned_cols=34 Identities=12% Similarity=-0.127 Sum_probs=26.9
Q ss_pred CCeEEEeecCChhHHHHHHHHHHHhcCCCCeEEEEEEe
Q 024855 110 EDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVF 147 (261)
Q Consensus 110 ~kkILVaVDgSe~S~~AL~~Al~~A~~~ga~L~LLHVv 147 (261)
.++|+|++.|...|.-++.++.+ .+.++..+|+.
T Consensus 6 ~~kv~v~~SGG~DS~~ll~ll~~----~g~~v~~~~v~ 39 (203)
T 3k32_A 6 LMDVHVLFSGGKDSSLSAVILKK----LGYNPHLITIN 39 (203)
T ss_dssp CEEEEEECCCSHHHHHHHHHHHH----TTEEEEEEEEE
T ss_pred CCeEEEEEECcHHHHHHHHHHHH----cCCCeEEEEEe
Confidence 46899999999999888866533 46789999985
No 172
>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Bacillus cereus}
Probab=20.34 E-value=88 Score=26.30 Aligned_cols=36 Identities=6% Similarity=-0.007 Sum_probs=26.5
Q ss_pred CCCeEEEeecCChhHHH-HHHHHHHHhcCCCCeEEEEE
Q 024855 109 EEDIIYVAVGKSQSSMD-ALSWTLRHAVNPSTLIFLIH 145 (261)
Q Consensus 109 ~~kkILVaVDgSe~S~~-AL~~Al~~A~~~ga~L~LLH 145 (261)
..+||+|++-||-.+.+ +++..-.+. +.|.+++++-
T Consensus 4 ~~k~IllgiTGsiaayk~~~~ll~~L~-~~g~eV~vv~ 40 (207)
T 3mcu_A 4 KGKRIGFGFTGSHCTYEEVMPHLEKLI-AEGAEVRPVV 40 (207)
T ss_dssp TTCEEEEEECSCGGGGTTSHHHHHHHH-HTTCEEEEEE
T ss_pred CCCEEEEEEEChHHHHHHHHHHHHHHH-hCCCEEEEEE
Confidence 35799999999987776 887765544 4688766654
No 173
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=20.11 E-value=89 Score=25.96 Aligned_cols=40 Identities=10% Similarity=0.082 Sum_probs=20.9
Q ss_pred HHHhhhhCCCcEEEECCCCCCcccccccceeccHHHHHhccCCcceeeC
Q 024855 213 ILDLIPVLNIRKLVVGTTKSSLRFHFHSINFNGIGTLILFYFSILLFCF 261 (261)
Q Consensus 213 Iv~~A~e~~aDLIVmGsr~sgl~~~~r~l~lGSVA~~Vlr~A~ipv~~~ 261 (261)
.++.....++|-||+......... -.-+-++...+||+++
T Consensus 49 ~i~~l~~~~vdgiii~~~~~~~~~---------~~~~~~~~~~iPvV~~ 88 (306)
T 8abp_A 49 AIDSLAASGAKGFVICTPDPKLGS---------AIVAKARGYDMKVIAV 88 (306)
T ss_dssp HHHHHHHTTCCEEEEECSCGGGHH---------HHHHHHHHTTCEEEEE
T ss_pred HHHHHHHcCCCEEEEeCCCchhhH---------HHHHHHHHCCCcEEEe
Confidence 344445567888887654222111 1112345567888764
No 174
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=20.00 E-value=1.5e+02 Score=23.71 Aligned_cols=35 Identities=11% Similarity=0.080 Sum_probs=22.4
Q ss_pred hhcCCCcEEEEEEEcCChHHHHHHhhhh----CCCcEEEE
Q 024855 192 CSQSKVMVDTVLIESDLVAKAILDLIPV----LNIRKLVV 227 (261)
Q Consensus 192 ~~~~gV~ve~~vieGd~~aeaIv~~A~e----~~aDLIVm 227 (261)
+++.|+++....+..|+. +.|.+..++ .++|+||.
T Consensus 37 L~~~G~~v~~~~iv~Dd~-~~i~~~l~~a~~~~~~DlVit 75 (172)
T 1mkz_A 37 AQEAGHHVVDKAIVKENR-YAIRAQVSAWIASDDVQVVLI 75 (172)
T ss_dssp HHHTTCEEEEEEEECSCH-HHHHHHHHHHHHSSSCCEEEE
T ss_pred HHHCCCeEeEEEEeCCCH-HHHHHHHHHHHhcCCCCEEEe
Confidence 344588877666667773 666554443 25899887
Done!