BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024857
(261 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q40784|AAPC_CENCI Putative glucose-6-phosphate 1-epimerase OS=Cenchrus ciliaris PE=2
SV=1
Length = 329
Score = 392 bits (1008), Expect = e-108, Method: Compositional matrix adjust.
Identities = 182/239 (76%), Positives = 207/239 (86%)
Query: 22 EFANHGSLEKHGFARSRVWSIDPDPPPFSANSSSQACVDLILKHSEEEVKIWPHRYEFRL 81
+F HG+LE+HGFAR+R WSID DPPP N + +A VDLIL+ +EE++KIWPH +EFRL
Sbjct: 91 QFGTHGNLEQHGFARNRFWSIDNDPPPLPVNPAIKAFVDLILRPAEEDLKIWPHSFEFRL 150
Query: 82 RITLGPGGDLMLTSRIRNTNTDGKSFAFTFAYHTYFAVSDISEVRVEGLETLDYLDNLKD 141
R+ LGP GDL LTSRIRNTNTDG+ F++TFAYHTYF VSDISEVRVEGLET+DYLDNLK
Sbjct: 151 RVALGPSGDLSLTSRIRNTNTDGRPFSYTFAYHTYFFVSDISEVRVEGLETMDYLDNLKA 210
Query: 142 KERFTEQGDAITFESEVDKVYLSTPTKIAILDHERKRTFVLRKDGLPDAVVWNPWDKKAK 201
KERFTEQGDAI FESEVDKVYL+ P+KIAI+DHE+K+TFV+ K+GLPDAVVWNPWDKKAK
Sbjct: 211 KERFTEQGDAIVFESEVDKVYLAAPSKIAIIDHEKKKTFVVTKEGLPDAVVWNPWDKKAK 270
Query: 202 AMADFGDDEYKHMLCVEAACVEKPIILKPGEEWRGRQEISAVPSSYCSGQLDPKKVFQS 260
AM DFGD EYK+MLCVE A VEKPI LKPGEEWRGR +SAVPSSYCSGQLDP KV
Sbjct: 271 AMQDFGDAEYKNMLCVEPAAVEKPITLKPGEEWRGRIALSAVPSSYCSGQLDPLKVLHG 329
>sp|Q03161|YMY9_YEAST Glucose-6-phosphate 1-epimerase OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=YMR099C PE=1 SV=1
Length = 297
Score = 105 bits (262), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 68/216 (31%), Positives = 100/216 (46%), Gaps = 16/216 (7%)
Query: 29 LEKHGFARSRVWSIDPDPPPFSANSSSQACVDLILK---HSEEEVKIWPHRYEFRLRITL 85
L +HG AR+ W + V LK + E K+WP Y L + L
Sbjct: 79 LPQHGLARNSTWEF------LGQTKENPPTVQFGLKPEIANPELTKLWPMDYLLILTVEL 132
Query: 86 GPGGDLMLTSRIRNTNTDGKSFAFTFAYHTYFAVSDISEVRVEGLETLDYLDNLKDKERF 145
G D + T+ + K F + +HTYF + DI V L + D L KE +
Sbjct: 133 G--SDYLKTAIEVENTSSSKELKFNWLFHTYFRIEDIEGTMVSNLAGMKLYDQLL-KESY 189
Query: 146 TEQGDAITFESEVDKVY--LSTPTKIAILDHERKRTFVLRKDGLPDAVVWNPWDKKAKAM 203
++ +TF E D +Y +S I I+D + + L++ LPD VVWNPW +K++ M
Sbjct: 190 VDKHPVVTFNQETDVIYQNVSAERAIQIVD-KGVQIHTLKRYNLPDTVVWNPWIEKSQGM 248
Query: 204 ADFGDDE-YKHMLCVEAACVEKPIILKPGEEWRGRQ 238
ADF Y+ M+C+E V I L PG++W Q
Sbjct: 249 ADFEPKTGYQQMICIEPGHVHDFISLAPGKKWNAYQ 284
>sp|P39173|YEAD_ECOLI Putative glucose-6-phosphate 1-epimerase OS=Escherichia coli
(strain K12) GN=yeaD PE=1 SV=2
Length = 294
Score = 80.5 bits (197), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 80/197 (40%), Gaps = 14/197 (7%)
Query: 24 ANHGSLEKHGFARSRVWSIDPDPPPFSANSSSQACVDLILKHSEEEVKIWPHRYEFRLRI 83
A L HGFAR+ W++ + + L SEE K WPH +
Sbjct: 87 AAQQGLPAHGFARNLPWTLKS-----HHEDADGVALTFELTQSEETKKFWPHDFTLLAHF 141
Query: 84 TLGPGGDLMLTSRIRNTNTDGKSFAFTFAYHTYFAVSDISEVRVEGLETLDYLDNLKDKE 143
+G ++ L S F T A HTYF V DI++V V GL ++D + D +
Sbjct: 142 RVGKTCEIDLESH--------GEFETTSALHTYFNVGDIAKVSVSGLGD-RFIDKVNDAK 192
Query: 144 RFTEQGDAITFESEVDKVYLSTPTKIAILDHERKRTFVLRKDGLPDAVVWNPWDKKAKAM 203
TF D+VYL+ I D R + + V WNP + +M
Sbjct: 193 ENVLTDGIQTFPDRTDRVYLNPQDCSVINDEALNRIIAVGHQHHLNVVGWNPGPALSISM 252
Query: 204 ADFGDDEYKHMLCVEAA 220
D DD YK +CVE A
Sbjct: 253 GDMPDDGYKTFVCVETA 269
>sp|P44160|Y1317_HAEIN Putative glucose-6-phosphate 1-epimerase OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_1317
PE=3 SV=1
Length = 271
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 77/169 (45%), Gaps = 19/169 (11%)
Query: 65 HSEEEVKIWPHRYEF----RLRITLGPGGDL-MLTSRIRNTNTDGKSFAFTF-------- 111
H +++W + + ++R+ DL ++ +++ TD FT
Sbjct: 89 HGTARIRLWQLSHYYISVHKVRLEFELFSDLNIIEAKVSMVFTDKCHLTFTHYGEESAQA 148
Query: 112 AYHTYFAVSDISEVRVEGLETLDYLDNLKDKERFTEQGDAITFESEVDKVYLSTPTKIAI 171
A HTYF + DI++V V+GL + ++L ++ I+ VD +Y + + I
Sbjct: 149 ALHTYFNIGDINQVEVQGLPETCF-NSLNQQQENVPSPRHIS--ENVDCIYSAENMQNQI 205
Query: 172 LDHERKRTFVLRKDGLPDAVVWNPWDKKAKAMADFGDDEYKHMLCVEAA 220
LD RT L V+WNPW KK M++ G Y+ MLC+E A
Sbjct: 206 LDKSFNRTIALHHHNASQFVLWNPWHKKTSGMSETG---YQKMLCLETA 251
>sp|A2SQF6|DPHB_METLZ Diphthine synthase OS=Methanocorpusculum labreanum (strain ATCC
43576 / DSM 4855 / Z) GN=dphB PE=3 SV=1
Length = 252
Score = 36.2 bits (82), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 54/124 (43%), Gaps = 18/124 (14%)
Query: 104 GKSFAFTFAYHTYFAVSDISEVRV---EGLETLDYLDNLKDKERFTEQGDAI-TFESEVD 159
GKS + F Y +F ++ I + E L TL +LD KDKER+ + +A+ E +
Sbjct: 130 GKSVSVPFPYGKWFPMTPIEVISANLKENLHTLVFLDIQKDKERYMKISEAVDLLEEQAR 189
Query: 160 KVYLSTPTKIAILDHERKRTFVLRKDGLPDAVVWNPWDKKAKAMADFGDDEYKHMLCVEA 219
+V P + I + G P+ V ++ KA DFG H+L V A
Sbjct: 190 RVDAGIPLYVGI-----------ARAGSPEPTVHAGNAEEMKAF-DFGSP--LHILIVPA 235
Query: 220 ACVE 223
E
Sbjct: 236 TLHE 239
>sp|A5PF48|MYO1C_DANRE Unconventional myosin-Ic OS=Danio rerio GN=myo1c PE=3 SV=1
Length = 1026
Score = 32.0 bits (71), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 4/88 (4%)
Query: 166 PTKIAILDHERKRTFVLRKDGLPDAVVWNPWDKKAKAMADFGDDEYKHMLCVEAACVEKP 225
P LDH R + K LP +V+ W K ++ + E+ H +C+ +
Sbjct: 767 PDNEYFLDHVRFSFLMKVKRNLPKSVLDKSWPKPPPSLTE--ASEHIHRICIRNLVNDYC 824
Query: 226 IILKPGEEWRGRQEISAVPSSYCSGQLD 253
++P EWR + E V S GQ D
Sbjct: 825 RRIQP--EWRKQLEQKVVASGIFKGQKD 850
>sp|Q6FM92|EIF3B_CANGA Eukaryotic translation initiation factor 3 subunit B OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=PRT1 PE=3 SV=1
Length = 719
Score = 31.2 bits (69), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 135 YLDNLKDKERFTEQGDAITFESEVDKVYLSTPTKIAILDHERKRTFVLRKDGLPDAVVWN 194
+L +++D E+ +EQG E E+ ++ K + D + + FV++KD L + WN
Sbjct: 113 FLYSMRDVEKLSEQGAGEFVEPELPGFVPTSTLKSWLADEDGRDQFVIQKDNL-TGIFWN 171
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 104,729,969
Number of Sequences: 539616
Number of extensions: 4359606
Number of successful extensions: 9387
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 9372
Number of HSP's gapped (non-prelim): 10
length of query: 261
length of database: 191,569,459
effective HSP length: 115
effective length of query: 146
effective length of database: 129,513,619
effective search space: 18908988374
effective search space used: 18908988374
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)