Query 024857
Match_columns 261
No_of_seqs 199 out of 1131
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 07:55:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024857.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024857hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1594 Uncharacterized enzyme 100.0 1.7E-62 3.6E-67 408.7 24.4 246 1-251 59-305 (305)
2 cd09020 D-hex-6-P-epi_like D-h 100.0 2.2E-56 4.9E-61 390.2 25.4 231 2-241 35-269 (269)
3 COG0676 Uncharacterized enzyme 100.0 1.4E-46 3E-51 318.6 18.1 223 1-243 59-285 (287)
4 cd09025 Aldose_epim_Slr1438 Al 100.0 2.6E-42 5.7E-47 302.0 20.6 209 4-240 41-270 (271)
5 cd09021 Aldose_epim_Ec_YphB al 100.0 1.5E-36 3.3E-41 265.8 20.2 200 11-241 35-273 (273)
6 cd09024 Aldose_epim_lacX Aldos 100.0 4.8E-36 1E-40 264.6 22.8 206 12-242 40-288 (288)
7 cd01081 Aldose_epim aldose 1-e 100.0 1.3E-32 2.8E-37 241.1 21.0 205 9-238 35-283 (284)
8 PRK15172 putative aldose-1-epi 100.0 1.2E-31 2.6E-36 237.7 22.9 202 14-243 54-298 (300)
9 cd09022 Aldose_epim_Ec_YihR Al 100.0 1.7E-31 3.6E-36 235.3 21.0 201 15-240 36-284 (284)
10 PF01263 Aldose_epim: Aldose 1 100.0 3E-31 6.4E-36 234.7 14.2 213 15-241 70-300 (300)
11 cd09019 galactose_mutarotase_l 100.0 5.6E-28 1.2E-32 216.8 20.8 194 32-242 92-326 (326)
12 COG2017 GalM Galactose mutarot 100.0 9.4E-28 2E-32 213.3 20.7 205 14-244 60-307 (308)
13 PLN00194 aldose 1-epimerase; P 99.9 7.4E-26 1.6E-30 203.6 22.6 225 5-243 53-336 (337)
14 TIGR02636 galM_Leloir galactos 99.9 6.1E-25 1.3E-29 197.6 21.1 219 4-243 47-335 (335)
15 PRK11055 galM galactose-1-epim 99.9 2.5E-23 5.4E-28 187.2 22.6 219 4-243 53-340 (342)
16 PTZ00485 aldolase 1-epimerase; 99.9 5.7E-21 1.2E-25 173.0 21.9 230 4-251 58-375 (376)
17 cd09023 Aldose_epim_Ec_c4013 A 99.8 5.2E-19 1.1E-23 155.8 14.9 189 28-238 70-283 (284)
18 KOG1604 Predicted mutarotase [ 99.6 2.3E-14 5E-19 124.8 18.4 194 30-245 112-352 (353)
19 cd09269 deoxyribose_mutarotase 99.2 2E-10 4.4E-15 101.3 14.3 193 28-240 61-292 (293)
20 PF14486 DUF4432: Domain of un 98.9 2.6E-08 5.6E-13 88.5 13.4 192 29-242 86-302 (302)
21 PF09095 DUF1926: Domain of un 86.8 9.6 0.00021 33.5 10.6 133 73-240 144-278 (278)
22 COG0832 UreB Urea amidohydrola 74.2 4.8 0.0001 29.5 3.5 41 82-128 12-52 (106)
23 cd00407 Urease_beta Urease bet 73.3 4.9 0.00011 29.6 3.4 31 83-118 13-43 (101)
24 TIGR00192 urease_beta urease, 73.1 5.3 0.00012 29.4 3.5 40 83-128 13-52 (101)
25 PF00699 Urease_beta: Urease b 72.9 4.7 0.0001 29.6 3.2 40 83-128 12-51 (100)
26 PRK13203 ureB urease subunit b 71.7 5.6 0.00012 29.3 3.3 31 83-118 13-43 (102)
27 PRK13202 ureB urease subunit b 67.8 8 0.00017 28.6 3.5 40 83-128 13-53 (104)
28 PRK13205 ureB urease subunit b 66.3 7.9 0.00017 30.6 3.4 40 83-128 13-52 (162)
29 PRK13201 ureB urease subunit b 66.0 8.3 0.00018 29.8 3.4 31 83-118 13-43 (136)
30 PRK13204 ureB urease subunit b 63.8 9.4 0.0002 30.3 3.4 42 72-118 24-66 (159)
31 PRK13198 ureB urease subunit b 62.4 10 0.00022 30.0 3.4 42 72-118 29-71 (158)
32 PF14315 DUF4380: Domain of un 57.3 1.3E+02 0.0028 26.2 17.4 33 76-110 110-143 (274)
33 PF05506 DUF756: Domain of unk 54.9 44 0.00096 23.6 5.5 38 74-116 6-43 (89)
34 PRK13192 bifunctional urease s 50.0 19 0.00041 30.0 3.2 43 71-118 109-152 (208)
35 PRK13986 urease subunit alpha; 48.0 20 0.00044 30.2 3.1 42 72-118 106-148 (225)
36 TIGR03593 yidC_nterm membrane 44.9 1.3E+02 0.0027 27.3 8.2 60 36-108 143-203 (366)
37 COG2835 Uncharacterized conser 38.4 13 0.00028 24.7 0.4 13 10-22 36-48 (60)
38 PF12690 BsuPI: Intracellular 37.3 51 0.0011 23.2 3.4 19 90-110 1-19 (82)
39 PF04744 Monooxygenase_B: Mono 36.3 58 0.0012 29.8 4.3 28 80-110 255-282 (381)
40 PF14796 AP3B1_C: Clathrin-ada 34.9 1.1E+02 0.0024 24.2 5.2 20 226-245 124-143 (145)
41 PRK05089 cytochrome C oxidase 32.2 2.9E+02 0.0064 22.8 7.6 52 56-111 62-114 (188)
42 cd06535 CIDE_N_CAD CIDE_N doma 30.9 16 0.00035 25.6 -0.0 22 213-236 56-77 (77)
43 TIGR03079 CH4_NH3mon_ox_B meth 30.8 69 0.0015 29.3 3.9 27 81-110 275-301 (399)
44 PF00942 CBM_3: Cellulose bind 30.6 1.3E+02 0.0028 21.1 4.7 33 89-123 13-46 (86)
45 PF06030 DUF916: Bacterial pro 29.4 2.1E+02 0.0045 21.7 5.9 34 84-119 22-55 (121)
46 PF10633 NPCBM_assoc: NPCBM-as 28.7 60 0.0013 22.2 2.6 17 227-243 45-61 (78)
47 PF00207 A2M: Alpha-2-macroglo 28.4 1.6E+02 0.0035 20.7 5.0 36 74-111 55-90 (92)
48 PF14849 YidC_periplas: YidC p 28.2 2.9E+02 0.0063 23.5 7.4 63 36-109 68-131 (270)
49 PF14100 PmoA: Methane oxygena 27.1 91 0.002 27.2 4.0 38 213-255 224-262 (271)
50 PF14310 Fn3-like: Fibronectin 25.1 96 0.0021 20.8 3.1 21 225-245 26-46 (71)
51 cd06536 CIDE_N_ICAD CIDE_N dom 23.9 28 0.00062 24.6 0.2 21 213-235 59-79 (80)
52 cd01615 CIDE_N CIDE_N domain, 23.3 32 0.00069 24.2 0.3 21 213-235 57-77 (78)
53 PRK11827 hypothetical protein; 23.0 32 0.00069 22.9 0.3 13 10-22 36-48 (60)
54 KOG3150 Uncharacterized conser 21.5 53 0.0011 26.3 1.3 19 177-195 16-34 (182)
No 1
>KOG1594 consensus Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.7e-62 Score=408.67 Aligned_cols=246 Identities=67% Similarity=1.154 Sum_probs=231.0
Q ss_pred CCccccCCC-CCCCCcceEEcccccCCCCCCCceeeecCCcEEecCCCCCCCCCCCceEEEEEecCChhhhccCCcceEE
Q 024857 1 MGKNCFFLV-ARPLLRIQSQFVEFANHGSLEKHGFARSRVWSIDPDPPPFSANSSSQACVDLILKHSEEEVKIWPHRYEF 79 (261)
Q Consensus 1 ~~~~~~~~~-~~~rgG~PvlFP~fg~~~~~~~HGfar~~~W~v~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l 79 (261)
||.-+.|++ .+||||||+|||+||..+.+++|||||++.|+++....+++ +-+.+.|.|.|.+++++++.|||.|++
T Consensus 59 ~S~kA~f~ppKpIRGGIP~~FPQFG~~g~l~qHGFaRn~~W~v~~~p~~lp--~~~~a~Vdl~Lk~~~~~~kiWp~~Fe~ 136 (305)
T KOG1594|consen 59 VSTKAIFKPPKPIRGGIPICFPQFGNFGSLPQHGFARNRFWEVENNPPPLP--SLGKATVDLILKSSEDDLKIWPHSFEL 136 (305)
T ss_pred echhhhcCCCCcccCCcceEeeccCCCCcccccccccceeeEeccCCCCCC--cCCceeEEEEecCChhhhhhCCcceEE
Confidence 566788888 78999999999999999999999999999999998865554 224588999999999999999999999
Q ss_pred EEEEEEcCCCeEEEEEEEEecCCCCeeEEEeeeeceeeecCCcceeEEecCCCCceeeCCCCcceeeeeCCeeeecCCCC
Q 024857 80 RLRITLGPGGDLMLTSRIRNTNTDGKSFAFTFAYHTYFAVSDISEVRVEGLETLDYLDNLKDKERFTEQGDAITFESEVD 159 (261)
Q Consensus 80 ~~ty~L~~~~~L~i~~~v~N~n~~~~~~pf~~g~HpYF~v~~~~~l~~~gl~~~~~~d~l~~~~~~~~~~~~~~l~~~~D 159 (261)
++++.|.+ +.|+++.+|+|+ +++|+.|++++|+||+++|+.+++++||++.+|+|++....++.++.+.++|++++|
T Consensus 137 ~lrv~l~~-g~Lt~~~rV~Nt--d~KpFsF~~alHtYf~vsdisevrveGL~tldylD~~~~~~~~tE~~davTF~~e~D 213 (305)
T KOG1594|consen 137 RLRVSLGD-GELTLTSRVRNT--DSKPFSFSFALHTYFRVSDISEVRVEGLETLDYLDNLKNRERFTEQRDAVTFNSEVD 213 (305)
T ss_pred EEEEEEcC-CceEEEEEeecC--CCCceEEEeEeeeeEeecccceEEEeccccccccccccchhhccccCceEeecccee
Confidence 99999996 899999999999 999999999999999999999999999999999998877777888889999999999
Q ss_pred eEEeCCCCeEEEEeCCCCcEEEEEECCCCcEEEeCCcccccccccCCCCCCccceEEeccCccCCCEEeCCCCEEEEEEE
Q 024857 160 KVYLSTPTKIAILDHERKRTFVLRKDGLPDAVVWNPWDKKAKAMADFGDDEYKHMLCVEAACVEKPIILKPGEEWRGRQE 239 (261)
Q Consensus 160 ~vy~~~~~~~~l~d~~~~~~i~i~~~~~~~~vvw~p~~~~~~~~~d~~~~~~~~~vCvEp~~~~~~~~L~PGe~~~~~~~ 239 (261)
++|++.+.++.|.|-.++++|.|...|+|+.||||||.+++++|+||++++|+.|+|||++.++.+++|+||++|++.+.
T Consensus 214 rvYl~tp~e~aI~dh~~krti~l~k~g~pDaVVWNPW~kksk~maD~gde~Y~~mlCVe~a~v~~pI~L~PG~eW~g~q~ 293 (305)
T KOG1594|consen 214 RVYLNTPTELAIFDHEKKRTIVLKKEGLPDAVVWNPWDKKSKTMADFGDEDYKHMLCVESAAVESPITLKPGEEWKGRQL 293 (305)
T ss_pred eEEecCCceEEEEEeccccEEEEeccCCCceEEeChhHhhhhhhhhccccccceeEEecccccCCceeecCCccceeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecCCCCCC
Q 024857 240 ISAVPSSYCSGQ 251 (261)
Q Consensus 240 i~~~~~~~~~~~ 251 (261)
+.+..++|||||
T Consensus 294 Lsiv~s~~~s~q 305 (305)
T KOG1594|consen 294 LSIVPSSYCSGQ 305 (305)
T ss_pred EEEeecccccCC
Confidence 999999999997
No 2
>cd09020 D-hex-6-P-epi_like D-hexose-6-phosphate epimerase-like. D-Hexose-6-phosphate epimerase Ymr099c from Saccharomyces cerevisiae belongs to the large superfamily of aldose-1-epimerases. Its active site is very similar to the catalytic site of galactose mutarotase, the best studied member of the superfamily. It also contains the conserved glutamate and histidine residues that have been shown in galactose mutarotase to be critical for catalysis, the glutamate serving as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen. In addition Ymr099c contains 2 conserved arginine residues which are involved in phosphate binding, and exhibits hexose-6-phosphate mutarotase activity on glucose-6-P, galactose-6-P and mannose-6-P.
Probab=100.00 E-value=2.2e-56 Score=390.25 Aligned_cols=231 Identities=46% Similarity=0.731 Sum_probs=206.8
Q ss_pred CccccCCC-CCCCCcceEEcccccCCC---CCCCceeeecCCcEEecCCCCCCCCCCCceEEEEEecCChhhhccCCcce
Q 024857 2 GKNCFFLV-ARPLLRIQSQFVEFANHG---SLEKHGFARSRVWSIDPDPPPFSANSSSQACVDLILKHSEEEVKIWPHRY 77 (261)
Q Consensus 2 ~~~~~~~~-~~~rgG~PvlFP~fg~~~---~~~~HGfar~~~W~v~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f 77 (261)
++.+.|+. .+||||+||||||||+.. .+++|||||++.|+|.+.. .+++..+++|.+.+++++++.|||+|
T Consensus 35 s~~~~~~~~~~irgGiPvlfP~~g~~~~~~~~~~HGfaR~~~W~l~~~~-----~~~~~~~l~l~l~~~~~~~~~~P~~f 109 (269)
T cd09020 35 SPQAPFDGGKAIRGGIPVCWPWFGPHGPNADLPAHGFARTRLWELLEVS-----EDEDGVTVSLELDDTDETRAIWPHAF 109 (269)
T ss_pred CCccccCCCCcccCCCeEeeeccCCCCCCCCCCcceeeecCceEEeeee-----cCCCceEEEEEeCCChhhhhcCCCce
Confidence 56778885 678999999999999986 6899999999999998763 22345788899988888889999999
Q ss_pred EEEEEEEEcCCCeEEEEEEEEecCCCCeeEEEeeeeceeeecCCcceeEEecCCCCceeeCCCCcceeeeeCCeeeecCC
Q 024857 78 EFRLRITLGPGGDLMLTSRIRNTNTDGKSFAFTFAYHTYFAVSDISEVRVEGLETLDYLDNLKDKERFTEQGDAITFESE 157 (261)
Q Consensus 78 ~l~~ty~L~~~~~L~i~~~v~N~n~~~~~~pf~~g~HpYF~v~~~~~l~~~gl~~~~~~d~l~~~~~~~~~~~~~~l~~~ 157 (261)
+++++|+|.+ ++|+++++|+|+ |+++|||++|+||||+++++.+++|.|+++..|+|++..... ....+.+.+.++
T Consensus 110 ~l~~~~~L~~-~~L~~~l~v~N~--g~~~~p~~~g~HpYf~v~d~~~~~v~gl~~~~y~d~~~~~~~-~~~~~~~~~~~~ 185 (269)
T cd09020 110 ELRLTVTLGF-DTLELELTVTNT--GDKPFSFTAALHTYFRVSDIEQVRVEGLEGATYLDKLTDQRE-KVQGGAVTFDGE 185 (269)
T ss_pred EEEEEEEEcC-CcEEEEEEEECC--CCCCeEehhccCeeEecCCccccEEeCCCCCceEEcCCCccc-cccCCceEECCc
Confidence 9999999997 899999999999 999999999999999999999999999999899998754322 223467888899
Q ss_pred CCeEEeCCCCeEEEEeCCCCcEEEEEECCCCcEEEeCCcccccccccCCCCCCccceEEeccCccCCCEEeCCCCEEEEE
Q 024857 158 VDKVYLSTPTKIAILDHERKRTFVLRKDGLPDAVVWNPWDKKAKAMADFGDDEYKHMLCVEAACVEKPIILKPGEEWRGR 237 (261)
Q Consensus 158 ~D~vy~~~~~~~~l~d~~~~~~i~i~~~~~~~~vvw~p~~~~~~~~~d~~~~~~~~~vCvEp~~~~~~~~L~PGe~~~~~ 237 (261)
+|++|.+.+..+.|.|+..+++|+|+.++++++||||||.+++++|+||++++|++||||||++..++++|+|||+|+++
T Consensus 186 ~Drvy~~~~~~~~i~d~~~~~~i~i~~~~~~~~VVWNP~~~~~~~~~d~~~~~~~~fvCvEp~~~~~~~~L~pG~~~~~~ 265 (269)
T cd09020 186 VDRVYLNTPAPLTIDDPAWGRRIRIEKSGSPSAVVWNPWIEKAARMADFPDDGYRRMVCVEAANVADPVTLAPGESHTLS 265 (269)
T ss_pred cceEEeCCCCCEEEEcCCCCcEEEEEecCCCCEEEeCcchhhccccccCCccccceEEEECeeecCCCEEECCCCCEEEE
Confidence 99999988888999999889999999999999999999999999999999999999999999998889999999999999
Q ss_pred EEEE
Q 024857 238 QEIS 241 (261)
Q Consensus 238 ~~i~ 241 (261)
++|+
T Consensus 266 ~~i~ 269 (269)
T cd09020 266 QTIS 269 (269)
T ss_pred EEEC
Confidence 9884
No 3
>COG0676 Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.4e-46 Score=318.57 Aligned_cols=223 Identities=33% Similarity=0.479 Sum_probs=186.3
Q ss_pred CCccccCCC-CCCCCcceEEcccccCCCC--CCCceeeecCCcEEecCCCCCCCCCCCceEEEEEecCChhhhccCCcce
Q 024857 1 MGKNCFFLV-ARPLLRIQSQFVEFANHGS--LEKHGFARSRVWSIDPDPPPFSANSSSQACVDLILKHSEEEVKIWPHRY 77 (261)
Q Consensus 1 ~~~~~~~~~-~~~rgG~PvlFP~fg~~~~--~~~HGfar~~~W~v~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f 77 (261)
+|.++-|+. .+|||||||||||||+... +|.|||||+++|++.+.. .+++...++|.|..+++ |+.|
T Consensus 59 LS~~~p~~~g~aIRGGIPICwPWFG~~~~~~~PaHG~AR~~~W~l~~~~-----~~~~~v~v~f~L~~~~~-----p~~~ 128 (287)
T COG0676 59 LSSNAPFKGGAAIRGGIPICWPWFGPLAQQGLPAHGFARNRPWKLLEHD-----EDEDGVRVTFGLDLEDE-----PHDF 128 (287)
T ss_pred ecccCccCCCCcccCCCcEEEeccCccCCCCCCccchhhcCceeeeehh-----cccCceEEEEEeCCCcc-----ccce
Confidence 477888996 7789999999999999874 799999999999999884 45567788898876543 9999
Q ss_pred EEEEEEEEcCCCeEEEEEEEEecCCCCeeEEEeeeeceeeecCCcceeEEecCCCCceeeCCCCcceeeeeCCeeeecCC
Q 024857 78 EFRLRITLGPGGDLMLTSRIRNTNTDGKSFAFTFAYHTYFAVSDISEVRVEGLETLDYLDNLKDKERFTEQGDAITFESE 157 (261)
Q Consensus 78 ~l~~ty~L~~~~~L~i~~~v~N~n~~~~~~pf~~g~HpYF~v~~~~~l~~~gl~~~~~~d~l~~~~~~~~~~~~~~l~~~ 157 (261)
.++++++|++ .|+++++..|. ++ |+.++||||+|+|+.++.+.||++..+.+.+ .........+...++++
T Consensus 129 ~lr~~~~~g~--~le~~l~~~~~--~s----~~~AlHtYF~VgDi~qv~V~GL~~~~~~~~~-~~~~~v~~~g~~~~~~~ 199 (287)
T COG0676 129 TLRLTFRFGE--TLELELESYGE--ES----FQAALHTYFRVGDIEQVEVSGLGGVCIDKVL-NAEEEVTQHGIVTFPGE 199 (287)
T ss_pred EEEEEeeccc--eEEEEEEecCh--hH----HHHhhcceEEecchhheEeccCCceehhhhh-hceeeccCCCceeeCCC
Confidence 9999999984 68888888876 44 9999999999999999999999875444433 22222223455889999
Q ss_pred CCeEEeCCCCeEEEEeCCCCcEEEEEECCCCcEEEeCCcccccccccCCCCCCccceEEeccCccCC-CEEeCCCCEEEE
Q 024857 158 VDKVYLSTPTKIAILDHERKRTFVLRKDGLPDAVVWNPWDKKAKAMADFGDDEYKHMLCVEAACVEK-PIILKPGEEWRG 236 (261)
Q Consensus 158 ~D~vy~~~~~~~~l~d~~~~~~i~i~~~~~~~~vvw~p~~~~~~~~~d~~~~~~~~~vCvEp~~~~~-~~~L~PGe~~~~ 236 (261)
.|++|++......|.|+..+|+|+|+..+...+||||||.+++.+|+||++++|+.||||||+.... ...++|+ ..+.
T Consensus 200 ~DriY~~~~~~~~I~D~~~~R~I~l~~~~~~~~VvWNP~~~~s~~M~d~~d~gyq~mlCvEta~~~~~l~~~~~~-~~~l 278 (287)
T COG0676 200 TDRIYLNPEPCSVIVDPALNRIITLEHQGHSSTVVWNPGHAKSSSMADMPDDGYQTMLCVETARVGPDLKVGEPG-PVRL 278 (287)
T ss_pred ccEEEEcCCCceEEecCcceEEEEEEecCCCCeEEECCCccccccccccccccceEEEEEeecccCcchhhcCCc-ceee
Confidence 9999999888899999988999999999999999999999999999999999999999999998754 4566666 7776
Q ss_pred EEEEEEe
Q 024857 237 RQEISAV 243 (261)
Q Consensus 237 ~~~i~~~ 243 (261)
.++|++.
T Consensus 279 ~~~i~~~ 285 (287)
T COG0676 279 ALKISVA 285 (287)
T ss_pred eeeeecc
Confidence 6666653
No 4
>cd09025 Aldose_epim_Slr1438 Aldose 1-epimerase, similar to Synechocystis Slr1438. Proteins similar to Synechocystis Slr1438 are uncharacterized members of aldose-1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=100.00 E-value=2.6e-42 Score=302.00 Aligned_cols=209 Identities=26% Similarity=0.410 Sum_probs=170.9
Q ss_pred cccCCC-CCCCCcceEEcccccCCC-----------CCCCceeeecCCcEEecCCCCCCCCCCCceEEEEEecCChhhhc
Q 024857 4 NCFFLV-ARPLLRIQSQFVEFANHG-----------SLEKHGFARSRVWSIDPDPPPFSANSSSQACVDLILKHSEEEVK 71 (261)
Q Consensus 4 ~~~~~~-~~~rgG~PvlFP~fg~~~-----------~~~~HGfar~~~W~v~~~~~~~~~~~~~~~~v~l~l~~~~~~~~ 71 (261)
.+.+.. .++|||+|+|||||||.. .+++|||+|++.|++++.. +...++|++.+++++.+
T Consensus 41 ~~~~~~~~~~~gG~p~l~P~~gri~~g~~~~~g~~~~lp~HGf~r~~~W~v~~~~--------~~~~v~l~l~~~~~~~~ 112 (271)
T cd09025 41 ERFADPAKSVRGGIPILFPICGNLPDDGYPLAGQEYTLKQHGFARDLPWEVELLG--------DGAGLTLTLRDNEATRA 112 (271)
T ss_pred hHHhccccccCCCCcEEECccCCCCCCeEEECCEEEeccCcccccCCCEEEEecC--------CCcEEEEEEeCCHHHHh
Confidence 344444 567999999999999974 5789999999999998751 24678999988777788
Q ss_pred cCCcceEEEEEEEEcCCCeEEEEEEEEecCCCCeeEEEeeeeceeeecCCcceeEEecCCCCceeeCCCCcceeeeeCCe
Q 024857 72 IWPHRYEFRLRITLGPGGDLMLTSRIRNTNTDGKSFAFTFAYHTYFAVSDISEVRVEGLETLDYLDNLKDKERFTEQGDA 151 (261)
Q Consensus 72 ~~P~~f~l~~ty~L~~~~~L~i~~~v~N~n~~~~~~pf~~g~HpYF~v~~~~~l~~~gl~~~~~~d~l~~~~~~~~~~~~ 151 (261)
+|||+|+++++|+|.+ ++|+++++++|+ |+++|||++|+||||++++..++++.++. ..++++...+.... ..+.
T Consensus 113 ~~P~~~~~~~~y~L~~-~~L~i~~~v~N~--~~~~~p~~~g~HpYF~~~~~~~~~l~~~~-~~~~~~~~~~~~~~-~~~~ 187 (271)
T cd09025 113 VYPFDFELELTYRLAG-NTLEIAQRVHNL--GDQPMPFSFGFHPYFAVPDKAKLSLDLPP-TRCFDQKTDEEANT-PGQF 187 (271)
T ss_pred hCCceEEEEEEEEEeC-CEEEEEEEEEEC--CCCcEEEEEecCceeeCCchhccEEEcCH-HHHhhhccCCccCC-cccc
Confidence 9999999999999997 899999999999 99999999999999999988888888764 56776543321111 1223
Q ss_pred eeecCCCCeEEeCCCCeEEEEeCCCCcEEEEEEC-CCCcEEEeCCcccccccccCCCCCCccceEEeccCc--------c
Q 024857 152 ITFESEVDKVYLSTPTKIAILDHERKRTFVLRKD-GLPDAVVWNPWDKKAKAMADFGDDEYKHMLCVEAAC--------V 222 (261)
Q Consensus 152 ~~l~~~~D~vy~~~~~~~~l~d~~~~~~i~i~~~-~~~~~vvw~p~~~~~~~~~d~~~~~~~~~vCvEp~~--------~ 222 (261)
.....++|++|..+. .+.|.++..+++|+|..+ +++++|||||.. +.|||||||+ .
T Consensus 188 ~~~~~~~D~~y~~~~-~~~l~~~~~~~~i~l~~~~~~~~~vvw~p~~--------------~~~vCvEp~t~~~nA~n~~ 252 (271)
T cd09025 188 DETEEGVDLLFRPLG-PASLTDGARGLKITLDHDEPFSNLVVWTDKG--------------KDFVCLEPWTGPRNALNTG 252 (271)
T ss_pred cccccccchhhccCC-ceEEEecCCCEEEEEecCCCcceEEEecCCC--------------CcEEEEecCCCCccccCcC
Confidence 344568999999875 789999877899999987 589999999842 4799999985 2
Q ss_pred CCCEEeCCCCEEEEEEEE
Q 024857 223 EKPIILKPGEEWRGRQEI 240 (261)
Q Consensus 223 ~~~~~L~PGe~~~~~~~i 240 (261)
.++++|+|||+++++++|
T Consensus 253 ~~~~~L~PGe~~~~~~~i 270 (271)
T cd09025 253 ERLLLLPPGETEEASVRI 270 (271)
T ss_pred CccEEECCCCEEEEEEEE
Confidence 467999999999999887
No 5
>cd09021 Aldose_epim_Ec_YphB aldose 1-epimerase, similar to Escherichia coli YphB. Proteins similar to Escherichia coli YphB are uncharacterized members of the aldose-1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=100.00 E-value=1.5e-36 Score=265.84 Aligned_cols=200 Identities=19% Similarity=0.287 Sum_probs=155.8
Q ss_pred CCCCcceEEcccccCCC-----------CC---------CCceeeecCCcEEecCCCCCCCCCCCceEEEEEecCChhhh
Q 024857 11 RPLLRIQSQFVEFANHG-----------SL---------EKHGFARSRVWSIDPDPPPFSANSSSQACVDLILKHSEEEV 70 (261)
Q Consensus 11 ~~rgG~PvlFP~fg~~~-----------~~---------~~HGfar~~~W~v~~~~~~~~~~~~~~~~v~l~l~~~~~~~ 70 (261)
..++|+|+|||+.||+. .+ ++|||||++.|+|++.. +..++|++..++.+
T Consensus 35 ~~~~~~p~LfP~~gRi~~~~~~~~g~~y~l~~n~~~~~~~~HG~ar~~~w~v~~~~---------~~~v~l~l~~~~~~- 104 (273)
T cd09021 35 ALAMACFPLVPFSNRIRGGRFLFAGREVALPPNTADEPHPLHGDGWRRPWQVVAAS---------ADSAELQLDHEADD- 104 (273)
T ss_pred cccccCceEeccCCcccCCcEeECCEEEecCCCCCCCccCcccchhcCceEEEecc---------CCeEEEEEecCCCC-
Confidence 44889999999999974 22 79999999999998762 34677777765432
Q ss_pred ccCCcceEEEEEEEEcCCCeEEEEEEEEecCCCCeeEEEeeeeceeeecCCcceeEEecCCCCcee---eCCCCcceeee
Q 024857 71 KIWPHRYEFRLRITLGPGGDLMLTSRIRNTNTDGKSFAFTFAYHTYFAVSDISEVRVEGLETLDYL---DNLKDKERFTE 147 (261)
Q Consensus 71 ~~~P~~f~l~~ty~L~~~~~L~i~~~v~N~n~~~~~~pf~~g~HpYF~v~~~~~l~~~gl~~~~~~---d~l~~~~~~~~ 147 (261)
+||+|+++++|+|.+ ++|+++++++|+ ++++|||++|+||||++++...+++.+.. .+. +.++++.....
T Consensus 105 --~P~~~~~~~~y~L~~-~~L~i~~~~~N~--~~~~~~~~~g~H~YF~~~~~~~l~v~~~~--~~~~d~~~lp~~~~~~~ 177 (273)
T cd09021 105 --PPWAYRAEQRFHLAG-DGLSITLSVTNR--GDRPMPAGLGFHPYFPRTPDTRLQADADG--VWLEDEDHLPTGLRPHP 177 (273)
T ss_pred --CCEeEEEEEEEEEcC-CCEEEEEEEEEC--CCCCceeeeecCccEecCCCCEEEEecce--EEecCCCcCCCcccCCC
Confidence 499999999999987 899999999999 99999999999999999987778887531 222 44554322110
Q ss_pred e----CCeeee-cCCCCeEEeCCCCeEEEEeCCCCcEEEEEECC-CCcEEEeCCcccccccccCCCCCCccceEEeccCc
Q 024857 148 Q----GDAITF-ESEVDKVYLSTPTKIAILDHERKRTFVLRKDG-LPDAVVWNPWDKKAKAMADFGDDEYKHMLCVEAAC 221 (261)
Q Consensus 148 ~----~~~~~l-~~~~D~vy~~~~~~~~l~d~~~~~~i~i~~~~-~~~~vvw~p~~~~~~~~~d~~~~~~~~~vCvEp~~ 221 (261)
. .....+ ...+|++|......+.+.++.++++|+|.+++ ++++|||||+. ++|||||||+
T Consensus 178 ~~~df~~~~~l~~~~~D~~f~~~~~~~~l~~~~~~~~i~v~~~~~~~~~vvwtp~~--------------~~~vCvEP~~ 243 (273)
T cd09021 178 PDWDFSQPRPLPDRWIDNCFTGWDGAALIWPPERGLALTIEADAPFSHLVVYRPPG--------------EDFFCLEPVS 243 (273)
T ss_pred cchhhcCCCcCCcccccccccCCCcceEEecCCCCcEEEEecCCCCCEEEEEcCCC--------------CCeEEEcccc
Confidence 0 111122 23799999876566888888888999999997 99999999962 4799999996
Q ss_pred c----------CCCEEeCCCCEEEEEEEEE
Q 024857 222 V----------EKPIILKPGEEWRGRQEIS 241 (261)
Q Consensus 222 ~----------~~~~~L~PGe~~~~~~~i~ 241 (261)
. .+.++|+|||+++.+++|+
T Consensus 244 ~~~da~~~~~~~~~~~L~pge~~~~~~~i~ 273 (273)
T cd09021 244 HAPDAHHGPGDPGLRVLAPGESLSLSMRIT 273 (273)
T ss_pred CCCCccCCcCCCCcEEeCCCCcEEEEEEEC
Confidence 2 2358999999999998874
No 6
>cd09024 Aldose_epim_lacX Aldose 1-epimerase, similar to Lactococcus lactis lacX. Proteins similar to Lactococcus lactis lacX are uncharacterized members of aldose-1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=100.00 E-value=4.8e-36 Score=264.65 Aligned_cols=206 Identities=19% Similarity=0.323 Sum_probs=155.1
Q ss_pred CCCcceEEcccccCCC-----------CCCCceeeecCCcEEecCCCCCCCCCCCceEEEEEecCChhhhccCCcceEEE
Q 024857 12 PLLRIQSQFVEFANHG-----------SLEKHGFARSRVWSIDPDPPPFSANSSSQACVDLILKHSEEEVKIWPHRYEFR 80 (261)
Q Consensus 12 ~rgG~PvlFP~fg~~~-----------~~~~HGfar~~~W~v~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~ 80 (261)
..+++|+||||+||.. ++++|||+|++.|+|.+.. ..+++|++.+++++..+|||+|+++
T Consensus 40 ~~~~~p~l~P~~gri~~g~~~~~g~~~~l~~HGf~r~~~w~v~~~~---------~~~v~l~l~~~~~~~~~~P~~~~~~ 110 (288)
T cd09024 40 WGRHAPILFPIVGRLKDDTYTIDGKTYPMPQHGFARDMEFEVVEQS---------DDSVTFELTDNEETLKVYPFDFELR 110 (288)
T ss_pred cCCCCCEEEeeccCCCCCeEEECCEEeeccCCCCcccCceEEEEcc---------CCEEEEEEccCcchhhcCCeEEEEE
Confidence 4678999999999975 5789999999999998762 3578999988777778999999999
Q ss_pred EEEEEcCCCeEEEEEEEEecCCCCeeEEEeeeeceeeecCCcc-----e--eEEecCCCCcee--e--C-CCCcce-eee
Q 024857 81 LRITLGPGGDLMLTSRIRNTNTDGKSFAFTFAYHTYFAVSDIS-----E--VRVEGLETLDYL--D--N-LKDKER-FTE 147 (261)
Q Consensus 81 ~ty~L~~~~~L~i~~~v~N~n~~~~~~pf~~g~HpYF~v~~~~-----~--l~~~gl~~~~~~--d--~-l~~~~~-~~~ 147 (261)
++|+|.+ ++|+++++++|+ ++++|||++|+||||++++.. + +++...+...++ + . ++.+.. ...
T Consensus 111 ~~y~L~~-~~L~i~~~v~N~--~~~~~p~~~g~HpYF~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (288)
T cd09024 111 VTYTLEG-NTLKVTYEVKNP--DDKTMPFSIGGHPAFNCPLDEGEKFEDYYLEFEPKEELERIPLVGPLGLLGEKKPLLL 187 (288)
T ss_pred EEEEEeC-CEEEEEEEEEcC--CCCceEEEEeCCceEECCCCCCCcccceEEEECCcccceEEecCCccccccccccccC
Confidence 9999997 899999999999 999999999999999998532 3 555431111221 2 1 222211 111
Q ss_pred eCCeeeecCC--CCeE--EeCCC-CeEEEEeCCCCcEEEEEECCCCcEEEeCCcccccccccCCCCCCccceEEeccCcc
Q 024857 148 QGDAITFESE--VDKV--YLSTP-TKIAILDHERKRTFVLRKDGLPDAVVWNPWDKKAKAMADFGDDEYKHMLCVEAACV 222 (261)
Q Consensus 148 ~~~~~~l~~~--~D~v--y~~~~-~~~~l~d~~~~~~i~i~~~~~~~~vvw~p~~~~~~~~~d~~~~~~~~~vCvEp~~~ 222 (261)
....+.+... .|++ |..+. +.+.|.++..++.|+|..+++++++||+|... ++|||||||+.
T Consensus 188 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~l~~~~~~~l~vwt~~~~-------------~~~iciEP~t~ 254 (288)
T cd09024 188 NEGTLPLTHDLFDDDALIFDNLKSREVTLKSKKTGHGVTVDFDDFPYLGIWSKPNG-------------APFVCIEPWYG 254 (288)
T ss_pred CCCeecCCHHHhcCCEEEEcCCCccEEEEEcCCCCCEEEEEeCCCCEEEEeCCCCC-------------CCEEEEcCCCC
Confidence 1223444332 2343 33433 67899988778899999988999999998521 37999999982
Q ss_pred --------------CCCEEeCCCCEEEEEEEEEE
Q 024857 223 --------------EKPIILKPGEEWRGRQEISA 242 (261)
Q Consensus 223 --------------~~~~~L~PGe~~~~~~~i~~ 242 (261)
.+.++|+|||+++.+++|++
T Consensus 255 ~~da~~~~~~~~~~~gl~~L~PGe~~~~~~~i~~ 288 (288)
T cd09024 255 LADSVGFDGDLEDKEGINKLEPGESFEASYSITI 288 (288)
T ss_pred CCCcCCCCccccccCCCEEeCCCCEEEEEEEEEC
Confidence 26699999999999999874
No 7
>cd01081 Aldose_epim aldose 1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism; they catalyze the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=100.00 E-value=1.3e-32 Score=241.06 Aligned_cols=205 Identities=19% Similarity=0.208 Sum_probs=154.0
Q ss_pred CCCCCCcceEEcccccCCC------------------CCCCceeeecCCcEEecCCCCCCCCCCCceEEEEEecCChhhh
Q 024857 9 VARPLLRIQSQFVEFANHG------------------SLEKHGFARSRVWSIDPDPPPFSANSSSQACVDLILKHSEEEV 70 (261)
Q Consensus 9 ~~~~rgG~PvlFP~fg~~~------------------~~~~HGfar~~~W~v~~~~~~~~~~~~~~~~v~l~l~~~~~~~ 70 (261)
..++++|.|+||||+||+. .+++|||+|+++|+++... .+..+|+|++...+.+.
T Consensus 35 ~~~~~~~~~~l~P~~gri~~g~~~~~g~~~~~~~~~~~~~lHG~~~~~~w~v~~~~-------~~~~~v~l~~~~~~~~~ 107 (284)
T cd01081 35 LAPTGGGGAILFPFANRISDGRYTFDGKQYPLNEDEGGNAIHGFVRNLPWRVVATD-------EEEASVTLSYDLNDGPG 107 (284)
T ss_pred ccCCCCcceEecCcCCcccCCEEeECCEEecCCCCCCCccccCCeecCcEEEEEec-------cCCcEEEEEEEeCCCCC
Confidence 3467999999999999873 4689999999999998762 12467888887766554
Q ss_pred ccCCcceEEEEEEEEcCCCeEEEEEEEEecCCCCeeEEEeeeeceeeecCCc--ceeEEecCCCCcee--e--CCCCcce
Q 024857 71 KIWPHRYEFRLRITLGPGGDLMLTSRIRNTNTDGKSFAFTFAYHTYFAVSDI--SEVRVEGLETLDYL--D--NLKDKER 144 (261)
Q Consensus 71 ~~~P~~f~l~~ty~L~~~~~L~i~~~v~N~n~~~~~~pf~~g~HpYF~v~~~--~~l~~~gl~~~~~~--d--~l~~~~~ 144 (261)
+|||+|+++++|+|.+ ++|+|+++|+|+ ++++|||++|+||||+++.. .+.++.... ..++ + .++++..
T Consensus 108 -~~P~~~~l~~ty~L~~-~~L~i~~~v~N~--~~~~~p~~~g~HpyF~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~ 182 (284)
T cd01081 108 -GYPFPLELTVTYTLDA-DTLTITFTVTNL--GDEPMPFGLGWHPYFGLPGVAIEDLRLRVPA-SKVLPLDDLLPPTGEL 182 (284)
T ss_pred -CCCEEEEEEEEEEEeC-CeEEEEEEEEeC--CCCCcceeeecCceEecCCCcccceEEEecC-CEEEecCCccCCCCcc
Confidence 8999999999999998 899999999999 99999999999999999864 555555322 3343 2 1222211
Q ss_pred eee----eCCeeee-cCCCCeEEeCCC-----CeEEEEeCCCCcEEEEEECCCCcEEEeCCcccccccccCCCCCCccce
Q 024857 145 FTE----QGDAITF-ESEVDKVYLSTP-----TKIAILDHERKRTFVLRKDGLPDAVVWNPWDKKAKAMADFGDDEYKHM 214 (261)
Q Consensus 145 ~~~----~~~~~~l-~~~~D~vy~~~~-----~~~~l~d~~~~~~i~i~~~~~~~~vvw~p~~~~~~~~~d~~~~~~~~~ 214 (261)
... ......+ ...+|++|.... ..++|.++.+++.|++.++. +.+|||+|... .+.|
T Consensus 183 ~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~~v~t~~~~------------~~~~ 249 (284)
T cd01081 183 EVPGEEDFRLGRPLGGGELDDCFLLLGNDAGTAEARLEDPDSRISVEFETGW-PFWQVYTGDGG------------RRGS 249 (284)
T ss_pred CCcccccccCCcCcCCcccccccccCcCCCCeeEEEEECCCCeEEEEEeCCC-CEEEEECCCCC------------cCCE
Confidence 100 0111223 347899987543 37899998888899998875 99999998531 1479
Q ss_pred EEeccCcc---------CCCEEeC-CCCEEEEEE
Q 024857 215 LCVEAACV---------EKPIILK-PGEEWRGRQ 238 (261)
Q Consensus 215 vCvEp~~~---------~~~~~L~-PGe~~~~~~ 238 (261)
||||||+. .+.++|+ |||+++.++
T Consensus 250 ~ciEP~t~~~da~~~~~~~~~~L~~pge~~~~~~ 283 (284)
T cd01081 250 VAIEPMTSAPDAFFNNNGGLITLKPPGETRTFSI 283 (284)
T ss_pred EEEccccCCCCCCCCCCCceEEeCCCCceEEEEe
Confidence 99999984 1469999 999988764
No 8
>PRK15172 putative aldose-1-epimerase; Provisional
Probab=100.00 E-value=1.2e-31 Score=237.74 Aligned_cols=202 Identities=15% Similarity=0.156 Sum_probs=151.1
Q ss_pred CcceEEcccccCCC-----------CC---------CCceeeecCCcEEecCCCCCCCCCCCceEEEEEecCChhhhccC
Q 024857 14 LRIQSQFVEFANHG-----------SL---------EKHGFARSRVWSIDPDPPPFSANSSSQACVDLILKHSEEEVKIW 73 (261)
Q Consensus 14 gG~PvlFP~fg~~~-----------~~---------~~HGfar~~~W~v~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~ 73 (261)
.+.++||||.||+. ++ ++||+++.+.|+|.+.. +++++|++.+.+ ..+|
T Consensus 54 ~~g~~L~P~anRI~~g~f~~~G~~y~L~~N~~~~~~~lHG~~~~~~W~v~~~~---------~~~v~l~~~~~~--~~gy 122 (300)
T PRK15172 54 HLGKVLIPWPNRIANGCYRYQGQEYQLPINEHVSKAAIHGLLAWRDWQISELT---------ATSVTLTAFLPP--SYGY 122 (300)
T ss_pred ccccEecccCCeecCCEEEECCEEEECCCCCCCCCcccCCCccCceEEEEEec---------CCEEEEEEEcCC--CCCC
Confidence 44589999999974 22 39999999999997662 346777776643 3679
Q ss_pred CcceEEEEEEEEcCCCeEEEEEEEEecCCCCeeEEEeeeeceeeecCC--cceeEEecCCCCcee----eCCCCcceeee
Q 024857 74 PHRYEFRLRITLGPGGDLMLTSRIRNTNTDGKSFAFTFAYHTYFAVSD--ISEVRVEGLETLDYL----DNLKDKERFTE 147 (261)
Q Consensus 74 P~~f~l~~ty~L~~~~~L~i~~~v~N~n~~~~~~pf~~g~HpYF~v~~--~~~l~~~gl~~~~~~----d~l~~~~~~~~ 147 (261)
||+|+++++|+|.++++|+|+++++|+ ++++|||++|+||||+++. ..+.++.- +...++ +.++++.. ..
T Consensus 123 P~~~~~~v~y~L~~~~~L~i~~~~~n~--~~~~~P~~~g~HpYFnl~~~~~~~~~L~~-~a~~~~~~d~~~iPtg~~-~~ 198 (300)
T PRK15172 123 PFMLASQVIYSLDAATGLSVEIASQNI--GDVPAPYGVGIHPYLTCNLTSVDEYLLQL-PANQVLAVDEHANPTTLH-HV 198 (300)
T ss_pred CEEEEEEEEEEEccCCeEEEEEEEEEC--CCCceeeEEecCceEecCCCChhceEEEE-eCCeEEecCCCcCCCccc-cC
Confidence 999999999999854799999999999 9999999999999999973 44444432 223333 23454421 11
Q ss_pred eCCeeee------c-CCCCeEEeCCCC--eEEEEeCCCCcEEEEEECCCCcEEEeCCcccccccccCCCCCCccceEEec
Q 024857 148 QGDAITF------E-SEVDKVYLSTPT--KIAILDHERKRTFVLRKDGLPDAVVWNPWDKKAKAMADFGDDEYKHMLCVE 218 (261)
Q Consensus 148 ~~~~~~l------~-~~~D~vy~~~~~--~~~l~d~~~~~~i~i~~~~~~~~vvw~p~~~~~~~~~d~~~~~~~~~vCvE 218 (261)
.+..++| . .++|++|..+.. .++|.++.++++|++.++ .+++|||++... .+.+||||
T Consensus 199 ~~~~~df~~~~~l~~~~~D~~f~~~~~~~~~~l~~~~~g~~l~~~~~-~~~~~vyt~~~~------------~~~~~ciE 265 (300)
T PRK15172 199 DELDLDFSQAKKIAATKIDHTFKTANDLWEVRITHPQQALSVSLCSD-QPWLQIYSGEKL------------QRQGLAVE 265 (300)
T ss_pred CCCCcCCCCCeECCCCCccCEEEcCCCceEEEEEeCCCCeEEEEEcC-CCEEEEECCCCC------------CCCEEEEe
Confidence 1112222 2 269999987654 789999999999999986 789999998421 04799999
Q ss_pred cCccC--------CCEEeCCCCEEEEEEEEEEe
Q 024857 219 AACVE--------KPIILKPGEEWRGRQEISAV 243 (261)
Q Consensus 219 p~~~~--------~~~~L~PGe~~~~~~~i~~~ 243 (261)
||+.. +.++|+|||+++.+++|+..
T Consensus 266 p~t~p~dA~n~~~g~~~L~pge~~~~~~~i~~~ 298 (300)
T PRK15172 266 PMSCPPNAFNSGIDLLLLEPGKTHRLFFNIGGQ 298 (300)
T ss_pred CCCCCCCCCCCCCCCEEECCCCEEEEEEEEEEE
Confidence 99842 57999999999999998864
No 9
>cd09022 Aldose_epim_Ec_YihR Aldose 1-epimerase, similar to Escherichia coli YihR. Proteins similar to Escherichia coli YihR are uncharacterized members of aldose-1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=100.00 E-value=1.7e-31 Score=235.27 Aligned_cols=201 Identities=19% Similarity=0.242 Sum_probs=146.4
Q ss_pred cceEEcccccCCC-----------CCC---------CceeeecCCcEEecCCCCCCCCCCCceEEEEEecCChhhhccCC
Q 024857 15 RIQSQFVEFANHG-----------SLE---------KHGFARSRVWSIDPDPPPFSANSSSQACVDLILKHSEEEVKIWP 74 (261)
Q Consensus 15 G~PvlFP~fg~~~-----------~~~---------~HGfar~~~W~v~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P 74 (261)
..|+|||+.||+. +|+ +|||+|.+.|++++.. ..+++|++.+. ...+||
T Consensus 36 ~g~~l~p~~nRi~~g~~~~~G~~y~l~~N~~~~~~~~HG~~~~~~w~v~~~~---------~~~v~l~l~~~--~~~~yP 104 (284)
T cd09022 36 AGQVLAPWPNRIADGRYTFDGVEHQLPITEPERGNAIHGLVRWADWQLVEHT---------DSSVTLRTRIP--PQPGYP 104 (284)
T ss_pred cccEEeeeCCcccCCEEEECCEEEEccCcCCCCCCCCcCCeecceEEEeecc---------CCeEEEEEEeC--CccCCC
Confidence 3479999999974 344 9999999999998762 34678887763 357899
Q ss_pred cceEEEEEEEEcCCCeEEEEEEEEecCCCCeeEEEeeeeceeeecCCc--ceeEEecCCCCcee--e--CCCCcceeeee
Q 024857 75 HRYEFRLRITLGPGGDLMLTSRIRNTNTDGKSFAFTFAYHTYFAVSDI--SEVRVEGLETLDYL--D--NLKDKERFTEQ 148 (261)
Q Consensus 75 ~~f~l~~ty~L~~~~~L~i~~~v~N~n~~~~~~pf~~g~HpYF~v~~~--~~l~~~gl~~~~~~--d--~l~~~~~~~~~ 148 (261)
|+|+++++|+|.+ ++|+|+++++|+ ++++|||++|+||||++++. .+.++.- +...++ | .++++.... .
T Consensus 105 ~~~~~~~~y~L~~-~~L~i~~~v~N~--~~~~~p~~~g~HpyF~l~~~~~~~~~L~~-~a~~~~~~d~~~lptg~~~~-~ 179 (284)
T cd09022 105 FTLELTVTYELDD-DGLTVTLTATNV--GDEPAPFGVGFHPYLSAGGAPLDECTLTL-PADTWLPVDERLLPTGTEPV-A 179 (284)
T ss_pred ceEEEEEEEEEcC-CcEEEEEEEEeC--CCCCeEeeeEecceEecCCCCcccEEEEE-ECceEEecCCccCCCcCcCC-C
Confidence 9999999999998 789999999999 99999999999999999853 4544331 112232 2 244432211 1
Q ss_pred CCeeee------c-CCCCeEEeCCC------CeEEEEeCCCCcEEEEEEC-CCCcEEEeCCcccccccccCCCCCCccce
Q 024857 149 GDAITF------E-SEVDKVYLSTP------TKIAILDHERKRTFVLRKD-GLPDAVVWNPWDKKAKAMADFGDDEYKHM 214 (261)
Q Consensus 149 ~~~~~l------~-~~~D~vy~~~~------~~~~l~d~~~~~~i~i~~~-~~~~~vvw~p~~~~~~~~~d~~~~~~~~~ 214 (261)
...+++ . .++|++|.... ..++|.++.+ +.|+|.++ ++++++||+|..-. ....+.+
T Consensus 180 ~~~~df~~~~~l~~~~~D~~f~~~~~~~~~~~~~~l~~~~~-~~l~l~~~~~~~~~~vyt~~~~~--------~~~~~~~ 250 (284)
T cd09022 180 GTPYDFRTGRRLGGTALDTAFTDLTRDADGRARARLTGPDG-RGVELWADESFPWVQVFTADTLP--------PPGRRRG 250 (284)
T ss_pred CCCccCcCCccccCccccccccccccCCCCcEEEEEECCCC-CEEEEEECCCCCEEEEECCCCCC--------CCCCCCE
Confidence 112222 2 26899997532 2688998876 89999996 68999999984210 0012579
Q ss_pred EEeccCcc--------CCCEEeCCCCEEEEEEEE
Q 024857 215 LCVEAACV--------EKPIILKPGEEWRGRQEI 240 (261)
Q Consensus 215 vCvEp~~~--------~~~~~L~PGe~~~~~~~i 240 (261)
||||||+. .+.++|+|||+++.+++|
T Consensus 251 iclEP~~~~~da~n~~~~~~~L~pge~~~~~~~i 284 (284)
T cd09022 251 LAVEPMTCPPNAFNSGTDLIVLAPGETHTASWGI 284 (284)
T ss_pred EEEccCCCCCCcCcCCCCcEEECCCCEEEEEEeC
Confidence 99999984 256899999999988875
No 10
>PF01263 Aldose_epim: Aldose 1-epimerase; InterPro: IPR008183 Aldose 1-epimerase (5.1.3.3 from EC) (mutarotase) is the enzyme responsible for the anomeric interconversion of D-glucose and other aldoses between their alpha- and beta-forms. The sequence of mutarotase from two bacteria, Acinetobacter calcoaceticus and Streptococcus thermophilus is available []. It has also been shown that, on the basis of extensive sequence similarities, a mutarotase domain seems to be present in the C-terminal half of the fungal GAL10 protein which encodes, in the N-terminal part, UDP-glucose 4-epimerase.; GO: 0016853 isomerase activity, 0005975 carbohydrate metabolic process; PDB: 1YGA_A 3DCD_A 2CIQ_A 2CIS_A 2CIR_A 2HTB_C 2HTA_B 3Q1N_A 1NSZ_B 1NSR_B ....
Probab=99.97 E-value=3e-31 Score=234.73 Aligned_cols=213 Identities=20% Similarity=0.277 Sum_probs=143.0
Q ss_pred cceEEcccccCCCCCCCceeeecCCcEEecCCCCCCCCCCCceEEEEEecCChhhhccCCcceEEEEEEEEcCCCe-EEE
Q 024857 15 RIQSQFVEFANHGSLEKHGFARSRVWSIDPDPPPFSANSSSQACVDLILKHSEEEVKIWPHRYEFRLRITLGPGGD-LML 93 (261)
Q Consensus 15 G~PvlFP~fg~~~~~~~HGfar~~~W~v~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~ty~L~~~~~-L~i 93 (261)
|.++|||+++. ..+++|||+|++.|+|++.. . .++++|++..+.++.++|||+|+++++|+|.+ ++ |+|
T Consensus 70 g~~~~l~~~~~-~~~~~HG~~~~~~w~v~~~~-------~-~~~~~~~~~~~~~~~~~yP~~~~l~~~y~L~~-~~~L~i 139 (300)
T PF01263_consen 70 GKPYCLPWNGP-YPNPIHGFARNKPWEVEEQS-------E-DDSVSFTLVSDPDGEEGYPFDFRLRITYTLDE-NGKLTI 139 (300)
T ss_dssp TEEEEBSSSBT-TTBEETBSGGGSB-EEEEEE-------E-TTEEEEEEEEEETTHHHSSSEEEEEEEEEEET-TEEEEE
T ss_pred CEEEEeeeccC-CCcCCCCCcccccEEEEEec-------c-cceEEEEEEecCccceeeccceeeEEEEEECC-CCeEEE
Confidence 67777777665 56789999999999999873 1 24566666553333467999999999999998 78 999
Q ss_pred EEEEEecCCCCeeEEEeeeeceeeecC----CcceeEEecCCCCceee-CCCCcceeeee------CCeeeec-C--CCC
Q 024857 94 TSRIRNTNTDGKSFAFTFAYHTYFAVS----DISEVRVEGLETLDYLD-NLKDKERFTEQ------GDAITFE-S--EVD 159 (261)
Q Consensus 94 ~~~v~N~n~~~~~~pf~~g~HpYF~v~----~~~~l~~~gl~~~~~~d-~l~~~~~~~~~------~~~~~l~-~--~~D 159 (261)
+++|+|. + ++|||++|+||||+++ +...+++.+.....+-+ .+++++..... .....+. . .+|
T Consensus 140 ~~~v~n~--~-~~~p~~~g~HpyF~l~~~~~~~~~~~~~~~~~~~~~~~~lptg~~~~~~~~~~d~~~~~~i~~~~~~~D 216 (300)
T PF01263_consen 140 TYEVTND--G-KPMPFNLGFHPYFNLPGEDIDDHQLQVPADEYLELDERLLPTGELAPVKGTPFDFRQGRPIGDDIPGLD 216 (300)
T ss_dssp EEEEEES--S-SEEEEBEEEEEEEETTCTSGTTGEEEEEEEEEEEEETTSSEEEEEEETTTCETCGSSSEEECSSCTCEE
T ss_pred EEEEEec--C-ccEEeeccccceEEcCCcceeeeEEEeccceeeecccccCCceeeecccCCccccccCeeecccccccc
Confidence 9999999 9 9999999999999999 45567776421111111 23333211100 1112222 2 689
Q ss_pred eEEeCCC-CeEEEEeCCCCcEEEEEEC-CCCcEEEeCCcccccccccCCCCCCccceEEeccCccC-CCEEeCCCCEEEE
Q 024857 160 KVYLSTP-TKIAILDHERKRTFVLRKD-GLPDAVVWNPWDKKAKAMADFGDDEYKHMLCVEAACVE-KPIILKPGEEWRG 236 (261)
Q Consensus 160 ~vy~~~~-~~~~l~d~~~~~~i~i~~~-~~~~~vvw~p~~~~~~~~~d~~~~~~~~~vCvEp~~~~-~~~~L~PGe~~~~ 236 (261)
++|.... ....+.....+++|.|+.. ++|++|||+|+.+. ..+...+...+..++|+|++... +.++|+|||+++.
T Consensus 217 ~~f~~~~~~~~~~~~~~~~~~i~l~~~~~~p~~~v~t~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~pGe~~~~ 295 (300)
T PF01263_consen 217 HCFVLDPPGRPVIRLRSPGSGISLEFSTSFPWLVVWTPGFDP-KYICIEPIAIEPDFVPDEANNPGKGLIVLAPGESYSF 295 (300)
T ss_dssp EEEEESSSSEEEEEEETTTEEEEEEEEESSSEEEEEEETTSS-TEETTCEEECEEESECECCCECCHEGEEEETTSEEEE
T ss_pred eEEEcCCCccEEEEeecccceEEEEecCCCCcEEEECCCCcc-cccCCcccccCCCeeecccccCCCCCEEECCCCEEEE
Confidence 9998765 5555555556677777665 68999999996542 11111111223345555555433 4699999999999
Q ss_pred EEEEE
Q 024857 237 RQEIS 241 (261)
Q Consensus 237 ~~~i~ 241 (261)
+++|+
T Consensus 296 ~~~~~ 300 (300)
T PF01263_consen 296 STRYT 300 (300)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99985
No 11
>cd09019 galactose_mutarotase_like galactose mutarotase_like. Galactose mutarotase catalyzes the conversion of beta-D-galactose to alpha-D-galactose. Beta-D-galactose is produced by the degradation of lactose, a disaccharide composed of beta-D-glucose and beta-D-galactose. This epimerization reaction is the first step in the four-step Leloir pathway, which converts galactose into metabolically important glucose. This epimerization step is followed by the phosophorylation of alpha-D-galactose by galactokinase, an enzyme which can only act on the alpha anomer. A glutamate and a histidine residue of the galactose mutarotase have been shown to be critical for catalysis, the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen. Galactose mutarotase is a member of the aldose-1-epimerase superfamily.
Probab=99.96 E-value=5.6e-28 Score=216.76 Aligned_cols=194 Identities=17% Similarity=0.292 Sum_probs=133.3
Q ss_pred ceeeecCCcEEecCCCCCCCCCCCceEEEEEecCChhhhccCCcceEEEEEEEEcCCCeEEEEEEEEecCCCCeeEEEee
Q 024857 32 HGFARSRVWSIDPDPPPFSANSSSQACVDLILKHSEEEVKIWPHRYEFRLRITLGPGGDLMLTSRIRNTNTDGKSFAFTF 111 (261)
Q Consensus 32 HGfar~~~W~v~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~ty~L~~~~~L~i~~~v~N~n~~~~~~pf~~ 111 (261)
|||+| +.|++... ++++|+|++.+.+ ...+|||+|+++++|+|.++++|+|+++++| +++|||++
T Consensus 92 ~G~~~-~~w~~~~~---------~~~~v~l~~~~~~-~~~gyP~~~~~~v~y~L~~~~~L~i~~~~~~----~~~~p~~~ 156 (326)
T cd09019 92 KGFDK-RVWDVEEV---------EENSVTFSLVSPD-GEEGFPGNLTVTVTYTLTDDNELTIEYEATT----DKPTPVNL 156 (326)
T ss_pred ccccC-cEEeEEec---------cCCEEEEEEECCc-ccCCCCeEEEEEEEEEECCCCEEEEEEEEEe----CCCeEecc
Confidence 77777 49999876 2567899998764 4689999999999999986579999999995 49999999
Q ss_pred eeceeeecCC-----cceeEEecCCCCcee----eCCCCcceeeeeCCee------------------eecCCCCeEEe-
Q 024857 112 AYHTYFAVSD-----ISEVRVEGLETLDYL----DNLKDKERFTEQGDAI------------------TFESEVDKVYL- 163 (261)
Q Consensus 112 g~HpYF~v~~-----~~~l~~~gl~~~~~~----d~l~~~~~~~~~~~~~------------------~l~~~~D~vy~- 163 (261)
|+||||+++. +.+..+. ++...++ +.++++.......... ....++|++|.
T Consensus 157 g~HpyFnl~~~~~~~~~~~~L~-~~a~~~~~~d~~~iPtG~~~~~~~~~~df~~~~~l~~~~~~~~~~~~~~~~D~~f~l 235 (326)
T cd09019 157 TNHSYFNLAGEGSGDILDHELQ-INADRYLPVDEELIPTGEILPVAGTPFDFRKPKPIGRIDLDDEQLKLGGGYDHNFVL 235 (326)
T ss_pred cceeeEecCCCCCCCccceEEE-EecCcEEeeCCCCCcCCCceecCCCCccccCccCccccccchhhcccCCCcceEEEE
Confidence 9999999983 3343332 1122333 2344442111000000 01237999997
Q ss_pred -CC----CCeEEEEeCCCCcEEEEEECCCCcEEEeCCcccccccccCCCCCCccceEEeccCcc--------CCCEEeCC
Q 024857 164 -ST----PTKIAILDHERKRTFVLRKDGLPDAVVWNPWDKKAKAMADFGDDEYKHMLCVEAACV--------EKPIILKP 230 (261)
Q Consensus 164 -~~----~~~~~l~d~~~~~~i~i~~~~~~~~vvw~p~~~~~~~~~d~~~~~~~~~vCvEp~~~--------~~~~~L~P 230 (261)
.+ ...++|.++.++++|+|.++ .+.+|||++.........+-.....+.+||||||+. .+.++|+|
T Consensus 236 ~~~~~~~~~~a~l~~~~sg~~l~v~t~-~p~~~vyT~~~~~~~~~~~~~~~~~~~~iclEpq~~pdA~n~~~~g~~~L~p 314 (326)
T cd09019 236 DKGGGKLRPAARLTSPESGRKLEVYTT-QPGVQFYTGNFLDGTPGGGGKVYGKRSGFCLETQHFPDAPNHPNFPSIILRP 314 (326)
T ss_pred CCCCCccceeEEEEcCCCCcEEEEecC-CCEEEEEeCCCCCcccCCCCcEeCCCCEEEEeccCCCCcccccCCCCeEECC
Confidence 32 23688999988999999885 899999998432110000000012357999999973 24689999
Q ss_pred CCEEEEEEEEEE
Q 024857 231 GEEWRGRQEISA 242 (261)
Q Consensus 231 Ge~~~~~~~i~~ 242 (261)
||+++..++|++
T Consensus 315 ge~~~~~~~y~f 326 (326)
T cd09019 315 GETYRHTTVYRF 326 (326)
T ss_pred CCEEEEEEEEEC
Confidence 999999998874
No 12
>COG2017 GalM Galactose mutarotase and related enzymes [Carbohydrate transport and metabolism]
Probab=99.96 E-value=9.4e-28 Score=213.31 Aligned_cols=205 Identities=19% Similarity=0.242 Sum_probs=142.3
Q ss_pred CcceEEcccccCCC-----------CC-------CCceeeecCCcEEecCCCCCCCCCCCceEEEEEecCChhhhccCCc
Q 024857 14 LRIQSQFVEFANHG-----------SL-------EKHGFARSRVWSIDPDPPPFSANSSSQACVDLILKHSEEEVKIWPH 75 (261)
Q Consensus 14 gG~PvlFP~fg~~~-----------~~-------~~HGfar~~~W~v~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~ 75 (261)
.+.++|+|+.||.. .+ ++||+++..+|+|..... .+...+++.+.+.+ .+|||
T Consensus 60 ~~ga~l~p~anRI~~g~f~~~G~~y~L~~N~~~~~lHG~~~~~~~~v~~~~~------~~~~~~~l~~~~~~---~gyP~ 130 (308)
T COG2017 60 YGGAILGPYANRISNGRFTLDGKTYQLPPNEGGNALHGGARDFDWQVWEAEE------DDNAEFSLVLRDGE---DGYPG 130 (308)
T ss_pred cccceecCccCcccCCEEEECCEEEEeCCCCCCccccCCccCCCeeEEEEEe------ccCCEEEEEecccC---CCCCc
Confidence 38899999999984 33 499999999999998741 12225566665443 45999
Q ss_pred ceEEEEEEEEcCCCeEEEEEEEEecCCCCeeEEEeeeeceeeecCCcce---eEEecCCCCcee---e--CCCCcce--e
Q 024857 76 RYEFRLRITLGPGGDLMLTSRIRNTNTDGKSFAFTFAYHTYFAVSDISE---VRVEGLETLDYL---D--NLKDKER--F 145 (261)
Q Consensus 76 ~f~l~~ty~L~~~~~L~i~~~v~N~n~~~~~~pf~~g~HpYF~v~~~~~---l~~~gl~~~~~~---d--~l~~~~~--~ 145 (261)
+|+++++|+|.+ ++|+|+|+++|. ++++|||++|+||||+++.... +... ....|+ + .++.+.. .
T Consensus 131 ~l~~~vtY~L~~-~~L~v~~~~~n~--~~~~~p~~~g~HpYFnl~~~~~~~~~~~~--~~~~~l~~~~~~~ip~~~~~~~ 205 (308)
T COG2017 131 NLEATVTYTLNE-DGLTVTYEVTND--GDEPTPFNLGNHPYFNLPGDGRLEHILAI--ASDYYLPVDDEEPIPTGDIKRE 205 (308)
T ss_pred eEEEEEEEEEcC-CCEEEEEEEEeC--CCCcceecccccceEecCCCCCcccEEEe--cCCceEEcccCCCCCccccccc
Confidence 999999999998 569999999999 9999999999999999996542 2221 122333 1 1222210 0
Q ss_pred -eeeCCeeeecCCCCeEEeCC-----CCeEEEEeCCCCcEEEEEECCCCcEEEeCCcccccccccCCCCCCccceEEecc
Q 024857 146 -TEQGDAITFESEVDKVYLST-----PTKIAILDHERKRTFVLRKDGLPDAVVWNPWDKKAKAMADFGDDEYKHMLCVEA 219 (261)
Q Consensus 146 -~~~~~~~~l~~~~D~vy~~~-----~~~~~l~d~~~~~~i~i~~~~~~~~vvw~p~~~~~~~~~d~~~~~~~~~vCvEp 219 (261)
......+.....+|+.|... ...+.|.++.++++|+|+++ .|.++||+.... + .+.++||||
T Consensus 206 ~~~~~~~~~~~~~~d~~f~~~~~~~~~~~a~l~~~~~~~~l~v~t~-~p~~~~yt~~~~-~----------~~~~~clEp 273 (308)
T COG2017 206 PKPLEDDFAADDPYDHAFLLNGARGLKPAARLYDPDSGLSLEVETD-EPFVQLYTGNFL-A----------GRDGLCLEP 273 (308)
T ss_pred ccccccccccccccccceeeccccCCcceEEEEcCCCCeEEEEEeC-CCeEEEEeCCCC-C----------cCCeEEeee
Confidence 00011111111247777533 34899999999999999986 566666653110 0 147999999
Q ss_pred Cc-c--------CCCEEeCCCCEEEEEEEEEEee
Q 024857 220 AC-V--------EKPIILKPGEEWRGRQEISAVP 244 (261)
Q Consensus 220 ~~-~--------~~~~~L~PGe~~~~~~~i~~~~ 244 (261)
|+ . .+.++|+|||+++..++|+++.
T Consensus 274 ~~~~pdA~n~~~~~~~~L~pGe~~~~~~~~~~~~ 307 (308)
T COG2017 274 QSGLPDAFNHPGFGLIVLEPGETYSAETRFRFES 307 (308)
T ss_pred ccCCCCcCCCCCcccceeCCCCEEEEEEEEEEec
Confidence 98 3 1346799999999999999864
No 13
>PLN00194 aldose 1-epimerase; Provisional
Probab=99.95 E-value=7.4e-26 Score=203.60 Aligned_cols=225 Identities=15% Similarity=0.191 Sum_probs=149.9
Q ss_pred ccCCCCCCCCcceEEcccccCCC-----------CC-------CCceeee---cCCcEEecCCCCCCCCCCCceEEEEEe
Q 024857 5 CFFLVARPLLRIQSQFVEFANHG-----------SL-------EKHGFAR---SRVWSIDPDPPPFSANSSSQACVDLIL 63 (261)
Q Consensus 5 ~~~~~~~~rgG~PvlFP~fg~~~-----------~~-------~~HGfar---~~~W~v~~~~~~~~~~~~~~~~v~l~l 63 (261)
.+|...+...| +++.|+.||+. .+ .+||+.+ .+.|+|+... ++++.+|+|++
T Consensus 53 ~~y~~~~~~~G-a~lgp~anRI~~g~~~~~G~~y~l~~N~~~~~lHGg~~G~~~~~w~v~~~~------~~~~~~v~~~l 125 (337)
T PLN00194 53 EPYKNDSPYFG-AIVGRVANRIKGAKFTLNGVTYKLPPNNGPNSLHGGPKGFSKVVWEVAKYK------KGEKPSITFKY 125 (337)
T ss_pred HHHhhCCCccC-CeeCCCCCceeCCEEEECCEEEEeccCCCCcccCCCCcccCceEEeEEEec------cCCCcEEEEEE
Confidence 34554333344 44999988874 23 3697543 4899998762 22346899999
Q ss_pred cCChhhhccCCcceEEEEEEEEcCCCeEEEEEEEEecCCCCeeEEEeeeeceeeecCC-----cceeEEecCCCCcee--
Q 024857 64 KHSEEEVKIWPHRYEFRLRITLGPGGDLMLTSRIRNTNTDGKSFAFTFAYHTYFAVSD-----ISEVRVEGLETLDYL-- 136 (261)
Q Consensus 64 ~~~~~~~~~~P~~f~l~~ty~L~~~~~L~i~~~v~N~n~~~~~~pf~~g~HpYF~v~~-----~~~l~~~gl~~~~~~-- 136 (261)
.+.+ ...+|||+|+++++|+|.++++|+|+++++|. +++|||++|+||||+++. +.+..+.- +...++
T Consensus 126 ~~~~-~~~gyP~~~~~~v~Y~L~~~~~L~i~~~~~n~---~~~~p~~~g~HpYFnL~~~~~~~i~~~~L~i-~a~~~~~~ 200 (337)
T PLN00194 126 HSFD-GEEGFPGDLSVTVTYTLLSSNTLRLDMEAKPL---NKATPVNLAQHTYWNLAGHNSGDILSHKIQI-FGSHITPV 200 (337)
T ss_pred ECCC-cCCCCCEEEEEEEEEEECCCCeEEEEEEEEEC---CCCeEEEccccceEEcCCCCCCCcCCeEEEE-ecCCEEEe
Confidence 8754 36799999999999999854799999999985 689999999999999974 33433331 223333
Q ss_pred --eCCCCcceeeeeCCeeee-------------cCCCCeEEeCC-------CCeEEEEeCCCCcEEEEEECCCCcEEEeC
Q 024857 137 --DNLKDKERFTEQGDAITF-------------ESEVDKVYLST-------PTKIAILDHERKRTFVLRKDGLPDAVVWN 194 (261)
Q Consensus 137 --d~l~~~~~~~~~~~~~~l-------------~~~~D~vy~~~-------~~~~~l~d~~~~~~i~i~~~~~~~~vvw~ 194 (261)
+.+++++.....+..++| ..++|++|+-. ...++|.++.++++|+|.++ .|.+|||+
T Consensus 201 d~~~iPtG~~~~v~~t~~Df~~~~~l~~~~~~~~~g~Dh~f~l~~~~~~~~~~~a~l~~~~sg~~l~v~t~-~p~v~vyT 279 (337)
T PLN00194 201 DENLIPTGEILPVKGTPFDFTTPKKIGSRINELPKGYDHNYVLDGEEKEGLKKAAKVKDPKSGRVLELWTN-APGMQFYT 279 (337)
T ss_pred CCCcCcCCceeeCCCCCcccCCCcCcchhhccccCCcceEEEECCCCcccceeeEEEEcCCCCCEEEEEeC-CCEEEEEC
Confidence 234544221111111111 13789999721 22588999888999999996 79999998
Q ss_pred Ccccc-cccccCCCCCCccceEEeccCccC--------CCEEeCCCCEEEEEEEEEEe
Q 024857 195 PWDKK-AKAMADFGDDEYKHMLCVEAACVE--------KPIILKPGEEWRGRQEISAV 243 (261)
Q Consensus 195 p~~~~-~~~~~d~~~~~~~~~vCvEp~~~~--------~~~~L~PGe~~~~~~~i~~~ 243 (261)
+..-. ..++... .-..+.+||||||... +.++|+|||.+...++|+|.
T Consensus 280 ~n~~~~~~~~~~~-~~~~~~~i~lEpq~~pda~n~~~~~~~~L~pge~~~~~t~y~f~ 336 (337)
T PLN00194 280 SNYVNGVKGKGGA-VYGKHAGLCLETQGFPDAVNQPNFPSVVVNPGEKYKHTMLFEFS 336 (337)
T ss_pred CCCCCCccCCCCC-EeCCCCEEEEeccCCCCcccCCCCCCeEECCCCEEEEEEEEEEe
Confidence 64211 0000000 0011469999999731 45899999999999999885
No 14
>TIGR02636 galM_Leloir galactose mutarotase. Members of this protein family act as galactose mutarotase (D-galactose 1-epimerase) and participate in the Leloir pathway for galactose/glucose interconversion. All members of the seed alignment for this model are found in gene clusters with other enzymes of the Leloir pathway. This enzyme family belongs to the aldose 1-epimerase family, described by pfam model pfam01263. However, the enzyme described as aldose 1-epimerase itself (EC 5.1.3.3) is called broadly specific for D-glucose, L-arabinose, D-xylose, D-galactose, maltose and lactose. The restricted genome context for genes in this family suggests members should act primarily on D-galactose.
Probab=99.94 E-value=6.1e-25 Score=197.58 Aligned_cols=219 Identities=15% Similarity=0.211 Sum_probs=147.7
Q ss_pred cccCCCCCCCCcceEEcccccCCC------------------CCCCceee---ecCCcEEec-CCCCCCCCCCCceEEEE
Q 024857 4 NCFFLVARPLLRIQSQFVEFANHG------------------SLEKHGFA---RSRVWSIDP-DPPPFSANSSSQACVDL 61 (261)
Q Consensus 4 ~~~~~~~~~rgG~PvlFP~fg~~~------------------~~~~HGfa---r~~~W~v~~-~~~~~~~~~~~~~~v~l 61 (261)
.++|...+.-.| -++.|+.||.. ...+||+. +.+.|++.. . +..+|+|
T Consensus 47 ~~~y~~~~~~~G-a~igp~anRI~~g~f~~~G~~y~L~~N~~~n~lHGg~~G~~~~~W~v~~~~---------~~~~v~l 116 (335)
T TIGR02636 47 MEEYYKQDAYLG-ATVGRYANRIANGSFEIDGETYQLSINQGGNCLHGGPEGFDKRRWNIEELQ---------EEVQVKF 116 (335)
T ss_pred HHHHhhCCCccC-CCcCCCCceecCCEEEECCEEEEeccCCCCcccCCCCccccccEEeEeeec---------CCCEEEE
Confidence 445554433333 45678888864 22489998 789999976 4 2457899
Q ss_pred EecCChhhhccCCcceEEEEEEEEcCCCeEEEEEEEEecCCCCeeEEEeeeeceeeecCCc------ce--eEEecCCCC
Q 024857 62 ILKHSEEEVKIWPHRYEFRLRITLGPGGDLMLTSRIRNTNTDGKSFAFTFAYHTYFAVSDI------SE--VRVEGLETL 133 (261)
Q Consensus 62 ~l~~~~~~~~~~P~~f~l~~ty~L~~~~~L~i~~~v~N~n~~~~~~pf~~g~HpYF~v~~~------~~--l~~~gl~~~ 133 (261)
++.+.+. ..+||++++++++|+|+++++|+|+++++ ++++|||++|+||||++++. .+ |++. ..
T Consensus 117 ~~~~~~~-~~gyPg~l~~~vtY~L~~~~~L~i~~~a~----~d~~tp~nlt~H~YFnL~g~~~~~~i~~~~L~i~---a~ 188 (335)
T TIGR02636 117 SLESPDG-DQGFPGNLTVSVTYTLTDDNELTIEYEAT----TDKATPFNLTNHVYFNLDGADAGSDVLSHELQLN---AD 188 (335)
T ss_pred EEECCCc-CCCCCeEEEEEEEEEECCCCEEEEEEEEE----ECCceEEeccccceEEcCCCCCCCChhceEEEEE---CC
Confidence 9987543 67999999999999996558999999998 78999999999999999752 23 4443 22
Q ss_pred cee----eCCCCcceeeeeCCeee------------------ecCCCCeEEeCC------CCeEEEEeCCCCcEEEEEEC
Q 024857 134 DYL----DNLKDKERFTEQGDAIT------------------FESEVDKVYLST------PTKIAILDHERKRTFVLRKD 185 (261)
Q Consensus 134 ~~~----d~l~~~~~~~~~~~~~~------------------l~~~~D~vy~~~------~~~~~l~d~~~~~~i~i~~~ 185 (261)
.++ +.+++++.....+..++ ...++|++|+-. ...++|.++.++++|+|.++
T Consensus 189 ~~~~~d~~~iPtG~~~~v~~t~~Dfr~~~~l~~~~~~~~~~~~~~g~D~~f~l~~~~~~~~~~a~l~~~~sg~~l~v~t~ 268 (335)
T TIGR02636 189 RYLPLDEEGIPLGQLKPVDGTSFDFRKEKAIGQDFLANDQQQLAKGYDHAFLLNGERLDGKPAAILTSPDEDLSLEVFTT 268 (335)
T ss_pred cEEEeCCCcCcCCceecCCCCccccCCCcCcCcccccccccccCCCcceEEEECCCCCCCceeEEEEcCCCCcEEEEecC
Confidence 333 12444321111011111 112799999731 12578999999999999995
Q ss_pred CCCcEEEeCCcccccccccCCCCC--CccceEEeccCccC--------CCE--EeCCCCEEEEEEEEEEe
Q 024857 186 GLPDAVVWNPWDKKAKAMADFGDD--EYKHMLCVEAACVE--------KPI--ILKPGEEWRGRQEISAV 243 (261)
Q Consensus 186 ~~~~~vvw~p~~~~~~~~~d~~~~--~~~~~vCvEp~~~~--------~~~--~L~PGe~~~~~~~i~~~ 243 (261)
.|.+|||++..-.. ..+ .... ..+..||||||+.. +.+ +|+|||+++..+.|+|.
T Consensus 269 -~p~~~vyT~~~~~~-~~~-~~g~~~~~~~gialE~q~~pd~~n~~~~~~~~~~L~pge~~~~~t~y~f~ 335 (335)
T TIGR02636 269 -QPALQIYTGNFLAG-TPN-RGGKKYVDHAGLALETQFLPDSPNHPEWGDISCILSPGQEYQHQTRYQFI 335 (335)
T ss_pred -CCEEEEecCCCcCC-ccC-CCCcEeCCCcEEEEecccCCCcccccCCCCCceEECCCCEEEEEEEEEEC
Confidence 89999999732110 000 0001 13579999999841 223 59999999999999873
No 15
>PRK11055 galM galactose-1-epimerase; Provisional
Probab=99.92 E-value=2.5e-23 Score=187.24 Aligned_cols=219 Identities=16% Similarity=0.175 Sum_probs=146.1
Q ss_pred cccCCCCCCCCcceEEcccccCCC------------------CCCCceee---ecCCcEEecCCCCCCCCCCCceEEEEE
Q 024857 4 NCFFLVARPLLRIQSQFVEFANHG------------------SLEKHGFA---RSRVWSIDPDPPPFSANSSSQACVDLI 62 (261)
Q Consensus 4 ~~~~~~~~~rgG~PvlFP~fg~~~------------------~~~~HGfa---r~~~W~v~~~~~~~~~~~~~~~~v~l~ 62 (261)
.++|...+ ..---++.||.||+. ...+||.. +.+.|+++.. +..+|+|+
T Consensus 53 ~~~y~~~~-~~~Ga~iGr~anRI~~g~f~~~G~~y~L~~N~~~n~lHGg~~G~~~~~W~v~~~---------~~~~v~l~ 122 (342)
T PRK11055 53 PEDYPDQA-AYLGASVGRYANRIANSRFTLDGETYQLSPNQGGNQLHGGPEGFDKRRWQIVNQ---------NDRQVTFS 122 (342)
T ss_pred HHHHhhCC-CccCceeCCcCCcccCCEEEECCEEEEcccCCCCcccCCCCcccCCcEEEEEEc---------cCCEEEEE
Confidence 34454333 223346788888864 23589975 5689999765 23578998
Q ss_pred ecCChhhhccCCcceEEEEEEEEcCCCeEEEEEEEEecCCCCeeEEEeeeeceeeecCC------cce--eEEecCCCCc
Q 024857 63 LKHSEEEVKIWPHRYEFRLRITLGPGGDLMLTSRIRNTNTDGKSFAFTFAYHTYFAVSD------ISE--VRVEGLETLD 134 (261)
Q Consensus 63 l~~~~~~~~~~P~~f~l~~ty~L~~~~~L~i~~~v~N~n~~~~~~pf~~g~HpYF~v~~------~~~--l~~~gl~~~~ 134 (261)
+.+.+ ...+||++++++++|+|.++++|+|+++++ +++++||++|+||||+++. +.+ |++. ...
T Consensus 123 ~~~~~-g~~GyPg~l~~~vtY~L~~~~~l~i~~~a~----~d~~tp~nlt~H~YFnL~g~~~~~~i~~h~L~i~---a~~ 194 (342)
T PRK11055 123 LSSPD-GDQGFPGNLGATVTYRLTDDNRVSITYRAT----VDKPCPVNLTNHAYFNLDGAEEGSDVRNHKLQIN---ADE 194 (342)
T ss_pred EECCC-cCCCCCeEEEEEEEEEEcCCCeEEEEEEEE----cCCCeEEeccccceEECCCCCCCCCccceEEEEe---cCC
Confidence 88653 467999999999999999756898888876 7899999999999999974 122 4443 223
Q ss_pred ee----eCCCCcceeeeeCCe------------------eeecCCCCeEEeCC------CCeEEEEeCCCCcEEEEEECC
Q 024857 135 YL----DNLKDKERFTEQGDA------------------ITFESEVDKVYLST------PTKIAILDHERKRTFVLRKDG 186 (261)
Q Consensus 135 ~~----d~l~~~~~~~~~~~~------------------~~l~~~~D~vy~~~------~~~~~l~d~~~~~~i~i~~~~ 186 (261)
++ +.+++++.....+.. .....++|++|+-. ...++|.++.++++|+|.++
T Consensus 195 ~~~~d~~~iPTG~~~~v~~t~~DFr~~~~l~~~~~~~~~~~~~~g~D~~fvl~~~~~~~~~~a~l~~~~sg~~l~v~t~- 273 (342)
T PRK11055 195 YLPVDEGGIPNGGLKSVAGTSFDFRQPKTIAQDFLADDDQQKVKGYDHAFLLQAKGDGKKPAAHLWSPDEKLQMKVYTT- 273 (342)
T ss_pred EEEECcccCccCcEeccCCCcccccCCcCcCcccccchhcccCCCcceEEEECCCCcccceeEEEEcCCCCeEEEEEcC-
Confidence 32 134444221100000 11113799999631 12478999889999999985
Q ss_pred CCcEEEeCCcccccccccCCCCC--CccceEEeccCccC----------CCEEeCCCCEEEEEEEEEEe
Q 024857 187 LPDAVVWNPWDKKAKAMADFGDD--EYKHMLCVEAACVE----------KPIILKPGEEWRGRQEISAV 243 (261)
Q Consensus 187 ~~~~vvw~p~~~~~~~~~d~~~~--~~~~~vCvEp~~~~----------~~~~L~PGe~~~~~~~i~~~ 243 (261)
.|.++||++..-... .. ..+. ..+..||||||... +.++|.|||.++..+.++|.
T Consensus 274 ~p~lqvYT~n~~~~~-~~-~~g~~~~~~~gialE~q~~Pda~n~~~f~~~~~~L~pg~~y~~~t~y~f~ 340 (342)
T PRK11055 274 APALQFYSGNFLAGT-PS-RGGGPYADYAGLALESQFLPDSPNHPEWPQPDCILKPGEEYRSLTEYQFI 340 (342)
T ss_pred CCEEEEecCCccCCc-cC-CCCcEeCCCceEEEEcccCCCcccccCCCCCCeEECCCCEEEEEEEEEEE
Confidence 899999996321100 00 0111 12468999999731 26899999999999999985
No 16
>PTZ00485 aldolase 1-epimerase; Provisional
Probab=99.88 E-value=5.7e-21 Score=172.95 Aligned_cols=230 Identities=10% Similarity=0.081 Sum_probs=149.9
Q ss_pred cccCCCCCCCCcceEEcccccCCC----------------------CCCCceeeecCCcEEecCCCCCCCCCCCceEEEE
Q 024857 4 NCFFLVARPLLRIQSQFVEFANHG----------------------SLEKHGFARSRVWSIDPDPPPFSANSSSQACVDL 61 (261)
Q Consensus 4 ~~~~~~~~~rgG~PvlFP~fg~~~----------------------~~~~HGfar~~~W~v~~~~~~~~~~~~~~~~v~l 61 (261)
.++|...+.-.|++ +.|+.||.. +...+||.+ +.|++.... +.+..+|+|
T Consensus 58 ~~~Y~~~~~y~Ga~-iGr~AnRI~~G~f~ldG~~YqL~~Neg~n~LHGG~~gf~~-~~W~v~~~~------~~~~~~V~f 129 (376)
T PTZ00485 58 PEEAYADPDYMGAT-VGRCAGRVAGGVFTLDGVKYYTQKNRGENTCHCGDDAYHK-KHWGMKLIE------TANVIGVRF 129 (376)
T ss_pred HHHHhhCCCccCcE-eCCCCCeEECCEEEECCEEEEccCCCCCcccCCCCCccce-eeeeEEEec------cCCCcEEEE
Confidence 46676666555655 456677763 113468875 999985431 123458999
Q ss_pred EecCChhhhccCCcceEEEEEEEEc--CCCeEEEE---EEEEecCCCCeeEEEeeeeceeeecCC---------------
Q 024857 62 ILKHSEEEVKIWPHRYEFRLRITLG--PGGDLMLT---SRIRNTNTDGKSFAFTFAYHTYFAVSD--------------- 121 (261)
Q Consensus 62 ~l~~~~~~~~~~P~~f~l~~ty~L~--~~~~L~i~---~~v~N~n~~~~~~pf~~g~HpYF~v~~--------------- 121 (261)
++.+. +...+||++++++++|+|. ++++|+|+ ++++|+ +++++|+++++|+|||++.
T Consensus 130 ~~~~~-dg~~GfPG~l~v~vtYtL~~~~~~~L~i~y~a~~~~n~--~d~~Tp~nltnH~YFNL~g~~~~~~~~~~~~~~~ 206 (376)
T PTZ00485 130 NYTSP-HMENGFPGELVSKVTYSIERSKPNVLKTIYDSYIPETS--PADATPVNIFNHAYWNLNGIPERNGKKNAVWVQP 206 (376)
T ss_pred EEECC-CcCCCCCEEEEEEEEEEEecCCCCEEEEEEEEEecccc--CCccceeeeccceeEEcCCCccccccccccccCC
Confidence 99874 3578999999999999996 24899999 677777 9999999999999999963
Q ss_pred --cce--eEEecCCCCcee----eCCCCcce---------eee---eCCee----ee---cCCCCeEEeC-C--C----C
Q 024857 122 --ISE--VRVEGLETLDYL----DNLKDKER---------FTE---QGDAI----TF---ESEVDKVYLS-T--P----T 167 (261)
Q Consensus 122 --~~~--l~~~gl~~~~~~----d~l~~~~~---------~~~---~~~~~----~l---~~~~D~vy~~-~--~----~ 167 (261)
+.+ |++. ...++ +.+|+++. |.+ -++.+ .+ ..++|++|+- . . .
T Consensus 207 ~~i~~h~L~i~---a~~~l~~de~~IPTG~i~~v~~t~fDfr~~~~ig~~~~~~~~~~~~~~G~Dh~fvl~~~~~~~~~~ 283 (376)
T PTZ00485 207 ESVRNHWLRVP---ASRVAEADRMAIPTGEFLSVEGTGLDFRQGRVIGDCIDDVALLDRDPCGYDHPLAIDGWEKGKLML 283 (376)
T ss_pred CcccceEEEEe---cCcEEEeCcccCccCceeccCCCCccCcCCcccchhhhhhhhhcccCCCCCcceEECCCCCccccE
Confidence 112 4442 22332 13444321 110 00111 01 1379999963 2 1 1
Q ss_pred eEEEEeCCCCcEEEEEECCCCcEEEeCCcccccccccCCCCC--CccceEEeccCcc----C-----CCEEeCCCCE-EE
Q 024857 168 KIAILDHERKRTFVLRKDGLPDAVVWNPWDKKAKAMADFGDD--EYKHMLCVEAACV----E-----KPIILKPGEE-WR 235 (261)
Q Consensus 168 ~~~l~d~~~~~~i~i~~~~~~~~vvw~p~~~~~~~~~d~~~~--~~~~~vCvEp~~~----~-----~~~~L~PGe~-~~ 235 (261)
.++|.++.+|++|+|.++ .|.++||+...-...... ..+. .....||+|||.. + ..++|.|||. +.
T Consensus 284 ~a~l~~p~sg~~l~v~T~-~P~~qiYT~n~l~~~~~~-~~g~~~~~~~giclE~Q~~PDa~n~~~~fp~~vl~pge~~~~ 361 (376)
T PTZ00485 284 HAEAKSPVTNICMKVYST-FPCMWVYTANNKPLPASG-GPGQRYARWTGMGLEPQYFPDVANHYPKYPSCIVRRGERRFT 361 (376)
T ss_pred EEEEEcCCCCCEEEEEEC-CCEEEEECCCCCCccccC-CCCcCcCCCCEEEEeccCCCCcccccCCCCCeEECCCCeEEE
Confidence 478999999999999995 999999996321110000 1111 1236899999973 2 2379999999 88
Q ss_pred EEEEEEEeecCCCCCC
Q 024857 236 GRQEISAVPSSYCSGQ 251 (261)
Q Consensus 236 ~~~~i~~~~~~~~~~~ 251 (261)
.++.++|.-. ||.+
T Consensus 362 ~~t~y~f~~~--~~~~ 375 (376)
T PTZ00485 362 ETILNEFTVE--CSSK 375 (376)
T ss_pred EEEEEEEEee--ccCC
Confidence 8888888544 5543
No 17
>cd09023 Aldose_epim_Ec_c4013 Aldose 1-epimerase, similar to Escherichia coli c4013. Proteins, similar to Escherichia coli c4013, are uncharacterized members of aldose-1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=99.81 E-value=5.2e-19 Score=155.83 Aligned_cols=189 Identities=17% Similarity=0.169 Sum_probs=123.4
Q ss_pred CCCCceeeecCCcEEecCCCCCCCCCCCceEEEEEecCChhhhccCCcceEEEEEEEEcCCCeEEEEEEEEecCCCCeeE
Q 024857 28 SLEKHGFARSRVWSIDPDPPPFSANSSSQACVDLILKHSEEEVKIWPHRYEFRLRITLGPGGDLMLTSRIRNTNTDGKSF 107 (261)
Q Consensus 28 ~~~~HGfar~~~W~v~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~ty~L~~~~~L~i~~~v~N~n~~~~~~ 107 (261)
..++||.+++.+|+++.... .+++...|+++....+....+|||.++.+++|+|.+ ++|+++.+|+|+ |+++|
T Consensus 70 ~~~lHG~~~~~p~~~~~~~~----~~~~~~~v~l~~~~~~~~~~g~~~~l~~~i~~~l~~-~~l~i~~~VtN~--g~~~~ 142 (284)
T cd09023 70 EYPLHGRISNTPAELVGVEE----DEEGDYEIEVSGEVREAALFGENLRLERTIETDLGS-NEIRLEDRVTNE--GFRPT 142 (284)
T ss_pred cccCcccccCCCcceEEEEe----ccCCCeEEEEEEEEEEeeeecCceEEEEEEEEecCC-ceEEEEEEEEeC--CCCCC
Confidence 57899999999999987631 012344566655543333567999999999999997 899999999999 99999
Q ss_pred EEeeeeceeeecCCcc-eeEEecCCCCcee--e-CCCCcce-eeeeCCeeeecCCCCeEEeCC-------CCeEEEEeCC
Q 024857 108 AFTFAYHTYFAVSDIS-EVRVEGLETLDYL--D-NLKDKER-FTEQGDAITFESEVDKVYLST-------PTKIAILDHE 175 (261)
Q Consensus 108 pf~~g~HpYF~v~~~~-~l~~~gl~~~~~~--d-~l~~~~~-~~~~~~~~~l~~~~D~vy~~~-------~~~~~l~d~~ 175 (261)
|+++++|+||..+-.. +.++.. +...++ + ....+.. ...... +-....+.+|... ...+.|.++.
T Consensus 143 P~~~~~H~n~~~p~l~~~~~l~~-p~~~~~p~~~~~~~~~~~~~~~~~--p~~~~~e~v~~~~~~~d~~g~~~~~l~~~~ 219 (284)
T cd09023 143 PHMLLYHVNFGYPLLDEGARLEI-PSKEVTPRDAHAAEGLASWNTYLA--PTPGFAEQVYFHEPAADEDGRAPAALVNPR 219 (284)
T ss_pred cceEEeeEEcCCcccCCCCEEEe-cccccccCChhhcccccccccccC--CCCCCccEEEEEeccccCCCceeEEEEcCC
Confidence 9999999999886322 333331 111211 1 0000000 000000 0011223344211 2468899887
Q ss_pred CCcEEEEEEC--CCCcEEEeCCcccccccccCCCCCCccceEEeccCcc-----------CCCEEeCCCCEEEEEE
Q 024857 176 RKRTFVLRKD--GLPDAVVWNPWDKKAKAMADFGDDEYKHMLCVEAACV-----------EKPIILKPGEEWRGRQ 238 (261)
Q Consensus 176 ~~~~i~i~~~--~~~~~vvw~p~~~~~~~~~d~~~~~~~~~vCvEp~~~-----------~~~~~L~PGe~~~~~~ 238 (261)
.+..+.|..+ .+|++++|+..... ...+||||++- .+++.|+|||++++.+
T Consensus 220 ~g~~~~l~~~~~~~p~~~~W~~~~~~------------~y~lalEP~T~~p~~~~~~~~~g~l~~L~PGEs~~~~l 283 (284)
T cd09023 220 LGLGVEVRFDTDTLPYLTQWKNTGAG------------AYVLGLEPATNFPNGRAFEREQGELPTLAPGESRSYRL 283 (284)
T ss_pred CCcEEEEEEehhhCCHHHHHhccCCC------------ccEEEEccccCCCcchHHHHHCCCcceECCCCeEEEee
Confidence 7777777776 49999999964221 35777999982 2469999999998764
No 18
>KOG1604 consensus Predicted mutarotase [Carbohydrate transport and metabolism]
Probab=99.64 E-value=2.3e-14 Score=124.81 Aligned_cols=194 Identities=18% Similarity=0.320 Sum_probs=132.2
Q ss_pred CCceeeecCCcEEecCCCCCCCCCCCceEEEEEecCChhhhccCCcceEEEEEEEEcCCCeEEEEEEEEecCCCCeeEEE
Q 024857 30 EKHGFARSRVWSIDPDPPPFSANSSSQACVDLILKHSEEEVKIWPHRYEFRLRITLGPGGDLMLTSRIRNTNTDGKSFAF 109 (261)
Q Consensus 30 ~~HGfar~~~W~v~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~ty~L~~~~~L~i~~~v~N~n~~~~~~pf 109 (261)
..-||-+ ..|++..... ...++|+..+ +++.++||++.++.++|+|..++.|.+.+..+-. +++.|+
T Consensus 112 g~~gf~~-~~w~v~~~~~--------~~~i~f~~~s-~dg~eg~PG~l~V~vtYtLn~~n~l~i~~~A~~~---~~~TPi 178 (353)
T KOG1604|consen 112 GIKGFDK-VIWEVVKHQP--------DGVIVFSHLS-PDGDEGFPGDLKVTVTYTLNVANRLLIMMEATAL---DKATPI 178 (353)
T ss_pred Ccccccc-eEEEEEEecC--------CCEEEEEEEC-CCCCCCCCccEEEEEEEEEccCCeeeeeehhhcc---CCCcce
Confidence 4567876 8999998741 2226888877 5567899999999999999988899998888733 789999
Q ss_pred eeeeceeeecCC-----cc--eeEEecCCCCcee--e--CCCCcceeeee------------CC-eeeec--CCCCeEEe
Q 024857 110 TFAYHTYFAVSD-----IS--EVRVEGLETLDYL--D--NLKDKERFTEQ------------GD-AITFE--SEVDKVYL 163 (261)
Q Consensus 110 ~~g~HpYF~v~~-----~~--~l~~~gl~~~~~~--d--~l~~~~~~~~~------------~~-~~~l~--~~~D~vy~ 163 (261)
++++|+|||+.. +. ++++.+ ..++ | .+|+++..... ++ .-.|. .+.|..|.
T Consensus 179 NLtnHsYfNL~g~~s~~I~~heI~i~a---~~~~evd~~~iPTG~I~~v~~t~fD~r~p~~lgd~~~~~~~i~g~d~n~~ 255 (353)
T KOG1604|consen 179 NLTNHSYFNLAGHNSGGIEGHEIQIEA---SKITEVDDTLIPTGEITPVKGTTFDFRKPTVLGDRIKQFECIVGYDINYV 255 (353)
T ss_pred eeccceeEeccCCCCCCccceEEEEee---cccEecCCccccccceEeccCccccccCCeeccccccccccccCCCcceE
Confidence 999999999984 22 255542 1221 1 23444321110 11 11122 36777774
Q ss_pred CC---C-----CeEEEEeCCCCcEEEEEECCCCcEEEeCCcccccccccCCCC---C--CccceEEeccCcc----C---
Q 024857 164 ST---P-----TKIAILDHERKRTFVLRKDGLPDAVVWNPWDKKAKAMADFGD---D--EYKHMLCVEAACV----E--- 223 (261)
Q Consensus 164 ~~---~-----~~~~l~d~~~~~~i~i~~~~~~~~vvw~p~~~~~~~~~d~~~---~--~~~~~vCvEp~~~----~--- 223 (261)
.. + ..+++.++.++|.++|.+ +.|.+.+|+-. -|.|..+ . ....++|+|++.. +
T Consensus 256 ~~~~~~~~~l~~v~k~~hp~Sgr~lEv~T-nqPgvqfYTgn-----~~~~~~gk~g~~y~k~g~~cletq~~pda~n~~~ 329 (353)
T KOG1604|consen 256 LDGSVPPNKLRKVAKAVHPKSGRKLEVST-NQPGVQFYTGN-----FLPDIKGKKGAVYPKHGGLCLETQYFPDAVNHPN 329 (353)
T ss_pred EccCCCCcccEEEEEEEcCccCcEEEEEe-CCCcEEEEecc-----ccccccCCCceEeeccceEEeecccCccccccCC
Confidence 21 1 247789999999999999 49999999841 1111110 0 1235999999873 1
Q ss_pred -CCEEeCCCCEEEEEEEEEEeec
Q 024857 224 -KPIILKPGEEWRGRQEISAVPS 245 (261)
Q Consensus 224 -~~~~L~PGe~~~~~~~i~~~~~ 245 (261)
..+.|+|||++..++.++|.-.
T Consensus 330 fp~v~l~pGE~Y~h~~~y~Fsv~ 352 (353)
T KOG1604|consen 330 FPSVILRPGETYTHETVYKFSVV 352 (353)
T ss_pred CCceEecCCCeeeeEEEEEEecc
Confidence 2399999999999999998643
No 19
>cd09269 deoxyribose_mutarotase deoxyribose mutarotase_like. Salmonella enterica serovar Typhi DeoM (earlier named as DeoX) is a mutarotase with high specificity for deoxyribose. It is encoded by one of four genes beonging to the deoK operon. This operon has also been found in Escherichia coli where it is more common in pathogenic than in commensal strains and is associated with pathogenicity. It has been found on a pathogenicity island from a human blood isolate AL863 and confers the ability to use deoxyribose as a carbon source; deoxyribose is not fermented by non-pathogenic E.coli K-12. Proteins in this family are members of the aldose-1-epimerase superfamily. Aldose 1-epimerases, or mutarotases, are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechani
Probab=99.24 E-value=2e-10 Score=101.31 Aligned_cols=193 Identities=13% Similarity=0.143 Sum_probs=108.6
Q ss_pred CCCCceeeecCCcEEecCCCCCCCCCCCceEEEEEecCChhhhccCCcceEEEEEEEEcC-CCeEEEEEEEEecCCCCee
Q 024857 28 SLEKHGFARSRVWSIDPDPPPFSANSSSQACVDLILKHSEEEVKIWPHRYEFRLRITLGP-GGDLMLTSRIRNTNTDGKS 106 (261)
Q Consensus 28 ~~~~HGfar~~~W~v~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~ty~L~~-~~~L~i~~~v~N~n~~~~~ 106 (261)
..++||=..+.+|+......+ .+++...++++-.. .....||++|+++.+|+|.. .+.|+|+++|+|+ ++.|
T Consensus 61 ~~~LHG~~~~~p~~~~w~~~~---~d~~~~~l~l~g~~--~~~~~fg~~y~a~~~i~L~~g~~~l~i~~~VtN~--g~~p 133 (293)
T cd09269 61 THPLHGEFPCAPMDEAWLEVG---EDASGDYLALTGEY--EYVQGFGHHYLAQPSVTLRAGSALFDIGMDVTNL--SAQP 133 (293)
T ss_pred ccCCcCCcCCCCccceEEEEE---ecCCCCEEEEEEEE--EeeeccCccEEEEEEEEEeCCCCEEEEEEEEEEC--CCCC
Confidence 468999955555544321100 01223444443332 22368999999999999974 3689999999999 9999
Q ss_pred EEEeeeeceeeecCCcceeEEecCCC-CceeeCCC-----Ccc--ee----eeeC---CeeeecCC--CCeEEeCC----
Q 024857 107 FAFTFAYHTYFAVSDISEVRVEGLET-LDYLDNLK-----DKE--RF----TEQG---DAITFESE--VDKVYLST---- 165 (261)
Q Consensus 107 ~pf~~g~HpYF~v~~~~~l~~~gl~~-~~~~d~l~-----~~~--~~----~~~~---~~~~l~~~--~D~vy~~~---- 165 (261)
||+++++|+||......++...-+.. ......++ +.. .+ ..+. +.+..... -..||...
T Consensus 134 ~p~~~~~H~nfg~~~garl~~p~~~~~~~~~~~~p~~v~p~~~w~~~~~~~~~~~~~~~~~~~P~~~~~E~V~~~~~~~~ 213 (293)
T cd09269 134 MPLMYMCHMNYAYVEGARIVQNLPDEAFVLRRSVPAHVKPTPAWLAYNEALVADPARGDVLDKPDLYDPEIVFFADDLGK 213 (293)
T ss_pred ChhhEecccccCCCCCCEEEccCCcccceeeecccCccCCchhhccchHHHhhCchhhhhccCCCCCCccEEEEeecccc
Confidence 99999999999884433333211000 00000010 000 00 0000 00110111 22344321
Q ss_pred ---CCeEEEEeCCCCcEEEEEEC--CCCcEEEeCCcccccccccCCCCCCccceEEe-ccCcc-----------CCCEEe
Q 024857 166 ---PTKIAILDHERKRTFVLRKD--GLPDAVVWNPWDKKAKAMADFGDDEYKHMLCV-EAACV-----------EKPIIL 228 (261)
Q Consensus 166 ---~~~~~l~d~~~~~~i~i~~~--~~~~~vvw~p~~~~~~~~~d~~~~~~~~~vCv-Ep~~~-----------~~~~~L 228 (261)
...+.|.++..+ .+.+..+ .+|++..|--.... ..-..+ ||.+- ...+.|
T Consensus 214 ~~~~~~~~l~n~~g~-~~~~~f~~~~lP~~~~W~~~~~~------------~~v~~~~~PaT~~p~g~~~ar~~G~l~~L 280 (293)
T cd09269 214 YTGWAHFMMVHPDGD-AFYTRFSTAEFPYATRWILYNGD------------QQVAAFALPATCRPEGYLAAKEAGTLRTL 280 (293)
T ss_pred cCCcEEEEEECCCCC-EEEEEEchhhCChhheehhcCCC------------cceEEEEccCCCCcCChHHHHHCCCccee
Confidence 146788888655 6666654 79999999631111 123344 49872 235899
Q ss_pred CCCCEEEEEEEE
Q 024857 229 KPGEEWRGRQEI 240 (261)
Q Consensus 229 ~PGe~~~~~~~i 240 (261)
+|||+.++++++
T Consensus 281 ~pGe~~~f~l~~ 292 (293)
T cd09269 281 APGETRRFSVTT 292 (293)
T ss_pred CCCCeEEEEEec
Confidence 999999987654
No 20
>PF14486 DUF4432: Domain of unknown function (DUF4432); PDB: 3TY1_A.
Probab=98.91 E-value=2.6e-08 Score=88.51 Aligned_cols=192 Identities=16% Similarity=0.175 Sum_probs=101.8
Q ss_pred CCCceeeecCCcEEecCCCCCCCCCCCceEEEEEecCChhhhccCCcceEEEEEEEE--cCCCeEEEEEEEEecCCCCee
Q 024857 29 LEKHGFARSRVWSIDPDPPPFSANSSSQACVDLILKHSEEEVKIWPHRYEFRLRITL--GPGGDLMLTSRIRNTNTDGKS 106 (261)
Q Consensus 29 ~~~HGfar~~~W~v~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~ty~L--~~~~~L~i~~~v~N~n~~~~~ 106 (261)
.|+||=..+.+|+.+.... .+++...++++=.-.+ ...|-.++.++=++++ .. +.++|..+|+|+ +..+
T Consensus 86 ~~LHG~i~~~Pa~~v~~~~----~~~~~~~i~v~G~v~~--~~~fg~~l~l~r~i~~~~g~-~~i~i~d~VtN~--~~~p 156 (302)
T PF14486_consen 86 YPLHGRISNTPAEHVWLEI----WDGDGYEIEVSGEVRE--AAGFGENLRLERTIRLRAGS-NTIRIEDRVTNL--GFQP 156 (302)
T ss_dssp E-TTBSGGGS--SEEEEEE----ESSTT--EEEEEEEEE--EETTTEEEEEEEEEEE-TT--SEEEEEEEEEE---SSS-
T ss_pred ccccccccCCCcceEEEEE----ecCCCcEEEEEEEEEE--EEeccCcEEEEEEEEEECCC-cEEEEEEEEEEC--CCCC
Confidence 6899999999998665421 1112233433221111 2456677777777777 44 789999999999 9999
Q ss_pred EEEeeeeceeeecCCcc-eeEEecCCCCceeeCCCCcceeeeeCCeeee--cCCCCeEEeC-----CCC--eEEEEeCCC
Q 024857 107 FAFTFAYHTYFAVSDIS-EVRVEGLETLDYLDNLKDKERFTEQGDAITF--ESEVDKVYLS-----TPT--KIAILDHER 176 (261)
Q Consensus 107 ~pf~~g~HpYF~v~~~~-~l~~~gl~~~~~~d~l~~~~~~~~~~~~~~l--~~~~D~vy~~-----~~~--~~~l~d~~~ 176 (261)
||+.+..|.-|-.+-.+ ..++. .+...+.........-...-..+.- ....+.||.. ..+ .+.|..+..
T Consensus 157 ~p~m~lyH~N~G~pll~eg~ri~-~p~~~~~~~~~~a~~~~~~~~~~~~P~~~~~E~Vy~~~~~~d~~G~~~~~l~n~~~ 235 (302)
T PF14486_consen 157 MPLMYLYHMNFGYPLLDEGARIV-APTKEVTPRDDRAAEGIADWDRMPAPQPGFPEQVYFHDLLADEDGWAHAALVNPDG 235 (302)
T ss_dssp EEEEEEEEEEE-TTT-STT-EEE---EEEEEESSGGGGGGSTTTTB---S-TT---EEEEEEE---TTSEEEEEEE-SSS
T ss_pred chhHHhhhhccCccccCCCcEEE-cCcccccCCchhhhcCCccceecCCCCCCCCcEEEEecccccCCCcEEEEEECCCC
Confidence 99999999999888322 23332 1222222111000000000000110 1123455542 123 478888888
Q ss_pred CcEEEEEEC--CCCcEEEeCCcccccccccCCCCCCccceEEeccCcc-----------CCCEEeCCCCEEEEEEEEEE
Q 024857 177 KRTFVLRKD--GLPDAVVWNPWDKKAKAMADFGDDEYKHMLCVEAACV-----------EKPIILKPGEEWRGRQEISA 242 (261)
Q Consensus 177 ~~~i~i~~~--~~~~~vvw~p~~~~~~~~~d~~~~~~~~~vCvEp~~~-----------~~~~~L~PGe~~~~~~~i~~ 242 (261)
+..+.|..+ .+|++.+|-..... ...++|||.+. ...+.|+|||+.++++++.|
T Consensus 236 g~g~~v~f~~~~lP~~~~Wk~~~~~------------~yv~gLEP~T~~p~g~~~~~~~G~l~~L~pge~~~~~l~~~v 302 (302)
T PF14486_consen 236 GLGFEVRFDTSQLPYLTQWKNYGGG------------EYVLGLEPATCRPEGRAAAREAGTLPMLAPGESREFSLEFGV 302 (302)
T ss_dssp S-EEEEEEETTTS-EEEEEEEES-T-------------EEEEEEEESS-SS-HHHHHHTT--EEE-TT-EEEEEEEEE-
T ss_pred CcEEEEEEchHHCChhHhheeCCCC------------EeEEEEecccCCCCCHHHHHhCCCcceECCCCeEEEEEEecC
Confidence 788877764 79999999643211 25789999982 23599999999999988865
No 21
>PF09095 DUF1926: Domain of unknown function (DUF1926); InterPro: IPR015179 Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This entry represents a domain found in prokaryotic alpha-amylase (3.2.1.1 from EC) and 4-alpha-glucanotransferase (2.4.1.25 from EC). This domain adopts a beta-sandwich fold, in which two layers of anti-parallel beta-sheets are arranged in a nearly parallel fashion. The exact function of this domain is, as yet, unknown, however it has been proposed that it may play a role in transglycosylation reactions []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 1K1X_B 1K1W_A 1K1Y_A.
Probab=86.82 E-value=9.6 Score=33.49 Aligned_cols=133 Identities=17% Similarity=0.205 Sum_probs=62.3
Q ss_pred CCcceEEEEEEEEcCCCeEEEEEEEEecCCCCee--EEEeeeeceeeecCCcceeEEecCCCCceeeCCCCcceeeeeCC
Q 024857 73 WPHRYEFRLRITLGPGGDLMLTSRIRNTNTDGKS--FAFTFAYHTYFAVSDISEVRVEGLETLDYLDNLKDKERFTEQGD 150 (261)
Q Consensus 73 ~P~~f~l~~ty~L~~~~~L~i~~~v~N~n~~~~~--~pf~~g~HpYF~v~~~~~l~~~gl~~~~~~d~l~~~~~~~~~~~ 150 (261)
.+....++-+|+|.. ++|.++|+++ . ++.+ +-|++=+|-.+...+..+..+. ...+. ..
T Consensus 144 ~~~~~~l~K~y~l~~-~~l~V~Y~l~-~--~~~~~~~~f~vEiNla~~~~~~~~~~~~-------~~~~~--~~------ 204 (278)
T PF09095_consen 144 EGHPITLEKRYRLTK-NGLQVDYRLT-E--SPEPISLLFGVEINLAMLSGDAPDRYFI-------IGSLG--EP------ 204 (278)
T ss_dssp SEEEEEEEEEEEEET-TEEEEEEEEE----ESS---EEEEEEEEE----------------------SS-----------
T ss_pred ccCceEEEEEEEEcC-CEEEEEEEEE-E--CCCCcceEEEEEEeeccccccccccccc-------ccccC--CC------
Confidence 678899999999998 8999999999 4 4444 4444444433222221111111 00000 00
Q ss_pred eeeecCCCCeEEeCCCCeEEEEeCCCCcEEEEEECCCCcEEEeCCcccccccccCCCCCCccceEEeccCccCCCEEeCC
Q 024857 151 AITFESEVDKVYLSTPTKIAILDHERKRTFVLRKDGLPDAVVWNPWDKKAKAMADFGDDEYKHMLCVEAACVEKPIILKP 230 (261)
Q Consensus 151 ~~~l~~~~D~vy~~~~~~~~l~d~~~~~~i~i~~~~~~~~vvw~p~~~~~~~~~d~~~~~~~~~vCvEp~~~~~~~~L~P 230 (261)
... .....+.|.|+-.+..|+++.+ ..+-+|.-+... ...+.-+-+.-...+|+-+.. ++.|.|
T Consensus 205 -~~~---------~~~~~i~l~D~~~~~~i~l~~~--~~~~~~~~Pi~T-vSqSE~Gfe~i~Qg~~~~~~~---~v~l~~ 268 (278)
T PF09095_consen 205 -IEE---------FEVKEIELEDEWLGGDITLEFS--RPAELWAFPIET-VSQSEKGFEKIYQGVALMFLW---PVSLNP 268 (278)
T ss_dssp --EE---------EEEEEEEEEETTTTEEEEEEEE--EEEEEEEEEEEE-EEEETTEEEEEEEEEEEEEEE---EE----
T ss_pred -ccc---------cceEEEEEecCccCceEEEEEC--CCceEEEeeEEe-EEcccCCceEEecceEEEEEE---EEeccc
Confidence 000 0014567777777778887774 344455422110 000000001112466766633 577999
Q ss_pred CCEEEEEEEE
Q 024857 231 GEEWRGRQEI 240 (261)
Q Consensus 231 Ge~~~~~~~i 240 (261)
|++|+.++++
T Consensus 269 ~e~~~~ti~f 278 (278)
T PF09095_consen 269 GEEWKTTIKF 278 (278)
T ss_dssp SSEEEEEEEE
T ss_pred CcEEEEEEEC
Confidence 9999987653
No 22
>COG0832 UreB Urea amidohydrolase (urease) beta subunit [Amino acid transport and metabolism]
Probab=74.18 E-value=4.8 Score=29.53 Aligned_cols=41 Identities=20% Similarity=0.295 Sum_probs=27.0
Q ss_pred EEEEcCCCeEEEEEEEEecCCCCeeEEEeeeeceeeecCCcceeEEe
Q 024857 82 RITLGPGGDLMLTSRIRNTNTDGKSFAFTFAYHTYFAVSDISEVRVE 128 (261)
Q Consensus 82 ty~L~~~~~L~i~~~v~N~n~~~~~~pf~~g~HpYF~v~~~~~l~~~ 128 (261)
.++|.. ....++++|.|+ |++ |.+.|-|-.|.=-+ ..|.|+
T Consensus 12 ~IelN~-gr~~~~i~V~Nt--GDR--PIQVGSHfHF~EvN-~aL~FD 52 (106)
T COG0832 12 DIELNA-GRPTVTIEVANT--GDR--PIQVGSHFHFFEVN-RALSFD 52 (106)
T ss_pred cEEEeC-CCcceEEEEeec--CCC--ceEeecceeehhhC-cceeec
Confidence 356665 667788889999 998 66777777663211 235554
No 23
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=73.30 E-value=4.9 Score=29.60 Aligned_cols=31 Identities=26% Similarity=0.409 Sum_probs=23.4
Q ss_pred EEEcCCCeEEEEEEEEecCCCCeeEEEeeeeceeee
Q 024857 83 ITLGPGGDLMLTSRIRNTNTDGKSFAFTFAYHTYFA 118 (261)
Q Consensus 83 y~L~~~~~L~i~~~v~N~n~~~~~~pf~~g~HpYF~ 118 (261)
+.|.. +.=.++++|+|+ +++ |++.|-|-.|-
T Consensus 13 I~lN~-gr~~~~l~V~Nt--GDR--pIQVGSH~HF~ 43 (101)
T cd00407 13 IELNA-GREAVTLKVKNT--GDR--PIQVGSHYHFF 43 (101)
T ss_pred eEeCC-CCCEEEEEEEeC--CCc--ceEEccccchh
Confidence 45665 556788899999 888 77888887773
No 24
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=73.05 E-value=5.3 Score=29.39 Aligned_cols=40 Identities=18% Similarity=0.314 Sum_probs=27.1
Q ss_pred EEEcCCCeEEEEEEEEecCCCCeeEEEeeeeceeeecCCcceeEEe
Q 024857 83 ITLGPGGDLMLTSRIRNTNTDGKSFAFTFAYHTYFAVSDISEVRVE 128 (261)
Q Consensus 83 y~L~~~~~L~i~~~v~N~n~~~~~~pf~~g~HpYF~v~~~~~l~~~ 128 (261)
+.|.. +.=.++++|+|+ +|+ |++.|-|-.|-=- ...|.|+
T Consensus 13 I~ln~-gr~~~~l~V~Nt--GDR--PIQVGSHyHF~E~-N~aL~FD 52 (101)
T TIGR00192 13 ITINE-GRKTVSVKVKNT--GDR--PIQVGSHFHFFEV-NRALDFD 52 (101)
T ss_pred EEeCC-CCcEEEEEEEeC--CCc--ceEEccccchhhc-Ccceeec
Confidence 45665 556688999999 888 7788888777321 1236664
No 25
>PF00699 Urease_beta: Urease beta subunit CAUTION: The Prosite patterns do not match this subunit of the enzyme; InterPro: IPR002019 Urease 3.5.1.5 from EC is a nickel-binding enzyme that catalyzes the hydrolysis of urea to carbon dioxide and ammonia []: Urea + H2O = CO2 + 2 NH3 Historically, it was the first enzyme to be crystallized (in 1926). It is mainly found in plant seeds and microorganisms. In plants, urease is a hexamer of identical chains. In bacteria [], it consists of either two or three different subunits (alpha IPR005847 from INTERPRO, beta, described in this entry, and gamma IPR002026 from INTERPRO). The structure of the urease complex is known []. This subunit does not appear to take part in the catalytic mechanism. This subunit is known (confusingly) as alpha in Helicobacter.; GO: 0009039 urease activity, 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 1EJS_B 1EJW_B 1A5N_B 1A5K_B 1A5M_B 1EJR_B 1EJX_B 1A5L_B 1KRB_B 1FWA_B ....
Probab=72.86 E-value=4.7 Score=29.59 Aligned_cols=40 Identities=20% Similarity=0.313 Sum_probs=24.6
Q ss_pred EEEcCCCeEEEEEEEEecCCCCeeEEEeeeeceeeecCCcceeEEe
Q 024857 83 ITLGPGGDLMLTSRIRNTNTDGKSFAFTFAYHTYFAVSDISEVRVE 128 (261)
Q Consensus 83 y~L~~~~~L~i~~~v~N~n~~~~~~pf~~g~HpYF~v~~~~~l~~~ 128 (261)
+.|.. +.=+++++|+|+ ||+ |++.|-|-.|-=.+ ..|.|+
T Consensus 12 I~lN~-gr~~~~l~V~N~--GDR--PIQVGSH~HF~E~N-~aL~FD 51 (100)
T PF00699_consen 12 IELNA-GRERITLEVTNT--GDR--PIQVGSHYHFFEVN-PALEFD 51 (100)
T ss_dssp EETTT-TSEEEEEEEEE---SSS---EEEETTS-GGGS--TTEES-
T ss_pred EEecC-CCcEEEEEEEeC--CCc--ceEEccccCHHHHh-HHhhhh
Confidence 45565 567788999999 988 77888888774322 235553
No 26
>PRK13203 ureB urease subunit beta; Reviewed
Probab=71.73 E-value=5.6 Score=29.33 Aligned_cols=31 Identities=26% Similarity=0.343 Sum_probs=23.1
Q ss_pred EEEcCCCeEEEEEEEEecCCCCeeEEEeeeeceeee
Q 024857 83 ITLGPGGDLMLTSRIRNTNTDGKSFAFTFAYHTYFA 118 (261)
Q Consensus 83 y~L~~~~~L~i~~~v~N~n~~~~~~pf~~g~HpYF~ 118 (261)
+.|.. +.=.++++|+|+ +++ |++.|-|-.|-
T Consensus 13 I~ln~-gr~~~~l~V~Nt--GDR--PIQVGSH~HF~ 43 (102)
T PRK13203 13 IELNA-GRETVTLTVANT--GDR--PIQVGSHYHFF 43 (102)
T ss_pred EEeCC-CCCEEEEEEEeC--CCC--ceEEccccchh
Confidence 45665 556688899999 988 77788887773
No 27
>PRK13202 ureB urease subunit beta; Reviewed
Probab=67.80 E-value=8 Score=28.61 Aligned_cols=40 Identities=15% Similarity=0.262 Sum_probs=26.4
Q ss_pred EEEcCCCe-EEEEEEEEecCCCCeeEEEeeeeceeeecCCcceeEEe
Q 024857 83 ITLGPGGD-LMLTSRIRNTNTDGKSFAFTFAYHTYFAVSDISEVRVE 128 (261)
Q Consensus 83 y~L~~~~~-L~i~~~v~N~n~~~~~~pf~~g~HpYF~v~~~~~l~~~ 128 (261)
+.|.. +. =.++++|+|+ ||+ |++.|-|-.|-=.+ ..|.|+
T Consensus 13 I~ln~-grr~~~~l~V~Nt--GDR--PIQVGSHyHF~E~N-~aL~FD 53 (104)
T PRK13202 13 IEMNA-AALSRLQMRIINA--GDR--PVQVGSHVHLPQAN-RALSFD 53 (104)
T ss_pred EEeCC-CCCceEEEEEEeC--CCC--ceEEccccchhhcC-cceeec
Confidence 45665 42 4678899999 988 77788887773221 236664
No 28
>PRK13205 ureB urease subunit beta; Reviewed
Probab=66.28 E-value=7.9 Score=30.62 Aligned_cols=40 Identities=23% Similarity=0.241 Sum_probs=27.0
Q ss_pred EEEcCCCeEEEEEEEEecCCCCeeEEEeeeeceeeecCCcceeEEe
Q 024857 83 ITLGPGGDLMLTSRIRNTNTDGKSFAFTFAYHTYFAVSDISEVRVE 128 (261)
Q Consensus 83 y~L~~~~~L~i~~~v~N~n~~~~~~pf~~g~HpYF~v~~~~~l~~~ 128 (261)
+.|.. +.=.++++|+|+ +++ |+++|-|-.|-=.+ ..|.|+
T Consensus 13 IelN~-GR~~i~L~V~Nt--GDR--PIQVGSHyHF~EvN-~AL~FD 52 (162)
T PRK13205 13 LTGNV-GREAKTIEIINT--GDR--PVQIGSHFHFAEVN-PSISFD 52 (162)
T ss_pred eEeCC-CCcEEEEEEEeC--CCC--ceEeccccchhhcC-cccccc
Confidence 45665 556788999999 988 77888887773322 235554
No 29
>PRK13201 ureB urease subunit beta; Reviewed
Probab=66.04 E-value=8.3 Score=29.83 Aligned_cols=31 Identities=13% Similarity=0.178 Sum_probs=23.3
Q ss_pred EEEcCCCeEEEEEEEEecCCCCeeEEEeeeeceeee
Q 024857 83 ITLGPGGDLMLTSRIRNTNTDGKSFAFTFAYHTYFA 118 (261)
Q Consensus 83 y~L~~~~~L~i~~~v~N~n~~~~~~pf~~g~HpYF~ 118 (261)
+.|.. +.=.++++|+|+ |++ |+++|-|-.|-
T Consensus 13 I~lN~-gr~~~~l~V~Nt--GDR--PIQVGSHyHF~ 43 (136)
T PRK13201 13 VEINN-HHPETVIEVENT--GDR--PIQVGSHFHFY 43 (136)
T ss_pred eEeCC-CCCEEEEEEEeC--CCc--ceEeccccchh
Confidence 45665 556688899999 988 77788887773
No 30
>PRK13204 ureB urease subunit beta; Reviewed
Probab=63.85 E-value=9.4 Score=30.28 Aligned_cols=42 Identities=21% Similarity=0.185 Sum_probs=28.2
Q ss_pred cCCcceEEE-EEEEEcCCCeEEEEEEEEecCCCCeeEEEeeeeceeee
Q 024857 72 IWPHRYEFR-LRITLGPGGDLMLTSRIRNTNTDGKSFAFTFAYHTYFA 118 (261)
Q Consensus 72 ~~P~~f~l~-~ty~L~~~~~L~i~~~v~N~n~~~~~~pf~~g~HpYF~ 118 (261)
.-|..+.+. -.+.|.. +.=.++++|+|+ |++ |+++|-|-.|-
T Consensus 24 ~~pGei~~~~~~I~lN~-gr~~~~l~V~Nt--GDR--PIQVGSHyHF~ 66 (159)
T PRK13204 24 RPVGGYVLAKDPIEINQ-GRPRTTLTVRNT--GDR--PIQIGSHFHFF 66 (159)
T ss_pred CCCCeEEeCCCCeEeCC-CCcEEEEEEEeC--CCC--ceEeccccchh
Confidence 345443322 2356776 566788999999 988 77788887773
No 31
>PRK13198 ureB urease subunit beta; Reviewed
Probab=62.37 E-value=10 Score=30.02 Aligned_cols=42 Identities=17% Similarity=0.164 Sum_probs=28.6
Q ss_pred cCCcceEE-EEEEEEcCCCeEEEEEEEEecCCCCeeEEEeeeeceeee
Q 024857 72 IWPHRYEF-RLRITLGPGGDLMLTSRIRNTNTDGKSFAFTFAYHTYFA 118 (261)
Q Consensus 72 ~~P~~f~l-~~ty~L~~~~~L~i~~~v~N~n~~~~~~pf~~g~HpYF~ 118 (261)
.-|..+.+ .=.+.|.. +.=.++++|+|+ |++ |+++|-|-.|-
T Consensus 29 ~~pGei~~~~g~I~lN~-gr~~~~l~V~Nt--GDR--PIQVGSHyHF~ 71 (158)
T PRK13198 29 TPLGGLVLAETPITFNE-NKPVTKVKVRNT--GDR--PIQVGSHFHFF 71 (158)
T ss_pred CCCceEEeCCCCeEeCC-CCcEEEEEEEeC--CCC--ceEeccccchh
Confidence 34555432 22466776 566788999999 988 77788887773
No 32
>PF14315 DUF4380: Domain of unknown function (DUF4380)
Probab=57.32 E-value=1.3e+02 Score=26.17 Aligned_cols=33 Identities=21% Similarity=0.236 Sum_probs=26.8
Q ss_pred ceEEEEEEEEcCCC-eEEEEEEEEecCCCCeeEEEe
Q 024857 76 RYEFRLRITLGPGG-DLMLTSRIRNTNTDGKSFAFT 110 (261)
Q Consensus 76 ~f~l~~ty~L~~~~-~L~i~~~v~N~n~~~~~~pf~ 110 (261)
.++++.+|+|.++. .++|+.+++|. ++.+.+++
T Consensus 110 giq~~~~i~l~~~~~~i~v~~~i~N~--~~~~~~~a 143 (274)
T PF14315_consen 110 GIQKERTITLDADRPSIEVTHRITNI--GDWPVEWA 143 (274)
T ss_pred CcEEEEEEEECCCCCEEEEEEEEEeC--CCCcceee
Confidence 57899999998743 59999999999 88877644
No 33
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=54.87 E-value=44 Score=23.63 Aligned_cols=38 Identities=24% Similarity=0.307 Sum_probs=28.6
Q ss_pred CcceEEEEEEEEcCCCeEEEEEEEEecCCCCeeEEEeeeecee
Q 024857 74 PHRYEFRLRITLGPGGDLMLTSRIRNTNTDGKSFAFTFAYHTY 116 (261)
Q Consensus 74 P~~f~l~~ty~L~~~~~L~i~~~v~N~n~~~~~~pf~~g~HpY 116 (261)
|+.++++..|.-.. . .+.++++|. |..+..|.+--+.|
T Consensus 6 ~~~~~v~~~~~~~~-g--~l~l~l~N~--g~~~~~~~v~~~~y 43 (89)
T PF05506_consen 6 PYAPEVTARYDPAT-G--NLRLTLSNP--GSAAVTFTVYDNAY 43 (89)
T ss_pred CCCCEEEEEEECCC-C--EEEEEEEeC--CCCcEEEEEEeCCc
Confidence 66777777776544 3 456677898 99999999888777
No 34
>PRK13192 bifunctional urease subunit gamma/beta; Reviewed
Probab=49.95 E-value=19 Score=29.99 Aligned_cols=43 Identities=21% Similarity=0.257 Sum_probs=30.3
Q ss_pred ccCCcceEEE-EEEEEcCCCeEEEEEEEEecCCCCeeEEEeeeeceeee
Q 024857 71 KIWPHRYEFR-LRITLGPGGDLMLTSRIRNTNTDGKSFAFTFAYHTYFA 118 (261)
Q Consensus 71 ~~~P~~f~l~-~ty~L~~~~~L~i~~~v~N~n~~~~~~pf~~g~HpYF~ 118 (261)
..+|..+.+. =.+.|.. +.=.++++|+|+ |++ |++.|-|-.|-
T Consensus 109 al~PGei~~~~~~I~lN~-gr~~~~l~V~Nt--GDR--PIQVGSHyHF~ 152 (208)
T PRK13192 109 ALYPGEILPGDGEIELNA-GRPAVTLDVTNT--GDR--PIQVGSHFHFF 152 (208)
T ss_pred ccCCCEEEcCCCCeeeCC-CCCEEEEEEEeC--CCC--ceeeccccchh
Confidence 3467775432 2366766 566788999999 988 77788887773
No 35
>PRK13986 urease subunit alpha; Provisional
Probab=48.04 E-value=20 Score=30.24 Aligned_cols=42 Identities=17% Similarity=0.332 Sum_probs=28.9
Q ss_pred cCCcceEEE-EEEEEcCCCeEEEEEEEEecCCCCeeEEEeeeeceeee
Q 024857 72 IWPHRYEFR-LRITLGPGGDLMLTSRIRNTNTDGKSFAFTFAYHTYFA 118 (261)
Q Consensus 72 ~~P~~f~l~-~ty~L~~~~~L~i~~~v~N~n~~~~~~pf~~g~HpYF~ 118 (261)
.-|..+.+. =.+.|.. +.=.++++|+|+ |++ |++.|-|-.|-
T Consensus 106 ~~PGe~~~~~~~I~lN~-gr~~~~l~V~Nt--GDR--PIQVGSHyHF~ 148 (225)
T PRK13986 106 LVPGELFLKDEDITINA-GKKAVSVKVKNV--GDR--PVQVGSHFHFF 148 (225)
T ss_pred CCCceEecCCCCeecCC-CCcEEEEEEEeC--CCC--ceeeccccchh
Confidence 446554332 2456776 566788999999 988 77888887773
No 36
>TIGR03593 yidC_nterm membrane protein insertase, YidC/Oxa1 family, N-terminal domain. Essentially all bacteria have a member of the YidC family, whose C-terminal domain is modeled by TIGR03592. The two copies are found in endospore-forming bacteria such as Bacillus subtilis appear redundant during vegetative growth, although the member designated spoIIIJ (stage III sporulation protein J) has a distinct role in spore formation. YidC, its mitochondrial homolog Oxa1, and its chloroplast homolog direct insertion into the bacterial/organellar inner (or only) membrane. This model describes an N-terminal sequence region, including a large periplasmic domain lacking in YidC members from Gram-positive species. The multifunctional YidC protein acts both with and independently of the Sec system.
Probab=44.95 E-value=1.3e+02 Score=27.33 Aligned_cols=60 Identities=13% Similarity=0.166 Sum_probs=36.2
Q ss_pred ecCCcEEecCCCCCCCCCCCceEEEEEecCChhhhccCCcceEEEEEEEEcCCC-eEEEEEEEEecCCCCeeEE
Q 024857 36 RSRVWSIDPDPPPFSANSSSQACVDLILKHSEEEVKIWPHRYEFRLRITLGPGG-DLMLTSRIRNTNTDGKSFA 108 (261)
Q Consensus 36 r~~~W~v~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~ty~L~~~~-~L~i~~~v~N~n~~~~~~p 108 (261)
.+..|++....-. ..++...|+|++... -...++.+|+|..+. .+.++++|+|. ++.+..
T Consensus 143 ~~~~~~~~~~~~~---l~~~~~~v~l~~~~~--------~G~~v~k~ytf~~~sY~i~v~~~v~N~--~~~~~~ 203 (366)
T TIGR03593 143 HRTVWQAEGGEYT---LTPGQLPVTLTWDNS--------NGVTVTKTYTFDRDSYLIDVEYKVTNN--GDAPVS 203 (366)
T ss_pred CCceEEeCCCcee---eCCCCEEEEEEEECC--------CCeEEEEEEEEeCCeEEEEeEEEEEeC--CCCCee
Confidence 3466877643100 112234566666532 237799999998732 67788888887 776544
No 37
>COG2835 Uncharacterized conserved protein [Function unknown]
Probab=38.41 E-value=13 Score=24.73 Aligned_cols=13 Identities=8% Similarity=-0.222 Sum_probs=10.9
Q ss_pred CCCCCcceEEccc
Q 024857 10 ARPLLRIQSQFVE 22 (261)
Q Consensus 10 ~~~rgG~PvlFP~ 22 (261)
=+|+.|||++.|-
T Consensus 36 YpI~dGIPvlL~~ 48 (60)
T COG2835 36 YPIRDGIPVLLPD 48 (60)
T ss_pred eecccCccccCch
Confidence 3689999999884
No 38
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=37.28 E-value=51 Score=23.19 Aligned_cols=19 Identities=11% Similarity=0.265 Sum_probs=12.6
Q ss_pred eEEEEEEEEecCCCCeeEEEe
Q 024857 90 DLMLTSRIRNTNTDGKSFAFT 110 (261)
Q Consensus 90 ~L~i~~~v~N~n~~~~~~pf~ 110 (261)
++.+.++|+|. ++++..+.
T Consensus 1 ~v~~~l~v~N~--s~~~v~l~ 19 (82)
T PF12690_consen 1 QVEFTLTVTNN--SDEPVTLQ 19 (82)
T ss_dssp -EEEEEEEEE---SSS-EEEE
T ss_pred CEEEEEEEEeC--CCCeEEEE
Confidence 36788999998 88876654
No 39
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=36.33 E-value=58 Score=29.83 Aligned_cols=28 Identities=11% Similarity=0.118 Sum_probs=22.5
Q ss_pred EEEEEEcCCCeEEEEEEEEecCCCCeeEEEe
Q 024857 80 RLRITLGPGGDLMLTSRIRNTNTDGKSFAFT 110 (261)
Q Consensus 80 ~~ty~L~~~~~L~i~~~v~N~n~~~~~~pf~ 110 (261)
..+|++-. .+|+++++|+|. |++|..++
T Consensus 255 ~A~Y~vpg-R~l~~~l~VtN~--g~~pv~Lg 282 (381)
T PF04744_consen 255 DATYRVPG-RTLTMTLTVTNN--GDSPVRLG 282 (381)
T ss_dssp EEEEESSS-SEEEEEEEEEEE--SSS-BEEE
T ss_pred ccEEecCC-cEEEEEEEEEcC--CCCceEee
Confidence 46788877 899999999999 99976544
No 40
>PF14796 AP3B1_C: Clathrin-adaptor complex-3 beta-1 subunit C-terminal
Probab=34.87 E-value=1.1e+02 Score=24.20 Aligned_cols=20 Identities=25% Similarity=0.134 Sum_probs=16.6
Q ss_pred EEeCCCCEEEEEEEEEEeec
Q 024857 226 IILKPGEEWRGRQEISAVPS 245 (261)
Q Consensus 226 ~~L~PGe~~~~~~~i~~~~~ 245 (261)
-.|+||++.+..+.|-|.+.
T Consensus 124 ~~L~pg~s~t~~lgIDF~DS 143 (145)
T PF14796_consen 124 ESLEPGASVTVSLGIDFNDS 143 (145)
T ss_pred cccCCCCeEEEEEEEecccC
Confidence 57999999999998887543
No 41
>PRK05089 cytochrome C oxidase assembly protein; Provisional
Probab=32.19 E-value=2.9e+02 Score=22.84 Aligned_cols=52 Identities=10% Similarity=0.110 Sum_probs=33.5
Q ss_pred ceEEEEEecCChhhhccCCcceEEEEE-EEEcCCCeEEEEEEEEecCCCCeeEEEee
Q 024857 56 QACVDLILKHSEEEVKIWPHRYEFRLR-ITLGPGGDLMLTSRIRNTNTDGKSFAFTF 111 (261)
Q Consensus 56 ~~~v~l~l~~~~~~~~~~P~~f~l~~t-y~L~~~~~L~i~~~v~N~n~~~~~~pf~~ 111 (261)
+-.|+.++..+- ..+-||.|+-+.+ +++..+..-.+.|.++|+ +++++.-..
T Consensus 62 ~R~I~V~F~a~~--~~~lpW~F~P~q~~v~V~pGE~~~~~y~a~N~--sd~~i~g~A 114 (188)
T PRK05089 62 SRTITVEFDANV--NGGLPWEFKPEQRSVDVHPGELNLVFYEAENL--SDRPIVGQA 114 (188)
T ss_pred CcEEEEEEeccC--CCCCCceEEeeeeEEEEcCCCeEEEEEEEECC--CCCcEEEEE
Confidence 445666776432 3567888875433 334443456678999999 999876544
No 42
>cd06535 CIDE_N_CAD CIDE_N domain of CAD nuclease. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and the release of active DFF40/CAD nuclease.
Probab=30.86 E-value=16 Score=25.56 Aligned_cols=22 Identities=23% Similarity=0.622 Sum_probs=17.5
Q ss_pred ceEEeccCccCCCEEeCCCCEEEE
Q 024857 213 HMLCVEAACVEKPIILKPGEEWRG 236 (261)
Q Consensus 213 ~~vCvEp~~~~~~~~L~PGe~~~~ 236 (261)
.|-|+++.+. .+.|.|||+|++
T Consensus 56 yF~tLp~nT~--lmvL~~gq~W~g 77 (77)
T cd06535 56 YFPTLPDNTE--LVLLTPGQSWQG 77 (77)
T ss_pred HHhcCCCCcE--EEEEcCCCccCC
Confidence 5778888764 689999999974
No 43
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=30.77 E-value=69 Score=29.34 Aligned_cols=27 Identities=15% Similarity=0.151 Sum_probs=22.0
Q ss_pred EEEEEcCCCeEEEEEEEEecCCCCeeEEEe
Q 024857 81 LRITLGPGGDLMLTSRIRNTNTDGKSFAFT 110 (261)
Q Consensus 81 ~ty~L~~~~~L~i~~~v~N~n~~~~~~pf~ 110 (261)
.+|.+-+ .+|+++++|+|. ++++..++
T Consensus 275 a~Y~VPG-R~l~~~~~VTN~--g~~~vrlg 301 (399)
T TIGR03079 275 ANYDVPG-RALRVTMEITNN--GDQVISIG 301 (399)
T ss_pred cEEecCC-cEEEEEEEEEcC--CCCceEEE
Confidence 4688876 899999999999 99976543
No 44
>PF00942 CBM_3: Cellulose binding domain; InterPro: IPR001956 This domain is involved in cellulose binding [] and is found associated with a wide range of bacterial glycosyl hydrolases. The structure for this domain is known []; it forms a beta sandwich.; GO: 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 2L8A_A 4TF4_B 3TF4_B 1JS4_A 1TF4_B 1NBC_A 2YLK_A 3ZQX_A 2XFG_B 2XBT_A ....
Probab=30.58 E-value=1.3e+02 Score=21.08 Aligned_cols=33 Identities=18% Similarity=0.403 Sum_probs=25.3
Q ss_pred CeEEEEEEEEecCCCCeeEEEe-eeeceeeecCCcc
Q 024857 89 GDLMLTSRIRNTNTDGKSFAFT-FAYHTYFAVSDIS 123 (261)
Q Consensus 89 ~~L~i~~~v~N~n~~~~~~pf~-~g~HpYF~v~~~~ 123 (261)
+.+.+.++|+|+ +..+.+.. +-++=||..++..
T Consensus 13 n~i~~~~~i~Nt--g~~~i~Ls~l~iRYyft~d~~~ 46 (86)
T PF00942_consen 13 NSIEPKFKIKNT--GWPAIDLSDLKIRYYFTIDEVS 46 (86)
T ss_dssp SEEEEEEEEEET--SSS-EEGGGEEEEEEEE-SSCC
T ss_pred CEEEEEEEEEEC--CCCCEEcCCEEEEEEEecCCCc
Confidence 678899999997 88877776 8889999887643
No 45
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=29.35 E-value=2.1e+02 Score=21.71 Aligned_cols=34 Identities=24% Similarity=0.301 Sum_probs=27.7
Q ss_pred EEcCCCeEEEEEEEEecCCCCeeEEEeeeeceeeec
Q 024857 84 TLGPGGDLMLTSRIRNTNTDGKSFAFTFAYHTYFAV 119 (261)
Q Consensus 84 ~L~~~~~L~i~~~v~N~n~~~~~~pf~~g~HpYF~v 119 (261)
.+.++..-.+++.|+|. +++++-|.+..++...-
T Consensus 22 ~~~P~q~~~l~v~i~N~--s~~~~tv~v~~~~A~Tn 55 (121)
T PF06030_consen 22 KVKPGQKQTLEVRITNN--SDKEITVKVSANTATTN 55 (121)
T ss_pred EeCCCCEEEEEEEEEeC--CCCCEEEEEEEeeeEec
Confidence 34555678888999998 99999999999988754
No 46
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=28.71 E-value=60 Score=22.17 Aligned_cols=17 Identities=24% Similarity=0.266 Sum_probs=12.3
Q ss_pred EeCCCCEEEEEEEEEEe
Q 024857 227 ILKPGEEWRGRQEISAV 243 (261)
Q Consensus 227 ~L~PGe~~~~~~~i~~~ 243 (261)
.|+||++.+..+.+++-
T Consensus 45 ~l~pG~s~~~~~~V~vp 61 (78)
T PF10633_consen 45 SLPPGESVTVTFTVTVP 61 (78)
T ss_dssp -B-TTSEEEEEEEEEE-
T ss_pred cCCCCCEEEEEEEEECC
Confidence 79999999988888763
No 47
>PF00207 A2M: Alpha-2-macroglobulin family; InterPro: IPR001599 This entry contains serum complement C3 and C4 precursors and alpha-macrogrobulins. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0004866 endopeptidase inhibitor activity; PDB: 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 2PN5_A 3FRP_G 3HRZ_B ....
Probab=28.43 E-value=1.6e+02 Score=20.72 Aligned_cols=36 Identities=19% Similarity=0.267 Sum_probs=20.0
Q ss_pred CcceEEEEEEEEcCCCeEEEEEEEEecCCCCeeEEEee
Q 024857 74 PHRYEFRLRITLGPGGDLMLTSRIRNTNTDGKSFAFTF 111 (261)
Q Consensus 74 P~~f~l~~ty~L~~~~~L~i~~~v~N~n~~~~~~pf~~ 111 (261)
|+-.++.+=+.|..++.+.+.++|.|. .++.+.+.+
T Consensus 55 p~~i~~~lP~~l~~GD~~~i~v~v~N~--~~~~~~v~V 90 (92)
T PF00207_consen 55 PFFIQLNLPRSLRRGDQIQIPVTVFNY--TDKDQEVTV 90 (92)
T ss_dssp SEEEEEE--SEEETTSEEEEEEEEEE---SSS-EEEEE
T ss_pred eEEEEcCCCcEEecCCEEEEEEEEEeC--CCCCEEEEE
Confidence 555566666666655677777777776 666555443
No 48
>PF14849 YidC_periplas: YidC periplasmic domain; PDB: 3BS6_B 3BLC_B.
Probab=28.21 E-value=2.9e+02 Score=23.51 Aligned_cols=63 Identities=10% Similarity=0.132 Sum_probs=29.5
Q ss_pred ecCCcEEecCCCCCCCCCCCceEEEEEecCChhhhccCCcceEEEEEEEEcCC-CeEEEEEEEEecCCCCeeEEE
Q 024857 36 RSRVWSIDPDPPPFSANSSSQACVDLILKHSEEEVKIWPHRYEFRLRITLGPG-GDLMLTSRIRNTNTDGKSFAF 109 (261)
Q Consensus 36 r~~~W~v~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~ty~L~~~-~~L~i~~~v~N~n~~~~~~pf 109 (261)
.+..|++......+ ....+..+++|+....+ .+.++.+|+|.++ =.+.++++++|. +..+...
T Consensus 68 ~~~~f~~~~~~~~l-~~~~~~~~vtf~~~~~~--------g~~i~k~ytf~~~~Y~~~~~i~~~n~--~~~~~~~ 131 (270)
T PF14849_consen 68 NDLYFSVSQKSYTL-KEGGDSQSVTFTAQLGN--------GLTITKTYTFKPDSYLVDLEISVTNL--SDQPVSL 131 (270)
T ss_dssp S--B-B-S-SEEE---TT-SEEEEEEEEE-TT--------S-EEEEEEEEETT--EEEEEEEEE----SSS-EEE
T ss_pred ccceEEEcCCceee-ccCCCceEEEEEEECCC--------CEEEEEEEEEcCCcEEEEEEEEEECC--CCCcccc
Confidence 45668776531000 00124567777776421 2689999999852 246666666666 7665554
No 49
>PF14100 PmoA: Methane oxygenase PmoA
Probab=27.06 E-value=91 Score=27.24 Aligned_cols=38 Identities=26% Similarity=0.429 Sum_probs=29.0
Q ss_pred ceEEeccCcc-CCCEEeCCCCEEEEEEEEEEeecCCCCCCCCcc
Q 024857 213 HMLCVEAACV-EKPIILKPGEEWRGRQEISAVPSSYCSGQLDPK 255 (261)
Q Consensus 213 ~~vCvEp~~~-~~~~~L~PGe~~~~~~~i~~~~~~~~~~~~~~~ 255 (261)
.++|+.|.-. .++..|+||++++.++++.+.+ |++|+.
T Consensus 224 g~~~~~p~~~~~~~~~l~~G~~l~~rYr~~v~d-----G~~~~~ 262 (271)
T PF14100_consen 224 GLFGANPAPAFDGPLTLPPGETLTLRYRVVVHD-----GALDAE 262 (271)
T ss_pred CcceecccccccCceecCCCCeEEEEEEEEEeC-----CCCCHH
Confidence 4777777643 6789999999999999988865 455543
No 50
>PF14310 Fn3-like: Fibronectin type III-like domain; PDB: 3ABZ_D 3AC0_D 2X40_A 2X41_A 2X42_A.
Probab=25.05 E-value=96 Score=20.81 Aligned_cols=21 Identities=19% Similarity=0.175 Sum_probs=15.2
Q ss_pred CEEeCCCCEEEEEEEEEEeec
Q 024857 225 PIILKPGEEWRGRQEISAVPS 245 (261)
Q Consensus 225 ~~~L~PGe~~~~~~~i~~~~~ 245 (261)
.+.|+|||+.+.++.|..+..
T Consensus 26 rv~l~pGes~~v~~~l~~~~l 46 (71)
T PF14310_consen 26 RVSLAPGESKTVSFTLPPEDL 46 (71)
T ss_dssp EEEE-TT-EEEEEEEEEHHHH
T ss_pred EEEECCCCEEEEEEEECHHHE
Confidence 478999999999999875444
No 51
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=23.88 E-value=28 Score=24.56 Aligned_cols=21 Identities=24% Similarity=0.604 Sum_probs=16.5
Q ss_pred ceEEeccCccCCCEEeCCCCEEE
Q 024857 213 HMLCVEAACVEKPIILKPGEEWR 235 (261)
Q Consensus 213 ~~vCvEp~~~~~~~~L~PGe~~~ 235 (261)
.|-|+++.+. .+.|.|||+|+
T Consensus 59 yF~tLp~nT~--l~~L~~gq~W~ 79 (80)
T cd06536 59 YFLCLPPNTK--FVLLAENEKWA 79 (80)
T ss_pred HHhhCCCCcE--EEEECCCCccC
Confidence 4778887663 68999999985
No 52
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=23.31 E-value=32 Score=24.21 Aligned_cols=21 Identities=24% Similarity=0.639 Sum_probs=16.8
Q ss_pred ceEEeccCccCCCEEeCCCCEEE
Q 024857 213 HMLCVEAACVEKPIILKPGEEWR 235 (261)
Q Consensus 213 ~~vCvEp~~~~~~~~L~PGe~~~ 235 (261)
.|-|+++.+. .+.|.|||.|+
T Consensus 57 YF~tLp~nT~--l~~l~~gq~W~ 77 (78)
T cd01615 57 YFQTLPDNTV--LMLLEPGQKWT 77 (78)
T ss_pred HHhcCCCCcE--EEEECCCCCcC
Confidence 5778888764 68999999986
No 53
>PRK11827 hypothetical protein; Provisional
Probab=23.03 E-value=32 Score=22.90 Aligned_cols=13 Identities=8% Similarity=-0.291 Sum_probs=10.5
Q ss_pred CCCCCcceEEccc
Q 024857 10 ARPLLRIQSQFVE 22 (261)
Q Consensus 10 ~~~rgG~PvlFP~ 22 (261)
=+||-||||+.+-
T Consensus 36 YPI~dgIPVlL~d 48 (60)
T PRK11827 36 FPLRDGIPVLLET 48 (60)
T ss_pred ccccCCccccCHH
Confidence 3689999999874
No 54
>KOG3150 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.54 E-value=53 Score=26.31 Aligned_cols=19 Identities=21% Similarity=0.614 Sum_probs=15.4
Q ss_pred CcEEEEEECCCCcEEEeCC
Q 024857 177 KRTFVLRKDGLPDAVVWNP 195 (261)
Q Consensus 177 ~~~i~i~~~~~~~~vvw~p 195 (261)
.+.|..+.+.||+.+||+|
T Consensus 16 ~~~id~k~~rfPyCIVWTP 34 (182)
T KOG3150|consen 16 DLEIDPKRSRFPYCIVWTP 34 (182)
T ss_pred ccccCcccCCCCeEEEecC
Confidence 3456677778999999998
Done!