BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024857
(261 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CIQ|A Chain A, Structure-Based Functional Annotation: Yeast Ymr099c Codes
For A D-Hexose-6-Phosphate Mutarotase
Length = 297
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/216 (29%), Positives = 93/216 (43%), Gaps = 16/216 (7%)
Query: 29 LEKHGFARSRVWSIDPDPPPFSANSSSQACVDLILK---HSEEEVKIWPHRYEFRLRITL 85
L +HG AR+ W + V LK + E K+WP Y L + L
Sbjct: 79 LPQHGLARNSTWEF------LGQTKENPPTVQFGLKPEIANPELTKLWPMDYLLILTVEL 132
Query: 86 GPGGDLMLTSRIRNTNTDGKSXXXXXXXXXXXXVSDISEVRVEGLETLDYLDNLKDKERF 145
G D + T+ + K + DI V L + D L KE +
Sbjct: 133 G--SDYLKTAIEVENTSSSKELKFNWLFHTYFRIEDIEGTMVSNLAGMKLYDQLL-KESY 189
Query: 146 TEQGDAITFESEVDKVY--LSTPTKIAILDHERKRTFVLRKDGLPDAVVWNPWDKKAKAM 203
++ +TF E D +Y +S I I+D + + L++ LPD VVWNPW +K++ M
Sbjct: 190 VDKHPVVTFNQETDVIYQNVSAERAIQIVD-KGVQIHTLKRYNLPDTVVWNPWIEKSQGM 248
Query: 204 ADFGDDE-YKHMLCVEAACVEKPIILKPGEEWRGRQ 238
ADF Y+ M+C+E V I L PG++W Q
Sbjct: 249 ADFEPKTGYQQMICIEPGHVHDFISLAPGKKWNAYQ 284
>pdb|2CIR|A Chain A, Structure-Based Functional Annotation: Yeast Ymr099c Codes
For A D-Hexose-6-Phosphate Mutarotase. Complex With
Glucose-6-Phosphate
pdb|2CIS|A Chain A, Structure-Based Functional Annotation: Yeast Ymr099c Codes
For A D-Hexose-6-Phosphate Mutarotase. Complex With
Tagatose-6-Phosphate
Length = 297
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/216 (29%), Positives = 93/216 (43%), Gaps = 16/216 (7%)
Query: 29 LEKHGFARSRVWSIDPDPPPFSANSSSQACVDLILK---HSEEEVKIWPHRYEFRLRITL 85
L +HG AR+ W + V LK + E K+WP Y L + L
Sbjct: 79 LPQHGLARNSTWEF------LGQTKENPPTVQFGLKPEIANPELTKLWPMDYLLILTVEL 132
Query: 86 GPGGDLMLTSRIRNTNTDGKSXXXXXXXXXXXXVSDISEVRVEGLETLDYLDNLKDKERF 145
G D + T+ + K + DI V L + D L KE +
Sbjct: 133 G--SDYLKTAIEVENTSSSKELKFNWLFHTYFRIEDIEGTMVSNLAGMKLYDQLL-KESY 189
Query: 146 TEQGDAITFESEVDKVY--LSTPTKIAILDHERKRTFVLRKDGLPDAVVWNPWDKKAKAM 203
++ +TF E D +Y +S I I+D + + L++ LPD VVWNPW +K++ M
Sbjct: 190 VDKHPVVTFNQETDVIYQNVSAERAIQIVD-KGVQIHTLKRYNLPDTVVWNPWIEKSQGM 248
Query: 204 ADFGDDE-YKHMLCVEAACVEKPIILKPGEEWRGRQ 238
ADF Y+ M+C+E V I L PG++W Q
Sbjct: 249 ADFEPKTGYQQMICIEPGHVHDFISLAPGKKWNAYQ 284
>pdb|2HTA|A Chain A, Crystal Structure Of A Putative Mutarotase (Yead) From
Salmonella Typhimurium In Orthorhombic Form
pdb|2HTA|B Chain B, Crystal Structure Of A Putative Mutarotase (Yead) From
Salmonella Typhimurium In Orthorhombic Form
pdb|2HTB|A Chain A, Crystal Structure Of A Putative Mutarotase (Yead) From
Salmonella Typhimurium In Monoclinic Form
pdb|2HTB|B Chain B, Crystal Structure Of A Putative Mutarotase (Yead) From
Salmonella Typhimurium In Monoclinic Form
pdb|2HTB|C Chain C, Crystal Structure Of A Putative Mutarotase (Yead) From
Salmonella Typhimurium In Monoclinic Form
pdb|2HTB|D Chain D, Crystal Structure Of A Putative Mutarotase (Yead) From
Salmonella Typhimurium In Monoclinic Form
Length = 309
Score = 63.9 bits (154), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 79/204 (38%), Gaps = 18/204 (8%)
Query: 24 ANHGSLEKHGFARSRVWSIDPDPPPFSANSSSQACVDLI--LKHSEEEVKIWPHRYEFRL 81
A L HGFAR+ W++ A++ V L L+ SE K WPH +
Sbjct: 102 AAQQGLPSHGFARNLPWAL-------KAHNEDDNGVMLTFELQSSEATRKYWPHDFTLLA 154
Query: 82 RITLGPGGDLMLTSRIRNTNTDGKSXXXXXXXXXXXXVSDISEVRVEGLETLDYLDNLKD 141
R +G ++ L + T V DI+ V+V GL ++D + D
Sbjct: 155 RFKVGKTCEIELEAHGEFATTSA--------LHSYFNVGDIANVKVSGLGD-RFIDKVND 205
Query: 142 KERFTEQGDAITFESEVDKVYLSTPTKIAILDHERKRTFVLRKDGLPDAVVWNPWDKKAK 201
+ TF D+VYL+ I D RT + + V WNP +
Sbjct: 206 AKEGVLTDGIQTFPDRTDRVYLNPEACSVIHDATLNRTIDVVHHHHLNVVGWNPGPALSV 265
Query: 202 AMADFGDDEYKHMLCVEAACVEKP 225
+M D DD YK +CVE P
Sbjct: 266 SMGDMPDDGYKTFVCVETVYATAP 289
>pdb|1JOV|A Chain A, Crystal Structure Analysis Of Hi1317
Length = 270
Score = 53.9 bits (128), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 57/115 (49%), Gaps = 10/115 (8%)
Query: 119 VSDISEVRVEGL-ETLDYLDNLKDKERFTEQGDAITFESEVDKVYLSTPTKIAILDHERK 177
+ DI++V V+GL ET ++L ++ I+ VD +Y + + ILD
Sbjct: 155 IGDINQVEVQGLPETC--FNSLNQQQENVPSPRHIS--ENVDCIYSAENMQNQILDKSFN 210
Query: 178 RTFVLRKDGLPDAVVWNPWDKKAKAMADFGDDEYKHMLCVEAACVEKPIILKPGE 232
RT L V+WNPW KK M++ G Y+ MLC+E A + +L+ GE
Sbjct: 211 RTIALHHHNASQFVLWNPWHKKTSGMSETG---YQKMLCLETARIHH--LLEFGE 260
>pdb|3K25|A Chain A, Crystal Structure Of Slr1438 Protein From Synechocystis
Sp. Pcc 6803, Northeast Structural Genomics Consortium
Target Sgr112
pdb|3K25|B Chain B, Crystal Structure Of Slr1438 Protein From Synechocystis
Sp. Pcc 6803, Northeast Structural Genomics Consortium
Target Sgr112
Length = 289
Score = 34.3 bits (77), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 7/83 (8%)
Query: 17 QSQFVEFANHGSLEKHGFARSRVWSIDPDPPPFSANSSSQACVDLILKHSEEEVKIWPHR 76
Q QF L++HGFAR W + + A +DL L H++ ++ +P
Sbjct: 76 QDQFNHAGKSYRLKQHGFARDLPWEV------IGQQTQDNARLDLRLSHNDATLEAFPFA 129
Query: 77 YEFRLRITLGPGGDLMLTSRIRN 99
+E L G L + RI N
Sbjct: 130 FELVFSYQLQ-GHSLRIEQRIAN 151
>pdb|3DCD|A Chain A, X-Ray Structure Of The Galactose Mutarotase Related Enzyme
Q5fkd7 From Lactobacillus Acidophilus At The Resolution
1.9a. Northeast Structural Genomics Consortium Target
Lar33.
pdb|3DCD|B Chain B, X-Ray Structure Of The Galactose Mutarotase Related Enzyme
Q5fkd7 From Lactobacillus Acidophilus At The Resolution
1.9a. Northeast Structural Genomics Consortium Target
Lar33
Length = 307
Score = 33.9 bits (76), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 9/54 (16%)
Query: 29 LEKHGFARSRVWSIDPDPPPFSANSSSQACVDLILKHSEEEVKIWPHRYEFRLR 82
L +HGFAR+ F + ++ + +LK +EE K++P ++EFR+
Sbjct: 70 LGQHGFARN---------ADFEVENHTKESITFLLKDNEETRKVYPFKFEFRVN 114
>pdb|2EUA|A Chain A, Structure And Mechanism Of Menf, The Menaquinone-Specific
Isochorismate Synthase From Escherichia Coli
pdb|2EUA|B Chain B, Structure And Mechanism Of Menf, The Menaquinone-Specific
Isochorismate Synthase From Escherichia Coli
pdb|3BZM|A Chain A, Crystal Structure Of Open Form Of Menaquinone-Specific
Isochorismate Synthase, Menf
pdb|3BZN|A Chain A, Crystal Structure Of Open Form Of Menaquinone-Specific
Isochorismate Synthase, Menf
Length = 431
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Query: 176 RKRTFVLRKDGLPDAVVWNPWDKKAKAMADF--GDD--EYKHMLCVEAAC 221
R+R LR + L V NP DK+A+ + ++ DD + ++ML VE C
Sbjct: 244 RRRDKALRTEALAGTVANNPDDKQAQQLGEWLMADDKNQRENMLVVEDIC 293
>pdb|1G8X|A Chain A, Structure Of A Genetically Engineered Molecular Motor
pdb|1G8X|B Chain B, Structure Of A Genetically Engineered Molecular Motor
Length = 1010
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 44/208 (21%), Positives = 80/208 (38%), Gaps = 21/208 (10%)
Query: 38 RVWSIDPDPPPFSANSSSQACVDLILKHSEEEVKIWPHRYEFRLRITLGPGGDLMLTSRI 97
R + + P+ P + +S Q D +LKH + I P +Y F + G L
Sbjct: 704 RYYLLAPNVPRDAEDS--QKATDAVLKH----LNIDPEQYRFGITKIFFRAGQLARIEEA 757
Query: 98 RNTNTDGKSXXXXXXXXXXXXVSDISEVRVEGLETLDYLDNLKDKERF---------TEQ 148
R + V I++ + LE+ D+ D+++ + F TE+
Sbjct: 758 REQRLGSEQTKSDYLKRANELVQWINDKQA-SLESRDFGDSIESVQSFMNAHKEYKKTEK 816
Query: 149 GDAITFESEVDKVYLSTPTKIAILDHERKRTFVLRKDGLPDAV--VWNPWDKKAKAMADF 206
SE++ +Y S TK+ ++ ++ FV P+ + W+ +K + A+
Sbjct: 817 PPKGQEVSELEAIYNSLQTKLRLI---KREPFVAPAGLTPNEIDSTWSALEKAEQEHAEA 873
Query: 207 GDDEYKHMLCVEAACVEKPIILKPGEEW 234
E K + + ILK E W
Sbjct: 874 LRIELKRQKKIAVLLQKYNRILKKLENW 901
>pdb|2FHQ|A Chain A, Crystal Structure Of General Stress Protein From
Bacteroides Thetaiotaomicron
pdb|2FHQ|B Chain B, Crystal Structure Of General Stress Protein From
Bacteroides Thetaiotaomicron
Length = 141
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 128 EGLETLDYLDNLKDKERFTEQGDAITFESEVDKV 161
+ L+T+D+L N K F E+GD++ EV+ V
Sbjct: 57 DSLKTIDFLSNPKAGLCFQEKGDSVALXGEVEVV 90
>pdb|3HDB|A Chain A, Crystal Structure Of Aahiv, A Metalloproteinase From Venom
Of Agkistrodon Acutus
Length = 417
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 41 SIDPDPPPFSANSSSQACVDLILKHSEEEVKIWP 74
SI P+P F +N S C D I+ H+ E + P
Sbjct: 168 SISPEPSKFFSNCSYIQCWDFIMNHNPECIDNEP 201
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,013,439
Number of Sequences: 62578
Number of extensions: 313532
Number of successful extensions: 586
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 572
Number of HSP's gapped (non-prelim): 10
length of query: 261
length of database: 14,973,337
effective HSP length: 97
effective length of query: 164
effective length of database: 8,903,271
effective search space: 1460136444
effective search space used: 1460136444
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)