BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024858
(261 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SUF9|PP305_ARATH Pentatricopeptide repeat-containing protein At4g08210
OS=Arabidopsis thaliana GN=PCMP-E100 PE=3 SV=1
Length = 686
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 10/90 (11%)
Query: 51 KSFRGLCSKQSQES---LDNVLIDLYKKCGKVEEQI----EMLKRKL---RLIYQGEAFN 100
K GLC K+ ES L+D+Y KCG+++ + ML+R + I G N
Sbjct: 463 KQIHGLCIKKGYESEPVTATALVDMYVKCGEIDNGVVLFDGMLERDVVSWTGIIVGFGQN 522
Query: 101 GKPTKTARSHGKKFQVSVRQETSRLLGNLA 130
G+ + R K + + LG L+
Sbjct: 523 GRVEEAFRYFHKMINIGIEPNKVTFLGLLS 552
>sp|Q6YZI0|SPY_ORYSJ Probable UDP-N-acetylglucosamine--peptide
N-acetylglucosaminyltransferase SPINDLY OS=Oryza sativa
subsp. japonica GN=SPY PE=3 SV=1
Length = 927
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 61/150 (40%), Gaps = 28/150 (18%)
Query: 10 EAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVL 69
E AIV + A++ R A ++ V+ K D ++A+E + + SQ SL+N+
Sbjct: 303 EMAIVFYELALHFNPRCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ-SLNNLG 361
Query: 70 IDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNL 129
+ +Y GK++ M+++ + F S E LG L
Sbjct: 362 V-VYTVQGKMDAASSMIQKAI-----------------------FANSTYAEAYNNLGVL 397
Query: 130 AWAYMQKTNFMAAEVVYQKAQMIDPDANKA 159
Y + +A Y+K IDPD+ A
Sbjct: 398 ---YRDAGSITSAVQAYEKCLQIDPDSRNA 424
>sp|Q9LRV9|PP228_ARATH Pentatricopeptide repeat-containing protein At3g13880
OS=Arabidopsis thaliana GN=PCMP-E89 PE=2 SV=1
Length = 748
Score = 33.1 bits (74), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 62 QESLDNVLIDLYKKCGKVEEQIEMLKR 88
Q L NVLID+Y KCGK+++ + + R
Sbjct: 182 QVFLINVLIDMYSKCGKLDQAMSLFDR 208
>sp|A6T4W3|MTNN_KLEP7 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase
OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC
700721 / MGH 78578) GN=mtnN PE=1 SV=1
Length = 232
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 70/166 (42%), Gaps = 30/166 (18%)
Query: 77 GKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQK 136
G +EE++ +L+ K+ Q G T + HG V V S + G +A A
Sbjct: 7 GAMEEEVTLLRDKIEN-RQTITIGGSEIYTGQLHG----VDVALLKSGI-GKVAAA---- 56
Query: 137 TNFMAAEVVYQKAQMIDPDA--NKACNLGLC---------LIKRTRYNEARSVLEDVLYG 185
M A ++ ++ Q PD N GL + RY++A YG
Sbjct: 57 ---MGATLLLERCQ---PDVIINTGSAGGLASTLKVGDIVVSDEARYHDADVTAFGYEYG 110
Query: 186 RIPGCEDGRTRKRAEELLLELESKQPPPDLSDLLGLNLE-DEFVNG 230
++PGC G K E+L+ ES DL+ + GL + D F+NG
Sbjct: 111 QLPGCPAG--FKADEKLVAAAESCIKALDLNAVRGLIVSGDAFING 154
>sp|Q6FNU6|PPID_CANGA Peptidyl-prolyl cis-trans isomerase D OS=Candida glabrata (strain
ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=CPR6 PE=3 SV=1
Length = 371
Score = 32.7 bits (73), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 23 GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGK 78
GD + +LKD A V L + E I+AI++ + + +KQ +E V + YKKC K
Sbjct: 194 GDNYEESLKDDAKV--DLKKVETVIKAIETVKDIGTKQFKEQNYEVALAKYKKCDK 247
>sp|O67066|FTSY_AQUAE Signal recognition particle receptor FtsY OS=Aquifex aeolicus
(strain VF5) GN=ftsY PE=3 SV=1
Length = 461
Score = 32.3 bits (72), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 37/63 (58%)
Query: 29 ALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKR 88
+L ++A + QL++ ++A+E + L + +E L+N + L K+ G +EE+ E +
Sbjct: 107 SLYNVAKIYHQLEKPDKALEYAQRAEKLVPYEKKEELENFITQLKKELGLIEEKKESILD 166
Query: 89 KLR 91
KLR
Sbjct: 167 KLR 169
>sp|P0C898|PP232_ARATH Putative pentatricopeptide repeat-containing protein At3g15130
OS=Arabidopsis thaliana GN=PCMP-H86 PE=3 SV=1
Length = 689
Score = 32.0 bits (71), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 21/96 (21%)
Query: 14 VLFWKAINAGDRVDSALKDMAVVMKQLDRSE------------------EAIEAIKSFRG 55
V+ W A+ +G ++ LK + ++ R A+E G
Sbjct: 72 VVSWSALMSGHVLNGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKACGLLNALEKGLQIHG 131
Query: 56 LCSKQSQESL---DNVLIDLYKKCGKVEEQIEMLKR 88
C K E + N L+D+Y KCG++ E ++ +R
Sbjct: 132 FCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRR 167
>sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520
OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1
Length = 620
Score = 31.6 bits (70), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 65 LDNVLIDLYKKCGKVEEQIEMLK 87
L VLID+Y KCG++EE +E+ K
Sbjct: 284 LGCVLIDMYAKCGEMEEALEVFK 306
>sp|Q5WZ02|PDXH_LEGPL Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Legionella
pneumophila (strain Lens) GN=pdxH PE=3 SV=1
Length = 215
Score = 31.2 bits (69), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 5 VQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQES 64
+QK+P AA+ +W + RV +K ++ S I++ F + S QSQE
Sbjct: 90 IQKNPYAALNFYWPQMARQVRVRGRVKKISSEQSDAYFSSRPIKS--QFSAIVSPQSQEI 147
Query: 65 LDNVLID 71
LD + ++
Sbjct: 148 LDRISLE 154
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,965,382
Number of Sequences: 539616
Number of extensions: 3619675
Number of successful extensions: 11652
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 11634
Number of HSP's gapped (non-prelim): 44
length of query: 261
length of database: 191,569,459
effective HSP length: 115
effective length of query: 146
effective length of database: 129,513,619
effective search space: 18908988374
effective search space used: 18908988374
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)