BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024858
(261 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 35.4 bits (80), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 13/126 (10%)
Query: 69 LIDLYKKCGKVEEQIEMLKRKLRL-------IYQ-GEAF--NGKPTKTARSHGKKFQVSV 118
L + Y K G +E IE ++ L L Y G A+ G + + K ++
Sbjct: 7 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 66
Query: 119 RQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKAC-NLGLCLIKRTRYNEARS 177
R ++ NL AY ++ ++ A YQKA +DP + +A NLG K+ Y+EA
Sbjct: 67 R--SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIE 124
Query: 178 VLEDVL 183
+ L
Sbjct: 125 YYQKAL 130
Score = 30.4 bits (67), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 128 NLAWAYMQKTNFMAAEVVYQKAQMIDPDANKAC-NLGLCLIKRTRYNEARSVLEDVL 183
NL AY ++ ++ A YQKA +DP + +A NLG K+ Y+EA + L
Sbjct: 6 NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 62
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 46/116 (39%), Gaps = 27/116 (23%)
Query: 69 LIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGN 128
L + Y K G +E IE ++ L L P E LGN
Sbjct: 15 LGNAYYKQGDYDEAIEYYQKALEL---------DPNNA--------------EAWYNLGN 51
Query: 129 LAWAYMQKTNFMAAEVVYQKAQMIDPDANKAC-NLGLCLIKRTRYNEARSVLEDVL 183
AY ++ ++ A YQKA +DP+ +A NLG K+ Y+EA + L
Sbjct: 52 ---AYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 104
Score = 30.8 bits (68), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 128 NLAWAYMQKTNFMAAEVVYQKAQMIDPDANKAC-NLGLCLIKRTRYNEARSVLEDVL 183
NL AY ++ ++ A YQKA +DP+ +A NLG K+ Y+EA + L
Sbjct: 14 NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 30.8 bits (68), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 128 NLAWAYMQKTNFMAAEVVYQKAQMIDPDANKAC-NLGLCLIKRTRYNEARSVLEDVL 183
NL AY ++ ++ A YQKA +DP+ +A NLG K+ Y+EA + L
Sbjct: 14 NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 30.8 bits (68), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 128 NLAWAYMQKTNFMAAEVVYQKAQMIDPDANKAC-NLGLCLIKRTRYNEARSVLEDVL 183
NL AY ++ ++ A YQKA +DP + +A NLG K+ Y+EA + L
Sbjct: 8 NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 64
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 121 ETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDP-DANKACNLGLCLIKRTRYNEARSVL 179
E + LGN AY ++ ++ A YQKA +DP +A+ NLG K+ Y +A
Sbjct: 10 EAWKNLGN---AYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYY 66
Query: 180 EDVL 183
+ L
Sbjct: 67 QKAL 70
>pdb|4EGL|A Chain A, Crystal Structure Of Two Tandem Rna Recognition Motifs Of
Human Antigen R
Length = 177
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Query: 4 LVQKDPEAAIVLFWKAINAGDRVDSALK-DMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQ 62
+ QKD E F + IN+ VD V + D+ EA EAI SF G S
Sbjct: 100 MTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSS 159
Query: 63 ESL 65
E +
Sbjct: 160 EPI 162
>pdb|4ED5|A Chain A, Crystal Structure Of The Two N-Terminal Rrm Domains Of Hur
Complexed With Rna
pdb|4ED5|B Chain B, Crystal Structure Of The Two N-Terminal Rrm Domains Of Hur
Complexed With Rna
Length = 177
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Query: 4 LVQKDPEAAIVLFWKAINAGDRVDSALK-DMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQ 62
+ QKD E F + IN+ VD V + D+ EA EAI SF G S
Sbjct: 100 MTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSS 159
Query: 63 ESL 65
E +
Sbjct: 160 EPI 162
>pdb|2ZGT|A Chain A, Crystal Structure Of Agrocybe Aegerita Lectin Aal Mutant
F93g
pdb|2ZGT|B Chain B, Crystal Structure Of Agrocybe Aegerita Lectin Aal Mutant
F93g
Length = 167
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 8/58 (13%)
Query: 95 QGEAFNGKPTKTARSHGKKFQVSVRQET--------SRLLGNLAWAYMQKTNFMAAEV 144
QG +GK T HG K+QV + ++T S L +L++ ++T+ + V
Sbjct: 93 QGAGIDGKAMVTVFDHGDKYQVVINEKTVIQYTKQISGLTSSLSYNATEETSIFSTVV 150
>pdb|1T8P|A Chain A, Crystal Structure Of Human Erythrocyte 2,3-
Bisphosphoglycerate Mutase
pdb|1T8P|B Chain B, Crystal Structure Of Human Erythrocyte 2,3-
Bisphosphoglycerate Mutase
pdb|2A9J|A Chain A, Human Bisphosphoglycerate Mutase Complexed With 3-
Phosphoglycerate (17 Days)
pdb|2A9J|B Chain B, Human Bisphosphoglycerate Mutase Complexed With 3-
Phosphoglycerate (17 Days)
pdb|2F90|A Chain A, Crystal Structure Of Bisphosphoglycerate Mutase In Complex
With 3-Phosphoglycerate And Alf4-
pdb|2F90|B Chain B, Crystal Structure Of Bisphosphoglycerate Mutase In Complex
With 3-Phosphoglycerate And Alf4-
pdb|2H4X|A Chain A, Human Bisphosphoglycerate Mutase Complex With 3-
Phosphoglycerate With Crystal Growth 90 Days
pdb|2H4X|B Chain B, Human Bisphosphoglycerate Mutase Complex With 3-
Phosphoglycerate With Crystal Growth 90 Days
pdb|2H4Z|A Chain A, Human Bisphosphoglycerate Mutase Complexed With 2,3-
Bisphosphoglycerate
pdb|2H4Z|B Chain B, Human Bisphosphoglycerate Mutase Complexed With 2,3-
Bisphosphoglycerate
pdb|2H52|A Chain A, Crystal Structure Of Human Bisphosphoglycerate Mutase
Complex With 3-Phosphoglycerate (18 Days)
pdb|2H52|B Chain B, Crystal Structure Of Human Bisphosphoglycerate Mutase
Complex With 3-Phosphoglycerate (18 Days)
pdb|3NFY|A Chain A, The Structure Of Human Bisphosphoglycerate Mutase To 1.94a
pdb|3NFY|B Chain B, The Structure Of Human Bisphosphoglycerate Mutase To 1.94a
Length = 267
Score = 27.7 bits (60), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 218 LLGLNLEDEFVNGLEEMVRVWAPSRSKRLPIFEEISSFRDRI 259
L+GLN E +N EE VR+W S + P EE + I
Sbjct: 95 LIGLNREQMALNHGEEQVRLWRRSYNVTPPPIEESHPYYQEI 136
>pdb|2HHJ|A Chain A, Human Bisphosphoglycerate Mutase Complexed With 2,3-
Bisphosphoglycerate (15 Days)
pdb|2HHJ|B Chain B, Human Bisphosphoglycerate Mutase Complexed With 2,3-
Bisphosphoglycerate (15 Days)
Length = 267
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 218 LLGLNLEDEFVNGLEEMVRVWAPSRSKRLPIFEEISSFRDRI 259
L+GLN E +N EE VR+W S + P EE + I
Sbjct: 95 LIGLNREQMALNHGEEQVRLWRRSYNVTPPPIEESHPYYQEI 136
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,852,511
Number of Sequences: 62578
Number of extensions: 251649
Number of successful extensions: 673
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 659
Number of HSP's gapped (non-prelim): 33
length of query: 261
length of database: 14,973,337
effective HSP length: 97
effective length of query: 164
effective length of database: 8,903,271
effective search space: 1460136444
effective search space used: 1460136444
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)