Query 024858
Match_columns 261
No_of_seqs 218 out of 1315
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 07:56:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024858.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024858hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4626 O-linked N-acetylgluco 99.9 2E-23 4.3E-28 190.3 18.8 176 7-185 266-451 (966)
2 KOG4626 O-linked N-acetylgluco 99.9 7.8E-24 1.7E-28 192.8 15.1 179 5-185 196-383 (966)
3 TIGR00990 3a0801s09 mitochondr 99.8 2.8E-19 6.1E-24 171.5 24.4 227 6-235 307-569 (615)
4 PRK12370 invasion protein regu 99.8 3.1E-18 6.7E-23 162.3 19.9 176 6-184 274-469 (553)
5 PRK15174 Vi polysaccharide exp 99.8 1.2E-17 2.5E-22 161.1 24.0 236 2-239 85-383 (656)
6 TIGR02521 type_IV_pilW type IV 99.8 2.2E-17 4.9E-22 136.7 22.2 157 3-185 41-198 (234)
7 COG3063 PilF Tfp pilus assembl 99.8 1.8E-17 3.9E-22 136.0 20.7 157 3-185 45-202 (250)
8 TIGR00990 3a0801s09 mitochondr 99.8 1.6E-17 3.5E-22 159.3 22.4 192 13-207 277-494 (615)
9 PRK09782 bacteriophage N4 rece 99.8 2.9E-17 6.3E-22 163.1 23.0 179 4-186 520-707 (987)
10 PRK15174 Vi polysaccharide exp 99.8 4.3E-17 9.4E-22 157.2 23.3 197 4-205 188-399 (656)
11 PRK12370 invasion protein regu 99.8 2.7E-17 5.9E-22 155.9 21.1 175 6-185 317-502 (553)
12 PRK15359 type III secretion sy 99.8 1.1E-17 2.4E-22 131.5 14.4 127 12-169 12-139 (144)
13 PRK09782 bacteriophage N4 rece 99.8 1.6E-16 3.4E-21 157.9 24.8 230 5-239 488-739 (987)
14 PRK11788 tetratricopeptide rep 99.8 4.4E-16 9.5E-21 140.8 23.8 233 3-236 45-310 (389)
15 PRK11447 cellulose synthase su 99.8 2.4E-16 5.1E-21 160.8 24.5 182 3-185 279-524 (1157)
16 PRK11189 lipoprotein NlpI; Pro 99.7 1.3E-16 2.9E-21 139.9 18.5 180 2-186 73-266 (296)
17 KOG1125 TPR repeat-containing 99.7 4.9E-17 1.1E-21 147.9 15.2 182 2-185 294-493 (579)
18 TIGR02917 PEP_TPR_lipo putativ 99.7 1.6E-15 3.5E-20 148.6 25.1 180 4-185 476-664 (899)
19 TIGR02917 PEP_TPR_lipo putativ 99.7 4.8E-16 1E-20 152.3 20.4 178 4-185 680-866 (899)
20 KOG1126 DNA-binding cell divis 99.7 1E-16 2.2E-21 147.7 13.5 179 17-223 411-601 (638)
21 KOG1126 DNA-binding cell divis 99.7 1.1E-16 2.4E-21 147.5 13.4 154 4-185 432-586 (638)
22 KOG1155 Anaphase-promoting com 99.7 6.5E-16 1.4E-20 137.5 17.7 154 4-185 341-495 (559)
23 PRK11788 tetratricopeptide rep 99.7 3.3E-15 7.2E-20 135.0 22.4 207 3-212 79-314 (389)
24 PRK15359 type III secretion sy 99.7 8.1E-16 1.8E-20 120.9 15.7 109 47-186 13-122 (144)
25 PRK11189 lipoprotein NlpI; Pro 99.7 2.2E-15 4.8E-20 132.2 19.4 150 7-185 40-194 (296)
26 TIGR02521 type_IV_pilW type IV 99.7 3.9E-15 8.5E-20 123.1 19.6 158 2-185 74-232 (234)
27 PRK11447 cellulose synthase su 99.7 6.1E-15 1.3E-19 150.6 25.0 231 4-236 472-739 (1157)
28 PF13429 TPR_15: Tetratricopep 99.7 5.6E-16 1.2E-20 134.6 12.9 180 4-185 88-277 (280)
29 KOG1155 Anaphase-promoting com 99.7 5.8E-15 1.3E-19 131.5 18.8 154 4-185 273-461 (559)
30 PRK10370 formate-dependent nit 99.7 5.2E-15 1.1E-19 122.3 16.5 149 3-190 26-178 (198)
31 PRK15179 Vi polysaccharide bio 99.7 1.3E-14 2.9E-19 139.5 21.6 137 21-185 80-217 (694)
32 PRK10370 formate-dependent nit 99.7 5.9E-15 1.3E-19 122.0 16.0 125 6-158 52-179 (198)
33 KOG1840 Kinesin light chain [C 99.7 1.3E-14 2.8E-19 134.1 19.9 165 3-185 209-396 (508)
34 PRK10049 pgaA outer membrane p 99.7 1.4E-14 3.1E-19 142.2 21.3 182 3-185 247-456 (765)
35 COG3063 PilF Tfp pilus assembl 99.6 2.5E-14 5.4E-19 117.6 17.5 132 27-187 35-170 (250)
36 TIGR03302 OM_YfiO outer membra 99.6 2E-14 4.4E-19 121.4 17.4 174 3-185 43-232 (235)
37 PRK10049 pgaA outer membrane p 99.6 8E-14 1.7E-18 136.9 19.5 153 3-184 25-178 (765)
38 TIGR02552 LcrH_SycD type III s 99.6 4.8E-14 1E-18 108.8 13.7 116 15-158 5-120 (135)
39 TIGR00540 hemY_coli hemY prote 99.6 1.6E-13 3.5E-18 125.6 18.6 184 2-185 162-399 (409)
40 PRK15363 pathogenicity island 99.6 1.7E-13 3.7E-18 107.5 15.3 117 65-207 37-154 (157)
41 PF13429 TPR_15: Tetratricopep 99.6 5E-14 1.1E-18 122.4 13.5 202 5-234 56-271 (280)
42 PRK14574 hmsH outer membrane p 99.6 2.1E-13 4.5E-18 133.5 19.1 157 1-185 42-198 (822)
43 PRK10747 putative protoheme IX 99.6 3.7E-13 8.1E-18 122.8 18.8 182 3-185 163-390 (398)
44 KOG1173 Anaphase-promoting com 99.6 2.2E-13 4.9E-18 123.9 16.8 194 4-206 323-532 (611)
45 TIGR03302 OM_YfiO outer membra 99.5 1E-12 2.2E-17 111.0 19.9 140 23-185 29-195 (235)
46 TIGR02552 LcrH_SycD type III s 99.5 3.2E-13 6.8E-18 104.3 15.0 110 48-185 4-114 (135)
47 PLN02789 farnesyltranstransfer 99.5 1.2E-12 2.5E-17 115.8 19.8 156 3-186 47-213 (320)
48 COG5010 TadD Flp pilus assembl 99.5 5.1E-13 1.1E-17 111.7 15.8 145 12-185 52-197 (257)
49 KOG0547 Translocase of outer m 99.5 4.1E-13 8.9E-18 120.5 15.0 160 3-185 404-566 (606)
50 KOG1174 Anaphase-promoting com 99.5 3.3E-12 7.1E-17 112.8 20.4 205 3-216 310-524 (564)
51 COG5010 TadD Flp pilus assembl 99.5 3.6E-12 7.7E-17 106.7 19.0 151 5-183 78-229 (257)
52 KOG0553 TPR repeat-containing 99.5 4.8E-13 1E-17 113.9 13.1 130 27-184 81-214 (304)
53 PRK15179 Vi polysaccharide bio 99.5 1.1E-12 2.3E-17 126.4 17.1 128 3-158 96-223 (694)
54 cd05804 StaR_like StaR_like; a 99.5 1.9E-12 4E-17 115.7 16.6 153 4-185 54-215 (355)
55 KOG0547 Translocase of outer m 99.5 2.5E-12 5.3E-17 115.5 16.6 156 2-185 335-491 (606)
56 KOG1840 Kinesin light chain [C 99.5 3.8E-12 8.2E-17 117.9 17.6 165 2-185 250-438 (508)
57 PLN02789 farnesyltranstransfer 99.4 1E-11 2.2E-16 109.9 18.5 165 8-207 87-265 (320)
58 KOG2003 TPR repeat-containing 99.4 5.4E-11 1.2E-15 106.4 19.8 180 4-185 501-689 (840)
59 PRK15363 pathogenicity island 99.4 1.2E-11 2.6E-16 97.1 13.9 109 21-157 28-137 (157)
60 KOG1125 TPR repeat-containing 99.4 3.6E-12 7.9E-17 116.4 12.5 115 13-155 414-530 (579)
61 TIGR00540 hemY_coli hemY prote 99.4 1.4E-10 3E-15 106.3 22.7 221 2-223 93-345 (409)
62 KOG1173 Anaphase-promoting com 99.4 6.4E-12 1.4E-16 114.6 12.9 137 4-166 391-533 (611)
63 PRK10747 putative protoheme IX 99.4 1.9E-10 4.1E-15 105.0 22.8 89 3-93 94-183 (398)
64 cd05804 StaR_like StaR_like; a 99.4 1.2E-10 2.5E-15 104.1 21.1 186 22-207 1-213 (355)
65 KOG0553 TPR repeat-containing 99.3 1.5E-11 3.3E-16 104.8 12.3 109 4-140 92-200 (304)
66 PLN03088 SGT1, suppressor of 99.3 3.7E-11 8E-16 108.0 14.8 112 30-169 5-117 (356)
67 COG4783 Putative Zn-dependent 99.3 1.3E-10 2.9E-15 104.6 18.2 135 23-185 302-437 (484)
68 CHL00033 ycf3 photosystem I as 99.3 7.2E-11 1.6E-15 94.9 15.1 128 5-158 11-155 (168)
69 KOG2002 TPR-containing nuclear 99.3 1.3E-11 2.8E-16 118.4 11.7 154 6-185 625-798 (1018)
70 KOG0548 Molecular co-chaperone 99.3 5E-10 1.1E-14 101.8 20.4 179 4-185 235-421 (539)
71 COG4783 Putative Zn-dependent 99.3 3.3E-10 7.1E-15 102.2 19.1 146 3-192 316-461 (484)
72 KOG0624 dsRNA-activated protei 99.3 4.1E-10 8.8E-15 97.8 18.4 185 4-193 49-257 (504)
73 COG2956 Predicted N-acetylgluc 99.3 1.1E-09 2.3E-14 94.5 20.0 181 4-185 46-278 (389)
74 CHL00033 ycf3 photosystem I as 99.3 2.5E-10 5.5E-15 91.7 15.3 118 43-183 15-140 (168)
75 KOG1129 TPR repeat-containing 99.3 4E-10 8.7E-15 97.3 17.2 178 3-185 233-424 (478)
76 PF13414 TPR_11: TPR repeat; P 99.3 2.4E-11 5.2E-16 82.8 7.6 64 122-185 2-67 (69)
77 PRK02603 photosystem I assembl 99.3 4.4E-10 9.5E-15 90.7 16.0 99 64-185 36-149 (172)
78 KOG1129 TPR repeat-containing 99.3 2.2E-11 4.7E-16 105.0 8.6 180 4-185 267-458 (478)
79 TIGR02795 tol_pal_ybgF tol-pal 99.3 2.4E-10 5.1E-15 85.5 13.3 108 28-158 3-111 (119)
80 PRK02603 photosystem I assembl 99.2 2.7E-10 5.8E-15 92.0 14.4 108 24-157 32-154 (172)
81 PLN03088 SGT1, suppressor of 99.2 1.5E-10 3.2E-15 104.2 14.2 91 69-185 8-99 (356)
82 PRK14720 transcript cleavage f 99.2 1.7E-10 3.8E-15 112.6 15.6 160 14-185 17-178 (906)
83 COG2956 Predicted N-acetylgluc 99.2 3.3E-09 7.2E-14 91.4 20.8 151 7-185 155-311 (389)
84 PRK14574 hmsH outer membrane p 99.2 1.3E-09 2.9E-14 107.0 20.8 150 3-181 78-228 (822)
85 KOG2076 RNA polymerase III tra 99.2 2.4E-09 5.2E-14 102.3 19.7 154 4-185 150-309 (895)
86 KOG3060 Uncharacterized conser 99.2 2.1E-09 4.6E-14 89.8 17.0 177 8-186 27-221 (289)
87 PRK14720 transcript cleavage f 99.2 1.8E-09 3.9E-14 105.7 19.0 140 4-185 42-198 (906)
88 KOG2002 TPR-containing nuclear 99.2 1.7E-09 3.6E-14 104.1 18.1 181 4-186 175-372 (1018)
89 PF09976 TPR_21: Tetratricopep 99.2 2.5E-09 5.5E-14 83.9 16.1 121 39-183 23-145 (145)
90 cd00189 TPR Tetratricopeptide 99.2 5.8E-10 1.3E-14 78.0 11.2 61 30-92 3-63 (100)
91 KOG0550 Molecular chaperone (D 99.2 5.8E-10 1.3E-14 98.7 13.3 160 4-185 180-350 (486)
92 PF12895 Apc3: Anaphase-promot 99.2 1.7E-10 3.7E-15 81.9 8.2 83 75-182 1-84 (84)
93 PF09976 TPR_21: Tetratricopep 99.2 1.7E-09 3.7E-14 84.9 14.4 120 4-150 22-145 (145)
94 PF13432 TPR_16: Tetratricopep 99.1 2.6E-10 5.7E-15 76.8 8.3 63 69-157 3-65 (65)
95 KOG0548 Molecular co-chaperone 99.1 2.2E-09 4.7E-14 97.7 16.5 144 6-185 311-455 (539)
96 PRK10153 DNA-binding transcrip 99.1 6.7E-10 1.5E-14 104.2 13.5 140 21-187 331-484 (517)
97 KOG2076 RNA polymerase III tra 99.1 5.9E-09 1.3E-13 99.7 18.5 133 27-187 139-272 (895)
98 cd00189 TPR Tetratricopeptide 99.1 1.4E-09 3.1E-14 76.0 11.1 93 67-185 4-97 (100)
99 COG4235 Cytochrome c biogenesi 99.1 6.4E-09 1.4E-13 89.2 16.9 120 43-190 138-261 (287)
100 TIGR02795 tol_pal_ybgF tol-pal 99.1 3E-09 6.5E-14 79.5 13.2 97 66-185 5-105 (119)
101 PF12688 TPR_5: Tetratrico pep 99.1 5.7E-09 1.2E-13 79.1 14.1 110 66-204 4-117 (120)
102 KOG2003 TPR repeat-containing 99.1 4.5E-09 9.8E-14 94.3 15.1 201 7-211 470-691 (840)
103 KOG1127 TPR repeat-containing 99.1 3.1E-09 6.7E-14 102.5 14.9 178 6-185 471-659 (1238)
104 PF12895 Apc3: Anaphase-promot 99.1 6.6E-10 1.4E-14 78.9 8.0 81 6-89 2-84 (84)
105 PF13432 TPR_16: Tetratricopep 99.1 5.2E-10 1.1E-14 75.3 7.1 59 127-185 1-60 (65)
106 PRK15331 chaperone protein Sic 99.1 8.6E-09 1.9E-13 81.5 14.8 112 69-210 43-155 (165)
107 COG4235 Cytochrome c biogenesi 99.1 7.3E-09 1.6E-13 88.9 15.2 125 7-159 136-263 (287)
108 PLN03218 maturation of RBCL 1; 99.1 5.2E-08 1.1E-12 98.3 23.7 203 4-209 553-783 (1060)
109 PRK10803 tol-pal system protei 99.1 5.4E-09 1.2E-13 90.0 14.4 62 124-185 181-246 (263)
110 PRK10866 outer membrane biogen 99.0 3.8E-08 8.3E-13 83.9 18.9 172 3-183 42-239 (243)
111 PF14938 SNAP: Soluble NSF att 99.0 3.2E-08 6.9E-13 86.3 18.9 184 5-211 47-250 (282)
112 PF13414 TPR_11: TPR repeat; P 99.0 1.8E-09 3.8E-14 73.5 8.1 67 26-94 2-69 (69)
113 PF13525 YfiO: Outer membrane 99.0 4.2E-08 9.2E-13 81.4 17.4 138 25-185 3-170 (203)
114 PF14938 SNAP: Soluble NSF att 99.0 4.6E-08 9.9E-13 85.3 18.4 135 30-185 38-184 (282)
115 PF04733 Coatomer_E: Coatomer 99.0 4.1E-09 8.8E-14 92.1 11.6 149 26-185 101-265 (290)
116 PF12569 NARP1: NMDA receptor- 99.0 1.9E-07 4.1E-12 87.5 23.3 183 1-185 12-257 (517)
117 KOG0624 dsRNA-activated protei 99.0 1.5E-08 3.3E-13 88.1 14.7 178 6-185 168-370 (504)
118 PF09295 ChAPs: ChAPs (Chs5p-A 99.0 1.6E-08 3.4E-13 91.6 15.5 118 33-181 175-293 (395)
119 KOG0495 HAT repeat protein [RN 99.0 5.5E-08 1.2E-12 90.7 18.8 152 6-186 597-749 (913)
120 PRK10153 DNA-binding transcrip 99.0 3.4E-08 7.4E-13 92.8 17.7 122 7-158 356-488 (517)
121 KOG1156 N-terminal acetyltrans 99.0 8.3E-09 1.8E-13 95.8 13.2 153 5-185 19-172 (700)
122 KOG4162 Predicted calmodulin-b 99.0 1.9E-08 4E-13 95.1 15.7 130 28-185 651-783 (799)
123 PLN03218 maturation of RBCL 1; 99.0 1.7E-07 3.7E-12 94.7 23.5 179 5-185 449-643 (1060)
124 PLN03081 pentatricopeptide (PP 99.0 2.4E-08 5.1E-13 97.5 16.9 171 4-185 371-557 (697)
125 KOG0543 FKBP-type peptidyl-pro 99.0 1.2E-08 2.6E-13 90.6 13.3 130 30-185 211-355 (397)
126 COG4700 Uncharacterized protei 99.0 6.6E-08 1.4E-12 77.7 16.1 151 8-185 71-222 (251)
127 PLN03081 pentatricopeptide (PP 99.0 3.8E-08 8.3E-13 96.1 17.5 173 4-184 270-454 (697)
128 PF13525 YfiO: Outer membrane 98.9 7.6E-08 1.6E-12 79.9 16.6 165 3-176 15-198 (203)
129 KOG1156 N-terminal acetyltrans 98.9 6.7E-08 1.5E-12 89.9 17.5 225 6-236 54-312 (700)
130 PF12688 TPR_5: Tetratrico pep 98.9 3.9E-08 8.5E-13 74.5 13.3 101 28-151 2-103 (120)
131 KOG4162 Predicted calmodulin-b 98.9 1.8E-08 3.9E-13 95.2 13.6 128 3-158 660-789 (799)
132 PRK10803 tol-pal system protei 98.9 3.7E-08 8E-13 84.9 14.6 109 27-158 142-252 (263)
133 PRK11906 transcriptional regul 98.9 5.8E-08 1.3E-12 88.1 16.0 149 8-184 273-435 (458)
134 PLN03098 LPA1 LOW PSII ACCUMUL 98.9 5.2E-09 1.1E-13 94.7 9.2 69 117-185 69-141 (453)
135 KOG1128 Uncharacterized conser 98.9 2.1E-08 4.5E-13 94.3 13.3 167 7-186 412-583 (777)
136 COG3071 HemY Uncharacterized e 98.9 1.6E-07 3.4E-12 83.1 17.9 182 3-185 163-390 (400)
137 PLN03077 Protein ECB2; Provisi 98.9 6E-08 1.3E-12 96.8 17.5 170 4-185 535-720 (857)
138 KOG1128 Uncharacterized conser 98.9 1.1E-08 2.4E-13 96.1 11.1 173 5-186 436-617 (777)
139 KOG0495 HAT repeat protein [RN 98.9 9.6E-08 2.1E-12 89.1 16.9 180 4-185 662-880 (913)
140 PRK10866 outer membrane biogen 98.9 4.6E-07 9.9E-12 77.3 19.7 137 26-185 31-204 (243)
141 PRK15331 chaperone protein Sic 98.9 4E-08 8.7E-13 77.7 12.0 129 8-165 8-146 (165)
142 KOG4340 Uncharacterized conser 98.9 4.4E-08 9.6E-13 83.9 12.6 177 4-185 21-207 (459)
143 KOG3060 Uncharacterized conser 98.9 6.5E-07 1.4E-11 75.1 18.7 129 55-186 46-184 (289)
144 KOG0550 Molecular chaperone (D 98.8 7.8E-08 1.7E-12 85.4 13.2 182 4-185 60-316 (486)
145 PF13424 TPR_12: Tetratricopep 98.8 7.7E-09 1.7E-13 72.1 5.1 65 121-185 3-75 (78)
146 KOG1174 Anaphase-promoting com 98.8 7.5E-07 1.6E-11 79.4 18.5 171 12-185 217-397 (564)
147 PF14559 TPR_19: Tetratricopep 98.8 1.8E-08 3.9E-13 68.2 6.5 53 133-185 1-54 (68)
148 COG4976 Predicted methyltransf 98.8 1.9E-08 4.1E-13 83.0 7.5 106 132-243 4-110 (287)
149 KOG2376 Signal recognition par 98.8 4.9E-07 1.1E-11 83.5 17.3 184 4-189 23-257 (652)
150 KOG0543 FKBP-type peptidyl-pro 98.8 1.1E-07 2.3E-12 84.6 12.5 106 69-185 214-320 (397)
151 PF13424 TPR_12: Tetratricopep 98.7 5.8E-08 1.3E-12 67.6 8.1 70 64-152 6-75 (78)
152 PF14559 TPR_19: Tetratricopep 98.7 3.7E-08 8.1E-13 66.6 6.6 65 4-70 2-66 (68)
153 PF13371 TPR_9: Tetratricopept 98.7 8.2E-08 1.8E-12 65.9 8.1 37 122-158 28-64 (73)
154 PF13371 TPR_9: Tetratricopept 98.7 7.8E-08 1.7E-12 66.0 7.8 57 129-185 1-58 (73)
155 PLN03098 LPA1 LOW PSII ACCUMUL 98.7 7.4E-08 1.6E-12 87.3 9.6 71 22-92 70-141 (453)
156 PF09295 ChAPs: ChAPs (Chs5p-A 98.7 5.7E-07 1.2E-11 81.5 14.7 114 5-149 181-294 (395)
157 PRK04841 transcriptional regul 98.7 1.5E-06 3.2E-11 87.2 19.2 165 3-185 462-641 (903)
158 COG1729 Uncharacterized protei 98.7 4.2E-07 9.1E-12 77.2 12.8 106 30-158 144-250 (262)
159 PLN03077 Protein ECB2; Provisi 98.7 2.4E-06 5.2E-11 85.4 19.4 194 5-207 501-718 (857)
160 PRK04841 transcriptional regul 98.6 4.3E-06 9.3E-11 83.9 20.3 163 3-185 419-602 (903)
161 PF13512 TPR_18: Tetratricopep 98.6 1.8E-06 3.8E-11 66.9 13.5 109 26-157 9-133 (142)
162 KOG1130 Predicted G-alpha GTPa 98.6 2.7E-07 5.9E-12 82.2 9.3 179 5-185 29-264 (639)
163 PRK11906 transcriptional regul 98.6 1.6E-06 3.4E-11 78.9 14.3 116 42-185 273-401 (458)
164 COG0457 NrfG FOG: TPR repeat [ 98.6 1.9E-05 4.1E-10 63.0 18.7 88 4-93 70-160 (291)
165 PF13428 TPR_14: Tetratricopep 98.5 1.6E-07 3.4E-12 58.2 4.6 41 124-164 2-43 (44)
166 COG0457 NrfG FOG: TPR repeat [ 98.5 2.3E-05 5E-10 62.5 18.4 175 7-185 37-231 (291)
167 PF04733 Coatomer_E: Coatomer 98.5 4E-06 8.8E-11 73.3 13.2 129 2-158 140-271 (290)
168 PF00515 TPR_1: Tetratricopept 98.4 7E-07 1.5E-11 51.9 4.8 34 123-156 1-34 (34)
169 PF12569 NARP1: NMDA receptor- 98.4 1.7E-05 3.6E-10 74.6 16.1 131 5-154 206-336 (517)
170 PF13512 TPR_18: Tetratricopep 98.4 1.6E-05 3.4E-10 61.7 13.2 80 69-171 16-99 (142)
171 COG3071 HemY Uncharacterized e 98.4 0.00028 6E-09 62.9 22.2 206 1-235 92-355 (400)
172 PF06552 TOM20_plant: Plant sp 98.3 8.3E-06 1.8E-10 65.4 11.2 50 116-165 62-123 (186)
173 COG1729 Uncharacterized protei 98.3 7.5E-06 1.6E-10 69.7 11.5 98 69-190 147-248 (262)
174 KOG3785 Uncharacterized conser 98.3 1.3E-05 2.7E-10 70.6 13.1 173 4-185 33-214 (557)
175 PF07719 TPR_2: Tetratricopept 98.3 1.7E-06 3.6E-11 50.0 5.0 34 123-156 1-34 (34)
176 KOG3081 Vesicle coat complex C 98.3 9.6E-05 2.1E-09 62.7 17.2 154 14-179 94-264 (299)
177 PF13431 TPR_17: Tetratricopep 98.3 5.2E-07 1.1E-11 52.6 2.7 32 145-176 1-33 (34)
178 KOG4234 TPR repeat-containing 98.3 9.8E-06 2.1E-10 66.0 10.6 95 70-185 102-197 (271)
179 COG4105 ComL DNA uptake lipopr 98.3 0.00013 2.8E-09 61.8 17.5 179 3-191 44-238 (254)
180 PF13431 TPR_17: Tetratricopep 98.3 6.8E-07 1.5E-11 52.2 2.7 34 15-48 1-34 (34)
181 COG4700 Uncharacterized protei 98.3 6.4E-05 1.4E-09 60.7 14.7 119 39-185 68-189 (251)
182 KOG4234 TPR repeat-containing 98.3 1.7E-05 3.6E-10 64.7 11.4 105 28-158 96-203 (271)
183 KOG4555 TPR repeat-containing 98.3 4.2E-05 9.1E-10 58.3 12.8 88 5-92 55-144 (175)
184 PF10300 DUF3808: Protein of u 98.2 9.7E-05 2.1E-09 69.0 17.3 155 6-185 201-376 (468)
185 KOG1127 TPR repeat-containing 98.2 4E-05 8.7E-10 74.9 14.5 180 4-185 13-222 (1238)
186 PF04184 ST7: ST7 protein; In 98.2 0.00014 3.1E-09 66.6 16.5 140 33-205 265-427 (539)
187 KOG2376 Signal recognition par 98.1 6.9E-05 1.5E-09 69.6 14.2 138 5-157 91-258 (652)
188 KOG4555 TPR repeat-containing 98.1 0.00011 2.4E-09 56.0 12.8 101 32-156 48-148 (175)
189 PF03704 BTAD: Bacterial trans 98.1 0.00011 2.5E-09 57.2 13.2 108 72-184 15-124 (146)
190 KOG3081 Vesicle coat complex C 98.1 0.00078 1.7E-08 57.3 18.2 154 29-186 74-237 (299)
191 KOG4648 Uncharacterized conser 98.1 2.6E-05 5.6E-10 68.4 9.0 101 30-158 100-200 (536)
192 KOG1130 Predicted G-alpha GTPa 98.0 2.2E-05 4.8E-10 70.3 8.5 158 8-185 170-344 (639)
193 KOG2796 Uncharacterized conser 98.0 0.00016 3.5E-09 61.4 12.7 136 29-185 179-315 (366)
194 PF06552 TOM20_plant: Plant sp 98.0 3.7E-05 8E-10 61.7 8.0 85 9-95 7-112 (186)
195 KOG2047 mRNA splicing factor [ 98.0 0.0024 5.2E-08 60.3 20.9 199 2-211 356-581 (835)
196 KOG4642 Chaperone-dependent E3 98.0 1.7E-05 3.6E-10 66.3 6.0 90 70-185 17-107 (284)
197 KOG4648 Uncharacterized conser 98.0 1.7E-05 3.6E-10 69.6 6.2 179 4-185 108-296 (536)
198 KOG2796 Uncharacterized conser 97.9 0.00047 1E-08 58.6 14.3 157 4-186 188-354 (366)
199 PF13181 TPR_8: Tetratricopept 97.9 1.7E-05 3.8E-10 45.7 4.2 33 124-156 2-34 (34)
200 KOG1586 Protein required for f 97.9 0.0011 2.4E-08 55.4 16.2 142 8-185 29-183 (288)
201 COG4105 ComL DNA uptake lipopr 97.9 0.0023 5E-08 54.2 18.2 137 26-185 33-196 (254)
202 KOG1915 Cell cycle control pro 97.9 0.002 4.2E-08 59.0 18.3 154 3-185 376-536 (677)
203 PF04184 ST7: ST7 protein; In 97.9 0.00037 8.1E-09 64.0 13.2 136 40-183 181-322 (539)
204 KOG3785 Uncharacterized conser 97.9 0.00025 5.4E-09 62.6 11.5 157 38-221 33-226 (557)
205 COG2976 Uncharacterized protei 97.8 0.0012 2.7E-08 53.7 14.4 116 45-185 70-188 (207)
206 PF13428 TPR_14: Tetratricopep 97.8 4.6E-05 1E-09 46.9 4.4 42 27-70 1-42 (44)
207 KOG2053 Mitochondrial inherita 97.8 0.00063 1.4E-08 66.1 13.9 138 5-171 21-160 (932)
208 KOG4642 Chaperone-dependent E3 97.8 0.00015 3.3E-09 60.6 8.2 86 5-92 22-107 (284)
209 KOG1585 Protein required for f 97.7 0.0018 3.9E-08 54.6 14.2 159 5-185 43-219 (308)
210 KOG0545 Aryl-hydrocarbon recep 97.7 0.00055 1.2E-08 57.6 11.0 107 70-185 185-293 (329)
211 PF07719 TPR_2: Tetratricopept 97.7 8.2E-05 1.8E-09 42.7 4.5 33 27-59 1-33 (34)
212 KOG1070 rRNA processing protei 97.7 0.0035 7.6E-08 63.7 18.1 146 13-185 1444-1593(1710)
213 PF00515 TPR_1: Tetratricopept 97.7 9.1E-05 2E-09 42.7 4.5 32 28-59 2-33 (34)
214 PF03704 BTAD: Bacterial trans 97.7 0.00089 1.9E-08 52.1 11.6 86 5-92 18-125 (146)
215 COG3118 Thioredoxin domain-con 97.7 0.0028 6.1E-08 54.8 15.3 153 26-207 133-286 (304)
216 KOG1070 rRNA processing protei 97.7 0.0047 1E-07 62.9 18.2 176 3-185 1468-1663(1710)
217 COG3118 Thioredoxin domain-con 97.6 0.003 6.6E-08 54.6 14.6 152 4-183 145-299 (304)
218 KOG1915 Cell cycle control pro 97.6 0.01 2.2E-07 54.5 18.1 152 5-185 85-236 (677)
219 PF13176 TPR_7: Tetratricopept 97.6 0.00012 2.6E-09 43.0 4.0 28 125-152 1-28 (36)
220 COG2976 Uncharacterized protei 97.5 0.0041 8.9E-08 50.7 13.5 99 32-158 94-194 (207)
221 COG4785 NlpI Lipoprotein NlpI, 97.5 0.00055 1.2E-08 56.7 8.6 75 116-190 92-167 (297)
222 PF13174 TPR_6: Tetratricopept 97.5 0.00016 3.5E-09 41.1 4.0 33 124-156 1-33 (33)
223 KOG4340 Uncharacterized conser 97.5 0.0024 5.2E-08 55.4 12.5 163 38-206 21-204 (459)
224 COG0790 FOG: TPR repeat, SEL1 97.5 0.0093 2E-07 51.9 16.4 146 6-185 90-266 (292)
225 KOG1585 Protein required for f 97.5 0.0042 9.1E-08 52.4 13.1 137 27-184 31-178 (308)
226 COG3898 Uncharacterized membra 97.5 0.013 2.9E-07 52.6 16.7 70 116-185 322-392 (531)
227 KOG2610 Uncharacterized conser 97.4 0.0056 1.2E-07 53.9 13.6 57 33-91 109-165 (491)
228 COG3898 Uncharacterized membra 97.4 0.033 7.2E-07 50.1 18.1 159 3-185 130-292 (531)
229 PF14561 TPR_20: Tetratricopep 97.4 0.0017 3.7E-08 46.6 8.4 80 12-91 7-86 (90)
230 PF13281 DUF4071: Domain of un 97.4 0.027 5.9E-07 50.8 17.8 130 26-182 140-285 (374)
231 KOG1941 Acetylcholine receptor 97.4 0.0022 4.8E-08 56.9 10.6 142 28-185 123-275 (518)
232 KOG2047 mRNA splicing factor [ 97.3 0.026 5.6E-07 53.7 17.4 156 4-186 398-580 (835)
233 PF13281 DUF4071: Domain of un 97.3 0.0074 1.6E-07 54.4 13.6 134 6-157 195-339 (374)
234 PF12968 DUF3856: Domain of Un 97.3 0.0058 1.3E-07 45.9 10.3 94 74-184 20-128 (144)
235 PF10300 DUF3808: Protein of u 97.3 0.0071 1.5E-07 56.6 13.6 125 5-154 245-378 (468)
236 smart00028 TPR Tetratricopepti 97.3 0.00046 1E-08 37.8 3.6 33 124-156 2-34 (34)
237 KOG0376 Serine-threonine phosp 97.2 0.00071 1.5E-08 61.8 6.5 88 73-186 14-102 (476)
238 KOG2610 Uncharacterized conser 97.2 0.0068 1.5E-07 53.4 11.6 161 16-183 54-236 (491)
239 COG4785 NlpI Lipoprotein NlpI, 97.2 0.0043 9.4E-08 51.5 9.7 105 26-158 64-168 (297)
240 KOG0551 Hsp90 co-chaperone CNS 97.1 0.0021 4.5E-08 56.4 7.9 96 67-185 85-182 (390)
241 KOG1941 Acetylcholine receptor 97.1 0.0031 6.8E-08 56.0 9.0 132 3-154 132-277 (518)
242 KOG0545 Aryl-hydrocarbon recep 97.1 0.006 1.3E-07 51.5 10.1 106 27-158 178-299 (329)
243 PF13176 TPR_7: Tetratricopept 97.1 0.0013 2.8E-08 38.6 4.3 27 67-93 3-29 (36)
244 KOG2053 Mitochondrial inherita 97.1 0.0056 1.2E-07 59.8 10.7 114 38-180 20-138 (932)
245 PF05843 Suf: Suppressor of fo 97.0 0.028 6.1E-07 48.9 14.3 81 9-91 17-98 (280)
246 PF05843 Suf: Suppressor of fo 97.0 0.028 6E-07 49.0 14.1 128 30-185 4-136 (280)
247 PF02259 FAT: FAT domain; Int 97.0 0.06 1.3E-06 47.7 16.6 147 23-169 142-305 (352)
248 KOG1586 Protein required for f 97.0 0.15 3.2E-06 43.0 17.2 180 6-207 47-245 (288)
249 PF09986 DUF2225: Uncharacteri 97.0 0.025 5.5E-07 47.2 12.9 109 76-204 90-212 (214)
250 PF13181 TPR_8: Tetratricopept 97.0 0.0013 2.8E-08 37.6 3.7 30 29-58 3-32 (34)
251 KOG4507 Uncharacterized conser 96.9 0.0053 1.1E-07 57.6 9.1 98 38-162 618-716 (886)
252 PF13374 TPR_10: Tetratricopep 96.9 0.0023 5E-08 38.2 4.6 29 124-152 3-31 (42)
253 PF13174 TPR_6: Tetratricopept 96.9 0.0016 3.5E-08 36.8 3.4 32 28-59 1-32 (33)
254 KOG2471 TPR repeat-containing 96.8 0.005 1.1E-07 56.6 8.0 142 19-169 232-382 (696)
255 PF09613 HrpB1_HrpK: Bacterial 96.8 0.02 4.3E-07 45.4 10.3 90 23-140 6-95 (160)
256 PF14561 TPR_20: Tetratricopep 96.8 0.0095 2.1E-07 42.7 7.8 44 142-185 7-51 (90)
257 KOG1308 Hsp70-interacting prot 96.8 0.0014 3.1E-08 57.6 3.9 88 4-93 125-212 (377)
258 KOG0376 Serine-threonine phosp 96.7 0.0026 5.7E-08 58.2 5.5 100 31-158 8-107 (476)
259 PF12968 DUF3856: Domain of Un 96.7 0.15 3.3E-06 38.4 13.6 102 36-152 18-129 (144)
260 PRK10941 hypothetical protein; 96.7 0.022 4.9E-07 49.2 10.7 81 124-208 182-263 (269)
261 KOG3617 WD40 and TPR repeat-co 96.6 0.044 9.5E-07 53.6 12.9 132 12-184 788-940 (1416)
262 PF14853 Fis1_TPR_C: Fis1 C-te 96.6 0.0083 1.8E-07 38.5 5.4 38 124-161 2-39 (53)
263 KOG1550 Extracellular protein 96.5 0.13 2.8E-06 49.2 15.8 145 5-184 261-425 (552)
264 KOG1308 Hsp70-interacting prot 96.5 0.0025 5.4E-08 56.0 3.3 52 39-92 126-177 (377)
265 COG0790 FOG: TPR repeat, SEL1 96.3 0.55 1.2E-05 40.7 17.5 145 5-185 53-220 (292)
266 KOG3617 WD40 and TPR repeat-co 96.3 0.14 3.1E-06 50.2 14.4 161 6-185 813-996 (1416)
267 TIGR02561 HrpB1_HrpK type III 96.3 0.14 3E-06 40.1 11.7 61 29-91 12-72 (153)
268 KOG2300 Uncharacterized conser 96.3 0.41 8.9E-06 44.4 16.2 165 2-186 332-515 (629)
269 PF09613 HrpB1_HrpK: Bacterial 96.1 0.14 3.1E-06 40.6 11.2 86 72-185 19-106 (160)
270 smart00028 TPR Tetratricopepti 96.0 0.01 2.3E-07 32.0 3.3 31 29-59 3-33 (34)
271 KOG3824 Huntingtin interacting 95.9 0.029 6.4E-07 49.0 7.1 61 127-187 120-181 (472)
272 PRK10941 hypothetical protein; 95.9 0.076 1.6E-06 46.0 9.5 56 4-59 192-247 (269)
273 KOG4507 Uncharacterized conser 95.8 0.027 5.8E-07 53.0 6.9 88 5-94 619-707 (886)
274 KOG1550 Extracellular protein 95.8 0.63 1.4E-05 44.6 16.4 141 8-185 227-393 (552)
275 COG4976 Predicted methyltransf 95.7 0.023 5E-07 47.6 5.3 58 3-60 5-62 (287)
276 PF08424 NRDE-2: NRDE-2, neces 95.7 1.4 3.1E-05 39.0 17.8 146 14-187 6-185 (321)
277 PF13374 TPR_10: Tetratricopep 95.6 0.026 5.7E-07 33.4 4.2 27 67-93 6-32 (42)
278 COG3914 Spy Predicted O-linked 95.6 0.35 7.6E-06 45.7 13.2 138 10-169 48-189 (620)
279 PF10602 RPN7: 26S proteasome 95.6 0.23 5.1E-06 40.2 10.8 109 26-154 35-144 (177)
280 PF07721 TPR_4: Tetratricopept 95.5 0.018 4E-07 30.9 2.8 24 124-147 2-25 (26)
281 PF07720 TPR_3: Tetratricopept 95.4 0.059 1.3E-06 31.6 5.0 33 124-156 2-36 (36)
282 PF09986 DUF2225: Uncharacteri 95.4 0.46 9.9E-06 39.7 12.2 112 39-164 89-208 (214)
283 KOG3824 Huntingtin interacting 95.3 0.037 8E-07 48.4 5.3 62 74-161 127-189 (472)
284 TIGR03504 FimV_Cterm FimV C-te 95.0 0.058 1.3E-06 33.1 4.3 41 160-205 3-43 (44)
285 PF12862 Apc5: Anaphase-promot 94.8 0.14 3.1E-06 36.8 6.7 68 74-158 9-76 (94)
286 KOG2471 TPR repeat-containing 94.7 0.17 3.8E-06 46.9 8.3 128 37-185 216-364 (696)
287 PF12862 Apc5: Anaphase-promot 94.6 0.15 3.2E-06 36.6 6.4 72 134-206 9-90 (94)
288 TIGR02561 HrpB1_HrpK type III 94.5 0.1 2.2E-06 40.8 5.4 74 74-173 21-95 (153)
289 COG2909 MalT ATP-dependent tra 94.4 5.5 0.00012 39.7 18.0 179 4-185 426-647 (894)
290 PRK15180 Vi polysaccharide bio 94.3 0.23 4.9E-06 46.1 8.1 130 3-161 299-430 (831)
291 PF08424 NRDE-2: NRDE-2, neces 94.2 3.8 8.2E-05 36.4 15.8 137 9-154 47-185 (321)
292 KOG1839 Uncharacterized protei 94.2 0.48 1E-05 48.6 10.7 164 3-185 942-1128(1236)
293 PF14853 Fis1_TPR_C: Fis1 C-te 94.1 0.28 6E-06 31.4 6.0 33 28-60 2-34 (53)
294 PF04910 Tcf25: Transcriptiona 94.0 4.5 9.8E-05 36.6 16.0 141 21-185 34-222 (360)
295 KOG0551 Hsp90 co-chaperone CNS 94.0 0.7 1.5E-05 40.9 10.1 106 26-157 80-187 (390)
296 PF10602 RPN7: 26S proteasome 93.7 0.97 2.1E-05 36.6 10.0 99 64-185 37-142 (177)
297 COG3629 DnrI DNA-binding trans 93.6 0.73 1.6E-05 40.1 9.6 62 123-184 153-215 (280)
298 KOG1464 COP9 signalosome, subu 93.6 3.8 8.2E-05 35.6 13.6 209 5-246 39-273 (440)
299 KOG4814 Uncharacterized conser 93.5 0.76 1.6E-05 44.1 10.1 100 65-185 357-457 (872)
300 KOG3616 Selective LIM binding 93.4 1.6 3.5E-05 42.7 12.2 123 6-151 778-910 (1636)
301 PF07721 TPR_4: Tetratricopept 93.3 0.1 2.3E-06 27.9 2.6 19 69-87 7-25 (26)
302 COG3629 DnrI DNA-binding trans 93.2 0.86 1.9E-05 39.6 9.4 65 26-92 152-216 (280)
303 KOG3364 Membrane protein invol 93.2 0.6 1.3E-05 36.0 7.4 77 124-207 33-115 (149)
304 PF15015 NYD-SP12_N: Spermatog 93.2 0.43 9.3E-06 43.5 7.6 103 70-180 183-286 (569)
305 PF02259 FAT: FAT domain; Int 93.1 3.7 8E-05 36.2 13.8 51 5-55 158-212 (352)
306 PF07720 TPR_3: Tetratricopept 92.7 0.37 8E-06 28.2 4.5 32 28-59 2-35 (36)
307 PF11207 DUF2989: Protein of u 92.5 1.1 2.4E-05 36.9 8.6 58 63-143 141-198 (203)
308 PF07079 DUF1347: Protein of u 92.4 8.6 0.00019 35.7 14.9 59 122-181 459-520 (549)
309 COG3914 Spy Predicted O-linked 92.4 5.5 0.00012 38.0 14.0 114 46-185 50-171 (620)
310 PF04053 Coatomer_WDAD: Coatom 92.1 8.8 0.00019 35.8 15.1 86 4-90 272-374 (443)
311 PF11207 DUF2989: Protein of u 91.9 0.7 1.5E-05 38.1 6.8 55 121-176 139-198 (203)
312 PF04910 Tcf25: Transcriptiona 91.9 7 0.00015 35.4 14.0 123 53-184 32-167 (360)
313 COG4649 Uncharacterized protei 91.6 6.3 0.00014 32.0 16.5 150 33-207 64-215 (221)
314 PF04781 DUF627: Protein of un 91.6 2.2 4.8E-05 31.7 8.6 102 71-185 4-107 (111)
315 PF12854 PPR_1: PPR repeat 91.4 0.44 9.5E-06 27.3 3.8 25 64-88 8-32 (34)
316 PF12854 PPR_1: PPR repeat 91.3 0.43 9.3E-06 27.3 3.7 29 153-181 4-32 (34)
317 PF10516 SHNi-TPR: SHNi-TPR; 91.3 0.39 8.5E-06 28.4 3.5 29 124-152 2-30 (38)
318 PF10579 Rapsyn_N: Rapsyn N-te 91.2 0.7 1.5E-05 32.1 5.2 55 127-181 10-68 (80)
319 KOG0985 Vesicle coat protein c 91.2 7.4 0.00016 39.8 13.9 106 71-185 1056-1162(1666)
320 COG2912 Uncharacterized conser 91.1 0.56 1.2E-05 40.4 5.7 57 4-60 192-248 (269)
321 PF04781 DUF627: Protein of un 91.0 3 6.4E-05 31.0 8.7 94 34-153 3-108 (111)
322 PF00244 14-3-3: 14-3-3 protei 90.9 5.5 0.00012 33.7 11.7 149 30-185 4-198 (236)
323 COG2909 MalT ATP-dependent tra 90.9 11 0.00025 37.6 14.9 130 33-183 421-566 (894)
324 PF08631 SPO22: Meiosis protei 90.9 10 0.00022 32.9 17.9 134 39-185 5-150 (278)
325 COG2912 Uncharacterized conser 90.7 2.8 6E-05 36.2 9.5 62 124-185 182-244 (269)
326 PF10373 EST1_DNA_bind: Est1 D 90.7 1.1 2.3E-05 38.4 7.3 61 12-75 1-62 (278)
327 PRK13184 pknD serine/threonine 90.6 2.1 4.5E-05 43.5 10.0 34 125-158 554-587 (932)
328 KOG2300 Uncharacterized conser 90.5 11 0.00024 35.3 13.7 134 26-179 6-150 (629)
329 KOG2396 HAT (Half-A-TPR) repea 90.4 2.7 5.8E-05 39.3 9.7 84 48-159 92-177 (568)
330 PF10373 EST1_DNA_bind: Est1 D 90.4 2.3 4.9E-05 36.3 9.1 44 142-185 1-45 (278)
331 KOG1310 WD40 repeat protein [G 89.2 1.8 3.8E-05 40.9 7.6 92 42-158 389-480 (758)
332 KOG2041 WD40 repeat protein [G 89.1 7.7 0.00017 38.0 11.8 109 63-182 796-936 (1189)
333 PF10579 Rapsyn_N: Rapsyn N-te 88.7 2.7 5.9E-05 29.2 6.5 61 31-92 10-72 (80)
334 COG3947 Response regulator con 88.7 1.6 3.6E-05 38.1 6.6 58 125-182 281-339 (361)
335 KOG1920 IkappaB kinase complex 88.3 8.1 0.00018 39.8 12.0 124 38-185 891-1028(1265)
336 TIGR03504 FimV_Cterm FimV C-te 88.1 1.7 3.8E-05 26.6 4.7 27 31-57 3-29 (44)
337 KOG3807 Predicted membrane pro 87.8 13 0.00029 33.3 11.7 129 43-179 200-334 (556)
338 KOG1258 mRNA processing protei 87.7 27 0.00058 33.5 15.7 164 3-170 307-489 (577)
339 KOG2581 26S proteasome regulat 87.3 9.4 0.0002 34.9 10.7 130 6-157 139-281 (493)
340 PF10255 Paf67: RNA polymerase 87.2 3.1 6.8E-05 38.1 7.9 108 125-233 124-251 (404)
341 KOG0890 Protein kinase of the 87.2 27 0.00059 38.8 15.5 160 11-185 1647-1833(2382)
342 KOG3616 Selective LIM binding 86.7 20 0.00043 35.6 13.1 166 4-179 848-1057(1636)
343 KOG0985 Vesicle coat protein c 86.2 15 0.00032 37.8 12.1 156 7-184 1089-1248(1666)
344 PF13041 PPR_2: PPR repeat fam 85.9 1.8 4E-05 26.7 4.2 29 64-92 4-32 (50)
345 KOG3807 Predicted membrane pro 85.7 25 0.00054 31.6 12.3 25 161-185 280-304 (556)
346 PF07079 DUF1347: Protein of u 85.5 9.1 0.0002 35.6 9.8 65 121-185 77-157 (549)
347 PF01535 PPR: PPR repeat; Int 85.4 1.6 3.5E-05 23.5 3.4 26 66-91 3-28 (31)
348 PF04053 Coatomer_WDAD: Coatom 85.3 22 0.00047 33.2 12.6 126 38-185 272-402 (443)
349 KOG1914 mRNA cleavage and poly 85.0 37 0.00079 32.5 17.1 73 17-92 10-82 (656)
350 PF10516 SHNi-TPR: SHNi-TPR; 85.0 2.3 5E-05 25.1 4.0 28 66-93 4-31 (38)
351 PF10255 Paf67: RNA polymerase 84.9 5.4 0.00012 36.6 8.3 66 68-151 127-192 (404)
352 smart00101 14_3_3 14-3-3 homol 84.7 24 0.00052 30.1 14.4 155 30-185 4-200 (244)
353 PF11817 Foie-gras_1: Foie gra 84.6 13 0.00028 31.6 10.1 90 41-150 152-245 (247)
354 KOG1839 Uncharacterized protei 84.5 6.2 0.00013 40.9 9.1 137 30-186 935-1087(1236)
355 PF10345 Cohesin_load: Cohesin 84.1 43 0.00092 32.5 17.9 150 11-184 39-207 (608)
356 KOG2396 HAT (Half-A-TPR) repea 84.0 18 0.00039 34.1 11.1 67 121-187 103-171 (568)
357 smart00386 HAT HAT (Half-A-TPR 83.8 2.4 5.3E-05 22.9 3.7 29 137-165 1-30 (33)
358 KOG3364 Membrane protein invol 83.4 10 0.00022 29.3 7.9 70 24-94 29-102 (149)
359 TIGR00756 PPR pentatricopeptid 83.4 3 6.6E-05 22.8 4.1 27 66-92 3-29 (35)
360 KOG1464 COP9 signalosome, subu 83.2 27 0.00059 30.5 11.2 126 40-185 40-174 (440)
361 smart00299 CLH Clathrin heavy 81.7 20 0.00044 27.1 11.8 36 39-76 19-54 (140)
362 PF08631 SPO22: Meiosis protei 81.7 21 0.00044 30.9 10.4 86 74-177 4-105 (278)
363 PF13041 PPR_2: PPR repeat fam 81.0 3.5 7.7E-05 25.3 4.0 32 154-185 1-32 (50)
364 COG3947 Response regulator con 80.9 8.2 0.00018 33.9 7.3 57 33-91 285-341 (361)
365 PRK13184 pknD serine/threonine 80.8 11 0.00025 38.3 9.4 89 3-94 485-583 (932)
366 KOG1310 WD40 repeat protein [G 78.8 9.6 0.00021 36.2 7.5 86 7-94 388-476 (758)
367 KOG1914 mRNA cleavage and poly 78.6 64 0.0014 30.9 17.5 171 14-185 266-464 (656)
368 COG5191 Uncharacterized conser 78.5 7 0.00015 34.6 6.2 70 120-189 104-175 (435)
369 cd02682 MIT_AAA_Arch MIT: doma 78.4 4.9 0.00011 27.7 4.3 28 124-151 7-34 (75)
370 PRK15180 Vi polysaccharide bio 78.2 21 0.00046 33.6 9.4 122 39-188 301-423 (831)
371 PF11846 DUF3366: Domain of un 78.2 8.2 0.00018 31.3 6.4 47 45-94 129-175 (193)
372 KOG2041 WD40 repeat protein [G 77.5 20 0.00043 35.3 9.4 59 123-181 796-877 (1189)
373 COG4455 ImpE Protein of avirul 77.3 13 0.00029 31.3 7.2 54 6-59 14-67 (273)
374 KOG1538 Uncharacterized conser 77.3 17 0.00036 35.5 8.7 17 33-49 709-725 (1081)
375 PF04190 DUF410: Protein of un 77.2 44 0.00095 28.7 10.9 27 121-147 88-114 (260)
376 KOG4814 Uncharacterized conser 76.8 36 0.00077 33.2 10.7 64 31-94 358-425 (872)
377 KOG0530 Protein farnesyltransf 76.3 52 0.0011 28.6 14.1 123 35-185 51-176 (318)
378 PF01535 PPR: PPR repeat; Int 76.3 4.8 0.0001 21.5 3.2 24 126-149 3-26 (31)
379 PF04212 MIT: MIT (microtubule 76.2 6 0.00013 26.4 4.3 28 125-152 7-34 (69)
380 smart00386 HAT HAT (Half-A-TPR 75.6 8.5 0.00018 20.5 4.2 25 8-32 2-26 (33)
381 PF13812 PPR_3: Pentatricopept 73.7 10 0.00022 20.6 4.2 26 66-91 4-29 (34)
382 KOG2422 Uncharacterized conser 73.3 91 0.002 30.1 13.4 87 9-95 254-374 (665)
383 PF11846 DUF3366: Domain of un 73.3 15 0.00033 29.7 6.8 32 123-154 144-175 (193)
384 KOG1497 COP9 signalosome, subu 73.0 70 0.0015 28.6 11.0 103 64-185 104-213 (399)
385 cd02680 MIT_calpain7_2 MIT: do 72.7 9.2 0.0002 26.3 4.4 19 134-152 17-35 (75)
386 KOG0276 Vesicle coat complex C 72.7 64 0.0014 31.4 11.2 27 66-92 669-695 (794)
387 cd02679 MIT_spastin MIT: domai 71.9 28 0.00061 24.2 6.8 47 161-207 13-66 (79)
388 TIGR00756 PPR pentatricopeptid 70.8 10 0.00023 20.4 3.9 22 163-184 7-28 (35)
389 COG4455 ImpE Protein of avirul 69.5 50 0.0011 28.0 8.8 54 132-185 10-64 (273)
390 KOG2997 F-box protein FBX9 [Ge 69.0 7.4 0.00016 34.4 4.1 29 130-158 26-54 (366)
391 PF10345 Cohesin_load: Cohesin 68.7 1.2E+02 0.0026 29.5 18.0 156 6-182 73-251 (608)
392 cd02681 MIT_calpain7_1 MIT: do 68.7 13 0.00028 25.6 4.5 28 125-152 8-35 (76)
393 cd02680 MIT_calpain7_2 MIT: do 68.7 6.7 0.00015 27.0 3.1 34 8-56 2-35 (75)
394 KOG0530 Protein farnesyltransf 68.4 81 0.0018 27.5 11.9 86 5-92 55-142 (318)
395 KOG0890 Protein kinase of the 68.3 35 0.00077 38.0 9.5 118 32-180 1388-1507(2382)
396 PF11817 Foie-gras_1: Foie gra 67.2 32 0.00069 29.2 7.7 59 125-183 180-245 (247)
397 cd02684 MIT_2 MIT: domain cont 66.2 17 0.00036 24.9 4.7 22 131-152 14-35 (75)
398 cd02683 MIT_1 MIT: domain cont 65.7 12 0.00025 25.9 3.8 27 126-152 9-35 (77)
399 COG4649 Uncharacterized protei 65.5 74 0.0016 26.0 14.7 122 5-151 70-195 (221)
400 smart00671 SEL1 Sel1-like repe 65.5 15 0.00032 20.3 3.8 28 125-152 3-34 (36)
401 PHA02537 M terminase endonucle 65.5 38 0.00081 28.7 7.6 22 136-157 191-212 (230)
402 TIGR03362 VI_chp_7 type VI sec 64.9 99 0.0022 27.3 16.7 144 39-185 111-279 (301)
403 PF08238 Sel1: Sel1 repeat; I 64.2 19 0.0004 20.3 4.1 29 124-152 2-37 (39)
404 PF14863 Alkyl_sulf_dimr: Alky 63.9 23 0.00051 27.5 5.6 50 123-172 70-120 (141)
405 PF14863 Alkyl_sulf_dimr: Alky 63.5 25 0.00055 27.3 5.8 49 28-78 71-119 (141)
406 cd02682 MIT_AAA_Arch MIT: doma 61.8 49 0.0011 22.7 6.5 28 33-60 12-46 (75)
407 smart00299 CLH Clathrin heavy 61.7 67 0.0014 24.1 12.3 74 7-88 21-94 (140)
408 PF08311 Mad3_BUB1_I: Mad3/BUB 61.2 69 0.0015 24.2 8.4 43 141-183 81-126 (126)
409 PF04190 DUF410: Protein of un 61.2 1.1E+02 0.0023 26.3 11.8 25 156-180 89-114 (260)
410 KOG0276 Vesicle coat complex C 61.0 1.7E+02 0.0037 28.6 11.6 31 122-152 665-695 (794)
411 PF10952 DUF2753: Protein of u 60.3 36 0.00078 25.9 5.8 59 126-184 4-78 (140)
412 cd02679 MIT_spastin MIT: domai 59.1 21 0.00045 24.8 4.1 28 125-152 10-37 (79)
413 PF09797 NatB_MDM20: N-acetylt 58.6 1.4E+02 0.003 26.8 10.9 50 40-92 196-245 (365)
414 COG4259 Uncharacterized protei 58.5 27 0.00058 25.6 4.7 48 13-60 57-105 (121)
415 PF02064 MAS20: MAS20 protein 58.4 30 0.00065 26.1 5.2 27 33-59 69-95 (121)
416 PF04212 MIT: MIT (microtubule 58.4 28 0.00061 23.0 4.7 26 160-185 9-34 (69)
417 PF10952 DUF2753: Protein of u 58.2 82 0.0018 24.1 7.9 81 67-158 5-89 (140)
418 smart00745 MIT Microtubule Int 58.0 21 0.00045 24.2 4.0 25 127-151 12-36 (77)
419 PF15015 NYD-SP12_N: Spermatog 56.3 61 0.0013 30.1 7.6 79 4-84 187-283 (569)
420 KOG1497 COP9 signalosome, subu 56.2 1.5E+02 0.0033 26.6 12.9 106 27-152 103-213 (399)
421 COG4259 Uncharacterized protei 55.9 36 0.00079 24.9 5.0 38 122-159 71-108 (121)
422 COG5107 RNA14 Pre-mRNA 3'-end 55.6 1.9E+02 0.004 27.4 17.9 76 15-92 30-105 (660)
423 cd00280 TRFH Telomeric Repeat 55.6 1.2E+02 0.0025 25.0 9.9 44 128-172 116-160 (200)
424 KOG4014 Uncharacterized conser 52.6 1.3E+02 0.0029 24.8 10.2 47 136-184 181-232 (248)
425 COG5159 RPN6 26S proteasome re 51.8 1.7E+02 0.0038 25.9 11.6 57 32-88 8-70 (421)
426 cd02656 MIT MIT: domain contai 51.5 31 0.00067 23.2 4.1 26 127-152 10-35 (75)
427 COG1747 Uncharacterized N-term 51.4 2.3E+02 0.005 27.2 18.1 168 13-185 86-288 (711)
428 cd02678 MIT_VPS4 MIT: domain c 51.3 34 0.00073 23.2 4.2 26 126-151 9-34 (75)
429 PF07219 HemY_N: HemY protein 51.2 40 0.00087 24.6 4.9 30 30-59 62-91 (108)
430 PF12583 TPPII_N: Tripeptidyl 50.5 50 0.0011 25.3 5.2 44 123-166 76-120 (139)
431 PF02184 HAT: HAT (Half-A-TPR) 49.1 42 0.0009 19.0 3.5 26 138-163 2-27 (32)
432 COG5191 Uncharacterized conser 49.0 26 0.00057 31.2 4.0 77 17-94 97-173 (435)
433 PF04348 LppC: LppC putative l 48.2 6 0.00013 37.8 0.0 81 7-88 2-86 (536)
434 KOG4279 Serine/threonine prote 48.1 2.9E+02 0.0062 28.0 11.0 133 5-158 255-401 (1226)
435 KOG1538 Uncharacterized conser 46.2 60 0.0013 31.9 6.2 27 123-149 804-830 (1081)
436 cd02683 MIT_1 MIT: domain cont 45.6 30 0.00064 23.8 3.2 20 73-92 16-35 (77)
437 KOG0686 COP9 signalosome, subu 45.1 1.1E+02 0.0024 28.3 7.4 98 65-185 152-258 (466)
438 PF09797 NatB_MDM20: N-acetylt 45.0 96 0.0021 27.8 7.3 82 9-92 199-281 (365)
439 PF14689 SPOB_a: Sensor_kinase 44.5 55 0.0012 21.3 4.2 26 159-184 26-51 (62)
440 cd02681 MIT_calpain7_1 MIT: do 44.4 49 0.0011 22.7 4.1 17 38-54 17-33 (76)
441 KOG3783 Uncharacterized conser 44.0 98 0.0021 29.5 7.2 59 127-185 453-520 (546)
442 PF06957 COPI_C: Coatomer (COP 43.7 1.7E+02 0.0037 27.2 8.6 44 165-212 309-352 (422)
443 PF09670 Cas_Cas02710: CRISPR- 43.6 2.5E+02 0.0055 25.5 12.6 61 32-92 136-198 (379)
444 PF05053 Menin: Menin; InterP 42.8 86 0.0019 30.1 6.6 63 122-184 276-346 (618)
445 KOG1258 mRNA processing protei 42.5 3.3E+02 0.0071 26.4 18.1 123 27-176 297-420 (577)
446 KOG3783 Uncharacterized conser 42.0 3.2E+02 0.007 26.2 10.5 126 6-158 203-338 (546)
447 KOG2062 26S proteasome regulat 42.0 2E+02 0.0044 28.8 9.1 153 27-184 397-565 (929)
448 PF02064 MAS20: MAS20 protein 41.8 52 0.0011 24.9 4.2 32 127-158 67-98 (121)
449 PF08311 Mad3_BUB1_I: Mad3/BUB 41.2 1.2E+02 0.0025 22.9 6.2 46 45-90 81-126 (126)
450 COG4941 Predicted RNA polymera 40.7 1.2E+02 0.0027 27.3 6.9 84 8-92 311-394 (415)
451 cd02677 MIT_SNX15 MIT: domain 40.6 59 0.0013 22.2 4.0 24 128-151 11-34 (75)
452 TIGR03362 VI_chp_7 type VI sec 40.3 1.6E+02 0.0034 26.0 7.7 61 32-93 218-280 (301)
453 PF10037 MRP-S27: Mitochondria 39.9 1.8E+02 0.0039 27.1 8.2 63 27-92 103-167 (429)
454 PF09205 DUF1955: Domain of un 39.7 1.8E+02 0.0039 22.7 12.2 117 4-152 13-149 (161)
455 TIGR00985 3a0801s04tom mitocho 39.7 1.8E+02 0.004 22.7 7.1 27 33-59 96-123 (148)
456 PF00244 14-3-3: 14-3-3 protei 39.5 62 0.0013 27.3 4.9 41 126-166 4-46 (236)
457 PF03791 KNOX2: KNOX2 domain ; 39.1 25 0.00054 22.3 1.8 26 224-259 11-37 (52)
458 PF04348 LppC: LppC putative l 38.2 11 0.00023 36.2 0.0 119 41-183 2-125 (536)
459 PF07163 Pex26: Pex26 protein; 37.1 2.9E+02 0.0063 24.3 9.3 123 3-146 45-181 (309)
460 KOG1920 IkappaB kinase complex 36.8 3.7E+02 0.0081 28.4 10.3 126 36-181 860-990 (1265)
461 KOG4279 Serine/threonine prote 36.3 44 0.00096 33.3 3.8 119 26-170 200-334 (1226)
462 PF04762 IKI3: IKI3 family; I 36.2 5.1E+02 0.011 26.8 12.7 22 132-153 881-902 (928)
463 PF10366 Vps39_1: Vacuolar sor 36.1 49 0.0011 24.3 3.3 26 66-91 42-67 (108)
464 KOG0686 COP9 signalosome, subu 35.9 3.3E+02 0.0072 25.3 9.0 106 28-151 151-257 (466)
465 COG3107 LppC Putative lipoprot 35.1 2.9E+02 0.0063 26.6 8.7 87 4-91 38-127 (604)
466 KOG1811 Predicted Zn2+-binding 35.0 3.5E+02 0.0077 26.6 9.3 78 155-236 585-676 (1141)
467 KOG2460 Signal recognition par 34.3 1.9E+02 0.0041 27.7 7.3 25 161-185 427-451 (593)
468 PF14852 Fis1_TPR_N: Fis1 N-te 33.7 92 0.002 17.9 3.5 27 125-151 3-32 (35)
469 COG3014 Uncharacterized protei 33.5 3.2E+02 0.007 24.8 8.3 28 125-152 127-154 (449)
470 PF15297 CKAP2_C: Cytoskeleton 32.9 3.6E+02 0.0078 24.4 8.6 48 45-92 121-169 (353)
471 PHA02537 M terminase endonucle 32.5 3.1E+02 0.0067 23.2 11.2 89 6-94 96-209 (230)
472 PRK13883 conjugal transfer pro 32.1 61 0.0013 25.5 3.4 43 197-239 35-77 (151)
473 TIGR02996 rpt_mate_G_obs repea 32.1 1.2E+02 0.0026 18.3 3.9 32 144-175 3-35 (42)
474 PRK13835 conjugal transfer pro 31.7 62 0.0014 25.2 3.3 44 197-242 41-84 (145)
475 cd00280 TRFH Telomeric Repeat 31.5 3E+02 0.0064 22.7 7.8 24 35-59 119-142 (200)
476 KOG0546 HSP90 co-chaperone CPR 30.3 77 0.0017 28.6 4.0 61 125-185 277-338 (372)
477 PF09670 Cas_Cas02710: CRISPR- 30.0 4.3E+02 0.0092 24.0 13.1 53 4-56 142-198 (379)
478 PF00637 Clathrin: Region in C 29.9 29 0.00064 26.2 1.3 74 7-88 21-95 (143)
479 PF15297 CKAP2_C: Cytoskeleton 29.8 2.8E+02 0.006 25.1 7.4 60 126-185 103-169 (353)
480 PF10037 MRP-S27: Mitochondria 29.5 1.6E+02 0.0034 27.4 6.1 61 125-185 105-167 (429)
481 PRK15490 Vi polysaccharide bio 29.4 2.9E+02 0.0064 26.8 8.0 78 6-87 21-98 (578)
482 PF07283 TrbH: Conjugal transf 29.3 74 0.0016 24.0 3.3 42 198-239 8-49 (121)
483 PF14929 TAF1_subA: TAF RNA Po 28.5 5.5E+02 0.012 24.8 11.9 45 139-183 391-439 (547)
484 PF10366 Vps39_1: Vacuolar sor 28.5 1.5E+02 0.0032 21.7 4.8 26 126-151 42-67 (108)
485 COG5107 RNA14 Pre-mRNA 3'-end 28.1 2.1E+02 0.0045 27.1 6.4 166 15-185 290-495 (660)
486 KOG0546 HSP90 co-chaperone CPR 27.8 55 0.0012 29.5 2.7 49 12-60 294-342 (372)
487 PF12583 TPPII_N: Tripeptidyl 27.5 1.1E+02 0.0023 23.6 3.8 33 28-60 77-109 (139)
488 PF10938 YfdX: YfdX protein; 27.2 3.1E+02 0.0067 21.5 7.5 105 69-184 8-145 (155)
489 KOG0292 Vesicle coat complex C 27.1 1E+02 0.0022 31.4 4.6 33 121-153 670-702 (1202)
490 COG2178 Predicted RNA-binding 26.6 3.7E+02 0.008 22.2 8.4 39 139-184 19-57 (204)
491 PF09205 DUF1955: Domain of un 25.6 3.3E+02 0.0071 21.3 14.7 138 34-185 9-149 (161)
492 PF12739 TRAPPC-Trs85: ER-Golg 25.5 5.3E+02 0.011 23.7 10.6 104 62-185 207-329 (414)
493 KOG2709 Uncharacterized conser 25.1 81 0.0018 29.2 3.3 28 125-152 24-51 (560)
494 PF12753 Nro1: Nuclear pore co 24.6 1.7E+02 0.0036 26.9 5.2 59 9-69 334-404 (404)
495 KOG0739 AAA+-type ATPase [Post 24.3 3.2E+02 0.007 24.5 6.7 16 77-92 24-39 (439)
496 PF09477 Type_III_YscG: Bacter 24.2 3.1E+02 0.0066 20.5 10.3 51 30-82 9-59 (116)
497 PF08626 TRAPPC9-Trs120: Trans 23.5 85 0.0018 33.3 3.6 42 124-165 243-284 (1185)
498 KOG2066 Vacuolar assembly/sort 23.5 4.2E+02 0.0091 26.7 7.9 102 132-240 365-482 (846)
499 KOG2114 Vacuolar assembly/sort 23.5 7E+02 0.015 25.5 9.4 57 36-94 343-399 (933)
500 PRK11619 lytic murein transgly 23.0 7.4E+02 0.016 24.4 15.8 132 39-181 324-464 (644)
No 1
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.91 E-value=2e-23 Score=190.25 Aligned_cols=176 Identities=22% Similarity=0.223 Sum_probs=100.7
Q ss_pred CCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024858 7 KDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEML 86 (261)
Q Consensus 7 ~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~ 86 (261)
+.+++|+.+|.+|+...|+++.++-+||.+|..+|..+-||..|++++.+.|+. ....++|++.+...|+..||+.+|
T Consensus 266 ~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F--~~Ay~NlanALkd~G~V~ea~~cY 343 (966)
T KOG4626|consen 266 RIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNF--PDAYNNLANALKDKGSVTEAVDCY 343 (966)
T ss_pred hcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCc--hHHHhHHHHHHHhccchHHHHHHH
Confidence 445555555555555555555555555555555555555555555555555552 223444555555555555555555
Q ss_pred HHHHHhhcch-hhhcCcchHHHhhchh------hhh--hhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch
Q 024858 87 KRKLRLIYQG-EAFNGKPTKTARSHGK------KFQ--VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN 157 (261)
Q Consensus 87 ~~al~l~~~~-~~~~~~~~~~~~~~~~------~~~--~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~ 157 (261)
.++|.+.|.- .+.+ +.....+..++ .+. +++.|+++.+++|||.+|.++|++++|+.+|++|+.++|..+
T Consensus 344 nkaL~l~p~hadam~-NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fA 422 (966)
T KOG4626|consen 344 NKALRLCPNHADAMN-NLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFA 422 (966)
T ss_pred HHHHHhCCccHHHHH-HHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHH
Confidence 5555554321 1111 01111111111 011 345566677777777777777777777777777777777777
Q ss_pred h-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 158 K-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 158 ~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
+ +.|+|++|-++|+.++|++.|.+++..
T Consensus 423 da~~NmGnt~ke~g~v~~A~q~y~rAI~~ 451 (966)
T KOG4626|consen 423 DALSNMGNTYKEMGDVSAAIQCYTRAIQI 451 (966)
T ss_pred HHHHhcchHHHHhhhHHHHHHHHHHHHhc
Confidence 7 667777777777777777777777776
No 2
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.91 E-value=7.8e-24 Score=192.85 Aligned_cols=179 Identities=19% Similarity=0.158 Sum_probs=96.4
Q ss_pred hcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHH
Q 024858 5 VQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIE 84 (261)
Q Consensus 5 ~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~ 84 (261)
.+|++.+|..+|.+||..+|..+-+|.+||.++..+|...+||..|+++++++|.. ...+.+||++|.+.+++++|+.
T Consensus 196 a~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f--~dAYiNLGnV~ke~~~~d~Avs 273 (966)
T KOG4626|consen 196 AEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNF--LDAYINLGNVYKEARIFDRAVS 273 (966)
T ss_pred hhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcc--hHHHhhHHHHHHHHhcchHHHH
Confidence 45666666666666666666666666666666666666666666666666666653 2234446666666666666666
Q ss_pred HHHHHHHhhcchhhhcCcchHHHhhch------hhhh--hhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 024858 85 MLKRKLRLIYQGEAFNGKPTKTARSHG------KKFQ--VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDA 156 (261)
Q Consensus 85 ~~~~al~l~~~~~~~~~~~~~~~~~~~------~~~~--~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~ 156 (261)
+|.+++.+.|......|+..-....+| ..+. +++.|+++++++|||.++...|+..||+.+|.+||.+.|++
T Consensus 274 ~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~h 353 (966)
T KOG4626|consen 274 CYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNH 353 (966)
T ss_pred HHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCcc
Confidence 666666654422111111000000000 1111 44555555555555555555555555555555555555555
Q ss_pred hh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 157 NK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 157 ~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
++ .+|||+++.++|.+++|..+|++++..
T Consensus 354 adam~NLgni~~E~~~~e~A~~ly~~al~v 383 (966)
T KOG4626|consen 354 ADAMNNLGNIYREQGKIEEATRLYLKALEV 383 (966)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHhh
Confidence 55 555555555555555555555555554
No 3
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.85 E-value=2.8e-19 Score=171.45 Aligned_cols=227 Identities=15% Similarity=0.100 Sum_probs=163.2
Q ss_pred cCCHHHHHHHHHHHHHc---CCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHH
Q 024858 6 QKDPEAAIVLFWKAINA---GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ 82 (261)
Q Consensus 6 ~~~~~~A~~~~~~al~~---~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA 82 (261)
.+++++|+.+|++++.. +|....++..+|.++..+|++++|+..+++++.++|+.. ..+..+|.+|...|++++|
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~--~~~~~la~~~~~~g~~~eA 384 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVT--QSYIKRASMNLELGDPDKA 384 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH--HHHHHHHHHHHHCCCHHHH
Confidence 46788888888888865 477777888888888888888888888888888888743 3445578888888888888
Q ss_pred HHHHHHHHHhhcchh-hhcCcchHHHhhch------hhhh--hhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 024858 83 IEMLKRKLRLIYQGE-AFNGKPTKTARSHG------KKFQ--VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMID 153 (261)
Q Consensus 83 ~~~~~~al~l~~~~~-~~~~~~~~~~~~~~------~~~~--~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~ 153 (261)
+..|++++++.|... .+.. ........+ ..+. +.+.|++..++.++|.++.++|++++|+..|++++...
T Consensus 385 ~~~~~~al~~~p~~~~~~~~-lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 463 (615)
T TIGR00990 385 EEDFDKALKLNSEDPDIYYH-RAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF 463 (615)
T ss_pred HHHHHHHHHhCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 888888888765332 1110 000000001 1111 56788999999999999999999999999999999999
Q ss_pred CCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhCCCCCCc-----------------chhhHHHHHHHHHHHHhcCC-CCc
Q 024858 154 PDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCE-----------------DGRTRKRAEELLLELESKQP-PPD 214 (261)
Q Consensus 154 P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~~~~~~-----------------~~~~~~~a~~~l~~l~~~~~-~~~ 214 (261)
|+++. +.++|.++..+|++++|+..|++++...+.... ....++.|...+.......| +..
T Consensus 464 P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~ 543 (615)
T TIGR00990 464 PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDI 543 (615)
T ss_pred CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence 99998 889999999999999999999999997432111 02455566666666433333 333
Q ss_pred hhhhcccch-----hHHHHHHHHHHH
Q 024858 215 LSDLLGLNL-----EDEFVNGLEEMV 235 (261)
Q Consensus 215 ~~~~~~~~~-----~d~~~~~~~~~l 235 (261)
+...+|..+ +++++..|+..+
T Consensus 544 a~~~la~~~~~~g~~~eAi~~~e~A~ 569 (615)
T TIGR00990 544 AVATMAQLLLQQGDVDEALKLFERAA 569 (615)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 444556555 366666666654
No 4
>PRK12370 invasion protein regulator; Provisional
Probab=99.80 E-value=3.1e-18 Score=162.27 Aligned_cols=176 Identities=10% Similarity=-0.037 Sum_probs=107.0
Q ss_pred cCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHc---------CCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHc
Q 024858 6 QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQL---------DRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKC 76 (261)
Q Consensus 6 ~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~---------g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~ 76 (261)
.+++++|+.+|+++++.+|+++.++..+|.++... +++++|+..++++++++|+++ ..+..+|.++...
T Consensus 274 ~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~--~a~~~lg~~~~~~ 351 (553)
T PRK12370 274 PYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNP--QALGLLGLINTIH 351 (553)
T ss_pred HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHc
Confidence 34577899999999999999999999998877643 347899999999999999854 3456688888999
Q ss_pred CCHHHHHHHHHHHHHhhcchh-hhcCcchHHHhhchh------hhh--hhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 024858 77 GKVEEQIEMLKRKLRLIYQGE-AFNGKPTKTARSHGK------KFQ--VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQ 147 (261)
Q Consensus 77 g~~~eA~~~~~~al~l~~~~~-~~~~~~~~~~~~~~~------~~~--~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~ 147 (261)
|++++|+..|+++++++|... ++.. ........++ .+. +.++|+++.++..++.++..+|++++|+..++
T Consensus 352 g~~~~A~~~~~~Al~l~P~~~~a~~~-lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 352 SEYIVGSLLFKQANLLSPISADIKYY-YGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 999999999999998865221 1100 0000000000 000 33444444444444444444555555555555
Q ss_pred HHHhhC-CCchh-hhhHHHHHHHcCCHHHHHHHHHHHHh
Q 024858 148 KAQMID-PDANK-ACNLGLCLIKRTRYNEARSVLEDVLY 184 (261)
Q Consensus 148 ~al~~~-P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~ 184 (261)
+++... |+++. +.++|.+|..+|++++|...+++++.
T Consensus 431 ~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~ 469 (553)
T PRK12370 431 ELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIST 469 (553)
T ss_pred HHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh
Confidence 555443 34444 44455555555555555555554443
No 5
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.80 E-value=1.2e-17 Score=161.13 Aligned_cols=236 Identities=14% Similarity=0.089 Sum_probs=171.3
Q ss_pred chhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHH
Q 024858 2 VQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEE 81 (261)
Q Consensus 2 ~~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~e 81 (261)
.++..|++++|+..|++++..+|+++.++..+|.++.++|++++|+..++++++++|++. .....++.+|...|++++
T Consensus 85 ~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~--~a~~~la~~l~~~g~~~e 162 (656)
T PRK15174 85 SPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNS--QIFALHLRTLVLMDKELQ 162 (656)
T ss_pred hHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH--HHHHHHHHHHHHCCChHH
Confidence 356789999999999999999999999999999999999999999999999999999843 355668888999999999
Q ss_pred HHHHHHHHHHhhcchh-hhc--------CcchH-------------------------HHhhchh------hhh--hhcC
Q 024858 82 QIEMLKRKLRLIYQGE-AFN--------GKPTK-------------------------TARSHGK------KFQ--VSVR 119 (261)
Q Consensus 82 A~~~~~~al~l~~~~~-~~~--------~~~~~-------------------------~~~~~~~------~~~--~~l~ 119 (261)
|+..+++++...|... ++. +.... .....+. .+. +.+.
T Consensus 163 A~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~ 242 (656)
T PRK15174 163 AISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG 242 (656)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 9999988877654321 110 10000 0000010 011 4678
Q ss_pred CCcHHHHHHHHHHHHHcCCHHH----HHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhCCCCCCc---
Q 024858 120 QETSRLLGNLAWAYMQKTNFMA----AEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCE--- 191 (261)
Q Consensus 120 p~~~~~~~~Lg~~~~~~g~~~e----A~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~~~~~~--- 191 (261)
|+++.++.+||.+|..+|++++ |+..|+++++++|++.. +.++|.++..+|++++|+.++++++...+..+.
T Consensus 243 p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~ 322 (656)
T PRK15174 243 LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRA 322 (656)
T ss_pred CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 9999999999999999999986 89999999999999998 889999999999999999999999997432221
Q ss_pred -------chhhHHHHHHHHHHHHhcCCCC-chhhhcccch-----hHHHHHHHHHHHHhhc
Q 024858 192 -------DGRTRKRAEELLLELESKQPPP-DLSDLLGLNL-----EDEFVNGLEEMVRVWA 239 (261)
Q Consensus 192 -------~~~~~~~a~~~l~~l~~~~~~~-~~~~~~~~~~-----~d~~~~~~~~~l~~~~ 239 (261)
..+.++.|...+..+....|.. ......|..+ .++..+.|+..+...+
T Consensus 323 ~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P 383 (656)
T PRK15174 323 MYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARA 383 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCh
Confidence 2355566777776665444432 2222122222 4777777777665443
No 6
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.80 E-value=2.2e-17 Score=136.65 Aligned_cols=157 Identities=22% Similarity=0.202 Sum_probs=141.8
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHH
Q 024858 3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ 82 (261)
Q Consensus 3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA 82 (261)
.+..|++++|+..+.+++..+|++..++..+|.++..+|++++|++.+++++...|.+. .....++.+|...|++++|
T Consensus 41 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~~~g~~~~A 118 (234)
T TIGR02521 41 YLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNG--DVLNNYGTFLCQQGKYEQA 118 (234)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH--HHHHHHHHHHHHcccHHHH
Confidence 45689999999999999999999999999999999999999999999999999999843 3556689999999999999
Q ss_pred HHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhh
Q 024858 83 IEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACN 161 (261)
Q Consensus 83 ~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~ 161 (261)
+..+++++...+ .|.....+.++|.++...|++++|...|.+++..+|++.. +..
T Consensus 119 ~~~~~~~~~~~~------------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 174 (234)
T TIGR02521 119 MQQFEQAIEDPL------------------------YPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLE 174 (234)
T ss_pred HHHHHHHHhccc------------------------cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHH
Confidence 999999987521 1224567899999999999999999999999999999998 889
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 162 LGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 162 L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
+|.++...|++++|..++++++..
T Consensus 175 la~~~~~~~~~~~A~~~~~~~~~~ 198 (234)
T TIGR02521 175 LAELYYLRGQYKDARAYLERYQQT 198 (234)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999999986
No 7
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.80 E-value=1.8e-17 Score=135.96 Aligned_cols=157 Identities=23% Similarity=0.143 Sum_probs=144.7
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHH
Q 024858 3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ 82 (261)
Q Consensus 3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA 82 (261)
+|..||+..|...+++||+.||++..+|..++.+|..+|..+-|-+.|+++++++|++ ..+.|+.|..+..+|++++|
T Consensus 45 YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~--GdVLNNYG~FLC~qg~~~eA 122 (250)
T COG3063 45 YLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNN--GDVLNNYGAFLCAQGRPEEA 122 (250)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCc--cchhhhhhHHHHhCCChHHH
Confidence 5789999999999999999999999999999999999999999999999999999994 45677789999999999999
Q ss_pred HHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhh
Q 024858 83 IEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACN 161 (261)
Q Consensus 83 ~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~ 161 (261)
.+.|++++.. |. -|+.++++-|+|+|-.++|+++.|...|+++|+++|+++. ...
T Consensus 123 ~q~F~~Al~~-P~-----------------------Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~ 178 (250)
T COG3063 123 MQQFERALAD-PA-----------------------YGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLE 178 (250)
T ss_pred HHHHHHHHhC-CC-----------------------CCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHH
Confidence 9999999984 30 1345679999999999999999999999999999999998 889
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 162 LGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 162 L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
++....+.|+|-+|..++++....
T Consensus 179 ~a~~~~~~~~y~~Ar~~~~~~~~~ 202 (250)
T COG3063 179 LARLHYKAGDYAPARLYLERYQQR 202 (250)
T ss_pred HHHHHHhcccchHHHHHHHHHHhc
Confidence 999999999999999999998875
No 8
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.79 E-value=1.6e-17 Score=159.34 Aligned_cols=192 Identities=16% Similarity=0.087 Sum_probs=146.0
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHH---HcCCcHHHHHHHHHHHhcC---CchhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024858 13 IVLFWKAINAGDRVDSALKDMAVVMK---QLDRSEEAIEAIKSFRGLC---SKQSQESLDNVLIDLYKKCGKVEEQIEML 86 (261)
Q Consensus 13 ~~~~~~al~~~p~~~~al~~Lg~~~~---~~g~~~eAi~~~~~~~~~~---P~~~~~~~~~~L~~ly~~~g~~~eA~~~~ 86 (261)
...+...+..+|.....+..+|.... ..+++++|++.|++++..+ |. ....++.+|.+|..+|++++|+..|
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~--~a~a~~~lg~~~~~~g~~~eA~~~~ 354 (615)
T TIGR00990 277 PAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEK--EAIALNLRGTFKCLKGKHLEALADL 354 (615)
T ss_pred hhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChh--hHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34456677788888888888887654 4589999999999999864 55 3345677899999999999999999
Q ss_pred HHHHHhhcchh-hhcCcchHHHhhch------hhhh--hhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch
Q 024858 87 KRKLRLIYQGE-AFNGKPTKTARSHG------KKFQ--VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN 157 (261)
Q Consensus 87 ~~al~l~~~~~-~~~~~~~~~~~~~~------~~~~--~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~ 157 (261)
++++++.|... .+... .......+ ..+. +.+.|++++++.++|.++..+|++++|+..|++++.++|++.
T Consensus 355 ~kal~l~P~~~~~~~~l-a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~ 433 (615)
T TIGR00990 355 SKSIELDPRVTQSYIKR-ASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFI 433 (615)
T ss_pred HHHHHcCCCcHHHHHHH-HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCH
Confidence 99999876422 22100 00000001 1111 578899999999999999999999999999999999999999
Q ss_pred h-hhhHHHHHHHcCCHHHHHHHHHHHHhCCCCCCc----------chhhHHHHHHHHHHHH
Q 024858 158 K-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCE----------DGRTRKRAEELLLELE 207 (261)
Q Consensus 158 ~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~~~~~~----------~~~~~~~a~~~l~~l~ 207 (261)
. +.++|.++.++|++++|+..|++++...+..+. ..+.++.|...+....
T Consensus 434 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al 494 (615)
T TIGR00990 434 FSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAI 494 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 8 999999999999999999999999987332221 2345566666666543
No 9
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.78 E-value=2.9e-17 Score=163.12 Aligned_cols=179 Identities=12% Similarity=0.063 Sum_probs=144.3
Q ss_pred hhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHH
Q 024858 4 LVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQI 83 (261)
Q Consensus 4 ~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~ 83 (261)
...|++++|+..|++++...|.. .++..+|.++.+.|++++|+.+++++++.+|+.. .+...++..+...|++++|+
T Consensus 520 ~~~Gr~eeAi~~~rka~~~~p~~-~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~--~l~~~La~~l~~~Gr~~eAl 596 (987)
T PRK09782 520 YQVEDYATALAAWQKISLHDMSN-EDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDN--ALYWWLHAQRYIPGQPELAL 596 (987)
T ss_pred HHCCCHHHHHHHHHHHhccCCCc-HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccH--HHHHHHHHHHHhCCCHHHHH
Confidence 46899999999999988776664 4578899999999999999999999999998842 23333454455669999999
Q ss_pred HHHHHHHHhhcchhhhcCcchHHHhhchh------hhh--hhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 024858 84 EMLKRKLRLIYQGEAFNGKPTKTARSHGK------KFQ--VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPD 155 (261)
Q Consensus 84 ~~~~~al~l~~~~~~~~~~~~~~~~~~~~------~~~--~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~ 155 (261)
..|++++++.|....+.+. .......+. .+. +.+.|+++.++.++|.++..+|++++|+..|+++++++|+
T Consensus 597 ~~~~~AL~l~P~~~a~~~L-A~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~ 675 (987)
T PRK09782 597 NDLTRSLNIAPSANAYVAR-ATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPD 675 (987)
T ss_pred HHHHHHHHhCCCHHHHHHH-HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 9999999988753333210 011111111 121 6889999999999999999999999999999999999999
Q ss_pred chh-hhhHHHHHHHcCCHHHHHHHHHHHHhCC
Q 024858 156 ANK-ACNLGLCLIKRTRYNEARSVLEDVLYGR 186 (261)
Q Consensus 156 ~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~ 186 (261)
++. +.++|.++..+|++++|+..|++++...
T Consensus 676 ~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 676 DPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 999 9999999999999999999999999984
No 10
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.78 E-value=4.3e-17 Score=157.18 Aligned_cols=197 Identities=15% Similarity=0.053 Sum_probs=128.3
Q ss_pred hhcCCHHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHH-
Q 024858 4 LVQKDPEAAIVLFWKAINAGD-RVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEE- 81 (261)
Q Consensus 4 ~~~~~~~~A~~~~~~al~~~p-~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~e- 81 (261)
+..|++++|+..|++++..+| ........++.++...|++++|+..+++++..+|+++ ...+.+|.+|...|++++
T Consensus 188 ~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~--~~~~~Lg~~l~~~G~~~eA 265 (656)
T PRK15174 188 LNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGA--ALRRSLGLAYYQSGRSREA 265 (656)
T ss_pred HHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHcCCchhh
Confidence 456777777777777666654 2233334456666677777777777777777777632 344456777777777764
Q ss_pred ---HHHHHHHHHHhhcchh-hhcCcchHHHhhch------hhhh--hhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 024858 82 ---QIEMLKRKLRLIYQGE-AFNGKPTKTARSHG------KKFQ--VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKA 149 (261)
Q Consensus 82 ---A~~~~~~al~l~~~~~-~~~~~~~~~~~~~~------~~~~--~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~a 149 (261)
|+..|++++++.|... ++.. ........+ ..+. +.+.|+++.++.++|.+|.++|++++|+..|+++
T Consensus 266 ~~~A~~~~~~Al~l~P~~~~a~~~-lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~a 344 (656)
T PRK15174 266 KLQAAEHWRHALQFNSDNVRIVTL-YADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQL 344 (656)
T ss_pred HHHHHHHHHHHHhhCCCCHHHHHH-HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 6777777777654321 1110 000000000 0011 4556788889999999999999999999999999
Q ss_pred HhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchhhHHHHHHHHHH
Q 024858 150 QMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELLLE 205 (261)
Q Consensus 150 l~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~a~~~l~~ 205 (261)
+..+|++.. ...+|.++...|++++|+..|++++...+... +..++.+...+..
T Consensus 345 l~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~--~~~~~ea~~~~~~ 399 (656)
T PRK15174 345 AREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL--PQSFEEGLLALDG 399 (656)
T ss_pred HHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc--hhhHHHHHHHHHH
Confidence 999999887 66778999999999999999999998733222 3334445544444
No 11
>PRK12370 invasion protein regulator; Provisional
Probab=99.78 E-value=2.7e-17 Score=155.87 Aligned_cols=175 Identities=14% Similarity=-0.039 Sum_probs=142.8
Q ss_pred cCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHH
Q 024858 6 QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEM 85 (261)
Q Consensus 6 ~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~ 85 (261)
.+++++|+..++++++.+|+++.++..+|.++..+|++++|+..|+++++++|+++ ..+..+|.+|...|++++|+..
T Consensus 317 ~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~--~a~~~lg~~l~~~G~~~eAi~~ 394 (553)
T PRK12370 317 QNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISA--DIKYYYGWNLFMAGQLEEALQT 394 (553)
T ss_pred chHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHCCCHHHHHHH
Confidence 46689999999999999999999999999999999999999999999999999954 3556689999999999999999
Q ss_pred HHHHHHhhcchh-hhcCcchHHHhhchh------hhh--hhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 024858 86 LKRKLRLIYQGE-AFNGKPTKTARSHGK------KFQ--VSV-RQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPD 155 (261)
Q Consensus 86 ~~~al~l~~~~~-~~~~~~~~~~~~~~~------~~~--~~l-~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~ 155 (261)
++++++++|... +...... .....++ .+. +.. .|+++.++.++|.+|..+|++++|...++++....|+
T Consensus 395 ~~~Al~l~P~~~~~~~~~~~-~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~ 473 (553)
T PRK12370 395 INECLKLDPTRAAAGITKLW-ITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT 473 (553)
T ss_pred HHHHHhcCCCChhhHHHHHH-HHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch
Confidence 999999987532 1110000 0000111 111 222 4788999999999999999999999999999999999
Q ss_pred chh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 156 ANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 156 ~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
+.. +..|+.+|...| ++|...+++++..
T Consensus 474 ~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 474 GLIAVNLLYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred hHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence 888 888999999988 4888888887774
No 12
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.77 E-value=1.1e-17 Score=131.50 Aligned_cols=127 Identities=8% Similarity=-0.105 Sum_probs=109.4
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 024858 12 AIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLR 91 (261)
Q Consensus 12 A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~ 91 (261)
-+.+|+++++.+|++ +..+|.++.+.|++++|+..|++++..+|.+ ...+..+|.++...|++++|+..|+++++
T Consensus 12 ~~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~--~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 12 PEDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWS--WRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc--HHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 467899999999886 5568999999999999999999999999984 34566689999999999999999999988
Q ss_pred hhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHc
Q 024858 92 LIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKR 169 (261)
Q Consensus 92 l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~ 169 (261)
+. |+++.+++++|.++..+|++++|+..|++++.+.|+++. +.++|.+....
T Consensus 87 l~--------------------------p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 87 LD--------------------------ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred cC--------------------------CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 74 467789999999999999999999999999999999998 77888776543
No 13
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.76 E-value=1.6e-16 Score=157.91 Aligned_cols=230 Identities=14% Similarity=0.069 Sum_probs=171.3
Q ss_pred hcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHH
Q 024858 5 VQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIE 84 (261)
Q Consensus 5 ~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~ 84 (261)
..+++++|+..|.+++...|+.. ....+|.++.+.|++++|+..++++....|.+ .. ...+|.++.+.|++++|+.
T Consensus 488 ~~~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~--~a-~~~la~all~~Gd~~eA~~ 563 (987)
T PRK09782 488 RDTLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMSN--ED-LLAAANTAQAAGNGAARDR 563 (987)
T ss_pred HhCCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCCc--HH-HHHHHHHHHHCCCHHHHHH
Confidence 34789999999999999999754 46667888889999999999999988776653 22 3457888999999999999
Q ss_pred HHHHHHHhhcchhhhcCcchHHHhhchh------hhh--hhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 024858 85 MLKRKLRLIYQGEAFNGKPTKTARSHGK------KFQ--VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDA 156 (261)
Q Consensus 85 ~~~~al~l~~~~~~~~~~~~~~~~~~~~------~~~--~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~ 156 (261)
.|++++++.|................+. .+. +.+.|+ +.++.++|.++.++|++++|+..|++++.++|++
T Consensus 564 ~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~ 642 (987)
T PRK09782 564 WLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNN 642 (987)
T ss_pred HHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 9999999865332111000000000011 111 578897 8999999999999999999999999999999999
Q ss_pred hh-hhhHHHHHHHcCCHHHHHHHHHHHHhCCCCCCc----------chhhHHHHHHHHHHHHhcCC-CCchhhhcccch-
Q 024858 157 NK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCE----------DGRTRKRAEELLLELESKQP-PPDLSDLLGLNL- 223 (261)
Q Consensus 157 ~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~~~~~~----------~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~~~~- 223 (261)
+. +.++|.++..+|++++|+.+|++++...|.++. ..+.++.|...+.......| .+...+.+|..+
T Consensus 643 ~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~ 722 (987)
T PRK09782 643 SNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQ 722 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHH
Confidence 99 999999999999999999999999998432221 24556677777777544444 577788888776
Q ss_pred -hHHHHHHHHHHHHhhc
Q 024858 224 -EDEFVNGLEEMVRVWA 239 (261)
Q Consensus 224 -~d~~~~~~~~~l~~~~ 239 (261)
..+|-...+.+-++|.
T Consensus 723 ~~~~~~~a~~~~~r~~~ 739 (987)
T PRK09782 723 QRFNFRRLHEEVGRRWT 739 (987)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 2344444444544553
No 14
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.75 E-value=4.4e-16 Score=140.77 Aligned_cols=233 Identities=17% Similarity=0.132 Sum_probs=157.4
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCch--hHHHHHHHHHHHHHHcCCHH
Q 024858 3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ--SQESLDNVLIDLYKKCGKVE 80 (261)
Q Consensus 3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~--~~~~~~~~L~~ly~~~g~~~ 80 (261)
.+..|++++|+..|++++..+|++..++..+|.++..+|++++|+..+++++...+.. ........+|.+|...|+++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 3567999999999999999999999999999999999999999999999988753321 12234567899999999999
Q ss_pred HHHHHHHHHHHhhcchh-hhcCcchHHHhhchh------hhh--hhcCCCc-----HHHHHHHHHHHHHcCCHHHHHHHH
Q 024858 81 EQIEMLKRKLRLIYQGE-AFNGKPTKTARSHGK------KFQ--VSVRQET-----SRLLGNLAWAYMQKTNFMAAEVVY 146 (261)
Q Consensus 81 eA~~~~~~al~l~~~~~-~~~~~~~~~~~~~~~------~~~--~~l~p~~-----~~~~~~Lg~~~~~~g~~~eA~~~~ 146 (261)
+|+..|+++++..+... ++.. ........++ .+. +...|++ ...+.++|.++..+|++++|+..|
T Consensus 125 ~A~~~~~~~l~~~~~~~~~~~~-la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 203 (389)
T PRK11788 125 RAEELFLQLVDEGDFAEGALQQ-LLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALL 203 (389)
T ss_pred HHHHHHHHHHcCCcchHHHHHH-HHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 99999999998644321 1110 0000000000 111 2233433 224567888888888888888888
Q ss_pred HHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhCCCCCCc-----------chhhHHHHHHHHHHHHhcCCCCc
Q 024858 147 QKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCE-----------DGRTRKRAEELLLELESKQPPPD 214 (261)
Q Consensus 147 ~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~~~~~~-----------~~~~~~~a~~~l~~l~~~~~~~~ 214 (261)
+++++.+|++.. +..+|.++...|++++|+.++++++..++.... ..+..+.+...+..+....|+..
T Consensus 204 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~ 283 (389)
T PRK11788 204 KKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGAD 283 (389)
T ss_pred HHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch
Confidence 888888888887 778888888888888888888888875221100 12345556666666544444433
Q ss_pred hhhhcccch-----hHHHHHHHHHHHH
Q 024858 215 LSDLLGLNL-----EDEFVNGLEEMVR 236 (261)
Q Consensus 215 ~~~~~~~~~-----~d~~~~~~~~~l~ 236 (261)
....++..+ ++++...|...+.
T Consensus 284 ~~~~la~~~~~~g~~~~A~~~l~~~l~ 310 (389)
T PRK11788 284 LLLALAQLLEEQEGPEAAQALLREQLR 310 (389)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 333334333 3455555555443
No 15
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.75 E-value=2.4e-16 Score=160.84 Aligned_cols=182 Identities=14% Similarity=0.124 Sum_probs=135.0
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHH------------HHHHHHH
Q 024858 3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQE------------SLDNVLI 70 (261)
Q Consensus 3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~------------~~~~~L~ 70 (261)
.+..|++++|+..|+++++.+|++++++..||.++.++|++++|+..++++++.+|++... .....++
T Consensus 279 ~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g 358 (1157)
T PRK11447 279 AVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQG 358 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHH
Confidence 4567999999999999999999999999999999999999999999999999999974211 1123457
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhcchh-hhcCcchHHHhhch------hhhh--hhcCCCcHHHHHHHHHHH--------
Q 024858 71 DLYKKCGKVEEQIEMLKRKLRLIYQGE-AFNGKPTKTARSHG------KKFQ--VSVRQETSRLLGNLAWAY-------- 133 (261)
Q Consensus 71 ~ly~~~g~~~eA~~~~~~al~l~~~~~-~~~~~~~~~~~~~~------~~~~--~~l~p~~~~~~~~Lg~~~-------- 133 (261)
.++.+.|++++|+..|++++++.|... ++.+ ........+ ..+. +.+.|+++.++.+++.+|
T Consensus 359 ~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~-Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A 437 (1157)
T PRK11447 359 DAALKANNLAQAERLYQQARQVDNTDSYAVLG-LGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKA 437 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHH
Confidence 888999999999999999999865322 1110 001111111 1111 466677777777666554
Q ss_pred ----------------------------------HHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHH
Q 024858 134 ----------------------------------MQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSV 178 (261)
Q Consensus 134 ----------------------------------~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~ 178 (261)
..+|++++|+..|+++++++|+++. ++.+|.+|..+|++++|+..
T Consensus 438 ~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~ 517 (1157)
T PRK11447 438 LAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADAL 517 (1157)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 2467777777778888888887777 77777778888888888888
Q ss_pred HHHHHhC
Q 024858 179 LEDVLYG 185 (261)
Q Consensus 179 ~~~~l~~ 185 (261)
|++++..
T Consensus 518 l~~al~~ 524 (1157)
T PRK11447 518 MRRLAQQ 524 (1157)
T ss_pred HHHHHHc
Confidence 8777775
No 16
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.74 E-value=1.3e-16 Score=139.87 Aligned_cols=180 Identities=11% Similarity=-0.056 Sum_probs=133.6
Q ss_pred chhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHH
Q 024858 2 VQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEE 81 (261)
Q Consensus 2 ~~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~e 81 (261)
+....|++++|+..|.++++.+|+++.++.++|.++...|++++|++.++++++++|++. .....+|.+|...|++++
T Consensus 73 ~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~--~a~~~lg~~l~~~g~~~e 150 (296)
T PRK11189 73 LYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN--YAYLNRGIALYYGGRYEL 150 (296)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHCCCHHH
Confidence 345679999999999999999999999999999999999999999999999999999953 345568999999999999
Q ss_pred HHHHHHHHHHhhcchhhhcCcchHHHhhch------hhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH------
Q 024858 82 QIEMLKRKLRLIYQGEAFNGKPTKTARSHG------KKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKA------ 149 (261)
Q Consensus 82 A~~~~~~al~l~~~~~~~~~~~~~~~~~~~------~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~a------ 149 (261)
|++.+++++++.|.+.... .........+ ..+...+...+++.|. .+.++...|+..++ ..+..+
T Consensus 151 A~~~~~~al~~~P~~~~~~-~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~ 227 (296)
T PRK11189 151 AQDDLLAFYQDDPNDPYRA-LWLYLAESKLDPKQAKENLKQRYEKLDKEQWG-WNIVEFYLGKISEE-TLMERLKAGATD 227 (296)
T ss_pred HHHHHHHHHHhCCCCHHHH-HHHHHHHccCCHHHHHHHHHHHHhhCCccccH-HHHHHHHccCCCHH-HHHHHHHhcCCC
Confidence 9999999999876432110 0000000000 0111111222233333 46666777777554 233333
Q ss_pred -HhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhCC
Q 024858 150 -QMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGR 186 (261)
Q Consensus 150 -l~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~ 186 (261)
.+++|+... +++||.++.++|++++|+.+|++++..+
T Consensus 228 ~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 228 NTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred cHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 366677777 9999999999999999999999999983
No 17
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.74 E-value=4.9e-17 Score=147.87 Aligned_cols=182 Identities=17% Similarity=0.138 Sum_probs=145.5
Q ss_pred chhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHH
Q 024858 2 VQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEE 81 (261)
Q Consensus 2 ~~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~e 81 (261)
..+.+|++.+|.-+|+.|++.+|.+.++|..||.+....+.-..||.+++++++++|+ +..+...|+..|...|--.+
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~--NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPT--NLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc--cHHHHHHHHHHHhhhhhHHH
Confidence 4678999999999999999999999999999999999999999999999999999999 45567789999999999999
Q ss_pred HHHHHHHHHHhhcchhhhc-----Cc-------chHHHhhch-hhhh--hhcCC--CcHHHHHHHHHHHHHcCCHHHHHH
Q 024858 82 QIEMLKRKLRLIYQGEAFN-----GK-------PTKTARSHG-KKFQ--VSVRQ--ETSRLLGNLAWAYMQKTNFMAAEV 144 (261)
Q Consensus 82 A~~~~~~al~l~~~~~~~~-----~~-------~~~~~~~~~-~~~~--~~l~p--~~~~~~~~Lg~~~~~~g~~~eA~~ 144 (261)
|..++.+-++..|+-.... .. .......+- ..|. ....| .++++...||.+|...|+|+.|+.
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 9999999998765321111 00 000000000 0111 23345 567888888888888888888888
Q ss_pred HHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 145 VYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 145 ~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
+|+.||..+|++.. |..||-++....+.+||+..|.+++..
T Consensus 452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL 493 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQL 493 (579)
T ss_pred HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc
Confidence 88888888888888 888888888888888888888888887
No 18
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.73 E-value=1.6e-15 Score=148.57 Aligned_cols=180 Identities=18% Similarity=0.128 Sum_probs=125.4
Q ss_pred hhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHH
Q 024858 4 LVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQI 83 (261)
Q Consensus 4 ~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~ 83 (261)
...|++++|+..|.++++.+|++..++..+|.++...|++++|++.+++++..+|++ ......++.+|...|++++|+
T Consensus 476 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~ 553 (899)
T TIGR02917 476 LGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKN--LRAILALAGLYLRTGNEEEAV 553 (899)
T ss_pred HhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCc--HHHHHHHHHHHHHcCCHHHHH
Confidence 445677777777777777777777777777777777777777777777777777763 234445677777777777777
Q ss_pred HHHHHHHHhhcchhhhcCcchHHHhhchh------hhh--hhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 024858 84 EMLKRKLRLIYQGEAFNGKPTKTARSHGK------KFQ--VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPD 155 (261)
Q Consensus 84 ~~~~~al~l~~~~~~~~~~~~~~~~~~~~------~~~--~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~ 155 (261)
..++++++..|................+. .+. +...|+++.++..+|.+|...|++++|+..|+++++.+|+
T Consensus 554 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 633 (899)
T TIGR02917 554 AWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD 633 (899)
T ss_pred HHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 77777776644321100000000000110 111 3456788888889999999999999999999999998888
Q ss_pred chh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 156 ANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 156 ~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
++. +..+|.++...|++++|+.+|++++..
T Consensus 634 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 664 (899)
T TIGR02917 634 SALALLLLADAYAVMKNYAKAITSLKRALEL 664 (899)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 888 888899999999999999999888886
No 19
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.72 E-value=4.8e-16 Score=152.31 Aligned_cols=178 Identities=16% Similarity=0.163 Sum_probs=118.4
Q ss_pred hhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHH
Q 024858 4 LVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQI 83 (261)
Q Consensus 4 ~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~ 83 (261)
...|++++|+..+.......|..+..+..+|.++...|++++|++.|++++...|++ . ....++.+|.+.|++++|+
T Consensus 680 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~--~-~~~~l~~~~~~~g~~~~A~ 756 (899)
T TIGR02917 680 LAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS--Q-NAIKLHRALLASGNTAEAV 756 (899)
T ss_pred HHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc--h-HHHHHHHHHHHCCCHHHHH
Confidence 456777777777777777777777777777777777777777777777777777763 2 2334667777777777777
Q ss_pred HHHHHHHHhhcchhhhcCcchHHHhhch------hhhh--hhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 024858 84 EMLKRKLRLIYQGEAFNGKPTKTARSHG------KKFQ--VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPD 155 (261)
Q Consensus 84 ~~~~~al~l~~~~~~~~~~~~~~~~~~~------~~~~--~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~ 155 (261)
+.++++++..|................+ ..+. +...|+++.++.++|+++...|+ .+|+..+++++.+.|+
T Consensus 757 ~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~ 835 (899)
T TIGR02917 757 KTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPN 835 (899)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCC
Confidence 7777777765432211000000000001 1111 35567777777788888888777 7788888888888887
Q ss_pred chh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 156 ANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 156 ~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
++. +.++|.++...|++++|+.+|++++..
T Consensus 836 ~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 866 (899)
T TIGR02917 836 IPAILDTLGWLLVEKGEADRALPLLRKAVNI 866 (899)
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 777 777788888888888888888887776
No 20
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.71 E-value=1e-16 Score=147.74 Aligned_cols=179 Identities=16% Similarity=0.132 Sum_probs=146.1
Q ss_pred HHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcch
Q 024858 17 WKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQG 96 (261)
Q Consensus 17 ~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~ 96 (261)
+..+..+|+.|++|..+|.++.-|++++.||+.+++++.++|+.++ .+-++|.=+.....+|+|...|++||.++|
T Consensus 411 q~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faY--ayTLlGhE~~~~ee~d~a~~~fr~Al~~~~-- 486 (638)
T KOG1126|consen 411 QDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAY--AYTLLGHESIATEEFDKAMKSFRKALGVDP-- 486 (638)
T ss_pred HHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccch--hhhhcCChhhhhHHHHhHHHHHHhhhcCCc--
Confidence 3456789999999999999999999999999999999999998543 455678778889999999999999998754
Q ss_pred hhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHH
Q 024858 97 EAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEA 175 (261)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA 175 (261)
.+-.+|+.||.+|.++++++.|+-+|++|++++|.+.. .+.+|.++.+.|+.|+|
T Consensus 487 ------------------------rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~A 542 (638)
T KOG1126|consen 487 ------------------------RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKA 542 (638)
T ss_pred ------------------------hhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHH
Confidence 23468999999999999999999999999999999998 88999999999999999
Q ss_pred HHHHHHHHhCCCCCCc----------chhhHHHHHHHHHHHHhcCCC-Cchhhhcccch
Q 024858 176 RSVLEDVLYGRIPGCE----------DGRTRKRAEELLLELESKQPP-PDLSDLLGLNL 223 (261)
Q Consensus 176 ~~~~~~~l~~~~~~~~----------~~~~~~~a~~~l~~l~~~~~~-~~~~~~~~~~~ 223 (261)
+..|++|+..++.++. -...++.|...|+++....|+ +....-+|.++
T Consensus 543 L~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~ 601 (638)
T KOG1126|consen 543 LQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIY 601 (638)
T ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHH
Confidence 9999999998544431 145566677777777765554 44555566655
No 21
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.71 E-value=1.1e-16 Score=147.48 Aligned_cols=154 Identities=21% Similarity=0.163 Sum_probs=144.3
Q ss_pred hhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHH
Q 024858 4 LVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQI 83 (261)
Q Consensus 4 ~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~ 83 (261)
..++|.+.|+++|.+|+.+||++..++..+|.=+.....+|.|...|+.++..+|++ -.++.-||.+|.++++++.|.
T Consensus 432 SLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rh--YnAwYGlG~vy~Kqek~e~Ae 509 (638)
T KOG1126|consen 432 SLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRH--YNAWYGLGTVYLKQEKLEFAE 509 (638)
T ss_pred hhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchh--hHHHHhhhhheeccchhhHHH
Confidence 468999999999999999999999999999999999999999999999999999994 445666999999999999999
Q ss_pred HHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhH
Q 024858 84 EMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNL 162 (261)
Q Consensus 84 ~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L 162 (261)
-.|++|++++| .+.-+...+|.++.+.|+.++|+.+|++|+.+||.++- .++.
T Consensus 510 ~~fqkA~~INP--------------------------~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 510 FHFQKAVEINP--------------------------SNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred HHHHhhhcCCc--------------------------cchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 99999999865 45568899999999999999999999999999999998 9999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhC
Q 024858 163 GLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 163 ~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
|.++...|++++|...++++...
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~ 586 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKEL 586 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHh
Confidence 99999999999999999998887
No 22
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=6.5e-16 Score=137.46 Aligned_cols=154 Identities=18% Similarity=0.156 Sum_probs=141.3
Q ss_pred hhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHH
Q 024858 4 LVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQI 83 (261)
Q Consensus 4 ~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~ 83 (261)
...++.++|+.+|++|+++||+...+|..||.=+..++....||+.|++++.++|.| -..+.-||..|.-.+-+.=|+
T Consensus 341 Slr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~D--yRAWYGLGQaYeim~Mh~YaL 418 (559)
T KOG1155|consen 341 SLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRD--YRAWYGLGQAYEIMKMHFYAL 418 (559)
T ss_pred HHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchh--HHHHhhhhHHHHHhcchHHHH
Confidence 456788999999999999999999999999999999999999999999999999985 334556999999999999999
Q ss_pred HHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhH
Q 024858 84 EMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNL 162 (261)
Q Consensus 84 ~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L 162 (261)
-+|++|+++ +|+++.+|..||.||.+.++.+||+++|++|+...-.+.. ...|
T Consensus 419 yYfqkA~~~--------------------------kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~L 472 (559)
T KOG1155|consen 419 YYFQKALEL--------------------------KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRL 472 (559)
T ss_pred HHHHHHHhc--------------------------CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHH
Confidence 999999886 4678999999999999999999999999999999888888 8899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhC
Q 024858 163 GLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 163 ~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
|.+|.+.++..+|..+|++-+..
T Consensus 473 akLye~l~d~~eAa~~yek~v~~ 495 (559)
T KOG1155|consen 473 AKLYEELKDLNEAAQYYEKYVEV 495 (559)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHH
Confidence 99999999999999999998884
No 23
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.70 E-value=3.3e-15 Score=135.00 Aligned_cols=207 Identities=16% Similarity=0.130 Sum_probs=153.9
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCCh----HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCC
Q 024858 3 QLVQKDPEAAIVLFWKAINAGDRV----DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGK 78 (261)
Q Consensus 3 ~~~~~~~~~A~~~~~~al~~~p~~----~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~ 78 (261)
....|++++|+..+++++..++.. ..++..+|.++...|++++|+..+++++...|.+ ....+.++.+|.+.|+
T Consensus 79 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~--~~~~~~la~~~~~~g~ 156 (389)
T PRK11788 79 FRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFA--EGALQQLLEIYQQEKD 156 (389)
T ss_pred HHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcch--HHHHHHHHHHHHHhch
Confidence 467899999999999988854432 3568889999999999999999999999888873 3456678999999999
Q ss_pred HHHHHHHHHHHHHhhcchhh-----hcCcchHHHhhch------hhhh--hhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 024858 79 VEEQIEMLKRKLRLIYQGEA-----FNGKPTKTARSHG------KKFQ--VSVRQETSRLLGNLAWAYMQKTNFMAAEVV 145 (261)
Q Consensus 79 ~~eA~~~~~~al~l~~~~~~-----~~~~~~~~~~~~~------~~~~--~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~ 145 (261)
+++|++.++++++..+.... +...........+ ..+. +.+.|++..++..+|.+|..+|++++|+..
T Consensus 157 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 236 (389)
T PRK11788 157 WQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEA 236 (389)
T ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999887543210 0000000000011 1111 456788889999999999999999999999
Q ss_pred HHHHHhhCCCchh--hhhHHHHHHHcCCHHHHHHHHHHHHhCCCCCCc----------chhhHHHHHHHHHHHHhcCCC
Q 024858 146 YQKAQMIDPDANK--ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCE----------DGRTRKRAEELLLELESKQPP 212 (261)
Q Consensus 146 ~~~al~~~P~~~~--~~~L~~~l~~~g~~~eA~~~~~~~l~~~~~~~~----------~~~~~~~a~~~l~~l~~~~~~ 212 (261)
|++++..+|++.. +..++.+|...|++++|+..+++++...+ ++. ..+.++.|...+.......|+
T Consensus 237 ~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p-~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~ 314 (389)
T PRK11788 237 LERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYP-GADLLLALAQLLEEQEGPEAAQALLREQLRRHPS 314 (389)
T ss_pred HHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcC
Confidence 9999999998754 67899999999999999999999998732 221 134556677777654443443
No 24
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.70 E-value=8.1e-16 Score=120.88 Aligned_cols=109 Identities=15% Similarity=0.091 Sum_probs=99.3
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHH
Q 024858 47 IEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLL 126 (261)
Q Consensus 47 i~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~ 126 (261)
..+++++++++|++ +. .+|.++...|++++|+..|++++.+. |++..++
T Consensus 13 ~~~~~~al~~~p~~----~~-~~g~~~~~~g~~~~A~~~~~~al~~~--------------------------P~~~~a~ 61 (144)
T PRK15359 13 EDILKQLLSVDPET----VY-ASGYASWQEGDYSRAVIDFSWLVMAQ--------------------------PWSWRAH 61 (144)
T ss_pred HHHHHHHHHcCHHH----HH-HHHHHHHHcCCHHHHHHHHHHHHHcC--------------------------CCcHHHH
Confidence 46789999999983 22 36888899999999999999999874 4678899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhCC
Q 024858 127 GNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGR 186 (261)
Q Consensus 127 ~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~ 186 (261)
.++|.++..+|++++|+..|++++.++|+++. ++++|.++..+|++++|+..|++++...
T Consensus 62 ~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 62 IALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999 9999999999999999999999999983
No 25
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.70 E-value=2.2e-15 Score=132.17 Aligned_cols=150 Identities=13% Similarity=0.014 Sum_probs=128.3
Q ss_pred CCHHHHHHHHHHHHHc---CC-ChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHH
Q 024858 7 KDPEAAIVLFWKAINA---GD-RVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ 82 (261)
Q Consensus 7 ~~~~~A~~~~~~al~~---~p-~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA 82 (261)
+..+.++.-+.++|.. +| ..+..++.+|.++...|++++|+..|+++++++|+++ ..++.+|.+|...|++++|
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~--~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMA--DAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCH--HHHHHHHHHHHHCCCHHHH
Confidence 4567789999999963 33 3478899999999999999999999999999999953 4667799999999999999
Q ss_pred HHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhh
Q 024858 83 IEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACN 161 (261)
Q Consensus 83 ~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~ 161 (261)
++.|++++++. |++..++.++|.++...|++++|+..|+++++++|+++. ...
T Consensus 118 ~~~~~~Al~l~--------------------------P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~ 171 (296)
T PRK11189 118 YEAFDSVLELD--------------------------PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALW 171 (296)
T ss_pred HHHHHHHHHhC--------------------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 99999999974 467789999999999999999999999999999999985 222
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 162 LGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 162 L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
..+....+++++|+..+++.+..
T Consensus 172 -~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 172 -LYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred -HHHHHccCCHHHHHHHHHHHHhh
Confidence 23345678999999999877654
No 26
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.69 E-value=3.9e-15 Score=123.13 Aligned_cols=158 Identities=13% Similarity=-0.018 Sum_probs=137.3
Q ss_pred chhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHH
Q 024858 2 VQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEE 81 (261)
Q Consensus 2 ~~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~e 81 (261)
+....|++++|+.+|++++..+|.++.++.++|.++..+|++++|+..+++++...+..........++.+|...|++++
T Consensus 74 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 153 (234)
T TIGR02521 74 YYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDK 153 (234)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHH
Confidence 34568999999999999999999999999999999999999999999999999864321122345558999999999999
Q ss_pred HHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hh
Q 024858 82 QIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-AC 160 (261)
Q Consensus 82 A~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~ 160 (261)
|+..++++++..| +++.++..+|.++..+|++++|...+++++...|+++. +.
T Consensus 154 A~~~~~~~~~~~~--------------------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 207 (234)
T TIGR02521 154 AEKYLTRALQIDP--------------------------QRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLW 207 (234)
T ss_pred HHHHHHHHHHhCc--------------------------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 9999999998743 45678899999999999999999999999999998887 77
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 161 NLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 161 ~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
.++.++...|+.++|..+.+.+...
T Consensus 208 ~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 208 LGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 8899999999999999988876653
No 27
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.69 E-value=6.1e-15 Score=150.58 Aligned_cols=231 Identities=12% Similarity=0.044 Sum_probs=169.3
Q ss_pred hhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHH
Q 024858 4 LVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQI 83 (261)
Q Consensus 4 ~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~ 83 (261)
+..|++++|+.+|+++++.+|+++.++..+|.++.++|++++|+..++++++..|+++. ....++.++.+.|++++|+
T Consensus 472 ~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~--~~~a~al~l~~~~~~~~Al 549 (1157)
T PRK11447 472 ENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPE--QVYAYGLYLSGSDRDRAAL 549 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH--HHHHHHHHHHhCCCHHHHH
Confidence 35799999999999999999999999999999999999999999999999999998543 3445677788999999999
Q ss_pred HHHHHHHHhhcchh--hhcC--------cchHHHhhchhh----hhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 024858 84 EMLKRKLRLIYQGE--AFNG--------KPTKTARSHGKK----FQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKA 149 (261)
Q Consensus 84 ~~~~~al~l~~~~~--~~~~--------~~~~~~~~~~~~----~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~a 149 (261)
..++++........ .+.. .........+.. -.+...|+++.++.+||.+|.++|++++|+..|+++
T Consensus 550 ~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~a 629 (1157)
T PRK11447 550 AHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRV 629 (1157)
T ss_pred HHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99987543211000 0000 000000011110 114567899999999999999999999999999999
Q ss_pred HhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhCCCCCCc----------chhhHHHHHHHHHHHHhcCCC-Cc---
Q 024858 150 QMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCE----------DGRTRKRAEELLLELESKQPP-PD--- 214 (261)
Q Consensus 150 l~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~~~~~~----------~~~~~~~a~~~l~~l~~~~~~-~~--- 214 (261)
++.+|+++. +.+++.+|...|++++|+.++++++...+..+. ..+.++.|.+.+..+....++ +.
T Consensus 630 l~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~ 709 (1157)
T PRK11447 630 LTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSME 709 (1157)
T ss_pred HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchh
Confidence 999999999 999999999999999999999999886322211 245566777777776544322 11
Q ss_pred ---hhhhcccch-----hHHHHHHHHHHHH
Q 024858 215 ---LSDLLGLNL-----EDEFVNGLEEMVR 236 (261)
Q Consensus 215 ---~~~~~~~~~-----~d~~~~~~~~~l~ 236 (261)
.....+..+ .++.++.|+..+.
T Consensus 710 ~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 710 SALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 111112222 4677777777764
No 28
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.68 E-value=5.6e-16 Score=134.63 Aligned_cols=180 Identities=20% Similarity=0.199 Sum_probs=88.2
Q ss_pred hhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHH
Q 024858 4 LVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQI 83 (261)
Q Consensus 4 ~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~ 83 (261)
+..+++++|...++++.+..+ ++..+..+..++...|+++++...++++....+..........+|.++.+.|++++|+
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~ 166 (280)
T PF13429_consen 88 LQDGDPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKAL 166 (280)
T ss_dssp -------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHH
T ss_pred ccccccccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 467888889988888887554 4566777778888889999999998887764421112345566888899999999999
Q ss_pred HHHHHHHHhhcchhh-hcC------cchHHHhhchhhhh--hhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 024858 84 EMLKRKLRLIYQGEA-FNG------KPTKTARSHGKKFQ--VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDP 154 (261)
Q Consensus 84 ~~~~~al~l~~~~~~-~~~------~~~~~~~~~~~~~~--~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P 154 (261)
..|++++++.|.+.. .+. ...+... ....+. ....|+++.++..+|.+|..+|++++|+.+|++++..+|
T Consensus 167 ~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~-~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p 245 (280)
T PF13429_consen 167 RDYRKALELDPDDPDARNALAWLLIDMGDYDE-AREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP 245 (280)
T ss_dssp HHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHH-HHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCChHH-HHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccc
Confidence 999999998775321 110 0000000 000111 122367778889999999999999999999999999999
Q ss_pred Cchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 155 DANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 155 ~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
+++. ..++|.++...|+.++|..++++++..
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp T-HHHHHHHHHHHT------------------
T ss_pred cccccccccccccccccccccccccccccccc
Confidence 9998 889999999999999999999988763
No 29
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=5.8e-15 Score=131.45 Aligned_cols=154 Identities=20% Similarity=0.146 Sum_probs=135.3
Q ss_pred hhcCCHHHHHHHHHHHHHcCCCh---HHHHHH-------------------------------HHHHHHHcCCcHHHHHH
Q 024858 4 LVQKDPEAAIVLFWKAINAGDRV---DSALKD-------------------------------MAVVMKQLDRSEEAIEA 49 (261)
Q Consensus 4 ~~~~~~~~A~~~~~~al~~~p~~---~~al~~-------------------------------Lg~~~~~~g~~~eAi~~ 49 (261)
-...|+++|+..|+.+.+.+|=. -+.+.+ .|.-|.-.++++.|+.+
T Consensus 273 y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~Y 352 (559)
T KOG1155|consen 273 YNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMY 352 (559)
T ss_pred hhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHH
Confidence 34689999999999999988842 111111 56666778899999999
Q ss_pred HHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHH
Q 024858 50 IKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNL 129 (261)
Q Consensus 50 ~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~L 129 (261)
++++++++|+ ...++.+.|.=|.+++....||+.|++|++++| -+-++|+.|
T Consensus 353 FkRALkLNp~--~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p--------------------------~DyRAWYGL 404 (559)
T KOG1155|consen 353 FKRALKLNPK--YLSAWTLMGHEYVEMKNTHAAIESYRRAVDINP--------------------------RDYRAWYGL 404 (559)
T ss_pred HHHHHhcCcc--hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCc--------------------------hhHHHHhhh
Confidence 9999999999 455677789999999999999999999999865 345799999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 130 AWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 130 g~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
|.+|.-++.+.=|+-+|++|+.+.|++.. |..||.||.+.++.+||+..|++++..
T Consensus 405 GQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~ 461 (559)
T KOG1155|consen 405 GQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILL 461 (559)
T ss_pred hHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999 999999999999999999999999997
No 30
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.66 E-value=5.2e-15 Score=122.35 Aligned_cols=149 Identities=15% Similarity=0.114 Sum_probs=120.3
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHH
Q 024858 3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ 82 (261)
Q Consensus 3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA 82 (261)
.+.-|+++....+.++.. +|.. -+...++.++++..++++++.+|+++ ..+..||.+|...|++++|
T Consensus 26 Y~~~g~~~~v~~~~~~~~--~~~~---------~~~~~~~~~~~i~~l~~~L~~~P~~~--~~w~~Lg~~~~~~g~~~~A 92 (198)
T PRK10370 26 YLLSPKWQAVRAEYQRLA--DPLH---------QFASQQTPEAQLQALQDKIRANPQNS--EQWALLGEYYLWRNDYDNA 92 (198)
T ss_pred HHHcchHHHHHHHHHHHh--Cccc---------cccCchhHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHCCCHHHH
Confidence 455677777666653321 2221 11236788999999999999999954 4566799999999999999
Q ss_pred HHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHH-HHcCC--HHHHHHHHHHHHhhCCCchh-
Q 024858 83 IEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAY-MQKTN--FMAAEVVYQKAQMIDPDANK- 158 (261)
Q Consensus 83 ~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~-~~~g~--~~eA~~~~~~al~~~P~~~~- 158 (261)
+.+|++++++. |++++++.++|.++ .+.|+ +++|...++++++++|++..
T Consensus 93 ~~a~~~Al~l~--------------------------P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~a 146 (198)
T PRK10370 93 LLAYRQALQLR--------------------------GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTA 146 (198)
T ss_pred HHHHHHHHHhC--------------------------CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhH
Confidence 99999999974 56788999999975 77787 59999999999999999999
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 024858 159 ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGC 190 (261)
Q Consensus 159 ~~~L~~~l~~~g~~~eA~~~~~~~l~~~~~~~ 190 (261)
+.+||.++.++|++++|+..+++++...+++.
T Consensus 147 l~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 147 LMLLASDAFMQADYAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 99999999999999999999999999854443
No 31
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.66 E-value=1.3e-14 Score=139.45 Aligned_cols=137 Identities=12% Similarity=0.069 Sum_probs=127.6
Q ss_pred HcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhc
Q 024858 21 NAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFN 100 (261)
Q Consensus 21 ~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~ 100 (261)
..-|..++++.+||.+..++|+++||...++.++.+.|++ ..+...++.++.+.+++++|...+++++...
T Consensus 80 ~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~--~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~------- 150 (694)
T PRK15179 80 RRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDS--SEAFILMLRGVKRQQGIEAGRAEIELYFSGG------- 150 (694)
T ss_pred HhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc--HHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-------
Confidence 4568889999999999999999999999999999999994 3455668999999999999999999999874
Q ss_pred CcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHH
Q 024858 101 GKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVL 179 (261)
Q Consensus 101 ~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~ 179 (261)
|+++.+++++|.++.+.|++++|+.+|++++..+|+++. +.++|.++.+.|+.++|...|
T Consensus 151 -------------------p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~ 211 (694)
T PRK15179 151 -------------------SSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVL 211 (694)
T ss_pred -------------------CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 578899999999999999999999999999999999999 999999999999999999999
Q ss_pred HHHHhC
Q 024858 180 EDVLYG 185 (261)
Q Consensus 180 ~~~l~~ 185 (261)
++++..
T Consensus 212 ~~a~~~ 217 (694)
T PRK15179 212 QAGLDA 217 (694)
T ss_pred HHHHHh
Confidence 999996
No 32
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.65 E-value=5.9e-15 Score=122.03 Aligned_cols=125 Identities=18% Similarity=0.196 Sum_probs=113.7
Q ss_pred cCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHH-HHHcCC--HHHH
Q 024858 6 QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDL-YKKCGK--VEEQ 82 (261)
Q Consensus 6 ~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~l-y~~~g~--~~eA 82 (261)
.++.++++..++++++.+|+++++|..||.++...|++++|+.+|++++++.|+++ .+...+|.+ |...|+ +++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~--~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENA--ELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHhcCCCCcHHH
Confidence 46778899999999999999999999999999999999999999999999999954 455567875 578888 5999
Q ss_pred HHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh
Q 024858 83 IEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK 158 (261)
Q Consensus 83 ~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~ 158 (261)
++.+++++++. |+++.++.+||.++.++|++++|+.+|+++++++|.+.+
T Consensus 130 ~~~l~~al~~d--------------------------P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~ 179 (198)
T PRK10370 130 REMIDKALALD--------------------------ANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVN 179 (198)
T ss_pred HHHHHHHHHhC--------------------------CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 99999999974 689999999999999999999999999999999998776
No 33
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.65 E-value=1.3e-14 Score=134.13 Aligned_cols=165 Identities=25% Similarity=0.227 Sum_probs=136.1
Q ss_pred hhhcCCHHHHHHHHHHHHHc--------CCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcC-----Cch-hHHHHHHH
Q 024858 3 QLVQKDPEAAIVLFWKAINA--------GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLC-----SKQ-SQESLDNV 68 (261)
Q Consensus 3 ~~~~~~~~~A~~~~~~al~~--------~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~-----P~~-~~~~~~~~ 68 (261)
...+|++++|+.+|..++.. .|.....+..+|.+|..++++.+|+.+|++++.+. +++ +.....+.
T Consensus 209 y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~n 288 (508)
T KOG1840|consen 209 YAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNN 288 (508)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 35689999999999999987 67778888889999999999999999999987642 332 23345677
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 024858 69 LIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQK 148 (261)
Q Consensus 69 L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~ 148 (261)
|+.+|.+.|+++||..++++++++... ... ...|+.+..+.+++.++..++++++|+.+|++
T Consensus 289 La~ly~~~GKf~EA~~~~e~Al~I~~~---------~~~---------~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~ 350 (508)
T KOG1840|consen 289 LAVLYYKQGKFAEAEEYCERALEIYEK---------LLG---------ASHPEVAAQLSELAAILQSMNEYEEAKKLLQK 350 (508)
T ss_pred HHHHHhccCChHHHHHHHHHHHHHHHH---------hhc---------cChHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 999999999999999999999998531 001 11133456889999999999999999999999
Q ss_pred HHhhC-----CCch---h-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 149 AQMID-----PDAN---K-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 149 al~~~-----P~~~---~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
++++- ++++ . ..+||.+|..+|+++||.++|++++..
T Consensus 351 al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~ 396 (508)
T KOG1840|consen 351 ALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQI 396 (508)
T ss_pred HHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 99864 3442 3 579999999999999999999999996
No 34
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.65 E-value=1.4e-14 Score=142.16 Aligned_cols=182 Identities=11% Similarity=0.041 Sum_probs=140.4
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCCh-HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchh--HHHHHHHHHHHHHHcCCH
Q 024858 3 QLVQKDPEAAIVLFWKAINAGDRV-DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQS--QESLDNVLIDLYKKCGKV 79 (261)
Q Consensus 3 ~~~~~~~~~A~~~~~~al~~~p~~-~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~--~~~~~~~L~~ly~~~g~~ 79 (261)
.+..|++++|+..|+++++.+|.. ..+...+|.++..+|++++|+..|++++...|.++ .......|+.++.++|++
T Consensus 247 Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~ 326 (765)
T PRK10049 247 LLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENY 326 (765)
T ss_pred HHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccH
Confidence 356689999999999999876442 23445579999999999999999999998887641 122334466678999999
Q ss_pred HHHHHHHHHHHHhhcch-------------h---hhcCcchHHHhhch------hhhh--hhcCCCcHHHHHHHHHHHHH
Q 024858 80 EEQIEMLKRKLRLIYQG-------------E---AFNGKPTKTARSHG------KKFQ--VSVRQETSRLLGNLAWAYMQ 135 (261)
Q Consensus 80 ~eA~~~~~~al~l~~~~-------------~---~~~~~~~~~~~~~~------~~~~--~~l~p~~~~~~~~Lg~~~~~ 135 (261)
++|+..+++++...|+. . +.. .........+ ..+. +...|+++.++.++|.++..
T Consensus 327 ~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~-~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~ 405 (765)
T PRK10049 327 PGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQS-LLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQA 405 (765)
T ss_pred HHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 99999999999875521 0 000 0000000011 1121 56789999999999999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 136 KTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 136 ~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
.|++++|+..+++++.++|++.. .+.+|.++..+|++++|...+++++..
T Consensus 406 ~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 406 RGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999 889999999999999999999999997
No 35
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.64 E-value=2.5e-14 Score=117.57 Aligned_cols=132 Identities=20% Similarity=0.183 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHH
Q 024858 27 DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKT 106 (261)
Q Consensus 27 ~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~ 106 (261)
..+...||.-|.++|++..|.+-++++++.+|++ ...+..++.+|.+.|+.+.|-+.|++++.+.
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~--~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~------------- 99 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSY--YLAHLVRAHYYQKLGENDLADESYRKALSLA------------- 99 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc--HHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-------------
Confidence 4566779999999999999999999999999994 4456679999999999999999999999985
Q ss_pred HhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc---hh-hhhHHHHHHHcCCHHHHHHHHHHH
Q 024858 107 ARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDA---NK-ACNLGLCLIKRTRYNEARSVLEDV 182 (261)
Q Consensus 107 ~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~---~~-~~~L~~~l~~~g~~~eA~~~~~~~ 182 (261)
|++.++++|.|+.+..+|+|++|...|++|+. +|.. .. +.|+|.|-.++|+++.|...|+++
T Consensus 100 -------------p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~-~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~ra 165 (250)
T COG3063 100 -------------PNNGDVLNNYGAFLCAQGRPEEAMQQFERALA-DPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRA 165 (250)
T ss_pred -------------CCccchhhhhhHHHHhCCChHHHHHHHHHHHh-CCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHH
Confidence 45678999999999999999999999999997 4544 45 789999999999999999999999
Q ss_pred HhCCC
Q 024858 183 LYGRI 187 (261)
Q Consensus 183 l~~~~ 187 (261)
+...+
T Consensus 166 L~~dp 170 (250)
T COG3063 166 LELDP 170 (250)
T ss_pred HHhCc
Confidence 99843
No 36
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.63 E-value=2e-14 Score=121.45 Aligned_cols=174 Identities=16% Similarity=0.044 Sum_probs=135.8
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCChH---HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHH-HHHHHHHHHHHHc--
Q 024858 3 QLVQKDPEAAIVLFWKAINAGDRVD---SALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQE-SLDNVLIDLYKKC-- 76 (261)
Q Consensus 3 ~~~~~~~~~A~~~~~~al~~~p~~~---~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~-~~~~~L~~ly~~~-- 76 (261)
.+..|++++|+..|++++...|+.+ .++..+|.++.++|++++|+..++++++..|+++.. .....+|.+|.+.
T Consensus 43 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~ 122 (235)
T TIGR03302 43 ALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQID 122 (235)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcc
Confidence 4567999999999999999988765 678999999999999999999999999999974321 2345578888776
Q ss_pred ------CCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 024858 77 ------GKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQ 150 (261)
Q Consensus 77 ------g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al 150 (261)
|++++|+..|+++++..|............. .+.........++|.+|..+|++.+|+..|++++
T Consensus 123 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~---------~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al 193 (235)
T TIGR03302 123 RVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMD---------YLRNRLAGKELYVARFYLKRGAYVAAINRFETVV 193 (235)
T ss_pred cccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 8999999999999998653211000000000 0001122345689999999999999999999999
Q ss_pred hhCCCch---h-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 151 MIDPDAN---K-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 151 ~~~P~~~---~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
...|+++ . ++.+|.++..+|++++|..+++.+...
T Consensus 194 ~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 194 ENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9988754 5 789999999999999999988887664
No 37
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.59 E-value=8e-14 Score=136.92 Aligned_cols=153 Identities=13% Similarity=0.112 Sum_probs=139.7
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHH
Q 024858 3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ 82 (261)
Q Consensus 3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA 82 (261)
.+-.|+.++|+..|.+++..+|..+.++..+|.++...|++++|+.++++++.++|+++ .+...++.++...|++++|
T Consensus 25 a~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~--~a~~~la~~l~~~g~~~eA 102 (765)
T PRK10049 25 ALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQND--DYQRGLILTLADAGQYDEA 102 (765)
T ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHCCCHHHH
Confidence 45679999999999999988999999999999999999999999999999999999853 3455688999999999999
Q ss_pred HHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhh
Q 024858 83 IEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACN 161 (261)
Q Consensus 83 ~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~ 161 (261)
+..++++++.. |+++. +..+|.++..+|++++|+..|+++++++|++.. +..
T Consensus 103 ~~~l~~~l~~~--------------------------P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~ 155 (765)
T PRK10049 103 LVKAKQLVSGA--------------------------PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTE 155 (765)
T ss_pred HHHHHHHHHhC--------------------------CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 99999999874 46677 999999999999999999999999999999999 889
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Q 024858 162 LGLCLIKRTRYNEARSVLEDVLY 184 (261)
Q Consensus 162 L~~~l~~~g~~~eA~~~~~~~l~ 184 (261)
+|.++...|+.++|+..++++..
T Consensus 156 la~~l~~~~~~e~Al~~l~~~~~ 178 (765)
T PRK10049 156 YVQALRNNRLSAPALGAIDDANL 178 (765)
T ss_pred HHHHHHHCCChHHHHHHHHhCCC
Confidence 99999999999999999986554
No 38
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.58 E-value=4.8e-14 Score=108.85 Aligned_cols=116 Identities=13% Similarity=-0.005 Sum_probs=77.8
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 024858 15 LFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIY 94 (261)
Q Consensus 15 ~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~ 94 (261)
.|++++..+|++..+...+|..+.+.|++++|+..+++++..+|++ ..+...+|.+|...|++++|+..+++++++.
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~- 81 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYN--SRYWLGLAACCQMLKEYEEAIDAYALAAALD- 81 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 5666777777777777777777777777777777777777776663 2344456667777777777777777766653
Q ss_pred chhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh
Q 024858 95 QGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK 158 (261)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~ 158 (261)
|+++..+.++|.+|...|++++|+..|+++++++|++..
T Consensus 82 -------------------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 82 -------------------------PDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred -------------------------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 344556667777777777777777777777777776654
No 39
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.57 E-value=1.6e-13 Score=125.56 Aligned_cols=184 Identities=15% Similarity=0.093 Sum_probs=143.1
Q ss_pred chhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc-------------------------
Q 024858 2 VQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGL------------------------- 56 (261)
Q Consensus 2 ~~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~------------------------- 56 (261)
+++..|+++.|...++..++..|+++.++..++.++.++|++++|++.+++..+.
T Consensus 162 l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~ 241 (409)
T TIGR00540 162 ILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMA 241 (409)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3566899999999999999999999999999999999999999988876665543
Q ss_pred -------------CCch--hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhh-----hc--Ccch-HHHhhchhh
Q 024858 57 -------------CSKQ--SQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEA-----FN--GKPT-KTARSHGKK 113 (261)
Q Consensus 57 -------------~P~~--~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~-----~~--~~~~-~~~~~~~~~ 113 (261)
.|+. ....+...++.++...|++++|++.++++++..|+... +. .... .........
T Consensus 242 ~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~ 321 (409)
T TIGR00540 242 DEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKL 321 (409)
T ss_pred hcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHH
Confidence 2210 01234455778899999999999999999998765541 11 0000 000000111
Q ss_pred hh--hhcCCCcH--HHHHHHHHHHHHcCCHHHHHHHHH--HHHhhCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 114 FQ--VSVRQETS--RLLGNLAWAYMQKTNFMAAEVVYQ--KAQMIDPDANKACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 114 ~~--~~l~p~~~--~~~~~Lg~~~~~~g~~~eA~~~~~--~al~~~P~~~~~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
+. +...|+++ .++..+|+++.++|++++|.++|+ ++++.+|++.....||.++.++|+.++|.++|++++..
T Consensus 322 ~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 322 IEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 21 57789999 899999999999999999999999 68889999988669999999999999999999998774
No 40
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.57 E-value=1.7e-13 Score=107.52 Aligned_cols=117 Identities=15% Similarity=0.037 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 024858 65 LDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEV 144 (261)
Q Consensus 65 ~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~ 144 (261)
....+|..+...|++++|+..|+-+..++ |.+++.|.|||.|+..+|++.+|+.
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~D--------------------------p~~~~y~~gLG~~~Q~~g~~~~AI~ 90 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYD--------------------------AWSFDYWFRLGECCQAQKHWGEAIY 90 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------------------------cccHHHHHHHHHHHHHHhhHHHHHH
Confidence 34557888899999999999999988764 4678899999999999999999999
Q ss_pred HHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchhhHHHHHHHHHHHH
Q 024858 145 VYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELLLELE 207 (261)
Q Consensus 145 ~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~a~~~l~~l~ 207 (261)
.|.+|+.++|+++. .+++|.|+...|+.++|...|+.++......+.+..-.++|..+|..+.
T Consensus 91 aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~~~~l~~~A~~~L~~l~ 154 (157)
T PRK15363 91 AYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEVSEHQILRQRAEKMLQQLS 154 (157)
T ss_pred HHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHhh
Confidence 99999999999999 9999999999999999999999999964223444455566777777664
No 41
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.56 E-value=5e-14 Score=122.37 Aligned_cols=202 Identities=21% Similarity=0.154 Sum_probs=91.5
Q ss_pred hcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHH
Q 024858 5 VQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIE 84 (261)
Q Consensus 5 ~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~ 84 (261)
..++++.|+..|++.+..++..+..+..++.+ ...+++++|+.++++.....++ .. .....+.+|...|+++++..
T Consensus 56 ~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~--~~-~l~~~l~~~~~~~~~~~~~~ 131 (280)
T PF13429_consen 56 SLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYERDGD--PR-YLLSALQLYYRLGDYDEAEE 131 (280)
T ss_dssp ------------------------------------------------------------------H-HHHTT-HHHHHH
T ss_pred cccccccccccccccccccccccccccccccc-cccccccccccccccccccccc--cc-hhhHHHHHHHHHhHHHHHHH
Confidence 46889999999999999999999999899888 7999999999999988876655 22 23346678899999999999
Q ss_pred HHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHH
Q 024858 85 MLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLG 163 (261)
Q Consensus 85 ~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~ 163 (261)
.++++..... -|+++.++..+|.++.+.|++++|+..|+++++.+|+++. ...++
T Consensus 132 ~l~~~~~~~~------------------------~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~ 187 (280)
T PF13429_consen 132 LLEKLEELPA------------------------APDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALA 187 (280)
T ss_dssp HHHHHHH-T---------------------------T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred HHHHHHhccC------------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 9999876421 0235678888999999999999999999999999999998 88899
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCc----------chhhHHHHHHHHHHHHhcCC-CCchhhhcccch--hHHHHHH
Q 024858 164 LCLIKRTRYNEARSVLEDVLYGRIPGCE----------DGRTRKRAEELLLELESKQP-PPDLSDLLGLNL--EDEFVNG 230 (261)
Q Consensus 164 ~~l~~~g~~~eA~~~~~~~l~~~~~~~~----------~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~~~~--~d~~~~~ 230 (261)
.+++..|+++++..+++.+....+.++. ..+..+.|.+.+.......| ++.....|+-.+ .+++.++
T Consensus 188 ~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A 267 (280)
T PF13429_consen 188 WLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEA 267 (280)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT--------
T ss_pred HHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999988888877775322221 24566677777777655444 555555555554 3555555
Q ss_pred HHHH
Q 024858 231 LEEM 234 (261)
Q Consensus 231 ~~~~ 234 (261)
++-.
T Consensus 268 ~~~~ 271 (280)
T PF13429_consen 268 LRLR 271 (280)
T ss_dssp ----
T ss_pred cccc
Confidence 5443
No 42
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.56 E-value=2.1e-13 Score=133.52 Aligned_cols=157 Identities=10% Similarity=0.077 Sum_probs=124.9
Q ss_pred CchhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHH
Q 024858 1 MVQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVE 80 (261)
Q Consensus 1 ~~~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~ 80 (261)
|+...+|+++.|+..|+++++.+|+++.++..+..++...|+.++|+..+++++ .|.+........+|.+|..+|+++
T Consensus 42 ii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~--~p~n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 42 IIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ--SSMNISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc--cCCCCCHHHHHHHHHHHHHcCCHH
Confidence 356789999999999999999999997666699999999999999999999999 554323333444588999999999
Q ss_pred HHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchhhh
Q 024858 81 EQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKAC 160 (261)
Q Consensus 81 eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~ 160 (261)
+|++.|+++++..| ++++++..|+.+|...++.++|+..+++++..+|++....
T Consensus 120 ~Aiely~kaL~~dP--------------------------~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l 173 (822)
T PRK14574 120 QALALWQSSLKKDP--------------------------TNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYM 173 (822)
T ss_pred HHHHHHHHHHhhCC--------------------------CCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHH
Confidence 99999999999754 5566777777888888888888888888888888754444
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 161 NLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 161 ~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
.++.++..+++..+|+..|++++..
T Consensus 174 ~layL~~~~~~~~~AL~~~ekll~~ 198 (822)
T PRK14574 174 TLSYLNRATDRNYDALQASSEAVRL 198 (822)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHh
Confidence 4455555567776688888888876
No 43
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.55 E-value=3.7e-13 Score=122.78 Aligned_cols=182 Identities=16% Similarity=0.154 Sum_probs=134.0
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCch---h------------------
Q 024858 3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ---S------------------ 61 (261)
Q Consensus 3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~---~------------------ 61 (261)
++..|++++|...+++.++.+|+++.++..++.++.+.|++++|++.+.+..+..+.+ .
T Consensus 163 ~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~ 242 (398)
T PRK10747 163 QLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMAD 242 (398)
T ss_pred HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567888888888888888888888888888888888888888886666555432210 0
Q ss_pred -------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhh---cCcc-hHHHhhchhhhh--h
Q 024858 62 -------------------QESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAF---NGKP-TKTARSHGKKFQ--V 116 (261)
Q Consensus 62 -------------------~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~---~~~~-~~~~~~~~~~~~--~ 116 (261)
...+...++..+...|+.++|...++++++. +++... .+.. .......-..+. +
T Consensus 243 ~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l~~~~~~~al~~~e~~l 321 (398)
T PRK10747 243 QGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRLKTNNPEQLEKVLRQQI 321 (398)
T ss_pred cCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhccCCChHHHHHHHHHHH
Confidence 1112344577778888888888888888884 333211 0100 000000001111 4
Q ss_pred hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 117 SVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 117 ~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
...|+++..+..+|.++.++|++++|..+|+++++.+|++..+..|+.++.++|+.++|..+|++.+..
T Consensus 322 k~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 322 KQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred hhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 667999999999999999999999999999999999999988788999999999999999999999875
No 44
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=2.2e-13 Score=123.90 Aligned_cols=194 Identities=19% Similarity=0.109 Sum_probs=152.6
Q ss_pred hhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHH
Q 024858 4 LVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQI 83 (261)
Q Consensus 4 ~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~ 83 (261)
+--|...+|..+|.|+..+||....+|...|..+...|..++|+.+|..+.++.|+-. ... ..+|.=|...+.++-|.
T Consensus 323 l~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h-lP~-LYlgmey~~t~n~kLAe 400 (611)
T KOG1173|consen 323 LMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH-LPS-LYLGMEYMRTNNLKLAE 400 (611)
T ss_pred HHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc-chH-HHHHHHHHHhccHHHHH
Confidence 3448899999999999999999999999999999999999999999999999999832 222 33788889999999999
Q ss_pred HHHHHHHHhhcchhhh-c--Ccc---hHHHhhchhhhh--h----hcCC---CcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 024858 84 EMLKRKLRLIYQGEAF-N--GKP---TKTARSHGKKFQ--V----SVRQ---ETSRLLGNLAWAYMQKTNFMAAEVVYQK 148 (261)
Q Consensus 84 ~~~~~al~l~~~~~~~-~--~~~---~~~~~~~~~~~~--~----~l~p---~~~~~~~~Lg~~~~~~g~~~eA~~~~~~ 148 (261)
..|.+|+.+.|.+... + |.. .+....-...|+ + .+.+ -...++.|||.+|..++++++|+..|++
T Consensus 401 ~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~ 480 (611)
T KOG1173|consen 401 KFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQK 480 (611)
T ss_pred HHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHH
Confidence 9999999998765322 1 100 000000001111 1 1222 2455789999999999999999999999
Q ss_pred HHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchhhHHHHHHHHHHH
Q 024858 149 AQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELLLEL 206 (261)
Q Consensus 149 al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~a~~~l~~l 206 (261)
+|.+.|.++. +..+|.+|..+|+++.|+..|.++|.. .|++.- +.++|...
T Consensus 481 aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l---~p~n~~----~~~lL~~a 532 (611)
T KOG1173|consen 481 ALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALAL---KPDNIF----ISELLKLA 532 (611)
T ss_pred HHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhc---CCccHH----HHHHHHHH
Confidence 9999999999 999999999999999999999999998 444422 55666543
No 45
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.55 E-value=1e-12 Score=110.99 Aligned_cols=140 Identities=18% Similarity=0.102 Sum_probs=119.4
Q ss_pred CCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcC
Q 024858 23 GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQ-ESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNG 101 (261)
Q Consensus 23 ~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~-~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~ 101 (261)
++..++.+..+|..+...|++++|+..+++++..+|+++. ......+|.+|.+.|++++|+..|+++++..|.+
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~----- 103 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNH----- 103 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC-----
Confidence 3456888999999999999999999999999999997532 2345678999999999999999999999986521
Q ss_pred cchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHhhCCCchh-h-------------
Q 024858 102 KPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQK--------TNFMAAEVVYQKAQMIDPDANK-A------------- 159 (261)
Q Consensus 102 ~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~--------g~~~eA~~~~~~al~~~P~~~~-~------------- 159 (261)
|..+.+++.+|.++... |++++|+..|++++..+|++.. +
T Consensus 104 ------------------~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~ 165 (235)
T TIGR03302 104 ------------------PDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRL 165 (235)
T ss_pred ------------------CchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHH
Confidence 12235788999999876 8999999999999999999863 2
Q ss_pred ----hhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 160 ----CNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 160 ----~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
..+|.++..+|++.+|+..|++++..
T Consensus 166 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~ 195 (235)
T TIGR03302 166 AGKELYVARFYLKRGAYVAAINRFETVVEN 195 (235)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 26788999999999999999999997
No 46
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.54 E-value=3.2e-13 Score=104.25 Aligned_cols=110 Identities=20% Similarity=0.169 Sum_probs=100.0
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHH
Q 024858 48 EAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLG 127 (261)
Q Consensus 48 ~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~ 127 (261)
+.+++++..+|++. .....++..+...|++++|+..+++++.+. |+++.++.
T Consensus 4 ~~~~~~l~~~p~~~--~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------------------------p~~~~~~~ 55 (135)
T TIGR02552 4 ATLKDLLGLDSEQL--EQIYALAYNLYQQGRYDEALKLFQLLAAYD--------------------------PYNSRYWL 55 (135)
T ss_pred hhHHHHHcCChhhH--HHHHHHHHHHHHcccHHHHHHHHHHHHHhC--------------------------CCcHHHHH
Confidence 46788999999853 445668999999999999999999988864 45678999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 128 NLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 128 ~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
++|.++..+|++++|+..|++++..+|+++. ++++|.++...|++++|+..+++++..
T Consensus 56 ~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 56 GLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999 999999999999999999999999998
No 47
>PLN02789 farnesyltranstransferase
Probab=99.54 E-value=1.2e-12 Score=115.81 Aligned_cols=156 Identities=12% Similarity=0.055 Sum_probs=131.7
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcC-CcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCH--
Q 024858 3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLD-RSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKV-- 79 (261)
Q Consensus 3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g-~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~-- 79 (261)
+...+..++|+.++.++|..+|++..+|+..|.++..+| ++++++..+++++..+|++.. +++..+.++.+.|+.
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyq--aW~~R~~~l~~l~~~~~ 124 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQ--IWHHRRWLAEKLGPDAA 124 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchH--HhHHHHHHHHHcCchhh
Confidence 345678899999999999999999999999999999998 579999999999999998532 344456666777874
Q ss_pred HHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-
Q 024858 80 EEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK- 158 (261)
Q Consensus 80 ~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~- 158 (261)
++++.+++++++++ |++..+|.+.|+++...|++++|+..+.++++.+|+|..
T Consensus 125 ~~el~~~~kal~~d--------------------------pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sA 178 (320)
T PLN02789 125 NKELEFTRKILSLD--------------------------AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSA 178 (320)
T ss_pred HHHHHHHHHHHHhC--------------------------cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhH
Confidence 67888888888864 456789999999999999999999999999999999999
Q ss_pred hhhHHHHHHHc---CCH----HHHHHHHHHHHhCC
Q 024858 159 ACNLGLCLIKR---TRY----NEARSVLEDVLYGR 186 (261)
Q Consensus 159 ~~~L~~~l~~~---g~~----~eA~~~~~~~l~~~ 186 (261)
|.+.+.++.+. |++ ++++.+..+++..+
T Consensus 179 W~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~ 213 (320)
T PLN02789 179 WNQRYFVITRSPLLGGLEAMRDSELKYTIDAILAN 213 (320)
T ss_pred HHHHHHHHHhccccccccccHHHHHHHHHHHHHhC
Confidence 99999998876 334 47888888988873
No 48
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.53 E-value=5.1e-13 Score=111.75 Aligned_cols=145 Identities=19% Similarity=0.183 Sum_probs=91.9
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 024858 12 AIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLR 91 (261)
Q Consensus 12 A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~ 91 (261)
+...+-+....+|++.++ .+++..+...|+-+.+..+..++....|.+ ..+...+|......|++.+|+..++++..
T Consensus 52 a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d--~~ll~~~gk~~~~~g~~~~A~~~~rkA~~ 128 (257)
T COG5010 52 AAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKD--RELLAAQGKNQIRNGNFGEAVSVLRKAAR 128 (257)
T ss_pred HHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCccc--HHHHHHHHHHHHHhcchHHHHHHHHHHhc
Confidence 444444455566666666 666666666666666666666666555653 22333356666666777777777776666
Q ss_pred hhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcC
Q 024858 92 LIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRT 170 (261)
Q Consensus 92 l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g 170 (261)
+. |++.++|+.+|.+|.+.|++++|...|.+++++.|.++. ..|||..|.-.|
T Consensus 129 l~--------------------------p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~g 182 (257)
T COG5010 129 LA--------------------------PTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRG 182 (257)
T ss_pred cC--------------------------CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcC
Confidence 53 345566666666666666666666666666666666666 666666666666
Q ss_pred CHHHHHHHHHHHHhC
Q 024858 171 RYNEARSVLEDVLYG 185 (261)
Q Consensus 171 ~~~eA~~~~~~~l~~ 185 (261)
+++.|..++..+...
T Consensus 183 d~~~A~~lll~a~l~ 197 (257)
T COG5010 183 DLEDAETLLLPAYLS 197 (257)
T ss_pred CHHHHHHHHHHHHhC
Confidence 666666666666654
No 49
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.51 E-value=4.1e-13 Score=120.47 Aligned_cols=160 Identities=16% Similarity=0.191 Sum_probs=123.3
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHH
Q 024858 3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ 82 (261)
Q Consensus 3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA 82 (261)
.++-+++++|+.-|++++.++|++.-++..++..+.++++++++...++.+++.+|+- ....++.+.++..+++|++|
T Consensus 404 ~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~--~Evy~~fAeiLtDqqqFd~A 481 (606)
T KOG0547|consen 404 RFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNC--PEVYNLFAEILTDQQQFDKA 481 (606)
T ss_pred HHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--chHHHHHHHHHhhHHhHHHH
Confidence 3556778888888888888888888888888888888888888888888888888873 34566677888888888888
Q ss_pred HHHHHHHHHhhcchh-hhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCchh-h
Q 024858 83 IEMLKRKLRLIYQGE-AFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYM-QKTNFMAAEVVYQKAQMIDPDANK-A 159 (261)
Q Consensus 83 ~~~~~~al~l~~~~~-~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~-~~g~~~eA~~~~~~al~~~P~~~~-~ 159 (261)
++.|.+++++.|... .+. ++..+.+-|.+.. =.+++..|+.++++|+++||.+.. .
T Consensus 482 ~k~YD~ai~LE~~~~~~~v---------------------~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~ 540 (606)
T KOG0547|consen 482 VKQYDKAIELEPREHLIIV---------------------NAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAY 540 (606)
T ss_pred HHHHHHHHhhccccccccc---------------------cchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHH
Confidence 888888888754210 000 1222333333322 238999999999999999999998 8
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 160 CNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 160 ~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
..||.+...+|+.++|+++|+++...
T Consensus 541 ~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 541 ETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 89999999999999999999998875
No 50
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=3.3e-12 Score=112.78 Aligned_cols=205 Identities=19% Similarity=0.165 Sum_probs=165.9
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHH
Q 024858 3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ 82 (261)
Q Consensus 3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA 82 (261)
.+-.+++..|+.+-.++|..+|++.+++..-|.++++.||.++|+-+|+.+..+.|- ....+.-|...|...|++.||
T Consensus 310 l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~--rL~~Y~GL~hsYLA~~~~kEA 387 (564)
T KOG1174|consen 310 LYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPY--RLEIYRGLFHSYLAQKRFKEA 387 (564)
T ss_pred hhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchh--hHHHHHHHHHHHHhhchHHHH
Confidence 345789999999999999999999999999999999999999999999999999997 344566688999999999999
Q ss_pred HHHHHHHHHhhcchh-hh--cC----cchHHHhhchhhhh---hhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 024858 83 IEMLKRKLRLIYQGE-AF--NG----KPTKTARSHGKKFQ---VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMI 152 (261)
Q Consensus 83 ~~~~~~al~l~~~~~-~~--~~----~~~~~~~~~~~~~~---~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~ 152 (261)
...-+.+.+..+... .+ .| ...-..+.-.++|. +.++|....+...++..+...|+++++++.++++|..
T Consensus 388 ~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~ 467 (564)
T KOG1174|consen 388 NALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII 467 (564)
T ss_pred HHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh
Confidence 999999888765321 11 11 00111111223333 7899999999999999999999999999999999999
Q ss_pred CCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchhhHHHHHHHHHHHHhcCCCCchh
Q 024858 153 DPDANKACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELLLELESKQPPPDLS 216 (261)
Q Consensus 153 ~P~~~~~~~L~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~ 216 (261)
.||+.-+..||.++..++.+.+|..+|..++.. +|.+.+ +.+=+..+++...++++-
T Consensus 468 ~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~---dP~~~~----sl~Gl~~lEK~~~~~DAT 524 (564)
T KOG1174|consen 468 FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ---DPKSKR----TLRGLRLLEKSDDESDAT 524 (564)
T ss_pred ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc---CccchH----HHHHHHHHHhccCCCCcc
Confidence 999998999999999999999999999999998 454433 555566666555554443
No 51
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.50 E-value=3.6e-12 Score=106.70 Aligned_cols=151 Identities=16% Similarity=0.191 Sum_probs=135.2
Q ss_pred hcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHH
Q 024858 5 VQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIE 84 (261)
Q Consensus 5 ~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~ 84 (261)
..|+-+.+.....++....|.+.+.++.+|......|++.+|+..++++..+.|+++ ..++.+|-+|.+.|++++|-.
T Consensus 78 ~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~--~~~~~lgaaldq~Gr~~~Ar~ 155 (257)
T COG5010 78 LRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDW--EAWNLLGAALDQLGRFDEARR 155 (257)
T ss_pred hcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCCh--hhhhHHHHHHHHccChhHHHH
Confidence 456777777777787788899999999999999999999999999999999999964 467889999999999999999
Q ss_pred HHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHH
Q 024858 85 MLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLG 163 (261)
Q Consensus 85 ~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~ 163 (261)
.|.+++++. |+.+.+.+|||..|.-.|+++.|..++.++....+.+.. ..||+
T Consensus 156 ay~qAl~L~--------------------------~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLA 209 (257)
T COG5010 156 AYRQALELA--------------------------PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLA 209 (257)
T ss_pred HHHHHHHhc--------------------------cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHH
Confidence 999999984 456789999999999999999999999999999888888 89999
Q ss_pred HHHHHcCCHHHHHHHHHHHH
Q 024858 164 LCLIKRTRYNEARSVLEDVL 183 (261)
Q Consensus 164 ~~l~~~g~~~eA~~~~~~~l 183 (261)
.+...+|++++|.....+-+
T Consensus 210 l~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 210 LVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred HHHhhcCChHHHHhhccccc
Confidence 99999999999987665433
No 52
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.49 E-value=4.8e-13 Score=113.92 Aligned_cols=130 Identities=20% Similarity=0.220 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHH
Q 024858 27 DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKT 106 (261)
Q Consensus 27 ~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~ 106 (261)
++.+..-|.-+.+.++|.+|+..|.++|.++|.++ .++.+-+.+|.+.|.++.|++-++.+|.++|
T Consensus 81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nA--VyycNRAAAy~~Lg~~~~AVkDce~Al~iDp------------ 146 (304)
T KOG0553|consen 81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNA--VYYCNRAAAYSKLGEYEDAVKDCESALSIDP------------ 146 (304)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcc--hHHHHHHHHHHHhcchHHHHHHHHHHHhcCh------------
Confidence 45577788888999999999999999999999964 3556678899999999999999999999754
Q ss_pred HhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHH---HHHHHHHHH
Q 024858 107 ARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYN---EARSVLEDV 182 (261)
Q Consensus 107 ~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~---eA~~~~~~~ 182 (261)
....+|..||.+|..+|++++|+..|++||.++|+|.. +.+|..+-.+.+..+ .+...++-+
T Consensus 147 --------------~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~ 212 (304)
T KOG0553|consen 147 --------------HYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMA 212 (304)
T ss_pred --------------HHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCCcccccccchhhh
Confidence 45678999999999999999999999999999999998 888888887777666 444444443
Q ss_pred Hh
Q 024858 183 LY 184 (261)
Q Consensus 183 l~ 184 (261)
..
T Consensus 213 ~~ 214 (304)
T KOG0553|consen 213 GL 214 (304)
T ss_pred hh
Confidence 33
No 53
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.49 E-value=1.1e-12 Score=126.41 Aligned_cols=128 Identities=13% Similarity=0.009 Sum_probs=117.5
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHH
Q 024858 3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ 82 (261)
Q Consensus 3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA 82 (261)
....|++++|+.+++.+++..|++..++.+++.++.++++++||...+++++...|+++ ...+.+|.++.+.|++++|
T Consensus 96 ~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~--~~~~~~a~~l~~~g~~~~A 173 (694)
T PRK15179 96 LEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSA--REILLEAKSWDEIGQSEQA 173 (694)
T ss_pred HHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCH--HHHHHHHHHHHHhcchHHH
Confidence 35679999999999999999999999999999999999999999999999999999954 4566799999999999999
Q ss_pred HHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh
Q 024858 83 IEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK 158 (261)
Q Consensus 83 ~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~ 158 (261)
+++|+++++.. |+++.++.++|.+++..|+.++|...|++|++...+-..
T Consensus 174 ~~~y~~~~~~~--------------------------p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~ 223 (694)
T PRK15179 174 DACFERLSRQH--------------------------PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGAR 223 (694)
T ss_pred HHHHHHHHhcC--------------------------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchH
Confidence 99999999842 467889999999999999999999999999999877665
No 54
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.48 E-value=1.9e-12 Score=115.73 Aligned_cols=153 Identities=14% Similarity=0.083 Sum_probs=104.0
Q ss_pred hhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHc----CCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCH
Q 024858 4 LVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQL----DRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKV 79 (261)
Q Consensus 4 ~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~----g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~ 79 (261)
...|++++|...+++++..+|++..++.. +..+... |+..++.+.+.......|.. .....+++.++..+|++
T Consensus 54 ~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~a~~~~~~G~~ 130 (355)
T cd05804 54 WIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDY--WYLLGMLAFGLEEAGQY 130 (355)
T ss_pred HHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCc--HHHHHHHHHHHHHcCCH
Confidence 45567777777777777777776665553 3333333 33333444333322333332 12333466677777777
Q ss_pred HHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-
Q 024858 80 EEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK- 158 (261)
Q Consensus 80 ~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~- 158 (261)
++|+..+++++++. |+++.++..+|.+|.++|++++|+.++++++...|.++.
T Consensus 131 ~~A~~~~~~al~~~--------------------------p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~ 184 (355)
T cd05804 131 DRAEEAARRALELN--------------------------PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSML 184 (355)
T ss_pred HHHHHHHHHHHhhC--------------------------CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcch
Confidence 77777777777764 456678889999999999999999999999998875432
Q ss_pred ----hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 159 ----ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 159 ----~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
+..+|.++..+|++++|+.+|++++..
T Consensus 185 ~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 185 RGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 347899999999999999999998754
No 55
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=2.5e-12 Score=115.55 Aligned_cols=156 Identities=13% Similarity=0.097 Sum_probs=120.3
Q ss_pred chhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHH
Q 024858 2 VQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEE 81 (261)
Q Consensus 2 ~~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~e 81 (261)
.+++.|++-.|...|.++|+++|.+.+.+-.+|.+|.+.++.++-...+.++..++|.++. ++.--|.++.-.+++++
T Consensus 335 F~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~d--vYyHRgQm~flL~q~e~ 412 (606)
T KOG0547|consen 335 FHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPD--VYYHRGQMRFLLQQYEE 412 (606)
T ss_pred hhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCc--hhHhHHHHHHHHHHHHH
Confidence 3678899999999999999999999998999999999999999999999999999999654 34446788888899999
Q ss_pred HHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hh
Q 024858 82 QIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-AC 160 (261)
Q Consensus 82 A~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~ 160 (261)
|+.-|++++.++| ++.-.+..++.+..++++++++...|+.+....|+.+. ..
T Consensus 413 A~aDF~Kai~L~p--------------------------e~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~ 466 (606)
T KOG0547|consen 413 AIADFQKAISLDP--------------------------ENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYN 466 (606)
T ss_pred HHHHHHHHhhcCh--------------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHH
Confidence 9999999999854 34445555666666666666666666666666666666 44
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 161 NLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 161 ~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
-.|.++..+++|+.|.+.|.+++..
T Consensus 467 ~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 467 LFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 4466666666666666666666554
No 56
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.46 E-value=3.8e-12 Score=117.87 Aligned_cols=165 Identities=20% Similarity=0.241 Sum_probs=128.4
Q ss_pred chhhcCCHHHHHHHHHHHHH--------cCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcC-------CchhHHHHH
Q 024858 2 VQLVQKDPEAAIVLFWKAIN--------AGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLC-------SKQSQESLD 66 (261)
Q Consensus 2 ~~~~~~~~~~A~~~~~~al~--------~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~-------P~~~~~~~~ 66 (261)
+.+..+++++|+.+|++|+. .+|..+.++.+||.+|..+|+++||..++++++.+. +... ....
T Consensus 250 ~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v-~~~l 328 (508)
T KOG1840|consen 250 VYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEV-AAQL 328 (508)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHH-HHHH
Confidence 45678999999999999995 345667889999999999999999999998876542 1222 2234
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 024858 67 NVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVY 146 (261)
Q Consensus 67 ~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~ 146 (261)
..++.++..++++++|+.+|++++++.... .+ .-.|..+.+..|||.+|..+|+|+||..+|
T Consensus 329 ~~~~~~~~~~~~~Eea~~l~q~al~i~~~~-------------~g-----~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~ 390 (508)
T KOG1840|consen 329 SELAAILQSMNEYEEAKKLLQKALKIYLDA-------------PG-----EDNVNLAKIYANLAELYLKMGKYKEAEELY 390 (508)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHhh-------------cc-----ccchHHHHHHHHHHHHHHHhcchhHHHHHH
Confidence 568899999999999999999999985300 00 001223568899999999999999999999
Q ss_pred HHHHhhC--------CCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 147 QKAQMID--------PDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 147 ~~al~~~--------P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
++|+.+. +.... ..+||..+.+.+++.+|...|.++...
T Consensus 391 k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 391 KKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred HHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 9999875 22223 568899999999999999998877664
No 57
>PLN02789 farnesyltranstransferase
Probab=99.44 E-value=1e-11 Score=109.85 Aligned_cols=165 Identities=13% Similarity=0.029 Sum_probs=136.4
Q ss_pred CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCc--HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHH
Q 024858 8 DPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRS--EEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEM 85 (261)
Q Consensus 8 ~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~--~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~ 85 (261)
++++++.++.+++..+|++..+|+..+.++...|+. ++++..+++++..+|++ ..+++..+.++...|++++|++.
T Consensus 87 ~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkN--y~AW~~R~w~l~~l~~~~eeL~~ 164 (320)
T PLN02789 87 DLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKN--YHAWSHRQWVLRTLGGWEDELEY 164 (320)
T ss_pred hHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCccc--HHHHHHHHHHHHHhhhHHHHHHH
Confidence 689999999999999999999999999999999874 78899999999999985 33455577888999999999999
Q ss_pred HHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHc---CCH----HHHHHHHHHHHhhCCCchh
Q 024858 86 LKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQK---TNF----MAAEVVYQKAQMIDPDANK 158 (261)
Q Consensus 86 ~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~---g~~----~eA~~~~~~al~~~P~~~~ 158 (261)
+.++|++++ .+..+|++.|.++... |.+ ++++.+..+++.++|+|.+
T Consensus 165 ~~~~I~~d~--------------------------~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~S 218 (320)
T PLN02789 165 CHQLLEEDV--------------------------RNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNES 218 (320)
T ss_pred HHHHHHHCC--------------------------CchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcC
Confidence 999999753 5667999999998776 333 5788888999999999999
Q ss_pred -hhhHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCcchhhHHHHHHHHHHHH
Q 024858 159 -ACNLGLCLIK----RTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELLLELE 207 (261)
Q Consensus 159 -~~~L~~~l~~----~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~a~~~l~~l~ 207 (261)
|..++.++.. .++..+|+..+.+++.. .+... .|.+.|..+-
T Consensus 219 aW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~---~~~s~----~al~~l~d~~ 265 (320)
T PLN02789 219 PWRYLRGLFKDDKEALVSDPEVSSVCLEVLSK---DSNHV----FALSDLLDLL 265 (320)
T ss_pred HHHHHHHHHhcCCcccccchhHHHHHHHhhcc---cCCcH----HHHHHHHHHH
Confidence 9999999988 45678899999998775 22222 2666666654
No 58
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.40 E-value=5.4e-11 Score=106.37 Aligned_cols=180 Identities=19% Similarity=0.253 Sum_probs=138.2
Q ss_pred hhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHH
Q 024858 4 LVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQI 83 (261)
Q Consensus 4 ~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~ 83 (261)
...||+++|...|+.|+..+....++++++|..+..+|+.++|.+.+-+.-.+--+++ .+..-++++|.-..+...||
T Consensus 501 f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~--evl~qianiye~led~aqai 578 (840)
T KOG2003|consen 501 FANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNA--EVLVQIANIYELLEDPAQAI 578 (840)
T ss_pred eecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHhhCHHHHH
Confidence 3579999999999999999999999999999999999999999999877655443432 23445899999999999999
Q ss_pred HHHHHHHHhhcchhhhcCcchHHHhhchhh---hh-----hhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 024858 84 EMLKRKLRLIYQGEAFNGKPTKTARSHGKK---FQ-----VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPD 155 (261)
Q Consensus 84 ~~~~~al~l~~~~~~~~~~~~~~~~~~~~~---~~-----~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~ 155 (261)
+.|-++..+.|.+.+...+...+....+.+ |+ ..--|-+-++.--||..|....=+++|+.+|++|--+.|+
T Consensus 579 e~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~ 658 (840)
T KOG2003|consen 579 ELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPN 658 (840)
T ss_pred HHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCcc
Confidence 999999998775544332222222222222 11 2333566667777888888888888888888888888888
Q ss_pred chhh-hhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 156 ANKA-CNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 156 ~~~~-~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
...| ..++.|+.+.|.|..|...|+.+-..
T Consensus 659 ~~kwqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 659 QSKWQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 8884 56788888888888888888887764
No 59
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.39 E-value=1.2e-11 Score=97.08 Aligned_cols=109 Identities=11% Similarity=-0.030 Sum_probs=96.9
Q ss_pred HcC-CChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhh
Q 024858 21 NAG-DRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAF 99 (261)
Q Consensus 21 ~~~-p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~ 99 (261)
... ++.-+.++.+|..+.+.|++++|+..|+-+..++|.++ ..+..||.++..+|++.+||.+|.+++.+.
T Consensus 28 ~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~--~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~------ 99 (157)
T PRK15363 28 DDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSF--DYWFRLGECCQAQKHWGEAIYAYGRAAQIK------ 99 (157)
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH--HHHHHHHHHHHHHhhHHHHHHHHHHHHhcC------
Confidence 456 77788899999999999999999999999999999853 455669999999999999999999998874
Q ss_pred cCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch
Q 024858 100 NGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN 157 (261)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~ 157 (261)
|++|..+.|+|.||...|+.++|.+.|+.|+..--+++
T Consensus 100 --------------------~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~ 137 (157)
T PRK15363 100 --------------------IDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEVS 137 (157)
T ss_pred --------------------CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCh
Confidence 57889999999999999999999999999999864443
No 60
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.39 E-value=3.6e-12 Score=116.39 Aligned_cols=115 Identities=17% Similarity=0.107 Sum_probs=75.6
Q ss_pred HHHHHHHHHcCC--ChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 024858 13 IVLFWKAINAGD--RVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKL 90 (261)
Q Consensus 13 ~~~~~~al~~~p--~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al 90 (261)
..+|-.+....| .+++....||++|.-.|.|+.|+++|+.++...|+ +..++|-||-.+..-.+.+|||..|++||
T Consensus 414 ~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pn--d~~lWNRLGAtLAN~~~s~EAIsAY~rAL 491 (579)
T KOG1125|consen 414 QELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPN--DYLLWNRLGATLANGNRSEEAISAYNRAL 491 (579)
T ss_pred HHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCc--hHHHHHHhhHHhcCCcccHHHHHHHHHHH
Confidence 344445555555 56666666777777777777777777777777776 33455556666666677777777777776
Q ss_pred HhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 024858 91 RLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPD 155 (261)
Q Consensus 91 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~ 155 (261)
.+. |++.++++|||..|+.+|.|+||.++|-.||.+.+.
T Consensus 492 qLq--------------------------P~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 492 QLQ--------------------------PGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred hcC--------------------------CCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 663 344556677777777777777777777777766654
No 61
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.39 E-value=1.4e-10 Score=106.31 Aligned_cols=221 Identities=12% Similarity=0.044 Sum_probs=135.3
Q ss_pred chhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHH
Q 024858 2 VQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEE 81 (261)
Q Consensus 2 ~~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~e 81 (261)
..+.+||++.|.+...++.+..|+..-++...|.+..++|++++|..+++++.+..|++. ..+....+.++...|++++
T Consensus 93 la~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~-l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 93 LKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDN-ILVEIARTRILLAQNELHA 171 (409)
T ss_pred HHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCc-hHHHHHHHHHHHHCCCHHH
Confidence 456789999999999999998888777777889999999999999999999998888731 2244446888899999999
Q ss_pred HHHHHHHHHHhhcchhhhcCcchHHHhhch------hhhh--hhc---CCCcH-HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 024858 82 QIEMLKRKLRLIYQGEAFNGKPTKTARSHG------KKFQ--VSV---RQETS-RLLGNLAWAYMQKTNFMAAEVVYQKA 149 (261)
Q Consensus 82 A~~~~~~al~l~~~~~~~~~~~~~~~~~~~------~~~~--~~l---~p~~~-~~~~~Lg~~~~~~g~~~eA~~~~~~a 149 (261)
|.+.++++++..|................+ ..+. ... .|... .+....+.-+..++..+++...+.++
T Consensus 172 Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 172 ARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 999999998876532211000000000000 0000 000 11111 11112222223444444455566666
Q ss_pred HhhCC----Cchh-hhhHHHHHHHcCCHHHHHHHHHHHHhCCCCCCc------------chhhHHHHHHHHHHH-HhcCC
Q 024858 150 QMIDP----DANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCE------------DGRTRKRAEELLLEL-ESKQP 211 (261)
Q Consensus 150 l~~~P----~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~~~~~~------------~~~~~~~a~~~l~~l-~~~~~ 211 (261)
....| +++. +..++..+...|++++|...+++++...+.+.. .+.+...+...++.. ...+.
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~ 331 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD 331 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC
Confidence 66666 3555 677888888888888888888888886332221 122233344444433 33333
Q ss_pred CC--chhhhcccch
Q 024858 212 PP--DLSDLLGLNL 223 (261)
Q Consensus 212 ~~--~~~~~~~~~~ 223 (261)
++ ...+.+|..+
T Consensus 332 ~~~~~ll~sLg~l~ 345 (409)
T TIGR00540 332 KPKCCINRALGQLL 345 (409)
T ss_pred ChhHHHHHHHHHHH
Confidence 45 5666777766
No 62
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=6.4e-12 Score=114.56 Aligned_cols=137 Identities=20% Similarity=0.216 Sum_probs=118.5
Q ss_pred hhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc----CCch-hHHHHHHHHHHHHHHcCC
Q 024858 4 LVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGL----CSKQ-SQESLDNVLIDLYKKCGK 78 (261)
Q Consensus 4 ~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~----~P~~-~~~~~~~~L~~ly~~~g~ 78 (261)
.+-+++.-|..+|.+|+.+.|.+|-.++.+|++....+.+.+|+..++.++.. .+.. .|....++||.+|+++++
T Consensus 391 ~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~ 470 (611)
T KOG1173|consen 391 MRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNK 470 (611)
T ss_pred HHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhh
Confidence 34678889999999999999999999999999999999999999999988733 2221 256667889999999999
Q ss_pred HHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh
Q 024858 79 VEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK 158 (261)
Q Consensus 79 ~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~ 158 (261)
+++||..|+++|.+. |.+++++..+|.+|.-+|+++.|+.+|.++|.++|++..
T Consensus 471 ~~eAI~~~q~aL~l~--------------------------~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~ 524 (611)
T KOG1173|consen 471 YEEAIDYYQKALLLS--------------------------PKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIF 524 (611)
T ss_pred HHHHHHHHHHHHHcC--------------------------CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHH
Confidence 999999999999985 457889999999999999999999999999999999976
Q ss_pred -hhhHHHHH
Q 024858 159 -ACNLGLCL 166 (261)
Q Consensus 159 -~~~L~~~l 166 (261)
..-|+.+.
T Consensus 525 ~~~lL~~ai 533 (611)
T KOG1173|consen 525 ISELLKLAI 533 (611)
T ss_pred HHHHHHHHH
Confidence 54555443
No 63
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.38 E-value=1.9e-10 Score=105.01 Aligned_cols=89 Identities=9% Similarity=0.060 Sum_probs=49.7
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCChHHHHHHH-HHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHH
Q 024858 3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDM-AVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEE 81 (261)
Q Consensus 3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~L-g~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~e 81 (261)
.+.+||+++|++...++-+..+. +.....+ +....++|++++|..+++++.+..|+.. .......+.++...|++++
T Consensus 94 a~~eGd~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~-~~~~l~~a~l~l~~g~~~~ 171 (398)
T PRK10747 94 KLAEGDYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQ-LPVEITRVRIQLARNENHA 171 (398)
T ss_pred HHhCCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcch-HHHHHHHHHHHHHCCCHHH
Confidence 34566777666665554443322 3333333 3333666777777777777666666631 1122234566666777777
Q ss_pred HHHHHHHHHHhh
Q 024858 82 QIEMLKRKLRLI 93 (261)
Q Consensus 82 A~~~~~~al~l~ 93 (261)
|++.++++++..
T Consensus 172 Al~~l~~~~~~~ 183 (398)
T PRK10747 172 ARHGVDKLLEVA 183 (398)
T ss_pred HHHHHHHHHhcC
Confidence 777776666654
No 64
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.38 E-value=1.2e-10 Score=104.10 Aligned_cols=186 Identities=13% Similarity=0.065 Sum_probs=134.3
Q ss_pred cCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchh-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchh-hh
Q 024858 22 AGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQS-QESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGE-AF 99 (261)
Q Consensus 22 ~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~-~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~-~~ 99 (261)
.||+.+.++..+|.++...|+.++|...+.++....|.+. ......+.+.++...|++++|++.++++++..|.+. +.
T Consensus 1 ~dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~ 80 (355)
T cd05804 1 ADPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLAL 80 (355)
T ss_pred CCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHH
Confidence 3788899999999999999999999888888887777531 123344567788889999999999999998866442 11
Q ss_pred c--------CcchHHHhhchhhhh--hhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHH
Q 024858 100 N--------GKPTKTARSHGKKFQ--VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIK 168 (261)
Q Consensus 100 ~--------~~~~~~~~~~~~~~~--~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~ 168 (261)
. +............+. ....|+...++.++|.++..+|++++|+..++++++++|++.. +..+|.++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~ 160 (355)
T cd05804 81 KLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEM 160 (355)
T ss_pred HHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence 1 100000000000010 1234555667788999999999999999999999999999998 8899999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCc--------------chhhHHHHHHHHHHHH
Q 024858 169 RTRYNEARSVLEDVLYGRIPGCE--------------DGRTRKRAEELLLELE 207 (261)
Q Consensus 169 ~g~~~eA~~~~~~~l~~~~~~~~--------------~~~~~~~a~~~l~~l~ 207 (261)
.|++++|+.++++++...+..+. ..+.++.|.+.+....
T Consensus 161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 99999999999999986332211 1345556666666653
No 65
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.34 E-value=1.5e-11 Score=104.79 Aligned_cols=109 Identities=22% Similarity=0.161 Sum_probs=96.6
Q ss_pred hhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHH
Q 024858 4 LVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQI 83 (261)
Q Consensus 4 ~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~ 83 (261)
+.+++|.+|+..|.+||+++|+++-.+.+-+.+|.++|.++.||+-++.++.++|.. ...+.-||.+|..+|++++|+
T Consensus 92 m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~y--skay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHY--SKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHH--HHHHHHHHHHHHccCcHHHHH
Confidence 457899999999999999999999999999999999999999999999999999994 334555999999999999999
Q ss_pred HHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHH
Q 024858 84 EMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFM 140 (261)
Q Consensus 84 ~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~ 140 (261)
+.|+++|++. |+++....||.++-..++...
T Consensus 170 ~aykKaLeld--------------------------P~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 170 EAYKKALELD--------------------------PDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHhhhccC--------------------------CCcHHHHHHHHHHHHHhcCCC
Confidence 9999999974 466777788888877776665
No 66
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.33 E-value=3.7e-11 Score=108.04 Aligned_cols=112 Identities=16% Similarity=0.107 Sum_probs=95.9
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhh
Q 024858 30 LKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARS 109 (261)
Q Consensus 30 l~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~ 109 (261)
+...|..+...|++++|+..|++++.++|+++ .++..+|.+|...|++++|+..+++++.+.
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~--~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~---------------- 66 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNA--ELYADRAQANIKLGNFTEAVADANKAIELD---------------- 66 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------
Confidence 45568888899999999999999999999853 456668999999999999999999999874
Q ss_pred chhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHc
Q 024858 110 HGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKR 169 (261)
Q Consensus 110 ~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~ 169 (261)
|+++.+++++|.+|..+|++++|+..|++++.++|++.. ...++.|....
T Consensus 67 ----------P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 67 ----------PSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred ----------cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 456788999999999999999999999999999999998 66777775444
No 67
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.33 E-value=1.3e-10 Score=104.63 Aligned_cols=135 Identities=18% Similarity=0.062 Sum_probs=122.1
Q ss_pred CCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCc
Q 024858 23 GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGK 102 (261)
Q Consensus 23 ~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~ 102 (261)
+|.-..+++..+....+.|++++|...+...++..|+++ .+.-..++++.+.|+.++|++.+++++.+.|
T Consensus 302 ~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~--~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P-------- 371 (484)
T COG4783 302 KRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNP--YYLELAGDILLEANKAKEAIERLKKALALDP-------- 371 (484)
T ss_pred CccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCChHHHHHHHHHHHhcCC--------
Confidence 378888999999999999999999999999999999964 3556689999999999999999999999854
Q ss_pred chHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHH
Q 024858 103 PTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLED 181 (261)
Q Consensus 103 ~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~ 181 (261)
+.+-++.|+|.+|.+.|++.+|+..+.+.+..+|+++. |..|+.+|..+|+..+|...+.+
T Consensus 372 ------------------~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE 433 (484)
T COG4783 372 ------------------NSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAE 433 (484)
T ss_pred ------------------CccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHH
Confidence 44568899999999999999999999999999999999 99999999999999999998888
Q ss_pred HHhC
Q 024858 182 VLYG 185 (261)
Q Consensus 182 ~l~~ 185 (261)
....
T Consensus 434 ~~~~ 437 (484)
T COG4783 434 GYAL 437 (484)
T ss_pred HHHh
Confidence 7775
No 68
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.33 E-value=7.2e-11 Score=94.90 Aligned_cols=128 Identities=10% Similarity=0.016 Sum_probs=96.8
Q ss_pred hcCCHHHHHHHHHHHHHcCCCh--HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchh-HHHHHHHHHHHHHHcCCHHH
Q 024858 5 VQKDPEAAIVLFWKAINAGDRV--DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQS-QESLDNVLIDLYKKCGKVEE 81 (261)
Q Consensus 5 ~~~~~~~A~~~~~~al~~~p~~--~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~-~~~~~~~L~~ly~~~g~~~e 81 (261)
+++.+..+...+...++..+.. ..++..+|.++..+|++++|+..+++++.+.|+.. .......+|.+|...|++++
T Consensus 11 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~e 90 (168)
T CHL00033 11 IDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTK 90 (168)
T ss_pred cccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHH
Confidence 4566777777776665655554 67789999999999999999999999999877621 12355669999999999999
Q ss_pred HHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHH-------HcCCHH-------HHHHHHH
Q 024858 82 QIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYM-------QKTNFM-------AAEVVYQ 147 (261)
Q Consensus 82 A~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~-------~~g~~~-------eA~~~~~ 147 (261)
|+..|++++.+.| +....+.++|.+|. .+|+++ +|+.+|+
T Consensus 91 A~~~~~~Al~~~~--------------------------~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 144 (168)
T CHL00033 91 ALEYYFQALERNP--------------------------FLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWK 144 (168)
T ss_pred HHHHHHHHHHhCc--------------------------CcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHH
Confidence 9999999998743 23345556666665 777766 6666667
Q ss_pred HHHhhCCCchh
Q 024858 148 KAQMIDPDANK 158 (261)
Q Consensus 148 ~al~~~P~~~~ 158 (261)
+++..+|++..
T Consensus 145 ~a~~~~p~~~~ 155 (168)
T CHL00033 145 QAIALAPGNYI 155 (168)
T ss_pred HHHHhCcccHH
Confidence 77778887653
No 69
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.32 E-value=1.3e-11 Score=118.37 Aligned_cols=154 Identities=23% Similarity=0.303 Sum_probs=131.5
Q ss_pred cCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHH
Q 024858 6 QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEM 85 (261)
Q Consensus 6 ~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~ 85 (261)
.+..++|+++|.++|..+|.+..|-+.+|.|+...|++.+|+..|.++...-.+.. ..+.++|++|..+|+|-.||+.
T Consensus 625 kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~--dv~lNlah~~~e~~qy~~AIqm 702 (1018)
T KOG2002|consen 625 KKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFE--DVWLNLAHCYVEQGQYRLAIQM 702 (1018)
T ss_pred HHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCC--ceeeeHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999998876543321 2344589999999999999999
Q ss_pred HHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHH
Q 024858 86 LKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGL 164 (261)
Q Consensus 86 ~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~ 164 (261)
|+.+++... +.++..++..||.+|.+.|.+.+|..+..+|+...|.++. .+|+|.
T Consensus 703 Ye~~lkkf~------------------------~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~ 758 (1018)
T KOG2002|consen 703 YENCLKKFY------------------------KKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLAL 758 (1018)
T ss_pred HHHHHHHhc------------------------ccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHH
Confidence 999998742 1245779999999999999999999999999999999999 899998
Q ss_pred HHHHc-------------------CCHHHHHHHHHHHHhC
Q 024858 165 CLIKR-------------------TRYNEARSVLEDVLYG 185 (261)
Q Consensus 165 ~l~~~-------------------g~~~eA~~~~~~~l~~ 185 (261)
++.+. +..++|.++|+.+...
T Consensus 759 v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~ 798 (1018)
T KOG2002|consen 759 VLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKN 798 (1018)
T ss_pred HHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 88665 5667777777776664
No 70
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=5e-10 Score=101.82 Aligned_cols=179 Identities=20% Similarity=0.155 Sum_probs=138.8
Q ss_pred hhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCch---hHH--HHHHHHHHHHHHcCC
Q 024858 4 LVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ---SQE--SLDNVLIDLYKKCGK 78 (261)
Q Consensus 4 ~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~---~~~--~~~~~L~~ly~~~g~ 78 (261)
..+++++.|++.|.+++.++ .+...+++.+.++...|.+.+.+.....++..+-.. .+. -....+|..|.+.|+
T Consensus 235 ykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~ 313 (539)
T KOG0548|consen 235 YKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKRED 313 (539)
T ss_pred HHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHh
Confidence 35678999999999999999 888889999999999999999999998888766531 111 011225678999999
Q ss_pred HHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhh--hhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 024858 79 VEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKK--FQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDA 156 (261)
Q Consensus 79 ~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~--~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~ 156 (261)
++.|+..|.++|.-.-..+..+. .+......+. -...+.|+.+.--..-|..++..|+|.+|+..|.+|+..+|++
T Consensus 314 ~~~ai~~~~kaLte~Rt~~~ls~--lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~D 391 (539)
T KOG0548|consen 314 YEGAIKYYQKALTEHRTPDLLSK--LKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPED 391 (539)
T ss_pred HHHHHHHHHHHhhhhcCHHHHHH--HHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCch
Confidence 99999999998875311111110 0000000000 0135667777777788999999999999999999999999999
Q ss_pred hh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 157 NK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 157 ~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
+. +.|.|.||.++|.+..|+.-.+.++..
T Consensus 392 a~lYsNRAac~~kL~~~~~aL~Da~~~ieL 421 (539)
T KOG0548|consen 392 ARLYSNRAACYLKLGEYPEALKDAKKCIEL 421 (539)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 99 899999999999999999999999998
No 71
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.30 E-value=3.3e-10 Score=102.17 Aligned_cols=146 Identities=23% Similarity=0.128 Sum_probs=127.5
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHH
Q 024858 3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ 82 (261)
Q Consensus 3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA 82 (261)
....|++++|+..++..++..|+++..+...+.++...|+.++|++.+++++.++|+. ..+..++|..|.+.|++.+|
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~--~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNS--PLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc--cHHHHHHHHHHHhcCChHHH
Confidence 4567899999999999999999999999999999999999999999999999999995 34667799999999999999
Q ss_pred HHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchhhhhH
Q 024858 83 IEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKACNL 162 (261)
Q Consensus 83 ~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~L 162 (261)
|..+++.+.-+ |+++..|..||.+|..+|+..+|...+
T Consensus 394 i~~L~~~~~~~--------------------------p~dp~~w~~LAqay~~~g~~~~a~~A~---------------- 431 (484)
T COG4783 394 IRILNRYLFND--------------------------PEDPNGWDLLAQAYAELGNRAEALLAR---------------- 431 (484)
T ss_pred HHHHHHHhhcC--------------------------CCCchHHHHHHHHHHHhCchHHHHHHH----------------
Confidence 99999987753 578999999999999999999987755
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCcc
Q 024858 163 GLCLIKRTRYNEARSVLEDVLYGRIPGCED 192 (261)
Q Consensus 163 ~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~ 192 (261)
+..|.-.|++++|+..+.++......+..+
T Consensus 432 AE~~~~~G~~~~A~~~l~~A~~~~~~~~~~ 461 (484)
T COG4783 432 AEGYALAGRLEQAIIFLMRASQQVKLGFPD 461 (484)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhccCCcHH
Confidence 445666899999999999998874334433
No 72
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.29 E-value=4.1e-10 Score=97.78 Aligned_cols=185 Identities=12% Similarity=0.063 Sum_probs=152.0
Q ss_pred hhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHH
Q 024858 4 LVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQI 83 (261)
Q Consensus 4 ~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~ 83 (261)
+..|++..|+.-|..|+..+|++-.+++.-|.+|..+|+..-|+.-+.+++.+-|+..- ...--|.++.++|+++.|+
T Consensus 49 la~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~--ARiQRg~vllK~Gele~A~ 126 (504)
T KOG0624|consen 49 LARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMA--ARIQRGVVLLKQGELEQAE 126 (504)
T ss_pred HHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHH--HHHHhchhhhhcccHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999432 3333577889999999999
Q ss_pred HHHHHHHHhhcchhhhcCcchHH---------------Hh---hchhhh-----hhhcCCCcHHHHHHHHHHHHHcCCHH
Q 024858 84 EMLKRKLRLIYQGEAFNGKPTKT---------------AR---SHGKKF-----QVSVRQETSRLLGNLAWAYMQKTNFM 140 (261)
Q Consensus 84 ~~~~~al~l~~~~~~~~~~~~~~---------------~~---~~~~~~-----~~~l~p~~~~~~~~Lg~~~~~~g~~~ 140 (261)
.-|+++|.-.|+.....-...++ .- .+...+ .+++.|=++..+...+.||...|++.
T Consensus 127 ~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k 206 (504)
T KOG0624|consen 127 ADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPK 206 (504)
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHH
Confidence 99999999866332111000000 00 001111 15778888888999999999999999
Q ss_pred HHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcch
Q 024858 141 AAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDG 193 (261)
Q Consensus 141 eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~ 193 (261)
.|+.-++.+-++..|++. ++.++..+...|+.+.++...++.|.. +|+|.
T Consensus 207 ~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl---dpdHK 257 (504)
T KOG0624|consen 207 KAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL---DPDHK 257 (504)
T ss_pred HHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc---Ccchh
Confidence 999999999999999999 999999999999999999999999998 66663
No 73
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.28 E-value=1.1e-09 Score=94.45 Aligned_cols=181 Identities=13% Similarity=0.125 Sum_probs=110.3
Q ss_pred hhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCc---hhHHHHHHHHHHHHHHcCCHH
Q 024858 4 LVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK---QSQESLDNVLIDLYKKCGKVE 80 (261)
Q Consensus 4 ~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~---~~~~~~~~~L~~ly~~~g~~~ 80 (261)
|+..++++|+..|...++.+|..-+++..||.++.+.|..+.||.+-...+.. |+ +-...+..-||.=|...|-+|
T Consensus 46 LLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 46 LLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred HhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 56788999999999999999999999999999999999999999764443322 32 001111222444444445555
Q ss_pred HHHHHHHH----------------------------------HHHhhcchhhhcC------c-chHHHhhc-hh---hhh
Q 024858 81 EQIEMLKR----------------------------------KLRLIYQGEAFNG------K-PTKTARSH-GK---KFQ 115 (261)
Q Consensus 81 eA~~~~~~----------------------------------al~l~~~~~~~~~------~-~~~~~~~~-~~---~~~ 115 (261)
.|+.+|.. .+++.++...+.- . ......+. .+ .+.
T Consensus 125 RAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 125 RAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 55444444 4444221110000 0 00000000 00 000
Q ss_pred --hhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh--hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 116 --VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK--ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 116 --~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~--~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
+..+|+..++-..+|.++..+|+|..|++.++.+++.||+... ...|..||..+|+.++.+..+.++...
T Consensus 205 kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 205 KALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred HHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 3555666666666777777777777777777777777777765 446677777777777777777776665
No 74
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.27 E-value=2.5e-10 Score=91.75 Aligned_cols=118 Identities=12% Similarity=0.007 Sum_probs=89.8
Q ss_pred cHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCc
Q 024858 43 SEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQET 122 (261)
Q Consensus 43 ~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~ 122 (261)
+..+...+...++..+.+........+|.++...|++++|+..|++++.+.+.. ++.
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~-----------------------~~~ 71 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDP-----------------------YDR 71 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccc-----------------------hhh
Confidence 444444554444555543344556678999999999999999999999874310 013
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHH-------HcCCHHHHHHHHHHHH
Q 024858 123 SRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLI-------KRTRYNEARSVLEDVL 183 (261)
Q Consensus 123 ~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~-------~~g~~~eA~~~~~~~l 183 (261)
+.++.++|.+|..+|++++|+..|++++.++|++.. +.++|.++. .+|++++|...+.+++
T Consensus 72 ~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~ 140 (168)
T CHL00033 72 SYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAA 140 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHH
Confidence 458999999999999999999999999999999998 889999998 7788775555555443
No 75
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.27 E-value=4e-10 Score=97.26 Aligned_cols=178 Identities=15% Similarity=0.144 Sum_probs=142.0
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHH
Q 024858 3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ 82 (261)
Q Consensus 3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA 82 (261)
.++-|-+.+|++-++.+++..|. ++.+..|+.+|...++...|...|...+...|.+ .....-.+.++...|++++|
T Consensus 233 ylrLgm~r~AekqlqssL~q~~~-~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~--VT~l~g~ARi~eam~~~~~a 309 (478)
T KOG1129|consen 233 YLRLGMPRRAEKQLQSSLTQFPH-PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFD--VTYLLGQARIHEAMEQQEDA 309 (478)
T ss_pred HHHhcChhhhHHHHHHHhhcCCc-hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCch--hhhhhhhHHHHHHHHhHHHH
Confidence 35668889999999999987665 6688999999999999999999999999999984 44555578999999999999
Q ss_pred HHHHHHHHHhhcch-hhh---------cCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 024858 83 IEMLKRKLRLIYQG-EAF---------NGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMI 152 (261)
Q Consensus 83 ~~~~~~al~l~~~~-~~~---------~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~ 152 (261)
.++|+.++++.+.+ ++. .+++.-..+...+. +.+--.+++.+.|+|.|++--++++-++..|++|+..
T Consensus 310 ~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRi--LqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlst 387 (478)
T KOG1129|consen 310 LQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRI--LQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALST 387 (478)
T ss_pred HHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHH--HHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhh
Confidence 99999999986532 111 12221111111111 2233457889999999999999999999999999986
Q ss_pred C--CCch-h-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 153 D--PDAN-K-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 153 ~--P~~~-~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
. |+.. + |+|||.+....|++.-|.+.|+-+|..
T Consensus 388 at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~ 424 (478)
T KOG1129|consen 388 ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS 424 (478)
T ss_pred ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhcc
Confidence 4 5544 5 999999999999999999999999987
No 76
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.26 E-value=2.4e-11 Score=82.83 Aligned_cols=64 Identities=30% Similarity=0.384 Sum_probs=61.7
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcC-CHHHHHHHHHHHHhC
Q 024858 122 TSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRT-RYNEARSVLEDVLYG 185 (261)
Q Consensus 122 ~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g-~~~eA~~~~~~~l~~ 185 (261)
++.+|.++|.++..+|++++|+..|+++++++|+++. ++++|.++..+| ++++|+..+++++..
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 5679999999999999999999999999999999999 999999999999 799999999999986
No 77
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.26 E-value=4.4e-10 Score=90.75 Aligned_cols=99 Identities=17% Similarity=0.156 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 024858 64 SLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAE 143 (261)
Q Consensus 64 ~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~ 143 (261)
.....+|..|...|++++|+..|++++++.+.. ++...++.++|.++...|++++|+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-----------------------~~~~~~~~~la~~~~~~g~~~~A~ 92 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDP-----------------------NDRSYILYNMGIIYASNGEHDKAL 92 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc-----------------------chHHHHHHHHHHHHHHcCCHHHHH
Confidence 345567777778888888888888877753210 012356778888888888888888
Q ss_pred HHHHHHHhhCCCchh-hhhHHHHHHHcCC--------------HHHHHHHHHHHHhC
Q 024858 144 VVYQKAQMIDPDANK-ACNLGLCLIKRTR--------------YNEARSVLEDVLYG 185 (261)
Q Consensus 144 ~~~~~al~~~P~~~~-~~~L~~~l~~~g~--------------~~eA~~~~~~~l~~ 185 (261)
..|++++..+|++.. +.++|.++...|+ +++|++++++++..
T Consensus 93 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~ 149 (172)
T PRK02603 93 EYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRL 149 (172)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhh
Confidence 888888888888777 7777888877776 45566666666654
No 78
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.25 E-value=2.2e-11 Score=104.99 Aligned_cols=180 Identities=16% Similarity=0.119 Sum_probs=136.4
Q ss_pred hhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHH
Q 024858 4 LVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQI 83 (261)
Q Consensus 4 ~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~ 83 (261)
-+-+++..|+..|...+...|.+...+..++.++..++++++|.++|+.+++++|.+ .......+.-|.=-|+.+-|.
T Consensus 267 ~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~n--vEaiAcia~~yfY~~~PE~Al 344 (478)
T KOG1129|consen 267 QRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPIN--VEAIACIAVGYFYDNNPEMAL 344 (478)
T ss_pred HHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCcc--ceeeeeeeeccccCCChHHHH
Confidence 345678888999999998889988888889999999999999999999999998874 223333555666778899999
Q ss_pred HHHHHHHHhh-cchhhhcCcc---------hHHHhhchhhhhhhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 024858 84 EMLKRKLRLI-YQGEAFNGKP---------TKTARSHGKKFQVSVRQE-TSRLLGNLAWAYMQKTNFMAAEVVYQKAQMI 152 (261)
Q Consensus 84 ~~~~~al~l~-~~~~~~~~~~---------~~~~~~~~~~~~~~l~p~-~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~ 152 (261)
.+|++.|.+- ..++.|++.. .-...+..+.....-.|+ -+++|+|||.+...-|++.-|..+|+-+|.-
T Consensus 345 ryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~ 424 (478)
T KOG1129|consen 345 RYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS 424 (478)
T ss_pred HHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhcc
Confidence 9999988873 2223333100 000000000010111122 4789999999999999999999999999999
Q ss_pred CCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 153 DPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 153 ~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
||++.. ..|||..-.+.|+.++|..++..+-..
T Consensus 425 d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 425 DAQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred CcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 999999 999999999999999999999988776
No 79
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.25 E-value=2.4e-10 Score=85.55 Aligned_cols=108 Identities=16% Similarity=0.150 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchh-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHH
Q 024858 28 SALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQS-QESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKT 106 (261)
Q Consensus 28 ~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~-~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~ 106 (261)
+++..+|..+..+|++++|+..+++++..+|++. .......+|.++.+.|++++|+..|++++...|.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---------- 72 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKS---------- 72 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCC----------
Confidence 4566777777777777777777777777777531 12244557777777777777777777777654310
Q ss_pred HhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh
Q 024858 107 ARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK 158 (261)
Q Consensus 107 ~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~ 158 (261)
|..+.++.++|.++..+|++++|+..|++++...|++..
T Consensus 73 -------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 73 -------------PKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred -------------CcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChh
Confidence 112456777777777777777777777777777777654
No 80
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.25 E-value=2.7e-10 Score=92.02 Aligned_cols=108 Identities=16% Similarity=0.173 Sum_probs=90.8
Q ss_pred CChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCc
Q 024858 24 DRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQ-ESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGK 102 (261)
Q Consensus 24 p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~-~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~ 102 (261)
|....++..+|..+...|++++|+..+++++...|+... ......+|.+|...|++++|+..|++++.+.|
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-------- 103 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP-------- 103 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--------
Confidence 356677899999999999999999999999988776321 24566799999999999999999999998743
Q ss_pred chHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHhhCCCch
Q 024858 103 PTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTN--------------FMAAEVVYQKAQMIDPDAN 157 (261)
Q Consensus 103 ~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~--------------~~eA~~~~~~al~~~P~~~ 157 (261)
++...+.++|.+|..+|+ +++|++++++++..+|++.
T Consensus 104 ------------------~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~ 154 (172)
T PRK02603 104 ------------------KQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNY 154 (172)
T ss_pred ------------------ccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhH
Confidence 456788899999999887 6888899999999999874
No 81
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.25 E-value=1.5e-10 Score=104.17 Aligned_cols=91 Identities=20% Similarity=0.161 Sum_probs=85.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 024858 69 LIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQK 148 (261)
Q Consensus 69 L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~ 148 (261)
.|..+...|++++|+..|++++++. |+++.++.++|.+|..+|++++|+..+++
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~--------------------------P~~~~a~~~~a~~~~~~g~~~eAl~~~~~ 61 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD--------------------------PNNAELYADRAQANIKLGNFTEAVADANK 61 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC--------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4666788999999999999999974 46778999999999999999999999999
Q ss_pred HHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 149 AQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 149 al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
++.++|+++. ++++|.+|..+|++++|+..|++++..
T Consensus 62 Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l 99 (356)
T PLN03088 62 AIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASL 99 (356)
T ss_pred HHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 9999999999 999999999999999999999999998
No 82
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.25 E-value=1.7e-10 Score=112.64 Aligned_cols=160 Identities=14% Similarity=0.041 Sum_probs=129.2
Q ss_pred HHHHHHH-HcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 024858 14 VLFWKAI-NAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRL 92 (261)
Q Consensus 14 ~~~~~al-~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l 92 (261)
.|-|..+ +.+|.+..++..|...+...|++++|++.++..+...|+. ..+...+|.+|.+.+++.++.-. +++.+
T Consensus 17 ~~~r~~~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~--i~~yy~~G~l~~q~~~~~~~~lv--~~l~~ 92 (906)
T PRK14720 17 KWTRADANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKS--ISALYISGILSLSRRPLNDSNLL--NLIDS 92 (906)
T ss_pred hhhhcccccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcc--eehHHHHHHHHHhhcchhhhhhh--hhhhh
Confidence 3444444 4789999999999999999999999999999999999994 44666788899999999999888 77776
Q ss_pred hcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCC
Q 024858 93 IYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTR 171 (261)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~ 171 (261)
.+....... ....+.. +---+++..+++.||.||.++|++++|...|+++|+++|+|+. ..++|..|... +
T Consensus 93 ~~~~~~~~~-ve~~~~~------i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 93 FSQNLKWAI-VEHICDK------ILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-D 164 (906)
T ss_pred cccccchhH-HHHHHHH------HHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-h
Confidence 442211110 0000000 1112456679999999999999999999999999999999999 99999999999 9
Q ss_pred HHHHHHHHHHHHhC
Q 024858 172 YNEARSVLEDVLYG 185 (261)
Q Consensus 172 ~~eA~~~~~~~l~~ 185 (261)
+++|+.++.+++..
T Consensus 165 L~KA~~m~~KAV~~ 178 (906)
T PRK14720 165 KEKAITYLKKAIYR 178 (906)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999996
No 83
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.23 E-value=3.3e-09 Score=91.42 Aligned_cols=151 Identities=18% Similarity=0.092 Sum_probs=96.3
Q ss_pred CCHHHHHHHHHHHHHcCCC-----hHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHH
Q 024858 7 KDPEAAIVLFWKAINAGDR-----VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEE 81 (261)
Q Consensus 7 ~~~~~A~~~~~~al~~~p~-----~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~e 81 (261)
++|++|+..-++..+.+|. .+..+..|+..+....+.+.|+..+++++..+|+ ...+..++|+++...|+|..
T Consensus 155 reW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~--cvRAsi~lG~v~~~~g~y~~ 232 (389)
T COG2956 155 REWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKK--CVRASIILGRVELAKGDYQK 232 (389)
T ss_pred hHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc--ceehhhhhhHHHHhccchHH
Confidence 4445555554444444433 1233334555555555555555555555555555 23344455555555555555
Q ss_pred HHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchhhh
Q 024858 82 QIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQE-TSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKAC 160 (261)
Q Consensus 82 A~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~-~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~ 160 (261)
|++.++.+++.+| + .+.++..|-.||.++|+.++.+..++++.+..+......
T Consensus 233 AV~~~e~v~eQn~--------------------------~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l 286 (389)
T COG2956 233 AVEALERVLEQNP--------------------------EYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAEL 286 (389)
T ss_pred HHHHHHHHHHhCh--------------------------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHH
Confidence 5555555555432 2 256888999999999999999999999999988877666
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 161 NLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 161 ~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
.++..-..+.-.++|..+..+-+..
T Consensus 287 ~l~~lie~~~G~~~Aq~~l~~Ql~r 311 (389)
T COG2956 287 MLADLIELQEGIDAAQAYLTRQLRR 311 (389)
T ss_pred HHHHHHHHhhChHHHHHHHHHHHhh
Confidence 6777777777778888777776665
No 84
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.23 E-value=1.3e-09 Score=107.03 Aligned_cols=150 Identities=11% Similarity=-0.005 Sum_probs=124.7
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHH
Q 024858 3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ 82 (261)
Q Consensus 3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA 82 (261)
....|+.++|+.++++++...|.....+..+|.++..+|++++|+++|+++++.+|+++. +...|+.+|...|+.++|
T Consensus 78 ~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~--~l~gLa~~y~~~~q~~eA 155 (822)
T PRK14574 78 AGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPD--LISGMIMTQADAGRGGVV 155 (822)
T ss_pred HHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH--HHHHHHHHHhhcCCHHHH
Confidence 345699999999999999544555666666688999999999999999999999999643 444678999999999999
Q ss_pred HHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhh
Q 024858 83 IEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACN 161 (261)
Q Consensus 83 ~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~ 161 (261)
++.+++++...| ++.. ...++.++..+++..+|+..|+++++.+|++.. ...
T Consensus 156 l~~l~~l~~~dp--------------------------~~~~-~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~ 208 (822)
T PRK14574 156 LKQATELAERDP--------------------------TVQN-YMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKN 208 (822)
T ss_pred HHHHHHhcccCc--------------------------chHH-HHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 999999988754 1112 244566666788888899999999999999999 889
Q ss_pred HHHHHHHcCCHHHHHHHHHH
Q 024858 162 LGLCLIKRTRYNEARSVLED 181 (261)
Q Consensus 162 L~~~l~~~g~~~eA~~~~~~ 181 (261)
+..++...|-...|.+..++
T Consensus 209 ~~~~l~~~~~~~~a~~l~~~ 228 (822)
T PRK14574 209 HLEILQRNRIVEPALRLAKE 228 (822)
T ss_pred HHHHHHHcCCcHHHHHHHHh
Confidence 99999999999999887775
No 85
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.19 E-value=2.4e-09 Score=102.35 Aligned_cols=154 Identities=18% Similarity=0.170 Sum_probs=133.5
Q ss_pred hhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHH
Q 024858 4 LVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQI 83 (261)
Q Consensus 4 ~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~ 83 (261)
...|++++|+..+..+|+.+|.++.++..||.+|.++|+.+++....-.+..++|.+. ..+..++++..++|.++.|+
T Consensus 150 farg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~--e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 150 FARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDY--ELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred HHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCh--HHHHHHHHHHHhcccHHHHH
Confidence 4569999999999999999999999999999999999999999999999999999864 45566899999999999999
Q ss_pred HHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch-----h
Q 024858 84 EMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN-----K 158 (261)
Q Consensus 84 ~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~-----~ 158 (261)
-+|.+|+...| .+-......+.+|.++|+...|...|.+++.+.|... .
T Consensus 228 ~cy~rAI~~~p--------------------------~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d 281 (895)
T KOG2076|consen 228 YCYSRAIQANP--------------------------SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIED 281 (895)
T ss_pred HHHHHHHhcCC--------------------------cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHH
Confidence 99999999864 3345678889999999999999999999999999322 1
Q ss_pred -hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 159 -ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 159 -~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
....+..+...++-+.|+..++.++..
T Consensus 282 ~i~~~~~~~~~~~~~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 282 LIRRVAHYFITHNERERAAKALEGALSK 309 (895)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 234577888889889999999998883
No 86
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.19 E-value=2.1e-09 Score=89.80 Aligned_cols=177 Identities=17% Similarity=0.193 Sum_probs=124.9
Q ss_pred CHHHHHHHHHHHHH------cCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHH
Q 024858 8 DPEAAIVLFWKAIN------AGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEE 81 (261)
Q Consensus 8 ~~~~A~~~~~~al~------~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~e 81 (261)
+.++-.+.....+. .+|+.-..+-.+.++....|+.+-|...++......|+. ..+..+-|.++...|++++
T Consensus 27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S--~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGS--KRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCC--hhHHHHHHHHHHHhhchhh
Confidence 44444444444442 556656566666777777888888888888877777873 2344556777788888888
Q ss_pred HHHHHHHHHHhhcchhhhcCcchHHHhhchhhhh--------hhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 024858 82 QIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQ--------VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMID 153 (261)
Q Consensus 82 A~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~--------~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~ 153 (261)
|+++|+..|+-+|.+.+..-+........|+... +..=++++++|..|+.+|...|+|+.|.-+|++.+-+.
T Consensus 105 A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~ 184 (289)
T KOG3060|consen 105 AIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ 184 (289)
T ss_pred HHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC
Confidence 8888888887655333221000000111121110 23446889999999999999999999999999999999
Q ss_pred CCchh-hhhHHHHHHHcC---CHHHHHHHHHHHHhCC
Q 024858 154 PDANK-ACNLGLCLIKRT---RYNEARSVLEDVLYGR 186 (261)
Q Consensus 154 P~~~~-~~~L~~~l~~~g---~~~eA~~~~~~~l~~~ 186 (261)
|-++- +..||.++.-+| +++-|..+|.+++..+
T Consensus 185 P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 185 PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 99998 889999998887 6777899999999983
No 87
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.18 E-value=1.8e-09 Score=105.69 Aligned_cols=140 Identities=13% Similarity=0.095 Sum_probs=115.1
Q ss_pred hhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchh-----------------HHHHH
Q 024858 4 LVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQS-----------------QESLD 66 (261)
Q Consensus 4 ~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~-----------------~~~~~ 66 (261)
..++++++|+..++.++...|+....+..+|.++.+.+++.++.-. .++...+.+. +..+.
T Consensus 42 ~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al 119 (906)
T PRK14720 42 KSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLAL 119 (906)
T ss_pred HhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHHH
Confidence 4689999999999999999999999999999999999999988766 5555444321 11356
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 024858 67 NVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVY 146 (261)
Q Consensus 67 ~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~ 146 (261)
..||.+|.+.|++++|...|+++|+++ |+++.+++|+|..|... +.++|+.++
T Consensus 120 ~~LA~~Ydk~g~~~ka~~~yer~L~~D--------------------------~~n~~aLNn~AY~~ae~-dL~KA~~m~ 172 (906)
T PRK14720 120 RTLAEAYAKLNENKKLKGVWERLVKAD--------------------------RDNPEIVKKLATSYEEE-DKEKAITYL 172 (906)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcC--------------------------cccHHHHHHHHHHHHHh-hHHHHHHHH
Confidence 679999999999999999999999974 46788999999999999 999999999
Q ss_pred HHHHhhCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 147 QKAQMIDPDANKACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 147 ~~al~~~P~~~~~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
.+|+.. ++..+++.++..+..+.+..
T Consensus 173 ~KAV~~-------------~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 173 KKAIYR-------------FIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred HHHHHH-------------HHhhhcchHHHHHHHHHHhc
Confidence 999987 44445555666655555554
No 88
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.18 E-value=1.7e-09 Score=104.14 Aligned_cols=181 Identities=18% Similarity=0.159 Sum_probs=129.0
Q ss_pred hhcCCHHHHHHHHHHHHHcCCCh-HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH---cCCH
Q 024858 4 LVQKDPEAAIVLFWKAINAGDRV-DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKK---CGKV 79 (261)
Q Consensus 4 ~~~~~~~~A~~~~~~al~~~p~~-~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~---~g~~ 79 (261)
+..||+-.|+.+|++++..+|.. ++....+|.++.++|+.+.|+.++.+++.++|... .....||.+-.. ...+
T Consensus 175 ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v--~alv~L~~~~l~~~d~~s~ 252 (1018)
T KOG2002|consen 175 YNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCV--SALVALGEVDLNFNDSDSY 252 (1018)
T ss_pred hccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhH--HHHHHHHHHHHHccchHHH
Confidence 45788999999999999888764 34455678888899999999999999999999742 333334443333 3447
Q ss_pred HHHHHHHHHHHHhhcchh-hhc---------CcchHHHhhchhhhh-hhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 024858 80 EEQIEMLKRKLRLIYQGE-AFN---------GKPTKTARSHGKKFQ-VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQK 148 (261)
Q Consensus 80 ~eA~~~~~~al~l~~~~~-~~~---------~~~~~~~~~~~~~~~-~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~ 148 (261)
..+...+.++...++.+. +.+ +.......--...+. -..++--++..+.+|.+|..+|+|++|..+|.+
T Consensus 253 ~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~ 332 (1018)
T KOG2002|consen 253 KKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYME 332 (1018)
T ss_pred HHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 778888888888754322 111 000000000000011 012223456789999999999999999999999
Q ss_pred HHhhCCCch-h-hhhHHHHHHHcCCHHHHHHHHHHHHhCC
Q 024858 149 AQMIDPDAN-K-ACNLGLCLIKRTRYNEARSVLEDVLYGR 186 (261)
Q Consensus 149 al~~~P~~~-~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~ 186 (261)
+++.+|++. - ++.||..|+..|++++|+..|++++...
T Consensus 333 s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~ 372 (1018)
T KOG2002|consen 333 SLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL 372 (1018)
T ss_pred HHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC
Confidence 999999994 3 8899999999999999999999999973
No 89
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.17 E-value=2.5e-09 Score=83.90 Aligned_cols=121 Identities=18% Similarity=0.103 Sum_probs=94.1
Q ss_pred HcCCcHHHHHHHHHHHhcCCchhH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhh
Q 024858 39 QLDRSEEAIEAIKSFRGLCSKQSQ-ESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVS 117 (261)
Q Consensus 39 ~~g~~~eAi~~~~~~~~~~P~~~~-~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (261)
..++...+...++.++..+|+... ......++.++...|++++|+..|++++...+... +
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~----------------l--- 83 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPE----------------L--- 83 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHH----------------H---
Confidence 678888888899999999997422 23456689999999999999999999988532100 0
Q ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHH
Q 024858 118 VRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVL 183 (261)
Q Consensus 118 l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l 183 (261)
.+.+...||.++..+|++++|+..++.+ .-.+-.+. +..+|.+|..+|++++|+..|++++
T Consensus 84 ----~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 84 ----KPLARLRLARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred ----HHHHHHHHHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 1346788999999999999999999762 22222333 5678999999999999999999875
No 90
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.17 E-value=5.8e-10 Score=77.99 Aligned_cols=61 Identities=26% Similarity=0.290 Sum_probs=30.1
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 024858 30 LKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRL 92 (261)
Q Consensus 30 l~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l 92 (261)
+..+|.++..+|++++|+..++++++..|.+. .+...++.+|...|++++|+..+++++.+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 63 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNA--DAYYNLAAAYYKLGKYEEALEDYEKALEL 63 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34455555555555555555555555555421 22333455555555555555555555443
No 91
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=5.8e-10 Score=98.69 Aligned_cols=160 Identities=16% Similarity=0.098 Sum_probs=137.8
Q ss_pred hhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHH----------HHHHHHHHHH
Q 024858 4 LVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQE----------SLDNVLIDLY 73 (261)
Q Consensus 4 ~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~----------~~~~~L~~ly 73 (261)
...|++++|...--.++++++.+.+++..-|.++.-.+..+.|+..+.+++.++|+.-.. .....-|+-.
T Consensus 180 ~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~ 259 (486)
T KOG0550|consen 180 AFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDA 259 (486)
T ss_pred hhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhH
Confidence 467899999999999999999999999999999999999999999999999999972100 0112234555
Q ss_pred HHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 024858 74 KKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMID 153 (261)
Q Consensus 74 ~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~ 153 (261)
.+.|++.+|.+.|..+|.++|... ..++..+.|.+.+..+.|+..||+.-...|+++|
T Consensus 260 fk~G~y~~A~E~Yteal~idP~n~----------------------~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD 317 (486)
T KOG0550|consen 260 FKNGNYRKAYECYTEALNIDPSNK----------------------KTNAKLYGNRALVNIRLGRLREAISDCNEALKID 317 (486)
T ss_pred hhccchhHHHHHHHHhhcCCcccc----------------------chhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC
Confidence 789999999999999999976311 0135578999999999999999999999999999
Q ss_pred CCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 154 PDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 154 P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
|.... +..-|.|+..++++++|.+.|+++.+.
T Consensus 318 ~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 318 SSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99998 778899999999999999999999997
No 92
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.16 E-value=1.7e-10 Score=81.92 Aligned_cols=83 Identities=31% Similarity=0.406 Sum_probs=70.7
Q ss_pred HcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 024858 75 KCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDP 154 (261)
Q Consensus 75 ~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P 154 (261)
.+|++++|+..++++++..|.+ | +..++.++|.+|.++|++++|+..+++ +..+|
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~-----------------------~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~ 55 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTN-----------------------P-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP 55 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGT-----------------------H-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCC-----------------------h-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC
Confidence 3689999999999999985410 0 345788899999999999999999999 99999
Q ss_pred Cchh-hhhHHHHHHHcCCHHHHHHHHHHH
Q 024858 155 DANK-ACNLGLCLIKRTRYNEARSVLEDV 182 (261)
Q Consensus 155 ~~~~-~~~L~~~l~~~g~~~eA~~~~~~~ 182 (261)
.+.. ++.+|.|+.++|++++|+.+++++
T Consensus 56 ~~~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 56 SNPDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp CHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 9987 788899999999999999999875
No 93
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.16 E-value=1.7e-09 Score=84.87 Aligned_cols=120 Identities=17% Similarity=0.093 Sum_probs=97.3
Q ss_pred hhcCCHHHHHHHHHHHHHcCCCh---HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchh-HHHHHHHHHHHHHHcCCH
Q 024858 4 LVQKDPEAAIVLFWKAINAGDRV---DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQS-QESLDNVLIDLYKKCGKV 79 (261)
Q Consensus 4 ~~~~~~~~A~~~~~~al~~~p~~---~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~-~~~~~~~L~~ly~~~g~~ 79 (261)
+..++...+...+...+...|+. ..+...+|.++...|++++|+..|+.++...|+.. .......|+.++...|++
T Consensus 22 ~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~ 101 (145)
T PF09976_consen 22 LQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQY 101 (145)
T ss_pred HHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 35788999999999999988887 45577799999999999999999999999877631 122345589999999999
Q ss_pred HHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 024858 80 EEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQ 150 (261)
Q Consensus 80 ~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al 150 (261)
++|+..++....- +-.+.++..+|.+|..+|++++|...|++||
T Consensus 102 d~Al~~L~~~~~~---------------------------~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 102 DEALATLQQIPDE---------------------------AFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHhccCc---------------------------chHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 9999999662110 0124567789999999999999999999985
No 94
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.15 E-value=2.6e-10 Score=76.77 Aligned_cols=63 Identities=21% Similarity=0.267 Sum_probs=43.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 024858 69 LIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQK 148 (261)
Q Consensus 69 L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~ 148 (261)
+|..+.+.|++++|+..|+++++.. |++++++..+|.++.++|++++|+..|++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~--------------------------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 56 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD--------------------------PDNPEAWYLLGRILYQQGRYDEALAYYER 56 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS--------------------------TTHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC--------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5666677777777777777777653 34566777777777777777777777777
Q ss_pred HHhhCCCch
Q 024858 149 AQMIDPDAN 157 (261)
Q Consensus 149 al~~~P~~~ 157 (261)
+++++|+++
T Consensus 57 a~~~~P~~p 65 (65)
T PF13432_consen 57 ALELDPDNP 65 (65)
T ss_dssp HHHHSTT-H
T ss_pred HHHHCcCCC
Confidence 777777764
No 95
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=2.2e-09 Score=97.74 Aligned_cols=144 Identities=19% Similarity=0.210 Sum_probs=120.3
Q ss_pred cCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHH
Q 024858 6 QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEM 85 (261)
Q Consensus 6 ~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~ 85 (261)
.++++.|+.+|.+++.-.-. ..++.+....+++....+...-.+|.-+. -...-|+-+.+.|+|.+|+..
T Consensus 311 ~~~~~~ai~~~~kaLte~Rt--------~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~--e~r~kGne~Fk~gdy~~Av~~ 380 (539)
T KOG0548|consen 311 REDYEGAIKYYQKALTEHRT--------PDLLSKLKEAEKALKEAERKAYINPEKAE--EEREKGNEAFKKGDYPEAVKH 380 (539)
T ss_pred HHhHHHHHHHHHHHhhhhcC--------HHHHHHHHHHHHHHHHHHHHHhhChhHHH--HHHHHHHHHHhccCHHHHHHH
Confidence 37788888888887752211 45666677778888888777778887322 233357888999999999999
Q ss_pred HHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHH
Q 024858 86 LKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGL 164 (261)
Q Consensus 86 ~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~ 164 (261)
|.++++.+ |+++.++.|.|.||...|.+.+|++-.+++++++|++.. +..-|.
T Consensus 381 YteAIkr~--------------------------P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~ 434 (539)
T KOG0548|consen 381 YTEAIKRD--------------------------PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGA 434 (539)
T ss_pred HHHHHhcC--------------------------CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence 99998874 578889999999999999999999999999999999999 888899
Q ss_pred HHHHcCCHHHHHHHHHHHHhC
Q 024858 165 CLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 165 ~l~~~g~~~eA~~~~~~~l~~ 185 (261)
++..+.+|++|++.|++++..
T Consensus 435 al~~mk~ydkAleay~eale~ 455 (539)
T KOG0548|consen 435 ALRAMKEYDKALEAYQEALEL 455 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999997
No 96
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.14 E-value=6.7e-10 Score=104.18 Aligned_cols=140 Identities=12% Similarity=-0.082 Sum_probs=82.6
Q ss_pred HcCCChHHHHHH--HHHHHHHcCC---cHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHc--------CCHHHHHHHHH
Q 024858 21 NAGDRVDSALKD--MAVVMKQLDR---SEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKC--------GKVEEQIEMLK 87 (261)
Q Consensus 21 ~~~p~~~~al~~--Lg~~~~~~g~---~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~--------g~~~eA~~~~~ 87 (261)
...|.+++++.. -|.-+...+. +..|+.+++++++++|+++.. +..++.+|... ++...+.+..+
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a--~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYA--QAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHH--HHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 344555544332 3444444433 667777777777777774322 22223333221 23455566666
Q ss_pred HHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHH
Q 024858 88 RKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCL 166 (261)
Q Consensus 88 ~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l 166 (261)
+++.+.. .|..+.++.-+|.++...|++++|...|++|+.++|+ .. +..+|.++
T Consensus 409 ~a~al~~------------------------~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~ 463 (517)
T PRK10153 409 NIVALPE------------------------LNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVY 463 (517)
T ss_pred Hhhhccc------------------------CcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHH
Confidence 6555410 1234456666777777777777777777777777774 44 66777777
Q ss_pred HHcCCHHHHHHHHHHHHhCCC
Q 024858 167 IKRTRYNEARSVLEDVLYGRI 187 (261)
Q Consensus 167 ~~~g~~~eA~~~~~~~l~~~~ 187 (261)
...|++++|+..|++++..++
T Consensus 464 ~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 464 ELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred HHcCCHHHHHHHHHHHHhcCC
Confidence 777777777777777777643
No 97
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.11 E-value=5.9e-09 Score=99.73 Aligned_cols=133 Identities=17% Similarity=0.080 Sum_probs=118.3
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHH
Q 024858 27 DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKT 106 (261)
Q Consensus 27 ~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~ 106 (261)
...+...|..+..+|++++|+.++..+++.+|.+ ...+..||.+|.++|+.+++....-.|-.+
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~--~~ay~tL~~IyEqrGd~eK~l~~~llAAHL-------------- 202 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRN--PIAYYTLGEIYEQRGDIEKALNFWLLAAHL-------------- 202 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccc--hhhHHHHHHHHHHcccHHHHHHHHHHHHhc--------------
Confidence 3456667888899999999999999999999984 345677999999999999999877766554
Q ss_pred HhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 107 ARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 107 ~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
+|++.+.|..++....++|+++.|.-+|.+|++.+|++.. ...-+..|.++|++..|..-|.+++..
T Consensus 203 ------------~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~ 270 (895)
T KOG2076|consen 203 ------------NPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQL 270 (895)
T ss_pred ------------CCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhh
Confidence 4567789999999999999999999999999999999998 889999999999999999999999998
Q ss_pred CC
Q 024858 186 RI 187 (261)
Q Consensus 186 ~~ 187 (261)
.+
T Consensus 271 ~p 272 (895)
T KOG2076|consen 271 DP 272 (895)
T ss_pred CC
Confidence 44
No 98
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.11 E-value=1.4e-09 Score=75.96 Aligned_cols=93 Identities=34% Similarity=0.394 Sum_probs=84.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 024858 67 NVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVY 146 (261)
Q Consensus 67 ~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~ 146 (261)
..+|.++...|++++|+..++++++..| +++.++..+|.++...|++++|+..|
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~a~~~~ 57 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELDP--------------------------DNADAYYNLAAAYYKLGKYEEALEDY 57 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcCC--------------------------ccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478888999999999999999988743 34568899999999999999999999
Q ss_pred HHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 147 QKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 147 ~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
++++...|.+.. +..+|.++..+|++++|...+.+++..
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 58 EKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence 999999999998 899999999999999999999999875
No 99
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=6.4e-09 Score=89.19 Aligned_cols=120 Identities=18% Similarity=0.186 Sum_probs=102.2
Q ss_pred cHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCc
Q 024858 43 SEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQET 122 (261)
Q Consensus 43 ~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~ 122 (261)
.++-+.-++..+..+|+++.. +.+||.+|..+|+++.|...|++++++. |++
T Consensus 138 ~~~l~a~Le~~L~~nP~d~eg--W~~Lg~~ym~~~~~~~A~~AY~~A~rL~--------------------------g~n 189 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEG--WDLLGRAYMALGRASDALLAYRNALRLA--------------------------GDN 189 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchh--HHHHHHHHHHhcchhHHHHHHHHHHHhC--------------------------CCC
Confidence 445566778889999997533 3459999999999999999999999974 567
Q ss_pred HHHHHHHHHHHHHc---CCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 024858 123 SRLLGNLAWAYMQK---TNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGC 190 (261)
Q Consensus 123 ~~~~~~Lg~~~~~~---g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~~~~~ 190 (261)
++++..+|.++..+ ....++...+++++..||++.. ..-||..+.++|+|.+|+..++..+...+++.
T Consensus 190 ~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 190 PEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 88999999998665 4567899999999999999999 88999999999999999999999999844333
No 100
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.10 E-value=3e-09 Score=79.47 Aligned_cols=97 Identities=16% Similarity=0.148 Sum_probs=84.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 024858 66 DNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVV 145 (261)
Q Consensus 66 ~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~ 145 (261)
...+|..+.+.|++++|+..|++++...|.. |..+.+++.+|.++...|++++|+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-----------------------~~~~~~~~~l~~~~~~~~~~~~A~~~ 61 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKS-----------------------TYAPNAHYWLGEAYYAQGKYADAAKA 61 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc-----------------------cccHHHHHHHHHHHHhhccHHHHHHH
Confidence 3457888899999999999999998864310 11256889999999999999999999
Q ss_pred HHHHHhhCCCch---h-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 146 YQKAQMIDPDAN---K-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 146 ~~~al~~~P~~~---~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
|++++..+|++. . +..+|.++..+|++++|+.++++++..
T Consensus 62 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 62 FLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 999999999863 4 789999999999999999999999997
No 101
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=99.09 E-value=5.7e-09 Score=79.11 Aligned_cols=110 Identities=24% Similarity=0.152 Sum_probs=88.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 024858 66 DNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVV 145 (261)
Q Consensus 66 ~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~ 145 (261)
...++.++...|+.++|+..|++++..-.++ +.-.+++..+|.+|..+|++++|+..
T Consensus 4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~-----------------------~~~~~a~i~lastlr~LG~~deA~~~ 60 (120)
T PF12688_consen 4 LYELAWAHDSLGREEEAIPLYRRALAAGLSG-----------------------ADRRRALIQLASTLRNLGRYDEALAL 60 (120)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc-----------------------hHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3447888899999999999999999863211 01245889999999999999999999
Q ss_pred HHHHHhhCCC---chh-hhhHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchhhHHHHHHHHH
Q 024858 146 YQKAQMIDPD---ANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELLL 204 (261)
Q Consensus 146 ~~~al~~~P~---~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~a~~~l~ 204 (261)
+++++...|+ +.. ...++.++...|+++||+..+-.++.. +...++++.....
T Consensus 61 L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la~------~~~~y~ra~~~ya 117 (120)
T PF12688_consen 61 LEEALEEFPDDELNAALRVFLALALYNLGRPKEALEWLLEALAE------TLPRYRRAIRFYA 117 (120)
T ss_pred HHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH------HHHHHHHHHHHHH
Confidence 9999999898 556 678899999999999999999998885 2235666655543
No 102
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.08 E-value=4.5e-09 Score=94.26 Aligned_cols=201 Identities=15% Similarity=0.038 Sum_probs=135.3
Q ss_pred CCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024858 7 KDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEML 86 (261)
Q Consensus 7 ~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~ 86 (261)
+++..|-.+-..|+..+--++.++.+-|.+-...|++++|.+.|+.++.-+.. -.....+.|-.+..+|+.++|+++|
T Consensus 470 k~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndas--c~ealfniglt~e~~~~ldeald~f 547 (840)
T KOG2003|consen 470 KDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDAS--CTEALFNIGLTAEALGNLDEALDCF 547 (840)
T ss_pred cchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchH--HHHHHHHhcccHHHhcCHHHHHHHH
Confidence 35556666666666666667777777777778888888888888888866554 3333444677788888888888888
Q ss_pred HHHHHhhcch-hhhcCcchHHHhhchhhh-------h-hhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch
Q 024858 87 KRKLRLIYQG-EAFNGKPTKTARSHGKKF-------Q-VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN 157 (261)
Q Consensus 87 ~~al~l~~~~-~~~~~~~~~~~~~~~~~~-------~-~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~ 157 (261)
-+.-.+--.. ..+. ............. + ..+-|++|.++.-||.+|.+.|+...|..++-......|-|.
T Consensus 548 ~klh~il~nn~evl~-qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~ni 626 (840)
T KOG2003|consen 548 LKLHAILLNNAEVLV-QIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNI 626 (840)
T ss_pred HHHHHHHHhhHHHHH-HHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcch
Confidence 8765542111 1110 0011111111111 1 366688888888999999999999999988888888888888
Q ss_pred h-hhhHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-----------cchhhHHHHHHHHHHHHhcCC
Q 024858 158 K-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGC-----------EDGRTRKRAEELLLELESKQP 211 (261)
Q Consensus 158 ~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~~~~~-----------~~~~~~~~a~~~l~~l~~~~~ 211 (261)
. ...||..|+...=.++|+.+++++--.. |.. ....++++|.+.++.+-...|
T Consensus 627 e~iewl~ayyidtqf~ekai~y~ekaaliq-p~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfp 691 (840)
T KOG2003|consen 627 ETIEWLAAYYIDTQFSEKAINYFEKAALIQ-PNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFP 691 (840)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHhcC-ccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCc
Confidence 7 6778888888888889999998876651 221 124566777777777644333
No 103
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.08 E-value=3.1e-09 Score=102.49 Aligned_cols=178 Identities=18% Similarity=0.206 Sum_probs=144.4
Q ss_pred cCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHH
Q 024858 6 QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEM 85 (261)
Q Consensus 6 ~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~ 85 (261)
.++...|...|-++++++|..+.++..||.+|+...+...|.+.|.++..++|.++ ......++.|.+...+++|...
T Consensus 471 rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatda--eaaaa~adtyae~~~we~a~~I 548 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDA--EAAAASADTYAEESTWEEAFEI 548 (1238)
T ss_pred hhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhh--hhHHHHHHHhhccccHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999854 3455689999999999999998
Q ss_pred HHHHHHhhcchh----hhc-Cc-chHHHhhchh--hhh--hhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 024858 86 LKRKLRLIYQGE----AFN-GK-PTKTARSHGK--KFQ--VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPD 155 (261)
Q Consensus 86 ~~~al~l~~~~~----~~~-~~-~~~~~~~~~~--~~~--~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~ 155 (261)
.-.+-+..+... +.- |. ..+....|+. .|+ +.++|++-..|..||.+|...|++.-|++.|.+|..++|+
T Consensus 549 ~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~ 628 (1238)
T KOG1127|consen 549 CLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPL 628 (1238)
T ss_pred HHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH
Confidence 666655544321 111 10 0010111121 133 6888999999999999999999999999999999999999
Q ss_pred chh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 156 ANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 156 ~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
+.. .+..+......|+|.+|...+..++..
T Consensus 629 s~y~~fk~A~~ecd~GkYkeald~l~~ii~~ 659 (1238)
T KOG1127|consen 629 SKYGRFKEAVMECDNGKYKEALDALGLIIYA 659 (1238)
T ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 998 888899999999999999999988874
No 104
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.07 E-value=6.6e-10 Score=78.89 Aligned_cols=81 Identities=27% Similarity=0.282 Sum_probs=68.7
Q ss_pred cCCHHHHHHHHHHHHHcCCC--hHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHH
Q 024858 6 QKDPEAAIVLFWKAINAGDR--VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQI 83 (261)
Q Consensus 6 ~~~~~~A~~~~~~al~~~p~--~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~ 83 (261)
.|+++.|+.+|++++..+|. +...+..+|.++.++|++++|+..+++ ...+|.+ .....++|.+|.++|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~--~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSN--PDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCH--HHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCC--HHHHHHHHHHHHHhCCHHHHH
Confidence 58999999999999998884 567788899999999999999999999 7777763 334556799999999999999
Q ss_pred HHHHHH
Q 024858 84 EMLKRK 89 (261)
Q Consensus 84 ~~~~~a 89 (261)
++|+++
T Consensus 79 ~~l~~~ 84 (84)
T PF12895_consen 79 KALEKA 84 (84)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 999875
No 105
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.07 E-value=5.2e-10 Score=75.32 Aligned_cols=59 Identities=31% Similarity=0.323 Sum_probs=55.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 127 GNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 127 ~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
+.+|..+.++|++++|+..|+++++.+|++.. +..+|.++..+|++++|+.+|++++..
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999 999999999999999999999999997
No 106
>PRK15331 chaperone protein SicA; Provisional
Probab=99.07 E-value=8.6e-09 Score=81.48 Aligned_cols=112 Identities=19% Similarity=0.124 Sum_probs=96.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 024858 69 LIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQK 148 (261)
Q Consensus 69 L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~ 148 (261)
.|.=+..+|++++|..+|+-+...+ |.+++.+..||.|+..+++|++|+..|-.
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d--------------------------~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~ 96 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYD--------------------------FYNPDYTMGLAAVCQLKKQFQKACDLYAV 96 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--------------------------cCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555578999999999999876653 34678899999999999999999999999
Q ss_pred HHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchhhHHHHHHHHHHHHhcC
Q 024858 149 AQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELLLELESKQ 210 (261)
Q Consensus 149 al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~a~~~l~~l~~~~ 210 (261)
+..++++++. .+..|.|++.+|+.++|...|+.++.. +.+..-.++|..+|..+....
T Consensus 97 A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~~----~~~~~l~~~A~~~L~~l~~~~ 155 (165)
T PRK15331 97 AFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNER----TEDESLRAKALVYLEALKTAE 155 (165)
T ss_pred HHHcccCCCCccchHHHHHHHhCCHHHHHHHHHHHHhC----cchHHHHHHHHHHHHHHHccc
Confidence 9999999998 999999999999999999999999994 445555678888998887544
No 107
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=7.3e-09 Score=88.87 Aligned_cols=125 Identities=17% Similarity=0.178 Sum_probs=104.9
Q ss_pred CCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHH-HHcC--CHHHHH
Q 024858 7 KDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLY-KKCG--KVEEQI 83 (261)
Q Consensus 7 ~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly-~~~g--~~~eA~ 83 (261)
-..+.-+.-.+..+..+|++++-|..||.+|..+|++..|..+|++++++.|+++.. ...++.++ ...| ...++.
T Consensus 136 ~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~--~~g~aeaL~~~a~~~~ta~a~ 213 (287)
T COG4235 136 QEMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEI--LLGLAEALYYQAGQQMTAKAR 213 (287)
T ss_pred ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHH--HHHHHHHHHHhcCCcccHHHH
Confidence 346777888889999999999999999999999999999999999999999996543 32345443 3333 356788
Q ss_pred HHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchhh
Q 024858 84 EMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA 159 (261)
Q Consensus 84 ~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~ 159 (261)
.+++++++++ |++..+++.||..++++|+|.+|+..++..+...|.+..+
T Consensus 214 ~ll~~al~~D--------------------------~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~r 263 (287)
T COG4235 214 ALLRQALALD--------------------------PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPR 263 (287)
T ss_pred HHHHHHHhcC--------------------------CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCch
Confidence 9999998874 4677899999999999999999999999999999987763
No 108
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.06 E-value=5.2e-08 Score=98.31 Aligned_cols=203 Identities=11% Similarity=0.078 Sum_probs=136.9
Q ss_pred hhcCCHHHHHHHHHHHHH----cCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCH
Q 024858 4 LVQKDPEAAIVLFWKAIN----AGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKV 79 (261)
Q Consensus 4 ~~~~~~~~A~~~~~~al~----~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~ 79 (261)
...|++++|..+|..... ..|+ ..++..|-..|.+.|++++|.+.++.+.+.+... ....++.++..|.+.|++
T Consensus 553 ~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p-~~~tynsLI~ay~k~G~~ 630 (1060)
T PLN03218 553 GQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACANAGQVDRAKEVYQMIHEYNIKG-TPEVYTIAVNSCSQKGDW 630 (1060)
T ss_pred HHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC-ChHHHHHHHHHHHhcCCH
Confidence 456889999999988765 3455 3467778888899999999999999888765321 233567788889999999
Q ss_pred HHHHHHHHHHHHhh--cchhhhc---------CcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 024858 80 EEQIEMLKRKLRLI--YQGEAFN---------GKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQK 148 (261)
Q Consensus 80 ~eA~~~~~~al~l~--~~~~~~~---------~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~ 148 (261)
++|+.+|++..+.. |....++ +.......-+......-+.| +..+++.|..+|.+.|++++|+..|++
T Consensus 631 deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p-d~~tynsLI~ay~k~G~~eeA~~lf~e 709 (1060)
T PLN03218 631 DFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL-GTVSYSSLMGACSNAKNWKKALELYED 709 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 99999999887652 2211222 11110000000000011122 356788899999999999999999998
Q ss_pred HHh--hCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCCC----------cchhhHHHHHHHHHHHHhc
Q 024858 149 AQM--IDPDANKACNLGLCLIKRTRYNEARSVLEDVLYGR-IPGC----------EDGRTRKRAEELLLELESK 209 (261)
Q Consensus 149 al~--~~P~~~~~~~L~~~l~~~g~~~eA~~~~~~~l~~~-~~~~----------~~~~~~~~a~~~l~~l~~~ 209 (261)
... +.|+...|..|...|.+.|++++|.+++++..... .|+. ...+.++.|..++..+...
T Consensus 710 M~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~ 783 (1060)
T PLN03218 710 IKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKED 783 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 865 45665558889999999999999999999887642 1221 1245566677777776543
No 109
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.06 E-value=5.4e-09 Score=90.00 Aligned_cols=62 Identities=13% Similarity=0.085 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch---h-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 124 RLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN---K-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 124 ~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~---~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
.+++.||.+|..+|++++|+..|++++...|+++ + ++.+|.++..+|++++|...|++++..
T Consensus 181 ~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 181 NANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555555543 2 344555555555555555555555554
No 110
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.04 E-value=3.8e-08 Score=83.93 Aligned_cols=172 Identities=12% Similarity=0.004 Sum_probs=126.0
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCChHHH---HHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHH-HHHHHHHHHHHHcC-
Q 024858 3 QLVQKDPEAAIVLFWKAINAGDRVDSA---LKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQE-SLDNVLIDLYKKCG- 77 (261)
Q Consensus 3 ~~~~~~~~~A~~~~~~al~~~p~~~~a---l~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~-~~~~~L~~ly~~~g- 77 (261)
.+..|++++|+..|++++...|..+.+ ...+|.++.+++++++|+..++++++.+|+++.. .+...+|..+...+
T Consensus 42 ~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~ 121 (243)
T PRK10866 42 KLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDD 121 (243)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcch
Confidence 356799999999999999988876555 4789999999999999999999999999985322 23445665543333
Q ss_pred -----------------CHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHH
Q 024858 78 -----------------KVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFM 140 (261)
Q Consensus 78 -----------------~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~ 140 (261)
...+|+..+++.++..|... +.. .+. ..+ ..++-..+.--..+|..|.+.|+|.
T Consensus 122 ~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~-ya~----~A~---~rl-~~l~~~la~~e~~ia~~Y~~~~~y~ 192 (243)
T PRK10866 122 SALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQ-YTT----DAT---KRL-VFLKDRLAKYELSVAEYYTKRGAYV 192 (243)
T ss_pred hhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCCh-hHH----HHH---HHH-HHHHHHHHHHHHHHHHHHHHcCchH
Confidence 14678899999999865322 110 000 000 0000011233457899999999999
Q ss_pred HHHHHHHHHHhhCCCchh----hhhHHHHHHHcCCHHHHHHHHHHHH
Q 024858 141 AAEVVYQKAQMIDPDANK----ACNLGLCLIKRTRYNEARSVLEDVL 183 (261)
Q Consensus 141 eA~~~~~~al~~~P~~~~----~~~L~~~l~~~g~~~eA~~~~~~~l 183 (261)
.|+.-++.+++-.|+.+. ..-++.+|..+|..++|..+...+.
T Consensus 193 AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 193 AVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 999999999999998873 5678999999999999988776543
No 111
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.04 E-value=3.2e-08 Score=86.27 Aligned_cols=184 Identities=24% Similarity=0.258 Sum_probs=127.2
Q ss_pred hcCCHHHHHHHHHHHHHc----CC--ChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCC-----chhHHHHHHHHHHHH
Q 024858 5 VQKDPEAAIVLFWKAINA----GD--RVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCS-----KQSQESLDNVLIDLY 73 (261)
Q Consensus 5 ~~~~~~~A~~~~~~al~~----~p--~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P-----~~~~~~~~~~L~~ly 73 (261)
..|++++|...|.++... +. ....++...+.++.+. ++++|+..|++++.+.- ..+ ......+|.+|
T Consensus 47 ~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~a-A~~~~~lA~~y 124 (282)
T PF14938_consen 47 LAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQA-AKCLKELAEIY 124 (282)
T ss_dssp HTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHH-HHHHHHHHHHH
T ss_pred HHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHH-HHHHHHHHHHH
Confidence 457777788888777642 11 1244566677777665 99999999999877532 222 23456689999
Q ss_pred HHc-CCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 024858 74 KKC-GKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMI 152 (261)
Q Consensus 74 ~~~-g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~ 152 (261)
... |++++|++.|++|+++.... +... .-...+.++|.++.+.|+|++|+..|+++...
T Consensus 125 e~~~~d~e~Ai~~Y~~A~~~y~~e--------------~~~~------~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~ 184 (282)
T PF14938_consen 125 EEQLGDYEKAIEYYQKAAELYEQE--------------GSPH------SAAECLLKAADLYARLGRYEEAIEIYEEVAKK 184 (282)
T ss_dssp CCTT--HHHHHHHHHHHHHHHHHT--------------T-HH------HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHC--------------CChh------hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 998 99999999999999984211 1000 01357789999999999999999999999875
Q ss_pred CCCc------h-h-hhhHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchhhHHHHHHHHHHHHhcCC
Q 024858 153 DPDA------N-K-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELLLELESKQP 211 (261)
Q Consensus 153 ~P~~------~-~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~a~~~l~~l~~~~~ 211 (261)
.-++ . . ++..+.|++..|+.-.|...+++..... |...+.....-+..++.++...++
T Consensus 185 ~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~-~~F~~s~E~~~~~~l~~A~~~~D~ 250 (282)
T PF14938_consen 185 CLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQD-PSFASSREYKFLEDLLEAYEEGDV 250 (282)
T ss_dssp CCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTS-TTSTTSHHHHHHHHHHHHHHTT-C
T ss_pred hhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCCCcHHHHHHHHHHHHHHhCCH
Confidence 4322 1 2 3567889999999999999999998862 233445566678888888875443
No 112
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.02 E-value=1.8e-09 Score=73.50 Aligned_cols=67 Identities=27% Similarity=0.182 Sum_probs=60.5
Q ss_pred hHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhc
Q 024858 26 VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCG-KVEEQIEMLKRKLRLIY 94 (261)
Q Consensus 26 ~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g-~~~eA~~~~~~al~l~~ 94 (261)
++.++..+|.++...|++++|+..|++++.++|++ ..+...+|.+|..+| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~--~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNN--AEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTH--HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 56789999999999999999999999999999995 346677999999999 79999999999999854
No 113
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.01 E-value=4.2e-08 Score=81.40 Aligned_cols=138 Identities=20% Similarity=0.182 Sum_probs=107.1
Q ss_pred ChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCch-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcc
Q 024858 25 RVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ-SQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKP 103 (261)
Q Consensus 25 ~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~-~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~ 103 (261)
..++.+...|..+.+.|++.+|+..+++++...|.. ........+|.+|.+.|++++|+..+++.++..|..
T Consensus 3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~------- 75 (203)
T PF13525_consen 3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNS------- 75 (203)
T ss_dssp --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT--------
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC-------
Confidence 356788899999999999999999999999999963 223455678999999999999999999999986621
Q ss_pred hHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHhhCCCchh-h------------
Q 024858 104 TKTARSHGKKFQVSVRQETSRLLGNLAWAYMQK-----------TNFMAAEVVYQKAQMIDPDANK-A------------ 159 (261)
Q Consensus 104 ~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~-----------g~~~eA~~~~~~al~~~P~~~~-~------------ 159 (261)
|..+.+++.+|.++..+ +...+|+..|+..+...|++.. .
T Consensus 76 ----------------~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~ 139 (203)
T PF13525_consen 76 ----------------PKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR 139 (203)
T ss_dssp ----------------TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH
T ss_pred ----------------cchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH
Confidence 22356778888886554 4456999999999999999752 1
Q ss_pred -----hhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 160 -----CNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 160 -----~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
+.+|..|.+.|.+..|+..++.++..
T Consensus 140 la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~ 170 (203)
T PF13525_consen 140 LAEHELYIARFYYKRGKYKAAIIRFQYVIEN 170 (203)
T ss_dssp HHHHHHHHHHHHHCTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 34799999999999999999999996
No 114
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.01 E-value=4.6e-08 Score=85.29 Aligned_cols=135 Identities=21% Similarity=0.215 Sum_probs=96.4
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHhcCC----chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchH
Q 024858 30 LKDMAVVMKQLDRSEEAIEAIKSFRGLCS----KQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTK 105 (261)
Q Consensus 30 l~~Lg~~~~~~g~~~eAi~~~~~~~~~~P----~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~ 105 (261)
+...|..+...|++++|..+|.++....- ...........+.+|.+. ++++|+.+|++++.+.-
T Consensus 38 y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~----------- 105 (282)
T PF14938_consen 38 YEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYR----------- 105 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHH-----------
Confidence 44458899999999999999998754321 111122334466776665 99999999999999731
Q ss_pred HHhhchhhhhhhcCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCC--Cch----h-hhhHHHHHHHcCCHHHHHH
Q 024858 106 TARSHGKKFQVSVRQETSRLLGNLAWAYMQK-TNFMAAEVVYQKAQMIDP--DAN----K-ACNLGLCLIKRTRYNEARS 177 (261)
Q Consensus 106 ~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~-g~~~eA~~~~~~al~~~P--~~~----~-~~~L~~~l~~~g~~~eA~~ 177 (261)
..+..- .-+.++.++|.+|... |++++|+.+|++|+.+.- +.. . ..++|.++...|+|++|+.
T Consensus 106 ---~~G~~~------~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~ 176 (282)
T PF14938_consen 106 ---EAGRFS------QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIE 176 (282)
T ss_dssp ---HCT-HH------HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred ---hcCcHH------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHH
Confidence 111110 0245889999999999 999999999999998732 221 2 4589999999999999999
Q ss_pred HHHHHHhC
Q 024858 178 VLEDVLYG 185 (261)
Q Consensus 178 ~~~~~l~~ 185 (261)
.|+++...
T Consensus 177 ~~e~~~~~ 184 (282)
T PF14938_consen 177 IYEEVAKK 184 (282)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 99999885
No 115
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.00 E-value=4.1e-09 Score=92.12 Aligned_cols=149 Identities=18% Similarity=0.156 Sum_probs=90.9
Q ss_pred hHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchh-------h
Q 024858 26 VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGE-------A 98 (261)
Q Consensus 26 ~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~-------~ 98 (261)
++-.....|.++...|++++|++.+.+. + ......+...+|.+.+|++.|...++++-+.+++.- |
T Consensus 101 ~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~--~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~aw 173 (290)
T PF04733_consen 101 NEIVQLLAATILFHEGDYEEALKLLHKG-----G--SLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAW 173 (290)
T ss_dssp HHHHHHHHHHHHCCCCHHHHHHCCCTTT-----T--CHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHcc-----C--cccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 3434444566666677777777766443 1 122334456677777777777777777655533210 1
Q ss_pred hc---Cc--chHHHhhchhhhh-h-hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcC
Q 024858 99 FN---GK--PTKTARSHGKKFQ-V-SVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRT 170 (261)
Q Consensus 99 ~~---~~--~~~~~~~~~~~~~-~-~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g 170 (261)
.+ |. ..... -.|. + .--|..+.+++.++.+++++|+|+||+..+.+++..+|++++ ..|++.+...+|
T Consensus 174 v~l~~g~e~~~~A~----y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~g 249 (290)
T PF04733_consen 174 VNLATGGEKYQDAF----YIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLG 249 (290)
T ss_dssp HHHHHTTTCCCHHH----HHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT
T ss_pred HHHHhCchhHHHHH----HHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhC
Confidence 11 10 00000 0011 1 111456778889999999999999999999999999999998 889999999999
Q ss_pred CH-HHHHHHHHHHHhC
Q 024858 171 RY-NEARSVLEDVLYG 185 (261)
Q Consensus 171 ~~-~eA~~~~~~~l~~ 185 (261)
+. +.+.++..++...
T Consensus 250 k~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 250 KPTEAAERYLSQLKQS 265 (290)
T ss_dssp -TCHHHHHHHHHCHHH
T ss_pred CChhHHHHHHHHHHHh
Confidence 88 4555666665554
No 116
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.00 E-value=1.9e-07 Score=87.53 Aligned_cols=183 Identities=17% Similarity=0.052 Sum_probs=134.5
Q ss_pred CchhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHc----
Q 024858 1 MVQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKC---- 76 (261)
Q Consensus 1 ~~~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~---- 76 (261)
|+....|++++|+..+......-.+....+...|.++.++|+++||...|+..+..+|++ ...+..|..+..-.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn--~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDN--YDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc--HHHHHHHHHHHhhhcccc
Confidence 355678999999999998888888888889999999999999999999999999999994 33444455444122
Q ss_pred -CCHHHHHHHHHHHHHhhcchhhh--------c------------------Ccc------hHHHhhchh------hhh--
Q 024858 77 -GKVEEQIEMLKRKLRLIYQGEAF--------N------------------GKP------TKTARSHGK------KFQ-- 115 (261)
Q Consensus 77 -g~~~eA~~~~~~al~l~~~~~~~--------~------------------~~~------~~~~~~~~~------~~~-- 115 (261)
...+.-.++|++.-...|...+. . |.+ ..+.....+ .+.
T Consensus 90 ~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~ 169 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEY 169 (517)
T ss_pred cccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHH
Confidence 35677788888876655422111 0 000 000000000 000
Q ss_pred ---h----h--------cCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHH
Q 024858 116 ---V----S--------VRQET--SRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARS 177 (261)
Q Consensus 116 ---~----~--------l~p~~--~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~ 177 (261)
+ . .+|.. .++++.|+..|...|++++|+.+..+|++..|+.++ ++..|.+|-..|++.+|..
T Consensus 170 ~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~ 249 (517)
T PF12569_consen 170 VNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAE 249 (517)
T ss_pred HHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 0 0 11111 246678999999999999999999999999999999 8889999999999999999
Q ss_pred HHHHHHhC
Q 024858 178 VLEDVLYG 185 (261)
Q Consensus 178 ~~~~~l~~ 185 (261)
+++.+...
T Consensus 250 ~~~~Ar~L 257 (517)
T PF12569_consen 250 AMDEAREL 257 (517)
T ss_pred HHHHHHhC
Confidence 99999997
No 117
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.00 E-value=1.5e-08 Score=88.13 Aligned_cols=178 Identities=18% Similarity=0.160 Sum_probs=120.5
Q ss_pred cCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHH
Q 024858 6 QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEM 85 (261)
Q Consensus 6 ~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~ 85 (261)
.||...|+.+....|+..|=+++....-+.+|...|....||.-++.+-++..+ ++....-.+.++...|+.++++..
T Consensus 168 ~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D--nTe~~ykis~L~Y~vgd~~~sL~~ 245 (504)
T KOG0624|consen 168 SGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD--NTEGHYKISQLLYTVGDAENSLKE 245 (504)
T ss_pred CCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc--chHHHHHHHHHHHhhhhHHHHHHH
Confidence 566777777777777777776666666677777777777777777776666555 233444456666777777777777
Q ss_pred HHHHHHhhcchh-hhc--CcchHH---Hhhchh------------hh--hhhcCCCcHHHH----HHHHHHHHHcCCHHH
Q 024858 86 LKRKLRLIYQGE-AFN--GKPTKT---ARSHGK------------KF--QVSVRQETSRLL----GNLAWAYMQKTNFMA 141 (261)
Q Consensus 86 ~~~al~l~~~~~-~~~--~~~~~~---~~~~~~------------~~--~~~l~p~~~~~~----~~Lg~~~~~~g~~~e 141 (261)
.+..|+++|... .|. -+..+. ..+-.. .. .+.-+|+.+.+. .-+-.|+..-|++.|
T Consensus 246 iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~e 325 (504)
T KOG0624|consen 246 IRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGE 325 (504)
T ss_pred HHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHH
Confidence 777777765321 111 000000 000000 00 023334433333 346788999999999
Q ss_pred HHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 142 AEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 142 A~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
|+....++|.++|++.. ++.-+.+|+-...|++|+.-|+++...
T Consensus 326 AiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 326 AIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 99999999999999999 999999999999999999999999997
No 118
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=99.00 E-value=1.6e-08 Score=91.57 Aligned_cols=118 Identities=22% Similarity=0.265 Sum_probs=104.6
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchh
Q 024858 33 MAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGK 112 (261)
Q Consensus 33 Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~ 112 (261)
|-..+...+++++|+..+++..+.+|+ ....++.+|...++-.+|++.+.++++..
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~pe-----v~~~LA~v~l~~~~E~~AI~ll~~aL~~~------------------- 230 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERDPE-----VAVLLARVYLLMNEEVEAIRLLNEALKEN------------------- 230 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcCCc-----HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-------------------
Confidence 555667779999999999999999988 23458899999999999999999999764
Q ss_pred hhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHH
Q 024858 113 KFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLED 181 (261)
Q Consensus 113 ~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~ 181 (261)
|.+..++..-+..+..+++++.|+...++++.+.|++.. |..|+.+|..+|++++|+..+.-
T Consensus 231 -------p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs 293 (395)
T PF09295_consen 231 -------PQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNS 293 (395)
T ss_pred -------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence 345678888999999999999999999999999999998 99999999999999999977663
No 119
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.99 E-value=5.5e-08 Score=90.67 Aligned_cols=152 Identities=19% Similarity=0.131 Sum_probs=87.6
Q ss_pred cCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHH
Q 024858 6 QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEM 85 (261)
Q Consensus 6 ~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~ 85 (261)
.||...|...+.+|+..+|+..+.|..--.+......+++|..++.++....|.. .+++--+.+..-+|..++|+.+
T Consensus 597 agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTe---Rv~mKs~~~er~ld~~eeA~rl 673 (913)
T KOG0495|consen 597 AGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTE---RVWMKSANLERYLDNVEEALRL 673 (913)
T ss_pred cCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcc---hhhHHHhHHHHHhhhHHHHHHH
Confidence 4566666666666666666666666555555555556666666665555555541 1222233444455566666666
Q ss_pred HHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHH
Q 024858 86 LKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGL 164 (261)
Q Consensus 86 ~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~ 164 (261)
++++|+.. |+++..|..+|.++.++++.+.|...|..-++.=|.+.. |..|+.
T Consensus 674 lEe~lk~f--------------------------p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLak 727 (913)
T KOG0495|consen 674 LEEALKSF--------------------------PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAK 727 (913)
T ss_pred HHHHHHhC--------------------------CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHH
Confidence 66665553 445556666666666666666666666666666666665 666666
Q ss_pred HHHHcCCHHHHHHHHHHHHhCC
Q 024858 165 CLIKRTRYNEARSVLEDVLYGR 186 (261)
Q Consensus 165 ~l~~~g~~~eA~~~~~~~l~~~ 186 (261)
+-.+.|..-.|..+++++.-.+
T Consensus 728 leEk~~~~~rAR~ildrarlkN 749 (913)
T KOG0495|consen 728 LEEKDGQLVRARSILDRARLKN 749 (913)
T ss_pred HHHHhcchhhHHHHHHHHHhcC
Confidence 6666666666666666555543
No 120
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.98 E-value=3.4e-08 Score=92.77 Aligned_cols=122 Identities=18% Similarity=0.122 Sum_probs=87.4
Q ss_pred CCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcH----HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHc------
Q 024858 7 KDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSE----EAIEAIKSFRGLCSKQSQESLDNVLIDLYKKC------ 76 (261)
Q Consensus 7 ~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~----eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~------ 76 (261)
++..+|+.+|++|++.+|+++.++..++.++.....+. ..+....+....... .........+|...
T Consensus 356 ~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a---l~~~~~~~~~~~ala~~~~~ 432 (517)
T PRK10153 356 KSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA---LPELNVLPRIYEILAVQALV 432 (517)
T ss_pred HHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh---cccCcCChHHHHHHHHHHHh
Confidence 45778999999999999999999999998886654332 112222222221111 00111123445444
Q ss_pred -CCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 024858 77 -GKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPD 155 (261)
Q Consensus 77 -g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~ 155 (261)
|++++|...+++++.++| +..++..+|.++..+|++++|+..|++|+.++|.
T Consensus 433 ~g~~~~A~~~l~rAl~L~p---------------------------s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 433 KGKTDEAYQAINKAIDLEM---------------------------SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred cCCHHHHHHHHHHHHHcCC---------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 678888888888888743 3568999999999999999999999999999999
Q ss_pred chh
Q 024858 156 ANK 158 (261)
Q Consensus 156 ~~~ 158 (261)
++.
T Consensus 486 ~pt 488 (517)
T PRK10153 486 ENT 488 (517)
T ss_pred Cch
Confidence 986
No 121
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.98 E-value=8.3e-09 Score=95.78 Aligned_cols=153 Identities=16% Similarity=0.134 Sum_probs=132.8
Q ss_pred hcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHH
Q 024858 5 VQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIE 84 (261)
Q Consensus 5 ~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~ 84 (261)
..|++.+.+...+++++..|.+++++...|..+..+|+-+||....+..++.+|... .=|+ ++|-++..-.+|++||.
T Consensus 19 E~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~-vCwH-v~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSH-VCWH-VLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccc-hhHH-HHHHHHhhhhhHHHHHH
Confidence 356788889999999999999999999999999999999999999999999998743 3234 48899999999999999
Q ss_pred HHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHH
Q 024858 85 MLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLG 163 (261)
Q Consensus 85 ~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~ 163 (261)
+|+.||++. |++..+|..|+....++|+++-....-.+.++..|.+.. |..++
T Consensus 97 cy~nAl~~~--------------------------~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~A 150 (700)
T KOG1156|consen 97 CYRNALKIE--------------------------KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFA 150 (700)
T ss_pred HHHHHHhcC--------------------------CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHH
Confidence 999999973 467788888888888899999888888888898888887 88888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhC
Q 024858 164 LCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 164 ~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
.++...|.+..|....+.....
T Consensus 151 vs~~L~g~y~~A~~il~ef~~t 172 (700)
T KOG1156|consen 151 VAQHLLGEYKMALEILEEFEKT 172 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 8888889888888887766553
No 122
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.98 E-value=1.9e-08 Score=95.07 Aligned_cols=130 Identities=18% Similarity=0.062 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHH
Q 024858 28 SALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTA 107 (261)
Q Consensus 28 ~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~ 107 (261)
..|...+......+..++|..++.++.+.+|-. ...++..|.++..+|+++||.+.|..++.++
T Consensus 651 ~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~--~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld-------------- 714 (799)
T KOG4162|consen 651 KLWLLAADLFLLSGNDDEARSCLLEASKIDPLS--ASVYYLRGLLLEVKGQLEEAKEAFLVALALD-------------- 714 (799)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHhcchhh--HHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC--------------
Confidence 345567888889999999999999999999984 3456678899999999999999999998874
Q ss_pred hhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHH--HHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHh
Q 024858 108 RSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEV--VYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLY 184 (261)
Q Consensus 108 ~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~--~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~ 184 (261)
|++..+...||.++.+.|+..-|.+ .++.++++||+|+. |+.||.++.++|+.++|...|..+++
T Consensus 715 ------------P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 715 ------------PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred ------------CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 5677899999999999999999999 99999999999999 99999999999999999999999999
Q ss_pred C
Q 024858 185 G 185 (261)
Q Consensus 185 ~ 185 (261)
.
T Consensus 783 L 783 (799)
T KOG4162|consen 783 L 783 (799)
T ss_pred h
Confidence 6
No 123
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.98 E-value=1.7e-07 Score=94.66 Aligned_cols=179 Identities=13% Similarity=0.076 Sum_probs=89.6
Q ss_pred hcCCHHHHHHHHHHHHHcCCC-hHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHH
Q 024858 5 VQKDPEAAIVLFWKAINAGDR-VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQI 83 (261)
Q Consensus 5 ~~~~~~~A~~~~~~al~~~p~-~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~ 83 (261)
..|+++.|..+|.+..+.+.. +..++..|-..|.+.|++++|.+.++++...+.. ++...++.++..|.+.|++++|+
T Consensus 449 k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~-PdvvTynaLI~gy~k~G~~eeAl 527 (1060)
T PLN03218 449 SSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVE-ANVHTFGALIDGCARAGQVAKAF 527 (1060)
T ss_pred hCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHCcCHHHHH
Confidence 456666677777666654322 2344556666666666666666666666554321 01223455666666666666666
Q ss_pred HHHHHHHHhh--cchhhhcCcchHHHhh--c---hhhhh-h-----hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 024858 84 EMLKRKLRLI--YQGEAFNGKPTKTARS--H---GKKFQ-V-----SVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQ 150 (261)
Q Consensus 84 ~~~~~al~l~--~~~~~~~~~~~~~~~~--~---~~~~~-~-----~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al 150 (261)
++|++..... |....++....-.++. . ...+. . -+.|+ ..+++.|-.+|.+.|++++|.+.|++..
T Consensus 528 ~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~ 606 (1060)
T PLN03218 528 GAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACANAGQVDRAKEVYQMIH 606 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 6666655432 2111221000000000 0 00000 0 12233 2455555566666666666666666666
Q ss_pred hhCC-Cchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 151 MIDP-DANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 151 ~~~P-~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
+.+. .+.. +..+...|.+.|++++|..+|++....
T Consensus 607 e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~ 643 (1060)
T PLN03218 607 EYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK 643 (1060)
T ss_pred HcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence 5542 2223 555566666666666666666655553
No 124
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.97 E-value=2.4e-08 Score=97.54 Aligned_cols=171 Identities=12% Similarity=0.039 Sum_probs=131.7
Q ss_pred hhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc--CCchhHHHHHHHHHHHHHHcCCHHH
Q 024858 4 LVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGL--CSKQSQESLDNVLIDLYKKCGKVEE 81 (261)
Q Consensus 4 ~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~--~P~~~~~~~~~~L~~ly~~~g~~~e 81 (261)
...|++++|...|.+..+ | +..+|+.|...|.+.|+.++|+++++++... .|+ . ..++.+...+.+.|+.++
T Consensus 371 ~k~G~~~~A~~vf~~m~~--~-d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd--~-~T~~~ll~a~~~~g~~~~ 444 (697)
T PLN03081 371 SKWGRMEDARNVFDRMPR--K-NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPN--H-VTFLAVLSACRYSGLSEQ 444 (697)
T ss_pred HHCCCHHHHHHHHHhCCC--C-CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC--H-HHHHHHHHHHhcCCcHHH
Confidence 357999999999997654 3 4557999999999999999999999998764 455 2 235567788899999999
Q ss_pred HHHHHHHHHHhh---cchhhhc---------CcchHHHhhchhhhh-hhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 024858 82 QIEMLKRKLRLI---YQGEAFN---------GKPTKTARSHGKKFQ-VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQK 148 (261)
Q Consensus 82 A~~~~~~al~l~---~~~~~~~---------~~~~~~~~~~~~~~~-~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~ 148 (261)
|.++|+...+.. |....|+ |...+. ...+. .-+.|+ ..+|..|..++...|+++.|...+++
T Consensus 445 a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA----~~~~~~~~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~ 519 (697)
T PLN03081 445 GWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEA----YAMIRRAPFKPT-VNMWAALLTACRIHKNLELGRLAAEK 519 (697)
T ss_pred HHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHH----HHHHHHCCCCCC-HHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 999999987632 2212222 111100 00111 122333 45799999999999999999999999
Q ss_pred HHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 149 AQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 149 al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
.+.++|++.. +..|+..|.+.|++++|.+++++....
T Consensus 520 l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 520 LYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred HhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 9999999987 888999999999999999999998875
No 125
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=1.2e-08 Score=90.58 Aligned_cols=130 Identities=17% Similarity=0.128 Sum_probs=108.9
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHhcCC-------c------hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcch
Q 024858 30 LKDMAVVMKQLDRSEEAIEAIKSFRGLCS-------K------QSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQG 96 (261)
Q Consensus 30 l~~Lg~~~~~~g~~~eAi~~~~~~~~~~P-------~------~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~ 96 (261)
...-|..+.+.|+|..|+..|++++..-+ . ......+++|+.+|.++++|.+|+....++|++.
T Consensus 211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~--- 287 (397)
T KOG0543|consen 211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD--- 287 (397)
T ss_pred HHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC---
Confidence 45579999999999999999999876433 1 1122345779999999999999999999999874
Q ss_pred hhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHH
Q 024858 97 EAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEA 175 (261)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA 175 (261)
|++..+++.-|.+|..+|+|+.|+..|++|++++|+|.. ...|..+-.+..++.+.
T Consensus 288 -----------------------~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~k 344 (397)
T KOG0543|consen 288 -----------------------PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEK 344 (397)
T ss_pred -----------------------CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 467789999999999999999999999999999999988 77888888877777666
Q ss_pred -HHHHHHHHhC
Q 024858 176 -RSVLEDVLYG 185 (261)
Q Consensus 176 -~~~~~~~l~~ 185 (261)
.+.|.+++..
T Consensus 345 ekk~y~~mF~k 355 (397)
T KOG0543|consen 345 EKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHhhc
Confidence 6788888875
No 126
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.97 E-value=6.6e-08 Score=77.65 Aligned_cols=151 Identities=15% Similarity=0.076 Sum_probs=115.7
Q ss_pred CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHh-cCCchhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024858 8 DPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRG-LCSKQSQESLDNVLIDLYKKCGKVEEQIEML 86 (261)
Q Consensus 8 ~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~-~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~ 86 (261)
|++.+..-..+.+...|.+.. ...||..+...||+.||...|++++. +.-+++.. ...++......+++.+|...+
T Consensus 71 dP~R~~Rea~~~~~~ApTvqn-r~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~--lLglA~Aqfa~~~~A~a~~tL 147 (251)
T COG4700 71 DPERHLREATEELAIAPTVQN-RYRLANALAELGRYHEAVPHYQQALSGIFAHDAAM--LLGLAQAQFAIQEFAAAQQTL 147 (251)
T ss_pred ChhHHHHHHHHHHhhchhHHH-HHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHH--HHHHHHHHHhhccHHHHHHHH
Confidence 444444444445555555443 56799999999999999999999876 44454333 334778888999999999999
Q ss_pred HHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchhhhhHHHHH
Q 024858 87 KRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKACNLGLCL 166 (261)
Q Consensus 87 ~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~L~~~l 166 (261)
++..+..|.+. .|+.+..+|.+|..+|++..|+..|+.++...|+....+..+..+
T Consensus 148 e~l~e~~pa~r------------------------~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~L 203 (251)
T COG4700 148 EDLMEYNPAFR------------------------SPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEML 203 (251)
T ss_pred HHHhhcCCccC------------------------CCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 99888643111 345677889999999999999999999999999987777779999
Q ss_pred HHcCCHHHHHHHHHHHHhC
Q 024858 167 IKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 167 ~~~g~~~eA~~~~~~~l~~ 185 (261)
.++||.++|...|..+...
T Consensus 204 a~qgr~~ea~aq~~~v~d~ 222 (251)
T COG4700 204 AKQGRLREANAQYVAVVDT 222 (251)
T ss_pred HHhcchhHHHHHHHHHHHH
Confidence 9999999998888776653
No 127
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.95 E-value=3.8e-08 Score=96.08 Aligned_cols=173 Identities=13% Similarity=0.055 Sum_probs=110.2
Q ss_pred hhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc--CCchhHHHHHHHHHHHHHHcCCHHH
Q 024858 4 LVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGL--CSKQSQESLDNVLIDLYKKCGKVEE 81 (261)
Q Consensus 4 ~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~--~P~~~~~~~~~~L~~ly~~~g~~~e 81 (261)
...|++++|...|... .+.+..+|..|...|.+.|+.++|+.+|+++... .|+ .. ..+.+...|.+.|++++
T Consensus 270 ~k~g~~~~A~~vf~~m---~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd--~~-t~~~ll~a~~~~g~~~~ 343 (697)
T PLN03081 270 SKCGDIEDARCVFDGM---PEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID--QF-TFSIMIRIFSRLALLEH 343 (697)
T ss_pred HHCCCHHHHHHHHHhC---CCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC--HH-HHHHHHHHHHhccchHH
Confidence 3567888888888754 3445667888888888888888888888887653 455 22 34556777788888888
Q ss_pred HHHHHHHHHHhhcchh--hhcCcchHHHhhch------hhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--
Q 024858 82 QIEMLKRKLRLIYQGE--AFNGKPTKTARSHG------KKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQM-- 151 (261)
Q Consensus 82 A~~~~~~al~l~~~~~--~~~~~~~~~~~~~~------~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~-- 151 (261)
|.+++..+++...+.+ .++... ...-..+ ..|....+| +..+|+.|...|.+.|+.++|+..|++.+.
T Consensus 344 a~~i~~~m~~~g~~~d~~~~~~Li-~~y~k~G~~~~A~~vf~~m~~~-d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g 421 (697)
T PLN03081 344 AKQAHAGLIRTGFPLDIVANTALV-DLYSKWGRMEDARNVFDRMPRK-NLISWNALIAGYGNHGRGTKAVEMFERMIAEG 421 (697)
T ss_pred HHHHHHHHHHhCCCCCeeehHHHH-HHHHHCCCHHHHHHHHHhCCCC-CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 8888888777532111 111000 0000000 112212223 345677788888888888888888887765
Q ss_pred hCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHh
Q 024858 152 IDPDANKACNLGLCLIKRTRYNEARSVLEDVLY 184 (261)
Q Consensus 152 ~~P~~~~~~~L~~~l~~~g~~~eA~~~~~~~l~ 184 (261)
+.||...+..+..++.+.|+.++|..+|+....
T Consensus 422 ~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~ 454 (697)
T PLN03081 422 VAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSE 454 (697)
T ss_pred CCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 446655566677777777777777777777765
No 128
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.94 E-value=7.6e-08 Score=79.88 Aligned_cols=165 Identities=22% Similarity=0.165 Sum_probs=115.7
Q ss_pred hhhcCCHHHHHHHHHHHHHcCC---ChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhH-HHHHHHHHHHHHH---
Q 024858 3 QLVQKDPEAAIVLFWKAINAGD---RVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQ-ESLDNVLIDLYKK--- 75 (261)
Q Consensus 3 ~~~~~~~~~A~~~~~~al~~~p---~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~-~~~~~~L~~ly~~--- 75 (261)
.+..|++.+|+..|.+++...| -.+.+...+|.++...|++++|+..++++++..|+++. ..+...+|..+.+
T Consensus 15 ~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~ 94 (203)
T PF13525_consen 15 ALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIP 94 (203)
T ss_dssp HHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCc
Confidence 4678999999999999998655 46888999999999999999999999999999998421 2334456655443
Q ss_pred --------cCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 024858 76 --------CGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQ 147 (261)
Q Consensus 76 --------~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~ 147 (261)
++...+|+..++..++..|... +.. .+...- ..+....+.--..+|..|.+.|.|..|+..|+
T Consensus 95 ~~~~~~~D~~~~~~A~~~~~~li~~yP~S~-y~~----~A~~~l----~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~ 165 (203)
T PF13525_consen 95 GILRSDRDQTSTRKAIEEFEELIKRYPNSE-YAE----EAKKRL----AELRNRLAEHELYIARFYYKRGKYKAAIIRFQ 165 (203)
T ss_dssp HHH-TT---HHHHHHHHHHHHHHHH-TTST-THH----HHHHHH----HHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHH
T ss_pred cchhcccChHHHHHHHHHHHHHHHHCcCch-HHH----HHHHHH----HHHHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 3445689999999998765322 110 000000 00011122344678999999999999999999
Q ss_pred HHHhhCCCchh----hhhHHHHHHHcCCHHHHH
Q 024858 148 KAQMIDPDANK----ACNLGLCLIKRTRYNEAR 176 (261)
Q Consensus 148 ~al~~~P~~~~----~~~L~~~l~~~g~~~eA~ 176 (261)
.+++..|+... ..-|+.+|.++|..+.|.
T Consensus 166 ~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 166 YVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 99999999873 567899999999998554
No 129
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.94 E-value=6.7e-08 Score=89.89 Aligned_cols=225 Identities=16% Similarity=0.078 Sum_probs=148.0
Q ss_pred cCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHH
Q 024858 6 QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEM 85 (261)
Q Consensus 6 ~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~ 85 (261)
-|+.++|..+.+.++..|+...-.|+.+|.++...++|+|||+.|+.+++..|+ +..+..-|+.+-.+.|+++-....
T Consensus 54 lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~d--N~qilrDlslLQ~QmRd~~~~~~t 131 (700)
T KOG1156|consen 54 LGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKD--NLQILRDLSLLQIQMRDYEGYLET 131 (700)
T ss_pred ccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHHHHhhhhHHHH
Confidence 478899999999999999999999999999999999999999999999999999 455666788888999999999999
Q ss_pred HHHHHHhhcchhhhc----------CcchHHHhhchhhhhhhc--CCCc-----HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 024858 86 LKRKLRLIYQGEAFN----------GKPTKTARSHGKKFQVSV--RQET-----SRLLGNLAWAYMQKTNFMAAEVVYQK 148 (261)
Q Consensus 86 ~~~al~l~~~~~~~~----------~~~~~~~~~~~~~~~~~l--~p~~-----~~~~~~Lg~~~~~~g~~~eA~~~~~~ 148 (261)
-.+.|.++|...++. |.... +-..-..+.-.. .|+. ......-..+....|.+++|.+.+..
T Consensus 132 r~~LLql~~~~ra~w~~~Avs~~L~g~y~~-A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~ 210 (700)
T KOG1156|consen 132 RNQLLQLRPSQRASWIGFAVAQHLLGEYKM-ALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLD 210 (700)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHh
Confidence 999999876433221 10000 000000111011 1222 22334456666777887777666554
Q ss_pred HHhhCCCchh----hhhHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchhhHHHHH-----------HHHHHHHhcCCCC
Q 024858 149 AQMIDPDANK----ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAE-----------ELLLELESKQPPP 213 (261)
Q Consensus 149 al~~~P~~~~----~~~L~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~a~-----------~~l~~l~~~~~~~ 213 (261)
..|.-.+ ...-|..+.++|++++|..+|...+..+|........+..+. .++..+....|-.
T Consensus 211 ---~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~ 287 (700)
T KOG1156|consen 211 ---NEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRH 287 (700)
T ss_pred ---hhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCccc
Confidence 3444333 235689999999999999999999998432222111112222 2222233333434
Q ss_pred chhhhcccch--hHHHHHHHHHHHH
Q 024858 214 DLSDLLGLNL--EDEFVNGLEEMVR 236 (261)
Q Consensus 214 ~~~~~~~~~~--~d~~~~~~~~~l~ 236 (261)
..+..++.++ +++|-+..+.++.
T Consensus 288 e~p~Rlplsvl~~eel~~~vdkyL~ 312 (700)
T KOG1156|consen 288 ECPRRLPLSVLNGEELKEIVDKYLR 312 (700)
T ss_pred ccchhccHHHhCcchhHHHHHHHHH
Confidence 4444444444 5777777777765
No 130
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.94 E-value=3.9e-08 Score=74.54 Aligned_cols=101 Identities=21% Similarity=0.125 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchh-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHH
Q 024858 28 SALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQS-QESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKT 106 (261)
Q Consensus 28 ~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~-~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~ 106 (261)
.+++.+|.++...|+.++|+..|++++..+++.. .......+|..|...|++++|+..+++++...|.+.
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~--------- 72 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDE--------- 72 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcc---------
Confidence 4688899999999999999999999999766521 233455689999999999999999999887644111
Q ss_pred HhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 024858 107 ARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQM 151 (261)
Q Consensus 107 ~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~ 151 (261)
-+..+...++.++...|+++||+..+-.++.
T Consensus 73 --------------~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 73 --------------LNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred --------------ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1345667789999999999999999988875
No 131
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.93 E-value=1.8e-08 Score=95.17 Aligned_cols=128 Identities=16% Similarity=0.083 Sum_probs=114.6
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHH
Q 024858 3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ 82 (261)
Q Consensus 3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA 82 (261)
.+..+..++|..++..+-+..|-.+..++..|.++..+|...||.+.|..++.++|++. .....+|.+|.+.|+..-|
T Consensus 660 ~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv--~s~~Ala~~lle~G~~~la 737 (799)
T KOG4162|consen 660 FLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHV--PSMTALAELLLELGSPRLA 737 (799)
T ss_pred HHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCc--HHHHHHHHHHHHhCCcchH
Confidence 34567788888899999999999999999999999999999999999999999999953 3455689999999998888
Q ss_pred HH--HHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh
Q 024858 83 IE--MLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK 158 (261)
Q Consensus 83 ~~--~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~ 158 (261)
.. .++.+++++ |.++++|++||.++..+|+.++|..+|.-|+++++.+|-
T Consensus 738 ~~~~~L~dalr~d--------------------------p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 738 EKRSLLSDALRLD--------------------------PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHHHHHhhC--------------------------CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 88 888888864 568899999999999999999999999999999999985
No 132
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.93 E-value=3.7e-08 Score=84.85 Aligned_cols=109 Identities=15% Similarity=0.163 Sum_probs=93.9
Q ss_pred HHHHHHHHHHH-HHcCCcHHHHHHHHHHHhcCCchhH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcch
Q 024858 27 DSALKDMAVVM-KQLDRSEEAIEAIKSFRGLCSKQSQ-ESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPT 104 (261)
Q Consensus 27 ~~al~~Lg~~~-~~~g~~~eAi~~~~~~~~~~P~~~~-~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~ 104 (261)
....+..+..+ ...|++++|+..|+.+++.+|++.. ......+|.+|...|++++|+..|+++++..|.
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~--------- 212 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPK--------- 212 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---------
Confidence 45677777766 5679999999999999999998521 245677999999999999999999999987541
Q ss_pred HHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh
Q 024858 105 KTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK 158 (261)
Q Consensus 105 ~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~ 158 (261)
.|..++++..+|.++..+|++++|...|+++++..|++..
T Consensus 213 --------------s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 213 --------------SPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred --------------CcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 2577899999999999999999999999999999999874
No 133
>PRK11906 transcriptional regulator; Provisional
Probab=98.92 E-value=5.8e-08 Score=88.10 Aligned_cols=149 Identities=9% Similarity=0.032 Sum_probs=119.6
Q ss_pred CHHHHHHHHHHHH---HcCCChHHHHHHHHHHHHHc---------CCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Q 024858 8 DPEAAIVLFWKAI---NAGDRVDSALKDMAVVMKQL---------DRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKK 75 (261)
Q Consensus 8 ~~~~A~~~~~~al---~~~p~~~~al~~Lg~~~~~~---------g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~ 75 (261)
+.+.|..+|.+++ .++|..+.++..++.++.+. ....+|..+.++++.++|.|+.. ...+|.++.-
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a--~~~~g~~~~~ 350 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKI--LAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHH--HHHHHHHHHh
Confidence 4567899999999 89999999999999888654 23456677888999999997543 4457777778
Q ss_pred cCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 024858 76 CGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPD 155 (261)
Q Consensus 76 ~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~ 155 (261)
.|+++.|+..+++++.++ |+.+.+++..|++..-.|+.++|....+++++++|.
T Consensus 351 ~~~~~~a~~~f~rA~~L~--------------------------Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~ 404 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHS--------------------------TDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPR 404 (458)
T ss_pred hcchhhHHHHHHHHhhcC--------------------------CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCch
Confidence 899999999999998874 578899999999999999999999999999999998
Q ss_pred chh--hhhHHHHHHHcCCHHHHHHHHHHHHh
Q 024858 156 ANK--ACNLGLCLIKRTRYNEARSVLEDVLY 184 (261)
Q Consensus 156 ~~~--~~~L~~~l~~~g~~~eA~~~~~~~l~ 184 (261)
-.. ...+-.-..-....++|+..|-+-.+
T Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (458)
T PRK11906 405 RRKAVVIKECVDMYVPNPLKNNIKLYYKETE 435 (458)
T ss_pred hhHHHHHHHHHHHHcCCchhhhHHHHhhccc
Confidence 765 44554423345678888888866433
No 134
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.92 E-value=5.2e-09 Score=94.67 Aligned_cols=69 Identities=19% Similarity=0.215 Sum_probs=65.8
Q ss_pred hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch---h-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 117 SVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN---K-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 117 ~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~---~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
+.+|+++.+++|+|.+|..+|+|++|+..|++|++++|++. . |+|+|.+|..+|++++|+..+++++..
T Consensus 69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 56799999999999999999999999999999999999997 3 899999999999999999999999996
No 135
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.91 E-value=2.1e-08 Score=94.29 Aligned_cols=167 Identities=16% Similarity=0.084 Sum_probs=114.0
Q ss_pred CCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024858 7 KDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEML 86 (261)
Q Consensus 7 ~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~ 86 (261)
|=...|...|++ .+.|.....+|...|+..+|..+.++-++..|+ ..++..||++....--|++|.++.
T Consensus 412 GitksAl~I~Er--------lemw~~vi~CY~~lg~~~kaeei~~q~lek~~d---~~lyc~LGDv~~d~s~yEkawEls 480 (777)
T KOG1128|consen 412 GITKSALVIFER--------LEMWDPVILCYLLLGQHGKAEEINRQELEKDPD---PRLYCLLGDVLHDPSLYEKAWELS 480 (777)
T ss_pred chHHHHHHHHHh--------HHHHHHHHHHHHHhcccchHHHHHHHHhcCCCc---chhHHHhhhhccChHHHHHHHHHh
Confidence 344555555553 345777788888888888888888888875444 236666777766666666666666
Q ss_pred HHHHHhh--cchhhhcCcchHHHhhchhhhh--hhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhh
Q 024858 87 KRKLRLI--YQGEAFNGKPTKTARSHGKKFQ--VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACN 161 (261)
Q Consensus 87 ~~al~l~--~~~~~~~~~~~~~~~~~~~~~~--~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~ 161 (261)
+..-... .-+..... ........+.+. ++++|-...+|+++|.+..+.+++..|..+|.+.+.++|++.. |.|
T Consensus 481 n~~sarA~r~~~~~~~~--~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnN 558 (777)
T KOG1128|consen 481 NYISARAQRSLALLILS--NKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNN 558 (777)
T ss_pred hhhhHHHHHhhcccccc--chhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhh
Confidence 5543321 00000000 000111112222 5677777888999999999999999999999999999999988 899
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCC
Q 024858 162 LGLCLIKRTRYNEARSVLEDVLYGR 186 (261)
Q Consensus 162 L~~~l~~~g~~~eA~~~~~~~l~~~ 186 (261)
|+.+|++.|+..+|...+++++..+
T Consensus 559 ls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 559 LSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred hhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 9999999999999999999888875
No 136
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.91 E-value=1.6e-07 Score=83.13 Aligned_cols=182 Identities=16% Similarity=0.131 Sum_probs=137.4
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHh---------------------------
Q 024858 3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRG--------------------------- 55 (261)
Q Consensus 3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~--------------------------- 55 (261)
++..||+..|..-..+++...|.++..+...-.+|...|++.+...++.+..+
T Consensus 163 ll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~ 242 (400)
T COG3071 163 LLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDD 242 (400)
T ss_pred HHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhcc
Confidence 56788999999999999999999999999999999999999888765433321
Q ss_pred -----------cCCch--hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhh--cC--cchHHHhhchhhhh--h
Q 024858 56 -----------LCSKQ--SQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAF--NG--KPTKTARSHGKKFQ--V 116 (261)
Q Consensus 56 -----------~~P~~--~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~--~~--~~~~~~~~~~~~~~--~ 116 (261)
--|.. .+..+...++.=+..+|++++|.+..+++++...++... .+ .+.+ .....+... +
T Consensus 243 ~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d-~~~l~k~~e~~l 321 (400)
T COG3071 243 NGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGD-PEPLIKAAEKWL 321 (400)
T ss_pred ccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCC-chHHHHHHHHHH
Confidence 11210 011222345556688999999999999999975433211 00 0000 000011111 4
Q ss_pred hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 117 SVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 117 ~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
.--|++|.++..||..|...+.|.+|..+++.|++..|+..++..+|.++.++|+..+|.+++++++..
T Consensus 322 ~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 322 KQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 566899999999999999999999999999999999999999999999999999999999999999875
No 137
>PLN03077 Protein ECB2; Provisional
Probab=98.91 E-value=6e-08 Score=96.80 Aligned_cols=170 Identities=12% Similarity=0.068 Sum_probs=130.8
Q ss_pred hhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc--CCchhHHHHHHHHHHHHHHcCCHHH
Q 024858 4 LVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGL--CSKQSQESLDNVLIDLYKKCGKVEE 81 (261)
Q Consensus 4 ~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~--~P~~~~~~~~~~L~~ly~~~g~~~e 81 (261)
...|+.++|...|... +.+..+|..|...|.+.|+.++|+++++++... .|+. . .++.+...|.+.|++++
T Consensus 535 ~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~--~-T~~~ll~a~~~~g~v~e 607 (857)
T PLN03077 535 VRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDE--V-TFISLLCACSRSGMVTQ 607 (857)
T ss_pred HHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCc--c-cHHHHHHHHhhcChHHH
Confidence 3478999999999875 455678999999999999999999999998774 4662 2 34456678899999999
Q ss_pred HHHHHHHHHHhh--cch-hhhc---------CcchHHHhhchhhhh-hhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 024858 82 QIEMLKRKLRLI--YQG-EAFN---------GKPTKTARSHGKKFQ-VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQK 148 (261)
Q Consensus 82 A~~~~~~al~l~--~~~-~~~~---------~~~~~~~~~~~~~~~-~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~ 148 (261)
|..+|+...+.. .|+ ..|+ |...+. ...+. ..++|+ +.+|..|-.++...|+.+.++...++
T Consensus 608 a~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA----~~~~~~m~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~ 682 (857)
T PLN03077 608 GLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEA----YNFINKMPITPD-PAVWGALLNACRIHRHVELGELAAQH 682 (857)
T ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHH----HHHHHHCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 999999987432 122 2222 111110 01111 235565 56788888889999999999999999
Q ss_pred HHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 149 AQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 149 al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
+++++|++.. +..|+++|...|++++|.++.+.....
T Consensus 683 l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~ 720 (857)
T PLN03077 683 IFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMREN 720 (857)
T ss_pred HHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHc
Confidence 9999999998 889999999999999999999988775
No 138
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.90 E-value=1.1e-08 Score=96.09 Aligned_cols=173 Identities=17% Similarity=0.114 Sum_probs=121.1
Q ss_pred hcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHH
Q 024858 5 VQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIE 84 (261)
Q Consensus 5 ~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~ 84 (261)
.-|+-.+|....++-++ .|+.+..+..+|-+..+..-++.|.++.+..-.. +...+|......++|.++..
T Consensus 436 ~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~ 506 (777)
T KOG1128|consen 436 LLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADK 506 (777)
T ss_pred HhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHH
Confidence 45677788888888877 6666667777777776666666665554332211 11223333345677777777
Q ss_pred HHHHHHHhhcc--hhhhc-Ccch-HHHhhch--hhhh--hhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 024858 85 MLKRKLRLIYQ--GEAFN-GKPT-KTARSHG--KKFQ--VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDA 156 (261)
Q Consensus 85 ~~~~al~l~~~--~~~~~-~~~~-~~~~~~~--~~~~--~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~ 156 (261)
.++..++++|- +.+|. |... +...... +.|+ +.++|++..+|+||+.+|...|+..+|...+++|++.+-++
T Consensus 507 hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~ 586 (777)
T KOG1128|consen 507 HLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQH 586 (777)
T ss_pred HHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCC
Confidence 77777777542 23333 2110 0000111 1122 67789999999999999999999999999999999999777
Q ss_pred hh-hhhHHHHHHHcCCHHHHHHHHHHHHhCC
Q 024858 157 NK-ACNLGLCLIKRTRYNEARSVLEDVLYGR 186 (261)
Q Consensus 157 ~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~ 186 (261)
.. |.|.-.+..+.|.+++|++.|.+.+..+
T Consensus 587 w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 587 WQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred CeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 78 9999999999999999999999998863
No 139
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.90 E-value=9.6e-08 Score=89.09 Aligned_cols=180 Identities=16% Similarity=0.119 Sum_probs=146.5
Q ss_pred hhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHH
Q 024858 4 LVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQI 83 (261)
Q Consensus 4 ~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~ 83 (261)
...++.++|..+++.+++.-|.....|..+|.++.++++.+.|.++|..-++.+|.. ..++..|+.+=.+.|..-.|-
T Consensus 662 r~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~--ipLWllLakleEk~~~~~rAR 739 (913)
T KOG0495|consen 662 RYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNS--IPLWLLLAKLEEKDGQLVRAR 739 (913)
T ss_pred HHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCC--chHHHHHHHHHHHhcchhhHH
Confidence 346788999999999999999999999999999999999999999999999999984 456777899888999999999
Q ss_pred HHHHHHHHhhcchhhh----------cCcc-------hHHHhhchh------------------h-hh--hhcCCCcHHH
Q 024858 84 EMLKRKLRLIYQGEAF----------NGKP-------TKTARSHGK------------------K-FQ--VSVRQETSRL 125 (261)
Q Consensus 84 ~~~~~al~l~~~~~~~----------~~~~-------~~~~~~~~~------------------~-~~--~~l~p~~~~~ 125 (261)
..+.++.-.+|.+..+ .|.. .+....++. + +. +.--.+++.+
T Consensus 740 ~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphV 819 (913)
T KOG0495|consen 740 SILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHV 819 (913)
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchh
Confidence 9999988877654322 0111 111111110 0 00 1112357788
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 126 LGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 126 ~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
+..+|..+....+++.|.+.|.+|++.+||+.+ |..+-.++...|.-++-.++|.+....
T Consensus 820 llaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~ 880 (913)
T KOG0495|consen 820 LLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA 880 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999 999999999999999999999999987
No 140
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.89 E-value=4.6e-07 Score=77.31 Aligned_cols=137 Identities=17% Similarity=0.076 Sum_probs=112.8
Q ss_pred hHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcch
Q 024858 26 VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQ-ESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPT 104 (261)
Q Consensus 26 ~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~-~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~ 104 (261)
.+..++..|..+.+.|++++|++.|++++...|.... ......+|.+|.+.|++++|+..+++.++..|.
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~--------- 101 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT--------- 101 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcC---------
Confidence 5667888999999999999999999999999997422 223456899999999999999999999998662
Q ss_pred HHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcC------------------CHHHHHHHHHHHHhhCCCchh--------
Q 024858 105 KTARSHGKKFQVSVRQETSRLLGNLAWAYMQKT------------------NFMAAEVVYQKAQMIDPDANK-------- 158 (261)
Q Consensus 105 ~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g------------------~~~eA~~~~~~al~~~P~~~~-------- 158 (261)
.|+.+.+++.+|.++...+ ...+|+..|++.+...|++.-
T Consensus 102 --------------~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl 167 (243)
T PRK10866 102 --------------HPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRL 167 (243)
T ss_pred --------------CCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHH
Confidence 1345678889998865554 136799999999999998742
Q ss_pred ----------hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 159 ----------ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 159 ----------~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
-+..|..|.+.|+|..|+.-++.++..
T Consensus 168 ~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~ 204 (243)
T PRK10866 168 VFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRD 204 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHH
Confidence 134788999999999999999999996
No 141
>PRK15331 chaperone protein SicA; Provisional
Probab=98.88 E-value=4e-08 Score=77.71 Aligned_cols=129 Identities=10% Similarity=0.060 Sum_probs=101.8
Q ss_pred CHHHHHHHHHHHHHc----------CCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcC
Q 024858 8 DPEAAIVLFWKAINA----------GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCG 77 (261)
Q Consensus 8 ~~~~A~~~~~~al~~----------~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g 77 (261)
+.++-...+..++.. .++.-+.+...|.-+.++|++++|..+|+-+...+|.++ .....||.++..+|
T Consensus 8 ~~~~~~~~i~~al~~G~tlk~l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~--~Y~~GLaa~~Q~~k 85 (165)
T PRK15331 8 SEERVAEMIWDAVSEGATLKDVHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNP--DYTMGLAAVCQLKK 85 (165)
T ss_pred hHHHHHHHHHHHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcH--HHHHHHHHHHHHHH
Confidence 444445555666653 344556677889999999999999999999999999854 34566999999999
Q ss_pred CHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch
Q 024858 78 KVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN 157 (261)
Q Consensus 78 ~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~ 157 (261)
+|++|+..|--+..+. +++|...+..|.||..+|+.++|..+|..++. .|.+.
T Consensus 86 ~y~~Ai~~Y~~A~~l~--------------------------~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~ 138 (165)
T PRK15331 86 QFQKACDLYAVAFTLL--------------------------KNDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDE 138 (165)
T ss_pred HHHHHHHHHHHHHHcc--------------------------cCCCCccchHHHHHHHhCCHHHHHHHHHHHHh-CcchH
Confidence 9999999999988763 35667789999999999999999999999999 56655
Q ss_pred hhhhHHHH
Q 024858 158 KACNLGLC 165 (261)
Q Consensus 158 ~~~~L~~~ 165 (261)
.....+..
T Consensus 139 ~l~~~A~~ 146 (165)
T PRK15331 139 SLRAKALV 146 (165)
T ss_pred HHHHHHHH
Confidence 43333333
No 142
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.87 E-value=4.4e-08 Score=83.94 Aligned_cols=177 Identities=15% Similarity=0.091 Sum_probs=135.9
Q ss_pred hhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHH
Q 024858 4 LVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQI 83 (261)
Q Consensus 4 ~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~ 83 (261)
+.+.++..|++++.--.+.+|.+-..+..||.+|....++.+|.+.|++.-.+.|..+.- ...-+..+.+.+.+.+|+
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qY--rlY~AQSLY~A~i~ADAL 98 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQY--RLYQAQSLYKACIYADAL 98 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHH--HHHHHHHHHHhcccHHHH
Confidence 455678888888888888999888899999999999999999999999999999984333 333566667889999998
Q ss_pred HHHHHHHHhhcchhhhcC--cchHHHh-hch----hhhhhhcCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 024858 84 EMLKRKLRLIYQGEAFNG--KPTKTAR-SHG----KKFQVSVRQ--ETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDP 154 (261)
Q Consensus 84 ~~~~~al~l~~~~~~~~~--~~~~~~~-~~~----~~~~~~l~p--~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P 154 (261)
.+....... + +..+. ....... +.+ ....+.-.| +.+++..|.|.+..+.|++++|.+-|+.|++...
T Consensus 99 rV~~~~~D~-~--~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsG 175 (459)
T KOG4340|consen 99 RVAFLLLDN-P--ALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSG 175 (459)
T ss_pred HHHHHhcCC-H--HHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcC
Confidence 877665442 1 00000 0000000 000 111133345 5788999999999999999999999999999999
Q ss_pred Cchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 155 DANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 155 ~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
-++- .+|++.+....|+++.|+.+..+++..
T Consensus 176 yqpllAYniALaHy~~~qyasALk~iSEIieR 207 (459)
T KOG4340|consen 176 YQPLLAYNLALAHYSSRQYASALKHISEIIER 207 (459)
T ss_pred CCchhHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 8888 999999999999999999999999886
No 143
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.85 E-value=6.5e-07 Score=75.13 Aligned_cols=129 Identities=9% Similarity=-0.004 Sum_probs=89.4
Q ss_pred hcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHH----Hhhchh---hhh--hhcCCCcHHH
Q 024858 55 GLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKT----ARSHGK---KFQ--VSVRQETSRL 125 (261)
Q Consensus 55 ~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~----~~~~~~---~~~--~~l~p~~~~~ 125 (261)
.+.|+.+ . +.-...-.....|+.+-|-.++++.-...| +...+++.... .....+ .+. +.=+|.+.-+
T Consensus 46 ~~g~e~w-~-l~EqV~IAAld~~~~~lAq~C~~~L~~~fp-~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~ 122 (289)
T KOG3060|consen 46 ALGDEIW-T-LYEQVFIAALDTGRDDLAQKCINQLRDRFP-GSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVI 122 (289)
T ss_pred ccCchHH-H-HHHHHHHHHHHhcchHHHHHHHHHHHHhCC-CChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHH
Confidence 4566532 2 222233344678999999999999776653 32222111000 000001 111 3445777777
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhCC
Q 024858 126 LGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGR 186 (261)
Q Consensus 126 ~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~ 186 (261)
+..--.+...+|+..+|++....-++..|.+.+ |..|+..|...|+|++|.-+|++++-.+
T Consensus 123 ~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~ 184 (289)
T KOG3060|consen 123 RKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ 184 (289)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC
Confidence 777777888899999999999999999999999 9999999999999999999999999983
No 144
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=7.8e-08 Score=85.43 Aligned_cols=182 Identities=21% Similarity=0.116 Sum_probs=131.0
Q ss_pred hhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchh----------------------
Q 024858 4 LVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQS---------------------- 61 (261)
Q Consensus 4 ~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~---------------------- 61 (261)
..++++.+|+..|..||...|+++..|.+-+.++...|++++|.--.++.+++.|+..
T Consensus 60 yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~ 139 (486)
T KOG0550|consen 60 YKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEK 139 (486)
T ss_pred HHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHHHH
Confidence 3467889999999999999999999999999999999999988876666655554310
Q ss_pred ----------------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcch-hhh--cCcchHHHhhc
Q 024858 62 ----------------------------QESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQG-EAF--NGKPTKTARSH 110 (261)
Q Consensus 62 ----------------------------~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~-~~~--~~~~~~~~~~~ 110 (261)
-..+-.+-+.++...|++++|+..=-..+++++.+ .+. +|........+
T Consensus 140 ~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~ 219 (486)
T KOG0550|consen 140 LKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNA 219 (486)
T ss_pred hhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccch
Confidence 01111233567888999999998888888876432 111 12110000000
Q ss_pred ---hhhhh--hhcCCCc------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-----hhhHHHHHHH
Q 024858 111 ---GKKFQ--VSVRQET------------SRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-----ACNLGLCLIK 168 (261)
Q Consensus 111 ---~~~~~--~~l~p~~------------~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-----~~~L~~~l~~ 168 (261)
...++ +.+.|++ -..+..-|.-....|++.+|.+.|..+|.++|++.. +.|.+.+..+
T Consensus 220 ~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~r 299 (486)
T KOG0550|consen 220 DKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIR 299 (486)
T ss_pred HHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcc
Confidence 01121 3444443 335567788889999999999999999999999863 5689999999
Q ss_pred cCCHHHHHHHHHHHHhC
Q 024858 169 RTRYNEARSVLEDVLYG 185 (261)
Q Consensus 169 ~g~~~eA~~~~~~~l~~ 185 (261)
.|+..+|+.-+..++..
T Consensus 300 Lgrl~eaisdc~~Al~i 316 (486)
T KOG0550|consen 300 LGRLREAISDCNEALKI 316 (486)
T ss_pred cCCchhhhhhhhhhhhc
Confidence 99999999999999998
No 145
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.81 E-value=7.7e-09 Score=72.12 Aligned_cols=65 Identities=29% Similarity=0.329 Sum_probs=54.9
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CCCch---h-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 121 ETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMI----DPDAN---K-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 121 ~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~----~P~~~---~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
+...++.++|.+|..+|++++|+.+|++++.+ .++++ . +.++|.++..+|++++|+.++++++..
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 34578999999999999999999999999975 22332 3 579999999999999999999999874
No 146
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=7.5e-07 Score=79.37 Aligned_cols=171 Identities=11% Similarity=0.035 Sum_probs=132.6
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 024858 12 AIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLR 91 (261)
Q Consensus 12 A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~ 91 (261)
+..++-.-...-|++.+.+..+|.++...|++++|+..|+++..++|.. ...--..|.++...|+++.-..+-...+.
T Consensus 217 ~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~--i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~ 294 (564)
T KOG1174|consen 217 QTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDN--VEAMDLYAVLLGQEGGCEQDSALMDYLFA 294 (564)
T ss_pred hHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhh--hhhHHHHHHHHHhccCHhhHHHHHHHHHh
Confidence 3344444456778999999999999999999999999999999999973 22223356667899999999888888888
Q ss_pred hhcch--hhhc-Ccc---hHH---HhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhh
Q 024858 92 LIYQG--EAFN-GKP---TKT---ARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACN 161 (261)
Q Consensus 92 l~~~~--~~~~-~~~---~~~---~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~ 161 (261)
+.... .|++ +.. .+. +...+. -.|.++|.+..++..-|.++.+.|+.++|+-.||.|..+.|-... +..
T Consensus 295 ~~~~ta~~wfV~~~~l~~~K~~~rAL~~~e-K~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~G 373 (564)
T KOG1174|consen 295 KVKYTASHWFVHAQLLYDEKKFERALNFVE-KCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRG 373 (564)
T ss_pred hhhcchhhhhhhhhhhhhhhhHHHHHHHHH-HHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHH
Confidence 75322 3444 110 010 100000 016888999999999999999999999999999999999999998 889
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 162 LGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 162 L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
|-.+|...|++.||...-..+...
T Consensus 374 L~hsYLA~~~~kEA~~~An~~~~~ 397 (564)
T KOG1174|consen 374 LFHSYLAQKRFKEANALANWTIRL 397 (564)
T ss_pred HHHHHHhhchHHHHHHHHHHHHHH
Confidence 999999999999999887766553
No 147
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.79 E-value=1.8e-08 Score=68.17 Aligned_cols=53 Identities=26% Similarity=0.448 Sum_probs=49.6
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 133 YMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 133 ~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
+.++|++++|+..|++++..+|++.. ++.+|.+|.++|++++|..++++++..
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 36789999999999999999999999 999999999999999999999999997
No 148
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.79 E-value=1.9e-08 Score=83.05 Aligned_cols=106 Identities=19% Similarity=0.151 Sum_probs=91.2
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchhhHHHHHHHHHHHHhcC
Q 024858 132 AYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELLLELESKQ 210 (261)
Q Consensus 132 ~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~a~~~l~~l~~~~ 210 (261)
...+.++.+.|.+.|.+++++-|+... |+.+|..-.+.|+++.|.+.|+++++. ++++.. -+..-|+-+....
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~l---dp~D~~---gaa~kLa~lg~~e 77 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL---DPEDHG---GAALKLAVLGRGE 77 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcC---Cccccc---chhhhHHhhcCCC
Confidence 445789999999999999999999999 999999999999999999999999998 443322 3667777787767
Q ss_pred CCCchhhhcccchhHHHHHHHHHHHHhhccCCC
Q 024858 211 PPPDLSDLLGLNLEDEFVNGLEEMVRVWAPSRS 243 (261)
Q Consensus 211 ~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~ 243 (261)
.|..+++.|+..|||.|++.|+..+...++|+.
T Consensus 78 ~p~~pP~aYVe~LFD~~Ae~Fd~~LVdkL~Y~v 110 (287)
T COG4976 78 TPEKPPSAYVETLFDQYAERFDHILVDKLGYSV 110 (287)
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 778888899999999999999999877667763
No 149
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.78 E-value=4.9e-07 Score=83.48 Aligned_cols=184 Identities=19% Similarity=0.172 Sum_probs=118.9
Q ss_pred hhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHH-----------------------------
Q 024858 4 LVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFR----------------------------- 54 (261)
Q Consensus 4 ~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~----------------------------- 54 (261)
..++++++|+.-..+.+...|+...+++---+.+++.++|++|...++.-.
T Consensus 23 ~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~~ 102 (652)
T KOG2376|consen 23 GKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEALKTL 102 (652)
T ss_pred ccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHHHHHH
Confidence 457889999999999999989988888776677777777777765433211
Q ss_pred -hcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchh--hh-cCcchHHHhhchhhhh-hhcCCC-cHHHHHH
Q 024858 55 -GLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGE--AF-NGKPTKTARSHGKKFQ-VSVRQE-TSRLLGN 128 (261)
Q Consensus 55 -~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~--~~-~~~~~~~~~~~~~~~~-~~l~p~-~~~~~~~ 128 (261)
.+++.+ ..+.-+-+.++.+.|+|++|..+|+..++-..++. -. .+.............+ +-..|+ .-+.++|
T Consensus 103 ~~~~~~~--~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN 180 (652)
T KOG2376|consen 103 KGLDRLD--DKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYN 180 (652)
T ss_pred hcccccc--hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHH
Confidence 111111 01223346667788888888888888776532110 00 0000000000010011 122233 5568899
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhh-------CCCc--------hh-hhhHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 024858 129 LAWAYMQKTNFMAAEVVYQKAQMI-------DPDA--------NK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPG 189 (261)
Q Consensus 129 Lg~~~~~~g~~~eA~~~~~~al~~-------~P~~--------~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~~~~ 189 (261)
.+.++...|+|.+|++.+++|+.+ +-++ .. ...|+.+|..+|+.+||...|..++..++.+
T Consensus 181 ~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D 257 (652)
T KOG2376|consen 181 TACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPAD 257 (652)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999542 1111 12 4579999999999999999999999985443
No 150
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=1.1e-07 Score=84.56 Aligned_cols=106 Identities=21% Similarity=0.209 Sum_probs=85.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 024858 69 LIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQK 148 (261)
Q Consensus 69 L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~ 148 (261)
-|+.|.+.|+|..|+..|++++...+....+... ..+... . -.-.++.||+.||..+++|.+|+....+
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~e-------e~~~~~-~---~k~~~~lNlA~c~lKl~~~~~Ai~~c~k 282 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEE-------EQKKAE-A---LKLACHLNLAACYLKLKEYKEAIESCNK 282 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHhhccccCCHH-------HHHHHH-H---HHHHHhhHHHHHHHhhhhHHHHHHHHHH
Confidence 5677899999999999999999875321111100 000000 0 0123789999999999999999999999
Q ss_pred HHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 149 AQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 149 al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
+|.++|+|.. .+.-|.++..+|+|+.|+..|++++..
T Consensus 283 vLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 283 VLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 9999999999 999999999999999999999999998
No 151
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.75 E-value=5.8e-08 Score=67.60 Aligned_cols=70 Identities=26% Similarity=0.386 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 024858 64 SLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAE 143 (261)
Q Consensus 64 ~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~ 143 (261)
...+.+|.+|..+|++++|+..|++++++.. ..+... |+...++.++|.+|..+|++++|+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~--------------~~~~~~-----~~~a~~~~~lg~~~~~~g~~~~A~ 66 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEE--------------QLGDDH-----PDTANTLNNLGECYYRLGDYEEAL 66 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH--------------HTTTHH-----HHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--------------HHCCCC-----HHHHHHHHHHHHHHHHcCCHHHHH
Confidence 3456799999999999999999999999731 111100 123468999999999999999999
Q ss_pred HHHHHHHhh
Q 024858 144 VVYQKAQMI 152 (261)
Q Consensus 144 ~~~~~al~~ 152 (261)
.+|++++++
T Consensus 67 ~~~~~al~i 75 (78)
T PF13424_consen 67 EYYQKALDI 75 (78)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 999999986
No 152
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.74 E-value=3.7e-08 Score=66.61 Aligned_cols=65 Identities=22% Similarity=0.149 Sum_probs=56.0
Q ss_pred hhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHH
Q 024858 4 LVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLI 70 (261)
Q Consensus 4 ~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~ 70 (261)
+..|++++|+..|++++..+|++.+++..+|.++...|++++|.+.+++++..+|++ ..+..+++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~--~~~~~l~a 66 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN--PEYQQLLA 66 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH--HHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH--HHHHHHHh
Confidence 567999999999999999999999999999999999999999999999999999984 33444444
No 153
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.72 E-value=8.2e-08 Score=65.85 Aligned_cols=37 Identities=19% Similarity=0.154 Sum_probs=20.2
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh
Q 024858 122 TSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK 158 (261)
Q Consensus 122 ~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~ 158 (261)
++..+...|.+|..+|++.+|...|+++++..|++..
T Consensus 28 ~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~ 64 (73)
T PF13371_consen 28 DPELWLQRARCLFQLGRYEEALEDLERALELSPDDPD 64 (73)
T ss_pred cchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHH
Confidence 3445555555555555555555555555555555543
No 154
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.72 E-value=7.8e-08 Score=65.98 Aligned_cols=57 Identities=32% Similarity=0.407 Sum_probs=54.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 129 LAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 129 Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
|..+|.+++++++|+.++++++.++|+++. +...|.++..+|++++|+..+++++..
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999 999999999999999999999999997
No 155
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.71 E-value=7.4e-08 Score=87.30 Aligned_cols=71 Identities=10% Similarity=0.047 Sum_probs=64.4
Q ss_pred cCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 024858 22 AGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQE-SLDNVLIDLYKKCGKVEEQIEMLKRKLRL 92 (261)
Q Consensus 22 ~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~-~~~~~L~~ly~~~g~~~eA~~~~~~al~l 92 (261)
.+|+++.++.++|.+|..+|++++|+..|+++++++|+++.. ..++++|.+|..+|++++|++.|++++++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 578999999999999999999999999999999999996422 34566999999999999999999999997
No 156
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.69 E-value=5.7e-07 Score=81.53 Aligned_cols=114 Identities=19% Similarity=0.142 Sum_probs=99.1
Q ss_pred hcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHH
Q 024858 5 VQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIE 84 (261)
Q Consensus 5 ~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~ 84 (261)
..++++.|+.+|++..+.+|+ +...|+.++...++-.+|+..+.++++..|.+ ..+....+..+.+.|+++.|++
T Consensus 181 ~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d--~~LL~~Qa~fLl~k~~~~lAL~ 255 (395)
T PF09295_consen 181 LTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQD--SELLNLQAEFLLSKKKYELALE 255 (395)
T ss_pred hcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhcCCHHHHHH
Confidence 457899999999999988876 44568999999999999999999999999985 3466678999999999999999
Q ss_pred HHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 024858 85 MLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKA 149 (261)
Q Consensus 85 ~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~a 149 (261)
+.++++.+.| +.-..|..|+.+|..+|++++|+..+..+
T Consensus 256 iAk~av~lsP--------------------------~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 256 IAKKAVELSP--------------------------SEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHhCc--------------------------hhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 9999999854 45579999999999999999999877643
No 157
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.69 E-value=1.5e-06 Score=87.17 Aligned_cols=165 Identities=15% Similarity=0.018 Sum_probs=123.4
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCCh-----HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCc----hhHHHHHHHHHHHH
Q 024858 3 QLVQKDPEAAIVLFWKAINAGDRV-----DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK----QSQESLDNVLIDLY 73 (261)
Q Consensus 3 ~~~~~~~~~A~~~~~~al~~~p~~-----~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~----~~~~~~~~~L~~ly 73 (261)
....|++++|..++++++...|.. ..++..+|.++...|++++|...+++++..... .........++.++
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 456899999999999999743332 245677999999999999999999998765332 11122345688999
Q ss_pred HHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 024858 74 KKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMID 153 (261)
Q Consensus 74 ~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~ 153 (261)
...|++++|...+++++.+... .+..- .+....++..+|.++..+|++++|...+++++.+.
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~--------------~~~~~----~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~ 603 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEE--------------QHLEQ----LPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVL 603 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHH--------------hcccc----ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhh
Confidence 9999999999999999987321 00000 00012346678999999999999999999998864
Q ss_pred CC----c-hh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 154 PD----A-NK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 154 P~----~-~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
.. . .. +..+|.++...|++++|...+.++...
T Consensus 604 ~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~ 641 (903)
T PRK04841 604 SNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENL 641 (903)
T ss_pred hccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 32 1 23 457899999999999999999988653
No 158
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.68 E-value=4.2e-07 Score=77.22 Aligned_cols=106 Identities=15% Similarity=0.070 Sum_probs=82.7
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHhcCCchh-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHh
Q 024858 30 LKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQS-QESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTAR 108 (261)
Q Consensus 30 l~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~-~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~ 108 (261)
.++.+.-+...|+|.+|+..|...++.+|+.. .....+.||.++..+|++++|...|..+.+-.|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~------------- 210 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPK------------- 210 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCC-------------
Confidence 67778888888888888888888888888631 1134556888888888888888888888875441
Q ss_pred hchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh
Q 024858 109 SHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK 158 (261)
Q Consensus 109 ~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~ 158 (261)
.|.-|++++-||.+...+|+.++|..+|+++++..|+...
T Consensus 211 ----------s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~a 250 (262)
T COG1729 211 ----------SPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDA 250 (262)
T ss_pred ----------CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHH
Confidence 1335678888888888888888888888888888888765
No 159
>PLN03077 Protein ECB2; Provisional
Probab=98.65 E-value=2.4e-06 Score=85.40 Aligned_cols=194 Identities=11% Similarity=0.011 Sum_probs=134.2
Q ss_pred hcCCHHHHHHHHHHHHHcCCC-hHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHH
Q 024858 5 VQKDPEAAIVLFWKAINAGDR-VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQI 83 (261)
Q Consensus 5 ~~~~~~~A~~~~~~al~~~p~-~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~ 83 (261)
..|+++.+...+..+++.+-. +......|-..|.+.|+.++|...++.. .|+ ...++.++..|.+.|+.++|+
T Consensus 501 ~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~---~~d---~~s~n~lI~~~~~~G~~~~A~ 574 (857)
T PLN03077 501 RIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH---EKD---VVSWNILLTGYVAHGKGSMAV 574 (857)
T ss_pred hhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc---CCC---hhhHHHHHHHHHHcCCHHHHH
Confidence 457889999999998874432 2334566788999999999999999886 444 235677889999999999999
Q ss_pred HHHHHHHHhh--cchhhhcCcchHHHhhch------hhhh-----hhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 024858 84 EMLKRKLRLI--YQGEAFNGKPTKTARSHG------KKFQ-----VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQ 150 (261)
Q Consensus 84 ~~~~~al~l~--~~~~~~~~~~~~~~~~~~------~~~~-----~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al 150 (261)
++|++..+.. |....|+..... +...+ ..|. .-+.|+ ...+..+..+|.+.|+++||...+++.
T Consensus 575 ~lf~~M~~~g~~Pd~~T~~~ll~a-~~~~g~v~ea~~~f~~M~~~~gi~P~-~~~y~~lv~~l~r~G~~~eA~~~~~~m- 651 (857)
T PLN03077 575 ELFNRMVESGVNPDEVTFISLLCA-CSRSGMVTQGLEYFHSMEEKYSITPN-LKHYACVVDLLGRAGKLTEAYNFINKM- 651 (857)
T ss_pred HHHHHHHHcCCCCCcccHHHHHHH-HhhcChHHHHHHHHHHHHHHhCCCCc-hHHHHHHHHHHHhCCCHHHHHHHHHHC-
Confidence 9999988742 332233211000 00000 1111 123444 367888999999999999999999885
Q ss_pred hhCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCCCc----------chhhHHHHHHHHHHHH
Q 024858 151 MIDPDANKACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCE----------DGRTRKRAEELLLELE 207 (261)
Q Consensus 151 ~~~P~~~~~~~L~~~l~~~g~~~eA~~~~~~~l~~~~~~~~----------~~~~~~~a~~~l~~l~ 207 (261)
.+.|+...|..|-..+...|+.+.+....+++++..+.+.. ..+.++.+..+...+.
T Consensus 652 ~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~ 718 (857)
T PLN03077 652 PITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMR 718 (857)
T ss_pred CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 46777555877777888899999999999999887333221 2344555666655554
No 160
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.62 E-value=4.3e-06 Score=83.86 Aligned_cols=163 Identities=14% Similarity=-0.037 Sum_probs=122.9
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCC---------hHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCch-h--HHHHHHHHH
Q 024858 3 QLVQKDPEAAIVLFWKAINAGDR---------VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ-S--QESLDNVLI 70 (261)
Q Consensus 3 ~~~~~~~~~A~~~~~~al~~~p~---------~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~-~--~~~~~~~L~ 70 (261)
.+..|++++|..++..+...-+. .......+|.++...|++++|...+++++...|.. . .....+.++
T Consensus 419 ~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg 498 (903)
T PRK04841 419 AQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLG 498 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHH
Confidence 35678999999999988753111 23445567889999999999999999998865542 1 122346688
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 024858 71 DLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQ 150 (261)
Q Consensus 71 ~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al 150 (261)
.++...|++++|...+++++.... ..+.... ...++.++|.++..+|++++|...+++++
T Consensus 499 ~~~~~~G~~~~A~~~~~~al~~~~--------------~~g~~~~------~~~~~~~la~~~~~~G~~~~A~~~~~~al 558 (903)
T PRK04841 499 EVHHCKGELARALAMMQQTEQMAR--------------QHDVYHY------ALWSLLQQSEILFAQGFLQAAYETQEKAF 558 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHh--------------hhcchHH------HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 889999999999999999998632 1111000 12467889999999999999999999999
Q ss_pred hhCC-----Cc---hh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 151 MIDP-----DA---NK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 151 ~~~P-----~~---~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
.+-. +. .. +..+|.++..+|++++|...+++++..
T Consensus 559 ~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~ 602 (903)
T PRK04841 559 QLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEV 602 (903)
T ss_pred HHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh
Confidence 8632 11 12 447799999999999999999998774
No 161
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.62 E-value=1.8e-06 Score=66.95 Aligned_cols=109 Identities=19% Similarity=0.109 Sum_probs=90.1
Q ss_pred hHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCch-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcch
Q 024858 26 VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ-SQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPT 104 (261)
Q Consensus 26 ~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~-~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~ 104 (261)
.+..+..-|.-..+.|+|.+|++.++.+....|-. ........|+.+|.+.|++++|+..+++-+++.|..
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~h-------- 80 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTH-------- 80 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--------
Confidence 45668888999999999999999999999999952 112355669999999999999999999999997621
Q ss_pred HHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCC---------------HHHHHHHHHHHHhhCCCch
Q 024858 105 KTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTN---------------FMAAEVVYQKAQMIDPDAN 157 (261)
Q Consensus 105 ~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~---------------~~eA~~~~~~al~~~P~~~ 157 (261)
|+-+-+++..|.++..+.. ..+|...|++.+...|++.
T Consensus 81 ---------------p~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 81 ---------------PNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred ---------------CCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence 2345588888999988877 8888888888888888875
No 162
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.59 E-value=2.7e-07 Score=82.18 Aligned_cols=179 Identities=22% Similarity=0.210 Sum_probs=120.4
Q ss_pred hcCCHHHHHHHHHHHHHcCCChHHH----HHHHHHHHHHcCCcHHHHHHHHHHH----hcCCc--hhHHHHHHHHHHHHH
Q 024858 5 VQKDPEAAIVLFWKAINAGDRVDSA----LKDMAVVMKQLDRSEEAIEAIKSFR----GLCSK--QSQESLDNVLIDLYK 74 (261)
Q Consensus 5 ~~~~~~~A~~~~~~al~~~p~~~~a----l~~Lg~~~~~~g~~~eAi~~~~~~~----~~~P~--~~~~~~~~~L~~ly~ 74 (261)
.-||....+.+|++|++.+.++-.. +..||..|.-+++|++|.++-..-+ .++.. .+. .-+| ||+++.
T Consensus 29 k~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAK-ssgN-LGNtlK 106 (639)
T KOG1130|consen 29 KMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAK-SSGN-LGNTLK 106 (639)
T ss_pred hccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccc-cccc-ccchhh
Confidence 3578889999999999988876544 4458888888999999998643321 12221 221 1233 788889
Q ss_pred HcCCHHHHHHHHHHHHHhhcc--------------hhhhc--CcchHH--H---hhch-----------hhhh--hhcCC
Q 024858 75 KCGKVEEQIEMLKRKLRLIYQ--------------GEAFN--GKPTKT--A---RSHG-----------KKFQ--VSVRQ 120 (261)
Q Consensus 75 ~~g~~~eA~~~~~~al~l~~~--------------~~~~~--~~~~~~--~---~~~~-----------~~~~--~~l~p 120 (261)
..|.|++|+.+..+-|.+... ++.|. |+.... . ...+ +.+. +++.-
T Consensus 107 v~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~ 186 (639)
T KOG1130|consen 107 VKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSE 186 (639)
T ss_pred hhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988887421 11111 111000 0 0000 0011 11111
Q ss_pred C------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch------h-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 121 E------TSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN------K-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 121 ~------~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~------~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
. .-+++.|||..|.-+|+|+.|+.+.+.-|.+..... . +.|||+|++-.|+++.|+++|++.+..
T Consensus 187 ~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 187 KLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred HhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 1 123678999999999999999999999888765433 2 469999999999999999999987764
No 163
>PRK11906 transcriptional regulator; Provisional
Probab=98.58 E-value=1.6e-06 Score=78.92 Aligned_cols=116 Identities=10% Similarity=0.129 Sum_probs=93.1
Q ss_pred CcHHHHHHHHHHH---hcCCchhHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhhcchhhhcCcchHHHhh
Q 024858 42 RSEEAIEAIKSFR---GLCSKQSQESLDNVLIDLYKKC---------GKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARS 109 (261)
Q Consensus 42 ~~~eAi~~~~~~~---~~~P~~~~~~~~~~L~~ly~~~---------g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~ 109 (261)
..+.|..++.+++ .++|+.+ ..+..++.++... ....+|.+.-+++++
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a--~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve------------------ 332 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKT--ECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD------------------ 332 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccH--HHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh------------------
Confidence 4567778899999 9999843 3444455555432 223344444444444
Q ss_pred chhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 110 HGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 110 ~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
++|+++.++..+|.++...|+++.|+..|++|+.++|+.+. ++..|.+..-.|+.++|.+..++++..
T Consensus 333 --------ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL 401 (458)
T PRK11906 333 --------ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQL 401 (458)
T ss_pred --------cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 45788999999999999999999999999999999999999 999999999999999999999999998
No 164
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.55 E-value=1.9e-05 Score=63.03 Aligned_cols=88 Identities=24% Similarity=0.293 Sum_probs=72.5
Q ss_pred hhcCCHHHHHHHHHHHHH--cCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHH-HHHHcCCHH
Q 024858 4 LVQKDPEAAIVLFWKAIN--AGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLID-LYKKCGKVE 80 (261)
Q Consensus 4 ~~~~~~~~A~~~~~~al~--~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~-ly~~~g~~~ 80 (261)
...+++..+...+...+. ..+.....+..++......+.+.+++..+..+....+.... ....... +|...|+++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 147 (291)
T COG0457 70 LKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDL--AEALLALGALYELGDYE 147 (291)
T ss_pred HHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcch--HHHHHHHHHHHHcCCHH
Confidence 456788899999998887 78888999999999999999999999999999998776311 2222344 789999999
Q ss_pred HHHHHHHHHHHhh
Q 024858 81 EQIEMLKRKLRLI 93 (261)
Q Consensus 81 eA~~~~~~al~l~ 93 (261)
+|+..|.+++...
T Consensus 148 ~a~~~~~~~~~~~ 160 (291)
T COG0457 148 EALELYEKALELD 160 (291)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999998853
No 165
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.53 E-value=1.6e-07 Score=58.22 Aligned_cols=41 Identities=27% Similarity=0.205 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHH
Q 024858 124 RLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGL 164 (261)
Q Consensus 124 ~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~ 164 (261)
+++..+|.+|.++|++++|++.|+++++.+|+++. |..||.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 57899999999999999999999999999999999 888875
No 166
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.52 E-value=2.3e-05 Score=62.49 Aligned_cols=175 Identities=24% Similarity=0.224 Sum_probs=100.7
Q ss_pred CCHHHHHHHHHHHHHcCCC--hHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--cCCchhHHHHHHHHHHHHHHcCCHHHH
Q 024858 7 KDPEAAIVLFWKAINAGDR--VDSALKDMAVVMKQLDRSEEAIEAIKSFRG--LCSKQSQESLDNVLIDLYKKCGKVEEQ 82 (261)
Q Consensus 7 ~~~~~A~~~~~~al~~~p~--~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~--~~P~~~~~~~~~~L~~ly~~~g~~~eA 82 (261)
+....+...+...+...+. ........+..+...+.+..++..+..... ..+. ........+..+...+.+.++
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 114 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPN--LAEALLNLGLLLEALGKYEEA 114 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccc--hHHHHHHHHHHHHHHhhHHHH
Confidence 4566677888888887776 367788889999999999999998888876 4554 233445577888888999999
Q ss_pred HHHHHHHHHhhcchhh---hc--------CcchHHHhhchhhhhhhcCC---CcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 024858 83 IEMLKRKLRLIYQGEA---FN--------GKPTKTARSHGKKFQVSVRQ---ETSRLLGNLAWAYMQKTNFMAAEVVYQK 148 (261)
Q Consensus 83 ~~~~~~al~l~~~~~~---~~--------~~~~~~~~~~~~~~~~~l~p---~~~~~~~~Lg~~~~~~g~~~eA~~~~~~ 148 (261)
+..+.+++...+.... .. +......... ... +.+.| ........++..+...+++++|+..+.+
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 192 (291)
T COG0457 115 LELLEKALALDPDPDLAEALLALGALYELGDYEEALELY-EKA-LELDPELNELAEALLALGALLEALGRYEEALELLEK 192 (291)
T ss_pred HHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHH-HHH-HhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHH
Confidence 9999998876432100 00 0000000000 000 11222 2233334444444555555555555555
Q ss_pred HHhhCCC-chh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 149 AQMIDPD-ANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 149 al~~~P~-~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
++...|+ ... ...++.++...+++++|...+.+++..
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 231 (291)
T COG0457 193 ALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL 231 (291)
T ss_pred HHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh
Confidence 5555555 343 445555555555555555555555553
No 167
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.46 E-value=4e-06 Score=73.32 Aligned_cols=129 Identities=17% Similarity=0.088 Sum_probs=92.8
Q ss_pred chhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcC--CcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCH
Q 024858 2 VQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLD--RSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKV 79 (261)
Q Consensus 2 ~~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g--~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~ 79 (261)
+.|..++++.|...+...-+.+++..-+....+.+....| .+.+|.-.|+......|.. ..+.+.++.++..+|+|
T Consensus 140 i~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t--~~~lng~A~~~l~~~~~ 217 (290)
T PF04733_consen 140 ILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGST--PKLLNGLAVCHLQLGHY 217 (290)
T ss_dssp HHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--S--HHHHHHHHHHHHHCT-H
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCC--HHHHHHHHHHHHHhCCH
Confidence 3467788888888888877777665433333344444444 6888888888877776552 34566678888889999
Q ss_pred HHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhhCCCchh
Q 024858 80 EEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNF-MAAEVVYQKAQMIDPDANK 158 (261)
Q Consensus 80 ~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~-~eA~~~~~~al~~~P~~~~ 158 (261)
++|+..+++++.. +|++++++.|++.+...+|+. +++.++..+....+|+++-
T Consensus 218 ~eAe~~L~~al~~--------------------------~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~ 271 (290)
T PF04733_consen 218 EEAEELLEEALEK--------------------------DPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPL 271 (290)
T ss_dssp HHHHHHHHHHCCC---------------------------CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHH
T ss_pred HHHHHHHHHHHHh--------------------------ccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChH
Confidence 9999888887765 356789999999999999999 6677788888889999875
No 168
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.40 E-value=7e-07 Score=51.85 Aligned_cols=34 Identities=35% Similarity=0.449 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 024858 123 SRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDA 156 (261)
Q Consensus 123 ~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~ 156 (261)
+.+|.++|.+|..+|++++|+..|++|++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 3589999999999999999999999999999985
No 169
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.38 E-value=1.7e-05 Score=74.58 Aligned_cols=131 Identities=18% Similarity=0.117 Sum_probs=98.1
Q ss_pred hcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHH
Q 024858 5 VQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIE 84 (261)
Q Consensus 5 ~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~ 84 (261)
..|++++|+.+..+||...|..++.+...|.++...|++.+|.+.++.+..+++.| ..+.+-.+.-+.+.|+.++|+.
T Consensus 206 ~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~D--RyiNsK~aKy~LRa~~~e~A~~ 283 (517)
T PF12569_consen 206 YLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLAD--RYINSKCAKYLLRAGRIEEAEK 283 (517)
T ss_pred HhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhh--HHHHHHHHHHHHHCCCHHHHHH
Confidence 46888999999999999999999999999999999999999999999999998873 4456667777788999999988
Q ss_pred HHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 024858 85 MLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDP 154 (261)
Q Consensus 85 ~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P 154 (261)
....-.+-.. ....+ ... .+ --+....-|.+|.++|++..|++.|..+.+..-
T Consensus 284 ~~~~Ftr~~~--~~~~~-L~~--------mQ------c~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~ 336 (517)
T PF12569_consen 284 TASLFTREDV--DPLSN-LND--------MQ------CMWFETECAEAYLRQGDYGLALKRFHAVLKHFD 336 (517)
T ss_pred HHHhhcCCCC--CcccC-HHH--------HH------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 7776443210 00000 000 00 012334579999999999999999999998654
No 170
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.38 E-value=1.6e-05 Score=61.67 Aligned_cols=80 Identities=20% Similarity=0.210 Sum_probs=65.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 024858 69 LIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQK 148 (261)
Q Consensus 69 L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~ 148 (261)
-|.-..+.|+|++|++.++.+....|.+. -.+.+...||.+|...|++++|+..+++
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~-----------------------ya~qAqL~l~yayy~~~~y~~A~a~~~r 72 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFGE-----------------------YAEQAQLDLAYAYYKQGDYEEAIAAYDR 72 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCc-----------------------ccHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 56666899999999999999877655321 1245789999999999999999999999
Q ss_pred HHhhCCCchh----hhhHHHHHHHcCC
Q 024858 149 AQMIDPDANK----ACNLGLCLIKRTR 171 (261)
Q Consensus 149 al~~~P~~~~----~~~L~~~l~~~g~ 171 (261)
-++++|+++. ++..|.++..+..
T Consensus 73 FirLhP~hp~vdYa~Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 73 FIRLHPTHPNVDYAYYMRGLSYYEQDE 99 (142)
T ss_pred HHHhCCCCCCccHHHHHHHHHHHHHhh
Confidence 9999999984 4566887777665
No 171
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.36 E-value=0.00028 Score=62.88 Aligned_cols=206 Identities=17% Similarity=0.123 Sum_probs=134.9
Q ss_pred CchhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHH
Q 024858 1 MVQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVE 80 (261)
Q Consensus 1 ~~~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~ 80 (261)
|..+.+|||.+|+....++-+..+...-++..-+..-.++|+.+.|=.++.++.+..|++ ........+.++..+|++.
T Consensus 92 l~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~-~l~v~ltrarlll~~~d~~ 170 (400)
T COG3071 92 LLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDD-TLAVELTRARLLLNRRDYP 170 (400)
T ss_pred HHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCc-hHHHHHHHHHHHHhCCCch
Confidence 356889999999999999888777766666666777789999999999999999885553 3445666788899999999
Q ss_pred HHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---------
Q 024858 81 EQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQM--------- 151 (261)
Q Consensus 81 eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~--------- 151 (261)
.|.....+++++.| .++.++.-.-.+|.+.|++.+......+.-+
T Consensus 171 aA~~~v~~ll~~~p--------------------------r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~ 224 (400)
T COG3071 171 AARENVDQLLEMTP--------------------------RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEA 224 (400)
T ss_pred hHHHHHHHHHHhCc--------------------------CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHH
Confidence 99999999988754 2344444445555555555544444433322
Q ss_pred -----------------------------hCCC----chh-hhhHHHHHHHcCCHHHHHHHHHHHHhCCCCC--------
Q 024858 152 -----------------------------IDPD----ANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPG-------- 189 (261)
Q Consensus 152 -----------------------------~~P~----~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~~~~-------- 189 (261)
--|+ ++. ...++.-+...|++++|.++.++++...+.+
T Consensus 225 ~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~ 304 (400)
T COG3071 225 ARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPR 304 (400)
T ss_pred HHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhh
Confidence 1222 223 3456777788899999999999998863211
Q ss_pred --CcchhhHHHHHHHHHHHHhcCCCCchhhhcccch-----hHHHHHHHHHHH
Q 024858 190 --CEDGRTRKRAEELLLELESKQPPPDLSDLLGLNL-----EDEFVNGLEEMV 235 (261)
Q Consensus 190 --~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~-----~d~~~~~~~~~l 235 (261)
+.++....++ +-..+...+.++.....+|+.. ++.+.+.|+..+
T Consensus 305 l~~~d~~~l~k~--~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl 355 (400)
T COG3071 305 LRPGDPEPLIKA--AEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAAL 355 (400)
T ss_pred cCCCCchHHHHH--HHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 1111111111 1122333344456666677655 466666666555
No 172
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.35 E-value=8.3e-06 Score=65.37 Aligned_cols=50 Identities=24% Similarity=0.240 Sum_probs=37.2
Q ss_pred hhcCCCcHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHhhCCCchh-hhhHHHH
Q 024858 116 VSVRQETSRLLGNLAWAYMQKTN-----------FMAAEVVYQKAQMIDPDANK-ACNLGLC 165 (261)
Q Consensus 116 ~~l~p~~~~~~~~Lg~~~~~~g~-----------~~eA~~~~~~al~~~P~~~~-~~~L~~~ 165 (261)
+.|+|+.++++.++|.+|..++. |++|..+|++|+..+|+|.. ...|..+
T Consensus 62 L~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 62 LKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA 123 (186)
T ss_dssp HHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred HhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 44567888999999999987665 78899999999999999987 5555554
No 173
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.34 E-value=7.5e-06 Score=69.66 Aligned_cols=98 Identities=16% Similarity=0.159 Sum_probs=83.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 024858 69 LIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQK 148 (261)
Q Consensus 69 L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~ 148 (261)
.+--+.+.|+|.+|++.|+.-++..|.+. -.+++++-||.++..+|+|++|...|..
T Consensus 147 ~A~~~~ksgdy~~A~~~F~~fi~~YP~s~-----------------------~~~nA~yWLGe~~y~qg~y~~Aa~~f~~ 203 (262)
T COG1729 147 AALDLYKSGDYAEAEQAFQAFIKKYPNST-----------------------YTPNAYYWLGESLYAQGDYEDAAYIFAR 203 (262)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCc-----------------------ccchhHHHHHHHHHhcccchHHHHHHHH
Confidence 44455788999999999999999755211 1356889999999999999999999999
Q ss_pred HHhhCCCch---h-hhhHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 024858 149 AQMIDPDAN---K-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGC 190 (261)
Q Consensus 149 al~~~P~~~---~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~~~~~ 190 (261)
+.+-.|+++ + .+.||.++..+|+.++|...+++++.. +|+.
T Consensus 204 ~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~-YP~t 248 (262)
T COG1729 204 VVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKR-YPGT 248 (262)
T ss_pred HHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-CCCC
Confidence 999999886 4 789999999999999999999999998 4444
No 174
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.34 E-value=1.3e-05 Score=70.55 Aligned_cols=173 Identities=20% Similarity=0.154 Sum_probs=124.4
Q ss_pred hhcCCHHHHHHHHHHHHHcCCChH-HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHH
Q 024858 4 LVQKDPEAAIVLFWKAINAGDRVD-SALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ 82 (261)
Q Consensus 4 ~~~~~~~~A~~~~~~al~~~p~~~-~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA 82 (261)
+...|+..|+.+++-....+.... +.-.-+|.++...|+|++|...|+-+...+ +++..++..|+-++.-.|.|.+|
T Consensus 33 ls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~--~~~~el~vnLAcc~FyLg~Y~eA 110 (557)
T KOG3785|consen 33 LSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD--DAPAELGVNLACCKFYLGQYIEA 110 (557)
T ss_pred HhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC--CCCcccchhHHHHHHHHHHHHHH
Confidence 567899999999998887665544 444458999999999999999998877632 22345666789899999999999
Q ss_pred HHHHHHHHHhhcchh--hhc-----CcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 024858 83 IEMLKRKLRLIYQGE--AFN-----GKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPD 155 (261)
Q Consensus 83 ~~~~~~al~l~~~~~--~~~-----~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~ 155 (261)
..+-.++-+- |-.. .++ +...+.. .|+-.+ ++..+-...|+.+....-.|.||+..|+++|.-+|+
T Consensus 111 ~~~~~ka~k~-pL~~RLlfhlahklndEk~~~-----~fh~~L-qD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~e 183 (557)
T KOG3785|consen 111 KSIAEKAPKT-PLCIRLLFHLAHKLNDEKRIL-----TFHSSL-QDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPE 183 (557)
T ss_pred HHHHhhCCCC-hHHHHHHHHHHHHhCcHHHHH-----HHHHHH-hhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChh
Confidence 9887775442 2110 000 1111111 111111 122334566777877778999999999999999998
Q ss_pred chh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 156 ANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 156 ~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
... -.+++.||.++.=++-+.++..--+..
T Consensus 184 y~alNVy~ALCyyKlDYydvsqevl~vYL~q 214 (557)
T KOG3785|consen 184 YIALNVYMALCYYKLDYYDVSQEVLKVYLRQ 214 (557)
T ss_pred hhhhHHHHHHHHHhcchhhhHHHHHHHHHHh
Confidence 888 778999999999999998888877775
No 175
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.31 E-value=1.7e-06 Score=50.04 Aligned_cols=34 Identities=29% Similarity=0.344 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 024858 123 SRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDA 156 (261)
Q Consensus 123 ~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~ 156 (261)
+.++.++|.+|..+|++++|+..|+++++++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 3579999999999999999999999999999986
No 176
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.31 E-value=9.6e-05 Score=62.71 Aligned_cols=154 Identities=18% Similarity=0.140 Sum_probs=94.2
Q ss_pred HHHHHHHHcCC-ChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 024858 14 VLFWKAINAGD-RVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRL 92 (261)
Q Consensus 14 ~~~~~al~~~p-~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l 92 (261)
..++..+.... .+.-.+..-|.++...|++++|..+......+. ..+.+ ..++.+..+++-|+..+++...+
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE-----~~Al~--VqI~lk~~r~d~A~~~lk~mq~i 166 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLE-----AAALN--VQILLKMHRFDLAEKELKKMQQI 166 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHH-----HHHHH--HHHHHHHHHHHHHHHHHHHHHcc
Confidence 34444443333 333344455788999999999999887733331 11222 34557889999999999999988
Q ss_pred hcch------hhh-c---CcchHHHhhchhhhh----h-hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch
Q 024858 93 IYQG------EAF-N---GKPTKTARSHGKKFQ----V-SVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN 157 (261)
Q Consensus 93 ~~~~------~~~-~---~~~~~~~~~~~~~~~----~-~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~ 157 (261)
+... .++ . |.. + . ...|. + .--|-.+.+++..+.|++.+|+|+||...++.+|.-+|+++
T Consensus 167 ded~tLtQLA~awv~la~gge-k-~---qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dp 241 (299)
T KOG3081|consen 167 DEDATLTQLAQAWVKLATGGE-K-I---QDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDP 241 (299)
T ss_pred chHHHHHHHHHHHHHHhccch-h-h---hhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCH
Confidence 5321 111 1 100 0 0 00111 0 11233456677777778888888888888888888888777
Q ss_pred h-hhhHHHHHHHcCCHHHHHHHH
Q 024858 158 K-ACNLGLCLIKRTRYNEARSVL 179 (261)
Q Consensus 158 ~-~~~L~~~l~~~g~~~eA~~~~ 179 (261)
+ ..|+-.+-..+|...++..-+
T Consensus 242 etL~Nliv~a~~~Gkd~~~~~r~ 264 (299)
T KOG3081|consen 242 ETLANLIVLALHLGKDAEVTERN 264 (299)
T ss_pred HHHHHHHHHHHHhCCChHHHHHH
Confidence 7 777777777777766665444
No 177
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.30 E-value=5.2e-07 Score=52.63 Aligned_cols=32 Identities=28% Similarity=0.441 Sum_probs=28.3
Q ss_pred HHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHH
Q 024858 145 VYQKAQMIDPDANK-ACNLGLCLIKRTRYNEAR 176 (261)
Q Consensus 145 ~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~ 176 (261)
+|++|++++|+++. +++||.+|...|++++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 47889999999998 899999999999999886
No 178
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.29 E-value=9.8e-06 Score=66.04 Aligned_cols=95 Identities=22% Similarity=0.139 Sum_probs=81.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 024858 70 IDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKA 149 (261)
Q Consensus 70 ~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~a 149 (261)
|+-+++.|+|++|..-|..||++.|+... + .-.-.+.|-|.++..++.++.|+.-..+|
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~------e---------------~rsIly~Nraaa~iKl~k~e~aI~dcsKa 160 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTST------E---------------ERSILYSNRAAALIKLRKWESAIEDCSKA 160 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccH------H---------------HHHHHHhhhHHHHHHhhhHHHHHHHHHhh
Confidence 34447899999999999999999763210 0 01236789999999999999999999999
Q ss_pred HhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 150 QMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 150 l~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
++++|.+.. ...-+.+|-++.+|++|+.-|++++..
T Consensus 161 iel~pty~kAl~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 161 IELNPTYEKALERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred HhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 999999998 777899999999999999999999997
No 179
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.28 E-value=0.00013 Score=61.79 Aligned_cols=179 Identities=15% Similarity=0.100 Sum_probs=123.6
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCC---hHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHH-HHHHHHHHHHH---
Q 024858 3 QLVQKDPEAAIVLFWKAINAGDR---VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQES-LDNVLIDLYKK--- 75 (261)
Q Consensus 3 ~~~~~~~~~A~~~~~~al~~~p~---~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~-~~~~L~~ly~~--- 75 (261)
.|..|++++|+..|++.....|. ...+...++..+...+++++|+..+++.++++|.+++.. +..+.|..+..
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~ 123 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQID 123 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCC
Confidence 46789999999999988876554 567788899999999999999999999999999743222 23334433332
Q ss_pred -----cCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 024858 76 -----CGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQ 150 (261)
Q Consensus 76 -----~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al 150 (261)
+.-..+|+..++..+...| +.-+....... -..+. -..+.-=..+|..|.+.|.+..|+.-+++++
T Consensus 124 ~~~rDq~~~~~A~~~f~~~i~ryP-nS~Ya~dA~~~----i~~~~----d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~ 194 (254)
T COG4105 124 DVTRDQSAARAAFAAFKELVQRYP-NSRYAPDAKAR----IVKLN----DALAGHEMAIARYYLKRGAYVAAINRFEEVL 194 (254)
T ss_pred ccccCHHHHHHHHHHHHHHHHHCC-CCcchhhHHHH----HHHHH----HHHHHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 3335677888888888654 22111000000 00000 0011223568999999999999999999999
Q ss_pred hhCCCchh----hhhHHHHHHHcCCHHHHHHHHHHHHhCCCCCCc
Q 024858 151 MIDPDANK----ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCE 191 (261)
Q Consensus 151 ~~~P~~~~----~~~L~~~l~~~g~~~eA~~~~~~~l~~~~~~~~ 191 (261)
+..|+... +.-|..+|..+|-.++|... .+++..+.|++.
T Consensus 195 e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~-~~vl~~N~p~s~ 238 (254)
T COG4105 195 ENYPDTSAVREALARLEEAYYALGLTDEAKKT-AKVLGANYPDSQ 238 (254)
T ss_pred hccccccchHHHHHHHHHHHHHhCChHHHHHH-HHHHHhcCCCCc
Confidence 99887652 56789999999999999765 455555555544
No 180
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.28 E-value=6.8e-07 Score=52.15 Aligned_cols=34 Identities=26% Similarity=0.253 Sum_probs=30.5
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHH
Q 024858 15 LFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIE 48 (261)
Q Consensus 15 ~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~ 48 (261)
+|++||+.+|+++.++++||.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 4789999999999999999999999999999863
No 181
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.27 E-value=6.4e-05 Score=60.75 Aligned_cols=119 Identities=17% Similarity=0.183 Sum_probs=92.1
Q ss_pred HcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhc
Q 024858 39 QLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSV 118 (261)
Q Consensus 39 ~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l 118 (261)
+.=+.+.+..-..+.+...|...+ ..-|++.+.+.||+.||...|++++.-..
T Consensus 68 q~ldP~R~~Rea~~~~~~ApTvqn---r~rLa~al~elGr~~EA~~hy~qalsG~f------------------------ 120 (251)
T COG4700 68 QKLDPERHLREATEELAIAPTVQN---RYRLANALAELGRYHEAVPHYQQALSGIF------------------------ 120 (251)
T ss_pred HhcChhHHHHHHHHHHhhchhHHH---HHHHHHHHHHhhhhhhhHHHHHHHhcccc------------------------
Confidence 333333343334444555555211 23477888899999999999999987532
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch--h-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 119 RQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN--K-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 119 ~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~--~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
-+++..+..++.+....+++.+|...+++..+.+|..- + ...+|.+|..+|++.+|...++.++..
T Consensus 121 -A~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 121 -AHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred -CCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHh
Confidence 13567889999999999999999999999999999754 4 677899999999999999999999996
No 182
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.27 E-value=1.7e-05 Score=64.72 Aligned_cols=105 Identities=22% Similarity=0.145 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchh---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcch
Q 024858 28 SALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQS---QESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPT 104 (261)
Q Consensus 28 ~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~---~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~ 104 (261)
..+..-|.-+...|.|++|..-|..++.++|.-+ ..-++.+-+.+..+++.++.||..+-+++++.|
T Consensus 96 d~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~p---------- 165 (271)
T KOG4234|consen 96 DSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNP---------- 165 (271)
T ss_pred HHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCc----------
Confidence 4466689999999999999999999999999621 122334456778999999999999999999864
Q ss_pred HHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh
Q 024858 105 KTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK 158 (261)
Q Consensus 105 ~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~ 158 (261)
....++...+.+|.++..|++|+.-|++.++.+|....
T Consensus 166 ----------------ty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~e 203 (271)
T KOG4234|consen 166 ----------------TYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRRE 203 (271)
T ss_pred ----------------hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHH
Confidence 23457778899999999999999999999999998754
No 183
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.26 E-value=4.2e-05 Score=58.28 Aligned_cols=88 Identities=19% Similarity=0.163 Sum_probs=73.4
Q ss_pred hcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCch--hHHHHHHHHHHHHHHcCCHHHH
Q 024858 5 VQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ--SQESLDNVLIDLYKKCGKVEEQ 82 (261)
Q Consensus 5 ~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~--~~~~~~~~L~~ly~~~g~~~eA 82 (261)
..|+++.|++.|.++|.+-|..++++++-+..+.-+|+.++|.+-+++++.+..+. .....+.--|.+|..+|+.+.|
T Consensus 55 E~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~A 134 (175)
T KOG4555|consen 55 EAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAA 134 (175)
T ss_pred hccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHH
Confidence 45899999999999999999999999999999999999999999999999876542 1122334457789999999999
Q ss_pred HHHHHHHHHh
Q 024858 83 IEMLKRKLRL 92 (261)
Q Consensus 83 ~~~~~~al~l 92 (261)
-.-|+.+-++
T Consensus 135 R~DFe~AA~L 144 (175)
T KOG4555|consen 135 RADFEAAAQL 144 (175)
T ss_pred HHhHHHHHHh
Confidence 9999988776
No 184
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=98.22 E-value=9.7e-05 Score=68.96 Aligned_cols=155 Identities=20% Similarity=0.204 Sum_probs=116.8
Q ss_pred cCCHHHHHHHHHHHHHcCCChHHHHHHHHHHH----------H--HcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHH
Q 024858 6 QKDPEAAIVLFWKAINAGDRVDSALKDMAVVM----------K--QLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLY 73 (261)
Q Consensus 6 ~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~----------~--~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly 73 (261)
.||-+.++.+++++.+ .++.-..+..|..+. . .....++|.+++....+..|+.+ .+...-|.++
T Consensus 201 ~gdR~~GL~~L~~~~~-~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~--lfl~~~gR~~ 277 (468)
T PF10300_consen 201 SGDRELGLRLLWEASK-SENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSA--LFLFFEGRLE 277 (468)
T ss_pred CCcHHHHHHHHHHHhc-cCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcH--HHHHHHHHHH
Confidence 5888999999999987 444333333222111 1 34567889999999999999953 3455689999
Q ss_pred HHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 024858 74 KKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMID 153 (261)
Q Consensus 74 ~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~ 153 (261)
...|+.++|++.|++++.... .-+.+ ..-.++.+|+++.-+++|++|..+|.+.++.+
T Consensus 278 ~~~g~~~~Ai~~~~~a~~~q~---------------~~~Ql-------~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s 335 (468)
T PF10300_consen 278 RLKGNLEEAIESFERAIESQS---------------EWKQL-------HHLCYFELAWCHMFQHDWEEAAEYFLRLLKES 335 (468)
T ss_pred HHhcCHHHHHHHHHHhccchh---------------hHHhH-------HHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc
Confidence 999999999999999886321 01111 12367889999999999999999999999987
Q ss_pred CCchh--hhhHHHHHHHcCCH-------HHHHHHHHHHHhC
Q 024858 154 PDANK--ACNLGLCLIKRTRY-------NEARSVLEDVLYG 185 (261)
Q Consensus 154 P~~~~--~~~L~~~l~~~g~~-------~eA~~~~~~~l~~ 185 (261)
.-+.. .+..|.|+...|+. ++|...++++-..
T Consensus 336 ~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 336 KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 77665 55779999999999 8888888876664
No 185
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.20 E-value=4e-05 Score=74.88 Aligned_cols=180 Identities=14% Similarity=0.050 Sum_probs=132.4
Q ss_pred hhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCC-cHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH---cCCH
Q 024858 4 LVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDR-SEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKK---CGKV 79 (261)
Q Consensus 4 ~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~-~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~---~g~~ 79 (261)
++.+++++|++-..++++.+|++-.++..||..+...|. .++|.++|-.+.+++|++ ..++--|+++|.+ ...+
T Consensus 13 l~nk~YeealEqskkvLk~dpdNYnA~vFLGvAl~sl~q~le~A~ehYv~AaKldpdn--lLAWkGL~nLye~~~dIl~l 90 (1238)
T KOG1127|consen 13 LRNKEYEEALEQSKKVLKEDPDNYNAQVFLGVALWSLGQDLEKAAEHYVLAAKLDPDN--LLAWKGLGNLYERYNDILDL 90 (1238)
T ss_pred HhhccHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhccCCHHHHHHHHHHHHhcChhh--hHHHHHHHHHHHccchhhhh
Confidence 678999999999999999999999999999999999999 999999999999999994 3445558888876 5568
Q ss_pred HHHHHHHHHHHHhhcchhhh-----c---CcchHH-------Hhhchhh-----hhhhcCCCcHHHHHHHHHHHHHcCCH
Q 024858 80 EEQIEMLKRKLRLIYQGEAF-----N---GKPTKT-------ARSHGKK-----FQVSVRQETSRLLGNLAWAYMQKTNF 139 (261)
Q Consensus 80 ~eA~~~~~~al~l~~~~~~~-----~---~~~~~~-------~~~~~~~-----~~~~l~p~~~~~~~~Lg~~~~~~g~~ 139 (261)
+++-.+|.+++.+.+..+.. . +..... ++.-++. ...+.+|.-..++..|+.+...+..+
T Consensus 91 d~~~~~yq~~~l~le~q~~nk~~~lcKk~~d~~~~fk~hll~a~eigei~~trq~~se~N~~k~~a~~rl~Qi~l~~~~w 170 (1238)
T KOG1127|consen 91 DRAAKCYQRAVLILENQSKNKGEALCKKFDDQYYQFKKHLLVAKEIGEIAVTRQDASEKNPKKFWAFCRLGQIQLHQKKW 170 (1238)
T ss_pred hHhHHHHHHHHHhhhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHhchHhhhhhCHHHHHhhCchHHHHhhhhhH
Confidence 99999999998876532210 0 000000 0000110 11233444556777889999888899
Q ss_pred HHHHHHHHHHHhhCCCchh-hh-----hHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 140 MAAEVVYQKAQMIDPDANK-AC-----NLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 140 ~eA~~~~~~al~~~P~~~~-~~-----~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
+.+-.....++--.|.+.. +- ..+..|...|.+-.+...|.+.+..
T Consensus 171 ei~k~S~q~~lynq~~n~~l~D~irse~e~~ly~~~~m~l~~kkh~~~rik~ 222 (1238)
T KOG1127|consen 171 EIAKQSLQHALYNQPTNSDLWDKIRSEAEGLLYQRLGMFLAAKKHYGRRIKL 222 (1238)
T ss_pred HHHhcCHHHHHhcchhhhcchhhcchhHHHHHHHHhhhhHhhhhhHHHHHHH
Confidence 9999888888888887664 43 5677777777777777777665553
No 186
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=98.16 E-value=0.00014 Score=66.60 Aligned_cols=140 Identities=17% Similarity=0.126 Sum_probs=75.7
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchh
Q 024858 33 MAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGK 112 (261)
Q Consensus 33 Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~ 112 (261)
||++..++|+.+|||+.++.+++.+|......+..+|...|...++|.++..++.+-=++.
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~------------------- 325 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDIS------------------- 325 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcccc-------------------
Confidence 6666666666666666666666666542233445556666666666666665555521111
Q ss_pred hhhhhcCCCcHHHHHHHHHHHHH-------------cC---CHHHHHHHHHHHHhhCCCchh-hhh---H---HHHHHHc
Q 024858 113 KFQVSVRQETSRLLGNLAWAYMQ-------------KT---NFMAAEVVYQKAQMIDPDANK-ACN---L---GLCLIKR 169 (261)
Q Consensus 113 ~~~~~l~p~~~~~~~~Lg~~~~~-------------~g---~~~eA~~~~~~al~~~P~~~~-~~~---L---~~~l~~~ 169 (261)
.|+.+.+.++-+..-.+ .| --..|.+..++|++.+|.-+. ... | -.-+.+.
T Consensus 326 ------lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~K~LilPPehilkr 399 (539)
T PF04184_consen 326 ------LPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEMKSLILPPEHILKR 399 (539)
T ss_pred ------CCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhccCCCCCChHHhcCC
Confidence 12223333332222211 11 123477899999999998886 321 1 2234555
Q ss_pred CCHHHHHHHHHHHHhCCCCCCcchhhHHHHHHHHHH
Q 024858 170 TRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELLLE 205 (261)
Q Consensus 170 g~~~eA~~~~~~~l~~~~~~~~~~~~~~~a~~~l~~ 205 (261)
|+ .||+.+-.--+. +.++.+.|.+.|..
T Consensus 400 GD-SEAiaYAf~hL~-------hWk~veGAL~lL~~ 427 (539)
T PF04184_consen 400 GD-SEAIAYAFFHLQ-------HWKRVEGALNLLHC 427 (539)
T ss_pred Cc-HHHHHHHHHHHH-------HHhcCHhHHHHHHH
Confidence 65 888877766555 34444445555543
No 187
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.15 E-value=6.9e-05 Score=69.64 Aligned_cols=138 Identities=18% Similarity=0.211 Sum_probs=97.7
Q ss_pred hcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc---------------------------C
Q 024858 5 VQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGL---------------------------C 57 (261)
Q Consensus 5 ~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~---------------------------~ 57 (261)
..+..++|+..+. ..++....+++.-|.++..+|+|++|.+.|+..++- .
T Consensus 91 rlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v 167 (652)
T KOG2376|consen 91 RLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSV 167 (652)
T ss_pred HcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhc
Confidence 4566777777776 456666778888999999999999999998876322 2
Q ss_pred C---chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHH
Q 024858 58 S---KQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYM 134 (261)
Q Consensus 58 P---~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~ 134 (261)
| .+.+. +.++.+-++...|+|.+|++.+++++++.-. .+. .++.-...+.-+...+...|+.++.
T Consensus 168 ~~v~e~sye-l~yN~Ac~~i~~gky~qA~elL~kA~~~~~e--~l~---------~~d~~eEeie~el~~IrvQlayVlQ 235 (652)
T KOG2376|consen 168 PEVPEDSYE-LLYNTACILIENGKYNQAIELLEKALRICRE--KLE---------DEDTNEEEIEEELNPIRVQLAYVLQ 235 (652)
T ss_pred cCCCcchHH-HHHHHHHHHHhcccHHHHHHHHHHHHHHHHH--hhc---------ccccchhhHHHHHHHHHHHHHHHHH
Confidence 2 22233 3344788889999999999999999887310 000 0000000111122357889999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCch
Q 024858 135 QKTNFMAAEVVYQKAQMIDPDAN 157 (261)
Q Consensus 135 ~~g~~~eA~~~~~~al~~~P~~~ 157 (261)
.+|+..||...|...+..+|-+.
T Consensus 236 ~~Gqt~ea~~iy~~~i~~~~~D~ 258 (652)
T KOG2376|consen 236 LQGQTAEASSIYVDIIKRNPADE 258 (652)
T ss_pred HhcchHHHHHHHHHHHHhcCCCc
Confidence 99999999999999999998665
No 188
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.14 E-value=0.00011 Score=56.00 Aligned_cols=101 Identities=19% Similarity=0.150 Sum_probs=54.2
Q ss_pred HHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhch
Q 024858 32 DMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHG 111 (261)
Q Consensus 32 ~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~ 111 (261)
.-|+.+...|+.++|++.|.+++.+.|. ..+.+|+-+..|.-+|+.++|++-+++++++.-+ .++.
T Consensus 48 l~~valaE~g~Ld~AlE~F~qal~l~P~--raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~-------~trt----- 113 (175)
T KOG4555|consen 48 LKAIALAEAGDLDGALELFGQALCLAPE--RASAYNNRAQALRLQGDDEEALDDLNKALELAGD-------QTRT----- 113 (175)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhccc--chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCc-------cchH-----
Confidence 3455556666666666666666666665 2334555555666666666666666666665210 0000
Q ss_pred hhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 024858 112 KKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDA 156 (261)
Q Consensus 112 ~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~ 156 (261)
--.++...|.+|..+|+-+.|..-|..|-++....
T Consensus 114 ----------acqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~F 148 (175)
T KOG4555|consen 114 ----------ACQAFVQRGLLYRLLGNDDAARADFEAAAQLGSKF 148 (175)
T ss_pred ----------HHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCHH
Confidence 01244555666666666666666666655554443
No 189
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=98.11 E-value=0.00011 Score=57.20 Aligned_cols=108 Identities=25% Similarity=0.277 Sum_probs=73.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhcchhhhcCcch-HHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 024858 72 LYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPT-KTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQ 150 (261)
Q Consensus 72 ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~-~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al 150 (261)
.....|+.+.+++.+++++.+ ..|..+.+... .-.......+ ....-.++..++..+...|++++|+..+++++
T Consensus 15 ~~~~~~~~~~~~~~~~~al~l-y~G~~l~~~~~~~W~~~~r~~l----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l 89 (146)
T PF03704_consen 15 AAARAGDPEEAIELLEEALAL-YRGDFLPDLDDEEWVEPERERL----RELYLDALERLAEALLEAGDYEEALRLLQRAL 89 (146)
T ss_dssp HHHHTT-HHHHHHHHHHHHTT---SSTTGGGTTSTTHHHHHHHH----HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHH-hCCCCCCCCCccHHHHHHHHHH----HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 335678888888888888887 33332221000 0000000000 01123577889999999999999999999999
Q ss_pred hhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHh
Q 024858 151 MIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLY 184 (261)
Q Consensus 151 ~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~ 184 (261)
..+|.+.. +..|-.+|..+|+..+|+++|++...
T Consensus 90 ~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 90 ALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred hcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 99999999 89999999999999999999998765
No 190
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.08 E-value=0.00078 Score=57.29 Aligned_cols=154 Identities=18% Similarity=0.201 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHh
Q 024858 29 ALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTAR 108 (261)
Q Consensus 29 al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~ 108 (261)
+...++..+..-++.++-+.-..+.+...-...+..+...-+.+|..-|++++|.....+...+.- .+.+.. -..+
T Consensus 74 Avr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~--~Al~Vq--I~lk 149 (299)
T KOG3081|consen 74 AVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLEA--AALNVQ--ILLK 149 (299)
T ss_pred HHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHHH--HHHHHH--HHHH
Confidence 444555555555555555544443333222222333455567899999999999999888554421 111100 0000
Q ss_pred hch-----hhhhhhcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHH
Q 024858 109 SHG-----KKFQVSVRQETSRLLGNLAWAYMQ----KTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSV 178 (261)
Q Consensus 109 ~~~-----~~~~~~l~p~~~~~~~~Lg~~~~~----~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~ 178 (261)
.|. +.+.....-+...++..|+.+|.. .+.+.+|.-+|++.-+--|..+. ....+.|.+.+||++||..+
T Consensus 150 ~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~l 229 (299)
T KOG3081|consen 150 MHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESL 229 (299)
T ss_pred HHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHH
Confidence 111 111112222344566778777743 46789999999998885555555 88999999999999999999
Q ss_pred HHHHHhCC
Q 024858 179 LEDVLYGR 186 (261)
Q Consensus 179 ~~~~l~~~ 186 (261)
++.+|...
T Consensus 230 L~eaL~kd 237 (299)
T KOG3081|consen 230 LEEALDKD 237 (299)
T ss_pred HHHHHhcc
Confidence 99999973
No 191
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.05 E-value=2.6e-05 Score=68.40 Aligned_cols=101 Identities=14% Similarity=0.042 Sum_probs=86.0
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhh
Q 024858 30 LKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARS 109 (261)
Q Consensus 30 l~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~ 109 (261)
+..-|.-|..+|+|+|||.+|.+.+.++|.++. +..+-+..|.++.+|.-|+.-+..++.++. .
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV--~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~-----------~--- 163 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPV--YHINRALAYLKQKSFAQAEEDCEAAIALDK-----------L--- 163 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCcc--chhhHHHHHHHHHHHHHHHHhHHHHHHhhH-----------H---
Confidence 566799999999999999999999999997543 344467789999999999999999999842 0
Q ss_pred chhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh
Q 024858 110 HGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK 158 (261)
Q Consensus 110 ~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~ 158 (261)
...++...|.+-..+|+.+||-+-|+.+|++.|++..
T Consensus 164 ------------Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~E 200 (536)
T KOG4648|consen 164 ------------YVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIE 200 (536)
T ss_pred ------------HHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHH
Confidence 1247788899999999999999999999999999865
No 192
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.04 E-value=2.2e-05 Score=70.27 Aligned_cols=158 Identities=16% Similarity=0.114 Sum_probs=116.1
Q ss_pred CHHHHHHHHHHHHHcCCC------hHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcC---Cc-hhHHHHHHHHHHHHHHcC
Q 024858 8 DPEAAIVLFWKAINAGDR------VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLC---SK-QSQESLDNVLIDLYKKCG 77 (261)
Q Consensus 8 ~~~~A~~~~~~al~~~p~------~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~---P~-~~~~~~~~~L~~ly~~~g 77 (261)
.++.|..+|..-+++-.. ...++-+||..|.-+|+|+.||..-+.-+.+. .+ -+....+.+||++|.-.|
T Consensus 170 al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg 249 (639)
T KOG1130|consen 170 ALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLG 249 (639)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhc
Confidence 356677777776654333 23456679999999999999998766543332 22 233455667999999999
Q ss_pred CHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch
Q 024858 78 KVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN 157 (261)
Q Consensus 78 ~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~ 157 (261)
+++.|++.|++.+.+.- ..+... .-+..-+.||..|.-..++.+||.++.+-|.+.-.-.
T Consensus 250 ~fe~A~ehYK~tl~LAi--------------elg~r~------vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~ 309 (639)
T KOG1130|consen 250 NFELAIEHYKLTLNLAI--------------ELGNRT------VEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELE 309 (639)
T ss_pred ccHhHHHHHHHHHHHHH--------------Hhcchh------HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988731 111110 0134567899999999999999999999887754221
Q ss_pred ------h-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 158 ------K-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 158 ------~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
. ...||+++...|..+.|+.+.+..+..
T Consensus 310 DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 310 DRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 2 357999999999999999999988875
No 193
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.01 E-value=0.00016 Score=61.36 Aligned_cols=136 Identities=18% Similarity=0.233 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHh
Q 024858 29 ALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTAR 108 (261)
Q Consensus 29 al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~ 108 (261)
..+.+..+++..|.|.-...+++++++.+|.. ...+...|+.+-.+.|+.+-|..+++++-+... ..++
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~-~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~---kL~~------- 247 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQ-EPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQ---KLDG------- 247 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcc-cHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHh---hhhc-------
Confidence 34457888899999999999999999999753 223556689999999999999999997654311 0010
Q ss_pred hchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 109 SHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 109 ~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
.+ ..--++.|.+.+|.-++++.+|...|.+.+..||.++. .+|-+.|++=.|+..+|++..+.++..
T Consensus 248 ---~q-------~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 248 ---LQ-------GKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred ---cc-------hhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 01 11237889999999999999999999999999999999 788999999999999999999999997
No 194
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.98 E-value=3.7e-05 Score=61.69 Aligned_cols=85 Identities=14% Similarity=0.016 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcC----------CcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCC
Q 024858 9 PEAAIVLFWKAINAGDRVDSALKDMAVVMKQLD----------RSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGK 78 (261)
Q Consensus 9 ~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g----------~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~ 78 (261)
++.|.+.++.....+|.+++++.+-|.+|..+. -+++||.-++.++.++|+.. .....+|+.|..++.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~h--dAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKH--DALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-H--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchH--HHHHHHHHHHHHHHh
Confidence 677889999999999999999999998886553 34567777888999999842 233446777765544
Q ss_pred -----------HHHHHHHHHHHHHhhcc
Q 024858 79 -----------VEEQIEMLKRKLRLIYQ 95 (261)
Q Consensus 79 -----------~~eA~~~~~~al~l~~~ 95 (261)
|++|..+|++++...|.
T Consensus 85 l~~d~~~A~~~F~kA~~~FqkAv~~~P~ 112 (186)
T PF06552_consen 85 LTPDTAEAEEYFEKATEYFQKAVDEDPN 112 (186)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHHH-TT
T ss_pred hcCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 56666666666666543
No 195
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.98 E-value=0.0024 Score=60.32 Aligned_cols=199 Identities=13% Similarity=0.172 Sum_probs=144.1
Q ss_pred chhhcCCHHHHHHHHHHHHH-cCCCh-----HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCc--hhHHHHHHHHHHHH
Q 024858 2 VQLVQKDPEAAIVLFWKAIN-AGDRV-----DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK--QSQESLDNVLIDLY 73 (261)
Q Consensus 2 ~~~~~~~~~~A~~~~~~al~-~~p~~-----~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~--~~~~~~~~~L~~ly 73 (261)
|.+.+|+..+-+.-|..|++ .+|.. ...|..+|.+|-..|+.+.|..+++++.+..-. +.-...+..-|..=
T Consensus 356 V~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemE 435 (835)
T KOG2047|consen 356 VKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEME 435 (835)
T ss_pred hhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHH
Confidence 55778888888888888885 66653 455778899999999999999999999886432 11123344456666
Q ss_pred HHcCCHHHHHHHHHHHHHhhcchhh---hcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 024858 74 KKCGKVEEQIEMLKRKLRLIYQGEA---FNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQ 150 (261)
Q Consensus 74 ~~~g~~~eA~~~~~~al~l~~~~~~---~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al 150 (261)
.+..+++.|..+.++++.. |.+.. +.+...-..+-| ....+|..++......|-++.-...|.+.+
T Consensus 436 lrh~~~~~Al~lm~~A~~v-P~~~~~~~yd~~~pvQ~rlh----------rSlkiWs~y~DleEs~gtfestk~vYdrii 504 (835)
T KOG2047|consen 436 LRHENFEAALKLMRRATHV-PTNPELEYYDNSEPVQARLH----------RSLKIWSMYADLEESLGTFESTKAVYDRII 504 (835)
T ss_pred HhhhhHHHHHHHHHhhhcC-CCchhhhhhcCCCcHHHHHH----------HhHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 7888899999999988876 43311 222111111111 235689999999999999999999999999
Q ss_pred hhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCc--------------chhhHHHHHHHHHHHHhcCC
Q 024858 151 MIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG-RIPGCE--------------DGRTRKRAEELLLELESKQP 211 (261)
Q Consensus 151 ~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~-~~~~~~--------------~~~~~~~a~~~l~~l~~~~~ 211 (261)
.+.--.+. ..|.|..+.+..-++++-++|++-+.. .+|+.- .....++++.++..+...-|
T Consensus 505 dLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cp 581 (835)
T KOG2047|consen 505 DLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCP 581 (835)
T ss_pred HHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Confidence 99998898 899999999999999999999998885 233321 12445677777776654333
No 196
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=1.7e-05 Score=66.26 Aligned_cols=90 Identities=19% Similarity=0.199 Sum_probs=79.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 024858 70 IDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKA 149 (261)
Q Consensus 70 ~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~a 149 (261)
|+-|..-.+|++||..|-+++.++| ..+..+.|-+.+|++..+++....--++|
T Consensus 17 gnk~f~~k~y~~ai~~y~raI~~nP--------------------------~~~~Y~tnralchlk~~~~~~v~~dcrra 70 (284)
T KOG4642|consen 17 GNKCFIPKRYDDAIDCYSRAICINP--------------------------TVASYYTNRALCHLKLKHWEPVEEDCRRA 70 (284)
T ss_pred cccccchhhhchHHHHHHHHHhcCC--------------------------CcchhhhhHHHHHHHhhhhhhhhhhHHHH
Confidence 3445667899999999999998864 44567889999999999999999999999
Q ss_pred HhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 150 QMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 150 l~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
++++|+... ++.||.++.....|++|+.++.++...
T Consensus 71 lql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 71 LQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSL 107 (284)
T ss_pred HhcChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 999999998 999999999999999999999999653
No 197
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=97.96 E-value=1.7e-05 Score=69.56 Aligned_cols=179 Identities=12% Similarity=-0.032 Sum_probs=126.2
Q ss_pred hhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHH
Q 024858 4 LVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQI 83 (261)
Q Consensus 4 ~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~ 83 (261)
+.+|.+++|+.+|.+++..+|.++-.+.+-+..|..++++..|..-++.++.++-. +.-.+.--+..-...|...||.
T Consensus 108 FKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~--Y~KAYSRR~~AR~~Lg~~~EAK 185 (536)
T KOG4648|consen 108 FKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL--YVKAYSRRMQARESLGNNMEAK 185 (536)
T ss_pred hhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH--HHHHHHHHHHHHHHHhhHHHHH
Confidence 46799999999999999999999999999999999999999999999999998765 3333333445556789999999
Q ss_pred HHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCC-------cHHHH--HHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 024858 84 EMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQE-------TSRLL--GNLAWAYMQKTNFMAAEVVYQKAQMIDP 154 (261)
Q Consensus 84 ~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~-------~~~~~--~~Lg~~~~~~g~~~eA~~~~~~al~~~P 154 (261)
+-++.+|++.|...-+.-....+.....+.+...-.|. ...++ -.-|..+...|.++-++..|.+-...+-
T Consensus 186 kD~E~vL~LEP~~~ELkK~~a~i~Sl~E~~I~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~~~i~~~~~~~A~~~ 265 (536)
T KOG4648|consen 186 KDCETVLALEPKNIELKKSLARINSLRERKIATKSTPGFTPARQGMIQILPIKKPGYKFSKKAMRSVPVVDVVSPRATID 265 (536)
T ss_pred HhHHHHHhhCcccHHHHHHHHHhcchHhhhHHhhcCCCCCccccchhhhccccCcchhhhhhhccccceeEeeccccccC
Confidence 99999999966422111000000000000010111111 11111 2346677888999999999988887777
Q ss_pred Cchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 155 DANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 155 ~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
++.. ..+ +..+.+..++++++.-.-++...
T Consensus 266 ~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~ 296 (536)
T KOG4648|consen 266 DSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNP 296 (536)
T ss_pred ccccCccc-HHHHHHHhhcchhHHHHHHhcCC
Confidence 7776 556 88899999999999888777664
No 198
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.94 E-value=0.00047 Score=58.62 Aligned_cols=157 Identities=14% Similarity=0.058 Sum_probs=116.5
Q ss_pred hhcCCHHHHHHHHHHHHHcC-CChHHHHHHHHHHHHHcCCcHHHHHHHHHHHh----cCCchhHHHHHHHHHHHHHHcCC
Q 024858 4 LVQKDPEAAIVLFWKAINAG-DRVDSALKDMAVVMKQLDRSEEAIEAIKSFRG----LCSKQSQESLDNVLIDLYKKCGK 78 (261)
Q Consensus 4 ~~~~~~~~A~~~~~~al~~~-p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~----~~P~~~~~~~~~~L~~ly~~~g~ 78 (261)
+--|.+.-...++.++++.+ |..+.....||.+-.|.|+.+-|..+++.+-+ ++.......++.+.+.+|.-+++
T Consensus 188 lG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn 267 (366)
T KOG2796|consen 188 LGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNN 267 (366)
T ss_pred hcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccc
Confidence 34566777788999999877 56677778899999999999999999985543 33323344566667889999999
Q ss_pred HHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch-
Q 024858 79 VEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN- 157 (261)
Q Consensus 79 ~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~- 157 (261)
+.+|...|.+.+..++ .++.+.+|-+.|++-.|+..+|++..+.++.+.|...
T Consensus 268 ~a~a~r~~~~i~~~D~--------------------------~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l 321 (366)
T KOG2796|consen 268 FAEAHRFFTEILRMDP--------------------------RNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYL 321 (366)
T ss_pred hHHHHHHHhhccccCC--------------------------CchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccch
Confidence 9999999999887643 3556778999999999999999999999999999865
Q ss_pred --h-hhhHHHHHH-HcCCHHHHHHHHHHHHhCC
Q 024858 158 --K-ACNLGLCLI-KRTRYNEARSVLEDVLYGR 186 (261)
Q Consensus 158 --~-~~~L~~~l~-~~g~~~eA~~~~~~~l~~~ 186 (261)
. .+||...|. .--+.-+-......|+...
T Consensus 322 ~es~~~nL~tmyEL~Ys~~~~~k~~l~~~ia~~ 354 (366)
T KOG2796|consen 322 HESVLFNLTTMYELEYSRSMQKKQALLEAVAGK 354 (366)
T ss_pred hhhHHHHHHHHHHHHhhhhhhHHHHHHHHHhcc
Confidence 2 456655432 1123333334455566653
No 199
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.94 E-value=1.7e-05 Score=45.74 Aligned_cols=33 Identities=27% Similarity=0.327 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 024858 124 RLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDA 156 (261)
Q Consensus 124 ~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~ 156 (261)
+++..+|.+|..+|++++|+..|+++++++|++
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 478999999999999999999999999999964
No 200
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.94 E-value=0.0011 Score=55.41 Aligned_cols=142 Identities=19% Similarity=0.183 Sum_probs=87.6
Q ss_pred CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHh----cCCc-hhHHHHHHHHHHHHHHcCCHHHH
Q 024858 8 DPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRG----LCSK-QSQESLDNVLIDLYKKCGKVEEQ 82 (261)
Q Consensus 8 ~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~----~~P~-~~~~~~~~~L~~ly~~~g~~~eA 82 (261)
.+++|..+|.+| |.+|.-.+.+..|-.+|.++.. .+.. ++ .+-+...+++| +.++..+|
T Consensus 29 k~eeAadl~~~A--------------an~yklaK~w~~AG~aflkaA~~h~k~~skhDa-at~YveA~~cy-kk~~~~eA 92 (288)
T KOG1586|consen 29 KYEEAAELYERA--------------ANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDA-ATTYVEAANCY-KKVDPEEA 92 (288)
T ss_pred chHHHHHHHHHH--------------HHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhH-HHHHHHHHHHh-hccChHHH
Confidence 456666666665 3344444455555555444422 2222 11 11222234444 45599999
Q ss_pred HHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCch----
Q 024858 83 IEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQK-TNFMAAEVVYQKAQMIDPDAN---- 157 (261)
Q Consensus 83 ~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~-g~~~eA~~~~~~al~~~P~~~---- 157 (261)
+.++++++++.. ..+ .|.. -+.-+..+|.+|..- .+++.|+.+|++|-+......
T Consensus 93 v~cL~~aieIyt----------~~G-----rf~~-----aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ss 152 (288)
T KOG1586|consen 93 VNCLEKAIEIYT----------DMG-----RFTM-----AAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSS 152 (288)
T ss_pred HHHHHHHHHHHH----------hhh-----HHHH-----HHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhh
Confidence 999999999842 111 1100 123466799999665 999999999999988654332
Q ss_pred --h-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 158 --K-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 158 --~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
. ....+..-...|+|.+|+.+|+++...
T Consensus 153 ANKC~lKvA~yaa~leqY~~Ai~iyeqva~~ 183 (288)
T KOG1586|consen 153 ANKCLLKVAQYAAQLEQYSKAIDIYEQVARS 183 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 233466667779999999999998875
No 201
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.92 E-value=0.0023 Score=54.25 Aligned_cols=137 Identities=19% Similarity=0.174 Sum_probs=108.4
Q ss_pred hHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchh-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcch
Q 024858 26 VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQS-QESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPT 104 (261)
Q Consensus 26 ~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~-~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~ 104 (261)
.++-|.+-|....+.|++++|+..|+++...+|..+ .......++-.+.+.|++++|+...++-+++.|..
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~-------- 104 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTH-------- 104 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC--------
Confidence 456688899999999999999999999999999632 23345668889999999999999999999986521
Q ss_pred HHHhhchhhhhhhcCCCcHHHHHHHHHHHH--------HcCCHHHHHHHHHHHHhhCCCchh------------------
Q 024858 105 KTARSHGKKFQVSVRQETSRLLGNLAWAYM--------QKTNFMAAEVVYQKAQMIDPDANK------------------ 158 (261)
Q Consensus 105 ~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~--------~~g~~~eA~~~~~~al~~~P~~~~------------------ 158 (261)
|+-+-+++..|.++. .+.-..+|+..++..+...|++.-
T Consensus 105 ---------------~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~ 169 (254)
T COG4105 105 ---------------PNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGH 169 (254)
T ss_pred ---------------CChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHH
Confidence 223335555555553 344457899999999999998641
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 159 ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 159 ~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
-+.+|..|.+.|.+..|+.-++.++..
T Consensus 170 Em~IaryY~kr~~~~AA~nR~~~v~e~ 196 (254)
T COG4105 170 EMAIARYYLKRGAYVAAINRFEEVLEN 196 (254)
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence 135799999999999999999999997
No 202
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.89 E-value=0.002 Score=59.03 Aligned_cols=154 Identities=14% Similarity=0.055 Sum_probs=126.3
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCC----hHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCC
Q 024858 3 QLVQKDPEAAIVLFWKAINAGDR----VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGK 78 (261)
Q Consensus 3 ~~~~~~~~~A~~~~~~al~~~p~----~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~ 78 (261)
.+..+|.+.+...|+..|.+=|. .+..|..-|...+.+.+...|.+++-.++..+|.+- +....+.+=.+.+.
T Consensus 376 Ele~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~K---lFk~YIelElqL~e 452 (677)
T KOG1915|consen 376 ELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDK---LFKGYIELELQLRE 452 (677)
T ss_pred HHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchh---HHHHHHHHHHHHhh
Confidence 45678999999999999998886 567777788888999999999999999999999842 33334555678899
Q ss_pred HHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc-h
Q 024858 79 VEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDA-N 157 (261)
Q Consensus 79 ~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~-~ 157 (261)
+|..-.+|++-|+-. |++..+|...|..-..+|+.+.|...|.-|+....-+ +
T Consensus 453 fDRcRkLYEkfle~~--------------------------Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmp 506 (677)
T KOG1915|consen 453 FDRCRKLYEKFLEFS--------------------------PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMP 506 (677)
T ss_pred HHHHHHHHHHHHhcC--------------------------hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccH
Confidence 999999999988864 4556789999999999999999999999999865433 3
Q ss_pred h--hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 158 K--ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 158 ~--~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
. |-..-..-...|.++.|..+|++.|..
T Consensus 507 ellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 507 ELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred HHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 3 445566777889999999999999987
No 203
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.86 E-value=0.00037 Score=63.96 Aligned_cols=136 Identities=16% Similarity=0.151 Sum_probs=91.7
Q ss_pred cCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcC
Q 024858 40 LDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVR 119 (261)
Q Consensus 40 ~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~ 119 (261)
..+.+.-|++-++++.++|+ ......+|+. ....-..||+++|+++++.... ..++. .....++........
T Consensus 181 ERnp~aRIkaA~eALei~pd--CAdAYILLAE--EeA~Ti~Eae~l~rqAvkAgE~---~lg~s-~~~~~~g~~~e~~~~ 252 (539)
T PF04184_consen 181 ERNPQARIKAAKEALEINPD--CADAYILLAE--EEASTIVEAEELLRQAVKAGEA---SLGKS-QFLQHHGHFWEAWHR 252 (539)
T ss_pred cCCHHHHHHHHHHHHHhhhh--hhHHHhhccc--ccccCHHHHHHHHHHHHHHHHH---hhchh-hhhhcccchhhhhhc
Confidence 34556677888999999998 3345555652 2345589999999999987421 11100 000111111000000
Q ss_pred CC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc-h-h-hhhHHHHHHHcCCHHHHHHHHHHHH
Q 024858 120 QE---TSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDA-N-K-ACNLGLCLIKRTRYNEARSVLEDVL 183 (261)
Q Consensus 120 p~---~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~-~-~-~~~L~~~l~~~g~~~eA~~~~~~~l 183 (261)
.+ ..-+...||.|..++|+.+||++.|+..++..|.. . . +.||..+|..+++|.++..++.+--
T Consensus 253 Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 253 RDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred cccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 11 12355789999999999999999999999988853 3 4 7899999999999999998888743
No 204
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.85 E-value=0.00025 Score=62.62 Aligned_cols=157 Identities=18% Similarity=0.133 Sum_probs=109.3
Q ss_pred HHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhh
Q 024858 38 KQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVS 117 (261)
Q Consensus 38 ~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (261)
....+|.-||.+++-...++-.. ...+...++.+|...|+|++|...|.-+..-..
T Consensus 33 ls~rDytGAislLefk~~~~~EE-E~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~----------------------- 88 (557)
T KOG3785|consen 33 LSNRDYTGAISLLEFKLNLDREE-EDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDD----------------------- 88 (557)
T ss_pred HhcccchhHHHHHHHhhccchhh-hHHHHHHHHHHHHhhccHHHHHHHHHHHhccCC-----------------------
Confidence 34578999999998887766542 124555689999999999999999998766321
Q ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--------------hCC------------Cchh-hhhHHHHHHHcC
Q 024858 118 VRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQM--------------IDP------------DANK-ACNLGLCLIKRT 170 (261)
Q Consensus 118 l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~--------------~~P------------~~~~-~~~L~~~l~~~g 170 (261)
-+.+++.||+.++.-.|.|.||...-.++-+ ++. |... ...|+.+....-
T Consensus 89 ---~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~ 165 (557)
T KOG3785|consen 89 ---APAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRM 165 (557)
T ss_pred ---CCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHH
Confidence 1345788999999999999999887665422 110 1112 345667777778
Q ss_pred CHHHHHHHHHHHHhCCCCCC----------cchhhHHHHHHHHHHHHhcCCCCchhhhccc
Q 024858 171 RYNEARSVLEDVLYGRIPGC----------EDGRTRKRAEELLLELESKQPPPDLSDLLGL 221 (261)
Q Consensus 171 ~~~eA~~~~~~~l~~~~~~~----------~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~ 221 (261)
.|.||+.+|++++..++.-. -...-++...++++-...+.|++....++-.
T Consensus 166 HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLka 226 (557)
T KOG3785|consen 166 HYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKA 226 (557)
T ss_pred HHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHH
Confidence 99999999999999742100 0234455677788877777777666555443
No 205
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.83 E-value=0.0012 Score=53.67 Aligned_cols=116 Identities=19% Similarity=0.122 Sum_probs=83.4
Q ss_pred HHHHHHHHHHhcCCchhHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcH
Q 024858 45 EAIEAIKSFRGLCSKQSQES-LDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETS 123 (261)
Q Consensus 45 eAi~~~~~~~~~~P~~~~~~-~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~ 123 (261)
+.+...+++...+|...+.. ....++..+...|++++|+..++.++.. +.++ .+. +
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~-t~De---------------~lk-------~ 126 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ-TKDE---------------NLK-------A 126 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc-chhH---------------HHH-------H
Confidence 55555666666665532222 2355788899999999999999999875 2111 000 1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh--hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 124 RLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK--ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 124 ~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~--~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
-+-.+||.+..++|.+++|+..+.... +++... ...-|.++...|+.++|...|++++..
T Consensus 127 l~~lRLArvq~q~~k~D~AL~~L~t~~--~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 127 LAALRLARVQLQQKKADAALKTLDTIK--EESWAAIVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhccc--cccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 245689999999999999999887642 233333 234599999999999999999999996
No 206
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.78 E-value=4.6e-05 Score=46.94 Aligned_cols=42 Identities=17% Similarity=0.160 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHH
Q 024858 27 DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLI 70 (261)
Q Consensus 27 ~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~ 70 (261)
|.++..+|.+|..+|++++|++.|+++++.+|+++ .+...|+
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~--~a~~~La 42 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDP--EAWRALA 42 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH--HHHHHhh
Confidence 35788899999999999999999999999999854 3444454
No 207
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.77 E-value=0.00063 Score=66.09 Aligned_cols=138 Identities=17% Similarity=0.198 Sum_probs=103.0
Q ss_pred hcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHH
Q 024858 5 VQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIE 84 (261)
Q Consensus 5 ~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~ 84 (261)
-.+++.+|.....+.++..|+...+...-|.++.++|+.+||..+++..-...|++ ...+ -++-.+|..+|++++|..
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D-~~tL-q~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTD-DLTL-QFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCc-hHHH-HHHHHHHHHHhhhhHHHH
Confidence 35678899999999999999999999999999999999999998887776666663 3334 458899999999999999
Q ss_pred HHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh--hhhH
Q 024858 85 MLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK--ACNL 162 (261)
Q Consensus 85 ~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~--~~~L 162 (261)
+|++++..+| + .+.+..+=.+|.+-+.|.+=-++--+..+.-|.++. |.-+
T Consensus 99 ~Ye~~~~~~P--------------------------~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~ 151 (932)
T KOG2053|consen 99 LYERANQKYP--------------------------S-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVI 151 (932)
T ss_pred HHHHHHhhCC--------------------------c-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHH
Confidence 9999998765 2 234555555666666666544444444456777775 5555
Q ss_pred HHHHHHcCC
Q 024858 163 GLCLIKRTR 171 (261)
Q Consensus 163 ~~~l~~~g~ 171 (261)
...+.....
T Consensus 152 Slilqs~~~ 160 (932)
T KOG2053|consen 152 SLILQSIFS 160 (932)
T ss_pred HHHHHhccC
Confidence 555544433
No 208
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=0.00015 Score=60.62 Aligned_cols=86 Identities=21% Similarity=0.162 Sum_probs=78.4
Q ss_pred hcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHH
Q 024858 5 VQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIE 84 (261)
Q Consensus 5 ~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~ 84 (261)
..+.++.|+..|.+||..+|..+..+.+-+.++.+.++++.+..-.++++.+.|+. .-...+||........|++||.
T Consensus 22 ~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~--vk~h~flg~~~l~s~~~~eaI~ 99 (284)
T KOG4642|consen 22 IPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNL--VKAHYFLGQWLLQSKGYDEAIK 99 (284)
T ss_pred chhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHH--HHHHHHHHHHHHhhccccHHHH
Confidence 45679999999999999999999999999999999999999999999999999983 3456678888899999999999
Q ss_pred HHHHHHHh
Q 024858 85 MLKRKLRL 92 (261)
Q Consensus 85 ~~~~al~l 92 (261)
.+.++..+
T Consensus 100 ~Lqra~sl 107 (284)
T KOG4642|consen 100 VLQRAYSL 107 (284)
T ss_pred HHHHHHHH
Confidence 99999766
No 209
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.73 E-value=0.0018 Score=54.58 Aligned_cols=159 Identities=16% Similarity=0.186 Sum_probs=103.0
Q ss_pred hcCCHHHHHHHHHHHHHcCCChH------HHHHHHHHHHHHcCCcHHHHHHHHHHHhcC-----CchhHHHHHHHHHHHH
Q 024858 5 VQKDPEAAIVLFWKAINAGDRVD------SALKDMAVVMKQLDRSEEAIEAIKSFRGLC-----SKQSQESLDNVLIDLY 73 (261)
Q Consensus 5 ~~~~~~~A~~~~~~al~~~p~~~------~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~-----P~~~~~~~~~~L~~ly 73 (261)
..+++++|...+.+|++...++. .++-..+.+......+.|++.+|+++..+. |+-+...+.. -+.+
T Consensus 43 nAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleK-Aak~- 120 (308)
T KOG1585|consen 43 NAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEK-AAKA- 120 (308)
T ss_pred hhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHH-HHHH-
Confidence 34677788888888885444433 334457777888888899999988887654 3311111111 2222
Q ss_pred HHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 024858 74 KKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMID 153 (261)
Q Consensus 74 ~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~ 153 (261)
.+.-+.++|+++|++++.+-..+. +.+- --+.+...+.+|.+..+++||...+.+-..+.
T Consensus 121 lenv~Pd~AlqlYqralavve~~d----------r~~m----------a~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~ 180 (308)
T KOG1585|consen 121 LENVKPDDALQLYQRALAVVEEDD----------RDQM----------AFELYGKCSRVLVRLEKFTEAATAFLKEGVAA 180 (308)
T ss_pred hhcCCHHHHHHHHHHHHHHHhccc----------hHHH----------HHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHH
Confidence 566788899999999888742110 0000 12356778999999999999998888755432
Q ss_pred ------CCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 154 ------PDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 154 ------P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
|+.-. ......++.-..+|..|...|+..-+.
T Consensus 181 ~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qi 219 (308)
T KOG1585|consen 181 DKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQI 219 (308)
T ss_pred HHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcC
Confidence 22222 344556666677999999999986664
No 210
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=0.00055 Score=57.65 Aligned_cols=107 Identities=13% Similarity=0.057 Sum_probs=82.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhh-hhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 024858 70 IDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQ-VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQK 148 (261)
Q Consensus 70 ~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~-~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~ 148 (261)
|+=+.+.|+|+||+..|+.|+..-.. - ..+..+.... ++++.-....+.|...|+...|+|-|+++....
T Consensus 185 GN~lfk~~~ykEA~~~YreAi~~l~~-L--------~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~se 255 (329)
T KOG0545|consen 185 GNRLFKLGRYKEASSKYREAIICLRN-L--------QLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSE 255 (329)
T ss_pred hhhhhhhccHHHHHHHHHHHHHHHHH-H--------HhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHH
Confidence 44457899999999999999886210 0 0000000000 122222345788999999999999999999999
Q ss_pred HHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 149 AQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 149 al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
+|..+|+|.. ++.-|.+.....+..||..-+.++|..
T Consensus 256 iL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 256 ILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 9999999999 889999999999999999999999997
No 211
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.71 E-value=8.2e-05 Score=42.71 Aligned_cols=33 Identities=27% Similarity=0.159 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCc
Q 024858 27 DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK 59 (261)
Q Consensus 27 ~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~ 59 (261)
++++..+|.++..+|++++|++.+++++.++|+
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 356777788888888888888888888877776
No 212
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.70 E-value=0.0035 Score=63.72 Aligned_cols=146 Identities=12% Similarity=0.060 Sum_probs=95.4
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHh-cCCchhHH--HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 024858 13 IVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRG-LCSKQSQE--SLDNVLIDLYKKCGKVEEQIEMLKRK 89 (261)
Q Consensus 13 ~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~-~~P~~~~~--~~~~~L~~ly~~~g~~~eA~~~~~~a 89 (261)
.+-|.+.+..+|+..-.|-.--.-+++.++.++|.+..++++. +++..-.+ .++..+-++-..-|.-+.-.+.|++|
T Consensus 1444 aeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRA 1523 (1710)
T KOG1070|consen 1444 AEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERA 1523 (1710)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHH
Confidence 3456667777888777776655666788888888888888776 55542111 22222334444556566666777776
Q ss_pred HHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHH
Q 024858 90 LRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIK 168 (261)
Q Consensus 90 l~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~ 168 (261)
-+... .-.++..|..+|...+.+++|.++|+..++-.-+... |..+|..+++
T Consensus 1524 cqycd---------------------------~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~ 1576 (1710)
T KOG1070|consen 1524 CQYCD---------------------------AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLR 1576 (1710)
T ss_pred HHhcc---------------------------hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhc
Confidence 66532 1235667777777777777777777777776665555 7777777777
Q ss_pred cCCHHHHHHHHHHHHhC
Q 024858 169 RTRYNEARSVLEDVLYG 185 (261)
Q Consensus 169 ~g~~~eA~~~~~~~l~~ 185 (261)
+.+-++|..++.+++..
T Consensus 1577 ~ne~~aa~~lL~rAL~~ 1593 (1710)
T KOG1070|consen 1577 QNEAEAARELLKRALKS 1593 (1710)
T ss_pred ccHHHHHHHHHHHHHhh
Confidence 77777777777777775
No 213
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.69 E-value=9.1e-05 Score=42.69 Aligned_cols=32 Identities=25% Similarity=0.166 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCc
Q 024858 28 SALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK 59 (261)
Q Consensus 28 ~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~ 59 (261)
.++.++|.++..+|++++|+..|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46777777777777777777777777777775
No 214
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.69 E-value=0.00089 Score=52.12 Aligned_cols=86 Identities=23% Similarity=0.229 Sum_probs=67.6
Q ss_pred hcCCHHHHHHHHHHHHHcCCC----------------------hHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhH
Q 024858 5 VQKDPEAAIVLFWKAINAGDR----------------------VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQ 62 (261)
Q Consensus 5 ~~~~~~~A~~~~~~al~~~p~----------------------~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~ 62 (261)
..++.+.++..+++++.+-.+ ...++..++..+...|++++|+..+++++..+|- +
T Consensus 18 ~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~--~ 95 (146)
T PF03704_consen 18 RAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALDPY--D 95 (146)
T ss_dssp HTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT---
T ss_pred HCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC--C
Confidence 457888899999999963211 2344556888889999999999999999999998 4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 024858 63 ESLDNVLIDLYKKCGKVEEQIEMLKRKLRL 92 (261)
Q Consensus 63 ~~~~~~L~~ly~~~g~~~eA~~~~~~al~l 92 (261)
+.++..+..+|...|++.+|+..|++..+.
T Consensus 96 E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 96 EEAYRLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 567777899999999999999999998765
No 215
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=0.0028 Score=54.75 Aligned_cols=153 Identities=22% Similarity=0.121 Sum_probs=100.0
Q ss_pred hHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchH
Q 024858 26 VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTK 105 (261)
Q Consensus 26 ~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~ 105 (261)
-.+.-...+.-..+.|++.+|..++..++...|++. .+...++.+|...|+.++|..++...-.- ..+.
T Consensus 133 ~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~--~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~~~~-------- 201 (304)
T COG3118 133 EEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENS--EAKLLLAECLLAAGDVEAAQAILAALPLQ-AQDK-------- 201 (304)
T ss_pred HHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccc--hHHHHHHHHHHHcCChHHHHHHHHhCccc-chhh--------
Confidence 334445567778899999999999999999999853 35556899999999999999888773211 0000
Q ss_pred HHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHh
Q 024858 106 TARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLY 184 (261)
Q Consensus 106 ~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~ 184 (261)
+.++ ..+.. ..+.+.....+. ..+.+.+..+|++.. .+.|+..|...||.++|.+.+-.++.
T Consensus 202 --~~~~-----------l~a~i---~ll~qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 202 --AAHG-----------LQAQI---ELLEQAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred --HHHH-----------HHHHH---HHHHHHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 0000 00111 122233333322 234566778999998 99999999999999999999999888
Q ss_pred CCCCCCcchhhHHHHHHHHHHHH
Q 024858 185 GRIPGCEDGRTRKRAEELLLELE 207 (261)
Q Consensus 185 ~~~~~~~~~~~~~~a~~~l~~l~ 207 (261)
.+. +..+.....+..+++..++
T Consensus 265 ~d~-~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 265 RDR-GFEDGEARKTLLELFEAFG 286 (304)
T ss_pred hcc-cccCcHHHHHHHHHHHhcC
Confidence 631 2223333334555555554
No 216
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.65 E-value=0.0047 Score=62.86 Aligned_cols=176 Identities=16% Similarity=0.130 Sum_probs=96.6
Q ss_pred hhhcCCHHHHHHHHHHHHH-cCCChH-------HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Q 024858 3 QLVQKDPEAAIVLFWKAIN-AGDRVD-------SALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYK 74 (261)
Q Consensus 3 ~~~~~~~~~A~~~~~~al~-~~p~~~-------~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~ 74 (261)
+|..++.++|....++|+. +++.-. -|+.||-+.| |.-+.-.+.|+++.+.+.. . ..+..|..+|.
T Consensus 1468 ~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~y---G~eesl~kVFeRAcqycd~--~-~V~~~L~~iy~ 1541 (1710)
T KOG1070|consen 1468 HLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAY---GTEESLKKVFERACQYCDA--Y-TVHLKLLGIYE 1541 (1710)
T ss_pred HhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhh---CcHHHHHHHHHHHHHhcch--H-HHHHHHHHHHH
Confidence 4667889999999999996 655432 2333333333 4445556778888877643 2 35566788889
Q ss_pred HcCCHHHHHHHHHHHHHhhcchh--hh-------cCcchHHHhhchhhhhhhcCC--CcHHHHHHHHHHHHHcCCHHHHH
Q 024858 75 KCGKVEEQIEMLKRKLRLIYQGE--AF-------NGKPTKTARSHGKKFQVSVRQ--ETSRLLGNLAWAYMQKTNFMAAE 143 (261)
Q Consensus 75 ~~g~~~eA~~~~~~al~l~~~~~--~~-------~~~~~~~~~~~~~~~~~~l~p--~~~~~~~~Lg~~~~~~g~~~eA~ 143 (261)
+.+++++|.++|+..++..-+.. |. ..+..+.++..-... +..-| ++-+...--+..-++.|+.+.+.
T Consensus 1542 k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rA-L~~lPk~eHv~~IskfAqLEFk~GDaeRGR 1620 (1710)
T KOG1070|consen 1542 KSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRA-LKSLPKQEHVEFISKFAQLEFKYGDAERGR 1620 (1710)
T ss_pred HhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHH-HhhcchhhhHHHHHHHHHHHhhcCCchhhH
Confidence 99999999999998888632100 00 000000000000000 01111 13334444455555555555555
Q ss_pred HHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 144 VVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 144 ~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
..|+-.|.-+|.-.+ |.-+...-+++|+.+-+..+|++++..
T Consensus 1621 tlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1621 TLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIEL 1663 (1710)
T ss_pred HHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence 555555555555555 555555555555555666666665554
No 217
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=0.003 Score=54.57 Aligned_cols=152 Identities=15% Similarity=0.018 Sum_probs=105.7
Q ss_pred hhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHH
Q 024858 4 LVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQI 83 (261)
Q Consensus 4 ~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~ 83 (261)
+..|++.+|...|..++...|++.++...|+.+|...|+.++|..++... |.+....... + ....+
T Consensus 145 ~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~l----P~~~~~~~~~---------~-l~a~i 210 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAAL----PLQAQDKAAH---------G-LQAQI 210 (304)
T ss_pred hhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhC----cccchhhHHH---------H-HHHHH
Confidence 45789999999999999999999999999999999999999998887553 4321111110 1 12224
Q ss_pred HHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh---hh
Q 024858 84 EMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK---AC 160 (261)
Q Consensus 84 ~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~---~~ 160 (261)
+.+.++-.. |.... -.-.+.-+|++.++.+.|+..|...|+.++|+..+-..+..+-...+ .-
T Consensus 211 ~ll~qaa~~-~~~~~-------------l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk 276 (304)
T COG3118 211 ELLEQAAAT-PEIQD-------------LQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARK 276 (304)
T ss_pred HHHHHHhcC-CCHHH-------------HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHH
Confidence 455554333 10000 00113456889999999999999999999999999999988754432 44
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHH
Q 024858 161 NLGLCLIKRTRYNEARSVLEDVL 183 (261)
Q Consensus 161 ~L~~~l~~~g~~~eA~~~~~~~l 183 (261)
.|-.++...|..+.+...|++-+
T Consensus 277 ~lle~f~~~g~~Dp~~~~~RRkL 299 (304)
T COG3118 277 TLLELFEAFGPADPLVLAYRRKL 299 (304)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHH
Confidence 56667766776555666665544
No 218
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.60 E-value=0.01 Score=54.54 Aligned_cols=152 Identities=14% Similarity=0.086 Sum_probs=105.1
Q ss_pred hcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHH
Q 024858 5 VQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIE 84 (261)
Q Consensus 5 ~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~ 84 (261)
.+++...|...|++|+..+-.+...|..-+-.-........|.....+++.+-|.- ..++.-...+=-..|+...|-+
T Consensus 85 sq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRV--dqlWyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRV--DQLWYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred hHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchH--HHHHHHHHHHHHHhcccHHHHH
Confidence 45677788888888888777777777777777777788888888888888888862 1122112222345688888888
Q ss_pred HHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchhhhhHHH
Q 024858 85 MLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKACNLGL 164 (261)
Q Consensus 85 ~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~L~~ 164 (261)
+|++-+...|+ ..+|...-..-.+....+-|...|++-+-..|+-..|...+.
T Consensus 163 iferW~~w~P~---------------------------eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyar 215 (677)
T KOG1915|consen 163 IFERWMEWEPD---------------------------EQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYAR 215 (677)
T ss_pred HHHHHHcCCCc---------------------------HHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHH
Confidence 88888777552 235555555555666777777777777777777666777777
Q ss_pred HHHHcCCHHHHHHHHHHHHhC
Q 024858 165 CLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 165 ~l~~~g~~~eA~~~~~~~l~~ 185 (261)
.-.+.|...-|..+|++++..
T Consensus 216 FE~k~g~~~~aR~VyerAie~ 236 (677)
T KOG1915|consen 216 FEEKHGNVALARSVYERAIEF 236 (677)
T ss_pred HHHhcCcHHHHHHHHHHHHHH
Confidence 777777777777777777763
No 219
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.59 E-value=0.00012 Score=43.01 Aligned_cols=28 Identities=29% Similarity=0.404 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 024858 125 LLGNLAWAYMQKTNFMAAEVVYQKAQMI 152 (261)
Q Consensus 125 ~~~~Lg~~~~~~g~~~eA~~~~~~al~~ 152 (261)
++.+||.+|.++|++++|+.+|+++|.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4688999999999999999999996654
No 220
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.55 E-value=0.0041 Score=50.66 Aligned_cols=99 Identities=12% Similarity=0.045 Sum_probs=74.8
Q ss_pred HHHHHHHHcCCcHHHHHHHHHHHhcCCch-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhc
Q 024858 32 DMAVVMKQLDRSEEAIEAIKSFRGLCSKQ-SQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSH 110 (261)
Q Consensus 32 ~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~-~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~ 110 (261)
.++......|++++|+..++.++..--+. -...+..-|+.+..++|++|+|...+.....-
T Consensus 94 ~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~------------------ 155 (207)
T COG2976 94 ELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEE------------------ 155 (207)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc------------------
Confidence 36788899999999999999988654331 11223345889999999999999877763321
Q ss_pred hhhhhhhcCCCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh
Q 024858 111 GKKFQVSVRQETSR-LLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK 158 (261)
Q Consensus 111 ~~~~~~~l~p~~~~-~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~ 158 (261)
++.. .-...|.++..+|+.++|...|.+++..+++...
T Consensus 156 ----------~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~~ 194 (207)
T COG2976 156 ----------SWAAIVAELRGDILLAKGDKQEARAAYEKALESDASPAA 194 (207)
T ss_pred ----------cHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChHH
Confidence 1122 2345699999999999999999999999877664
No 221
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.54 E-value=0.00055 Score=56.69 Aligned_cols=75 Identities=23% Similarity=0.248 Sum_probs=58.6
Q ss_pred hhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 024858 116 VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGC 190 (261)
Q Consensus 116 ~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~~~~~ 190 (261)
+.|.|+.|++.+.||..+...|+|+.|.+.|..++++||.+.- +.|-|..+.=-||+.-|.+-+.+.-..++.+|
T Consensus 92 Lai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DP 167 (297)
T COG4785 92 LAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDP 167 (297)
T ss_pred hhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCCh
Confidence 4556777888888888888888888888888888888888887 77888888888888888877777666644333
No 222
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.54 E-value=0.00016 Score=41.09 Aligned_cols=33 Identities=24% Similarity=0.256 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 024858 124 RLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDA 156 (261)
Q Consensus 124 ~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~ 156 (261)
++++++|.+|..+|++++|+..|++++...|++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 367899999999999999999999999999975
No 223
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.53 E-value=0.0024 Score=55.40 Aligned_cols=163 Identities=15% Similarity=0.010 Sum_probs=97.2
Q ss_pred HHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcC----cchHHHhhchhh
Q 024858 38 KQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNG----KPTKTARSHGKK 113 (261)
Q Consensus 38 ~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~----~~~~~~~~~~~~ 113 (261)
+...||.+||+++.......|.+ ......||.+|....+|.+|.++|++.-.+.|.-.-+.- ...+.+..-...
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p~~--rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADAL 98 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSPRS--RAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADAL 98 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHH
Confidence 66789999999999999999963 234456999999999999999999998777653221110 000000000000
Q ss_pred hhhhcCCCcHHHH----HHHHHHHHHcCCHHHHHHHHHHHHhhCC--Cchh-hhhHHHHHHHcCCHHHHHHHHHHHHhCC
Q 024858 114 FQVSVRQETSRLL----GNLAWAYMQKTNFMAAEVVYQKAQMIDP--DANK-ACNLGLCLIKRTRYNEARSVLEDVLYGR 186 (261)
Q Consensus 114 ~~~~l~p~~~~~~----~~Lg~~~~~~g~~~eA~~~~~~al~~~P--~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~ 186 (261)
-.+.+-.+++..+ .--+.+..+.+++.-+.. .++.-| +... ..|.|-.+.+.|++++|.+-|+.++..+
T Consensus 99 rV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rs----LveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvs 174 (459)
T KOG4340|consen 99 RVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRS----LVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVS 174 (459)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHH----HHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhc
Confidence 0001111111111 112334444455444433 333456 3345 7899999999999999999999999964
Q ss_pred CCCCc----------chhhHHHHHHHHHHH
Q 024858 187 IPGCE----------DGRTRKRAEELLLEL 206 (261)
Q Consensus 187 ~~~~~----------~~~~~~~a~~~l~~l 206 (261)
...|. ..+.+..|.....++
T Consensus 175 GyqpllAYniALaHy~~~qyasALk~iSEI 204 (459)
T KOG4340|consen 175 GYQPLLAYNLALAHYSSRQYASALKHISEI 204 (459)
T ss_pred CCCchhHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 33331 234455565555554
No 224
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.50 E-value=0.0093 Score=51.87 Aligned_cols=146 Identities=16% Similarity=0.073 Sum_probs=87.7
Q ss_pred cCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH----cCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcC----
Q 024858 6 QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQ----LDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCG---- 77 (261)
Q Consensus 6 ~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~----~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g---- 77 (261)
..+..+|..+|+.+ .+..++.+.++||.++.. ..+..+|...|+++...+-..+ ......|+..|..-+
T Consensus 90 ~~~~~~A~~~~~~~--a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a-~~~~~~l~~~~~~g~~~~~ 166 (292)
T COG0790 90 SRDKTKAADWYRCA--AADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEA-ALAMYRLGLAYLSGLQALA 166 (292)
T ss_pred cccHHHHHHHHHHH--hhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhH-HHHHHHHHHHHHcChhhhc
Confidence 34556666666633 334555666666666655 3366666666666666543321 111233444443321
Q ss_pred ---CHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHH
Q 024858 78 ---KVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQ----KTNFMAAEVVYQKAQ 150 (261)
Q Consensus 78 ---~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~----~g~~~eA~~~~~~al 150 (261)
+...|...|+++-.. .++++..+||.+|.. ..++.+|...|.+|.
T Consensus 167 ~~~~~~~A~~~~~~aa~~----------------------------~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa 218 (292)
T COG0790 167 VAYDDKKALYLYRKAAEL----------------------------GNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAA 218 (292)
T ss_pred ccHHHHhHHHHHHHHHHh----------------------------cCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHH
Confidence 112344444443332 256788999999855 458999999999999
Q ss_pred hhCCCchh-hhhHHHHHHHcC---------------CHHHHHHHHHHHHhC
Q 024858 151 MIDPDANK-ACNLGLCLIKRT---------------RYNEARSVLEDVLYG 185 (261)
Q Consensus 151 ~~~P~~~~-~~~L~~~l~~~g---------------~~~eA~~~~~~~l~~ 185 (261)
+... .. .++++ ++...| +...|...+.++-..
T Consensus 219 ~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 266 (292)
T COG0790 219 EQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACEL 266 (292)
T ss_pred HCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHc
Confidence 9877 55 77888 666666 666666666665554
No 225
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.48 E-value=0.0042 Score=52.40 Aligned_cols=137 Identities=15% Similarity=0.137 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCch-hHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCc
Q 024858 27 DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ-SQE---SLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGK 102 (261)
Q Consensus 27 ~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~-~~~---~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~ 102 (261)
.+.+..-++.+...+++++|-..+.++.+-.-++ ++. -..--.+.+..+...+.|++.+|+++..+.-
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~-------- 102 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYV-------- 102 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH--------
Confidence 3445666888999999999999999988544331 000 1112234566888999999999999988731
Q ss_pred chHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch------h-hhhHHHHHHHcCCHHHH
Q 024858 103 PTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN------K-ACNLGLCLIKRTRYNEA 175 (261)
Q Consensus 103 ~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~------~-~~~L~~~l~~~g~~~eA 175 (261)
.+| .|+.+..-..-+.=....-++++|+.+|++++.+--.+. + ....+++|.+..+|+||
T Consensus 103 ------E~G-------spdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Ea 169 (308)
T KOG1585|consen 103 ------ECG-------SPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEA 169 (308)
T ss_pred ------HhC-------CcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHH
Confidence 111 122222222333334566799999999999998754332 2 34678999999999999
Q ss_pred HHHHHHHHh
Q 024858 176 RSVLEDVLY 184 (261)
Q Consensus 176 ~~~~~~~l~ 184 (261)
...+.+-..
T Consensus 170 a~a~lKe~~ 178 (308)
T KOG1585|consen 170 ATAFLKEGV 178 (308)
T ss_pred HHHHHHhhh
Confidence 988876433
No 226
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.46 E-value=0.013 Score=52.55 Aligned_cols=70 Identities=16% Similarity=0.049 Sum_probs=61.0
Q ss_pred hhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchhhhhHHHHHH-HcCCHHHHHHHHHHHHhC
Q 024858 116 VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKACNLGLCLI-KRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 116 ~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~L~~~l~-~~g~~~eA~~~~~~~l~~ 185 (261)
..++||+.+.....+..-..-|++..|...-+.+....|.-..+.-|+.+-. +.|+-.++..++-+++..
T Consensus 322 ~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 322 ESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 4678999999999999999999999999999999999998877666666554 459999999999999986
No 227
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.42 E-value=0.0056 Score=53.91 Aligned_cols=57 Identities=9% Similarity=-0.046 Sum_probs=28.6
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 024858 33 MAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLR 91 (261)
Q Consensus 33 Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~ 91 (261)
-+.++-..|.+.+|....++.+.-.|.+ ......--+++.-.|+.+.-...+++.+-
T Consensus 109 ~aai~~~~g~~h~a~~~wdklL~d~PtD--lla~kfsh~a~fy~G~~~~~k~ai~kIip 165 (491)
T KOG2610|consen 109 KAAILWGRGKHHEAAIEWDKLLDDYPTD--LLAVKFSHDAHFYNGNQIGKKNAIEKIIP 165 (491)
T ss_pred hHHHhhccccccHHHHHHHHHHHhCchh--hhhhhhhhhHHHhccchhhhhhHHHHhcc
Confidence 3444455566666655556666655553 11222233444555555555555555444
No 228
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.37 E-value=0.033 Score=50.09 Aligned_cols=159 Identities=15% Similarity=0.107 Sum_probs=96.9
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCChHHH-HHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHH
Q 024858 3 QLVQKDPEAAIVLFWKAINAGDRVDSA-LKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEE 81 (261)
Q Consensus 3 ~~~~~~~~~A~~~~~~al~~~p~~~~a-l~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~e 81 (261)
-+++|+++.|..-|+ +.-.+|+.-.. +..|-.--...|..+-|+.+-+.+....|.-++. +..+| .-....|+++.
T Consensus 130 al~eG~~~~Ar~kfe-AMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA-~~AtL-e~r~~~gdWd~ 206 (531)
T COG3898 130 ALLEGDYEDARKKFE-AMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWA-ARATL-EARCAAGDWDG 206 (531)
T ss_pred HHhcCchHHHHHHHH-HHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchH-HHHHH-HHHHhcCChHH
Confidence 367899999999998 44446654322 2223333356799999999999999998874333 22333 33478899999
Q ss_pred HHHHHHHHHHhh--cchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-
Q 024858 82 QIEMLKRKLRLI--YQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK- 158 (261)
Q Consensus 82 A~~~~~~al~l~--~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~- 158 (261)
|+++........ .++.+- .. -+-.+..-+.... .-+...|...-.+++++.|+...
T Consensus 207 AlkLvd~~~~~~vie~~~ae---------R~-----------rAvLLtAkA~s~l-dadp~~Ar~~A~~a~KL~pdlvPa 265 (531)
T COG3898 207 ALKLVDAQRAAKVIEKDVAE---------RS-----------RAVLLTAKAMSLL-DADPASARDDALEANKLAPDLVPA 265 (531)
T ss_pred HHHHHHHHHHHHhhchhhHH---------HH-----------HHHHHHHHHHHHh-cCChHHHHHHHHHHhhcCCccchH
Confidence 999888766541 111000 00 0001111222222 23466667777777777777776
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 159 ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 159 ~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
...-+..|.+.|+.-++..+++.+-..
T Consensus 266 av~AAralf~d~~~rKg~~ilE~aWK~ 292 (531)
T COG3898 266 AVVAARALFRDGNLRKGSKILETAWKA 292 (531)
T ss_pred HHHHHHHHHhccchhhhhhHHHHHHhc
Confidence 666677777777777777777766664
No 229
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=97.37 E-value=0.0017 Score=46.62 Aligned_cols=80 Identities=18% Similarity=0.183 Sum_probs=59.8
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 024858 12 AIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLR 91 (261)
Q Consensus 12 A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~ 91 (261)
.+..+++++..+|++.++.+.+|..+...|++++|++.+-.+++.+|+.........+..+....|.-+.-..-|++-|.
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL~ 86 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKLA 86 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 36678899999999999999999999999999999999999999988632233445566677777887767777776543
No 230
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.37 E-value=0.027 Score=50.81 Aligned_cols=130 Identities=16% Similarity=0.208 Sum_probs=93.6
Q ss_pred hHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc----CCchhHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhhcchhh
Q 024858 26 VDSALKDMAVVMKQLDRSEEAIEAIKSFRGL----CSKQSQESLDNVLIDLYKK---CGKVEEQIEMLKRKLRLIYQGEA 98 (261)
Q Consensus 26 ~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~----~P~~~~~~~~~~L~~ly~~---~g~~~eA~~~~~~al~l~~~~~~ 98 (261)
.++.+.+|=..|....+|+.=|.+.+.+-.+ .++.. .+....|-.+-+ .|+.++|+..+..++....
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~--~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~---- 213 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQH--NIKFQYAFALNRRNKPGDREKALQILLPVLESDE---- 213 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcch--HHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccC----
Confidence 3566778888899999999999999887666 22321 233334555666 8999999999999766421
Q ss_pred hcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHhhCCCchhhhhHHHHHHHc
Q 024858 99 FNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQ---------KTNFMAAEVVYQKAQMIDPDANKACNLGLCLIKR 169 (261)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~---------~g~~~eA~~~~~~al~~~P~~~~~~~L~~~l~~~ 169 (261)
+.+++++.-+|.+|.. ....++|+..|+++.+++|+.-.-.|++.++.-.
T Consensus 214 ---------------------~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~ 272 (374)
T PF13281_consen 214 ---------------------NPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLA 272 (374)
T ss_pred ---------------------CCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHc
Confidence 2356778888888743 2347899999999999997666678888888888
Q ss_pred CCHHHHHHHHHHH
Q 024858 170 TRYNEARSVLEDV 182 (261)
Q Consensus 170 g~~~eA~~~~~~~ 182 (261)
|...+.....+++
T Consensus 273 g~~~~~~~el~~i 285 (374)
T PF13281_consen 273 GHDFETSEELRKI 285 (374)
T ss_pred CCcccchHHHHHH
Confidence 8655555444443
No 231
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.36 E-value=0.0022 Score=56.89 Aligned_cols=142 Identities=14% Similarity=0.079 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCc--hh--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcc
Q 024858 28 SALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK--QS--QESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKP 103 (261)
Q Consensus 28 ~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~--~~--~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~ 103 (261)
.++..||..+..++.++++.+.++++.+...+ |+ ...+...|+.++-...++++|.-+..++.++-.. + + .
T Consensus 123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s---~-~-l 197 (518)
T KOG1941|consen 123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNS---Y-G-L 197 (518)
T ss_pred hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHh---c-C-c
Confidence 34555777777777777777777777665332 11 1122345677777777777777777777776210 0 0 0
Q ss_pred hHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---Cc---hh-hhhHHHHHHHcCCHHHHH
Q 024858 104 TKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDP---DA---NK-ACNLGLCLIKRTRYNEAR 176 (261)
Q Consensus 104 ~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P---~~---~~-~~~L~~~l~~~g~~~eA~ 176 (261)
+ .....+ ..-+++.++.+|..+|+...|.++.+++.++.- |. +. ..-+|.+|...|+.+-|.
T Consensus 198 -~---d~~~ky-------r~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af 266 (518)
T KOG1941|consen 198 -K---DWSLKY-------RAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAF 266 (518)
T ss_pred -C---chhHHH-------HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHH
Confidence 0 000000 123778999999999999999999999988642 22 23 457899999999999999
Q ss_pred HHHHHHHhC
Q 024858 177 SVLEDVLYG 185 (261)
Q Consensus 177 ~~~~~~l~~ 185 (261)
.-|+.+...
T Consensus 267 ~rYe~Am~~ 275 (518)
T KOG1941|consen 267 RRYEQAMGT 275 (518)
T ss_pred HHHHHHHHH
Confidence 999988774
No 232
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.31 E-value=0.026 Score=53.67 Aligned_cols=156 Identities=18% Similarity=0.169 Sum_probs=110.8
Q ss_pred hhcCCHHHHHHHHHHHHHcC-C---ChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCch-----------hHH-----
Q 024858 4 LVQKDPEAAIVLFWKAINAG-D---RVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ-----------SQE----- 63 (261)
Q Consensus 4 ~~~~~~~~A~~~~~~al~~~-p---~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~-----------~~~----- 63 (261)
-..|+++.|...|.++.+.+ + +.++.|.+-|..-....+++.|..+.+.+... |.. ++.
T Consensus 398 e~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v-P~~~~~~~yd~~~pvQ~rlhrS 476 (835)
T KOG2047|consen 398 ENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHV-PTNPELEYYDNSEPVQARLHRS 476 (835)
T ss_pred HhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC-CCchhhhhhcCCCcHHHHHHHh
Confidence 35789999999999999854 2 33677888888888899999999999988754 221 111
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHH
Q 024858 64 -SLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAA 142 (261)
Q Consensus 64 -~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA 142 (261)
.++...+++-...|=++.-..+|++.+.+.- -.|.+..|.|..+....-+++|
T Consensus 477 lkiWs~y~DleEs~gtfestk~vYdriidLri--------------------------aTPqii~NyAmfLEeh~yfees 530 (835)
T KOG2047|consen 477 LKIWSMYADLEESLGTFESTKAVYDRIIDLRI--------------------------ATPQIIINYAMFLEEHKYFEES 530 (835)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc--------------------------CCHHHHHHHHHHHHhhHHHHHH
Confidence 1235567777778888888888888888731 1466778888888888888888
Q ss_pred HHHHHHHHhhCCCc--hh-hhh-HHHHHHHc--CCHHHHHHHHHHHHhCC
Q 024858 143 EVVYQKAQMIDPDA--NK-ACN-LGLCLIKR--TRYNEARSVLEDVLYGR 186 (261)
Q Consensus 143 ~~~~~~al~~~P~~--~~-~~~-L~~~l~~~--g~~~eA~~~~~~~l~~~ 186 (261)
.+.|++-+.+.|-- .+ |.. |..+-.+- -+.+-|..+|+++|...
T Consensus 531 Fk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~C 580 (835)
T KOG2047|consen 531 FKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGC 580 (835)
T ss_pred HHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Confidence 88888888876432 24 542 33332232 36778888888888863
No 233
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.31 E-value=0.0074 Score=54.37 Aligned_cols=134 Identities=17% Similarity=0.095 Sum_probs=91.2
Q ss_pred cCCHHHHHHHHHHHH-HcCCChHHHHHHHHHHHHH---------cCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Q 024858 6 QKDPEAAIVLFWKAI-NAGDRVDSALKDMAVVMKQ---------LDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKK 75 (261)
Q Consensus 6 ~~~~~~A~~~~~~al-~~~p~~~~al~~Lg~~~~~---------~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~ 75 (261)
.||.++|+..+..++ ..++..++++-.+|.+|.. ....++||..|+++..+.|+. ..+.+++.++..
T Consensus 195 ~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~---Y~GIN~AtLL~~ 271 (374)
T PF13281_consen 195 PGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY---YSGINAATLLML 271 (374)
T ss_pred CCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc---cchHHHHHHHHH
Confidence 799999999999955 5777889999999999843 235789999999999999872 245557788888
Q ss_pred cCCHHHHHHHHHHHH-HhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 024858 76 CGKVEEQIEMLKRKL-RLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDP 154 (261)
Q Consensus 76 ~g~~~eA~~~~~~al-~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P 154 (261)
.|...+...-.++.. +++. +.+... ... +-++-+.+..++.+..-.|++++|++.+++++++.|
T Consensus 272 ~g~~~~~~~el~~i~~~l~~----llg~kg----~~~-------~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~ 336 (374)
T PF13281_consen 272 AGHDFETSEELRKIGVKLSS----LLGRKG----SLE-------KMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKP 336 (374)
T ss_pred cCCcccchHHHHHHHHHHHH----HHHhhc----ccc-------ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Confidence 887666654455433 2210 000000 000 001234556777888888888888888888888876
Q ss_pred Cch
Q 024858 155 DAN 157 (261)
Q Consensus 155 ~~~ 157 (261)
...
T Consensus 337 ~~W 339 (374)
T PF13281_consen 337 PAW 339 (374)
T ss_pred cch
Confidence 554
No 234
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.27 E-value=0.0058 Score=45.85 Aligned_cols=94 Identities=18% Similarity=0.113 Sum_probs=67.7
Q ss_pred HHcCCHHHHHHHHHHHHHhh---cchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 024858 74 KKCGKVEEQIEMLKRKLRLI---YQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQ 150 (261)
Q Consensus 74 ~~~g~~~eA~~~~~~al~l~---~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al 150 (261)
.+-|-|++|...+++++++. |+.++|. |.. | ++-.+..|+.++..+|+|+|++..-.++|
T Consensus 20 l~~g~~~eAa~s~r~AM~~srtiP~eEaFD---------h~G-F-------DA~chA~Ls~A~~~Lgry~e~L~sA~~aL 82 (144)
T PF12968_consen 20 LQDGAYEEAAASCRKAMEVSRTIPAEEAFD---------HDG-F-------DAFCHAGLSGALAGLGRYDECLQSADRAL 82 (144)
T ss_dssp HHHT-HHHHHHHHHHHHHHHTTS-TTS------------HHH-H-------HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHHhccCChHhhcc---------ccc-H-------HHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 45689999999999999984 4333332 110 1 23367789999999999999998888888
Q ss_pred h-------hCCCchh-h----hhHHHHHHHcCCHHHHHHHHHHHHh
Q 024858 151 M-------IDPDANK-A----CNLGLCLIKRTRYNEARSVLEDVLY 184 (261)
Q Consensus 151 ~-------~~P~~~~-~----~~L~~~l~~~g~~~eA~~~~~~~l~ 184 (261)
. ++.|... | ++-+.++...|+.+||+..|+.+-.
T Consensus 83 ~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 83 RYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 5 5666665 6 4678999999999999999997665
No 235
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.26 E-value=0.0071 Score=56.55 Aligned_cols=125 Identities=17% Similarity=-0.058 Sum_probs=98.3
Q ss_pred hcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCc--hhHHHHHHHHHHHHHHcCCHHHH
Q 024858 5 VQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK--QSQESLDNVLIDLYKKCGKVEEQ 82 (261)
Q Consensus 5 ~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~--~~~~~~~~~L~~ly~~~g~~~eA 82 (261)
...+.+.|..++....+.-|+..--+...|.++...|+.++|++.+++++..... +.......-++..+.-+++|++|
T Consensus 245 ~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A 324 (468)
T PF10300_consen 245 EDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA 324 (468)
T ss_pred cCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence 4667888999999999999998888888999999999999999999988854433 21222334577888899999999
Q ss_pred HHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHhhCC
Q 024858 83 IEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNF-------MAAEVVYQKAQMIDP 154 (261)
Q Consensus 83 ~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~-------~eA~~~~~~al~~~P 154 (261)
...+.+.++.+... ..-..+..|.|+...|+. ++|...|+++-.+-.
T Consensus 325 ~~~f~~L~~~s~WS-------------------------ka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~ 378 (468)
T PF10300_consen 325 AEYFLRLLKESKWS-------------------------KAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQ 378 (468)
T ss_pred HHHHHHHHhccccH-------------------------HHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence 99999988864210 112345679999999999 899999998876554
No 236
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=97.26 E-value=0.00046 Score=37.78 Aligned_cols=33 Identities=33% Similarity=0.452 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 024858 124 RLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDA 156 (261)
Q Consensus 124 ~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~ 156 (261)
.++.++|.++..+|++++|+..|+++++++|++
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence 467899999999999999999999999998863
No 237
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.25 E-value=0.00071 Score=61.79 Aligned_cols=88 Identities=19% Similarity=0.118 Sum_probs=77.4
Q ss_pred HHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 024858 73 YKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMI 152 (261)
Q Consensus 73 y~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~ 152 (261)
..+-+.|+.|+..|-+++++.| +.+..+.|.+.++...+++..|+.-..+|+++
T Consensus 14 ~l~~~~fd~avdlysKaI~ldp--------------------------nca~~~anRa~a~lK~e~~~~Al~Da~kaie~ 67 (476)
T KOG0376|consen 14 ALKDKVFDVAVDLYSKAIELDP--------------------------NCAIYFANRALAHLKVESFGGALHDALKAIEL 67 (476)
T ss_pred hcccchHHHHHHHHHHHHhcCC--------------------------cceeeechhhhhheeechhhhHHHHHHhhhhc
Confidence 3577999999999999999853 44556677888999999999999999999999
Q ss_pred CCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhCC
Q 024858 153 DPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGR 186 (261)
Q Consensus 153 ~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~ 186 (261)
+|.... ++.-|.+.+..+++.+|...|+.+....
T Consensus 68 dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~ 102 (476)
T KOG0376|consen 68 DPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLA 102 (476)
T ss_pred CchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcC
Confidence 999998 7788999999999999999999999973
No 238
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.19 E-value=0.0068 Score=53.43 Aligned_cols=161 Identities=16% Similarity=0.040 Sum_probs=105.6
Q ss_pred HHHHHHcCCChHHHHH-HHHHHHHHcCCcHHHHHHHHHHHhcCCc--hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 024858 16 FWKAINAGDRVDSALK-DMAVVMKQLDRSEEAIEAIKSFRGLCSK--QSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRL 92 (261)
Q Consensus 16 ~~~al~~~p~~~~al~-~Lg~~~~~~g~~~eAi~~~~~~~~~~P~--~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l 92 (261)
..+....+|...-+.. .+|.+....++..+-++.++++..-.-. ++.+.... -+.++-..|++-+|...+++.|.-
T Consensus 54 a~kL~ssDP~~Vmart~a~gl~~iaa~s~v~~ak~~dqav~dav~y~~arEk~h~-~aai~~~~g~~h~a~~~wdklL~d 132 (491)
T KOG2610|consen 54 AEKLSSSDPEAVMARTFALGLVLIAAASNVEFAKKMDQAVIDAVKYGNAREKRHA-KAAILWGRGKHHEAAIEWDKLLDD 132 (491)
T ss_pred HHHHhcCChHHHHHHHHHHhhhhhhccchhhHHHHHHHHHHHHHHHhhhHHhhhh-hHHHhhccccccHHHHHHHHHHHh
Confidence 3444557787666643 4688888888877777777665321111 11122221 223446789999999999999986
Q ss_pred hcchh-hh---------cCcchHHHhhchhh-hhhhcCC----Cc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 024858 93 IYQGE-AF---------NGKPTKTARSHGKK-FQVSVRQ----ET---SRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDP 154 (261)
Q Consensus 93 ~~~~~-~~---------~~~~~~~~~~~~~~-~~~~l~p----~~---~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P 154 (261)
.|.+- +. +|+. .+.. ....|-| +. .-++..++..+...|-|++|++.-+++++++|
T Consensus 133 ~PtDlla~kfsh~a~fy~G~~------~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~ 206 (491)
T KOG2610|consen 133 YPTDLLAVKFSHDAHFYNGNQ------IGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINR 206 (491)
T ss_pred CchhhhhhhhhhhHHHhccch------hhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCC
Confidence 55331 11 1110 0000 0011222 22 33566789999999999999999999999999
Q ss_pred Cchh-hhhHHHHHHHcCCHHHHHHHHHHHH
Q 024858 155 DANK-ACNLGLCLIKRTRYNEARSVLEDVL 183 (261)
Q Consensus 155 ~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l 183 (261)
.+.- ...++.++...||+.|+.+.+.+--
T Consensus 207 ~D~Wa~Ha~aHVlem~~r~Keg~eFM~~te 236 (491)
T KOG2610|consen 207 FDCWASHAKAHVLEMNGRHKEGKEFMYKTE 236 (491)
T ss_pred cchHHHHHHHHHHHhcchhhhHHHHHHhcc
Confidence 8886 7788999999999999999988643
No 239
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.17 E-value=0.0043 Score=51.53 Aligned_cols=105 Identities=14% Similarity=0.009 Sum_probs=85.3
Q ss_pred hHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchH
Q 024858 26 VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTK 105 (261)
Q Consensus 26 ~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~ 105 (261)
.+..++.-|+.|-..|-..-|.--+.+++.+.|+. ..+.|.||--+...|+|+.|.+.+...++++|
T Consensus 64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m--~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp----------- 130 (297)
T COG4785 64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDM--PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP----------- 130 (297)
T ss_pred HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCc--HHHHHHHHHHHHhcccchHHHHHhhhHhccCC-----------
Confidence 45556677888888888888888888999999994 35778899888999999999999999999864
Q ss_pred HHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh
Q 024858 106 TARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK 158 (261)
Q Consensus 106 ~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~ 158 (261)
...-++.|.|..+.--|+|.-|..-+.+-.+-||+++-
T Consensus 131 ---------------~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPf 168 (297)
T COG4785 131 ---------------TYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPF 168 (297)
T ss_pred ---------------cchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChH
Confidence 23346778888888888888888888888888888874
No 240
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.0021 Score=56.37 Aligned_cols=96 Identities=21% Similarity=0.146 Sum_probs=81.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCC-cHHHHHHHHHHHHHcCCHHHHHHH
Q 024858 67 NVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQE-TSRLLGNLAWAYMQKTNFMAAEVV 145 (261)
Q Consensus 67 ~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~-~~~~~~~Lg~~~~~~g~~~eA~~~ 145 (261)
.--|+-|.+.++|..|+..|.+.|+..-++ |+ ++-.+.|.+.+..-.|+|.-|+.-
T Consensus 85 KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D-----------------------~dlnavLY~NRAAa~~~l~NyRs~l~D 141 (390)
T KOG0551|consen 85 KEEGNEYFKEKRYKDAVESYTEGLKKKCAD-----------------------PDLNAVLYTNRAAAQLYLGNYRSALND 141 (390)
T ss_pred HHHhHHHHHhhhHHHHHHHHHHHHhhcCCC-----------------------ccHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 345778899999999999999999974211 11 244788999999999999999999
Q ss_pred HHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 146 YQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 146 ~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
..+|+.++|++.. .+.=+.|+.++.++++|..+++..+..
T Consensus 142 cs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~ 182 (390)
T KOG0551|consen 142 CSAALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQI 182 (390)
T ss_pred HHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhh
Confidence 9999999999999 888899999999999999999877664
No 241
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.13 E-value=0.0031 Score=55.97 Aligned_cols=132 Identities=18% Similarity=0.130 Sum_probs=97.6
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCChHH------HHHHHHHHHHHcCCcHHHHHHHHHHHhcCC----chhH----HHHHHH
Q 024858 3 QLVQKDPEAAIVLFWKAINAGDRVDS------ALKDMAVVMKQLDRSEEAIEAIKSFRGLCS----KQSQ----ESLDNV 68 (261)
Q Consensus 3 ~~~~~~~~~A~~~~~~al~~~p~~~~------al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P----~~~~----~~~~~~ 68 (261)
++--+.++++++.|++|++...++.+ ....||.++.+..++++|.-...++..+-. ++++ .....-
T Consensus 132 hlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyh 211 (518)
T KOG1941|consen 132 HLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYH 211 (518)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHH
Confidence 44456789999999999986554433 355699999999999999988777665432 2211 122344
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 024858 69 LIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQK 148 (261)
Q Consensus 69 L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~ 148 (261)
++..|..+|+..+|.++.+++.++. -.+++... .+..+..+|.+|...|+.+.|..-|+.
T Consensus 212 maValR~~G~LgdA~e~C~Ea~kla--------------l~~Gdra~------~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 212 MAVALRLLGRLGDAMECCEEAMKLA--------------LQHGDRAL------QARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHH--------------HHhCChHH------HHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 6778899999999999999999873 12222211 345677899999999999999999999
Q ss_pred HHhhCC
Q 024858 149 AQMIDP 154 (261)
Q Consensus 149 al~~~P 154 (261)
|....-
T Consensus 272 Am~~m~ 277 (518)
T KOG1941|consen 272 AMGTMA 277 (518)
T ss_pred HHHHHh
Confidence 987643
No 242
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.006 Score=51.54 Aligned_cols=106 Identities=18% Similarity=-0.007 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHh--------cCCchh--------HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 024858 27 DSALKDMAVVMKQLDRSEEAIEAIKSFRG--------LCSKQS--------QESLDNVLIDLYKKCGKVEEQIEMLKRKL 90 (261)
Q Consensus 27 ~~al~~Lg~~~~~~g~~~eAi~~~~~~~~--------~~P~~~--------~~~~~~~L~~ly~~~g~~~eA~~~~~~al 90 (261)
.++++.-|+-+..+|+|.||+..|+.++. --|.++ ...+..+...++...|+|=++++.....|
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 56788889999999999999999987753 235321 12234456778888999999999998888
Q ss_pred HhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh
Q 024858 91 RLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK 158 (261)
Q Consensus 91 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~ 158 (261)
+.. |.+..+++..|.+....-+..||.+-|.++|+++|.-.+
T Consensus 258 ~~~--------------------------~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslas 299 (329)
T KOG0545|consen 258 RHH--------------------------PGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLAS 299 (329)
T ss_pred hcC--------------------------CchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHH
Confidence 864 345678999999999999999999999999999998765
No 243
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.08 E-value=0.0013 Score=38.57 Aligned_cols=27 Identities=33% Similarity=0.496 Sum_probs=22.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 024858 67 NVLIDLYKKCGKVEEQIEMLKRKLRLI 93 (261)
Q Consensus 67 ~~L~~ly~~~g~~~eA~~~~~~al~l~ 93 (261)
..||.+|.++|++++|+++|+++|.+.
T Consensus 3 ~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 3 NNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 458999999999999999999988763
No 244
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.05 E-value=0.0056 Score=59.75 Aligned_cols=114 Identities=14% Similarity=0.154 Sum_probs=87.7
Q ss_pred HHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhh
Q 024858 38 KQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVS 117 (261)
Q Consensus 38 ~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (261)
...+++..|.+...+.++..|+-....+. -|-.+.++|+.++|..+++. +..-
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a~vL--kaLsl~r~gk~~ea~~~Le~-~~~~------------------------ 72 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYAKVL--KALSLFRLGKGDEALKLLEA-LYGL------------------------ 72 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHHHHH--HHHHHHHhcCchhHHHHHhh-hccC------------------------
Confidence 35678999999999999999984333232 34566899999999966655 3321
Q ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHH----HHHHHH
Q 024858 118 VRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNE----ARSVLE 180 (261)
Q Consensus 118 l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~e----A~~~~~ 180 (261)
.+++..++..+-.||..+|++++|..+|++++..+|. .. .+.+=++|.+-+.|.+ |++.|+
T Consensus 73 -~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK 138 (932)
T KOG2053|consen 73 -KGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYK 138 (932)
T ss_pred -CCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1345567888999999999999999999999999999 55 7788888888877654 555555
No 245
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.04 E-value=0.028 Score=48.95 Aligned_cols=81 Identities=12% Similarity=0.070 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHH-HHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 024858 9 PEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEE-AIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLK 87 (261)
Q Consensus 9 ~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~e-Ai~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~ 87 (261)
.+.|...|.+|.+..+-..+.+...|.+-...++..+ |..+|+..++..|.+. .++..-.+.+...|+.+.|-.+|+
T Consensus 17 ~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~--~~~~~Y~~~l~~~~d~~~aR~lfe 94 (280)
T PF05843_consen 17 IEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDP--DFWLEYLDFLIKLNDINNARALFE 94 (280)
T ss_dssp HHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-H--HHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHhCcHHHHHHHHH
Confidence 4445555555544333344444444444333222222 5555555555555421 122222344444555555555555
Q ss_pred HHHH
Q 024858 88 RKLR 91 (261)
Q Consensus 88 ~al~ 91 (261)
+++.
T Consensus 95 r~i~ 98 (280)
T PF05843_consen 95 RAIS 98 (280)
T ss_dssp HHCC
T ss_pred HHHH
Confidence 5444
No 246
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.02 E-value=0.028 Score=48.95 Aligned_cols=128 Identities=11% Similarity=-0.025 Sum_probs=95.4
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhhcchhhhcCcchHHHh
Q 024858 30 LKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKK-CGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTAR 108 (261)
Q Consensus 30 l~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~-~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~ 108 (261)
|..+.....+.+..+.|...++++++..+-. ..++...|.+-.. .++.+-|..+|+.+++..+
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~--~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~-------------- 67 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDKRCT--YHVYVAYALMEYYCNKDPKRARKIFERGLKKFP-------------- 67 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCS---THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHT--------------
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC--------------
Confidence 4445566666677999999999998654432 2344446666455 4555559999999999753
Q ss_pred hchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch---h-hhhHHHHHHHcCCHHHHHHHHHHHHh
Q 024858 109 SHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN---K-ACNLGLCLIKRTRYNEARSVLEDVLY 184 (261)
Q Consensus 109 ~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~---~-~~~L~~~l~~~g~~~eA~~~~~~~l~ 184 (261)
++.+.|......+...|+.+.|..+|++++..-|... . |......=.+.|+.+....+++++..
T Consensus 68 ------------~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 68 ------------SDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp ------------T-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred ------------CCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3556788777888899999999999999999888776 3 66778888888999999999998887
Q ss_pred C
Q 024858 185 G 185 (261)
Q Consensus 185 ~ 185 (261)
.
T Consensus 136 ~ 136 (280)
T PF05843_consen 136 L 136 (280)
T ss_dssp H
T ss_pred H
Confidence 5
No 247
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.02 E-value=0.06 Score=47.74 Aligned_cols=147 Identities=15% Similarity=0.081 Sum_probs=99.6
Q ss_pred CCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCch-h-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhc
Q 024858 23 GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ-S-QESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFN 100 (261)
Q Consensus 23 ~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~-~-~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~ 100 (261)
.......+..++.+....|+++-|..++.++...++.. . ...+...-+.++-..|+..+|+..++..++....+....
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~ 221 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDS 221 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccc
Confidence 55677889999999999999999999999998876321 0 112344457788999999999999999888322111000
Q ss_pred --CcchHHH-----h-hchhhhhhhcCCCcHHHHHHHHHHHHHc------CCHHHHHHHHHHHHhhCCCchh-hhhHHHH
Q 024858 101 --GKPTKTA-----R-SHGKKFQVSVRQETSRLLGNLAWAYMQK------TNFMAAEVVYQKAQMIDPDANK-ACNLGLC 165 (261)
Q Consensus 101 --~~~~~~~-----~-~~~~~~~~~l~p~~~~~~~~Lg~~~~~~------g~~~eA~~~~~~al~~~P~~~~-~~~L~~~ 165 (261)
....... . .........-....+.++..+|.....+ +..++++..|+++++++|+... |+.+|..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 222 ISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred ccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 0000000 0 0000000000011356788899999888 9999999999999999999998 8888887
Q ss_pred HHHc
Q 024858 166 LIKR 169 (261)
Q Consensus 166 l~~~ 169 (261)
+.+.
T Consensus 302 ~~~~ 305 (352)
T PF02259_consen 302 NDKL 305 (352)
T ss_pred HHHH
Confidence 7554
No 248
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.00 E-value=0.15 Score=43.02 Aligned_cols=180 Identities=22% Similarity=0.240 Sum_probs=111.4
Q ss_pred cCCHHHHHHHHHHHHH----cCCC--hHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhH----HHHHHHHHHHHHH
Q 024858 6 QKDPEAAIVLFWKAIN----AGDR--VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQ----ESLDNVLIDLYKK 75 (261)
Q Consensus 6 ~~~~~~A~~~~~~al~----~~p~--~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~----~~~~~~L~~ly~~ 75 (261)
.++++.|=..|-++.. .+.+ .+.++...+.+|.. ++..+|+..+++++.+.-+-.. ......+|.+|..
T Consensus 47 aK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk-~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEs 125 (288)
T KOG1586|consen 47 AKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKK-VDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYES 125 (288)
T ss_pred HHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhh
Confidence 3556666666666653 3332 34445666666655 4889999999888887654111 1123457788766
Q ss_pred c-CCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 024858 76 C-GKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDP 154 (261)
Q Consensus 76 ~-g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P 154 (261)
- .++++||..|+++-+-. .++-.+. + --..+.-.+..-.+.++|.+|+..|+++....-
T Consensus 126 dl~d~ekaI~~YE~Aae~y-k~ees~s-------s------------ANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~ 185 (288)
T KOG1586|consen 126 DLQDFEKAIAHYEQAAEYY-KGEESVS-------S------------ANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSL 185 (288)
T ss_pred hHHHHHHHHHHHHHHHHHH-cchhhhh-------h------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5 88999999999987642 1110000 0 011333445555778999999999999988776
Q ss_pred Cchh--------hhhHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchhhHHHHHHHHHHHH
Q 024858 155 DANK--------ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELLLELE 207 (261)
Q Consensus 155 ~~~~--------~~~L~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~a~~~l~~l~ 207 (261)
+|+- .+.-|.|++-.++.-.+...+++-.... |...+.....-...++.++.
T Consensus 186 ~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~d-P~F~dsREckflk~L~~aie 245 (288)
T KOG1586|consen 186 DNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELD-PAFTDSRECKFLKDLLDAIE 245 (288)
T ss_pred cchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcC-CcccccHHHHHHHHHHHHHh
Confidence 6652 2356888888888888888888777762 23334444444445555554
No 249
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.98 E-value=0.025 Score=47.25 Aligned_cols=109 Identities=20% Similarity=0.205 Sum_probs=69.7
Q ss_pred cCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----
Q 024858 76 CGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQM---- 151 (261)
Q Consensus 76 ~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~---- 151 (261)
.-.+++|++.|.-|+-...- ...+.. ..+.++..+||+|..+|+.+....++++|+.
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~---~~~~~s----------------~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~ 150 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQI---KKEKPS----------------KKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEE 150 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHH---hCCCHH----------------HHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHH
Confidence 45688888888887765210 000000 1245778899999999996665555555554
Q ss_pred ---hC--CCc----hh-hhhHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchhhHHHHHHHHH
Q 024858 152 ---ID--PDA----NK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELLL 204 (261)
Q Consensus 152 ---~~--P~~----~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~a~~~l~ 204 (261)
.. |.. .. .+-+|.+..+.|++++|..+|.+++... ..+..+.-.+.|.+...
T Consensus 151 a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~-~~s~~~~l~~~AR~~w~ 212 (214)
T PF09986_consen 151 AYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK-KASKEPKLKDMARDQWQ 212 (214)
T ss_pred HHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC-CCCCcHHHHHHHHHHHH
Confidence 33 222 13 4678999999999999999999999962 22223344455555543
No 250
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.98 E-value=0.0013 Score=37.60 Aligned_cols=30 Identities=27% Similarity=0.293 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHhcCC
Q 024858 29 ALKDMAVVMKQLDRSEEAIEAIKSFRGLCS 58 (261)
Q Consensus 29 al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P 58 (261)
++..+|.++.++|++++|+..|+++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 344445555555555555555555554444
No 251
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=96.94 E-value=0.0053 Score=57.60 Aligned_cols=98 Identities=19% Similarity=0.209 Sum_probs=76.7
Q ss_pred HHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhh
Q 024858 38 KQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVS 117 (261)
Q Consensus 38 ~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (261)
..+|....|++.+..++-..|.+....+.+ |+.++.+.|-.-+|-..+.++|.+..
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~-la~~~~~~~~~~da~~~l~q~l~~~~----------------------- 673 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDVPLVN-LANLLIHYGLHLDATKLLLQALAINS----------------------- 673 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhcccHHH-HHHHHHHhhhhccHHHHHHHHHhhcc-----------------------
Confidence 667888888888888888888644444444 78888888888888888888888742
Q ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhH
Q 024858 118 VRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNL 162 (261)
Q Consensus 118 l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L 162 (261)
.-|-.+..+|.+|..+.+.+.|++.|+.|+..+|+++. ...|
T Consensus 674 ---sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l 716 (886)
T KOG4507|consen 674 ---SEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSL 716 (886)
T ss_pred ---cCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHH
Confidence 12335677899999999999999999999999999887 5444
No 252
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=96.92 E-value=0.0023 Score=38.15 Aligned_cols=29 Identities=31% Similarity=0.311 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 024858 124 RLLGNLAWAYMQKTNFMAAEVVYQKAQMI 152 (261)
Q Consensus 124 ~~~~~Lg~~~~~~g~~~eA~~~~~~al~~ 152 (261)
.++++||.+|..+|++++|+.++++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 46788888888888888888888888875
No 253
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.86 E-value=0.0016 Score=36.79 Aligned_cols=32 Identities=25% Similarity=0.230 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCc
Q 024858 28 SALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK 59 (261)
Q Consensus 28 ~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~ 59 (261)
+++..+|.++...|++++|+..+++++...|+
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 36777888888888888888888888887776
No 254
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.84 E-value=0.005 Score=56.64 Aligned_cols=142 Identities=18% Similarity=0.146 Sum_probs=100.4
Q ss_pred HHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHH-HhcCCch------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 024858 19 AINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSF-RGLCSKQ------SQESLDNVLIDLYKKCGKVEEQIEMLKRKLR 91 (261)
Q Consensus 19 al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~-~~~~P~~------~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~ 91 (261)
+.....+.+.++..-+..+...|++..|.+.+... +.-.|.. .....+|+||-+..+.|.|.-++.+|.++|+
T Consensus 232 vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~ 311 (696)
T KOG2471|consen 232 VMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALR 311 (696)
T ss_pred hhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHH
Confidence 33445567778888899999999999999987543 3333321 1122346789999999999999999999997
Q ss_pred hhcchhhhcC-cchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHc
Q 024858 92 LIYQGEAFNG-KPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKR 169 (261)
Q Consensus 92 l~~~~~~~~~-~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~ 169 (261)
-... ...+| +.. +.+.+ ..-..-++++|.|..|...|++-+|.++|.+++...-.++. |..|+.|.+..
T Consensus 312 N~c~-qL~~g~~~~-------~~~tl-s~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 312 NSCS-QLRNGLKPA-------KTFTL-SQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred HHHH-HHhccCCCC-------cceeh-hcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 2110 00011 000 00000 00012358999999999999999999999999999999999 99999998754
No 255
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.82 E-value=0.02 Score=45.36 Aligned_cols=90 Identities=16% Similarity=0.082 Sum_probs=70.9
Q ss_pred CCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCc
Q 024858 23 GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGK 102 (261)
Q Consensus 23 ~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~ 102 (261)
++.....+..+..+-.+.++.+++...+..+.-+.|+. ..+...-|.++...|++.+|+.+++.+.+-.
T Consensus 6 ~~~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~--~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--------- 74 (160)
T PF09613_consen 6 SDEIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEF--PELDLFDGWLHIVRGDWDDALRLLRELEERA--------- 74 (160)
T ss_pred cHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCc--hHHHHHHHHHHHHhCCHHHHHHHHHHHhccC---------
Confidence 34455677777888889999999999999999999994 4466678899999999999999999965532
Q ss_pred chHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHH
Q 024858 103 PTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFM 140 (261)
Q Consensus 103 ~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~ 140 (261)
|.++-+-..++.|+..+|+.+
T Consensus 75 -----------------~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 75 -----------------PGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred -----------------CCChHHHHHHHHHHHHcCChH
Confidence 234556677888888887654
No 256
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.81 E-value=0.0095 Score=42.71 Aligned_cols=44 Identities=20% Similarity=0.227 Sum_probs=33.3
Q ss_pred HHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 142 AEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 142 A~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
.+..++++++.+|++.. .+.||..+...|++++|++.+-.++..
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 35567778888888887 788888888888888888888888876
No 257
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.78 E-value=0.0014 Score=57.56 Aligned_cols=88 Identities=19% Similarity=0.084 Sum_probs=60.6
Q ss_pred hhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHH
Q 024858 4 LVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQI 83 (261)
Q Consensus 4 ~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~ 83 (261)
+.+|+++.|+..|-.+|.++|..+..+..-+.++..+++...||.-|..++.++|+.+...-+ -+.....+|.+++|.
T Consensus 125 ln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykf--rg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKF--RGYAERLLGNWEEAA 202 (377)
T ss_pred hcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccch--hhHHHHHhhchHHHH
Confidence 456777777777777777777777777777777777777777777777777777763322111 233345567777777
Q ss_pred HHHHHHHHhh
Q 024858 84 EMLKRKLRLI 93 (261)
Q Consensus 84 ~~~~~al~l~ 93 (261)
..++.+.++.
T Consensus 203 ~dl~~a~kld 212 (377)
T KOG1308|consen 203 HDLALACKLD 212 (377)
T ss_pred HHHHHHHhcc
Confidence 7777777764
No 258
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=96.74 E-value=0.0026 Score=58.18 Aligned_cols=100 Identities=12% Similarity=-0.051 Sum_probs=72.7
Q ss_pred HHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhc
Q 024858 31 KDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSH 110 (261)
Q Consensus 31 ~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~ 110 (261)
.+-+.....-+.++.|+..|-++++++|+.+.. ...-+..+.+.+.+-.|+.-..+++++.|
T Consensus 8 k~ean~~l~~~~fd~avdlysKaI~ldpnca~~--~anRa~a~lK~e~~~~Al~Da~kaie~dP---------------- 69 (476)
T KOG0376|consen 8 KNEANEALKDKVFDVAVDLYSKAIELDPNCAIY--FANRALAHLKVESFGGALHDALKAIELDP---------------- 69 (476)
T ss_pred hhHHhhhcccchHHHHHHHHHHHHhcCCcceee--echhhhhheeechhhhHHHHHHhhhhcCc----------------
Confidence 344555666788888888888888888874322 21223456688888888888888887643
Q ss_pred hhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh
Q 024858 111 GKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK 158 (261)
Q Consensus 111 ~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~ 158 (261)
....++..-|.+++..+++.+|...|++...+.|+.+.
T Consensus 70 ----------~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~ 107 (476)
T KOG0376|consen 70 ----------TYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPD 107 (476)
T ss_pred ----------hhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHH
Confidence 23345666788888888888888888888888888887
No 259
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.71 E-value=0.15 Score=38.40 Aligned_cols=102 Identities=15% Similarity=0.018 Sum_probs=66.9
Q ss_pred HHHHcCCcHHHHHHHHHHHhc---CCc-h------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchH
Q 024858 36 VMKQLDRSEEAIEAIKSFRGL---CSK-Q------SQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTK 105 (261)
Q Consensus 36 ~~~~~g~~~eAi~~~~~~~~~---~P~-~------~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~ 105 (261)
--.+-|-|++|..-++++... -|. . .+..-+..|+..+...|+|++++..-.++|.... +
T Consensus 18 ~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFN----------R 87 (144)
T PF12968_consen 18 RQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFN----------R 87 (144)
T ss_dssp HHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH----------H
T ss_pred HHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHh----------h
Confidence 345668999999999887643 242 1 2222345688888999999999999999988632 1
Q ss_pred HHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 024858 106 TARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMI 152 (261)
Q Consensus 106 ~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~ 152 (261)
...-|.+.-.+ .-.+.++.|.++...|+.+||+..|+.+-++
T Consensus 88 RGEL~qdeGkl-----WIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 88 RGELHQDEGKL-----WIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp H--TTSTHHHH-----HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred ccccccccchh-----HHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 11111111001 1246789999999999999999999998764
No 260
>PRK10941 hypothetical protein; Provisional
Probab=96.70 E-value=0.022 Score=49.22 Aligned_cols=81 Identities=17% Similarity=0.087 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchhhHHHHHHH
Q 024858 124 RLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEEL 202 (261)
Q Consensus 124 ~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~a~~~ 202 (261)
+.+.||=.+|.+.++++.|+++....+.++|+++. +...|.+|.++|.+..|..-++..+...+.+| ........
T Consensus 182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp----~a~~ik~q 257 (269)
T PRK10941 182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDP----ISEMIRAQ 257 (269)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCch----hHHHHHHH
Confidence 46789999999999999999999999999999998 99999999999999999999999998633222 22345555
Q ss_pred HHHHHh
Q 024858 203 LLELES 208 (261)
Q Consensus 203 l~~l~~ 208 (261)
+.++..
T Consensus 258 l~~l~~ 263 (269)
T PRK10941 258 IHSIEQ 263 (269)
T ss_pred HHHHhh
Confidence 565654
No 261
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.63 E-value=0.044 Score=53.60 Aligned_cols=132 Identities=24% Similarity=0.219 Sum_probs=88.1
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 024858 12 AIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLR 91 (261)
Q Consensus 12 A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~ 91 (261)
....++++.+.+. ..++ ..+.+-.++|-.+||..+|++..+. .+ |-.+|..+|++++|.++-+.-=+
T Consensus 788 gaRAlR~a~q~~~-e~ea--kvAvLAieLgMlEeA~~lYr~ckR~-------DL---lNKlyQs~g~w~eA~eiAE~~DR 854 (1416)
T KOG3617|consen 788 GARALRRAQQNGE-EDEA--KVAVLAIELGMLEEALILYRQCKRY-------DL---LNKLYQSQGMWSEAFEIAETKDR 854 (1416)
T ss_pred hHHHHHHHHhCCc-chhh--HHHHHHHHHhhHHHHHHHHHHHHHH-------HH---HHHHHHhcccHHHHHHHHhhccc
Confidence 3455666766433 3333 3567777889999999999886543 12 55678999999999875544211
Q ss_pred hhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH----------HhhCCCc-----
Q 024858 92 LIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKA----------QMIDPDA----- 156 (261)
Q Consensus 92 l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~a----------l~~~P~~----- 156 (261)
+ | .-..+++.+.-+...++.+.|+++|+|+ |.-+|..
T Consensus 855 i-----------------H-----------Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv 906 (1416)
T KOG3617|consen 855 I-----------------H-----------LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYV 906 (1416)
T ss_pred e-----------------e-----------hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHH
Confidence 1 1 1246778888888888888888888875 2233432
Q ss_pred -----hh-hhhHHHHHHHcCCHHHHHHHHHHHHh
Q 024858 157 -----NK-ACNLGLCLIKRTRYNEARSVLEDVLY 184 (261)
Q Consensus 157 -----~~-~~~L~~~l~~~g~~~eA~~~~~~~l~ 184 (261)
+. |-..|..+...|..+.|+.+|..+-.
T Consensus 907 ~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D 940 (1416)
T KOG3617|consen 907 RRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD 940 (1416)
T ss_pred HhccchHHHHHHHHHHhcccchHHHHHHHHHhhh
Confidence 23 34567888888888888888887655
No 262
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.56 E-value=0.0083 Score=38.49 Aligned_cols=38 Identities=21% Similarity=0.157 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchhhhh
Q 024858 124 RLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKACN 161 (261)
Q Consensus 124 ~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~ 161 (261)
+.++.||..+.+.|+|++|..+...+|+++|+|.....
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~ 39 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQS 39 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 35778899999999999999999999999999987433
No 263
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.53 E-value=0.13 Score=49.20 Aligned_cols=145 Identities=19% Similarity=0.094 Sum_probs=101.3
Q ss_pred hcCCHHHHHHHHHHHHH-------cCCChHHHHHHHHHHHHHcC-----CcHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Q 024858 5 VQKDPEAAIVLFWKAIN-------AGDRVDSALKDMAVVMKQLD-----RSEEAIEAIKSFRGLCSKQSQESLDNVLIDL 72 (261)
Q Consensus 5 ~~~~~~~A~~~~~~al~-------~~p~~~~al~~Lg~~~~~~g-----~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~l 72 (261)
+..|++.|+.+|..+.. .. .+.+...+|.+|.+.. ++..|..+|.++...+..++ ...||.+
T Consensus 261 ~~~d~e~a~~~l~~aa~~~~~~a~~~--~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~~a----~~~lg~~ 334 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAESFKKAATKG--LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNPDA----QYLLGVL 334 (552)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhc--CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCchH----HHHHHHH
Confidence 46789999999999977 33 4557888999998854 56779999999988875533 3346766
Q ss_pred HHHcC---CHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHH----cCCHHHHHHH
Q 024858 73 YKKCG---KVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQ----KTNFMAAEVV 145 (261)
Q Consensus 73 y~~~g---~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~----~g~~~eA~~~ 145 (261)
|..-. ++..|.++|..|-.. .+..+..++|.+|.. ..+...|..+
T Consensus 335 ~~~g~~~~d~~~A~~yy~~Aa~~----------------------------G~~~A~~~la~~y~~G~gv~r~~~~A~~~ 386 (552)
T KOG1550|consen 335 YETGTKERDYRRAFEYYSLAAKA----------------------------GHILAIYRLALCYELGLGVERNLELAFAY 386 (552)
T ss_pred HHcCCccccHHHHHHHHHHHHHc----------------------------CChHHHHHHHHHHHhCCCcCCCHHHHHHH
Confidence 65544 467888888887664 245678888888864 5789999999
Q ss_pred HHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHh
Q 024858 146 YQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLY 184 (261)
Q Consensus 146 ~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~ 184 (261)
|+++.+.++-.+. .......+.. ++++.+.-.+.....
T Consensus 387 ~k~aA~~g~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~ 425 (552)
T KOG1550|consen 387 YKKAAEKGNPSAAYLLGAFYEYGV-GRYDTALALYLYLAE 425 (552)
T ss_pred HHHHHHccChhhHHHHHHHHHHcc-ccccHHHHHHHHHHH
Confidence 9999999833322 2222222333 777777666654433
No 264
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.46 E-value=0.0025 Score=56.05 Aligned_cols=52 Identities=17% Similarity=0.068 Sum_probs=25.1
Q ss_pred HcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 024858 39 QLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRL 92 (261)
Q Consensus 39 ~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l 92 (261)
..|.+++||+.+..++.++|..+ .++.--+.++++.++...||.-|..++++
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a--~l~~kr~sv~lkl~kp~~airD~d~A~ei 177 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLA--ILYAKRASVFLKLKKPNAAIRDCDFAIEI 177 (377)
T ss_pred cCcchhhhhcccccccccCCchh--hhcccccceeeeccCCchhhhhhhhhhcc
Confidence 34555555555555555555422 12222344445555555555555555554
No 265
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.34 E-value=0.55 Score=40.65 Aligned_cols=145 Identities=15% Similarity=0.052 Sum_probs=104.0
Q ss_pred hcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHc----CCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH----c
Q 024858 5 VQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQL----DRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKK----C 76 (261)
Q Consensus 5 ~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~----g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~----~ 76 (261)
..+++..|..++.++-..+ .+.+...++.++... .+..+|+..|+.+....-. .....||.+|.. .
T Consensus 53 ~~~~~~~a~~~~~~a~~~~--~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~----~a~~~lg~~~~~G~gv~ 126 (292)
T COG0790 53 YPPDYAKALKSYEKAAELG--DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLA----EALFNLGLMYANGRGVP 126 (292)
T ss_pred ccccHHHHHHHHHHhhhcC--ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccH----HHHHhHHHHHhcCCCcc
Confidence 4567888999998887632 236777788888554 3578899999866554322 233447777766 4
Q ss_pred CCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHH---HHHHHHHHHHcC-------CHHHHHHHH
Q 024858 77 GKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRL---LGNLAWAYMQKT-------NFMAAEVVY 146 (261)
Q Consensus 77 g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~---~~~Lg~~~~~~g-------~~~eA~~~~ 146 (261)
.+..+|...|+++.+.. ++.+ ..+||.+|..-. +...|+..|
T Consensus 127 ~d~~~A~~~~~~Aa~~g----------------------------~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~ 178 (292)
T COG0790 127 LDLVKALKYYEKAAKLG----------------------------NVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLY 178 (292)
T ss_pred cCHHHHHHHHHHHHHcC----------------------------ChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHH
Confidence 58999999999988762 2223 677777776642 334799999
Q ss_pred HHHHhhCCCchh-hhhHHHHHHHc----CCHHHHHHHHHHHHhC
Q 024858 147 QKAQMIDPDANK-ACNLGLCLIKR----TRYNEARSVLEDVLYG 185 (261)
Q Consensus 147 ~~al~~~P~~~~-~~~L~~~l~~~----g~~~eA~~~~~~~l~~ 185 (261)
+++-... +.. ..+||.+|..- .++.+|..+|+++-..
T Consensus 179 ~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~ 220 (292)
T COG0790 179 RKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQ 220 (292)
T ss_pred HHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC
Confidence 9998876 555 77889887653 3899999999999886
No 266
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.33 E-value=0.14 Score=50.17 Aligned_cols=161 Identities=12% Similarity=0.054 Sum_probs=103.7
Q ss_pred cCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHH
Q 024858 6 QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEM 85 (261)
Q Consensus 6 ~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~ 85 (261)
-|-+++|..+|++-=. +-.|-.+|..+|++.||.++.+.-=++.=. ...++ -+.-+...++.+.|+++
T Consensus 813 LgMlEeA~~lYr~ckR--------~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr---~Tyy~-yA~~Lear~Di~~Aley 880 (1416)
T KOG3617|consen 813 LGMLEEALILYRQCKR--------YDLLNKLYQSQGMWSEAFEIAETKDRIHLR---NTYYN-YAKYLEARRDIEAALEY 880 (1416)
T ss_pred HhhHHHHHHHHHHHHH--------HHHHHHHHHhcccHHHHHHHHhhccceehh---hhHHH-HHHHHHhhccHHHHHHH
Confidence 3567788888876533 445778899999999999987653333222 12233 45556889999999999
Q ss_pred HHHHHHhhcchhhhcCcchHHHhhchhhhhh-hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----------
Q 024858 86 LKRKLRLIYQGEAFNGKPTKTARSHGKKFQV-SVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMID----------- 153 (261)
Q Consensus 86 ~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~-~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~----------- 153 (261)
|+++-.- +++- .+.....++.... .-+..++..|.--|..+..+|+.+.|+.+|..|-...
T Consensus 881 yEK~~~h-----afev--~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk 953 (1416)
T KOG3617|consen 881 YEKAGVH-----AFEV--FRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGK 953 (1416)
T ss_pred HHhcCCh-----HHHH--HHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccC
Confidence 9985321 1110 0000011111110 0011244566677888899999999999999886431
Q ss_pred ----------CCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 154 ----------PDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 154 ----------P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
..+.. -+.||.-|...|++-+|+..|.++-..
T Consensus 954 ~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqaf 996 (1416)
T KOG3617|consen 954 TDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAF 996 (1416)
T ss_pred chHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 12223 468999999999999999999987664
No 267
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.29 E-value=0.14 Score=40.09 Aligned_cols=61 Identities=18% Similarity=0.157 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 024858 29 ALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLR 91 (261)
Q Consensus 29 al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~ 91 (261)
.+.....+-...++.+++...+..+.-+.|+. ..+..+-+.++...|+|+||+.+++...+
T Consensus 12 gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~--~e~d~~dg~l~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 12 GLIEVLMYALRSADPYDAQAMLDALRVLRPNL--KELDMFDGWLLIARGNYDEAARILRELLS 72 (153)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc--cccchhHHHHHHHcCCHHHHHHHHHhhhc
Confidence 34444444445666777777776666666763 23444556666677777777777666544
No 268
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.26 E-value=0.41 Score=44.40 Aligned_cols=165 Identities=13% Similarity=0.051 Sum_probs=115.7
Q ss_pred chhhcCCHHHHHHHHHHHHH---cCCC-------hHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCc-hhHHHHHHHHH
Q 024858 2 VQLVQKDPEAAIVLFWKAIN---AGDR-------VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK-QSQESLDNVLI 70 (261)
Q Consensus 2 ~~~~~~~~~~A~~~~~~al~---~~p~-------~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~-~~~~~~~~~L~ 70 (261)
..++.|++.+|+.-.....+ ..|. .+..+..+|.-....|.+++|...+..+.++-.. +-......+|+
T Consensus 332 c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlA 411 (629)
T KOG2300|consen 332 CRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLA 411 (629)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHH
Confidence 45678999999888877764 4455 3444556788888999999999999998886553 43445567799
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhcch-hhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 024858 71 DLYKKCGKVEEQIEMLKRKLRLIYQG-EAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKA 149 (261)
Q Consensus 71 ~ly~~~g~~~eA~~~~~~al~l~~~~-~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~a 149 (261)
..|...|+-++-.++++.. .|++ ..+.+... -..+++--|...+.++++.||....++.
T Consensus 412 i~YL~~~~~ed~y~~ld~i---~p~nt~s~ssq~l-----------------~a~~~~v~glfaf~qn~lnEaK~~l~e~ 471 (629)
T KOG2300|consen 412 ISYLRIGDAEDLYKALDLI---GPLNTNSLSSQRL-----------------EASILYVYGLFAFKQNDLNEAKRFLRET 471 (629)
T ss_pred HHHHHhccHHHHHHHHHhc---CCCCCCcchHHHH-----------------HHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 9999988876655444432 2221 11110000 1246677788889999999999999999
Q ss_pred HhhCC--Cchh-----hhhHHHHHHHcCCHHHHHHHHHHHHhCC
Q 024858 150 QMIDP--DANK-----ACNLGLCLIKRTRYNEARSVLEDVLYGR 186 (261)
Q Consensus 150 l~~~P--~~~~-----~~~L~~~l~~~g~~~eA~~~~~~~l~~~ 186 (261)
|++.. |... ..-||.+....|+..|+....+-++...
T Consensus 472 Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlA 515 (629)
T KOG2300|consen 472 LKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLA 515 (629)
T ss_pred HhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHH
Confidence 99862 1111 2347888889999999999988777753
No 269
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.12 E-value=0.14 Score=40.57 Aligned_cols=86 Identities=16% Similarity=0.163 Sum_probs=66.5
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 024858 72 LYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQM 151 (261)
Q Consensus 72 ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~ 151 (261)
+-...++.+++..++.-+-- +.|+++++-..-|+++...|++.+|+..++.+..
T Consensus 19 ~al~~~~~~D~e~lL~ALrv--------------------------LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDALRV--------------------------LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HHHccCChHHHHHHHHHHHH--------------------------hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 33567788888877766433 3577888999999999999999999999999988
Q ss_pred hCCCchh-hhhHHHHHHHcCCHHHHHHHH-HHHHhC
Q 024858 152 IDPDANK-ACNLGLCLIKRTRYNEARSVL-EDVLYG 185 (261)
Q Consensus 152 ~~P~~~~-~~~L~~~l~~~g~~~eA~~~~-~~~l~~ 185 (261)
..|..+. .-.++.||..+|+.+ .+.| .+++..
T Consensus 73 ~~~~~p~~kALlA~CL~~~~D~~--Wr~~A~evle~ 106 (160)
T PF09613_consen 73 RAPGFPYAKALLALCLYALGDPS--WRRYADEVLES 106 (160)
T ss_pred cCCCChHHHHHHHHHHHHcCChH--HHHHHHHHHhc
Confidence 8888887 667899998888754 3333 345553
No 270
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.99 E-value=0.01 Score=31.96 Aligned_cols=31 Identities=23% Similarity=0.206 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHhcCCc
Q 024858 29 ALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK 59 (261)
Q Consensus 29 al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~ 59 (261)
++..+|.++..+|++++|+..++++++..|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4556666666666666666666666666553
No 271
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=95.94 E-value=0.029 Score=48.97 Aligned_cols=61 Identities=13% Similarity=0.047 Sum_probs=48.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 024858 127 GNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRI 187 (261)
Q Consensus 127 ~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~~ 187 (261)
.+.+.-....|+.++|...|.-|+.++|++++ ...+|.+.....+.-+|-.+|-+++..++
T Consensus 120 l~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP 181 (472)
T KOG3824|consen 120 LKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISP 181 (472)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCC
Confidence 34455556788888888888888888888888 78888888888888888888888888743
No 272
>PRK10941 hypothetical protein; Provisional
Probab=95.86 E-value=0.076 Score=45.97 Aligned_cols=56 Identities=18% Similarity=0.231 Sum_probs=28.0
Q ss_pred hhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCc
Q 024858 4 LVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK 59 (261)
Q Consensus 4 ~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~ 59 (261)
+.+++++.|..+.+..+..+|+.+.-+..-|.+|.+.|.+..|..-++..+..+|+
T Consensus 192 ~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~ 247 (269)
T PRK10941 192 MEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPE 247 (269)
T ss_pred HHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC
Confidence 34445555555555555555555544444555555555555555555555555544
No 273
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=95.83 E-value=0.027 Score=53.04 Aligned_cols=88 Identities=15% Similarity=0.143 Sum_probs=76.1
Q ss_pred hcCCHHHHHHHHHHHHHcCCChHH-HHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHH
Q 024858 5 VQKDPEAAIVLFWKAINAGDRVDS-ALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQI 83 (261)
Q Consensus 5 ~~~~~~~A~~~~~~al~~~p~~~~-al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~ 83 (261)
+.|+...|++++..|+...|.... .+.+|+.++..-|-..+|-..+.+++.+....+ .....+|+.|....+.+.|+
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sep--l~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEP--LTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCc--hHHHhcchhHHHHhhhHHHH
Confidence 579999999999999998886543 488999999999999999999999999875533 23566899999999999999
Q ss_pred HHHHHHHHhhc
Q 024858 84 EMLKRKLRLIY 94 (261)
Q Consensus 84 ~~~~~al~l~~ 94 (261)
+.+++++++.+
T Consensus 697 ~~~~~a~~~~~ 707 (886)
T KOG4507|consen 697 EAFRQALKLTT 707 (886)
T ss_pred HHHHHHHhcCC
Confidence 99999999865
No 274
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.81 E-value=0.63 Score=44.57 Aligned_cols=141 Identities=16% Similarity=0.076 Sum_probs=105.6
Q ss_pred CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHc-----CCcHHHHHHHHHHHh-------cC-CchhHHHHHHHHHHHHH
Q 024858 8 DPEAAIVLFWKAINAGDRVDSALKDMAVVMKQL-----DRSEEAIEAIKSFRG-------LC-SKQSQESLDNVLIDLYK 74 (261)
Q Consensus 8 ~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~-----g~~~eAi~~~~~~~~-------~~-P~~~~~~~~~~L~~ly~ 74 (261)
+...|..+|+.+... .+..+...+|.++..- .+.+.|+..++.+.. .. |. ..+-+|.+|.
T Consensus 227 ~~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~-----a~~~lg~~Y~ 299 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPP-----AQYGLGRLYL 299 (552)
T ss_pred hhhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCc-----cccHHHHHHh
Confidence 356788999888664 5666778888888554 588899998887765 22 22 2334777777
Q ss_pred HcC-----CHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcC---CHHHHHHHH
Q 024858 75 KCG-----KVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKT---NFMAAEVVY 146 (261)
Q Consensus 75 ~~g-----~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g---~~~eA~~~~ 146 (261)
+.. +++.|..+|.++-.. +++++.+.||.+|.... ++..|..+|
T Consensus 300 ~g~~~~~~d~~~A~~~~~~aA~~----------------------------g~~~a~~~lg~~~~~g~~~~d~~~A~~yy 351 (552)
T KOG1550|consen 300 QGLGVEKIDYEKALKLYTKAAEL----------------------------GNPDAQYLLGVLYETGTKERDYRRAFEYY 351 (552)
T ss_pred cCCCCccccHHHHHHHHHHHHhc----------------------------CCchHHHHHHHHHHcCCccccHHHHHHHH
Confidence 743 677889888888775 35678899999998776 678999999
Q ss_pred HHHHhhCCCchh-hhhHHHHHHHc----CCHHHHHHHHHHHHhC
Q 024858 147 QKAQMIDPDANK-ACNLGLCLIKR----TRYNEARSVLEDVLYG 185 (261)
Q Consensus 147 ~~al~~~P~~~~-~~~L~~~l~~~----g~~~eA~~~~~~~l~~ 185 (261)
..|... .+.. .++++.||..- -+.+.|..+|+++...
T Consensus 352 ~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~ 393 (552)
T KOG1550|consen 352 SLAAKA--GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEK 393 (552)
T ss_pred HHHHHc--CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHc
Confidence 999765 4455 67788877543 4899999999999886
No 275
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.68 E-value=0.023 Score=47.59 Aligned_cols=58 Identities=16% Similarity=0.107 Sum_probs=53.8
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCch
Q 024858 3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ 60 (261)
Q Consensus 3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~ 60 (261)
....+|.+.|.++|.+++.+.|.....|+.+|......|+.+.|.+.|++.++++|.+
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 3457889999999999999999999999999999999999999999999999999974
No 276
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=95.67 E-value=1.4 Score=39.03 Aligned_cols=146 Identities=12% Similarity=-0.002 Sum_probs=94.1
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHcCC------------cHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHH
Q 024858 14 VLFWKAINAGDRVDSALKDMAVVMKQLDR------------SEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEE 81 (261)
Q Consensus 14 ~~~~~al~~~p~~~~al~~Lg~~~~~~g~------------~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~e 81 (261)
.-|.+.++.+|.+.++|..+...--..-. .+..+.+|++|++.+|++ ..+...+..++.+....++
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~--~~L~l~~l~~~~~~~~~~~ 83 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDS--ERLLLGYLEEGEKVWDSEK 83 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhCCHHH
Confidence 45778899999999999887654433222 345567899999999973 4455445567778888888
Q ss_pred HHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHH-HHHHHH--HcCCHHHHHHHHHHHHhhCC----
Q 024858 82 QIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGN-LAWAYM--QKTNFMAAEVVYQKAQMIDP---- 154 (261)
Q Consensus 82 A~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~-Lg~~~~--~~g~~~eA~~~~~~al~~~P---- 154 (261)
...-+++++...| +...+|.. |-.... ..-.+++-...|.+++..-.
T Consensus 84 l~~~we~~l~~~~--------------------------~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~ 137 (321)
T PF08424_consen 84 LAKKWEELLFKNP--------------------------GSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRS 137 (321)
T ss_pred HHHHHHHHHHHCC--------------------------CChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhc
Confidence 8888888888643 22333332 111111 12234455555555554211
Q ss_pred ---------Cch-----h-hhhHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 024858 155 ---------DAN-----K-ACNLGLCLIKRTRYNEARSVLEDVLYGRI 187 (261)
Q Consensus 155 ---------~~~-----~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~~ 187 (261)
... . ...+...+...|-.+.|+..++..++.+.
T Consensus 138 ~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 138 GRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred cccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 011 1 24677888889999999999999999753
No 277
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=95.64 E-value=0.026 Score=33.36 Aligned_cols=27 Identities=33% Similarity=0.592 Sum_probs=16.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 024858 67 NVLIDLYKKCGKVEEQIEMLKRKLRLI 93 (261)
Q Consensus 67 ~~L~~ly~~~g~~~eA~~~~~~al~l~ 93 (261)
+.||.+|..+|++++|+.++++++++.
T Consensus 6 ~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 6 NNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 346666666666666666666666654
No 278
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=95.59 E-value=0.35 Score=45.71 Aligned_cols=138 Identities=16% Similarity=0.071 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHcCCChHHHHHH--HHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 024858 10 EAAIVLFWKAINAGDRVDSALKD--MAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLK 87 (261)
Q Consensus 10 ~~A~~~~~~al~~~p~~~~al~~--Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~ 87 (261)
.-++.++..-+..+|.+++.+.. +.+.+...++...++...+..+..+|+++ ....+|+..+...|....++..+.
T Consensus 48 ~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~L~~ale~~~~~~~~~~~~~ 125 (620)
T COG3914 48 ALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENC--PAVQNLAAALELDGLQFLALADIS 125 (620)
T ss_pred hHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccc--hHHHHHHHHHHHhhhHHHHHHHHH
Confidence 33666666666788888876443 47778888999999999999999999853 344556666666676666665555
Q ss_pred H-HHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHH
Q 024858 88 R-KLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLC 165 (261)
Q Consensus 88 ~-al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~ 165 (261)
+ +....|....+.+ | -...+. +|......|+..++.....+++.+.|+++. ...+...
T Consensus 126 ~~a~~~~~~~~~~~~--------~-----------~~~~~~-~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 126 EIAEWLSPDNAEFLG--------H-----------LIRFYQ-LGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred HHHHhcCcchHHHHh--------h-----------HHHHHH-HHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 4 5554331110000 0 012233 699999999999999999999999999976 5555444
Q ss_pred HHHc
Q 024858 166 LIKR 169 (261)
Q Consensus 166 l~~~ 169 (261)
..++
T Consensus 186 r~~~ 189 (620)
T COG3914 186 RQEQ 189 (620)
T ss_pred HHHh
Confidence 4443
No 279
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.59 E-value=0.23 Score=40.16 Aligned_cols=109 Identities=18% Similarity=0.222 Sum_probs=79.2
Q ss_pred hHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcch
Q 024858 26 VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK-QSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPT 104 (261)
Q Consensus 26 ~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~-~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~ 104 (261)
.-.++..+|..|.+.|+.++|++.|.++...... .........+..+....|++........++-.+...+...
T Consensus 35 ir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~----- 109 (177)
T PF10602_consen 35 IRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDW----- 109 (177)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchH-----
Confidence 4567889999999999999999999998876643 2233455567788889999999999999987764311000
Q ss_pred HHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 024858 105 KTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDP 154 (261)
Q Consensus 105 ~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P 154 (261)
. . .......-|..++.+|+|.+|...|-.++.-..
T Consensus 110 ~------~---------~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~~ 144 (177)
T PF10602_consen 110 E------R---------RNRLKVYEGLANLAQRDFKEAAELFLDSLSTFT 144 (177)
T ss_pred H------H---------HHHHHHHHHHHHHHhchHHHHHHHHHccCcCCC
Confidence 0 0 012344567788889999999999988765443
No 280
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=95.49 E-value=0.018 Score=30.95 Aligned_cols=24 Identities=25% Similarity=0.134 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH
Q 024858 124 RLLGNLAWAYMQKTNFMAAEVVYQ 147 (261)
Q Consensus 124 ~~~~~Lg~~~~~~g~~~eA~~~~~ 147 (261)
.++.+||.++..+|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 356777888888888888877765
No 281
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=95.43 E-value=0.059 Score=31.56 Aligned_cols=33 Identities=24% Similarity=0.256 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHH--HHHHHhhCCCc
Q 024858 124 RLLGNLAWAYMQKTNFMAAEVV--YQKAQMIDPDA 156 (261)
Q Consensus 124 ~~~~~Lg~~~~~~g~~~eA~~~--~~~al~~~P~~ 156 (261)
+.+..+|..+.++|++++|+.. |+-+..++|.|
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 4677889999999999999999 66888888764
No 282
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=95.38 E-value=0.46 Score=39.73 Aligned_cols=112 Identities=19% Similarity=0.179 Sum_probs=72.1
Q ss_pred HcCCcHHHHHHHHHHHh----cCCc-hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhh
Q 024858 39 QLDRSEEAIEAIKSFRG----LCSK-QSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKK 113 (261)
Q Consensus 39 ~~g~~~eAi~~~~~~~~----~~P~-~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~ 113 (261)
..-.+++|++.|.-++- ...+ .-...+..-++.+|...|+.+.....+++|++.... ++. ...
T Consensus 89 ~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~--a~~--------~e~-- 156 (214)
T PF09986_consen 89 GERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEE--AYE--------NED-- 156 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHH--HHH--------hCc--
Confidence 34567888887776542 1112 112334566899999999999999999998887421 110 000
Q ss_pred hhhhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch-h-hhhHHH
Q 024858 114 FQVSVRQ-ETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN-K-ACNLGL 164 (261)
Q Consensus 114 ~~~~l~p-~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~-~-~~~L~~ 164 (261)
+ -+.+ +...+.+.+|.+..+.|++++|...|.+++...-.+. . ..+++.
T Consensus 157 ~--~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR 208 (214)
T PF09986_consen 157 F--PIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMAR 208 (214)
T ss_pred C--CCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHHH
Confidence 0 0000 1234778899999999999999999999998654444 2 445544
No 283
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=95.26 E-value=0.037 Score=48.37 Aligned_cols=62 Identities=23% Similarity=0.365 Sum_probs=52.6
Q ss_pred HHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 024858 74 KKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMID 153 (261)
Q Consensus 74 ~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~ 153 (261)
.+.|+.++|..+++.++++ .|.+++++..+|......++.-+|-.+|-+||.++
T Consensus 127 ~~~Gk~ekA~~lfeHAlal--------------------------aP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtis 180 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALAL--------------------------APTNPQILIEMGQFREMHNEIVEADQCYVKALTIS 180 (472)
T ss_pred HhccchHHHHHHHHHHHhc--------------------------CCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeC
Confidence 5667777777777777776 46789999999999999999999999999999999
Q ss_pred CCchh-hhh
Q 024858 154 PDANK-ACN 161 (261)
Q Consensus 154 P~~~~-~~~ 161 (261)
|.|.. ..|
T Consensus 181 P~nseALvn 189 (472)
T KOG3824|consen 181 PGNSEALVN 189 (472)
T ss_pred CCchHHHhh
Confidence 99986 544
No 284
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=95.05 E-value=0.058 Score=33.12 Aligned_cols=41 Identities=32% Similarity=0.425 Sum_probs=28.7
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchhhHHHHHHHHHH
Q 024858 160 CNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELLLE 205 (261)
Q Consensus 160 ~~L~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~a~~~l~~ 205 (261)
++|+.+|+++|+.+.|...+++++.. +++ .....|..++..
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~---~~~--~q~~eA~~LL~~ 43 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEE---GDE--AQRQEARALLAQ 43 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHc---CCH--HHHHHHHHHHhc
Confidence 57888899999999999999988864 222 223456666543
No 285
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=94.83 E-value=0.14 Score=36.76 Aligned_cols=68 Identities=16% Similarity=0.129 Sum_probs=48.6
Q ss_pred HHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 024858 74 KKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMID 153 (261)
Q Consensus 74 ~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~ 153 (261)
.+.|++.+|++.+.+.+.......... ... ....++.++|.++...|++++|+..+++|+.+-
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~---------~~~--------~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSS---------SNS--------GLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccch---------hhH--------HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 578999999999999887632110000 000 123478899999999999999999999999986
Q ss_pred CCchh
Q 024858 154 PDANK 158 (261)
Q Consensus 154 P~~~~ 158 (261)
....+
T Consensus 72 re~~D 76 (94)
T PF12862_consen 72 RENGD 76 (94)
T ss_pred HHHCC
Confidence 65544
No 286
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.72 E-value=0.17 Score=46.86 Aligned_cols=128 Identities=17% Similarity=0.115 Sum_probs=83.5
Q ss_pred HHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhh
Q 024858 37 MKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQV 116 (261)
Q Consensus 37 ~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~ 116 (261)
|.+.....-+..-.+.+.....+.+ . ...+-+.++...|++.+|.+.+...=--..+| -
T Consensus 216 llq~~~Lk~~krevK~vmn~a~~s~-~-~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g-------------------~ 274 (696)
T KOG2471|consen 216 LLQTRNLKLAKREVKHVMNIAQDSS-M-ALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAG-------------------G 274 (696)
T ss_pred HHHHHHHHHHHHhhhhhhhhcCCCc-H-HHHHHHHHHHHhcchHHHHHHHHhcccccccC-------------------c
Confidence 3455555555555555544433322 2 23345677788899999887665521100100 0
Q ss_pred hcCCCcHH--HHHHHHHHHHHcCCHHHHHHHHHHHHh---------hCCC-------c--hh-hhhHHHHHHHcCCHHHH
Q 024858 117 SVRQETSR--LLGNLAWAYMQKTNFMAAEVVYQKAQM---------IDPD-------A--NK-ACNLGLCLIKRTRYNEA 175 (261)
Q Consensus 117 ~l~p~~~~--~~~~Lg~~~~~~g~~~eA~~~~~~al~---------~~P~-------~--~~-~~~L~~~l~~~g~~~eA 175 (261)
.+.|+-.. .|+|||.++.+.|.|.-+..+|.+||. +.|. + -. .+|.|..|...||.-.|
T Consensus 275 ~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~A 354 (696)
T KOG2471|consen 275 TITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLA 354 (696)
T ss_pred cccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHH
Confidence 11122222 568999999999999999999999996 1221 1 13 58999999999999999
Q ss_pred HHHHHHHHhC
Q 024858 176 RSVLEDVLYG 185 (261)
Q Consensus 176 ~~~~~~~l~~ 185 (261)
.+.|.+++..
T Consensus 355 fqCf~~av~v 364 (696)
T KOG2471|consen 355 FQCFQKAVHV 364 (696)
T ss_pred HHHHHHHHHH
Confidence 9999999885
No 287
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=94.64 E-value=0.15 Score=36.64 Aligned_cols=72 Identities=19% Similarity=0.120 Sum_probs=51.7
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCch---------h-hhhHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchhhHHHHHHHH
Q 024858 134 MQKTNFMAAEVVYQKAQMIDPDAN---------K-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELL 203 (261)
Q Consensus 134 ~~~g~~~eA~~~~~~al~~~P~~~---------~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~a~~~l 203 (261)
.+.|+|.+|++.+.+.+....... . ..++|.+....|++++|+..+++++... ....+......+...+
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A-re~~D~~~l~~al~~~ 87 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA-RENGDRRCLAYALSWL 87 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-HHHCCHHHHHHHHHHH
Confidence 578999999999999887643221 2 4689999999999999999999999962 2233334444455444
Q ss_pred HHH
Q 024858 204 LEL 206 (261)
Q Consensus 204 ~~l 206 (261)
..+
T Consensus 88 ~~l 90 (94)
T PF12862_consen 88 ANL 90 (94)
T ss_pred HHH
Confidence 444
No 288
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.48 E-value=0.1 Score=40.83 Aligned_cols=74 Identities=15% Similarity=0.146 Sum_probs=59.0
Q ss_pred HHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 024858 74 KKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMID 153 (261)
Q Consensus 74 ~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~ 153 (261)
...++++++..++...=- +.|+.+++-.--|+++...|+++||+..++...+-.
T Consensus 21 L~~~d~~D~e~lLdALrv--------------------------LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRV--------------------------LRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HhcCCHHHHHHHHHHHHH--------------------------hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 346777777776665322 356778888889999999999999999999998887
Q ss_pred CCchh-hhhHHHHHHHcCCHH
Q 024858 154 PDANK-ACNLGLCLIKRTRYN 173 (261)
Q Consensus 154 P~~~~-~~~L~~~l~~~g~~~ 173 (261)
|..+. .-.++.|+..+|+.+
T Consensus 75 ~~~p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 75 GAPPYGKALLALCLNAKGDAE 95 (153)
T ss_pred CCchHHHHHHHHHHHhcCChH
Confidence 77776 667789998888764
No 289
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=94.37 E-value=5.5 Score=39.73 Aligned_cols=179 Identities=14% Similarity=0.093 Sum_probs=112.2
Q ss_pred hhcCCHHHHHHHHHHHHHcCC--C-------hHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCch---hHHHHHHHHHH
Q 024858 4 LVQKDPEAAIVLFWKAINAGD--R-------VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ---SQESLDNVLID 71 (261)
Q Consensus 4 ~~~~~~~~A~~~~~~al~~~p--~-------~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~---~~~~~~~~L~~ 71 (261)
..+.++++|..+..++-..=| + .++....-|.+...+|+.++|++..+.++..-|.+ .......+++.
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 456788888888888765222 1 23334446888899999999999999999887763 12234466788
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhcchhhhc------CcchHHHhhch--------hhhh------hhcCCCcHH---HHHH
Q 024858 72 LYKKCGKVEEQIEMLKRKLRLIYQGEAFN------GKPTKTARSHG--------KKFQ------VSVRQETSR---LLGN 128 (261)
Q Consensus 72 ly~~~g~~~eA~~~~~~al~l~~~~~~~~------~~~~~~~~~~~--------~~~~------~~l~p~~~~---~~~~ 128 (261)
+..-.|++++|..+.+++.++.-.-+.+. .........+| +.+. +.-+|-+.- ++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 88899999999999999988742111110 00001111111 0111 111122111 2333
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC----CCch--h--hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 129 LAWAYMQKTNFMAAEVVYQKAQMID----PDAN--K--ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 129 Lg~~~~~~g~~~eA~~~~~~al~~~----P~~~--~--~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
+.+++.+ ++++..-.++.+++- |... . .++|+.+....|++++|.....++...
T Consensus 586 ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l 647 (894)
T COG2909 586 LLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERL 647 (894)
T ss_pred HHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 4444443 777777777777653 3322 2 238899999999999999999887774
No 290
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=94.35 E-value=0.23 Score=46.10 Aligned_cols=130 Identities=15% Similarity=0.150 Sum_probs=90.6
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHHcCCHHH
Q 024858 3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLC-SKQSQESLDNVLIDLYKKCGKVEE 81 (261)
Q Consensus 3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~-P~~~~~~~~~~L~~ly~~~g~~~e 81 (261)
++-.||.-.|-.-...++...|..|......+.+....|.|+.+.+.+..+-+.- ..+ ..... +-.-..+.||+++
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~--~~~~~-~~r~~~~l~r~~~ 375 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTD--STLRC-RLRSLHGLARWRE 375 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCc--hHHHH-HHHhhhchhhHHH
Confidence 4567888888888888999899999888888999999999999998876543322 221 11222 3333477899999
Q ss_pred HHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hh
Q 024858 82 QIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-AC 160 (261)
Q Consensus 82 A~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~ 160 (261)
|...-.-.|.- + -++++++.--+..-.+.|-+++|...+++.+.++|.... |.
T Consensus 376 a~s~a~~~l~~-e-------------------------ie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v 429 (831)
T PRK15180 376 ALSTAEMMLSN-E-------------------------IEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWV 429 (831)
T ss_pred HHHHHHHHhcc-c-------------------------cCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccce
Confidence 98765554432 1 023444444455556778899999999999999986554 54
Q ss_pred h
Q 024858 161 N 161 (261)
Q Consensus 161 ~ 161 (261)
|
T Consensus 430 ~ 430 (831)
T PRK15180 430 N 430 (831)
T ss_pred e
Confidence 3
No 291
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=94.20 E-value=3.8 Score=36.36 Aligned_cols=137 Identities=11% Similarity=-0.014 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH--HcCCHHHHHHHH
Q 024858 9 PEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYK--KCGKVEEQIEML 86 (261)
Q Consensus 9 ~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~--~~g~~~eA~~~~ 86 (261)
.+.-+..|++|++.+|+....+..+=....+....++..+..++++..+|++... +...|-.... ..-.+++....|
T Consensus 47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~L-W~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPEL-WREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHH-HHHHHHHHHHHhccCcHHHHHHHH
Confidence 3456789999999999999888777777778888888889999999999985322 2211221111 234688999999
Q ss_pred HHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 024858 87 KRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDP 154 (261)
Q Consensus 87 ~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P 154 (261)
.++|.......... ...+..... ++-....+...+...+.+.|-.+.|+..++-.++++=
T Consensus 126 ~~~l~~L~~~~~~~------~~~~~~~~~--~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 126 EKCLRALSRRRSGR------MTSHPDLPE--LEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHhhccc------cccccchhh--HHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 99988632110000 000000000 0001234677889999999999999999999999863
No 292
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=94.16 E-value=0.48 Score=48.62 Aligned_cols=164 Identities=16% Similarity=0.071 Sum_probs=112.5
Q ss_pred hhhcCCHHHHHH------HHHHHH-HcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHH-------HhcCCchhHHHHHHH
Q 024858 3 QLVQKDPEAAIV------LFWKAI-NAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSF-------RGLCSKQSQESLDNV 68 (261)
Q Consensus 3 ~~~~~~~~~A~~------~~~~al-~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~-------~~~~P~~~~~~~~~~ 68 (261)
++.++.+.+|.. ++.... .+.|.....+..|+.++...|++++|+..-.++ +..++.+-.. ....
T Consensus 942 ~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~-~y~n 1020 (1236)
T KOG1839|consen 942 ALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKL-AYGN 1020 (1236)
T ss_pred hhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHH-HhhH
Confidence 455677776666 555444 367889999999999999999999999876544 4444432111 2233
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 024858 69 LIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQK 148 (261)
Q Consensus 69 L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~ 148 (261)
++......+....|...+.+++++.. -..+ ..-|..+.+-.|++.++...++++-|+.+.+.
T Consensus 1021 lal~~f~~~~~~~al~~~~ra~~l~~-------------Ls~g-----e~hP~~a~~~~nle~l~~~v~e~d~al~~le~ 1082 (1236)
T KOG1839|consen 1021 LALYEFAVKNLSGALKSLNRALKLKL-------------LSSG-----EDHPPTALSFINLELLLLGVEEADTALRYLES 1082 (1236)
T ss_pred HHHHHHhccCccchhhhHHHHHHhhc-------------cccC-----CCCCchhhhhhHHHHHHhhHHHHHHHHHHHHH
Confidence 66666778888888888888887631 0001 12245556778999999999999999999999
Q ss_pred HHhhC-----CCch---h-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 149 AQMID-----PDAN---K-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 149 al~~~-----P~~~---~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
|++.. |... . ...++.....+|++..|....+.....
T Consensus 1083 A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1083 ALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred HHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence 99864 2222 2 345677777777777777666655443
No 293
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=94.11 E-value=0.28 Score=31.40 Aligned_cols=33 Identities=15% Similarity=0.100 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCch
Q 024858 28 SALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ 60 (261)
Q Consensus 28 ~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~ 60 (261)
+.++.+|+.+..+|+|.+|...++.+++..|++
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N 34 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDN 34 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCc
Confidence 457889999999999999999999999999984
No 294
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=94.02 E-value=4.5 Score=36.57 Aligned_cols=141 Identities=11% Similarity=0.037 Sum_probs=92.2
Q ss_pred HcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc--------------CCc---------hh-HHHH---HHHHHHHH
Q 024858 21 NAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGL--------------CSK---------QS-QESL---DNVLIDLY 73 (261)
Q Consensus 21 ~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~--------------~P~---------~~-~~~~---~~~L~~ly 73 (261)
...|-+.+++..++.++.++|++..|.+++++++=. ++. .. +... .......+
T Consensus 34 ~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L 113 (360)
T PF04910_consen 34 QKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSL 113 (360)
T ss_pred HHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHH
Confidence 456778999999999999999999999988877311 110 00 1111 11233556
Q ss_pred HHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 024858 74 KKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMID 153 (261)
Q Consensus 74 ~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~ 153 (261)
.+.|-+.-|.+..+-.+.++|.++.+ -++..+-..-.+.++|+==+..++......
T Consensus 114 ~~RG~~rTAlE~~KlLlsLdp~~DP~------------------------g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~ 169 (360)
T PF04910_consen 114 GRRGCWRTALEWCKLLLSLDPDEDPL------------------------GVLLFIDYYALRSRQYQWLIDFSESPLAKC 169 (360)
T ss_pred HhcCcHHHHHHHHHHHHhcCCCCCcc------------------------hhHHHHHHHHHhcCCHHHHHHHHHhHhhhh
Confidence 78888888888888888887632211 134444444466677766666666655421
Q ss_pred CC-----chh-hhhHHHHHHHcCCH---------------HHHHHHHHHHHhC
Q 024858 154 PD-----ANK-ACNLGLCLIKRTRY---------------NEARSVLEDVLYG 185 (261)
Q Consensus 154 P~-----~~~-~~~L~~~l~~~g~~---------------~eA~~~~~~~l~~ 185 (261)
.. -+. .+..+.++...++. ++|...+++++..
T Consensus 170 ~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~ 222 (360)
T PF04910_consen 170 YRNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILR 222 (360)
T ss_pred hhhhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHH
Confidence 11 123 56677777778887 8899999888886
No 295
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=93.98 E-value=0.7 Score=40.95 Aligned_cols=106 Identities=13% Similarity=0.024 Sum_probs=80.2
Q ss_pred hHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcC-Cc-hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcc
Q 024858 26 VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLC-SK-QSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKP 103 (261)
Q Consensus 26 ~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~-P~-~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~ 103 (261)
.+.-+..-|.-|...++|..|+..|.+.++.. ++ +.+..++++-+.+-.-.|.|..|+.-..+++.+.
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~---------- 149 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLK---------- 149 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcC----------
Confidence 45556778999999999999999999988743 33 3344566666666677789999998888888874
Q ss_pred hHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch
Q 024858 104 TKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN 157 (261)
Q Consensus 104 ~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~ 157 (261)
|.+..++..=+.|+.++.++++|.......+.++-+..
T Consensus 150 ----------------P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~K 187 (390)
T KOG0551|consen 150 ----------------PTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDEAK 187 (390)
T ss_pred ----------------cchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 34556777778888888888888888887777655443
No 296
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.70 E-value=0.97 Score=36.55 Aligned_cols=99 Identities=20% Similarity=0.184 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 024858 64 SLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAE 143 (261)
Q Consensus 64 ~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~ 143 (261)
....-+|+.|.+.|+.++|++.|.++....- .-+. .-+++.++-.+....|++....
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~--------------~~~~---------~id~~l~~irv~i~~~d~~~v~ 93 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCT--------------SPGH---------KIDMCLNVIRVAIFFGDWSHVE 93 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcC--------------CHHH---------HHHHHHHHHHHHHHhCCHHHHH
Confidence 3456689999999999999999999766421 0011 1257788888999999999999
Q ss_pred HHHHHHHhhCCC--chh-----hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 144 VVYQKAQMIDPD--ANK-----ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 144 ~~~~~al~~~P~--~~~-----~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
.+..+|-.+-.. +.. ...-|..++.+++|.+|...|-.+...
T Consensus 94 ~~i~ka~~~~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 94 KYIEKAESLIEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcC
Confidence 999998876443 222 234588889999999999999887664
No 297
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.61 E-value=0.73 Score=40.06 Aligned_cols=62 Identities=16% Similarity=0.038 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHh
Q 024858 123 SRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLY 184 (261)
Q Consensus 123 ~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~ 184 (261)
-.++..++..+...|+++.++..+++.+.++|-+.. |..|-.+|...|+...|+..|+++-.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 457888999999999999999999999999999999 99999999999999999999998766
No 298
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.58 E-value=3.8 Score=35.60 Aligned_cols=209 Identities=15% Similarity=0.194 Sum_probs=108.4
Q ss_pred hcCCHHHHHHHHHHHHHcCCChH----HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCC-----chhHHHHHHHHHHHHHH
Q 024858 5 VQKDPEAAIVLFWKAINAGDRVD----SALKDMAVVMKQLDRSEEAIEAIKSFRGLCS-----KQSQESLDNVLIDLYKK 75 (261)
Q Consensus 5 ~~~~~~~A~~~~~~al~~~p~~~----~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P-----~~~~~~~~~~L~~ly~~ 75 (261)
.+.++++|+..|++++.+.+... .|+..+-.+...+|+++|-...|++.+..-. +...-.+.++|- .-..
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlD-yiSt 117 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILD-YIST 117 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHH-HHhh
Confidence 45566777777777777665543 3455566666777777776666655432110 111112222221 1123
Q ss_pred cCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHH----HHHHHHHHHcCCHHHHHHHHHHHHh
Q 024858 76 CGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLL----GNLAWAYMQKTNFMAAEVVYQKAQM 151 (261)
Q Consensus 76 ~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~----~~Lg~~~~~~g~~~eA~~~~~~al~ 151 (261)
..+.+---+.|+..|..-. +..+.+.| .-||.+|...|.|..-.+.+++.-.
T Consensus 118 S~~m~LLQ~FYeTTL~ALk------------------------dAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~ 173 (440)
T KOG1464|consen 118 SKNMDLLQEFYETTLDALK------------------------DAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQ 173 (440)
T ss_pred hhhhHHHHHHHHHHHHHHH------------------------hhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHH
Confidence 3333333444444333210 00122333 3488888888888777766665432
Q ss_pred -hCCCch----h-------hhhH-HHHHHHcCCHHHHHHHHHHHHhCCCCCCcchhhHHHHHHHHHHHHhcCCCCchhhh
Q 024858 152 -IDPDAN----K-------ACNL-GLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELLLELESKQPPPDLSDL 218 (261)
Q Consensus 152 -~~P~~~----~-------~~~L-~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~ 218 (261)
+..++. . .+.| -..|-.+.+-..-..+|++++... ...+||. ..-..++|++...-.+-.+.
T Consensus 174 SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiK-SAIPHPl----ImGvIRECGGKMHlreg~fe 248 (440)
T KOG1464|consen 174 SCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIK-SAIPHPL----IMGVIRECGGKMHLREGEFE 248 (440)
T ss_pred HhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhh-ccCCchH----HHhHHHHcCCccccccchHH
Confidence 111111 1 1223 335666777777788899988862 2334554 56667777764432222222
Q ss_pred cccchhHHHHHHHHHHHHhhccCCCCCc
Q 024858 219 LGLNLEDEFVNGLEEMVRVWAPSRSKRL 246 (261)
Q Consensus 219 ~~~~~~d~~~~~~~~~l~~~~~~~~~~~ 246 (261)
-+ ..+|-++|.++-..-.|-|..|+
T Consensus 249 ~A---hTDFFEAFKNYDEsGspRRttCL 273 (440)
T KOG1464|consen 249 KA---HTDFFEAFKNYDESGSPRRTTCL 273 (440)
T ss_pred HH---HhHHHHHHhcccccCCcchhHHH
Confidence 22 36788888887432224555555
No 299
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.50 E-value=0.76 Score=44.05 Aligned_cols=100 Identities=19% Similarity=0.210 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 024858 65 LDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEV 144 (261)
Q Consensus 65 ~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~ 144 (261)
+++. +.-..+..+|..+++.|...++-++.++ ++ -.++....+|..||....+.|.|.+
T Consensus 357 LWn~-A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~-~~-------------------~~FaK~qR~l~~CYL~L~QLD~A~E 415 (872)
T KOG4814|consen 357 LWNT-AKKLFKMEKYVVSIRFYKLSLKDIISDN-YS-------------------DRFAKIQRALQVCYLKLEQLDNAVE 415 (872)
T ss_pred HHHh-hHHHHHHHHHHHHHHHHHHHHHhccchh-hh-------------------hHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3443 3344778899999999999998754221 00 1245678999999999999999999
Q ss_pred HHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 145 VYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 145 ~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
++.+|-+.+|.++- ...+-.+...-|.-++|+.+..+....
T Consensus 416 ~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 416 VYQEAEEVDRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhh
Confidence 99999999999986 555556666778999999998877664
No 300
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=93.36 E-value=1.6 Score=42.72 Aligned_cols=123 Identities=19% Similarity=0.160 Sum_probs=67.2
Q ss_pred cCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHH
Q 024858 6 QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEM 85 (261)
Q Consensus 6 ~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~ 85 (261)
.|+++.|+.+|-++-. ...--.+|-+.|++.+|-.+-+++. .|.. ...++..-+.=+.++|+|.||.++
T Consensus 778 ~~dfe~ae~lf~e~~~--------~~dai~my~k~~kw~da~kla~e~~--~~e~-t~~~yiakaedldehgkf~eaeql 846 (1636)
T KOG3616|consen 778 KGDFEIAEELFTEADL--------FKDAIDMYGKAGKWEDAFKLAEECH--GPEA-TISLYIAKAEDLDEHGKFAEAEQL 846 (1636)
T ss_pred chhHHHHHHHHHhcch--------hHHHHHHHhccccHHHHHHHHHHhc--Cchh-HHHHHHHhHHhHHhhcchhhhhhe
Confidence 4555555555554321 1112244556666666665554443 3442 233444455556778888888776
Q ss_pred HHH------HHHhhcchhhhcCcchHH----HhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 024858 86 LKR------KLRLIYQGEAFNGKPTKT----ARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQM 151 (261)
Q Consensus 86 ~~~------al~l~~~~~~~~~~~~~~----~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~ 151 (261)
|-. ++.+... .+..... .+.|+.. ..+.+..+|.-|...|+..+|+..|.+|-.
T Consensus 847 yiti~~p~~aiqmydk----~~~~ddmirlv~k~h~d~--------l~dt~~~f~~e~e~~g~lkaae~~flea~d 910 (1636)
T KOG3616|consen 847 YITIGEPDKAIQMYDK----HGLDDDMIRLVEKHHGDH--------LHDTHKHFAKELEAEGDLKAAEEHFLEAGD 910 (1636)
T ss_pred eEEccCchHHHHHHHh----hCcchHHHHHHHHhChhh--------hhHHHHHHHHHHHhccChhHHHHHHHhhhh
Confidence 632 2222100 0111111 1223322 246888999999999999999999988743
No 301
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=93.30 E-value=0.1 Score=27.91 Aligned_cols=19 Identities=21% Similarity=0.272 Sum_probs=9.9
Q ss_pred HHHHHHHcCCHHHHHHHHH
Q 024858 69 LIDLYKKCGKVEEQIEMLK 87 (261)
Q Consensus 69 L~~ly~~~g~~~eA~~~~~ 87 (261)
|+.++..+|++++|...++
T Consensus 7 la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 7 LARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHcCCHHHHHHHHh
Confidence 4555555555555555443
No 302
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.19 E-value=0.86 Score=39.62 Aligned_cols=65 Identities=18% Similarity=0.217 Sum_probs=55.5
Q ss_pred hHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 024858 26 VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRL 92 (261)
Q Consensus 26 ~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l 92 (261)
...++..++..+...|+++.++..+++.+..+|- ++..+.-+...|.+.|+...|+..|++.-+.
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~--~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELDPY--DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc--chHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 3556777899999999999999999999999997 3445656778999999999999999997664
No 303
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=93.17 E-value=0.6 Score=36.01 Aligned_cols=77 Identities=18% Similarity=0.261 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHc---CCHHHHHHHHHHHHh-hCCCchh--hhhHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchhhHH
Q 024858 124 RLLGNLAWAYMQK---TNFMAAEVVYQKAQM-IDPDANK--ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRK 197 (261)
Q Consensus 124 ~~~~~Lg~~~~~~---g~~~eA~~~~~~al~-~~P~~~~--~~~L~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~ 197 (261)
...+|++|++... .+..+-+..++..++ -.|+... .+.|+..+.+.++|+.+++++...+.. .+++.+
T Consensus 33 ~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~---e~~n~Q--- 106 (149)
T KOG3364|consen 33 QSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET---EPNNRQ--- 106 (149)
T ss_pred HHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh---CCCcHH---
Confidence 4779999999665 456678999999997 5565553 678999999999999999999999996 444432
Q ss_pred HHHHHHHHHH
Q 024858 198 RAEELLLELE 207 (261)
Q Consensus 198 ~a~~~l~~l~ 207 (261)
|.++-..+.
T Consensus 107 -a~~Lk~~ie 115 (149)
T KOG3364|consen 107 -ALELKETIE 115 (149)
T ss_pred -HHHHHHHHH
Confidence 555554444
No 304
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=93.16 E-value=0.43 Score=43.55 Aligned_cols=103 Identities=18% Similarity=0.143 Sum_probs=75.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 024858 70 IDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKA 149 (261)
Q Consensus 70 ~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~a 149 (261)
+.-+.++|.|.-|+.-|+.+|++...|.+.. ++.+ .+.++.+.+ -..+--.|..||..+++.+-|+..-.+.
T Consensus 183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~-k~~~--~~~~di~~v-----aSfIetklv~CYL~~rkpdlALnh~hrs 254 (569)
T PF15015_consen 183 ASSCYRQKKYAVAAGRFRTALELCSKGAALS-KPFK--ASAEDISSV-----ASFIETKLVTCYLRMRKPDLALNHSHRS 254 (569)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhhhcc-CCCC--CChhhHHHH-----HHHHHHHHHHhhhhcCCCchHHHHHhhh
Confidence 4556788999999999999999876554322 1000 011111111 0123456899999999999999999999
Q ss_pred HhhCCCchh-hhhHHHHHHHcCCHHHHHHHHH
Q 024858 150 QMIDPDANK-ACNLGLCLIKRTRYNEARSVLE 180 (261)
Q Consensus 150 l~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~ 180 (261)
+.++|.... +..-+.|+..+.||.+|.+-+-
T Consensus 255 I~lnP~~frnHLrqAavfR~LeRy~eAarSam 286 (569)
T PF15015_consen 255 INLNPSYFRNHLRQAAVFRRLERYSEAARSAM 286 (569)
T ss_pred hhcCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998 8888999999999999976543
No 305
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.06 E-value=3.7 Score=36.19 Aligned_cols=51 Identities=12% Similarity=0.134 Sum_probs=41.1
Q ss_pred hcCCHHHHHHHHHHHHHcCC----ChHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Q 024858 5 VQKDPEAAIVLFWKAINAGD----RVDSALKDMAVVMKQLDRSEEAIEAIKSFRG 55 (261)
Q Consensus 5 ~~~~~~~A~~~~~~al~~~p----~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~ 55 (261)
..|.++-|...+.++...++ ..+.....-+.++-..|+..+|+..++..+.
T Consensus 158 k~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 158 KAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 46888899999998887542 2456677789999999999999999888776
No 306
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=92.70 E-value=0.37 Score=28.15 Aligned_cols=32 Identities=22% Similarity=0.095 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHcCCcHHHHHH--HHHHHhcCCc
Q 024858 28 SALKDMAVVMKQLDRSEEAIEA--IKSFRGLCSK 59 (261)
Q Consensus 28 ~al~~Lg~~~~~~g~~~eAi~~--~~~~~~~~P~ 59 (261)
+.+..+|..+.++|++++|+.. |+-+..++|.
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 4566778888888888888888 5466656554
No 307
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=92.50 E-value=1.1 Score=36.93 Aligned_cols=58 Identities=28% Similarity=0.385 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHH
Q 024858 63 ESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAA 142 (261)
Q Consensus 63 ~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA 142 (261)
..+...||..|. ..+.++|+.+|-++|++..++.. + +++++..|+.+|.++|+++.|
T Consensus 141 ~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~---------------~-------n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 141 AELQYALATYYT-KRDPEKTIQLLLRALELSNPDDN---------------F-------NPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCC---------------C-------CHHHHHHHHHHHHHhcchhhh
Confidence 346677888776 66999999999999998643211 1 478999999999999999988
Q ss_pred H
Q 024858 143 E 143 (261)
Q Consensus 143 ~ 143 (261)
-
T Consensus 198 Y 198 (203)
T PF11207_consen 198 Y 198 (203)
T ss_pred h
Confidence 4
No 308
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=92.42 E-value=8.6 Score=35.75 Aligned_cols=59 Identities=24% Similarity=0.321 Sum_probs=50.3
Q ss_pred cHHHHHHHHH--HHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHH
Q 024858 122 TSRLLGNLAW--AYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLED 181 (261)
Q Consensus 122 ~~~~~~~Lg~--~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~ 181 (261)
+.++-+.|+. .+..+|+|.++.-+-.-..+++| ++. +.-+|.|+....+|+||..++.+
T Consensus 459 e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 459 EEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 4556666644 46899999999999999999999 666 77889999999999999999887
No 309
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=92.41 E-value=5.5 Score=37.99 Aligned_cols=114 Identities=21% Similarity=0.081 Sum_probs=82.1
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHH
Q 024858 46 AIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRL 125 (261)
Q Consensus 46 Ai~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~ 125 (261)
++..+..-+..+|.+....+.+.+.-.+...++...++...+..+.. +|++..+
T Consensus 50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~--------------------------~~~~~~~ 103 (620)
T COG3914 50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSV--------------------------NPENCPA 103 (620)
T ss_pred HHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhc--------------------------CcccchH
Confidence 55555555666666433223333455556677777777766666654 4567889
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHH-HHhhCCCchh-hhhH------HHHHHHcCCHHHHHHHHHHHHhC
Q 024858 126 LGNLAWAYMQKTNFMAAEVVYQK-AQMIDPDANK-ACNL------GLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 126 ~~~Lg~~~~~~g~~~eA~~~~~~-al~~~P~~~~-~~~L------~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
+.|||.+.+..|....+...+.. +....|++.. ...+ +..+..+|+..++....++++..
T Consensus 104 ~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~ 171 (620)
T COG3914 104 VQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDL 171 (620)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 99999999888888777777766 9999999986 4444 88888889999999998888886
No 310
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=92.11 E-value=8.8 Score=35.79 Aligned_cols=86 Identities=15% Similarity=0.072 Sum_probs=43.7
Q ss_pred hhcCCHHHHHHHHHHHHHcCCChHHH-HHHHHHHHHHcCCcHHHHHH-------HHHHHhcC---------CchhHHHHH
Q 024858 4 LVQKDPEAAIVLFWKAINAGDRVDSA-LKDMAVVMKQLDRSEEAIEA-------IKSFRGLC---------SKQSQESLD 66 (261)
Q Consensus 4 ~~~~~~~~A~~~~~~al~~~p~~~~a-l~~Lg~~~~~~g~~~eAi~~-------~~~~~~~~---------P~~~~~~~~ 66 (261)
+..||++++..+.+ +-++-|..|.. ...++.-+.++|..+.|... ++-+++++ -.-.....+
T Consensus 272 v~~~d~~~v~~~i~-~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~a~~~~~~~~W 350 (443)
T PF04053_consen 272 VLRGDFEEVLRMIA-ASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTDPDHRFELALQLGNLDIALEIAKELDDPEKW 350 (443)
T ss_dssp HHTT-HHH-----H-HHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHHHCCCCSTHHHH
T ss_pred HHcCChhhhhhhhh-hhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHHHHHhcCcHHHH
Confidence 45666776555543 11222332222 33456666677777777643 22222221 110012345
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 024858 67 NVLIDLYKKCGKVEEQIEMLKRKL 90 (261)
Q Consensus 67 ~~L~~ly~~~g~~~eA~~~~~~al 90 (261)
..||++...+|+++-|+++|+++-
T Consensus 351 ~~Lg~~AL~~g~~~lAe~c~~k~~ 374 (443)
T PF04053_consen 351 KQLGDEALRQGNIELAEECYQKAK 374 (443)
T ss_dssp HHHHHHHHHTTBHHHHHHHHHHCT
T ss_pred HHHHHHHHHcCCHHHHHHHHHhhc
Confidence 568999999999999999999853
No 311
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=91.92 E-value=0.7 Score=38.08 Aligned_cols=55 Identities=22% Similarity=0.130 Sum_probs=47.4
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc----hh-hhhHHHHHHHcCCHHHHH
Q 024858 121 ETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDA----NK-ACNLGLCLIKRTRYNEAR 176 (261)
Q Consensus 121 ~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~----~~-~~~L~~~l~~~g~~~eA~ 176 (261)
++++....||..|. ..+.++|+..|-++|++.+.+ ++ ...|+.++.++|++++|-
T Consensus 139 ~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 139 ETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 46888999998887 779999999999999987654 34 568999999999999985
No 312
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=91.88 E-value=7 Score=35.36 Aligned_cols=123 Identities=15% Similarity=0.117 Sum_probs=82.9
Q ss_pred HHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcch--hhh-----cCcchHHHhhchhhhhhhcCCCcH--
Q 024858 53 FRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQG--EAF-----NGKPTKTARSHGKKFQVSVRQETS-- 123 (261)
Q Consensus 53 ~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~--~~~-----~~~~~~~~~~~~~~~~~~l~p~~~-- 123 (261)
.++.+|-+ .....-++.++..+|++..|.+.+++||=..... ..+ +..... ++ +. -..+++-
T Consensus 32 ll~~~PyH--idtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~-~r-----L~-~~~~eNR~f 102 (360)
T PF04910_consen 32 LLQKNPYH--IDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGN-CR-----LD-YRRPENRQF 102 (360)
T ss_pred HHHHCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCc-cc-----cC-CccccchHH
Confidence 35667874 3344458999999999999999999998764311 111 100000 00 00 0011222
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-chh--hhhHHHHHHHcCCHHHHHHHHHHHHh
Q 024858 124 -RLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPD-ANK--ACNLGLCLIKRTRYNEARSVLEDVLY 184 (261)
Q Consensus 124 -~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~--~~~L~~~l~~~g~~~eA~~~~~~~l~ 184 (261)
-+++.....+.+.|-+.-|+++.+-.+.+||+ ++- .+.+-..-++.++++=-+.+++....
T Consensus 103 flal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 103 FLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 25567788889999999999999999999999 764 45566666778888888888877655
No 313
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.65 E-value=6.3 Score=32.00 Aligned_cols=150 Identities=12% Similarity=0.098 Sum_probs=96.6
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchh
Q 024858 33 MAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGK 112 (261)
Q Consensus 33 Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~ 112 (261)
-+.-+.+.|..++|...+..+-+.+-..-.....+-.+.+..+.|+..+|+..|..+-+-.+.... .
T Consensus 64 aAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~--------~----- 130 (221)
T COG4649 64 AALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQI--------G----- 130 (221)
T ss_pred HHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcch--------h-----
Confidence 345567789999999999888776654222233444678889999999999999986553220000 0
Q ss_pred hhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 024858 113 KFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQ-MIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGC 190 (261)
Q Consensus 113 ~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al-~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~~~~~ 190 (261)
-.-+...-++++...|-|+.-..-.+..- .-+|--.. ...||.+-.+.|++..|..+|..+.... ..|
T Consensus 131 ---------rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da-~ap 200 (221)
T COG4649 131 ---------RDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDA-QAP 200 (221)
T ss_pred ---------hHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccc-cCc
Confidence 01134456778889999988766544321 11222233 4579999999999999999999988852 122
Q ss_pred cchhhHHHHHHHHHHHH
Q 024858 191 EDGRTRKRAEELLLELE 207 (261)
Q Consensus 191 ~~~~~~~~a~~~l~~l~ 207 (261)
.+ -.+++.-++.-|.
T Consensus 201 rn--irqRAq~mldlI~ 215 (221)
T COG4649 201 RN--IRQRAQIMLDLID 215 (221)
T ss_pred HH--HHHHHHHHHHHHh
Confidence 22 2345555555443
No 314
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=91.62 E-value=2.2 Score=31.67 Aligned_cols=102 Identities=16% Similarity=0.153 Sum_probs=62.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhh-hhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 024858 71 DLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQ-VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKA 149 (261)
Q Consensus 71 ~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~-~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~a 149 (261)
.-+.+.|++-+|+++.+..+.....+.. ..-.-+.+|..|. +.-+-+++++-.. -.--++.+|.++
T Consensus 4 ~~~~~rGnhiKAL~iied~i~~h~~~~~----~~~lh~~QG~if~~lA~~ten~d~k~~---------yLl~sve~~s~a 70 (111)
T PF04781_consen 4 KDYFARGNHIKALEIIEDLISRHGEDES----SWLLHRLQGTIFYKLAKKTENPDVKFR---------YLLGSVECFSRA 70 (111)
T ss_pred HHHHHccCHHHHHHHHHHHHHHccCCCc----hHHHHHHHhHHHHHHHHhccCchHHHH---------HHHHhHHHHHHH
Confidence 3456789999999999888776432110 0000111222211 1111112221110 123478999999
Q ss_pred HhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 150 QMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 150 l~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
..+.|+.+. .+.||.-+-..--|+++....++.|..
T Consensus 71 ~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 71 VELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred hccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 999999988 888888877777888888888888875
No 315
>PF12854 PPR_1: PPR repeat
Probab=91.43 E-value=0.44 Score=27.26 Aligned_cols=25 Identities=40% Similarity=0.598 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH
Q 024858 64 SLDNVLIDLYKKCGKVEEQIEMLKR 88 (261)
Q Consensus 64 ~~~~~L~~ly~~~g~~~eA~~~~~~ 88 (261)
..++.|.+.|.+.|+.++|.+++++
T Consensus 8 ~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 8 VTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 4577789999999999999999876
No 316
>PF12854 PPR_1: PPR repeat
Probab=91.31 E-value=0.43 Score=27.30 Aligned_cols=29 Identities=24% Similarity=0.248 Sum_probs=19.5
Q ss_pred CCCchhhhhHHHHHHHcCCHHHHHHHHHH
Q 024858 153 DPDANKACNLGLCLIKRTRYNEARSVLED 181 (261)
Q Consensus 153 ~P~~~~~~~L~~~l~~~g~~~eA~~~~~~ 181 (261)
.||...+..|-..|.+.|+.++|.+++++
T Consensus 4 ~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 4 EPDVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CCcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 45555566677777777777777777664
No 317
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=91.30 E-value=0.39 Score=28.44 Aligned_cols=29 Identities=28% Similarity=0.235 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 024858 124 RLLGNLAWAYMQKTNFMAAEVVYQKAQMI 152 (261)
Q Consensus 124 ~~~~~Lg~~~~~~g~~~eA~~~~~~al~~ 152 (261)
+++..||.+-...++|++|+.-|+++|++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 46777888888888888888888888876
No 318
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=91.22 E-value=0.7 Score=32.10 Aligned_cols=55 Identities=13% Similarity=-0.003 Sum_probs=44.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hh---hHHHHHHHcCCHHHHHHHHHH
Q 024858 127 GNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-AC---NLGLCLIKRTRYNEARSVLED 181 (261)
Q Consensus 127 ~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~---~L~~~l~~~g~~~eA~~~~~~ 181 (261)
..-|.=+..+.+..+|+..++++|+..++.+. +. .|..+|...|+|.+.+.+--+
T Consensus 10 ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~ 68 (80)
T PF10579_consen 10 IEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ 68 (80)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455567999999999999999999999886 54 456788999999999887654
No 319
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.16 E-value=7.4 Score=39.75 Aligned_cols=106 Identities=16% Similarity=0.098 Sum_probs=68.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 024858 71 DLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQ 150 (261)
Q Consensus 71 ~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al 150 (261)
.+....+-|+||-.+|++ ..++.+ +.+..... ..+..+.....-+-+.|.+|..||.+..+.|...+|+..|-+|
T Consensus 1056 ~iai~~~LyEEAF~ifkk-f~~n~~--A~~VLie~-i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika- 1130 (1666)
T KOG0985|consen 1056 EIAIENQLYEEAFAIFKK-FDMNVS--AIQVLIEN-IGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA- 1130 (1666)
T ss_pred HHHhhhhHHHHHHHHHHH-hcccHH--HHHHHHHH-hhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc-
Confidence 344567788888888877 232211 11000000 0000111111112256889999999999999999999999876
Q ss_pred hhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 151 MIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 151 ~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
|++. +...-.+-.+.|.|++-++++..+..-
T Consensus 1131 ----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk 1162 (1666)
T KOG0985|consen 1131 ----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK 1162 (1666)
T ss_pred ----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 6666 667777788899999999998877763
No 320
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=91.11 E-value=0.56 Score=40.38 Aligned_cols=57 Identities=18% Similarity=0.223 Sum_probs=34.1
Q ss_pred hhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCch
Q 024858 4 LVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ 60 (261)
Q Consensus 4 ~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~ 60 (261)
+.+++++.|...-.+.+.++|+++.-+..-|.+|.|+|-+.-|+.-+..++...|++
T Consensus 192 ~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~ 248 (269)
T COG2912 192 LRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDD 248 (269)
T ss_pred HHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCc
Confidence 445556666666666666666666555556666666666666666666656666653
No 321
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=90.99 E-value=3 Score=31.01 Aligned_cols=94 Identities=15% Similarity=0.119 Sum_probs=54.1
Q ss_pred HHHHHHcCCcHHHHHHHHHHHhcCCchhHH-HHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHhhcchhhhcC
Q 024858 34 AVVMKQLDRSEEAIEAIKSFRGLCSKQSQE-SLDNVLIDLYKKCGK-----------VEEQIEMLKRKLRLIYQGEAFNG 101 (261)
Q Consensus 34 g~~~~~~g~~~eAi~~~~~~~~~~P~~~~~-~~~~~L~~ly~~~g~-----------~~eA~~~~~~al~l~~~~~~~~~ 101 (261)
+.-+.+.|++-+|.++++.++...+++... .++..-|.++.++.. .-.|+++|.++..+
T Consensus 3 A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~L--------- 73 (111)
T PF04781_consen 3 AKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVEL--------- 73 (111)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhcc---------
Confidence 445566777777777777777766653211 223333333222111 11234444444443
Q ss_pred cchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 024858 102 KPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMID 153 (261)
Q Consensus 102 ~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~ 153 (261)
.|+.+..++.||.=+....-|+++..--+++|.+.
T Consensus 74 -----------------sp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv~ 108 (111)
T PF04781_consen 74 -----------------SPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSVT 108 (111)
T ss_pred -----------------ChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence 34556678888887777778888888888887753
No 322
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=90.92 E-value=5.5 Score=33.74 Aligned_cols=149 Identities=17% Similarity=0.170 Sum_probs=81.0
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc---hhhhcCcc---
Q 024858 30 LKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQ---GEAFNGKP--- 103 (261)
Q Consensus 30 l~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~---~~~~~~~~--- 103 (261)
+..++.+..+.||+++.+.++++++..+|+-..+ =.++|...|. ..+...+.+++.... .....+..
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~e-ERnLlsvayK------n~i~~~R~s~R~l~~~e~~~~~~~~~~~~ 76 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEE-ERNLLSVAYK------NVIGSRRASWRILSSIEQKEENKGNEKQV 76 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HH-HHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHTTTTHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHH-HHHHHHHHHH------hccccchHHHHhhhhHhhhhcccchhHHH
Confidence 5678999999999999999999999998862222 2455665543 334444444443210 00000000
Q ss_pred -------h----HHHhhchhhhh---hhcCCC--cHH--HH--HHHHHHHHH----------cCCHHHHHHHHHHHHh--
Q 024858 104 -------T----KTARSHGKKFQ---VSVRQE--TSR--LL--GNLAWAYMQ----------KTNFMAAEVVYQKAQM-- 151 (261)
Q Consensus 104 -------~----~~~~~~~~~~~---~~l~p~--~~~--~~--~~Lg~~~~~----------~g~~~eA~~~~~~al~-- 151 (261)
. .+...+...+. -.+-|. +++ +. -..|..|.- ..-.+.|..+|++|+.
T Consensus 77 ~~i~~yk~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a 156 (236)
T PF00244_consen 77 KLIKDYKKKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIA 156 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHH
Confidence 0 00000001110 011222 111 11 223444421 1234789999999986
Q ss_pred ---hCCCchh----hhhHHHHHHH-cCCHHHHHHHHHHHHhC
Q 024858 152 ---IDPDANK----ACNLGLCLIK-RTRYNEARSVLEDVLYG 185 (261)
Q Consensus 152 ---~~P~~~~----~~~L~~~l~~-~g~~~eA~~~~~~~l~~ 185 (261)
+.|.+|. ..|.+.+|.+ .|+.++|+.+.++++..
T Consensus 157 ~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~ 198 (236)
T PF00244_consen 157 KKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDE 198 (236)
T ss_dssp HHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred hcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 5688874 3466666644 89999999999988875
No 323
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=90.90 E-value=11 Score=37.60 Aligned_cols=130 Identities=13% Similarity=0.039 Sum_probs=88.0
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHhcCCc-------hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchH
Q 024858 33 MAVVMKQLDRSEEAIEAIKSFRGLCSK-------QSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTK 105 (261)
Q Consensus 33 Lg~~~~~~g~~~eAi~~~~~~~~~~P~-------~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~ 105 (261)
-+-.+..+.|+.||..++.++...-|. +....+..+-+.+....|+.++|++.-+.++..-|.+..+.
T Consensus 421 ~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~----- 495 (894)
T COG2909 421 QAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRS----- 495 (894)
T ss_pred HHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchh-----
Confidence 455667889999999998876553222 11223334455666789999999999999998744221111
Q ss_pred HHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC----Cchh-hh--hHHHHHHHcC--CHHHHH
Q 024858 106 TARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDP----DANK-AC--NLGLCLIKRT--RYNEAR 176 (261)
Q Consensus 106 ~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P----~~~~-~~--~L~~~l~~~g--~~~eA~ 176 (261)
..-++.++|.+.+-+|++++|..+.+++.++.- -... |. .-+.++..+| .+++..
T Consensus 496 ----------------r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~ 559 (894)
T COG2909 496 ----------------RIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQE 559 (894)
T ss_pred ----------------hhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 123678899999999999999999999998833 2223 33 3478889999 444444
Q ss_pred HHHHHHH
Q 024858 177 SVLEDVL 183 (261)
Q Consensus 177 ~~~~~~l 183 (261)
..+..+-
T Consensus 560 ~~~~~~~ 566 (894)
T COG2909 560 KAFNLIR 566 (894)
T ss_pred HHHHHHH
Confidence 4444433
No 324
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=90.86 E-value=10 Score=32.86 Aligned_cols=134 Identities=13% Similarity=0.085 Sum_probs=74.7
Q ss_pred HcCCcHHHHHHHHHHHh----cCCchh--HHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcchhhhcCcchHHHhhch
Q 024858 39 QLDRSEEAIEAIKSFRG----LCSKQS--QESLDNVLIDLYKKCG-KVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHG 111 (261)
Q Consensus 39 ~~g~~~eAi~~~~~~~~----~~P~~~--~~~~~~~L~~ly~~~g-~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~ 111 (261)
.+|+++.|...+.++-. ..|+.. -.......|.-..+.+ ++++|+..++++.++...+.... ..+.
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~-------~~~~ 77 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMD-------KLSP 77 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhcc-------ccCC
Confidence 34555555555555432 233311 0112233555556677 88899888888888743210000 0000
Q ss_pred hhhhhhcCCCcHHHHHHHHHHHHHcCCHHH---HHHHHHHHHhhCCCchh-h-hhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 112 KKFQVSVRQETSRLLGNLAWAYMQKTNFMA---AEVVYQKAQMIDPDANK-A-CNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 112 ~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~e---A~~~~~~al~~~P~~~~-~-~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
....+ ...++..|+.+|.+.+.++- |..+.+.+-.-.|+.+. . ..+- ++.+.++.+++.+.+.+++..
T Consensus 78 ~~~el-----r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~-il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 78 DGSEL-----RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLE-ILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred cHHHH-----HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHH-HHhccCChhHHHHHHHHHHHh
Confidence 00000 12477888999988877653 44455555556677666 3 3333 333378999999999988885
No 325
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=90.70 E-value=2.8 Score=36.20 Aligned_cols=62 Identities=23% Similarity=0.207 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 124 RLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 124 ~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
....|+=.+|.+.++++.|..+-.+.+.++|+++. +..-|.+|..+|.+.-|+.-++..+..
T Consensus 182 rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~ 244 (269)
T COG2912 182 RLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEH 244 (269)
T ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHh
Confidence 45678888999999999999999999999999998 999999999999999999999998775
No 326
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=90.69 E-value=1.1 Score=38.41 Aligned_cols=61 Identities=18% Similarity=0.101 Sum_probs=45.0
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc-CCchhHHHHHHHHHHHHHH
Q 024858 12 AIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGL-CSKQSQESLDNVLIDLYKK 75 (261)
Q Consensus 12 A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~-~P~~~~~~~~~~L~~ly~~ 75 (261)
|+.+|.+|+...|.....++.||++....|+.-+|+=.|-+++.. .|- .....+|..++.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf---~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPF---PSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB-----HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999877776643 343 2233335555555
No 327
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=90.56 E-value=2.1 Score=43.48 Aligned_cols=34 Identities=9% Similarity=-0.118 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh
Q 024858 125 LLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK 158 (261)
Q Consensus 125 ~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~ 158 (261)
-+..-+.+|.++|+++|-+++|.-|++..|+++.
T Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (932)
T PRK13184 554 EYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPE 587 (932)
T ss_pred HHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCc
Confidence 3566778899999999999999999999998874
No 328
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.53 E-value=11 Score=35.29 Aligned_cols=134 Identities=18% Similarity=0.145 Sum_probs=96.1
Q ss_pred hHHHHHHHHHHHHHcC--CcHHHHHHHHHHHhcCCch---hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhc
Q 024858 26 VDSALKDMAVVMKQLD--RSEEAIEAIKSFRGLCSKQ---SQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFN 100 (261)
Q Consensus 26 ~~~al~~Lg~~~~~~g--~~~eAi~~~~~~~~~~P~~---~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~ 100 (261)
...++..||.-+..+| +...+|+.++......|.+ +...+. +..-++.-..+++-|...++++.-+..+-..+
T Consensus 6 va~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~Lq-Lg~lL~~yT~N~elAksHLekA~~i~~~ip~f- 83 (629)
T KOG2300|consen 6 VAEALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQ-LGALLLRYTKNVELAKSHLEKAWLISKSIPSF- 83 (629)
T ss_pred HHHHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHH-HHHHHHHHhccHHHHHHHHHHHHHHHcccccH-
Confidence 3456777888888888 8899999999988887753 333332 12345567889999999999998874210000
Q ss_pred CcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCchhh-----hhHHHHHHHcCCHHH
Q 024858 101 GKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKT-NFMAAEVVYQKAQMIDPDANKA-----CNLGLCLIKRTRYNE 174 (261)
Q Consensus 101 ~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g-~~~eA~~~~~~al~~~P~~~~~-----~~L~~~l~~~g~~~e 174 (261)
...+| ++...|+.+|.+.. .+..|...+++|+++.-..+.| +.|+....-..++.-
T Consensus 84 ---------ydvKf---------~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~s 145 (629)
T KOG2300|consen 84 ---------YDVKF---------QAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPS 145 (629)
T ss_pred ---------Hhhhh---------HHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchh
Confidence 01111 25567888887776 8999999999999998877752 357888888889999
Q ss_pred HHHHH
Q 024858 175 ARSVL 179 (261)
Q Consensus 175 A~~~~ 179 (261)
|++.+
T Consensus 146 A~elL 150 (629)
T KOG2300|consen 146 ALELL 150 (629)
T ss_pred HHHHH
Confidence 98873
No 329
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=90.40 E-value=2.7 Score=39.34 Aligned_cols=84 Identities=14% Similarity=0.035 Sum_probs=59.1
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHH
Q 024858 48 EAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLG 127 (261)
Q Consensus 48 ~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~ 127 (261)
.+|+.+....|.|.. ++...+....+.+-+.+-..+|.+++... |+++++|.
T Consensus 92 ~lyr~at~rf~~D~~--lW~~yi~f~kk~~~~~~v~ki~~~~l~~H--------------------------p~~~dLWI 143 (568)
T KOG2396|consen 92 FLYRRATNRFNGDVK--LWLSYIAFCKKKKTYGEVKKIFAAMLAKH--------------------------PNNPDLWI 143 (568)
T ss_pred HHHHHHHHhcCCCHH--HHHHHHHHHHHhcchhHHHHHHHHHHHhC--------------------------CCCchhHH
Confidence 467788877776432 22223334455555888888888887763 46778888
Q ss_pred HHHHHHHHcCC-HHHHHHHHHHHHhhCCCchh-h
Q 024858 128 NLAWAYMQKTN-FMAAEVVYQKAQMIDPDANK-A 159 (261)
Q Consensus 128 ~Lg~~~~~~g~-~~eA~~~~~~al~~~P~~~~-~ 159 (261)
.-+...+.-+. .+-|.+.+.++|..+|+++. |
T Consensus 144 ~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw 177 (568)
T KOG2396|consen 144 YAAKWEFEINLNIESARALFLRGLRFNPDSPKLW 177 (568)
T ss_pred hhhhhHHhhccchHHHHHHHHHHhhcCCCChHHH
Confidence 77666655555 89999999999999999987 5
No 330
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=90.37 E-value=2.3 Score=36.32 Aligned_cols=44 Identities=20% Similarity=0.058 Sum_probs=36.8
Q ss_pred HHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 142 AEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 142 A~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
|+.+|++|+.+.|++.. ++.||.+....|+.-+|+-+|-+++..
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~ 45 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAV 45 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSS
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhc
Confidence 67889999999999988 888999999999999999888888875
No 331
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=89.20 E-value=1.8 Score=40.85 Aligned_cols=92 Identities=14% Similarity=-0.049 Sum_probs=54.1
Q ss_pred CcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCC
Q 024858 42 RSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQE 121 (261)
Q Consensus 42 ~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~ 121 (261)
....||..|.+++...|.. ..+..+-+.++.+.+=..++..+++....- +.++|.
T Consensus 389 ~~~~~i~~~s~a~q~~~~~--~~~l~nraa~lmkRkW~~d~~~AlrDch~A-----------------------lrln~s 443 (758)
T KOG1310|consen 389 IVSGAISHYSRAIQYVPDA--IYLLENRAAALMKRKWRGDSYLALRDCHVA-----------------------LRLNPS 443 (758)
T ss_pred HHHHHHHHHHHHhhhccch--hHHHHhHHHHHHhhhccccHHHHHHhHHhh-----------------------ccCChH
Confidence 4455666677777766662 122222344444443333333333322221 233344
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh
Q 024858 122 TSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK 158 (261)
Q Consensus 122 ~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~ 158 (261)
.-.+|+.|+.++.+.+++.||+.+...+....|.+..
T Consensus 444 ~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd~a 480 (758)
T KOG1310|consen 444 IQKAHFRLARALNELTRYLEALSCHWALQMSFPTDVA 480 (758)
T ss_pred HHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchhhh
Confidence 5568888888888999999998888888888886654
No 332
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=89.07 E-value=7.7 Score=37.99 Aligned_cols=109 Identities=17% Similarity=0.016 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhh-----hhcCCCcHHHHHHHHHHHHHcC
Q 024858 63 ESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQ-----VSVRQETSRLLGNLAWAYMQKT 137 (261)
Q Consensus 63 ~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~-----~~l~p~~~~~~~~Lg~~~~~~g 137 (261)
+.+++..|+-....-.+++|.++|.+.-.....-+.+ .+...|. ..--|++...+--+|..+...|
T Consensus 796 e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecl---------y~le~f~~LE~la~~Lpe~s~llp~~a~mf~svG 866 (1189)
T KOG2041|consen 796 EDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECL---------YRLELFGELEVLARTLPEDSELLPVMADMFTSVG 866 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHH---------HHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhc
Confidence 3455667777778888999998888754331111111 1111111 2334788888888999999999
Q ss_pred CHHHHHHHHHHHHhhCCCch--------------------------h-hhhHHHHHHHcCCHHHHHHHHHHH
Q 024858 138 NFMAAEVVYQKAQMIDPDAN--------------------------K-ACNLGLCLIKRTRYNEARSVLEDV 182 (261)
Q Consensus 138 ~~~eA~~~~~~al~~~P~~~--------------------------~-~~~L~~~l~~~g~~~eA~~~~~~~ 182 (261)
.-++|...|.+- -.|.-+ . ...-+.-++..++.-||++.++++
T Consensus 867 MC~qAV~a~Lr~--s~pkaAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka 936 (1189)
T KOG2041|consen 867 MCDQAVEAYLRR--SLPKAAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKA 936 (1189)
T ss_pred hHHHHHHHHHhc--cCcHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcchHHHHHHhhhc
Confidence 999998888652 122111 1 112344456668888888888876
No 333
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=88.74 E-value=2.7 Score=29.21 Aligned_cols=61 Identities=13% Similarity=0.199 Sum_probs=46.4
Q ss_pred HHHHHHHHHcCCcHHHHHHHHHHHhcCCc--hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 024858 31 KDMAVVMKQLDRSEEAIEAIKSFRGLCSK--QSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRL 92 (261)
Q Consensus 31 ~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~--~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l 92 (261)
..-|.-+.++++.++|+...++++...++ +-...++. |..+|...|+|.+.++.--+=+.+
T Consensus 10 ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~-l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 10 IEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGY-LIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33466677999999999999999987665 22233343 778899999999999887766665
No 334
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=88.69 E-value=1.6 Score=38.05 Aligned_cols=58 Identities=26% Similarity=0.205 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHH
Q 024858 125 LLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDV 182 (261)
Q Consensus 125 ~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~ 182 (261)
.++-.+..|...|.+.+|+.+.++++.++|=+.. +.-|-.+|...|+--+|+..|++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 4455678899999999999999999999999988 888899999999988888877653
No 335
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=88.29 E-value=8.1 Score=39.81 Aligned_cols=124 Identities=19% Similarity=0.211 Sum_probs=71.6
Q ss_pred HHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhh
Q 024858 38 KQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVS 117 (261)
Q Consensus 38 ~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (261)
.-+|+|+.|+..+.+ .++...+. .-+ ++ .+.|.|.+|..+|+--.+... ..+. .. .+.+.
T Consensus 891 ~~L~ry~~AL~hLs~---~~~~~~~e-~~n-~I---~kh~Ly~~aL~ly~~~~e~~k--~i~~-----~y---a~hL~-- 950 (1265)
T KOG1920|consen 891 DYLKRYEDALSHLSE---CGETYFPE-CKN-YI---KKHGLYDEALALYKPDSEKQK--VIYE-----AY---ADHLR-- 950 (1265)
T ss_pred HHHHHHHHHHHHHHH---cCccccHH-HHH-HH---HhcccchhhhheeccCHHHHH--HHHH-----HH---HHHHH--
Confidence 345677777776544 33432122 222 22 678888888877765444311 0000 00 00000
Q ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----------hCCCchh----hhhHHHHHHHcCCHHHHHHHHHHHH
Q 024858 118 VRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQM----------IDPDANK----ACNLGLCLIKRTRYNEARSVLEDVL 183 (261)
Q Consensus 118 l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~----------~~P~~~~----~~~L~~~l~~~g~~~eA~~~~~~~l 183 (261)
..--+..-|..|...|+.++|+.+|+.+.. +.++-.. ...|..-+.+++++-||..+....+
T Consensus 951 ----~~~~~~~Aal~Ye~~GklekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 951 ----EELMSDEAALMYERCGKLEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred ----HhccccHHHHHHHHhccHHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHh
Confidence 001234567788888888888888876543 2232222 2578888999999999999998877
Q ss_pred hC
Q 024858 184 YG 185 (261)
Q Consensus 184 ~~ 185 (261)
..
T Consensus 1027 sd 1028 (1265)
T KOG1920|consen 1027 SD 1028 (1265)
T ss_pred cC
Confidence 74
No 336
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=88.06 E-value=1.7 Score=26.56 Aligned_cols=27 Identities=19% Similarity=0.092 Sum_probs=21.5
Q ss_pred HHHHHHHHHcCCcHHHHHHHHHHHhcC
Q 024858 31 KDMAVVMKQLDRSEEAIEAIKSFRGLC 57 (261)
Q Consensus 31 ~~Lg~~~~~~g~~~eAi~~~~~~~~~~ 57 (261)
..|+..|..+|+.+.|.+.++.++.-.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 467888888888888888888888543
No 337
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=87.77 E-value=13 Score=33.25 Aligned_cols=129 Identities=12% Similarity=0.136 Sum_probs=73.0
Q ss_pred cHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCC-
Q 024858 43 SEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQE- 121 (261)
Q Consensus 43 ~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~- 121 (261)
..+-|+....++.++|. -.....+|+. .+.--..+|+.+++++|+..+.. ++ .......++....-..+.+
T Consensus 200 p~~RI~~A~~ALeIN~e--CA~AyvLLAE--EEa~Ti~~AE~l~k~ALka~e~~--yr--~sqq~qh~~~~~da~~rRDt 271 (556)
T KOG3807|consen 200 PPARIKAAYQALEINNE--CATAYVLLAE--EEATTIVDAERLFKQALKAGETI--YR--QSQQCQHQSPQHEAQLRRDT 271 (556)
T ss_pred cHHHHHHHHHHHhcCch--hhhHHHhhhh--hhhhhHHHHHHHHHHHHHHHHHH--Hh--hHHHHhhhccchhhhhhccc
Confidence 34556666777888887 3334444543 34455678888888888763210 00 0000111111000000000
Q ss_pred c--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch--h-hhhHHHHHHHcCCHHHHHHHH
Q 024858 122 T--SRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN--K-ACNLGLCLIKRTRYNEARSVL 179 (261)
Q Consensus 122 ~--~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~--~-~~~L~~~l~~~g~~~eA~~~~ 179 (261)
+ .-+-..|+.|-.++|+..||++.++...+-.|=.. . +-||-.++.+..-|.+...++
T Consensus 272 nvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavL 334 (556)
T KOG3807|consen 272 NVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVL 334 (556)
T ss_pred chhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 12346799999999999999999999988877433 2 457777777665555544443
No 338
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=87.72 E-value=27 Score=33.49 Aligned_cols=164 Identities=14% Similarity=0.100 Sum_probs=105.2
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHHcCCHHH
Q 024858 3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLC-SKQSQESLDNVLIDLYKKCGKVEE 81 (261)
Q Consensus 3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~-P~~~~~~~~~~L~~ly~~~g~~~e 81 (261)
.+..|+++....+|++.+-.=-...+.|...+.-+...|+..-|-..+..+.+.. |..+ .+...-+.+-...|+++.
T Consensus 307 ~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~--~i~L~~a~f~e~~~n~~~ 384 (577)
T KOG1258|consen 307 EITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTP--IIHLLEARFEESNGNFDD 384 (577)
T ss_pred hhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCc--HHHHHHHHHHHhhccHHH
Confidence 4577889999999998887556778888888888888899888888777766643 4422 233334555567789999
Q ss_pred HHHHHHHHHHhhcchhhhc-----------CcchHHHhhchhhhhh----hcCCC-cHHHHHHHHHH-HHHcCCHHHHHH
Q 024858 82 QIEMLKRKLRLIYQGEAFN-----------GKPTKTARSHGKKFQV----SVRQE-TSRLLGNLAWA-YMQKTNFMAAEV 144 (261)
Q Consensus 82 A~~~~~~al~l~~~~~~~~-----------~~~~~~~~~~~~~~~~----~l~p~-~~~~~~~Lg~~-~~~~g~~~eA~~ 144 (261)
|..+|++...-. ||..-+ |.. .....+...... ...++ .+..+.+.++. +.-.++.++|..
T Consensus 385 A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~-~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~ 462 (577)
T KOG1258|consen 385 AKVILQRIESEY-PGLVEVVLRKINWERRKGNL-EDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARI 462 (577)
T ss_pred HHHHHHHHHhhC-CchhhhHHHHHhHHHHhcch-hhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHH
Confidence 999999987764 442211 100 000000000000 01111 12233444444 356799999999
Q ss_pred HHHHHHhhCCCchh-hhhHHHHHHHcC
Q 024858 145 VYQKAQMIDPDANK-ACNLGLCLIKRT 170 (261)
Q Consensus 145 ~~~~al~~~P~~~~-~~~L~~~l~~~g 170 (261)
.+.+++.+.|++.. +..+-.....++
T Consensus 463 ~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 463 ILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 99999999999998 766666555444
No 339
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=87.33 E-value=9.4 Score=34.95 Aligned_cols=130 Identities=15% Similarity=0.100 Sum_probs=88.4
Q ss_pred cCCHHHHHHHHHHHHH---c------CCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHh---cCCc-hhHHHHHHHHHHH
Q 024858 6 QKDPEAAIVLFWKAIN---A------GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRG---LCSK-QSQESLDNVLIDL 72 (261)
Q Consensus 6 ~~~~~~A~~~~~~al~---~------~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~---~~P~-~~~~~~~~~L~~l 72 (261)
.+++.+|...-...+. . |--.+..|+.+..++-..|+...-...+...++ +..+ .....+.|.|-..
T Consensus 139 ~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~ 218 (493)
T KOG2581|consen 139 QKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRN 218 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHH
Confidence 4556666655554442 1 111355677888999999997777666655443 2222 3355677888888
Q ss_pred HHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 024858 73 YKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMI 152 (261)
Q Consensus 73 y~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~ 152 (261)
|...+.|+.|...-.++. .|..+.| .+.++.++.+|.+-.-+++|..|.+++-.|+..
T Consensus 219 yL~n~lydqa~~lvsK~~---~pe~~sn-------------------ne~ARY~yY~GrIkaiqldYssA~~~~~qa~rk 276 (493)
T KOG2581|consen 219 YLHNKLYDQADKLVSKSV---YPEAASN-------------------NEWARYLYYLGRIKAIQLDYSSALEYFLQALRK 276 (493)
T ss_pred HhhhHHHHHHHHHhhccc---Ccccccc-------------------HHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHh
Confidence 899999999987766632 1111111 123567788999999999999999999999999
Q ss_pred CCCch
Q 024858 153 DPDAN 157 (261)
Q Consensus 153 ~P~~~ 157 (261)
.|.+.
T Consensus 277 apq~~ 281 (493)
T KOG2581|consen 277 APQHA 281 (493)
T ss_pred Ccchh
Confidence 99764
No 340
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=87.20 E-value=3.1 Score=38.11 Aligned_cols=108 Identities=16% Similarity=0.164 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH-------HhhCCCc-hh-hhhHHHHHHHcCCHHHHHHHHHHHHhCC--CC-----
Q 024858 125 LLGNLAWAYMQKTNFMAAEVVYQKA-------QMIDPDA-NK-ACNLGLCLIKRTRYNEARSVLEDVLYGR--IP----- 188 (261)
Q Consensus 125 ~~~~Lg~~~~~~g~~~eA~~~~~~a-------l~~~P~~-~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~--~~----- 188 (261)
....|..++.-.|+|..|++...-. ...-|.. .. .+.+|-+|+.++||.+|++.+..++.-- ..
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k~~~~~ 203 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTKNQYHQ 203 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 3466788899999999999987653 1112322 24 6789999999999999999999988730 11
Q ss_pred -CCc---chhhHHHHHHHHHHHHhcCCCCchhhhcccchhHHHHHHHHH
Q 024858 189 -GCE---DGRTRKRAEELLLELESKQPPPDLSDLLGLNLEDEFVNGLEE 233 (261)
Q Consensus 189 -~~~---~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~ 233 (261)
.+. -.+..++...+++-|.... |.+..++....+.+.+.+.+..
T Consensus 204 ~~~q~d~i~K~~eqMyaLlAic~~l~-p~~lde~i~~~lkeky~ek~~k 251 (404)
T PF10255_consen 204 RSYQYDQINKKNEQMYALLAICLSLC-PQRLDESISSQLKEKYGEKMEK 251 (404)
T ss_pred ccchhhHHHhHHHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHHHHH
Confidence 111 1354555555555555433 3234444444554555544443
No 341
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=87.15 E-value=27 Score=38.78 Aligned_cols=160 Identities=15% Similarity=0.123 Sum_probs=108.3
Q ss_pred HHHHHHHHHHH-------cCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHH
Q 024858 11 AAIVLFWKAIN-------AGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQI 83 (261)
Q Consensus 11 ~A~~~~~~al~-------~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~ 83 (261)
+-+-.+++++- .+....+.|...|.+-+..|+++-|-.++-.+.+..+.. +....|.++-..|+...|+
T Consensus 1647 epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~~~----i~~E~AK~lW~~gd~~~Al 1722 (2382)
T KOG0890|consen 1647 EPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESRLPE----IVLERAKLLWQTGDELNAL 1722 (2382)
T ss_pred hHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcccch----HHHHHHHHHHhhccHHHHH
Confidence 33445555552 234578899999999999999999999888887776552 4555788889999999999
Q ss_pred HHHHHHHHhhcchh--hhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCH--HHHHHHHHHHHhhCCCchh-
Q 024858 84 EMLKRKLRLIYQGE--AFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNF--MAAEVVYQKAQMIDPDANK- 158 (261)
Q Consensus 84 ~~~~~al~l~~~~~--~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~--~eA~~~~~~al~~~P~~~~- 158 (261)
..+++.+..+-++. .++..+.. .+.. -+..+..-++......|++ +.-++.|+.|.++.|....
T Consensus 1723 ~~Lq~~l~~~~~~~~~~~~~~p~~----~n~~-------i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~ 1791 (2382)
T KOG0890|consen 1723 SVLQEILSKNFPDLHTPYTDTPQS----VNLL-------IFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDK 1791 (2382)
T ss_pred HHHHHHHHhhcccccCCccccchh----hhhh-------hhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCc
Confidence 99999998753321 11100000 0000 0123455566666666664 4567899999999998887
Q ss_pred hhhHHHHHHH------------cCCHHH---HHHHHHHHHhC
Q 024858 159 ACNLGLCLIK------------RTRYNE---ARSVLEDVLYG 185 (261)
Q Consensus 159 ~~~L~~~l~~------------~g~~~e---A~~~~~~~l~~ 185 (261)
++.||..|.+ +|++.. ++..|.+++..
T Consensus 1792 hy~l~~yy~kll~~~~~~~~E~~g~~~~~l~~~~~~~~sl~y 1833 (2382)
T KOG0890|consen 1792 HYHLGKYYDKLLEDYKSNKMEKSGRVLSLLKAIYFFGRALYY 1833 (2382)
T ss_pred eeeHHHHHHHHhhhhhcccccccccHHHHHHHHHHHHHHHHh
Confidence 8888865543 367766 66666677774
No 342
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=86.72 E-value=20 Score=35.61 Aligned_cols=166 Identities=16% Similarity=0.173 Sum_probs=90.5
Q ss_pred hhcCCHHHHHHHHHHHHHcC----------C-ChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Q 024858 4 LVQKDPEAAIVLFWKAINAG----------D-RVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDL 72 (261)
Q Consensus 4 ~~~~~~~~A~~~~~~al~~~----------p-~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~l 72 (261)
+.-|.++.|+.+|.+.-..+ | ...+++..+|.-+-..|+..+|...|-++- ++ . .-.++
T Consensus 848 iti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~-----d~-k----aavnm 917 (1636)
T KOG3616|consen 848 ITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG-----DF-K----AAVNM 917 (1636)
T ss_pred EEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhh-----hH-H----HHHHH
Confidence 34567778888887642211 1 234566678888999999999988764431 10 1 12234
Q ss_pred HHHcCCHHHHHHHHHHHHHhh------------cchhhhc---Ccc--hHHHhhc-------hhhhh---hhcCCCcHHH
Q 024858 73 YKKCGKVEEQIEMLKRKLRLI------------YQGEAFN---GKP--TKTARSH-------GKKFQ---VSVRQETSRL 125 (261)
Q Consensus 73 y~~~g~~~eA~~~~~~al~l~------------~~~~~~~---~~~--~~~~~~~-------~~~~~---~~l~p~~~~~ 125 (261)
|...+-|++|..+-+.----+ --|.+-. ++. ...+-.+ .-.|. +..+-..+.+
T Consensus 918 yk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k~~~v 997 (1636)
T KOG3616|consen 918 YKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDKMGEV 997 (1636)
T ss_pred hhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhccCccc
Confidence 555556655543322100000 0000000 000 0000000 00011 3445556789
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchhhhh-----HHHHHHHcC-CHHHHHHHH
Q 024858 126 LGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKACN-----LGLCLIKRT-RYNEARSVL 179 (261)
Q Consensus 126 ~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~-----L~~~l~~~g-~~~eA~~~~ 179 (261)
+..++..+...|++++|-+.|-++++++.-|..|+. .-.-.++.| +.++|...|
T Consensus 998 hlk~a~~ledegk~edaskhyveaiklntynitwcqavpsrfd~e~ir~gnkpe~av~mf 1057 (1636)
T KOG3616|consen 998 HLKLAMFLEDEGKFEDASKHYVEAIKLNTYNITWCQAVPSRFDAEFIRAGNKPEEAVEMF 1057 (1636)
T ss_pred hhHHhhhhhhccchhhhhHhhHHHhhcccccchhhhcccchhhHHHHHcCCChHHHHHHh
Confidence 999999999999999999999999999877765542 122233444 556655554
No 343
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.16 E-value=15 Score=37.77 Aligned_cols=156 Identities=14% Similarity=0.085 Sum_probs=98.6
Q ss_pred CCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024858 7 KDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEML 86 (261)
Q Consensus 7 ~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~ 86 (261)
+.++.|..+-.+. +.+..|..+|..-.+.|+..+||+-|-+ .-+|.+ .. .-.++-.+.|.|++-+.++
T Consensus 1089 ~~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~dAieSyik--adDps~-y~----eVi~~a~~~~~~edLv~yL 1156 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVKDAIESYIK--ADDPSN-YL----EVIDVASRTGKYEDLVKYL 1156 (1666)
T ss_pred hhHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchHHHHHHHHh--cCCcHH-HH----HHHHHHHhcCcHHHHHHHH
Confidence 3455555544433 4577899999999999999999998733 345552 12 2345557899999999887
Q ss_pred HHHHHhh-cch--hhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhH
Q 024858 87 KRKLRLI-YQG--EAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNL 162 (261)
Q Consensus 87 ~~al~l~-~~~--~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L 162 (261)
.-+-+.. ++. ........+..+- ...-....-|+.+. ....|.-+...|.|+.|.-.|.- .+ |..|
T Consensus 1157 ~MaRkk~~E~~id~eLi~AyAkt~rl-~elE~fi~gpN~A~-i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~L 1226 (1666)
T KOG0985|consen 1157 LMARKKVREPYIDSELIFAYAKTNRL-TELEEFIAGPNVAN-IQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKL 1226 (1666)
T ss_pred HHHHHhhcCccchHHHHHHHHHhchH-HHHHHHhcCCCchh-HHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHH
Confidence 6654431 110 0000000000000 00001234455544 35678888899999999888754 45 7889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHh
Q 024858 163 GLCLIKRTRYNEARSVLEDVLY 184 (261)
Q Consensus 163 ~~~l~~~g~~~eA~~~~~~~l~ 184 (261)
+..+...|.|..|...-+++-.
T Consensus 1227 a~TLV~LgeyQ~AVD~aRKAns 1248 (1666)
T KOG0985|consen 1227 ASTLVYLGEYQGAVDAARKANS 1248 (1666)
T ss_pred HHHHHHHHHHHHHHHHhhhccc
Confidence 9999999999999888887654
No 344
>PF13041 PPR_2: PPR repeat family
Probab=85.91 E-value=1.8 Score=26.68 Aligned_cols=29 Identities=34% Similarity=0.436 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 024858 64 SLDNVLIDLYKKCGKVEEQIEMLKRKLRL 92 (261)
Q Consensus 64 ~~~~~L~~ly~~~g~~~eA~~~~~~al~l 92 (261)
..++.+...|.+.|++++|.++|++..+.
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 35677889999999999999999998875
No 345
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=85.70 E-value=25 Score=31.59 Aligned_cols=25 Identities=28% Similarity=0.497 Sum_probs=23.2
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 161 NLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 161 ~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
.|++|-.++||..||++.++.....
T Consensus 280 RLAMCARklGrlrEA~K~~RDL~ke 304 (556)
T KOG3807|consen 280 RLAMCARKLGRLREAVKIMRDLMKE 304 (556)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhh
Confidence 6899999999999999999998875
No 346
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=85.53 E-value=9.1 Score=35.60 Aligned_cols=65 Identities=14% Similarity=0.080 Sum_probs=47.7
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch-------------h-h--hhHHHHHHHcCCHHHHHHHHHHHHh
Q 024858 121 ETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN-------------K-A--CNLGLCLIKRTRYNEARSVLEDVLY 184 (261)
Q Consensus 121 ~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~-------------~-~--~~L~~~l~~~g~~~eA~~~~~~~l~ 184 (261)
..+.+..-.|.+..+++.+.+|+..+-.--..-.+.. + + .-.+.+++++|++.|+..+..+++.
T Consensus 77 ~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~ 156 (549)
T PF07079_consen 77 KSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIE 156 (549)
T ss_pred CchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 3445566678888999999999998876555421111 1 1 2358899999999999999998877
Q ss_pred C
Q 024858 185 G 185 (261)
Q Consensus 185 ~ 185 (261)
.
T Consensus 157 ~ 157 (549)
T PF07079_consen 157 R 157 (549)
T ss_pred H
Confidence 4
No 347
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=85.41 E-value=1.6 Score=23.46 Aligned_cols=26 Identities=35% Similarity=0.441 Sum_probs=21.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 024858 66 DNVLIDLYKKCGKVEEQIEMLKRKLR 91 (261)
Q Consensus 66 ~~~L~~ly~~~g~~~eA~~~~~~al~ 91 (261)
++.+.+.|.+.|++++|.+.+++..+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 45677888999999999999998655
No 348
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=85.33 E-value=22 Score=33.17 Aligned_cols=126 Identities=15% Similarity=0.101 Sum_probs=70.2
Q ss_pred HHcCCcHHHHHHHH--HHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchh---
Q 024858 38 KQLDRSEEAIEAIK--SFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGK--- 112 (261)
Q Consensus 38 ~~~g~~~eAi~~~~--~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~--- 112 (261)
...|+++++...++ +.+..-|. ..++.++..+.++|-.+.|...-+.--... .++-..+.
T Consensus 272 v~~~d~~~v~~~i~~~~ll~~i~~----~~~~~i~~fL~~~G~~e~AL~~~~D~~~rF-----------eLAl~lg~L~~ 336 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLLPNIPK----DQGQSIARFLEKKGYPELALQFVTDPDHRF-----------ELALQLGNLDI 336 (443)
T ss_dssp HHTT-HHH-----HHHHTGGG--H----HHHHHHHHHHHHTT-HHHHHHHSS-HHHHH-----------HHHHHCT-HHH
T ss_pred HHcCChhhhhhhhhhhhhcccCCh----hHHHHHHHHHHHCCCHHHHHhhcCChHHHh-----------HHHHhcCCHHH
Confidence 34678888777664 22322232 245556777789999999876533311110 00111111
Q ss_pred hhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 113 KFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 113 ~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
.+.+.-+.+++..|..||...+.+|+++-|+.+|+++= ++..|...|.-.|+.+.=..+.+.+...
T Consensus 337 A~~~a~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~-------d~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 337 ALEIAKELDDPEKWKQLGDEALRQGNIELAEECYQKAK-------DFSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHHHCCCCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT--------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc-------CccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 11233334567899999999999999999999999852 2466777777888876666666555553
No 349
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=85.01 E-value=37 Score=32.46 Aligned_cols=73 Identities=8% Similarity=0.024 Sum_probs=57.9
Q ss_pred HHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 024858 17 WKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRL 92 (261)
Q Consensus 17 ~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l 92 (261)
++-|+.+|.+.++|..|-.=+..+ .+++..+.|++.+...|..+. .+..-+.--...++|+.-+.+|.+.|..
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r--~W~~yi~~El~skdfe~VEkLF~RCLvk 82 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPR--AWKLYIERELASKDFESVEKLFSRCLVK 82 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcH--HHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 678899999999999887665554 999999999999999998432 3333344446788999999999888775
No 350
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=85.00 E-value=2.3 Score=25.11 Aligned_cols=28 Identities=18% Similarity=0.242 Sum_probs=24.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 024858 66 DNVLIDLYKKCGKVEEQIEMLKRKLRLI 93 (261)
Q Consensus 66 ~~~L~~ly~~~g~~~eA~~~~~~al~l~ 93 (261)
+..||++-...++|+.|++-|+++|++.
T Consensus 4 ~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 4 YDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 4568899999999999999999999984
No 351
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=84.92 E-value=5.4 Score=36.59 Aligned_cols=66 Identities=14% Similarity=0.212 Sum_probs=47.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 024858 68 VLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQ 147 (261)
Q Consensus 68 ~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~ 147 (261)
.|..++.-.|+|..|++.++. +++...+ .+. .+-+-+-.+++.+|.+|+.+++|.+|++.|.
T Consensus 127 gLlRvh~LLGDY~~Alk~l~~-idl~~~~-l~~----------------~V~~~~is~~YyvGFaylMlrRY~DAir~f~ 188 (404)
T PF10255_consen 127 GLLRVHCLLGDYYQALKVLEN-IDLNKKG-LYT----------------KVPACHISTYYYVGFAYLMLRRYADAIRTFS 188 (404)
T ss_pred HHHHHHHhccCHHHHHHHhhc-cCcccch-hhc----------------cCcchheehHHHHHHHHHHHHHHHHHHHHHH
Confidence 355778889999999988776 4442211 111 0111123478999999999999999999999
Q ss_pred HHHh
Q 024858 148 KAQM 151 (261)
Q Consensus 148 ~al~ 151 (261)
..|.
T Consensus 189 ~iL~ 192 (404)
T PF10255_consen 189 QILL 192 (404)
T ss_pred HHHH
Confidence 9885
No 352
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=84.67 E-value=24 Score=30.10 Aligned_cols=155 Identities=14% Similarity=0.100 Sum_probs=79.0
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHhc-CCchhHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhhc--chhh-h---c-
Q 024858 30 LKDMAVVMKQLDRSEEAIEAIKSFRGL-CSKQSQESLDNVLIDLYKK-CGKVEEQIEMLKRKLRLIY--QGEA-F---N- 100 (261)
Q Consensus 30 l~~Lg~~~~~~g~~~eAi~~~~~~~~~-~P~~~~~~~~~~L~~ly~~-~g~~~eA~~~~~~al~l~~--~~~~-~---~- 100 (261)
+..++.+.-+.+||++.+.+.++++.. +|..-...-.++|...|.. .|....+...+.. ++... .+.. . .
T Consensus 4 ~v~~Aklaeq~eRyddm~~~mk~~~~~~~~~eLt~EERnLLSvayKn~i~~~R~s~R~i~s-ie~ke~~~~~~~~~~~~~ 82 (244)
T smart00101 4 NVYMAKLAEQAERYEEMVEFMEKVAKTVDSEELTVEERNLLSVAYKNVIGARRASWRIISS-IEQKEESRGNEDHVASIK 82 (244)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHhhhhcccHHHHHHHhH-HHHhhhccCchHHHHHHH
Confidence 455788888899999999999988876 5521112234555555532 3444444444333 11110 0000 0 0
Q ss_pred Ccch----HHHhhchhhhh---hhcCCCc--H--HHH--HHHHHHHHH-----cC-----CHHHHHHHHHHHHh-----h
Q 024858 101 GKPT----KTARSHGKKFQ---VSVRQET--S--RLL--GNLAWAYMQ-----KT-----NFMAAEVVYQKAQM-----I 152 (261)
Q Consensus 101 ~~~~----~~~~~~~~~~~---~~l~p~~--~--~~~--~~Lg~~~~~-----~g-----~~~eA~~~~~~al~-----~ 152 (261)
.... .+...+...+. -.+-|+. + .+. -..|..|.- .| -.+.|...|++|++ +
T Consensus 83 ~yr~kie~EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~aY~~A~e~a~~~L 162 (244)
T smart00101 83 EYRGKIETELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLVAYKSAQDIALAEL 162 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 0000 00000111111 1222321 1 111 223444422 22 25689999999986 4
Q ss_pred CCCchh----hhhHHHHHHH-cCCHHHHHHHHHHHHhC
Q 024858 153 DPDANK----ACNLGLCLIK-RTRYNEARSVLEDVLYG 185 (261)
Q Consensus 153 ~P~~~~----~~~L~~~l~~-~g~~~eA~~~~~~~l~~ 185 (261)
.|.+|- ..|.+.+|.+ +++.++|..+.++++..
T Consensus 163 ~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~ 200 (244)
T smart00101 163 PPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDE 200 (244)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 577774 2455555554 59999999888887775
No 353
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=84.56 E-value=13 Score=31.61 Aligned_cols=90 Identities=14% Similarity=0.075 Sum_probs=58.9
Q ss_pred CCcHHHHHHHHHHHhcCCc----hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhh
Q 024858 41 DRSEEAIEAIKSFRGLCSK----QSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQV 116 (261)
Q Consensus 41 g~~~eAi~~~~~~~~~~P~----~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~ 116 (261)
+.....|++++++...... -....+...+|..|...|++++|+..|+.+.... +..+-...
T Consensus 152 ~hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~y--------------r~egW~~l- 216 (247)
T PF11817_consen 152 DHSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSY--------------RREGWWSL- 216 (247)
T ss_pred chHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--------------HhCCcHHH-
Confidence 3444556667666554432 1123345668999999999999999999986542 11111100
Q ss_pred hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 024858 117 SVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQ 150 (261)
Q Consensus 117 ~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al 150 (261)
...++..|-.|+...|+.++.+.+--+.+
T Consensus 217 -----~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 217 -----LTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred -----HHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 23577888999999999988887765544
No 354
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=84.53 E-value=6.2 Score=40.92 Aligned_cols=137 Identities=20% Similarity=0.133 Sum_probs=99.7
Q ss_pred HHHHHHHHHHcCCcHHHHH------HHHH-HHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCc
Q 024858 30 LKDMAVVMKQLDRSEEAIE------AIKS-FRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGK 102 (261)
Q Consensus 30 l~~Lg~~~~~~g~~~eAi~------~~~~-~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~ 102 (261)
....|......|.+.+|.+ .+.. .-.+.|+ ....+..|+.++.+.|++++|+..-+++.-+...-.
T Consensus 935 ~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~--~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~----- 1007 (1236)
T KOG1839|consen 935 SPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPE--VASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVL----- 1007 (1236)
T ss_pred hhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchh--HHHHHHHHHHHHhhhcchHHHHHhcccceeeechhc-----
Confidence 3346777777888888877 4442 2334555 334566799999999999999999888877642100
Q ss_pred chHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CCch---h-hhhHHHHHHHcCCHH
Q 024858 103 PTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMID-----PDAN---K-ACNLGLCLIKRTRYN 173 (261)
Q Consensus 103 ~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~-----P~~~---~-~~~L~~~l~~~g~~~ 173 (261)
..++ |+....+.|++......++...|...+.+++.+. |+.+ . ..|++.++...++++
T Consensus 1008 ----g~ds---------~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d 1074 (1236)
T KOG1839|consen 1008 ----GKDS---------PNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEAD 1074 (1236)
T ss_pred ----cCCC---------HHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHH
Confidence 0011 2334577889999999999999999999998753 4444 3 468999999999999
Q ss_pred HHHHHHHHHHhCC
Q 024858 174 EARSVLEDVLYGR 186 (261)
Q Consensus 174 eA~~~~~~~l~~~ 186 (261)
-|+++.+.++..+
T Consensus 1075 ~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1075 TALRYLESALAKN 1087 (1236)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999853
No 355
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=84.14 E-value=43 Score=32.52 Aligned_cols=150 Identities=13% Similarity=0.106 Sum_probs=97.9
Q ss_pred HHHHHHHHHHH---cCCC-hHHHHHHHHHHHH-HcCCcHHHHHHHHHHHhcCC--c--hhHHHHHHHHHHHHHHcCCHHH
Q 024858 11 AAIVLFWKAIN---AGDR-VDSALKDMAVVMK-QLDRSEEAIEAIKSFRGLCS--K--QSQESLDNVLIDLYKKCGKVEE 81 (261)
Q Consensus 11 ~A~~~~~~al~---~~p~-~~~al~~Lg~~~~-~~g~~~eAi~~~~~~~~~~P--~--~~~~~~~~~L~~ly~~~g~~~e 81 (261)
-|+.+++-+++ ..|. .+.+...+|.+|. ....+++|..++++++.+.. + +-......+|+.+|.+.+...
T Consensus 39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~- 117 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA- 117 (608)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-
Confidence 35667766663 2221 2344666888886 78999999999999987763 3 112233467889999998888
Q ss_pred HHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHH--HHHHH-HHHHHHcCCHHHHHHHHHHHHhhC--CCc
Q 024858 82 QIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSR--LLGNL-AWAYMQKTNFMAAEVVYQKAQMID--PDA 156 (261)
Q Consensus 82 A~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~--~~~~L-g~~~~~~g~~~eA~~~~~~al~~~--P~~ 156 (261)
|...+++.++.... . +..+. +..-+ ...+...+++..|+..++...... +.+
T Consensus 118 a~~~l~~~I~~~~~--------------~---------~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d 174 (608)
T PF10345_consen 118 ALKNLDKAIEDSET--------------Y---------GHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGD 174 (608)
T ss_pred HHHHHHHHHHHHhc--------------c---------CchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCC
Confidence 99999998886321 0 00111 11122 222233389999999999999876 344
Q ss_pred hh---hh--hHHHHHHHcCCHHHHHHHHHHHHh
Q 024858 157 NK---AC--NLGLCLIKRTRYNEARSVLEDVLY 184 (261)
Q Consensus 157 ~~---~~--~L~~~l~~~g~~~eA~~~~~~~l~ 184 (261)
+. .+ .-+.+....+..+++++...++..
T Consensus 175 ~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~ 207 (608)
T PF10345_consen 175 PAVFVLASLSEALLHLRRGSPDDVLELLQRAIA 207 (608)
T ss_pred HHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Confidence 43 22 236677777888889988887754
No 356
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=84.04 E-value=18 Score=34.08 Aligned_cols=67 Identities=9% Similarity=-0.014 Sum_probs=57.4
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCC-HHHHHHHHHHHHhCCC
Q 024858 121 ETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTR-YNEARSVLEDVLYGRI 187 (261)
Q Consensus 121 ~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~-~~eA~~~~~~~l~~~~ 187 (261)
.+...|.+-.....+.+.+.+--..|.+++..+|++++ |..-+.-..+-+. .+.|..++.+.|..++
T Consensus 103 ~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~np 171 (568)
T KOG2396|consen 103 GDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNP 171 (568)
T ss_pred CCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCC
Confidence 35667888777777777799999999999999999999 9988887777776 9999999999999854
No 357
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=83.76 E-value=2.4 Score=22.86 Aligned_cols=29 Identities=14% Similarity=0.104 Sum_probs=22.9
Q ss_pred CCHHHHHHHHHHHHhhCCCchh-hhhHHHH
Q 024858 137 TNFMAAEVVYQKAQMIDPDANK-ACNLGLC 165 (261)
Q Consensus 137 g~~~eA~~~~~~al~~~P~~~~-~~~L~~~ 165 (261)
|+.+.|...|++++...|.+.. |...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 5678889999999999998887 7765543
No 358
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=83.38 E-value=10 Score=29.35 Aligned_cols=70 Identities=10% Similarity=0.033 Sum_probs=51.2
Q ss_pred CChHHHHHHHHHHHHHc---CCcHHHHHHHHHHHh-cCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 024858 24 DRVDSALKDMAVVMKQL---DRSEEAIEAIKSFRG-LCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIY 94 (261)
Q Consensus 24 p~~~~al~~Lg~~~~~~---g~~~eAi~~~~~~~~-~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~ 94 (261)
.-..+..++++-++... .+..+.|.+++..++ -.|..-.+ -...|+--+.+.|+|++|..+.+..|+..|
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe-~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~ 102 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRE-CLYYLAVGHYRLKEYSKSLRYVDALLETEP 102 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchh-hhhhhHHHHHHHhhHHHHHHHHHHHHhhCC
Confidence 33455678888888554 456778889999886 55543223 334477788999999999999999999855
No 359
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=83.38 E-value=3 Score=22.75 Aligned_cols=27 Identities=44% Similarity=0.562 Sum_probs=22.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 024858 66 DNVLIDLYKKCGKVEEQIEMLKRKLRL 92 (261)
Q Consensus 66 ~~~L~~ly~~~g~~~eA~~~~~~al~l 92 (261)
++.+...|.+.|++++|.++|++..+.
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~~ 29 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLER 29 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 455778889999999999999997653
No 360
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.22 E-value=27 Score=30.48 Aligned_cols=126 Identities=16% Similarity=0.179 Sum_probs=77.2
Q ss_pred cCCcHHHHHHHHHHHhcCCc--hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhh
Q 024858 40 LDRSEEAIEAIKSFRGLCSK--QSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVS 117 (261)
Q Consensus 40 ~g~~~eAi~~~~~~~~~~P~--~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (261)
....++|+.-+.+++.+.|. ++-..+..-...++.++|++++-.+.|++.|..+.+....|. .
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNy-S-------------- 104 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNY-S-------------- 104 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccc-c--------------
Confidence 35889999999999999986 222222334567889999999999999999986532211110 0
Q ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchh-hh----hHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 118 VRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMI--DPDANK-AC----NLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 118 l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~-~~----~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
....+++-..-....+.+--..+|+..|.. +..|.. |+ .||..|...|.|..-..++++.-..
T Consensus 105 -----EKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~S 174 (440)
T KOG1464|consen 105 -----EKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQS 174 (440)
T ss_pred -----HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHH
Confidence 011122211112233333333444444432 233444 53 5899999999998888888876654
No 361
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=81.74 E-value=20 Score=27.07 Aligned_cols=36 Identities=33% Similarity=0.376 Sum_probs=20.8
Q ss_pred HcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHc
Q 024858 39 QLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKC 76 (261)
Q Consensus 39 ~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~ 76 (261)
+.+...+.+..++.++..++. ...+.+.|+.+|.+.
T Consensus 19 ~~~~~~~l~~yLe~~~~~~~~--~~~~~~~li~ly~~~ 54 (140)
T smart00299 19 KRNLLEELIPYLESALKLNSE--NPALQTKLIELYAKY 54 (140)
T ss_pred hCCcHHHHHHHHHHHHccCcc--chhHHHHHHHHHHHH
Confidence 445666666666666666543 234556666666544
No 362
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=81.72 E-value=21 Score=30.90 Aligned_cols=86 Identities=17% Similarity=0.157 Sum_probs=60.0
Q ss_pred HHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhh
Q 024858 74 KKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKT-NFMAAEVVYQKAQMI 152 (261)
Q Consensus 74 ~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g-~~~eA~~~~~~al~~ 152 (261)
.++|+++-|..++.|+-.+.+... + . ... ...++.+|.|.-....+ ++++|...+++|.++
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~-----~-~------~~~------~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~ 65 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLD-----P-D------MAE------ELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDI 65 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCC-----c-H------HHH------HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 478999999999999766531000 0 0 000 13568899999999999 999999999999988
Q ss_pred ----CC---Cch-------h-hhhHHHHHHHcCCHHHHHH
Q 024858 153 ----DP---DAN-------K-ACNLGLCLIKRTRYNEARS 177 (261)
Q Consensus 153 ----~P---~~~-------~-~~~L~~~l~~~g~~~eA~~ 177 (261)
.+ ..+ . ...|+.+|...+.++...+
T Consensus 66 l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~k 105 (278)
T PF08631_consen 66 LEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEK 105 (278)
T ss_pred HHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHH
Confidence 32 111 1 2457889988887664444
No 363
>PF13041 PPR_2: PPR repeat family
Probab=80.96 E-value=3.5 Score=25.33 Aligned_cols=32 Identities=19% Similarity=0.203 Sum_probs=25.9
Q ss_pred CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 154 PDANKACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 154 P~~~~~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
|+-..+..+-..|.+.|++++|.++|++....
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 44444677888899999999999999998875
No 364
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=80.90 E-value=8.2 Score=33.88 Aligned_cols=57 Identities=18% Similarity=0.113 Sum_probs=44.0
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 024858 33 MAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLR 91 (261)
Q Consensus 33 Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~ 91 (261)
.+.-|...|.+.+|+++.++++.++|-+ +..+..|-.+|...|+-=+|+..|++.-+
T Consensus 285 va~~yle~g~~neAi~l~qr~ltldpL~--e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 285 VARAYLEAGKPNEAIQLHQRALTLDPLS--EQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHcCChHHHHHHHHHHhhcChhh--hHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 4566788899999999999999999962 33445566777888998888888887433
No 365
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=80.76 E-value=11 Score=38.35 Aligned_cols=89 Identities=16% Similarity=0.183 Sum_probs=66.0
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCCh---HHHHHHHHHHHHHc----C---CcHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Q 024858 3 QLVQKDPEAAIVLFWKAINAGDRV---DSALKDMAVVMKQL----D---RSEEAIEAIKSFRGLCSKQSQESLDNVLIDL 72 (261)
Q Consensus 3 ~~~~~~~~~A~~~~~~al~~~p~~---~~al~~Lg~~~~~~----g---~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~l 72 (261)
-|.++.++.|+..|+++-..-|+- -+|.+.+|+.+..+ | .+.+|+..+++... .|.-+-+.++. +-+
T Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~ 561 (932)
T PRK13184 485 FLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-GVGAPLEYLGK--ALV 561 (932)
T ss_pred HHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-CCCCchHHHhH--HHH
Confidence 467889999999999999888764 46788889888543 3 35666666655432 24433444554 458
Q ss_pred HHHcCCHHHHHHHHHHHHHhhc
Q 024858 73 YKKCGKVEEQIEMLKRKLRLIY 94 (261)
Q Consensus 73 y~~~g~~~eA~~~~~~al~l~~ 94 (261)
|.+.|+++|-+++|.-+++..|
T Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~ 583 (932)
T PRK13184 562 YQRLGEYNEEIKSLLLALKRYS 583 (932)
T ss_pred HHHhhhHHHHHHHHHHHHHhcC
Confidence 9999999999999999999865
No 366
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=78.81 E-value=9.6 Score=36.15 Aligned_cols=86 Identities=12% Similarity=-0.028 Sum_probs=64.3
Q ss_pred CCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHH---HHHhcCCchhHHHHHHHHHHHHHHcCCHHHHH
Q 024858 7 KDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIK---SFRGLCSKQSQESLDNVLIDLYKKCGKVEEQI 83 (261)
Q Consensus 7 ~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~---~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~ 83 (261)
..+..|+..|.+++..-|.....+.+-+.++...+=...+..+++ .+++++|. ....+.-|+..+.+.+++.+|+
T Consensus 388 ~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s--~~kah~~la~aL~el~r~~eal 465 (758)
T KOG1310|consen 388 SIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPS--IQKAHFRLARALNELTRYLEAL 465 (758)
T ss_pred HHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChH--HHHHHHHHHHHHHHHhhHHHhh
Confidence 346678899999999999988888888888887765555555554 56777776 3334556888999999999999
Q ss_pred HHHHHHHHhhc
Q 024858 84 EMLKRKLRLIY 94 (261)
Q Consensus 84 ~~~~~al~l~~ 94 (261)
+.-..+.-..|
T Consensus 466 ~~~~alq~~~P 476 (758)
T KOG1310|consen 466 SCHWALQMSFP 476 (758)
T ss_pred hhHHHHhhcCc
Confidence 98776544434
No 367
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=78.63 E-value=64 Score=30.92 Aligned_cols=171 Identities=15% Similarity=0.075 Sum_probs=96.4
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHcCC--------------cHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcC--
Q 024858 14 VLFWKAINAGDRVDSALKDMAVVMKQLDR--------------SEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCG-- 77 (261)
Q Consensus 14 ~~~~~al~~~p~~~~al~~Lg~~~~~~g~--------------~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g-- 77 (261)
-.|++.+..=+-.++.|+.-+.-+...++ -+|+...|++++..--.. ...+...+++--...-
T Consensus 266 yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~-~~~Ly~~~a~~eE~~~~~ 344 (656)
T KOG1914|consen 266 YAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKE-NKLLYFALADYEESRYDD 344 (656)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHhccc
Confidence 34556665555666666665444444444 567777888877643221 1223333332111111
Q ss_pred -CHHHHHHHHHHHHHhhc--chhhhcCcchHHHhhch-----hhhh-h-hcCCCcHHHHHHHH-HHHHHcCCHHHHHHHH
Q 024858 78 -KVEEQIEMLKRKLRLIY--QGEAFNGKPTKTARSHG-----KKFQ-V-SVRQETSRLLGNLA-WAYMQKTNFMAAEVVY 146 (261)
Q Consensus 78 -~~~eA~~~~~~al~l~~--~~~~~~~~~~~~~~~~~-----~~~~-~-~l~p~~~~~~~~Lg-~~~~~~g~~~eA~~~~ 146 (261)
+++.--..|++++.+.. +.-.+.......-+..| ..|. . ...-....++..-| .=|.-+++..-|...|
T Consensus 345 n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIF 424 (656)
T KOG1914|consen 345 NKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIF 424 (656)
T ss_pred chhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHH
Confidence 25556677777777632 11222111111111111 0111 0 00000112222222 2245689999999999
Q ss_pred HHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 147 QKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 147 ~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
+--|...||.+. .......+...|+-..|..+|++++..
T Consensus 425 eLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 425 ELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred HHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 999999999999 677889999999999999999999996
No 368
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=78.55 E-value=7 Score=34.62 Aligned_cols=70 Identities=9% Similarity=0.055 Sum_probs=59.8
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhh-HHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 024858 120 QETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACN-LGLCLIKRTRYNEARSVLEDVLYGRIPG 189 (261)
Q Consensus 120 p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~-L~~~l~~~g~~~eA~~~~~~~l~~~~~~ 189 (261)
|+++..|...+..-...|.|.+--..|-+++..+|.|.+ |.. -+.-+...++++.+...+.+.+..++..
T Consensus 104 f~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~ 175 (435)
T COG5191 104 FNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS 175 (435)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence 567888888777777788999999999999999999999 875 6777888999999999999999985433
No 369
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=78.41 E-value=4.9 Score=27.65 Aligned_cols=28 Identities=25% Similarity=0.024 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 024858 124 RLLGNLAWAYMQKTNFMAAEVVYQKAQM 151 (261)
Q Consensus 124 ~~~~~Lg~~~~~~g~~~eA~~~~~~al~ 151 (261)
..+...+.-+.+.|++.+|+.+|+++++
T Consensus 7 ~~~a~~AVe~D~~gr~~eAi~~Y~~aIe 34 (75)
T cd02682 7 RKYAINAVKAEKEGNAEDAITNYKKAIE 34 (75)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3456667777888888888887777654
No 370
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=78.18 E-value=21 Score=33.62 Aligned_cols=122 Identities=8% Similarity=-0.058 Sum_probs=84.1
Q ss_pred HcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhc
Q 024858 39 QLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSV 118 (261)
Q Consensus 39 ~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l 118 (261)
..|+.-.|-.-...+++..|.++. +..+.+.+....|.|+.|.+.+.-+-++.-.
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~--~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s----------------------- 355 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPV--LIQLRSVIFSHLGYYEQAYQDISDVEKIIGT----------------------- 355 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCch--hhHHHHHHHHHhhhHHHHHHHhhchhhhhcC-----------------------
Confidence 447777777778888888887542 3334567778889999888766654443210
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 024858 119 RQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIP 188 (261)
Q Consensus 119 ~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~~~ 188 (261)
...+...+-.-....|++++|...-.-.|.-.-.+++ ..--+..-...|-++++...+++++..+++
T Consensus 356 ---~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 356 ---TDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred ---CchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 1123344445567788999999988888877777776 333345556778899999999999987543
No 371
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=78.15 E-value=8.2 Score=31.31 Aligned_cols=47 Identities=19% Similarity=0.051 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 024858 45 EAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIY 94 (261)
Q Consensus 45 eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~ 94 (261)
..++..++.++..|+ .. ....++.++...|+.++|....+++..+.|
T Consensus 129 ~~~~~a~~~l~~~P~--~~-~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 129 AYIEWAERLLRRRPD--PN-VYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHhCCC--HH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 344555666667776 22 333366677778888888888888777765
No 372
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=77.51 E-value=20 Score=35.30 Aligned_cols=59 Identities=8% Similarity=0.052 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh----------------------hCCCchh-hhhHHHHHHHcCCHHHHHHHH
Q 024858 123 SRLLGNLAWAYMQKTNFMAAEVVYQKAQM----------------------IDPDANK-ACNLGLCLIKRTRYNEARSVL 179 (261)
Q Consensus 123 ~~~~~~Lg~~~~~~g~~~eA~~~~~~al~----------------------~~P~~~~-~~~L~~~l~~~g~~~eA~~~~ 179 (261)
.+++.++|..+..+..+++|.++|.+.=. .=|++.. .-.+|..+...|--++|.+.|
T Consensus 796 e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~ 875 (1189)
T KOG2041|consen 796 EDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAY 875 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHH
Confidence 46888999999999999999988875421 1266665 456777777777777777766
Q ss_pred HH
Q 024858 180 ED 181 (261)
Q Consensus 180 ~~ 181 (261)
-+
T Consensus 876 Lr 877 (1189)
T KOG2041|consen 876 LR 877 (1189)
T ss_pred Hh
Confidence 44
No 373
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=77.33 E-value=13 Score=31.32 Aligned_cols=54 Identities=13% Similarity=0.055 Sum_probs=25.8
Q ss_pred cCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCc
Q 024858 6 QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK 59 (261)
Q Consensus 6 ~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~ 59 (261)
++.+++|+...+.-++..|.+...-+.+-.+|.-.|++++|...++-+-.+.|+
T Consensus 14 ~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~ 67 (273)
T COG4455 14 DNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQ 67 (273)
T ss_pred hccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcc
Confidence 344444444444444444444444444444444444444444444444444444
No 374
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=77.26 E-value=17 Score=35.52 Aligned_cols=17 Identities=24% Similarity=0.196 Sum_probs=11.0
Q ss_pred HHHHHHHcCCcHHHHHH
Q 024858 33 MAVVMKQLDRSEEAIEA 49 (261)
Q Consensus 33 Lg~~~~~~g~~~eAi~~ 49 (261)
-+.+++..|+.++|+.+
T Consensus 709 AAEmLiSaGe~~KAi~i 725 (1081)
T KOG1538|consen 709 AAEMLISAGEHVKAIEI 725 (1081)
T ss_pred HHHHhhcccchhhhhhh
Confidence 45566667777777654
No 375
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=77.17 E-value=44 Score=28.68 Aligned_cols=27 Identities=22% Similarity=0.177 Sum_probs=22.0
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 024858 121 ETSRLLGNLAWAYMQKTNFMAAEVVYQ 147 (261)
Q Consensus 121 ~~~~~~~~Lg~~~~~~g~~~eA~~~~~ 147 (261)
.+|+.|..+|..|.+.|++.+|..+|-
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 368899999999999999999998874
No 376
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.85 E-value=36 Score=33.23 Aligned_cols=64 Identities=11% Similarity=0.045 Sum_probs=50.8
Q ss_pred HHHHHHHHHcCCcHHHHHHHHHHHhcCCch----hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 024858 31 KDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ----SQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIY 94 (261)
Q Consensus 31 ~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~----~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~ 94 (261)
.+-|.-+....+|..+++.|+..++..|.| .-.-....|.-+|....+.|.|.++++.|-+.+|
T Consensus 358 Wn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~ 425 (872)
T KOG4814|consen 358 WNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDR 425 (872)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcc
Confidence 345667788899999999999999888853 1133456788999999999999999999887643
No 377
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=76.29 E-value=52 Score=28.63 Aligned_cols=123 Identities=7% Similarity=-0.005 Sum_probs=74.0
Q ss_pred HHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhh
Q 024858 35 VVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKC-GKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKK 113 (261)
Q Consensus 35 ~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~-g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~ 113 (261)
.++....+...|.++.+.++.++|.+ .+.+.. --.++... .+..+-.+.+...++-+
T Consensus 51 AI~~~~E~S~RAl~LT~d~i~lNpAn-YTVW~y-Rr~iL~~l~~dL~~El~~l~eI~e~n-------------------- 108 (318)
T KOG0530|consen 51 AIIAKNEKSPRALQLTEDAIRLNPAN-YTVWQY-RRVILRHLMSDLNKELEYLDEIIEDN-------------------- 108 (318)
T ss_pred HHHhccccCHHHHHHHHHHHHhCccc-chHHHH-HHHHHHHhHHHHHHHHHHHHHHHHhC--------------------
Confidence 34445556667777778888888874 222221 11222222 22344444444443322
Q ss_pred hhhhcCCCcHHHHHHHHHHHHHcCCHH-HHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 114 FQVSVRQETSRLLGNLAWAYMQKTNFM-AAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 114 ~~~~l~p~~~~~~~~Lg~~~~~~g~~~-eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
|.+-.+|...-.+....|++. .-+++.++++..+..|-. |..--.++..-+.++.-+.+..+.+..
T Consensus 109 ------pKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~ 176 (318)
T KOG0530|consen 109 ------PKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEE 176 (318)
T ss_pred ------ccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 334456777777777777777 677777777777776666 666666777777777777777777775
No 378
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=76.27 E-value=4.8 Score=21.45 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=12.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Q 024858 126 LGNLAWAYMQKTNFMAAEVVYQKA 149 (261)
Q Consensus 126 ~~~Lg~~~~~~g~~~eA~~~~~~a 149 (261)
|+.+=.+|.+.|++++|...|++-
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M 26 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEM 26 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHH
Confidence 344444555555555555555543
No 379
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=76.19 E-value=6 Score=26.35 Aligned_cols=28 Identities=21% Similarity=0.061 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 024858 125 LLGNLAWAYMQKTNFMAAEVVYQKAQMI 152 (261)
Q Consensus 125 ~~~~Lg~~~~~~g~~~eA~~~~~~al~~ 152 (261)
.+.+.|.-+.+.|++++|+.+|++++..
T Consensus 7 ~~~~~Av~~D~~g~~~~A~~~Y~~ai~~ 34 (69)
T PF04212_consen 7 ELIKKAVEADEAGNYEEALELYKEAIEY 34 (69)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3456677778888888888888877654
No 380
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=75.62 E-value=8.5 Score=20.52 Aligned_cols=25 Identities=16% Similarity=0.069 Sum_probs=13.0
Q ss_pred CHHHHHHHHHHHHHcCCChHHHHHH
Q 024858 8 DPEAAIVLFWKAINAGDRVDSALKD 32 (261)
Q Consensus 8 ~~~~A~~~~~~al~~~p~~~~al~~ 32 (261)
+.+.|...|++++...|..++.|..
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~ 26 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLK 26 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHH
Confidence 4455555555555555555544443
No 381
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=73.66 E-value=10 Score=20.63 Aligned_cols=26 Identities=15% Similarity=0.310 Sum_probs=21.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 024858 66 DNVLIDLYKKCGKVEEQIEMLKRKLR 91 (261)
Q Consensus 66 ~~~L~~ly~~~g~~~eA~~~~~~al~ 91 (261)
++.+...+.+.|+++.|..+++...+
T Consensus 4 y~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 4 YNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45677888999999999999988655
No 382
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.30 E-value=91 Score=30.09 Aligned_cols=87 Identities=18% Similarity=0.075 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHH-cC-----------CChHHHHHHHHHHHHHcCCcHHHHHHHHHHH-----hcCCc------------
Q 024858 9 PEAAIVLFWKAIN-AG-----------DRVDSALKDMAVVMKQLDRSEEAIEAIKSFR-----GLCSK------------ 59 (261)
Q Consensus 9 ~~~A~~~~~~al~-~~-----------p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~-----~~~P~------------ 59 (261)
+++|...|+.|.. .+ |=+.+.+..++.+...+|+.+-|..++++++ .+.|.
T Consensus 254 Yeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y 333 (665)
T KOG2422|consen 254 YEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPY 333 (665)
T ss_pred HHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcc
Confidence 5677777877765 34 4467888999999999999999999887763 12221
Q ss_pred -hh-HHHHHHHH---HHHHHHcCCHHHHHHHHHHHHHhhcc
Q 024858 60 -QS-QESLDNVL---IDLYKKCGKVEEQIEMLKRKLRLIYQ 95 (261)
Q Consensus 60 -~~-~~~~~~~L---~~ly~~~g~~~eA~~~~~~al~l~~~ 95 (261)
.+ +...+..| ..-+.+.|-+.-|.+..+-.+.+.|.
T Consensus 334 ~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~ 374 (665)
T KOG2422|consen 334 IYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPS 374 (665)
T ss_pred cchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCc
Confidence 00 11111111 12336789999999999999998765
No 383
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=73.30 E-value=15 Score=29.68 Aligned_cols=32 Identities=16% Similarity=0.084 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 024858 123 SRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDP 154 (261)
Q Consensus 123 ~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P 154 (261)
+.++.+++.++..+|+.+||....+++..+.|
T Consensus 144 ~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 144 PNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 45666677777777777777777777777766
No 384
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=73.00 E-value=70 Score=28.61 Aligned_cols=103 Identities=17% Similarity=0.189 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 024858 64 SLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAE 143 (261)
Q Consensus 64 ~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~ 143 (261)
.....|+.+|.+.++|.+|...+.- .|... | .+.. ..+-+ ......+|.+|...++..+|+
T Consensus 104 ~irl~LAsiYE~Eq~~~~aaq~L~~----I~~~t---g--~~~~-d~~~k---------l~l~iriarlyLe~~d~veae 164 (399)
T KOG1497|consen 104 SIRLHLASIYEKEQNWRDAAQVLVG----IPLDT---G--QKAY-DVEQK---------LLLCIRIARLYLEDDDKVEAE 164 (399)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhc----cCccc---c--hhhh-hhHHH---------HHHHHHHHHHHHhcCcHHHHH
Confidence 4557799999999999999976654 22111 0 0000 00000 135677999999999999999
Q ss_pred HHHHHHHh--hCCCchh-hh----hHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 144 VVYQKAQM--IDPDANK-AC----NLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 144 ~~~~~al~--~~P~~~~-~~----~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
.+-.++=- .+..|.. .. --+.++-..++|-||...|-++...
T Consensus 165 ~~inRaSil~a~~~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyels~~ 213 (399)
T KOG1497|consen 165 AYINRASILQAESSNEQLQIEYKVCYARVLDYKRKFLEAAQRYYELSQR 213 (399)
T ss_pred HHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98887632 3334443 22 2367777889999999888777664
No 385
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=72.69 E-value=9.2 Score=26.31 Aligned_cols=19 Identities=26% Similarity=0.188 Sum_probs=15.3
Q ss_pred HHcCCHHHHHHHHHHHHhh
Q 024858 134 MQKTNFMAAEVVYQKAQMI 152 (261)
Q Consensus 134 ~~~g~~~eA~~~~~~al~~ 152 (261)
...|+|++|+.+|..+++.
T Consensus 17 D~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 17 DEKGNAEEAIELYTEAVEL 35 (75)
T ss_pred hHhhhHHHHHHHHHHHHHH
Confidence 4567889999999888874
No 386
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.66 E-value=64 Score=31.35 Aligned_cols=27 Identities=22% Similarity=0.072 Sum_probs=19.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 024858 66 DNVLIDLYKKCGKVEEQIEMLKRKLRL 92 (261)
Q Consensus 66 ~~~L~~ly~~~g~~~eA~~~~~~al~l 92 (261)
+.-||++-...|++..|.+++.++-.+
T Consensus 669 w~~Lg~~al~~~~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 669 WRQLGDAALSAGELPLASECFLRARDL 695 (794)
T ss_pred HHHHHHHHhhcccchhHHHHHHhhcch
Confidence 344777777888888888888876543
No 387
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=71.89 E-value=28 Score=24.16 Aligned_cols=47 Identities=17% Similarity=0.120 Sum_probs=24.1
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhC-----CCCC--CcchhhHHHHHHHHHHHH
Q 024858 161 NLGLCLIKRTRYNEARSVLEDVLYG-----RIPG--CEDGRTRKRAEELLLELE 207 (261)
Q Consensus 161 ~L~~~l~~~g~~~eA~~~~~~~l~~-----~~~~--~~~~~~~~~a~~~l~~l~ 207 (261)
+.|..+-+.|+.++|+.+|++++.. ..|. ......+++|..+-..+.
T Consensus 13 ~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~ai~~~~~~~~~~w~~ar~~~~Km~ 66 (79)
T cd02679 13 SKALRADEWGDKEQALAHYRKGLRELEEGIAVPVPSAGVGSQWERARRLQQKMK 66 (79)
T ss_pred HHHhhhhhcCCHHHHHHHHHHHHHHHHHHcCCCCCcccccHHHHHHHHHHHHHH
Confidence 3444455556777777777766553 1111 122344555666555543
No 388
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=70.77 E-value=10 Score=20.42 Aligned_cols=22 Identities=27% Similarity=0.199 Sum_probs=10.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHh
Q 024858 163 GLCLIKRTRYNEARSVLEDVLY 184 (261)
Q Consensus 163 ~~~l~~~g~~~eA~~~~~~~l~ 184 (261)
-..|.+.|++++|.++|.+...
T Consensus 7 i~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 7 IDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 3444455555555555554443
No 389
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=69.53 E-value=50 Score=27.96 Aligned_cols=54 Identities=11% Similarity=-0.021 Sum_probs=37.3
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 132 AYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 132 ~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
-+.+.+...+|+...+.-++-+|.+.. ..-|-..|.-.|+++.|...++-+-..
T Consensus 10 eLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l 64 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATL 64 (273)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhc
Confidence 345666777777777777777777776 666666677777777777776666554
No 390
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=69.00 E-value=7.4 Score=34.42 Aligned_cols=29 Identities=28% Similarity=0.229 Sum_probs=23.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCchh
Q 024858 130 AWAYMQKTNFMAAEVVYQKAQMIDPDANK 158 (261)
Q Consensus 130 g~~~~~~g~~~eA~~~~~~al~~~P~~~~ 158 (261)
|....+.|..-+|+..|+.|+++.||-..
T Consensus 26 av~~Eq~G~l~dai~fYR~AlqI~~diEs 54 (366)
T KOG2997|consen 26 AVLKEQDGSLYDAINFYRDALQIVPDIES 54 (366)
T ss_pred HHHHhhcCcHHHHHHHHHhhhcCCchHHH
Confidence 33346788999999999999999998766
No 391
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=68.74 E-value=1.2e+02 Score=29.50 Aligned_cols=156 Identities=15% Similarity=0.069 Sum_probs=99.2
Q ss_pred cCCHHHHHHHHHHHHHcC--CChHHH----HHHHHHHHHHcCCcHHHHHHHHHHHhcCCc---hhHHHHHHHH-HHHHHH
Q 024858 6 QKDPEAAIVLFWKAINAG--DRVDSA----LKDMAVVMKQLDRSEEAIEAIKSFRGLCSK---QSQESLDNVL-IDLYKK 75 (261)
Q Consensus 6 ~~~~~~A~~~~~~al~~~--p~~~~a----l~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~---~~~~~~~~~L-~~ly~~ 75 (261)
..+++.|+..+.+++... ++..+. ...++.++.+.|... |...+++.+...-+ .++.....++ +.++..
T Consensus 73 T~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~ 151 (608)
T PF10345_consen 73 TENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQ 151 (608)
T ss_pred cCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHh
Confidence 467999999999998654 444332 345788888888888 99999988765432 3344444444 555555
Q ss_pred cCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---
Q 024858 76 CGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMI--- 152 (261)
Q Consensus 76 ~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~--- 152 (261)
.+++..|++.++....... ..+.... ..-....-|.+....+..++++...+++...
T Consensus 152 ~~d~~~Al~~L~~~~~~a~--------------~~~d~~~------~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~ 211 (608)
T PF10345_consen 152 HKDYNAALENLQSIAQLAN--------------QRGDPAV------FVLASLSEALLHLRRGSPDDVLELLQRAIAQARS 211 (608)
T ss_pred cccHHHHHHHHHHHHHHhh--------------hcCCHHH------HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhh
Confidence 5899999999999887631 0111000 0012334577778888899999988888432
Q ss_pred ---CCCc----hh-hhhH--HHHHHHcCCHHHHHHHHHHH
Q 024858 153 ---DPDA----NK-ACNL--GLCLIKRTRYNEARSVLEDV 182 (261)
Q Consensus 153 ---~P~~----~~-~~~L--~~~l~~~g~~~eA~~~~~~~ 182 (261)
+|+. .. +..+ -.+++..|+++.+....+++
T Consensus 212 ~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 212 LQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred cccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2222 12 2222 33567778877777766543
No 392
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=68.69 E-value=13 Score=25.64 Aligned_cols=28 Identities=21% Similarity=0.249 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 024858 125 LLGNLAWAYMQKTNFMAAEVVYQKAQMI 152 (261)
Q Consensus 125 ~~~~Lg~~~~~~g~~~eA~~~~~~al~~ 152 (261)
.+...|.-+.+.|+|++|+.+|..+++.
T Consensus 8 ~~a~~Ave~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 8 QFARLAVQRDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3455667777888888888888887764
No 393
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=68.67 E-value=6.7 Score=26.98 Aligned_cols=34 Identities=32% Similarity=0.287 Sum_probs=20.5
Q ss_pred CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc
Q 024858 8 DPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGL 56 (261)
Q Consensus 8 ~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~ 56 (261)
++++|+.+..+|+..| ..|++++|+.+|..++..
T Consensus 2 ~l~kai~Lv~~A~~eD---------------~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 2 DLERAHFLVTQAFDED---------------EKGNAEEAIELYTEAVEL 35 (75)
T ss_pred CHHHHHHHHHHHHHhh---------------HhhhHHHHHHHHHHHHHH
Confidence 3456666666665432 336777777777766543
No 394
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=68.39 E-value=81 Score=27.48 Aligned_cols=86 Identities=15% Similarity=0.078 Sum_probs=56.0
Q ss_pred hcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHc-CCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHH-HH
Q 024858 5 VQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQL-DRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVE-EQ 82 (261)
Q Consensus 5 ~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~-g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~-eA 82 (261)
.......|..+.+.+|..+|.+-..|+.--.++..+ .+..+-.+.+...+.-+|.+-+...+ --.+....|++. .-
T Consensus 55 ~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHH--Rr~ive~l~d~s~rE 132 (318)
T KOG0530|consen 55 KNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHH--RRVIVELLGDPSFRE 132 (318)
T ss_pred ccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHH--HHHHHHHhcCcccch
Confidence 344556677888888888888877777766666554 45677778889999999985222111 112224556666 66
Q ss_pred HHHHHHHHHh
Q 024858 83 IEMLKRKLRL 92 (261)
Q Consensus 83 ~~~~~~al~l 92 (261)
++..+.++..
T Consensus 133 Lef~~~~l~~ 142 (318)
T KOG0530|consen 133 LEFTKLMLDD 142 (318)
T ss_pred HHHHHHHHhc
Confidence 7777777764
No 395
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=68.30 E-value=35 Score=37.99 Aligned_cols=118 Identities=17% Similarity=0.141 Sum_probs=73.6
Q ss_pred HHHHHHHHcCCcHHHHHHHHHHH-hcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhc
Q 024858 32 DMAVVMKQLDRSEEAIEAIKSFR-GLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSH 110 (261)
Q Consensus 32 ~Lg~~~~~~g~~~eAi~~~~~~~-~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~ 110 (261)
.|+.+-...|.|.+|+.++++-. .--+.+..+.++.+|=.+|...+++|.-..++..-... |
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~-~---------------- 1450 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFAD-P---------------- 1450 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcC-c----------------
Confidence 46667777778888888877741 11122334445555555777777777766655531111 1
Q ss_pred hhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHH
Q 024858 111 GKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLE 180 (261)
Q Consensus 111 ~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~ 180 (261)
-+.+.-......|++..|..+|.++++.+|+... +...-......|.++..+-...
T Consensus 1451 --------------sl~~qil~~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~d 1507 (2382)
T KOG0890|consen 1451 --------------SLYQQILEHEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLD 1507 (2382)
T ss_pred --------------cHHHHHHHHHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhc
Confidence 1233344567789999999999999999999776 5545555555556655555443
No 396
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=67.24 E-value=32 Score=29.20 Aligned_cols=59 Identities=14% Similarity=0.080 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch------h-hhhHHHHHHHcCCHHHHHHHHHHHH
Q 024858 125 LLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN------K-ACNLGLCLIKRTRYNEARSVLEDVL 183 (261)
Q Consensus 125 ~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~------~-~~~L~~~l~~~g~~~eA~~~~~~~l 183 (261)
+...+|.-|...|++++|+++|+.+....-... . ...|..|....|+.++.+.+.-+++
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 456788888888899999888888865432211 1 3457778888888888877765544
No 397
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=66.23 E-value=17 Score=24.92 Aligned_cols=22 Identities=23% Similarity=0.045 Sum_probs=15.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHhh
Q 024858 131 WAYMQKTNFMAAEVVYQKAQMI 152 (261)
Q Consensus 131 ~~~~~~g~~~eA~~~~~~al~~ 152 (261)
.-....|++++|+.+|..+++.
T Consensus 14 v~~D~~g~y~eA~~lY~~ale~ 35 (75)
T cd02684 14 VKKDQRGDAAAALSLYCSALQY 35 (75)
T ss_pred HHHHHhccHHHHHHHHHHHHHH
Confidence 3345667888888888877764
No 398
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=65.66 E-value=12 Score=25.86 Aligned_cols=27 Identities=26% Similarity=0.187 Sum_probs=19.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 024858 126 LGNLAWAYMQKTNFMAAEVVYQKAQMI 152 (261)
Q Consensus 126 ~~~Lg~~~~~~g~~~eA~~~~~~al~~ 152 (261)
+...|.-+.+.|++++|+.+|.+++..
T Consensus 9 l~~~Ave~D~~g~y~eAl~~Y~~aie~ 35 (77)
T cd02683 9 VLKRAVELDQEGRFQEALVCYQEGIDL 35 (77)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 455667777888888888888877653
No 399
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.55 E-value=74 Score=26.00 Aligned_cols=122 Identities=13% Similarity=0.071 Sum_probs=79.1
Q ss_pred hcCCHHHHHHHHHHHHHcCCCh--HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCc--hhHHHHHHHHHHHHHHcCCHH
Q 024858 5 VQKDPEAAIVLFWKAINAGDRV--DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK--QSQESLDNVLIDLYKKCGKVE 80 (261)
Q Consensus 5 ~~~~~~~A~~~~~~al~~~p~~--~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~--~~~~~~~~~L~~ly~~~g~~~ 80 (261)
.++..++|...|...-+.+-.. .-+...+|.+..+.|+-.+|+..|..+-+..|- -.......--+-++...|-|+
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~ 149 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYD 149 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHH
Confidence 3566777777776544433222 334566899999999999999999988776553 111112222345567788888
Q ss_pred HHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 024858 81 EQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQM 151 (261)
Q Consensus 81 eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~ 151 (261)
+-..-.+.+ .- +++ |=-..+.-.||.+-.+.|++..|...|.+...
T Consensus 150 dV~srvepL-a~--d~n----------------------~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 150 DVSSRVEPL-AG--DGN----------------------PMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHhhhc-cC--CCC----------------------hhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 766543331 11 011 01134567799999999999999999999877
No 400
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=65.54 E-value=15 Score=20.28 Aligned_cols=28 Identities=25% Similarity=0.182 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHc----CCHHHHHHHHHHHHhh
Q 024858 125 LLGNLAWAYMQK----TNFMAAEVVYQKAQMI 152 (261)
Q Consensus 125 ~~~~Lg~~~~~~----g~~~eA~~~~~~al~~ 152 (261)
+.++||.+|..- .+..+|+.+|+++.+.
T Consensus 3 a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~~ 34 (36)
T smart00671 3 AQYNLGQMYEYGLGVKKDLEKALEYYKKAAEL 34 (36)
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHc
Confidence 567777777542 3788888888887654
No 401
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=65.54 E-value=38 Score=28.67 Aligned_cols=22 Identities=14% Similarity=0.172 Sum_probs=13.3
Q ss_pred cCCHHHHHHHHHHHHhhCCCch
Q 024858 136 KTNFMAAEVVYQKAQMIDPDAN 157 (261)
Q Consensus 136 ~g~~~eA~~~~~~al~~~P~~~ 157 (261)
.++...|+.++++|+.++|...
T Consensus 191 ~~~l~~Al~~L~rA~~l~~k~G 212 (230)
T PHA02537 191 AETLQLALALLQRAFQLNDKCG 212 (230)
T ss_pred cccHHHHHHHHHHHHHhCCCCC
Confidence 3455666666666666666554
No 402
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=64.94 E-value=99 Score=27.26 Aligned_cols=144 Identities=14% Similarity=0.095 Sum_probs=90.3
Q ss_pred HcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc---ch---hhhc-Ccc-----hHH
Q 024858 39 QLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIY---QG---EAFN-GKP-----TKT 106 (261)
Q Consensus 39 ~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~---~~---~~~~-~~~-----~~~ 106 (261)
.++++.+.++.+++.+..+|- +.+...+.+.++.+.| ++++.+..+..+...- |+ -.|+ |.+ ++.
T Consensus 111 ~~~~~~~Ll~~~E~sl~~~pf--WLDgq~~~~qal~~lG-~~~~a~aI~~el~~fL~RlP~L~~L~F~DGtPFad~~T~~ 187 (301)
T TIGR03362 111 AQADWAALLQRVEQSLSLAPF--WLDGQRLSAQALERLG-YAAVAQAIRDELAAFLERLPGLLELKFSDGTPFADDETRA 187 (301)
T ss_pred hCCCHHHHHHHHHHHHHhCch--hhHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHhCcChhhcccCCCCCCCCHHHHH
Confidence 556778999999999888776 6677777888889999 6777777777666521 11 1111 100 000
Q ss_pred -Hhhchhh------hhhhcCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh----hhhHHHHHHHcCCHH
Q 024858 107 -ARSHGKK------FQVSVRQE--TSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK----ACNLGLCLIKRTRYN 173 (261)
Q Consensus 107 -~~~~~~~------~~~~l~p~--~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~----~~~L~~~l~~~g~~~ 173 (261)
...+... ......+. .-.....-+..+...|..++|+..+...+...++.-. ...++.++...|+++
T Consensus 188 WL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~l~~~~gl~~Al~~L~~~~~~~~s~R~rf~~rL~~A~l~~~~g~~~ 267 (301)
T TIGR03362 188 WLAQHATRSNAASVAPVAEVGEESDWEELREEARALAAEGGLEAALQRLQQRLAQAREPRERFHWRLLLARLLEQAGKAE 267 (301)
T ss_pred HHHhcccccccccccccccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCCChHHHHHHHHHHHHHHHHcCCHH
Confidence 0000000 00000000 0111223367788999999999999987664444333 346799999999999
Q ss_pred HHHHHHHHHHhC
Q 024858 174 EARSVLEDVLYG 185 (261)
Q Consensus 174 eA~~~~~~~l~~ 185 (261)
-|..+|+++...
T Consensus 268 lA~~ll~~L~~~ 279 (301)
T TIGR03362 268 LAQQLYAALDQQ 279 (301)
T ss_pred HHHHHHHHHHHH
Confidence 999999988874
No 403
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=64.24 E-value=19 Score=20.34 Aligned_cols=29 Identities=24% Similarity=0.263 Sum_probs=18.8
Q ss_pred HHHHHHH--HHHHHcC-----CHHHHHHHHHHHHhh
Q 024858 124 RLLGNLA--WAYMQKT-----NFMAAEVVYQKAQMI 152 (261)
Q Consensus 124 ~~~~~Lg--~~~~~~g-----~~~eA~~~~~~al~~ 152 (261)
++.++|| .+|.... ++++|+.+|++|.+.
T Consensus 2 ~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~~ 37 (39)
T PF08238_consen 2 EAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAEQ 37 (39)
T ss_dssp HHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHhhhhccCCccccccchHHHHHHHHHc
Confidence 4567777 5444433 468888888887654
No 404
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=63.88 E-value=23 Score=27.46 Aligned_cols=50 Identities=14% Similarity=0.030 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCH
Q 024858 123 SRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRY 172 (261)
Q Consensus 123 ~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~ 172 (261)
.+.....+......|++.-|..+...++..+|+|.. ..-.+.+|..+|.-
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 345667788888999999999999999999999998 66678777766543
No 405
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=63.50 E-value=25 Score=27.27 Aligned_cols=49 Identities=12% Similarity=0.024 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCC
Q 024858 28 SALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGK 78 (261)
Q Consensus 28 ~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~ 78 (261)
+.+...+.-....|++.-|.++...++..+|++ .....+.+++|.+.|.
T Consensus 71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n--~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDN--EEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCc--HHHHHHHHHHHHHHHH
Confidence 344556667778899999999999999898883 3455556666555443
No 406
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=61.85 E-value=49 Score=22.71 Aligned_cols=28 Identities=21% Similarity=0.157 Sum_probs=16.8
Q ss_pred HHHHHHHcCCcHHHHHHHHH-------HHhcCCch
Q 024858 33 MAVVMKQLDRSEEAIEAIKS-------FRGLCSKQ 60 (261)
Q Consensus 33 Lg~~~~~~g~~~eAi~~~~~-------~~~~~P~~ 60 (261)
.|+-+-+.|++.||+..|+. ++...|++
T Consensus 12 ~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~ 46 (75)
T cd02682 12 NAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDS 46 (75)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCCh
Confidence 44445566777777666554 45566764
No 407
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=61.65 E-value=67 Score=24.14 Aligned_cols=74 Identities=18% Similarity=0.231 Sum_probs=46.5
Q ss_pred CCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024858 7 KDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEML 86 (261)
Q Consensus 7 ~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~ 86 (261)
+.+.....+++..+..++.++..+..+..+|...+ ..+.+..++. .++ ..++.. .+.+..+.|.+++++-+|
T Consensus 21 ~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~----~~~--~yd~~~-~~~~c~~~~l~~~~~~l~ 92 (140)
T smart00299 21 NLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLDN----KSN--HYDIEK-VGKLCEKAKLYEEAVELY 92 (140)
T ss_pred CcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHHh----ccc--cCCHHH-HHHHHHHcCcHHHHHHHH
Confidence 56777888888888877777777777777776643 3444555542 111 011222 334557778888888877
Q ss_pred HH
Q 024858 87 KR 88 (261)
Q Consensus 87 ~~ 88 (261)
.+
T Consensus 93 ~k 94 (140)
T smart00299 93 KK 94 (140)
T ss_pred Hh
Confidence 77
No 408
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=61.20 E-value=69 Score=24.15 Aligned_cols=43 Identities=9% Similarity=0.025 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhhCC--Cchh-hhhHHHHHHHcCCHHHHHHHHHHHH
Q 024858 141 AAEVVYQKAQMIDP--DANK-ACNLGLCLIKRTRYNEARSVLEDVL 183 (261)
Q Consensus 141 eA~~~~~~al~~~P--~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l 183 (261)
++..+|.......- ..+. +...|..+...|++++|..+|+..+
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 66666666665432 3344 5567778888888888888877653
No 409
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=61.17 E-value=1.1e+02 Score=26.32 Aligned_cols=25 Identities=24% Similarity=0.117 Sum_probs=19.3
Q ss_pred chh-hhhHHHHHHHcCCHHHHHHHHH
Q 024858 156 ANK-ACNLGLCLIKRTRYNEARSVLE 180 (261)
Q Consensus 156 ~~~-~~~L~~~l~~~g~~~eA~~~~~ 180 (261)
++. +..+|..|.+.|++.+|..++-
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 345 6788999999999999988774
No 410
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.04 E-value=1.7e+02 Score=28.62 Aligned_cols=31 Identities=13% Similarity=0.083 Sum_probs=26.2
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 024858 122 TSRLLGNLAWAYMQKTNFMAAEVVYQKAQMI 152 (261)
Q Consensus 122 ~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~ 152 (261)
.+.-|..||.+-+..|++..|.+++.++-..
T Consensus 665 s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 665 SEVKWRQLGDAALSAGELPLASECFLRARDL 695 (794)
T ss_pred chHHHHHHHHHHhhcccchhHHHHHHhhcch
Confidence 4456889999999999999999999998654
No 411
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=60.27 E-value=36 Score=25.94 Aligned_cols=59 Identities=14% Similarity=0.032 Sum_probs=46.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc--------hh--------hhhHHHHHHHcCCHHHHHHHHHHHHh
Q 024858 126 LGNLAWAYMQKTNFMAAEVVYQKAQMIDPDA--------NK--------ACNLGLCLIKRTRYNEARSVLEDVLY 184 (261)
Q Consensus 126 ~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~--------~~--------~~~L~~~l~~~g~~~eA~~~~~~~l~ 184 (261)
+.++|..-++.+++-.++-.|++|+.+.-+- .+ -.|||.++..+|+.+=.+++++-+-+
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE 78 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASE 78 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHH
Confidence 5678888899999999999999999764221 01 14899999999999999999874433
No 412
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=59.09 E-value=21 Score=24.83 Aligned_cols=28 Identities=14% Similarity=-0.198 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 024858 125 LLGNLAWAYMQKTNFMAAEVVYQKAQMI 152 (261)
Q Consensus 125 ~~~~Lg~~~~~~g~~~eA~~~~~~al~~ 152 (261)
...+.|..+...|+.++|+.+|++++..
T Consensus 10 ~~I~kaL~~dE~g~~e~Al~~Y~~gi~~ 37 (79)
T cd02679 10 EEISKALRADEWGDKEQALAHYRKGLRE 37 (79)
T ss_pred HHHHHHhhhhhcCCHHHHHHHHHHHHHH
Confidence 4567888999999999999999999975
No 413
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=58.56 E-value=1.4e+02 Score=26.82 Aligned_cols=50 Identities=18% Similarity=0.189 Sum_probs=40.6
Q ss_pred cCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 024858 40 LDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRL 92 (261)
Q Consensus 40 ~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l 92 (261)
.+..-+|+.+++.++...|.+. .+...|..+|...|-...|...|.. |.+
T Consensus 196 ~~~l~~Ai~lLE~~l~~s~~n~--~~~LlLvrlY~~LG~~~~A~~~~~~-L~i 245 (365)
T PF09797_consen 196 SEYLLQAIALLEHALKKSPHNY--QLKLLLVRLYSLLGAGSLALEHYES-LDI 245 (365)
T ss_pred HHHHHHHHHHHHHHHHcCCCcH--HHHHHHHHHHHHcCCHHHHHHHHHh-cCh
Confidence 4556788889999999999854 4556689999999999999999976 554
No 414
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.46 E-value=27 Score=25.59 Aligned_cols=48 Identities=10% Similarity=0.117 Sum_probs=34.9
Q ss_pred HHHHHHHHH-cCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCch
Q 024858 13 IVLFWKAIN-AGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ 60 (261)
Q Consensus 13 ~~~~~~al~-~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~ 60 (261)
++.++++-. ..+-.|.++..||.+|...|+.+.|...++.-.++.|..
T Consensus 57 e~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKalFPES 105 (121)
T COG4259 57 EKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKALFPES 105 (121)
T ss_pred HHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccc
Confidence 344444433 234445677789999999999999999998888888874
No 415
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=58.37 E-value=30 Score=26.14 Aligned_cols=27 Identities=19% Similarity=0.220 Sum_probs=19.4
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHhcCCc
Q 024858 33 MAVVMKQLDRSEEAIEAIKSFRGLCSK 59 (261)
Q Consensus 33 Lg~~~~~~g~~~eAi~~~~~~~~~~P~ 59 (261)
+|-.+..+|++++|+.++-.++..+|.
T Consensus 69 lGE~L~~~G~~~~aa~hf~nAl~V~~q 95 (121)
T PF02064_consen 69 LGEQLLAQGDYEEAAEHFYNALKVCPQ 95 (121)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHTSSS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 677777777777777777777777776
No 416
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=58.36 E-value=28 Score=23.00 Aligned_cols=26 Identities=12% Similarity=0.083 Sum_probs=20.6
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 160 CNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 160 ~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
.+-|.-.-+.|++++|+..|.+++..
T Consensus 9 ~~~Av~~D~~g~~~~A~~~Y~~ai~~ 34 (69)
T PF04212_consen 9 IKKAVEADEAGNYEEALELYKEAIEY 34 (69)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 44566677789999999999988774
No 417
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=58.23 E-value=82 Score=24.07 Aligned_cols=81 Identities=16% Similarity=0.027 Sum_probs=54.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 024858 67 NVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVY 146 (261)
Q Consensus 67 ~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~ 146 (261)
.++|+.-.+.+++-.+|-.|++|+.+...-..-+ . .+..+.+.+ .--.-.||+..|..+|+.+=.++++
T Consensus 5 tllAd~a~~~~~~l~si~hYQqAls~se~~~~~~----~--~el~dll~i-----~VisCHNLA~FWR~~gd~~yELkYL 73 (140)
T PF10952_consen 5 TLLADQAFKEADPLRSILHYQQALSLSEEIDESN----E--IELEDLLTI-----SVISCHNLADFWRSQGDSDYELKYL 73 (140)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccc----c--ccHHHHHHH-----HHHHHhhHHHHHHHcCChHHHHHHH
Confidence 4578888899999999999999999853110000 0 000011100 0123479999999999999999988
Q ss_pred H----HHHhhCCCchh
Q 024858 147 Q----KAQMIDPDANK 158 (261)
Q Consensus 147 ~----~al~~~P~~~~ 158 (261)
+ +++.+-|+.+.
T Consensus 74 qlASE~VltLiPQCp~ 89 (140)
T PF10952_consen 74 QLASEKVLTLIPQCPN 89 (140)
T ss_pred HHHHHHHHHhccCCCC
Confidence 6 55678888775
No 418
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=58.01 E-value=21 Score=24.18 Aligned_cols=25 Identities=20% Similarity=0.088 Sum_probs=16.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Q 024858 127 GNLAWAYMQKTNFMAAEVVYQKAQM 151 (261)
Q Consensus 127 ~~Lg~~~~~~g~~~eA~~~~~~al~ 151 (261)
...|.-+...|++++|+.+|.++++
T Consensus 12 i~~Av~~d~~g~~~eAl~~Y~~a~e 36 (77)
T smart00745 12 ISKALKADEAGDYEEALELYKKAIE 36 (77)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4455666677777777777777665
No 419
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=56.28 E-value=61 Score=30.13 Aligned_cols=79 Identities=11% Similarity=0.127 Sum_probs=54.0
Q ss_pred hhcCCHHHHHHHHHHHHHc--------C---CChHHH-------HHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHH
Q 024858 4 LVQKDPEAAIVLFWKAINA--------G---DRVDSA-------LKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESL 65 (261)
Q Consensus 4 ~~~~~~~~A~~~~~~al~~--------~---p~~~~a-------l~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~ 65 (261)
..+|++..|..-|+.++++ . |...++ --.|..+|..+++.+-|.....+.+.++|..+...+
T Consensus 187 yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHL 266 (569)
T PF15015_consen 187 YRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHL 266 (569)
T ss_pred HhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHH
Confidence 3456677777777766652 1 222111 123889999999999999999999999998544444
Q ss_pred HHHHHHHHHHcCCHHHHHH
Q 024858 66 DNVLIDLYKKCGKVEEQIE 84 (261)
Q Consensus 66 ~~~L~~ly~~~g~~~eA~~ 84 (261)
. -+.+.....||.+|..
T Consensus 267 r--qAavfR~LeRy~eAar 283 (569)
T PF15015_consen 267 R--QAAVFRRLERYSEAAR 283 (569)
T ss_pred H--HHHHHHHHHHHHHHHH
Confidence 3 3556677788888843
No 420
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=56.16 E-value=1.5e+02 Score=26.55 Aligned_cols=106 Identities=16% Similarity=0.092 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHh-cCCc----hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcC
Q 024858 27 DSALKDMAVVMKQLDRSEEAIEAIKSFRG-LCSK----QSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNG 101 (261)
Q Consensus 27 ~~al~~Lg~~~~~~g~~~eAi~~~~~~~~-~~P~----~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~ 101 (261)
...-..|+.+|-.-+++..|.+.+...-. .+|. +....+..-++.+|.+.|+..+|..+..++--+..
T Consensus 103 ~~irl~LAsiYE~Eq~~~~aaq~L~~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a------- 175 (399)
T KOG1497|consen 103 ASIRLHLASIYEKEQNWRDAAQVLVGIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQA------- 175 (399)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhh-------
Confidence 34455689999999999999887754321 1232 12223445688999999999999999888654311
Q ss_pred cchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 024858 102 KPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMI 152 (261)
Q Consensus 102 ~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~ 152 (261)
...+..+++ ..-..-+.++...|+|-||...|-+....
T Consensus 176 ------~~~Ne~Lqi-------e~kvc~ARvlD~krkFlEAAqrYyels~~ 213 (399)
T KOG1497|consen 176 ------ESSNEQLQI-------EYKVCYARVLDYKRKFLEAAQRYYELSQR 213 (399)
T ss_pred ------cccCHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 001111111 12345678888899999999888876543
No 421
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.86 E-value=36 Score=24.92 Aligned_cols=38 Identities=11% Similarity=0.112 Sum_probs=33.3
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchhh
Q 024858 122 TSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA 159 (261)
Q Consensus 122 ~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~ 159 (261)
.|-.+..||.+|...|+.+.|.+-|+.=-.+.|.+..+
T Consensus 71 pPG~HAhLGlLys~~G~~e~a~~eFetEKalFPES~~f 108 (121)
T COG4259 71 PPGYHAHLGLLYSNSGKDEQAVREFETEKALFPESGVF 108 (121)
T ss_pred CCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccchhH
Confidence 35578899999999999999999999988899988763
No 422
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=55.61 E-value=1.9e+02 Score=27.39 Aligned_cols=76 Identities=7% Similarity=-0.030 Sum_probs=56.5
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 024858 15 LFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRL 92 (261)
Q Consensus 15 ~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l 92 (261)
-++.-|+.+|++...|+.|-.-+-.+|.+++-.+.|+++..-.|--.+.....+-|.+ ..++|..-+.++-+.|..
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~EL--A~~df~svE~lf~rCL~k 105 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGEL--ARKDFRSVESLFGRCLKK 105 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchh--hhhhHHHHHHHHHHHHhh
Confidence 4666788999999999999999999999999999999999888853223223333333 446777777777776664
No 423
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=55.58 E-value=1.2e+02 Score=24.98 Aligned_cols=44 Identities=20% Similarity=0.272 Sum_probs=29.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCH
Q 024858 128 NLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRY 172 (261)
Q Consensus 128 ~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~ 172 (261)
..-.+++..|.+++|++.+++... +|++.. ...|..+-.+...+
T Consensus 116 ~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~Kd~~ 160 (200)
T cd00280 116 QAVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREKDPA 160 (200)
T ss_pred HHHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHccccc
Confidence 345577788888888888888777 777766 55565554444333
No 424
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=52.62 E-value=1.3e+02 Score=24.80 Aligned_cols=47 Identities=13% Similarity=0.005 Sum_probs=22.4
Q ss_pred cCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHc----CCHHHHHHHHHHHHh
Q 024858 136 KTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKR----TRYNEARSVLEDVLY 184 (261)
Q Consensus 136 ~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~----g~~~eA~~~~~~~l~ 184 (261)
..+.+.|.++--+|.+++ ++. -.|+...|..- .+-++|..+-.++.+
T Consensus 181 ~kDMdka~qfa~kACel~--~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e 232 (248)
T KOG4014|consen 181 SKDMDKALQFAIKACELD--IPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKE 232 (248)
T ss_pred hHhHHHHHHHHHHHHhcC--ChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHH
Confidence 345566666666666653 333 22333333211 245555555555544
No 425
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=51.75 E-value=1.7e+02 Score=25.89 Aligned_cols=57 Identities=21% Similarity=0.164 Sum_probs=38.9
Q ss_pred HHHHHHHHcCCcHHHHHHHHHHHhcCCc------hhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 024858 32 DMAVVMKQLDRSEEAIEAIKSFRGLCSK------QSQESLDNVLIDLYKKCGKVEEQIEMLKR 88 (261)
Q Consensus 32 ~Lg~~~~~~g~~~eAi~~~~~~~~~~P~------~~~~~~~~~L~~ly~~~g~~~eA~~~~~~ 88 (261)
.++.-....+++++||..|++.+..+-. +-.+.....|+.+|...|++..--+....
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~ 70 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITS 70 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHh
Confidence 4566667788999999999988876331 12233345588999999998765544433
No 426
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=51.50 E-value=31 Score=23.23 Aligned_cols=26 Identities=19% Similarity=0.047 Sum_probs=17.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh
Q 024858 127 GNLAWAYMQKTNFMAAEVVYQKAQMI 152 (261)
Q Consensus 127 ~~Lg~~~~~~g~~~eA~~~~~~al~~ 152 (261)
..-|.-....|++++|+.+|..+++.
T Consensus 10 ~~~Av~~D~~g~~~~Al~~Y~~a~e~ 35 (75)
T cd02656 10 IKQAVKEDEDGNYEEALELYKEALDY 35 (75)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44556666777888887777777653
No 427
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=51.38 E-value=2.3e+02 Score=27.23 Aligned_cols=168 Identities=15% Similarity=0.098 Sum_probs=104.5
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 024858 13 IVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRL 92 (261)
Q Consensus 13 ~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l 92 (261)
+-++.+.+..+.+ ..++..++.+|.+. ..++=-...++.++.+=++ ...+..|++.|.+ ++-..++.+|.+++..
T Consensus 86 eh~c~~~l~~~e~-kmal~el~q~y~en-~n~~l~~lWer~ve~dfnD--vv~~ReLa~~yEk-ik~sk~a~~f~Ka~yr 160 (711)
T COG1747 86 EHLCTRVLEYGES-KMALLELLQCYKEN-GNEQLYSLWERLVEYDFND--VVIGRELADKYEK-IKKSKAAEFFGKALYR 160 (711)
T ss_pred HHHHHHHHHhcch-HHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchh--HHHHHHHHHHHHH-hchhhHHHHHHHHHHH
Confidence 3455666665443 45677889999887 6677778888888887773 4567779888766 9999999999999876
Q ss_pred hcchhhhcC---cchHHHhhch---hhh-------hhhcCCCcHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhhCCCchh
Q 024858 93 IYQGEAFNG---KPTKTARSHG---KKF-------QVSVRQETSRLLG-NLAWAYMQKTNFMAAEVVYQKAQMIDPDANK 158 (261)
Q Consensus 93 ~~~~~~~~~---~~~~~~~~~~---~~~-------~~~l~p~~~~~~~-~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~ 158 (261)
.-|..-..+ .=.++...-+ +.+ +-.+......++. .+-.-|....++.||+....-.++.|..+..
T Consensus 161 fI~~~q~~~i~evWeKL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ 240 (711)
T COG1747 161 FIPRRQNAAIKEVWEKLPELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVW 240 (711)
T ss_pred hcchhhhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhh
Confidence 422110000 0000000000 000 0011111222222 2334567789999999999999999988876
Q ss_pred -hhhHHHHHHH--------------------cCCHHHHHHHHHHHHhC
Q 024858 159 -ACNLGLCLIK--------------------RTRYNEARSVLEDVLYG 185 (261)
Q Consensus 159 -~~~L~~~l~~--------------------~g~~~eA~~~~~~~l~~ 185 (261)
.-++-..+.. -.++-+++.-|++.+..
T Consensus 241 ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f 288 (711)
T COG1747 241 ARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMHF 288 (711)
T ss_pred HHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHhee
Confidence 5555555554 34677777777777664
No 428
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=51.29 E-value=34 Score=23.20 Aligned_cols=26 Identities=27% Similarity=0.127 Sum_probs=17.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 024858 126 LGNLAWAYMQKTNFMAAEVVYQKAQM 151 (261)
Q Consensus 126 ~~~Lg~~~~~~g~~~eA~~~~~~al~ 151 (261)
+..-|.-....|++++|+.+|.++++
T Consensus 9 l~~~Av~~D~~g~y~eA~~~Y~~aie 34 (75)
T cd02678 9 LVKKAIEEDNAGNYEEALRLYQHALE 34 (75)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34455566677777777777777665
No 429
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=51.19 E-value=40 Score=24.61 Aligned_cols=30 Identities=7% Similarity=-0.027 Sum_probs=23.1
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHhcCCc
Q 024858 30 LKDMAVVMKQLDRSEEAIEAIKSFRGLCSK 59 (261)
Q Consensus 30 l~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~ 59 (261)
...-|.+-...|++..|.+...++.+..+.
T Consensus 62 al~~Gl~al~~G~~~~A~k~~~~a~~~~~~ 91 (108)
T PF07219_consen 62 ALSRGLIALAEGDWQRAEKLLAKAAKLSDN 91 (108)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 344577778889999999999988766544
No 430
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=50.46 E-value=50 Score=25.34 Aligned_cols=44 Identities=23% Similarity=0.223 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHH
Q 024858 123 SRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCL 166 (261)
Q Consensus 123 ~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l 166 (261)
.+.+.-+-..++..-+.+.|..+|.+.++..|++.. +..+-..+
T Consensus 76 ~EaLRDfq~~~iaKle~e~Ae~vY~el~~~~P~HLpaHla~i~~l 120 (139)
T PF12583_consen 76 SEALRDFQCSWIAKLEPENAEQVYEELLEAHPDHLPAHLAMIQNL 120 (139)
T ss_dssp HHHHHHHHHHHHTTS-HHHHHHHHHHHHHH-TT-THHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHHCcchHHHHHHHHHcc
Confidence 356666666777788889999999999999999987 66555544
No 431
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=49.08 E-value=42 Score=19.02 Aligned_cols=26 Identities=15% Similarity=0.418 Sum_probs=18.0
Q ss_pred CHHHHHHHHHHHHhhCCCchhhhhHH
Q 024858 138 NFMAAEVVYQKAQMIDPDANKACNLG 163 (261)
Q Consensus 138 ~~~eA~~~~~~al~~~P~~~~~~~L~ 163 (261)
.++.|...|++.+...|+-..|...|
T Consensus 2 E~dRAR~IyeR~v~~hp~~k~WikyA 27 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPEVKNWIKYA 27 (32)
T ss_pred hHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 46777888888888877755565444
No 432
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=49.04 E-value=26 Score=31.17 Aligned_cols=77 Identities=9% Similarity=-0.057 Sum_probs=58.2
Q ss_pred HHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 024858 17 WKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIY 94 (261)
Q Consensus 17 ~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~ 94 (261)
.++-..-|+++..|..-+.-....|-+.+--..|.+++..+|.+...++. ....-|...++++.+-..+.++|++++
T Consensus 97 ~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~-~c~~e~~~~ani~s~Ra~f~~glR~N~ 173 (435)
T COG5191 97 YRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIY-CCAFELFEIANIESSRAMFLKGLRMNS 173 (435)
T ss_pred ehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeee-eccchhhhhccHHHHHHHHHhhhccCC
Confidence 34455567788888877777777788888888999999999986433222 244456778999999999999999865
No 433
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=48.17 E-value=6 Score=37.83 Aligned_cols=81 Identities=20% Similarity=0.152 Sum_probs=0.0
Q ss_pred CCHHH-HHHHHHHHHHcCC-ChHHHHHHHHHHHHHcCCcHHHHHHHHHHH--hcCCchhHHHHHHHHHHHHHHcCCHHHH
Q 024858 7 KDPEA-AIVLFWKAINAGD-RVDSALKDMAVVMKQLDRSEEAIEAIKSFR--GLCSKQSQESLDNVLIDLYKKCGKVEEQ 82 (261)
Q Consensus 7 ~~~~~-A~~~~~~al~~~p-~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~--~~~P~~~~~~~~~~L~~ly~~~g~~~eA 82 (261)
|+... |..++.+|-...+ .-...+..-+..+.+.|++..|..++.++- .+.|.. ...+..+.+.+...+|++++|
T Consensus 2 ~~~~~aA~~yL~~A~~a~~~~~~~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q-~~~~~Ll~A~lal~~~~~~~A 80 (536)
T PF04348_consen 2 GDPRQAAEQYLQQAQQASGEQRAQLLLLAARALLQEGDWAQAQALLNQLDPQQLSPSQ-QARYQLLRARLALAQGDPEQA 80 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CchhHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHhCCCHHHHHHHHHhcccccCChHH-HHHHHHHHHHHHHhcCCHHHH
Confidence 34444 4445555554433 334445556888999999999999998765 355543 233455678888999999999
Q ss_pred HHHHHH
Q 024858 83 IEMLKR 88 (261)
Q Consensus 83 ~~~~~~ 88 (261)
+..+..
T Consensus 81 l~~L~~ 86 (536)
T PF04348_consen 81 LSLLNA 86 (536)
T ss_dssp ------
T ss_pred HHHhcc
Confidence 998875
No 434
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=48.11 E-value=2.9e+02 Score=27.97 Aligned_cols=133 Identities=14% Similarity=0.120 Sum_probs=77.4
Q ss_pred hcCCHHHHHHHHHHHHH-cCCChHHHHHHHHHHH---------HHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Q 024858 5 VQKDPEAAIVLFWKAIN-AGDRVDSALKDMAVVM---------KQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYK 74 (261)
Q Consensus 5 ~~~~~~~A~~~~~~al~-~~p~~~~al~~Lg~~~---------~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~ 74 (261)
+.||-++|+...-..++ .+|-.++.+..-|.+| ...+..+.|+..|+++....|. ...+.+++.++.
T Consensus 255 r~GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~---~~sGIN~atLL~ 331 (1226)
T KOG4279|consen 255 RPGDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPL---EYSGINLATLLR 331 (1226)
T ss_pred CCccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCch---hhccccHHHHHH
Confidence 35777888877777775 4555555555556665 3446778889999999999997 224556788888
Q ss_pred HcCCH-HHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHH---HHcCCHHHHHHHHHHHH
Q 024858 75 KCGKV-EEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAY---MQKTNFMAAEVVYQKAQ 150 (261)
Q Consensus 75 ~~g~~-~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~---~~~g~~~eA~~~~~~al 150 (261)
..|+. +...++-.-.++++. +.|+. |. + +.-.-+...|..+ .-.++|.+|+..-+...
T Consensus 332 aaG~~Fens~Elq~IgmkLn~----LlgrK-------G~-l------eklq~YWdV~~y~~asVLAnd~~kaiqAae~mf 393 (1226)
T KOG4279|consen 332 AAGEHFENSLELQQIGMKLNS----LLGRK-------GA-L------EKLQEYWDVATYFEASVLANDYQKAIQAAEMMF 393 (1226)
T ss_pred HhhhhccchHHHHHHHHHHHH----Hhhcc-------ch-H------HHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHh
Confidence 77764 444444444444421 00100 00 0 0001222233222 23467888888888888
Q ss_pred hhCCCchh
Q 024858 151 MIDPDANK 158 (261)
Q Consensus 151 ~~~P~~~~ 158 (261)
++.|-...
T Consensus 394 KLk~P~WY 401 (1226)
T KOG4279|consen 394 KLKPPVWY 401 (1226)
T ss_pred ccCCceeh
Confidence 88775543
No 435
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=46.17 E-value=60 Score=31.90 Aligned_cols=27 Identities=19% Similarity=0.190 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 024858 123 SRLLGNLAWAYMQKTNFMAAEVVYQKA 149 (261)
Q Consensus 123 ~~~~~~Lg~~~~~~g~~~eA~~~~~~a 149 (261)
++++...|..+....+++||-+.|.+|
T Consensus 804 ~dVy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 804 DDVYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred ccccchHHHHhhhhhhHHHHHHHHHHh
Confidence 356777777777777888877777665
No 436
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=45.56 E-value=30 Score=23.80 Aligned_cols=20 Identities=15% Similarity=0.348 Sum_probs=16.7
Q ss_pred HHHcCCHHHHHHHHHHHHHh
Q 024858 73 YKKCGKVEEQIEMLKRKLRL 92 (261)
Q Consensus 73 y~~~g~~~eA~~~~~~al~l 92 (261)
+.+.|++++|+.+|.+++..
T Consensus 16 ~D~~g~y~eAl~~Y~~aie~ 35 (77)
T cd02683 16 LDQEGRFQEALVCYQEGIDL 35 (77)
T ss_pred HHHhccHHHHHHHHHHHHHH
Confidence 35679999999999999886
No 437
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=45.07 E-value=1.1e+02 Score=28.29 Aligned_cols=98 Identities=18% Similarity=0.206 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 024858 65 LDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEV 144 (261)
Q Consensus 65 ~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~ 144 (261)
...-+++-|..+|+++.|+..|-++=... .+.+.. ...+.|+-.+-.-.|+|..-..
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYC--------------Ts~khv---------Inm~ln~i~VSI~~~nw~hv~s 208 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYC--------------TSAKHV---------INMCLNLILVSIYMGNWGHVLS 208 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhh--------------cchHHH---------HHHHHHHHHHHHhhcchhhhhh
Confidence 44568899999999999999999943221 111111 1345555555566667666665
Q ss_pred HHHHHHhhC-------CCch-h-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 145 VYQKAQMID-------PDAN-K-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 145 ~~~~al~~~-------P~~~-~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
+-.+|.+.- +.-+ . .+.-|.+...+++|+.|..++-.+-..
T Consensus 209 y~~~A~st~~~~~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~~~ 258 (466)
T KOG0686|consen 209 YISKAESTPDANENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAEFD 258 (466)
T ss_pred HHHHHHhCchhhhhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 555554431 1111 1 234566667777999998888665543
No 438
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=45.05 E-value=96 Score=27.85 Aligned_cols=82 Identities=17% Similarity=0.169 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHH-HHHH
Q 024858 9 PEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQI-EMLK 87 (261)
Q Consensus 9 ~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~-~~~~ 87 (261)
+-+|+.+++.++..+|.+......|..+|...|-...|...|...--..= + ..+++.++..-+...|.+..+. ..+.
T Consensus 199 l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L~iK~I-Q-~DTL~h~~~~r~~~~~~~~~~~~~~~~ 276 (365)
T PF09797_consen 199 LLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESLDIKNI-Q-LDTLGHLILDRLSTLGPFKSAPENLLE 276 (365)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhcChHHH-H-HHHhHHHHHHHHhccCcccccchHHHH
Confidence 44688889999999999999999999999999999999999965311100 1 1223333333345566666666 6666
Q ss_pred HHHHh
Q 024858 88 RKLRL 92 (261)
Q Consensus 88 ~al~l 92 (261)
.+++.
T Consensus 277 ~~~~f 281 (365)
T PF09797_consen 277 NALKF 281 (365)
T ss_pred HHHHH
Confidence 66654
No 439
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=44.49 E-value=55 Score=21.33 Aligned_cols=26 Identities=15% Similarity=0.286 Sum_probs=16.1
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHh
Q 024858 159 ACNLGLCLIKRTRYNEARSVLEDVLY 184 (261)
Q Consensus 159 ~~~L~~~l~~~g~~~eA~~~~~~~l~ 184 (261)
+...-.-|...|++++|.++.+++..
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34455566677777777777766655
No 440
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=44.42 E-value=49 Score=22.73 Aligned_cols=17 Identities=29% Similarity=0.126 Sum_probs=8.6
Q ss_pred HHcCCcHHHHHHHHHHH
Q 024858 38 KQLDRSEEAIEAIKSFR 54 (261)
Q Consensus 38 ~~~g~~~eAi~~~~~~~ 54 (261)
-+.|++++|+..|..++
T Consensus 17 D~~g~y~eA~~~Y~~ai 33 (76)
T cd02681 17 DQEGRYSEAVFYYKEAA 33 (76)
T ss_pred HHccCHHHHHHHHHHHH
Confidence 34455555555554443
No 441
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.99 E-value=98 Score=29.50 Aligned_cols=59 Identities=15% Similarity=-0.100 Sum_probs=49.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh------CCCch-h-hhhHHHHHHHcCC-HHHHHHHHHHHHhC
Q 024858 127 GNLAWAYMQKTNFMAAEVVYQKAQMI------DPDAN-K-ACNLGLCLIKRTR-YNEARSVLEDVLYG 185 (261)
Q Consensus 127 ~~Lg~~~~~~g~~~eA~~~~~~al~~------~P~~~-~-~~~L~~~l~~~g~-~~eA~~~~~~~l~~ 185 (261)
.-+|.++..+|+...|..+|..+++. +|--. . .+.||..+..+|. ..++..++.+|...
T Consensus 453 lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~ 520 (546)
T KOG3783|consen 453 LLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREY 520 (546)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhh
Confidence 45799999999999999999999943 22222 2 5789999999999 99999999999885
No 442
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=43.68 E-value=1.7e+02 Score=27.15 Aligned_cols=44 Identities=16% Similarity=0.096 Sum_probs=32.0
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCcchhhHHHHHHHHHHHHhcCCC
Q 024858 165 CLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELLLELESKQPP 212 (261)
Q Consensus 165 ~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~a~~~l~~l~~~~~~ 212 (261)
...+.++|.-|..+.+++|..+ + .....++|..++..+...+.+
T Consensus 309 ~~~K~KNf~tAa~FArRLLel~---p-~~~~a~qArKil~~~e~~~tD 352 (422)
T PF06957_consen 309 QAFKLKNFITAASFARRLLELN---P-SPEVAEQARKILQACERNPTD 352 (422)
T ss_dssp HCCCTTBHHHHHHHHHHHHCT------SCHHHHHHHHHHHHHCCS--B
T ss_pred HHHHhccHHHHHHHHHHHHHcC---C-CHHHHHHHHHHHHHHhcCCCC
Confidence 3457799999999999999973 2 234567899999988764443
No 443
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=43.64 E-value=2.5e+02 Score=25.49 Aligned_cols=61 Identities=13% Similarity=0.007 Sum_probs=41.4
Q ss_pred HHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHh
Q 024858 32 DMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLY--KKCGKVEEQIEMLKRKLRL 92 (261)
Q Consensus 32 ~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly--~~~g~~~eA~~~~~~al~l 92 (261)
..+.-+...++|..|.+.++.+...-|..........+...| =...++++|.+.+++.+..
T Consensus 136 ~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 136 RRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 356677899999999999998887534321111222233333 4588899999999997764
No 444
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=42.78 E-value=86 Score=30.14 Aligned_cols=63 Identities=19% Similarity=0.079 Sum_probs=40.8
Q ss_pred cHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhhC----CC-chh-hhhHHHHHHHcCCHHHHHHHHHHHHh
Q 024858 122 TSRLLGNLAWAYMQ--KTNFMAAEVVYQKAQMID----PD-ANK-ACNLGLCLIKRTRYNEARSVLEDVLY 184 (261)
Q Consensus 122 ~~~~~~~Lg~~~~~--~g~~~eA~~~~~~al~~~----P~-~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~ 184 (261)
.|-++.|||.+-.- ...-..++..|.+|+... -+ +.. +..+|..|.+.+++.+|+..+-++-.
T Consensus 276 YPmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR~~~~~eA~~~Wa~aa~ 346 (618)
T PF05053_consen 276 YPMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYNNHHVYPYTYLGGYYYRHKRYREALRSWAEAAD 346 (618)
T ss_dssp -HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred CchhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhcCCccccceehhhHHHHHHHHHHHHHHHHHHHH
Confidence 35566777776633 344566788888888642 22 223 56799999999999999999876544
No 445
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=42.53 E-value=3.3e+02 Score=26.40 Aligned_cols=123 Identities=12% Similarity=0.006 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHH
Q 024858 27 DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKT 106 (261)
Q Consensus 27 ~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~ 106 (261)
-..|..-...-...|++....-.+++++--+... ...+.--+..+...|+.+-|-..+..+.++..
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y--~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~------------ 362 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLIPCALY--DEFWIKYARWMESSGDVSLANNVLARACKIHV------------ 362 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhh--HHHHHHHHHHHHHcCchhHHHHHHHhhhhhcC------------
Confidence 3344444444567799999999999887655442 11222244555677999999999999988742
Q ss_pred HhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHH
Q 024858 107 ARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEAR 176 (261)
Q Consensus 107 ~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~ 176 (261)
|..+.++..-+..-..+|+++.|...|++..+--|.... -..-......+|..+.+-
T Consensus 363 -------------k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 363 -------------KKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred -------------CCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhh
Confidence 223445555566666677777777777777766666655 333444555566666665
No 446
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.04 E-value=3.2e+02 Score=26.19 Aligned_cols=126 Identities=17% Similarity=0.196 Sum_probs=78.8
Q ss_pred cCCHHHHHHHHHHHHHcCCChHHHHHHHHH-HH-------HHcC--CcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Q 024858 6 QKDPEAAIVLFWKAINAGDRVDSALKDMAV-VM-------KQLD--RSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKK 75 (261)
Q Consensus 6 ~~~~~~A~~~~~~al~~~p~~~~al~~Lg~-~~-------~~~g--~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~ 75 (261)
.|+-+++....+.+-..- +.-.++-.|+. .+ ...+ +.+...+.+....+..|+++ .+..+-+.++.-
T Consensus 203 ~g~r~egl~~Lw~~a~~~-s~~~~i~~l~L~~y~~~~~~~~~~p~~d~~~~~~~Ll~~~~~~p~ga--~wll~~ar~l~~ 279 (546)
T KOG3783|consen 203 SGDRDEGLRLLWEAAKQR-NFRGAIALLALLCYYQFISFVLGTPNPDGEECEKALKKYRKRYPKGA--LWLLMEARILSI 279 (546)
T ss_pred cccHHHHHHHHHHHHccC-cchHHHHHHHHHHHHHHHHHHcCCCCccHHHHHHHhHHHHHhCCCCc--cHHHHHHHHHHH
Confidence 355566666666655433 33233332221 11 1222 22555667777788888853 355557788888
Q ss_pred cCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 024858 76 CGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPD 155 (261)
Q Consensus 76 ~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~ 155 (261)
.|+.+.|+......+... -+.+ ..-.++.+|+++.-+.+|..|...+.......--
T Consensus 280 ~g~~eaa~~~~~~~v~~~-----------------~kQ~-------~~l~~fE~aw~~v~~~~~~~aad~~~~L~desdW 335 (546)
T KOG3783|consen 280 KGNSEAAIDMESLSIPIR-----------------MKQV-------KSLMVFERAWLSVGQHQYSRAADSFDLLRDESDW 335 (546)
T ss_pred cccHHHHHHHHHhcccHH-----------------HHHH-------HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhh
Confidence 999888888887776621 0111 1225678999999999999999999998877544
Q ss_pred chh
Q 024858 156 ANK 158 (261)
Q Consensus 156 ~~~ 158 (261)
+..
T Consensus 336 S~a 338 (546)
T KOG3783|consen 336 SHA 338 (546)
T ss_pred hHH
Confidence 443
No 447
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=42.04 E-value=2e+02 Score=28.76 Aligned_cols=153 Identities=11% Similarity=0.112 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCc----
Q 024858 27 DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGK---- 102 (261)
Q Consensus 27 ~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~---- 102 (261)
..++..||.++...|+- ..+++...++...++ ....+..||--+..+|--. ++.|+++-+.-+.+.+..|-
T Consensus 397 GGalyAlGLIhA~hG~~--~~~yL~~~Lk~~~~e-~v~hG~cLGlGLa~mGSa~--~eiYe~lKevLy~D~AvsGEAAgi 471 (929)
T KOG2062|consen 397 GGALYALGLIHANHGRG--ITDYLLQQLKTAENE-VVRHGACLGLGLAGMGSAN--EEIYEKLKEVLYNDSAVSGEAAGI 471 (929)
T ss_pred cchhhhhhccccCcCcc--HHHHHHHHHHhccch-hhhhhhhhhccchhccccc--HHHHHHHHHHHhccchhhhhHHHH
Confidence 45677777777666664 667776666544332 2233444554445555443 34455544433322222110
Q ss_pred -------chHHHhhchhhhhhhcCCCcHHHHHH--HHHHHHHcCCHHHHHHHHHHHHhhC-CCch-h-hhhHHHHHHHcC
Q 024858 103 -------PTKTARSHGKKFQVSVRQETSRLLGN--LAWAYMQKTNFMAAEVVYQKAQMID-PDAN-K-ACNLGLCLIKRT 170 (261)
Q Consensus 103 -------~~~~~~~~~~~~~~~l~p~~~~~~~~--Lg~~~~~~g~~~eA~~~~~~al~~~-P~~~-~-~~~L~~~l~~~g 170 (261)
.........+.+.+..+-.+..+... +|.++..-|+-++|-.+.++.+.-. |--- . .+.++.+|.-.|
T Consensus 472 ~MGl~mlGt~~~eaiedm~~Ya~ETQHeki~RGl~vGiaL~~ygrqe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTg 551 (929)
T KOG2062|consen 472 AMGLLMLGTANQEAIEDMLTYAQETQHEKIIRGLAVGIALVVYGRQEDADPLIKELLRDKDPILRYGGMYTLALAYVGTG 551 (929)
T ss_pred hhhhHhhCcCcHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhhhhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccC
Confidence 00000000011112222223334433 4556666666667766666665432 1111 1 345666666666
Q ss_pred CHHHHHHHHHHHHh
Q 024858 171 RYNEARSVLEDVLY 184 (261)
Q Consensus 171 ~~~eA~~~~~~~l~ 184 (261)
+-.--.+++--++.
T Consensus 552 nnkair~lLh~aVs 565 (929)
T KOG2062|consen 552 NNKAIRRLLHVAVS 565 (929)
T ss_pred chhhHHHhhccccc
Confidence 65544444333333
No 448
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=41.81 E-value=52 Score=24.86 Aligned_cols=32 Identities=13% Similarity=0.183 Sum_probs=25.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh
Q 024858 127 GNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK 158 (261)
Q Consensus 127 ~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~ 158 (261)
..+|..+..+|++++|..+|-+|+..-|+-..
T Consensus 67 V~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~ 98 (121)
T PF02064_consen 67 VQLGEQLLAQGDYEEAAEHFYNALKVCPQPAE 98 (121)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTSSSHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHH
Confidence 46888888899999999999999988877654
No 449
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=41.18 E-value=1.2e+02 Score=22.88 Aligned_cols=46 Identities=11% Similarity=0.085 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 024858 45 EAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKL 90 (261)
Q Consensus 45 eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al 90 (261)
++.+.|.-+...+=..-....+...|..+...|++++|.++|++++
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 8888887766533221123345567788899999999999999865
No 450
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=40.73 E-value=1.2e+02 Score=27.28 Aligned_cols=84 Identities=17% Similarity=0.129 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 024858 8 DPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLK 87 (261)
Q Consensus 8 ~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~ 87 (261)
||..-..+|.......|.-. .-.|-++.+....=..-+....+......--+....++..-++++.+.|+.+||-..|+
T Consensus 311 DW~~I~aLYdaL~~~apSPv-V~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~ayd 389 (415)
T COG4941 311 DWPAIDALYDALEQAAPSPV-VTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYD 389 (415)
T ss_pred ChHHHHHHHHHHHHhCCCCe-EeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHH
Q ss_pred HHHHh
Q 024858 88 RKLRL 92 (261)
Q Consensus 88 ~al~l 92 (261)
+++.+
T Consensus 390 rAi~L 394 (415)
T COG4941 390 RAIAL 394 (415)
T ss_pred HHHHh
No 451
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=40.58 E-value=59 Score=22.19 Aligned_cols=24 Identities=21% Similarity=0.183 Sum_probs=12.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Q 024858 128 NLAWAYMQKTNFMAAEVVYQKAQM 151 (261)
Q Consensus 128 ~Lg~~~~~~g~~~eA~~~~~~al~ 151 (261)
..|.-....|+|++|..+|..++.
T Consensus 11 ~~Ave~d~~~~y~eA~~~Y~~~i~ 34 (75)
T cd02677 11 RLALEKEEEGDYEAAFEFYRAGVD 34 (75)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHH
Confidence 334444455566666665555554
No 452
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=40.25 E-value=1.6e+02 Score=26.01 Aligned_cols=61 Identities=15% Similarity=0.125 Sum_probs=48.3
Q ss_pred HHHHHHHHcCCcHHHHHHHHHHHhc--CCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 024858 32 DMAVVMKQLDRSEEAIEAIKSFRGL--CSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLI 93 (261)
Q Consensus 32 ~Lg~~~~~~g~~~eAi~~~~~~~~~--~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~ 93 (261)
.-+..+...|..++|+..++..+.. .|.+ ...+...++.++.+.|+++-|...|+++.+..
T Consensus 218 ~eA~~l~~~~gl~~Al~~L~~~~~~~~s~R~-rf~~rL~~A~l~~~~g~~~lA~~ll~~L~~~~ 280 (301)
T TIGR03362 218 EEARALAAEGGLEAALQRLQQRLAQAREPRE-RFHWRLLLARLLEQAGKAELAQQLYAALDQQI 280 (301)
T ss_pred HHHHHHHHcCCHHHHHHHHHhhcccCCChHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 3467778899999999999876553 3433 34566778999999999999999999987753
No 453
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=39.94 E-value=1.8e+02 Score=27.12 Aligned_cols=63 Identities=17% Similarity=0.208 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHH--HhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 024858 27 DSALKDMAVVMKQLDRSEEAIEAIKSF--RGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRL 92 (261)
Q Consensus 27 ~~al~~Lg~~~~~~g~~~eAi~~~~~~--~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l 92 (261)
+...+.+-..+...|..++++..++.= ..++|++ . .+|+|-+.+.+.|+|..|.++.-.....
T Consensus 103 ~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~--~-s~n~Lmd~fl~~~~~~~A~~V~~~~~lQ 167 (429)
T PF10037_consen 103 PSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDN--F-SFNLLMDHFLKKGNYKSAAKVATEMMLQ 167 (429)
T ss_pred CccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCCh--h-hHHHHHHHHhhcccHHHHHHHHHHHHHh
Confidence 445566778889999999999999754 4567883 3 4567888999999999999988776554
No 454
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=39.72 E-value=1.8e+02 Score=22.68 Aligned_cols=117 Identities=15% Similarity=0.152 Sum_probs=60.7
Q ss_pred hhcCCHHHHHHHHHHHHHcCCChHHHHHH-----------HHHHHHHc---------CCcHHHHHHHHHHHhcCCchhHH
Q 024858 4 LVQKDPEAAIVLFWKAINAGDRVDSALKD-----------MAVVMKQL---------DRSEEAIEAIKSFRGLCSKQSQE 63 (261)
Q Consensus 4 ~~~~~~~~A~~~~~~al~~~p~~~~al~~-----------Lg~~~~~~---------g~~~eAi~~~~~~~~~~P~~~~~ 63 (261)
++.|+.++..++..+.++..|....-|+- +-.++-.. |....-+..+ ...+-. .+
T Consensus 13 ildG~V~qGveii~k~v~Ssni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~---~~~n~~--se 87 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSSNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGNLKRVIECY---AKRNKL--SE 87 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S-THHHHHHH---HHTT-----H
T ss_pred HHhchHHHHHHHHHHHcCcCCccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcchHHHHHHH---HHhcch--HH
Confidence 57889999999999988876654433432 11222111 1222222222 111111 11
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 024858 64 SLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAE 143 (261)
Q Consensus 64 ~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~ 143 (261)
.... -.+.+.++|+-+.=.+.++...+-. ..+|+.+.-+|.+|...|+..+|-
T Consensus 88 ~vD~-ALd~lv~~~kkDqLdki~~~l~kn~--------------------------~~~p~~L~kia~Ay~klg~~r~~~ 140 (161)
T PF09205_consen 88 YVDL-ALDILVKQGKKDQLDKIYNELKKNE--------------------------EINPEFLVKIANAYKKLGNTREAN 140 (161)
T ss_dssp HHHH-HHHHHHHTT-HHHHHHHHHHH-------------------------------S-HHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHH-HHHHHHHhccHHHHHHHHHHHhhcc--------------------------CCCHHHHHHHHHHHHHhcchhhHH
Confidence 1122 2234456666665555555544310 125778899999999999999999
Q ss_pred HHHHHHHhh
Q 024858 144 VVYQKAQMI 152 (261)
Q Consensus 144 ~~~~~al~~ 152 (261)
..+++|.+-
T Consensus 141 ell~~ACek 149 (161)
T PF09205_consen 141 ELLKEACEK 149 (161)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999998764
No 455
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=39.69 E-value=1.8e+02 Score=22.74 Aligned_cols=27 Identities=4% Similarity=-0.007 Sum_probs=23.1
Q ss_pred HHHHHHHcC-CcHHHHHHHHHHHhcCCc
Q 024858 33 MAVVMKQLD-RSEEAIEAIKSFRGLCSK 59 (261)
Q Consensus 33 Lg~~~~~~g-~~~eAi~~~~~~~~~~P~ 59 (261)
+|-.+..+| +.+||+.++-.++..+|.
T Consensus 96 ~GE~L~~~g~~~~ega~hf~nAl~Vc~q 123 (148)
T TIGR00985 96 LGEELMAQGTNVDEGAVHFYNALKVYPQ 123 (148)
T ss_pred HHHHHHhCCCchHHHHHHHHHHHHhCCC
Confidence 788888888 888888888888888887
No 456
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=39.46 E-value=62 Score=27.34 Aligned_cols=41 Identities=15% Similarity=0.074 Sum_probs=32.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh--hhhHHHHH
Q 024858 126 LGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK--ACNLGLCL 166 (261)
Q Consensus 126 ~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~--~~~L~~~l 166 (261)
+..++.+..+.|+|++.+.+.++++..+|+-.. ..-|..+|
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvay 46 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAY 46 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHH
Confidence 567899999999999999999999999987664 44456655
No 457
>PF03791 KNOX2: KNOX2 domain ; InterPro: IPR005541 The MEINOX region is comprised of two domains, KNOX1 and KNOX2. KNOX1 plays a role in suppressing target gene expression. KNOX2, essential for function, is thought to be necessary for homo-dimerization [].; GO: 0003677 DNA binding, 0005634 nucleus
Probab=39.11 E-value=25 Score=22.32 Aligned_cols=26 Identities=23% Similarity=0.546 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHHhhccCCCCCchhhHhhhh-hhhhh
Q 024858 224 EDEFVNGLEEMVRVWAPSRSKRLPIFEEISS-FRDRI 259 (261)
Q Consensus 224 ~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~ 259 (261)
.|.|.+++-.+|.++. |+|.. ++|++
T Consensus 11 LDqFMeaYc~~L~kyk----------eeL~~p~~EA~ 37 (52)
T PF03791_consen 11 LDQFMEAYCDMLVKYK----------EELQRPFQEAM 37 (52)
T ss_pred HHHHHHHHHHHHHHHH----------HHHHHHHHHHH
Confidence 5999999999998775 67776 77665
No 458
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=38.24 E-value=11 Score=36.17 Aligned_cols=119 Identities=10% Similarity=-0.050 Sum_probs=0.0
Q ss_pred CCcHHHHHHHH-HHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcC
Q 024858 41 DRSEEAIEAIK-SFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVR 119 (261)
Q Consensus 41 g~~~eAi~~~~-~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~ 119 (261)
|+...+.+.|- ++-...|.. ...+...-+..+.+.|++..|..++.+.-...-. ..
T Consensus 2 ~~~~~aA~~yL~~A~~a~~~~-~~~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~------------~~---------- 58 (536)
T PF04348_consen 2 GDPRQAAEQYLQQAQQASGEQ-RAQLLLLAARALLQEGDWAQAQALLNQLDPQQLS------------PS---------- 58 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CchhHHHHHHHHHHHhcCcHh-HHHHHHHHHHHHHhCCCHHHHHHHHHhcccccCC------------hH----------
Confidence 33444444443 444333332 3345555678899999999999998875421000 00
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHH--HHhhCCCchh--hhhHHHHHHHcCCHHHHHHHHHHHH
Q 024858 120 QETSRLLGNLAWAYMQKTNFMAAEVVYQK--AQMIDPDANK--ACNLGLCLIKRTRYNEARSVLEDVL 183 (261)
Q Consensus 120 p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~--al~~~P~~~~--~~~L~~~l~~~g~~~eA~~~~~~~l 183 (261)
...+.....+.+...+|++++|+..+.. ...+.+.... +...+.++...|++-+|.+.+-++-
T Consensus 59 -q~~~~~Ll~A~lal~~~~~~~Al~~L~~~~~~~l~~~~~~~~~~l~A~a~~~~~~~l~Aa~~~i~l~ 125 (536)
T PF04348_consen 59 -QQARYQLLRARLALAQGDPEQALSLLNAQDLWQLPPEQQARYHQLRAQAYEQQGDPLAAARERIALD 125 (536)
T ss_dssp --------------------------------------------------------------------
T ss_pred -HHHHHHHHHHHHHHhcCCHHHHHHHhccCCcccCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 0122345568888899999999998874 2222222222 3346888888898888887665433
No 459
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=37.10 E-value=2.9e+02 Score=24.29 Aligned_cols=123 Identities=15% Similarity=0.144 Sum_probs=73.3
Q ss_pred hhhcCCHHHHHHHHHHHHH-cCC------Ch---HH---HHHHHH-HHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHH
Q 024858 3 QLVQKDPEAAIVLFWKAIN-AGD------RV---DS---ALKDMA-VVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNV 68 (261)
Q Consensus 3 ~~~~~~~~~A~~~~~~al~-~~p------~~---~~---al~~Lg-~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~ 68 (261)
.++..||..|..-++++++ +.. +. .+ .+-.+| ..+..+||+.|+..-.-+-.. .|......+.-+
T Consensus 45 LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq-~pEklPpkIleL 123 (309)
T PF07163_consen 45 LVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQ-VPEKLPPKILEL 123 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhc-CcccCCHHHHHH
Confidence 4567899999999999986 311 11 11 122233 345778999998754333222 133211223344
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 024858 69 LIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVY 146 (261)
Q Consensus 69 L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~ 146 (261)
.+-+|.+.|++....+.-..-|.- |.+....+ .+. -+-..|-.++.=+|.++||++..
T Consensus 124 CILLysKv~Ep~amlev~~~WL~~-p~Nq~lp~--------y~~-----------vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 124 CILLYSKVQEPAAMLEVASAWLQD-PSNQSLPE--------YGT-----------VAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhC-cccCCchh--------hHH-----------HHHHHHHHHHhccccHHHHHHHH
Confidence 566899999999999888887763 32211111 000 02244666777789999998876
No 460
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=36.79 E-value=3.7e+02 Score=28.44 Aligned_cols=126 Identities=14% Similarity=0.144 Sum_probs=62.7
Q ss_pred HHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhh
Q 024858 36 VMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQ 115 (261)
Q Consensus 36 ~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~ 115 (261)
....+.+..|=.-.+++.-+..+. ..-..++.| .|+|++|+..+-+.=.- ...+. .+....|+-...
T Consensus 860 Aq~SqkDPkEyLP~L~el~~m~~~-----~rkF~ID~~--L~ry~~AL~hLs~~~~~-~~~e~-----~n~I~kh~Ly~~ 926 (1265)
T KOG1920|consen 860 AQKSQKDPKEYLPFLNELKKMETL-----LRKFKIDDY--LKRYEDALSHLSECGET-YFPEC-----KNYIKKHGLYDE 926 (1265)
T ss_pred HHHhccChHHHHHHHHHHhhchhh-----hhheeHHHH--HHHHHHHHHHHHHcCcc-ccHHH-----HHHHHhcccchh
Confidence 335677888888888887755443 222233433 37888887766553210 00000 001111111000
Q ss_pred -h-hcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchhhhhHHHHHHHcCCHHHHHHHHHH
Q 024858 116 -V-SVRQET---SRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKACNLGLCLIKRTRYNEARSVLED 181 (261)
Q Consensus 116 -~-~l~p~~---~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~L~~~l~~~g~~~eA~~~~~~ 181 (261)
+ ..+|+. ..++...|.-+.+.+.+++|.-.|+++=++ -.--.+|...|++.+|+.+-.+
T Consensus 927 aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl-------ekAl~a~~~~~dWr~~l~~a~q 990 (1265)
T KOG1920|consen 927 ALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL-------EKALKAYKECGDWREALSLAAQ 990 (1265)
T ss_pred hhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH-------HHHHHHHHHhccHHHHHHHHHh
Confidence 0 111221 124455677778888888887777664222 1222455566666666655554
No 461
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=36.30 E-value=44 Score=33.28 Aligned_cols=119 Identities=9% Similarity=0.129 Sum_probs=70.5
Q ss_pred hHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCc--h----hHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHhhcchhh
Q 024858 26 VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK--Q----SQESLDNVLI-DLYKKCGKVEEQIEMLKRKLRLIYQGEA 98 (261)
Q Consensus 26 ~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~--~----~~~~~~~~L~-~ly~~~g~~~eA~~~~~~al~l~~~~~~ 98 (261)
.++...+|-..|....+|+--|.+.+..-++ |+ + .+....+..+ +=--+-|+-++|+...-.+++...+
T Consensus 200 ~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i-P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~--- 275 (1226)
T KOG4279|consen 200 HPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI-PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGP--- 275 (1226)
T ss_pred CHHHHHHHHhhhccccchHHHHHHHHHHHhC-cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCC---
Confidence 4677788888888889998888887765544 53 0 0000001000 0002356777777777776664211
Q ss_pred hcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHH---------HHcCCHHHHHHHHHHHHhhCCCchhhhhHHHHHHHc
Q 024858 99 FNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAY---------MQKTNFMAAEVVYQKAQMIDPDANKACNLGLCLIKR 169 (261)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~---------~~~g~~~eA~~~~~~al~~~P~~~~~~~L~~~l~~~ 169 (261)
-.|+.+..-|.+| ...+..+.|++.|++|.+..|.-..-.|++..+...
T Consensus 276 ----------------------vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~sGIN~atLL~aa 333 (1226)
T KOG4279|consen 276 ----------------------VAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYSGINLATLLRAA 333 (1226)
T ss_pred ----------------------CCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhccccHHHHHHHh
Confidence 1122232333333 345667889999999999999766556666666655
Q ss_pred C
Q 024858 170 T 170 (261)
Q Consensus 170 g 170 (261)
|
T Consensus 334 G 334 (1226)
T KOG4279|consen 334 G 334 (1226)
T ss_pred h
Confidence 5
No 462
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=36.24 E-value=5.1e+02 Score=26.83 Aligned_cols=22 Identities=14% Similarity=-0.029 Sum_probs=11.5
Q ss_pred HHHHcCCHHHHHHHHHHHHhhC
Q 024858 132 AYMQKTNFMAAEVVYQKAQMID 153 (261)
Q Consensus 132 ~~~~~g~~~eA~~~~~~al~~~ 153 (261)
+-..|.++.|=+.++++.-++.
T Consensus 881 Aq~SQkDPKEYLPfL~~L~~l~ 902 (928)
T PF04762_consen 881 AQQSQKDPKEYLPFLQELQKLP 902 (928)
T ss_pred HHHhccChHHHHHHHHHHHhCC
Confidence 3344555555555555544443
No 463
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=36.10 E-value=49 Score=24.32 Aligned_cols=26 Identities=31% Similarity=0.470 Sum_probs=22.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 024858 66 DNVLIDLYKKCGKVEEQIEMLKRKLR 91 (261)
Q Consensus 66 ~~~L~~ly~~~g~~~eA~~~~~~al~ 91 (261)
...|+.+|...|.+++|++.+++...
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 34588999999999999999998655
No 464
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=35.93 E-value=3.3e+02 Score=25.27 Aligned_cols=106 Identities=13% Similarity=0.128 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCch-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHH
Q 024858 28 SALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ-SQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKT 106 (261)
Q Consensus 28 ~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~-~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~ 106 (261)
.++..+|.-|...|+++.|+..|-++...+-.. ...+...++..+-...|+|..-...-.++..- |.+ .. ..
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st-~~~--~~----~~ 223 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST-PDA--NE----NL 223 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC-chh--hh----hH
Confidence 456779999999999999999999987776541 11122333444445668888777776666542 211 00 00
Q ss_pred HhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 024858 107 ARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQM 151 (261)
Q Consensus 107 ~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~ 151 (261)
.+.. ++.+...-|.+...+++|+.|.++|-.+-.
T Consensus 224 ~q~v-----------~~kl~C~agLa~L~lkkyk~aa~~fL~~~~ 257 (466)
T KOG0686|consen 224 AQEV-----------PAKLKCAAGLANLLLKKYKSAAKYFLLAEF 257 (466)
T ss_pred HHhc-----------CcchHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 0000 123445567777788899999999877643
No 465
>COG3107 LppC Putative lipoprotein [General function prediction only]
Probab=35.11 E-value=2.9e+02 Score=26.58 Aligned_cols=87 Identities=13% Similarity=0.120 Sum_probs=60.2
Q ss_pred hhcCCHHHHHH-HHHHHHHcCCChHHHHHHH-HHHHHHcCCcHHHHHHHHHHH-hcCCchhHHHHHHHHHHHHHHcCCHH
Q 024858 4 LVQKDPEAAIV-LFWKAINAGDRVDSALKDM-AVVMKQLDRSEEAIEAIKSFR-GLCSKQSQESLDNVLIDLYKKCGKVE 80 (261)
Q Consensus 4 ~~~~~~~~A~~-~~~~al~~~p~~~~al~~L-g~~~~~~g~~~eAi~~~~~~~-~~~P~~~~~~~~~~L~~ly~~~g~~~ 80 (261)
...|+.....+ +..++-...++...-|..+ +.++++.|+...|..++.+.- .+.|.. ......+.+.+...+.++.
T Consensus 38 ~lq~~a~a~s~~yl~qa~qs~~~~~~~~~llAa~al~~e~k~~qA~~Ll~ql~~~Ltd~Q-~~~~~LL~ael~la~~q~~ 116 (604)
T COG3107 38 LLQGTANASSQFYLQQAQQSSGEQQNDWLLLAARALVEEGKTAQAQALLNQLPQELTDAQ-RAEKSLLAAELALAQKQPA 116 (604)
T ss_pred hccCCcchhHHHHHHHHhhcCchhhhhHHHHHHHHHHHcCChHHHHHHHHhccccCCHHH-HHHHHHHHHHHHHhccChH
Confidence 45566666444 4445555555554445544 678899999999999998876 566653 2334556788889999999
Q ss_pred HHHHHHHHHHH
Q 024858 81 EQIEMLKRKLR 91 (261)
Q Consensus 81 eA~~~~~~al~ 91 (261)
.|.+.+.+..-
T Consensus 117 ~Al~~L~~~~~ 127 (604)
T COG3107 117 AALQQLAKLLP 127 (604)
T ss_pred HHHHHHhhcch
Confidence 99998887543
No 466
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]
Probab=35.02 E-value=3.5e+02 Score=26.60 Aligned_cols=78 Identities=22% Similarity=0.284 Sum_probs=48.2
Q ss_pred Cchh-hhhHHHHHHHcCCHHHHHHHHHHHHhCCCCCCc-------------chhhHHHHHHHHHHHHhcCCCCchhhhcc
Q 024858 155 DANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCE-------------DGRTRKRAEELLLELESKQPPPDLSDLLG 220 (261)
Q Consensus 155 ~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~~~~~~-------------~~~~~~~a~~~l~~l~~~~~~~~~~~~~~ 220 (261)
|... |...|.++.+.|++..|..-|++++.....+.+ -+...+...+++..+.. |.+...+ -+
T Consensus 585 D~f~aW~AWGlA~Lk~e~~aaAR~KFkqafklkgedipdvi~diin~ieGgpp~dVq~Vrem~dhlak--~aptild-dS 661 (1141)
T KOG1811|consen 585 DTFGAWHAWGLACLKAENLAAAREKFKQAFKLKGEDIPDVIFDIINLIEGGPPRDVQDVREMLDHLAK--PAPTILD-DS 661 (1141)
T ss_pred CcccHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCccchHHHHHHHhhcCCCcchHHHHHHHHHHhcc--CCccccc-cc
Confidence 4445 889999999999999999999999996321111 13444556666666543 1111111 11
Q ss_pred cchhHHHHHHHHHHHH
Q 024858 221 LNLEDEFVNGLEEMVR 236 (261)
Q Consensus 221 ~~~~d~~~~~~~~~l~ 236 (261)
++ .|+|...+.....
T Consensus 662 Lq-aD~Y~~~Lh~~ea 676 (1141)
T KOG1811|consen 662 LQ-ADDYFATLHELEA 676 (1141)
T ss_pred cc-chhHHHHHHhhhh
Confidence 11 3777777776654
No 467
>KOG2460 consensus Signal recognition particle, subunit Srp68 [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.32 E-value=1.9e+02 Score=27.68 Aligned_cols=25 Identities=12% Similarity=0.194 Sum_probs=21.9
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 161 NLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 161 ~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
.++..|...++|.||..+|.++...
T Consensus 427 ~iA~sY~a~~K~~EAlALy~Ra~sy 451 (593)
T KOG2460|consen 427 YIAVSYQAKKKYSEALALYVRAYSY 451 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999988774
No 468
>PF14852 Fis1_TPR_N: Fis1 N-terminal tetratricopeptide repeat; PDB: 1IYG_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A 1PC2_A 1NZN_A.
Probab=33.73 E-value=92 Score=17.88 Aligned_cols=27 Identities=15% Similarity=0.176 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHcCCH---HHHHHHHHHHHh
Q 024858 125 LLGNLAWAYMQKTNF---MAAEVVYQKAQM 151 (261)
Q Consensus 125 ~~~~Lg~~~~~~g~~---~eA~~~~~~al~ 151 (261)
+.+|+||++...... .+.+..++..+.
T Consensus 3 t~FnyAw~Lv~S~~~~d~~~Gi~lLe~l~~ 32 (35)
T PF14852_consen 3 TQFNYAWGLVKSNNREDQQEGIALLEELYR 32 (35)
T ss_dssp HHHHHHHHHHHSSSHHHHHHHHHHHHHHCC
T ss_pred chhHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 456667776665544 344444444433
No 469
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.48 E-value=3.2e+02 Score=24.84 Aligned_cols=28 Identities=21% Similarity=0.150 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 024858 125 LLGNLAWAYMQKTNFMAAEVVYQKAQMI 152 (261)
Q Consensus 125 ~~~~Lg~~~~~~g~~~eA~~~~~~al~~ 152 (261)
++..+|.-|+...+++.|.--|++|.+.
T Consensus 127 ~n~YkaLNYm~~nD~~~ArVEfnRan~r 154 (449)
T COG3014 127 INYYKALNYMLLNDSAKARVEFNRANER 154 (449)
T ss_pred HHHHHHhhHHHhcchhhhHHHHHHHHHH
Confidence 4455788899999999998888888764
No 470
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=32.85 E-value=3.6e+02 Score=24.37 Aligned_cols=48 Identities=13% Similarity=0.156 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhcCCch-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 024858 45 EAIEAIKSFRGLCSKQ-SQESLDNVLIDLYKKCGKVEEQIEMLKRKLRL 92 (261)
Q Consensus 45 eAi~~~~~~~~~~P~~-~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l 92 (261)
|....+..+++.-|+- =..-++..++.++...|-+++.|.+|++|+..
T Consensus 121 ei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~a 169 (353)
T PF15297_consen 121 EILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILA 169 (353)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHc
Confidence 3334555555555541 01122344555555566666666666665554
No 471
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=32.51 E-value=3.1e+02 Score=23.20 Aligned_cols=89 Identities=13% Similarity=0.105 Sum_probs=54.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCh------------HHHHHHHHHHHHHcCCcHHHH--HHHHHHHh--cCCchhHHHHHHHH
Q 024858 6 QKDPEAAIVLFWKAINAGDRV------------DSALKDMAVVMKQLDRSEEAI--EAIKSFRG--LCSKQSQESLDNVL 69 (261)
Q Consensus 6 ~~~~~~A~~~~~~al~~~p~~------------~~al~~Lg~~~~~~g~~~eAi--~~~~~~~~--~~P~~~~~~~~~~L 69 (261)
-|+++.|+.+..-||..+=.. .+-...-+..-...|+.-+.- ..+..+.. --|+....-++...
T Consensus 96 ~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrAKl~K~~ 175 (230)
T PHA02537 96 IGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRAKLYKAA 175 (230)
T ss_pred ccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 589999999999999855222 222333444455556532221 12222221 12444444566777
Q ss_pred HHHHH---------HcCCHHHHHHHHHHHHHhhc
Q 024858 70 IDLYK---------KCGKVEEQIEMLKRKLRLIY 94 (261)
Q Consensus 70 ~~ly~---------~~g~~~eA~~~~~~al~l~~ 94 (261)
|..+. ..++...|+..+++|+.+++
T Consensus 176 G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~ 209 (230)
T PHA02537 176 GYLLLRNEKGEPIGDAETLQLALALLQRAFQLND 209 (230)
T ss_pred HHHHhhcccCCCccCcccHHHHHHHHHHHHHhCC
Confidence 77663 45688899999999999965
No 472
>PRK13883 conjugal transfer protein TrbH; Provisional
Probab=32.08 E-value=61 Score=25.50 Aligned_cols=43 Identities=23% Similarity=0.215 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHhcCCCCchhhhcccchhHHHHHHHHHHHHhhc
Q 024858 197 KRAEELLLELESKQPPPDLSDLLGLNLEDEFVNGLEEMVRVWA 239 (261)
Q Consensus 197 ~~a~~~l~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~ 239 (261)
.-|.++...|....||+.+.+.+....-|.|...|...|++|.
T Consensus 35 ~iA~D~v~qL~~~ypPA~Tt~~l~q~~~D~Fg~aL~~aLR~~G 77 (151)
T PRK13883 35 KLATDAVQQLATLYPPAQTRFELQQPTPDAFGQALVKALRDKG 77 (151)
T ss_pred HHHHHHHHHHHHhCCCcceEEEEecCCCcHHHHHHHHHHHHcC
Confidence 3577788888888899998888877767999999999999886
No 473
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=32.07 E-value=1.2e+02 Score=18.33 Aligned_cols=32 Identities=16% Similarity=0.082 Sum_probs=23.8
Q ss_pred HHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHH
Q 024858 144 VVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEA 175 (261)
Q Consensus 144 ~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA 175 (261)
..|.+|+--+|++.. +...+.-+.++|+.+.|
T Consensus 3 ~all~AI~~~P~ddt~RLvYADWL~e~gdp~ra 35 (42)
T TIGR02996 3 EALLRAILAHPDDDTPRLVYADWLDEHGDPARA 35 (42)
T ss_pred HHHHHHHHhCCCCcchHHHHHHHHHHcCCHHHH
Confidence 346677778888777 77788888888887544
No 474
>PRK13835 conjugal transfer protein TrbH; Provisional
Probab=31.74 E-value=62 Score=25.23 Aligned_cols=44 Identities=18% Similarity=0.258 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHhcCCCCchhhhcccchhHHHHHHHHHHHHhhccCC
Q 024858 197 KRAEELLLELESKQPPPDLSDLLGLNLEDEFVNGLEEMVRVWAPSR 242 (261)
Q Consensus 197 ~~a~~~l~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~ 242 (261)
.-|.++...+....||+.+...+-... |.|...|+..|+.|. |-
T Consensus 41 ~iA~D~vsqLae~~pPa~tt~~l~q~~-d~Fg~aL~~aLr~~G-Ya 84 (145)
T PRK13835 41 AIAGDMVSRLAEQIGPGTTTIKLKKDT-SPFGQALEAALKGWG-YA 84 (145)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEeecC-cHHHHHHHHHHHhcC-eE
Confidence 357788888888888998888888887 999999999999996 53
No 475
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=31.48 E-value=3e+02 Score=22.66 Aligned_cols=24 Identities=17% Similarity=0.097 Sum_probs=12.8
Q ss_pred HHHHHcCCcHHHHHHHHHHHhcCCc
Q 024858 35 VVMKQLDRSEEAIEAIKSFRGLCSK 59 (261)
Q Consensus 35 ~~~~~~g~~~eAi~~~~~~~~~~P~ 59 (261)
.++...|.+++|++.+++... +|+
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~~-d~~ 142 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLFS-DPE 142 (200)
T ss_pred HHHHhcCchHHHHHHHHHHhc-CCC
Confidence 444555555555555555555 444
No 476
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=30.34 E-value=77 Score=28.63 Aligned_cols=61 Identities=18% Similarity=0.053 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 125 LLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 125 ~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
+..|++.+-...+.+..|+-.-..++..+++... ++..+..+....++++|++.++.+...
T Consensus 277 ~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~ 338 (372)
T KOG0546|consen 277 IRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQK 338 (372)
T ss_pred cccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhcc
Confidence 3445555666666666666555555555555555 555666666666666666666665554
No 477
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=29.96 E-value=4.3e+02 Score=24.03 Aligned_cols=53 Identities=17% Similarity=0.111 Sum_probs=37.5
Q ss_pred hhcCCHHHHHHHHHHHHHc-CCChH-HHHHHH--HHHHHHcCCcHHHHHHHHHHHhc
Q 024858 4 LVQKDPEAAIVLFWKAINA-GDRVD-SALKDM--AVVMKQLDRSEEAIEAIKSFRGL 56 (261)
Q Consensus 4 ~~~~~~~~A~~~~~~al~~-~p~~~-~al~~L--g~~~~~~g~~~eAi~~~~~~~~~ 56 (261)
+..+++..|..++...... .+... ..+..+ |..+=..-++.+|.+.++.....
T Consensus 142 ~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 142 FNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4578999999999998874 44433 344444 34445678889999999887654
No 478
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=29.91 E-value=29 Score=26.19 Aligned_cols=74 Identities=16% Similarity=0.178 Sum_probs=48.4
Q ss_pred CCHHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHH
Q 024858 7 KDPEAAIVLFWKAINAGD-RVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEM 85 (261)
Q Consensus 7 ~~~~~A~~~~~~al~~~p-~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~ 85 (261)
+.+.....+++..+..++ ..+..+..+..+|.+.++.++....++..-..++. ..+.+..+.|.+++|+-+
T Consensus 21 ~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~yd~~--------~~~~~c~~~~l~~~a~~L 92 (143)
T PF00637_consen 21 NQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNNYDLD--------KALRLCEKHGLYEEAVYL 92 (143)
T ss_dssp T-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSSS-CT--------HHHHHHHTTTSHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccccCHH--------HHHHHHHhcchHHHHHHH
Confidence 356667778888886554 44777778999999998888888887632222222 133444677777777777
Q ss_pred HHH
Q 024858 86 LKR 88 (261)
Q Consensus 86 ~~~ 88 (261)
|.+
T Consensus 93 y~~ 95 (143)
T PF00637_consen 93 YSK 95 (143)
T ss_dssp HHC
T ss_pred HHH
Confidence 766
No 479
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=29.81 E-value=2.8e+02 Score=25.09 Aligned_cols=60 Identities=12% Similarity=0.023 Sum_probs=46.6
Q ss_pred HHHHHHHH--HHcCCHH-HHHHHHHHHHhhCCCch---h-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 126 LGNLAWAY--MQKTNFM-AAEVVYQKAQMIDPDAN---K-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 126 ~~~Lg~~~--~~~g~~~-eA~~~~~~al~~~P~~~---~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
...|+.|+ ...|-.. |....+...+..-|+-. . |.-++.++...|.+++.+.+|++|+..
T Consensus 103 n~tlsECl~Li~eGcp~eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~a 169 (353)
T PF15297_consen 103 NKTLSECLNLIEEGCPKEEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILA 169 (353)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHc
Confidence 34566665 4456554 67778888888888754 4 888999999999999999999999886
No 480
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=29.48 E-value=1.6e+02 Score=27.44 Aligned_cols=61 Identities=15% Similarity=0.065 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 125 LLGNLAWAYMQKTNFMAAEVVYQKAQM--IDPDANKACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 125 ~~~~Lg~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
+...+-..|...|..++++..++.=+. +.||+...+.|-..+++.|+|..|.++...+...
T Consensus 105 t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQ 167 (429)
T PF10037_consen 105 THHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQ 167 (429)
T ss_pred cHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHh
Confidence 345667778889999999998876554 5688888788888899999999999988765553
No 481
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=29.37 E-value=2.9e+02 Score=26.80 Aligned_cols=78 Identities=13% Similarity=0.146 Sum_probs=48.2
Q ss_pred cCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHH
Q 024858 6 QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEM 85 (261)
Q Consensus 6 ~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~ 85 (261)
++..+.+....+.-+......+-.+..-+..+...|..+.|-++|++.+..+|++.... .+.-+.+.|-..+|-..
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 96 (578)
T PRK15490 21 EKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNNDEARYE----YARRLYNTGLAKDAQLI 96 (578)
T ss_pred HhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCcchHHH----HHHHHHhhhhhhHHHHH
Confidence 34455555555544444444455556667777888888888888888888888743322 23333566666666665
Q ss_pred HH
Q 024858 86 LK 87 (261)
Q Consensus 86 ~~ 87 (261)
++
T Consensus 97 ~~ 98 (578)
T PRK15490 97 LK 98 (578)
T ss_pred HH
Confidence 55
No 482
>PF07283 TrbH: Conjugal transfer protein TrbH; InterPro: IPR010837 This entry represents TrbH, a bacterial conjugal transfer protein approximately 150 residues long. TrbH contains a putative membrane lipoprotein lipid attachment site [].
Probab=29.32 E-value=74 Score=24.03 Aligned_cols=42 Identities=24% Similarity=0.296 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhcCCCCchhhhcccchhHHHHHHHHHHHHhhc
Q 024858 198 RAEELLLELESKQPPPDLSDLLGLNLEDEFVNGLEEMVRVWA 239 (261)
Q Consensus 198 ~a~~~l~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~ 239 (261)
-|.++...|....||+.+.+.+....-|.|...|.+.|+.|.
T Consensus 8 iA~D~v~qL~~~ypPA~Tt~~L~q~~~d~Fg~aL~~~LR~~G 49 (121)
T PF07283_consen 8 IAGDMVSQLAEQYPPAKTTFELKQKDPDPFGQALENALRAKG 49 (121)
T ss_pred HHHHHHHHHHHhcCCCccEEEEEcCCCChHHHHHHHHHHhcC
Confidence 467777888888899999888855556999999999999885
No 483
>PF14929 TAF1_subA: TAF RNA Polymerase I subunit A
Probab=28.49 E-value=5.5e+02 Score=24.82 Aligned_cols=45 Identities=16% Similarity=0.216 Sum_probs=24.8
Q ss_pred HHHHHHHHHHH---HhhCCCchhhhhHHHHHHH-cCCHHHHHHHHHHHH
Q 024858 139 FMAAEVVYQKA---QMIDPDANKACNLGLCLIK-RTRYNEARSVLEDVL 183 (261)
Q Consensus 139 ~~eA~~~~~~a---l~~~P~~~~~~~L~~~l~~-~g~~~eA~~~~~~~l 183 (261)
...+....+-. +.+.|..+-|..+..++.+ .++++.-.+..+.++
T Consensus 391 ~~~~~~Lle~i~~~l~~~~s~~iwle~~~~~l~~~~~~~~~~e~~~~~l 439 (547)
T PF14929_consen 391 DYSAEQLLEMIALHLDLVPSHPIWLEFVSCFLKNPSRFEDKEEDHKSAL 439 (547)
T ss_pred HHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHhccccccccHHHHHHHH
Confidence 44444444422 2334666668888888887 566654444444443
No 484
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=28.47 E-value=1.5e+02 Score=21.75 Aligned_cols=26 Identities=19% Similarity=0.004 Sum_probs=19.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 024858 126 LGNLAWAYMQKTNFMAAEVVYQKAQM 151 (261)
Q Consensus 126 ~~~Lg~~~~~~g~~~eA~~~~~~al~ 151 (261)
+..|+..|...|.+++|++.+++...
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 46677788888888888888877665
No 485
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=28.09 E-value=2.1e+02 Score=27.11 Aligned_cols=166 Identities=13% Similarity=0.133 Sum_probs=97.6
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---
Q 024858 15 LFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLR--- 91 (261)
Q Consensus 15 ~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~--- 91 (261)
.|.+++..-|=.++.|+.-..-+...++-+.|....++.+...|. +...++..|-...+.++--.+|++...
T Consensus 290 ~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps-----L~~~lse~yel~nd~e~v~~~fdk~~q~L~ 364 (660)
T COG5107 290 IHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS-----LTMFLSEYYELVNDEEAVYGCFDKCTQDLK 364 (660)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc-----hheeHHHHHhhcccHHHHhhhHHHHHHHHH
Confidence 455666666666777777666677888888899988888888887 333455555555554444444444332
Q ss_pred ----hhcchhh--hcCcc---hHH-------------------Hhhch----hhhhhhcC--C-CcHHHHH-HHHHHHHH
Q 024858 92 ----LIYQGEA--FNGKP---TKT-------------------ARSHG----KKFQVSVR--Q-ETSRLLG-NLAWAYMQ 135 (261)
Q Consensus 92 ----l~~~~~~--~~~~~---~~~-------------------~~~~~----~~~~~~l~--p-~~~~~~~-~Lg~~~~~ 135 (261)
......+ ..|+. ... .+..| +++-..+. | -.++++. +-=.=|..
T Consensus 365 r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~ 444 (660)
T COG5107 365 RKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA 444 (660)
T ss_pred HHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh
Confidence 1111100 00111 000 00000 00000100 1 0122222 11223467
Q ss_pred cCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 136 KTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 136 ~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
+|++.-|...|+--+...||++. ....-..++..++-+.|..+|+.++..
T Consensus 445 ~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r 495 (660)
T COG5107 445 TGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVER 495 (660)
T ss_pred cCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH
Confidence 89999999999999999999998 666778889999999999999988774
No 486
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=27.80 E-value=55 Score=29.49 Aligned_cols=49 Identities=18% Similarity=0.112 Sum_probs=32.0
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCch
Q 024858 12 AIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ 60 (261)
Q Consensus 12 A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~ 60 (261)
|+....-++..++....++...+..+....++++|++-++.+....|++
T Consensus 294 a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d 342 (372)
T KOG0546|consen 294 ARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPND 342 (372)
T ss_pred ceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcch
Confidence 3333333444566666677777777777777777777777777777763
No 487
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=27.54 E-value=1.1e+02 Score=23.62 Aligned_cols=33 Identities=15% Similarity=0.114 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCch
Q 024858 28 SALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ 60 (261)
Q Consensus 28 ~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~ 60 (261)
+++..+-..++..-+.+.|..+|+.++..+|++
T Consensus 77 EaLRDfq~~~iaKle~e~Ae~vY~el~~~~P~H 109 (139)
T PF12583_consen 77 EALRDFQCSWIAKLEPENAEQVYEELLEAHPDH 109 (139)
T ss_dssp HHHHHHHHHHHTTS-HHHHHHHHHHHHHH-TT-
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHHCcch
Confidence 345555566666667788888999999999984
No 488
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=27.18 E-value=3.1e+02 Score=21.50 Aligned_cols=105 Identities=21% Similarity=0.200 Sum_probs=0.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhh------------h------------hcCCCcHH
Q 024858 69 LIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQ------------V------------SVRQETSR 124 (261)
Q Consensus 69 L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~------------~------------~l~p~~~~ 124 (261)
.+......|+.++|+..+.++... ..........+. + -.......
T Consensus 8 ~Ar~aL~~g~~~~A~~~L~~A~~~-----------l~~~~~~~p~~~~~~~~~~~~~~~~iPI~~~~~v~d~~~~~~~~~ 76 (155)
T PF10938_consen 8 KARLALFQGDTDEAKKLLEDAQGK-----------LDAARADDPKLAKAEKILPPAKDDLIPIDAEVIVIDDYVPTPEKK 76 (155)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHH-----------HTS-HHHHHCCB-TT-S--SSSS-EEEEEEEEEEE------HHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH-----------HHHHHhcChHhHhhhhccccCCCceEEEeeEEEEeeccCChHHHH
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh-------hCCCchh--hhhHHHHHHHcCCHHHHHHHHHHHHh
Q 024858 125 LLGNLAWAYMQKTNFMAAEVVYQKAQM-------IDPDANK--ACNLGLCLIKRTRYNEARSVLEDVLY 184 (261)
Q Consensus 125 ~~~~Lg~~~~~~g~~~eA~~~~~~al~-------~~P~~~~--~~~L~~~l~~~g~~~eA~~~~~~~l~ 184 (261)
....-+.-..+.|+...|.+.++-+-. .-|=... ..+.+..++..|++.+|-..+..++.
T Consensus 77 ~ai~~a~~~l~~g~~~~A~~~L~~~~~ei~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~ 145 (155)
T PF10938_consen 77 AAIKTANELLKKGDKQAAREILKLAGSEIDITTALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALD 145 (155)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHTT-EEEEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhcccceeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhc
No 489
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.07 E-value=1e+02 Score=31.42 Aligned_cols=33 Identities=18% Similarity=0.326 Sum_probs=28.3
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 024858 121 ETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMID 153 (261)
Q Consensus 121 ~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~ 153 (261)
++++.|..||..-..+|+.+-|+-+|++.-..+
T Consensus 670 dd~d~w~rLge~Al~qgn~~IaEm~yQ~~knfe 702 (1202)
T KOG0292|consen 670 DDKDVWERLGEEALRQGNHQIAEMCYQRTKNFE 702 (1202)
T ss_pred CcHHHHHHHHHHHHHhcchHHHHHHHHHhhhhh
Confidence 357899999999999999999999999875543
No 490
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=26.58 E-value=3.7e+02 Score=22.23 Aligned_cols=39 Identities=15% Similarity=0.146 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHhhCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHh
Q 024858 139 FMAAEVVYQKAQMIDPDANKACNLGLCLIKRTRYNEARSVLEDVLY 184 (261)
Q Consensus 139 ~~eA~~~~~~al~~~P~~~~~~~L~~~l~~~g~~~eA~~~~~~~l~ 184 (261)
-+|++..-++.... +..+......|++++|...++++..
T Consensus 19 REE~l~lsRei~r~-------s~~aI~~~H~~~~eeA~~~l~~a~~ 57 (204)
T COG2178 19 REEALKLSREIVRL-------SGEAIFLLHRGDFEEAEKKLKKASE 57 (204)
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34555555554333 5556666677777777776666544
No 491
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=25.56 E-value=3.3e+02 Score=21.30 Aligned_cols=138 Identities=12% Similarity=0.074 Sum_probs=72.1
Q ss_pred HHHHHHcCCcHHHHHHHHHHHhcCCch-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchh
Q 024858 34 AVVMKQLDRSEEAIEAIKSFRGLCSKQ-SQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGK 112 (261)
Q Consensus 34 g~~~~~~g~~~eAi~~~~~~~~~~P~~-~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~ 112 (261)
|.-+.-.|..++.++++.+.+...|-. ++-...| +.+ .-+.+--.+.++..=++..-.. .++..+.. ..+.
T Consensus 9 AK~~ildG~V~qGveii~k~v~Ssni~E~NWvICN-iiD----aa~C~yvv~~LdsIGkiFDis~--C~NlKrVi-~C~~ 80 (161)
T PF09205_consen 9 AKERILDGDVKQGVEIIEKTVNSSNIKEYNWVICN-IID----AADCDYVVETLDSIGKIFDISK--CGNLKRVI-ECYA 80 (161)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHHS-HHHHTHHHHH-HHH----H--HHHHHHHHHHHGGGS-GGG---S-THHHH-HHHH
T ss_pred HHHHHHhchHHHHHHHHHHHcCcCCccccceeeee-cch----hhchhHHHHHHHHHhhhcCchh--hcchHHHH-HHHH
Confidence 344566799999999999999887742 2212233 221 2233333343333322211000 01111110 0000
Q ss_pred hhhhhcCCCcHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 113 KFQVSVRQETSRLLGNLAW-AYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 113 ~~~~~l~p~~~~~~~~Lg~-~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
.-+...=+..+|. ++..+|+-+.=.+.++...+-+.-++. ...+|.+|.+.|...+|-++++++-..
T Consensus 81 ------~~n~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 81 ------KRNKLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp ------HTT---HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred ------HhcchHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 0011122344443 457888888888899888875555666 889999999999999999999998775
No 492
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=25.48 E-value=5.3e+02 Score=23.66 Aligned_cols=104 Identities=18% Similarity=0.033 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCC---
Q 024858 62 QESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTN--- 138 (261)
Q Consensus 62 ~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~--- 138 (261)
.+.....||+++.-.|+|+-|...|+-+.+-...+.+.. . .+.+.-..|.++..++.
T Consensus 207 ~E~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~--------~------------~A~~~Em~alsl~~~~~~~~ 266 (414)
T PF12739_consen 207 PEAQMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWK--------Y------------LAGAQEMAALSLLMQGQSIS 266 (414)
T ss_pred hHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHH--------H------------HHhHHHHHHHHHHhcCCCCc
Confidence 344456699999999999999999999766321111100 0 11233344444444442
Q ss_pred -----------HHHHHHHHHHHHh---hCCCchh--hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 139 -----------FMAAEVVYQKAQM---IDPDANK--ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 139 -----------~~eA~~~~~~al~---~~P~~~~--~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
++.|...|.++-. -.|.... ....+.++...|.+.+|...+-++...
T Consensus 267 ~k~~~~~~~~~le~A~~~Y~~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~ 329 (414)
T PF12739_consen 267 AKIRKDEIEPYLENAYYTYLKSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSE 329 (414)
T ss_pred cccccccHHHHHHHHHHHHHhhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 2344444555211 1122332 445677888899988888877766664
No 493
>KOG2709 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.12 E-value=81 Score=29.19 Aligned_cols=28 Identities=14% Similarity=0.184 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 024858 125 LLGNLAWAYMQKTNFMAAEVVYQKAQMI 152 (261)
Q Consensus 125 ~~~~Lg~~~~~~g~~~eA~~~~~~al~~ 152 (261)
+..++|.+|..++++++|+.+|++.|.+
T Consensus 24 ~~V~~gl~~dE~~~~e~a~~~Ye~gl~~ 51 (560)
T KOG2709|consen 24 ASVEQGLCYDEVNDWENALAMYEKGLNL 51 (560)
T ss_pred HHHHhhcchhhhcCHHHHHHHHHHHHHH
Confidence 5578999999999999999999999974
No 494
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=24.65 E-value=1.7e+02 Score=26.94 Aligned_cols=59 Identities=25% Similarity=0.240 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcC------------CcHHHHHHHHHHHhcCCchhHHHHHHHH
Q 024858 9 PEAAIVLFWKAINAGDRVDSALKDMAVVMKQLD------------RSEEAIEAIKSFRGLCSKQSQESLDNVL 69 (261)
Q Consensus 9 ~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g------------~~~eAi~~~~~~~~~~P~~~~~~~~~~L 69 (261)
...|+.++++|.. .+.|++|.++|-+++..| -|.+|..++++|-....+-....+.|+|
T Consensus 334 ~~~Al~yL~kA~d--~ddPetWv~vAEa~I~LGNL~d~eS~eQe~~Y~eAE~iL~kAN~at~GKy~diLdnLl 404 (404)
T PF12753_consen 334 IKKALEYLKKAQD--EDDPETWVDVAEAMIDLGNLYDNESKEQEKAYKEAEKILKKANKATNGKYQDILDNLL 404 (404)
T ss_dssp HHHHHHHHHHHHH--S--TTHHHHHHHHHHHHHHH-SSHHH-HHHHHHHHHHHHHHHHHTT----HHHHHHH-
T ss_pred HHHHHHHHHHhhc--cCChhHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHhhccccchHHHHhhcC
No 495
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=24.31 E-value=3.2e+02 Score=24.48 Aligned_cols=16 Identities=19% Similarity=0.364 Sum_probs=10.5
Q ss_pred CCHHHHHHHHHHHHHh
Q 024858 77 GKVEEQIEMLKRKLRL 92 (261)
Q Consensus 77 g~~~eA~~~~~~al~l 92 (261)
++|++|..+|..+|+.
T Consensus 24 ~nY~eA~~lY~~aleY 39 (439)
T KOG0739|consen 24 KNYEEALRLYQNALEY 39 (439)
T ss_pred hchHHHHHHHHHHHHH
Confidence 5666666666666664
No 496
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=24.22 E-value=3.1e+02 Score=20.46 Aligned_cols=51 Identities=14% Similarity=0.122 Sum_probs=32.6
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHH
Q 024858 30 LKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ 82 (261)
Q Consensus 30 l~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA 82 (261)
+..++.+-...-+.+||-.+++-.-...-. .+.+..+-...+..+|+|.+|
T Consensus 9 LAElAL~atG~HcH~EA~tIa~wL~~~~~~--~E~v~lIr~~sLmNrG~Yq~A 59 (116)
T PF09477_consen 9 LAELALMATGHHCHQEANTIADWLEQEGEM--EEVVALIRLSSLMNRGDYQEA 59 (116)
T ss_dssp HHHHHHHHHTTT-HHHHHHHHHHHHHTTTT--HHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHhCCcH--HHHHHHHHHHHHHhhHHHHHH
Confidence 344566666777888888887766555432 344455556667889999998
No 497
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=23.53 E-value=85 Score=33.26 Aligned_cols=42 Identities=24% Similarity=0.121 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchhhhhHHHH
Q 024858 124 RLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKACNLGLC 165 (261)
Q Consensus 124 ~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~L~~~ 165 (261)
+....+|..|+..|++.+|+..|..|+..--...++..+|.+
T Consensus 243 R~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~~D~lW~a~a 284 (1185)
T PF08626_consen 243 RLQKVLGDLYLLAGRWPDALKEYTEAIEILKSSNDYLWLASA 284 (1185)
T ss_pred hhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhcCcHhhhHHH
Confidence 456779999999999999999999999875544443333333
No 498
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.48 E-value=4.2e+02 Score=26.73 Aligned_cols=102 Identities=21% Similarity=0.204 Sum_probs=62.2
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCch--h-hhhHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchhhHHHHHHHHHHHH-
Q 024858 132 AYMQKTNFMAAEVVYQKAQMIDPDAN--K-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELLLELE- 207 (261)
Q Consensus 132 ~~~~~g~~~eA~~~~~~al~~~P~~~--~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~a~~~l~~l~- 207 (261)
.+.+.+.|+||+..-+.....-|... . +-.+-.=|...|+|++|...+-+++.. ....++.+...+..+.
T Consensus 365 Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn------~~~eWe~~V~~f~e~~~ 438 (846)
T KOG2066|consen 365 WLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN------NAAEWELWVFKFAELDQ 438 (846)
T ss_pred HHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc------hHHHHHHHHHHhccccc
Confidence 56788999999987776555555432 1 333444457789999999999988875 3445555666665543
Q ss_pred -----hcCC--CCchhh-----hcccchhHHHHHHHHHHHHhhcc
Q 024858 208 -----SKQP--PPDLSD-----LLGLNLEDEFVNGLEEMVRVWAP 240 (261)
Q Consensus 208 -----~~~~--~~~~~~-----~~~~~~~d~~~~~~~~~l~~~~~ 240 (261)
.-.| +++... -++..+ -....+|-++...|++
T Consensus 439 l~~Ia~~lPt~~~rL~p~vYemvLve~L-~~~~~~F~e~i~~Wp~ 482 (846)
T KOG2066|consen 439 LTDIAPYLPTGPPRLKPLVYEMVLVEFL-ASDVKGFLELIKEWPG 482 (846)
T ss_pred cchhhccCCCCCcccCchHHHHHHHHHH-HHHHHHHHHHHHhCCh
Confidence 1122 122222 122222 3667788888888873
No 499
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.47 E-value=7e+02 Score=25.53 Aligned_cols=57 Identities=14% Similarity=0.137 Sum_probs=35.0
Q ss_pred HHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 024858 36 VMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIY 94 (261)
Q Consensus 36 ~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~ 94 (261)
++.+.+-|+-|+.+.+. ..++|+. ...+..-.|+-+..+|++++|...|-+.+...+
T Consensus 343 iL~kK~ly~~Ai~LAk~-~~~d~d~-~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le 399 (933)
T KOG2114|consen 343 ILFKKNLYKVAINLAKS-QHLDEDT-LAEIHRKYGDYLYGKGDFDEATDQYIETIGFLE 399 (933)
T ss_pred HHHHhhhHHHHHHHHHh-cCCCHHH-HHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCC
Confidence 34455566666665433 2233332 233445566777888899999888888877644
No 500
>PRK11619 lytic murein transglycosylase; Provisional
Probab=23.02 E-value=7.4e+02 Score=24.44 Aligned_cols=132 Identities=8% Similarity=0.046 Sum_probs=78.0
Q ss_pred HcCCcHHHHHHHHHHHhcCCc--hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhh
Q 024858 39 QLDRSEEAIEAIKSFRGLCSK--QSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQV 116 (261)
Q Consensus 39 ~~g~~~eAi~~~~~~~~~~P~--~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~ 116 (261)
..++.+.....+..+ |. .....+.+-+|..+.+.|+.++|...|+++..- . .|.|.... ...+..+.+
T Consensus 324 ~~~dw~~~~~~i~~L----~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~--~--~fYG~LAa--~~Lg~~~~~ 393 (644)
T PRK11619 324 GTGDRRGLNTWLARL----PMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQ--R--GFYPMVAA--QRLGEEYPL 393 (644)
T ss_pred HccCHHHHHHHHHhc----CHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC--C--CcHHHHHH--HHcCCCCCC
Confidence 556666655555543 32 112346677898888899999999999997442 1 12111000 000111000
Q ss_pred --hcCCCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchhhhhHHHHHHHcCCHHHHHHHHHH
Q 024858 117 --SVRQET-----SRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKACNLGLCLIKRTRYNEARSVLED 181 (261)
Q Consensus 117 --~l~p~~-----~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~L~~~l~~~g~~~eA~~~~~~ 181 (261)
...|.. ..-....+..+.+.|+..+|...+..++.. .+......++..-.+.|.++-++....+
T Consensus 394 ~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~-~~~~~~~~la~~A~~~g~~~~ai~~~~~ 464 (644)
T PRK11619 394 KIDKAPKPDSALTQGPEMARVRELMYWNMDNTARSEWANLVAS-RSKTEQAQLARYAFNQQWWDLSVQATIA 464 (644)
T ss_pred CCCCCCchhhhhccChHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCHHHHHHHHhh
Confidence 000000 012244567788899999999999988875 3333367778888888888888766654
Done!