Query 024858
Match_columns 261
No_of_seqs 218 out of 1315
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 15:38:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024858.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024858hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pl2_A Hypothetical conserved 99.9 4.4E-24 1.5E-28 176.8 20.5 155 2-185 14-180 (217)
2 3vtx_A MAMA; tetratricopeptide 99.9 1.2E-23 4E-28 168.3 20.6 156 2-185 14-170 (184)
3 4gyw_A UDP-N-acetylglucosamine 99.9 1.6E-23 5.5E-28 202.4 19.5 156 2-185 18-174 (723)
4 2pl2_A Hypothetical conserved 99.9 3.1E-23 1.1E-27 171.7 15.6 154 2-184 48-213 (217)
5 4i17_A Hypothetical protein; T 99.9 8E-22 2.7E-26 163.0 20.1 178 2-207 16-224 (228)
6 1w3b_A UDP-N-acetylglucosamine 99.9 7.1E-22 2.4E-26 175.5 20.8 179 4-185 78-266 (388)
7 4eqf_A PEX5-related protein; a 99.9 3.9E-21 1.3E-25 169.2 22.9 182 3-186 75-277 (365)
8 1w3b_A UDP-N-acetylglucosamine 99.9 1.9E-21 6.6E-26 172.7 21.0 230 4-235 10-298 (388)
9 2h6f_A Protein farnesyltransfe 99.9 7.1E-22 2.4E-26 177.8 16.8 156 3-186 107-270 (382)
10 4gyw_A UDP-N-acetylglucosamine 99.9 2.6E-21 8.7E-26 187.0 19.8 137 22-186 4-141 (723)
11 3urz_A Uncharacterized protein 99.9 2.3E-21 7.9E-26 159.3 15.1 155 3-185 14-186 (208)
12 4ga2_A E3 SUMO-protein ligase 99.9 1.2E-21 4.1E-26 153.2 11.5 142 2-171 6-149 (150)
13 1fch_A Peroxisomal targeting s 99.9 1.2E-19 4E-24 159.1 25.2 181 3-186 74-281 (368)
14 4abn_A Tetratricopeptide repea 99.9 8.9E-21 3E-25 174.9 18.4 176 7-185 82-287 (474)
15 3ieg_A DNAJ homolog subfamily 99.9 1.3E-19 4.4E-24 157.1 23.7 181 3-185 13-217 (359)
16 3uq3_A Heat shock protein STI1 99.9 5.8E-20 2E-24 152.6 19.8 178 3-185 15-202 (258)
17 2vq2_A PILW, putative fimbrial 99.9 1.9E-19 6.6E-24 146.4 22.0 157 3-185 18-176 (225)
18 3qky_A Outer membrane assembly 99.8 7.8E-20 2.7E-24 154.4 19.5 174 3-185 25-224 (261)
19 4eqf_A PEX5-related protein; a 99.8 1.4E-20 4.6E-25 165.7 15.0 182 3-185 109-310 (365)
20 2q7f_A YRRB protein; TPR, prot 99.8 1E-19 3.5E-24 150.2 19.2 180 3-185 33-222 (243)
21 2ho1_A Type 4 fimbrial biogene 99.8 2.6E-19 8.8E-24 149.2 21.7 157 3-185 47-204 (252)
22 3as5_A MAMA; tetratricopeptide 99.8 1.2E-19 4.1E-24 142.8 18.3 155 3-185 18-173 (186)
23 3cv0_A Peroxisome targeting si 99.8 4.9E-19 1.7E-23 152.0 23.1 203 3-207 31-267 (327)
24 3uq3_A Heat shock protein STI1 99.8 1.3E-19 4.4E-24 150.5 18.8 155 3-185 48-236 (258)
25 3hym_B Cell division cycle pro 99.8 8.6E-20 2.9E-24 156.9 18.2 181 3-186 66-266 (330)
26 2h6f_A Protein farnesyltransfe 99.8 4.4E-20 1.5E-24 166.1 17.0 154 3-185 141-304 (382)
27 3hym_B Cell division cycle pro 99.8 3.9E-19 1.3E-23 152.8 22.3 229 3-234 32-293 (330)
28 3mkr_A Coatomer subunit epsilo 99.8 1.7E-19 5.8E-24 156.2 19.9 176 3-185 75-264 (291)
29 2q7f_A YRRB protein; TPR, prot 99.8 1.2E-19 4E-24 149.8 18.1 157 26-185 22-188 (243)
30 2y4t_A DNAJ homolog subfamily 99.8 1.9E-19 6.6E-24 162.1 21.0 181 3-185 36-240 (450)
31 4gco_A Protein STI-1; structur 99.8 4.6E-20 1.6E-24 140.2 14.2 121 18-166 4-125 (126)
32 3qou_A Protein YBBN; thioredox 99.8 5.4E-20 1.9E-24 158.7 15.3 160 23-184 113-283 (287)
33 4ga2_A E3 SUMO-protein ligase 99.8 1.2E-20 4.1E-25 147.5 9.9 132 32-194 2-135 (150)
34 3ieg_A DNAJ homolog subfamily 99.8 1E-18 3.5E-23 151.4 23.1 181 3-185 130-335 (359)
35 2pzi_A Probable serine/threoni 99.8 3.4E-20 1.2E-24 178.2 14.8 153 4-185 402-563 (681)
36 2y4t_A DNAJ homolog subfamily 99.8 1.5E-18 5.1E-23 156.2 24.4 181 3-185 153-358 (450)
37 1fch_A Peroxisomal targeting s 99.8 8.7E-19 3E-23 153.5 21.7 181 3-185 108-314 (368)
38 1xnf_A Lipoprotein NLPI; TPR, 99.8 2.3E-19 7.8E-24 150.8 16.8 154 4-186 16-174 (275)
39 3vtx_A MAMA; tetratricopeptide 99.8 1E-18 3.6E-23 139.3 19.8 133 25-185 3-136 (184)
40 2r5s_A Uncharacterized protein 99.8 3.6E-20 1.2E-24 147.9 11.2 153 3-184 16-172 (176)
41 2ho1_A Type 4 fimbrial biogene 99.8 2.5E-18 8.6E-23 143.1 22.5 155 3-185 81-238 (252)
42 2vsy_A XCC0866; transferase, g 99.8 3.7E-19 1.3E-23 166.8 18.9 153 6-186 2-158 (568)
43 3gyz_A Chaperone protein IPGC; 99.8 8.6E-20 2.9E-24 143.5 11.3 127 48-206 23-150 (151)
44 3fp2_A TPR repeat-containing p 99.8 1.3E-18 4.4E-23 159.9 20.6 154 3-185 253-407 (537)
45 3u4t_A TPR repeat-containing p 99.8 1.5E-18 5.2E-23 145.9 19.1 156 3-185 13-171 (272)
46 3gyz_A Chaperone protein IPGC; 99.8 1.9E-19 6.4E-24 141.5 11.5 118 12-157 21-138 (151)
47 4abn_A Tetratricopeptide repea 99.8 5.1E-19 1.8E-23 163.1 16.1 189 40-232 81-313 (474)
48 2xpi_A Anaphase-promoting comp 99.8 2.1E-18 7.3E-23 160.8 20.1 214 4-220 350-591 (597)
49 3mkr_A Coatomer subunit epsilo 99.8 7.1E-18 2.4E-22 145.9 21.9 173 3-186 44-230 (291)
50 2vq2_A PILW, putative fimbrial 99.8 1E-17 3.5E-22 136.1 21.4 155 3-185 52-211 (225)
51 2yhc_A BAMD, UPF0169 lipoprote 99.8 3.4E-18 1.2E-22 141.8 18.4 175 2-185 13-213 (225)
52 4i17_A Hypothetical protein; T 99.8 8.7E-18 3E-22 138.6 20.6 135 23-185 3-146 (228)
53 2xpi_A Anaphase-promoting comp 99.8 6.4E-18 2.2E-22 157.6 22.2 232 3-237 315-579 (597)
54 3cv0_A Peroxisome targeting si 99.8 1.6E-18 5.4E-23 148.8 15.7 155 3-185 148-315 (327)
55 1qqe_A Vesicular transport pro 99.8 4.6E-18 1.6E-22 146.7 18.6 163 3-185 47-228 (292)
56 1xnf_A Lipoprotein NLPI; TPR, 99.8 4.4E-17 1.5E-21 136.8 22.6 180 3-185 53-244 (275)
57 2vgx_A Chaperone SYCD; alterna 99.8 1.4E-18 4.7E-23 135.6 12.3 118 13-158 7-124 (148)
58 3qky_A Outer membrane assembly 99.8 2.2E-17 7.4E-22 139.3 20.1 144 20-186 8-178 (261)
59 2gw1_A Mitochondrial precursor 99.8 5.9E-18 2E-22 154.2 17.5 179 3-185 247-444 (514)
60 1p5q_A FKBP52, FK506-binding p 99.8 3.7E-19 1.3E-23 157.0 8.7 154 6-185 126-294 (336)
61 2vgx_A Chaperone SYCD; alterna 99.8 3.1E-18 1.1E-22 133.6 13.0 134 47-208 7-141 (148)
62 4gco_A Protein STI-1; structur 99.8 1.2E-17 4.2E-22 126.7 15.5 112 52-194 4-116 (126)
63 3urz_A Uncharacterized protein 99.8 1E-17 3.6E-22 137.4 15.9 131 26-184 3-152 (208)
64 3u4t_A TPR repeat-containing p 99.8 9.3E-18 3.2E-22 141.0 15.1 182 2-185 46-250 (272)
65 3edt_B KLC 2, kinesin light ch 99.8 2.1E-17 7.2E-22 138.4 16.3 164 2-185 52-281 (283)
66 2pzi_A Probable serine/threoni 99.8 5.7E-18 1.9E-22 162.8 14.3 144 3-175 443-587 (681)
67 2ond_A Cleavage stimulation fa 99.8 1.6E-17 5.4E-22 144.1 15.8 175 10-185 81-270 (308)
68 3edt_B KLC 2, kinesin light ch 99.8 1.3E-17 4.4E-22 139.7 14.6 164 4-185 12-198 (283)
69 3fp2_A TPR repeat-containing p 99.8 5.1E-17 1.8E-21 149.2 19.3 180 3-185 286-491 (537)
70 2gw1_A Mitochondrial precursor 99.8 2.3E-17 8E-22 150.3 16.9 180 3-185 280-478 (514)
71 2xcb_A PCRH, regulatory protei 99.7 7.1E-18 2.4E-22 129.9 11.2 117 14-158 5-121 (142)
72 2xcb_A PCRH, regulatory protei 99.7 2.6E-17 8.9E-22 126.7 13.8 133 48-208 5-138 (142)
73 2ond_A Cleavage stimulation fa 99.7 2.2E-16 7.7E-21 136.8 21.2 173 10-185 33-232 (308)
74 4g1t_A Interferon-induced prot 99.7 3.2E-16 1.1E-20 142.1 22.9 184 2-185 60-276 (472)
75 3ulq_A Response regulator aspa 99.7 6.5E-17 2.2E-21 143.8 17.1 163 3-185 113-293 (383)
76 3qou_A Protein YBBN; thioredox 99.7 1.2E-16 4E-21 137.7 17.6 126 57-185 113-248 (287)
77 3nf1_A KLC 1, kinesin light ch 99.7 9.8E-17 3.3E-21 136.6 16.6 165 3-185 37-224 (311)
78 1ouv_A Conserved hypothetical 99.7 8.4E-16 2.9E-20 130.0 22.2 175 3-185 16-215 (273)
79 4g1t_A Interferon-induced prot 99.7 9.9E-17 3.4E-21 145.5 16.8 228 6-235 188-457 (472)
80 3nf1_A KLC 1, kinesin light ch 99.7 8.3E-17 2.9E-21 137.0 15.1 165 3-185 79-307 (311)
81 3as5_A MAMA; tetratricopeptide 99.7 4.3E-16 1.5E-20 122.3 17.6 133 25-185 6-139 (186)
82 2fo7_A Synthetic consensus TPR 99.7 6E-16 2.1E-20 114.9 17.2 130 28-185 2-132 (136)
83 3q15_A PSP28, response regulat 99.7 1.5E-16 5.1E-21 141.4 16.3 163 3-185 111-290 (378)
84 1ouv_A Conserved hypothetical 99.7 6.3E-16 2.1E-20 130.8 18.9 172 6-185 55-251 (273)
85 2ifu_A Gamma-SNAP; membrane fu 99.7 2.2E-16 7.6E-21 137.0 16.3 161 3-185 46-223 (307)
86 3upv_A Heat shock protein STI1 99.7 4.3E-16 1.5E-20 116.8 15.2 117 24-168 1-124 (126)
87 1a17_A Serine/threonine protei 99.7 7.2E-16 2.4E-20 119.7 16.7 132 26-185 12-146 (166)
88 1qqe_A Vesicular transport pro 99.7 9.6E-17 3.3E-21 138.3 12.8 164 3-185 87-269 (292)
89 1hh8_A P67PHOX, NCF-2, neutrop 99.7 2E-15 6.7E-20 122.7 19.3 127 28-185 7-150 (213)
90 2lni_A Stress-induced-phosphop 99.7 7E-16 2.4E-20 115.2 15.2 122 22-171 11-133 (133)
91 2e2e_A Formate-dependent nitri 99.7 1.9E-16 6.7E-21 125.5 12.6 120 38-185 21-144 (177)
92 3gw4_A Uncharacterized protein 99.7 4.5E-16 1.5E-20 125.0 14.8 164 3-185 2-176 (203)
93 2c2l_A CHIP, carboxy terminus 99.7 1.5E-16 5.3E-21 136.7 12.5 179 3-185 14-199 (281)
94 2qfc_A PLCR protein; TPR, HTH, 99.7 1.5E-15 5E-20 130.6 18.5 164 3-185 85-266 (293)
95 3sz7_A HSC70 cochaperone (SGT) 99.7 6.5E-16 2.2E-20 121.4 14.7 115 23-165 7-122 (164)
96 2r5s_A Uncharacterized protein 99.7 3.8E-16 1.3E-20 124.4 13.3 134 23-185 2-137 (176)
97 2e2e_A Formate-dependent nitri 99.7 7.6E-16 2.6E-20 122.1 15.0 127 4-158 21-150 (177)
98 3u3w_A Transcriptional activat 99.7 1.2E-15 4.1E-20 131.2 17.2 163 4-185 86-266 (293)
99 2vyi_A SGTA protein; chaperone 99.7 6.9E-16 2.3E-20 114.4 13.5 124 21-172 6-130 (131)
100 2fbn_A 70 kDa peptidylprolyl i 99.7 6.5E-17 2.2E-21 131.0 8.3 153 6-184 17-185 (198)
101 2yhc_A BAMD, UPF0169 lipoprote 99.7 3.1E-15 1E-19 123.8 18.5 137 26-185 3-176 (225)
102 2fo7_A Synthetic consensus TPR 99.7 2E-15 6.8E-20 112.0 15.7 126 3-156 11-136 (136)
103 1kt0_A FKBP51, 51 kDa FK506-bi 99.7 3.9E-17 1.3E-21 150.0 7.3 152 7-184 248-414 (457)
104 4f3v_A ESX-1 secretion system 99.7 3E-15 1E-19 128.6 16.8 181 5-185 18-237 (282)
105 4a1s_A PINS, partner of inscut 99.7 1.3E-15 4.3E-20 135.6 14.9 182 3-186 58-293 (411)
106 1hh8_A P67PHOX, NCF-2, neutrop 99.7 3.9E-15 1.3E-19 120.8 16.6 141 3-158 16-156 (213)
107 4gcn_A Protein STI-1; structur 99.7 1.7E-15 5.8E-20 114.8 13.1 112 25-157 6-117 (127)
108 2hr2_A Hypothetical protein; a 99.6 3E-15 1E-19 117.9 14.1 124 66-203 14-149 (159)
109 1na0_A Designed protein CTPR3; 99.6 9.6E-15 3.3E-19 107.2 15.8 120 23-170 4-125 (125)
110 3rjv_A Putative SEL1 repeat pr 99.6 1.3E-14 4.5E-19 119.3 18.2 167 11-185 4-197 (212)
111 1p5q_A FKBP52, FK506-binding p 99.6 2.5E-17 8.7E-22 145.2 1.8 165 6-185 78-259 (336)
112 3upv_A Heat shock protein STI1 99.6 8E-15 2.7E-19 109.8 15.0 95 65-185 6-101 (126)
113 3ro2_A PINS homolog, G-protein 99.6 3E-15 1E-19 127.8 13.8 183 3-185 15-252 (338)
114 3sf4_A G-protein-signaling mod 99.6 3.4E-15 1.2E-19 131.7 14.5 184 3-186 19-257 (406)
115 2vsy_A XCC0866; transferase, g 99.6 9.3E-15 3.2E-19 136.9 18.1 133 3-163 33-169 (568)
116 3sf4_A G-protein-signaling mod 99.6 1.4E-15 4.8E-20 134.1 11.8 157 9-185 163-336 (406)
117 3q49_B STIP1 homology and U bo 99.6 6E-15 2E-19 111.4 13.3 106 22-155 4-109 (137)
118 4gcn_A Protein STI-1; structur 99.6 4.9E-15 1.7E-19 112.2 12.5 95 65-185 10-112 (127)
119 2hr2_A Hypothetical protein; a 99.6 4.5E-15 1.5E-19 116.9 12.5 120 27-165 11-145 (159)
120 3sz7_A HSC70 cochaperone (SGT) 99.6 3E-14 1E-18 111.8 17.1 98 63-186 11-109 (164)
121 4a1s_A PINS, partner of inscut 99.6 2.6E-15 9E-20 133.5 12.3 182 3-185 96-332 (411)
122 1hxi_A PEX5, peroxisome target 99.6 5E-15 1.7E-19 111.3 11.7 91 69-185 23-114 (121)
123 3rkv_A Putative peptidylprolyl 99.6 6.6E-15 2.3E-19 115.3 12.7 31 26-56 10-40 (162)
124 1elw_A TPR1-domain of HOP; HOP 99.6 4.1E-14 1.4E-18 102.9 15.7 113 26-166 3-116 (118)
125 3ulq_A Response regulator aspa 99.6 1.2E-14 4.2E-19 129.0 15.3 160 3-182 153-332 (383)
126 3rjv_A Putative SEL1 repeat pr 99.6 1.3E-14 4.3E-19 119.4 14.1 138 44-185 3-158 (212)
127 2c2l_A CHIP, carboxy terminus 99.6 4.9E-15 1.7E-19 127.2 12.0 106 24-157 1-106 (281)
128 2ifu_A Gamma-SNAP; membrane fu 99.6 1.2E-14 4E-19 126.0 14.3 160 5-185 3-184 (307)
129 2dba_A Smooth muscle cell asso 99.6 4E-14 1.4E-18 107.6 15.4 122 21-168 22-145 (148)
130 1hxi_A PEX5, peroxisome target 99.6 1.1E-14 3.9E-19 109.3 12.1 94 29-157 19-119 (121)
131 3ro2_A PINS homolog, G-protein 99.6 7.6E-15 2.6E-19 125.3 11.8 157 9-185 159-332 (338)
132 1hz4_A MALT regulatory protein 99.6 8.1E-14 2.8E-18 122.8 18.5 165 3-185 24-203 (373)
133 2ooe_A Cleavage stimulation fa 99.6 7.7E-14 2.6E-18 129.5 19.2 153 6-185 292-454 (530)
134 2fbn_A 70 kDa peptidylprolyl i 99.6 7E-15 2.4E-19 119.0 10.4 149 25-185 2-151 (198)
135 3q15_A PSP28, response regulat 99.6 1.1E-13 3.9E-18 122.8 19.0 158 3-181 151-328 (378)
136 1a17_A Serine/threonine protei 99.6 6E-14 2.1E-18 108.7 14.8 123 3-153 23-147 (166)
137 1wao_1 Serine/threonine protei 99.6 8.8E-16 3E-20 141.8 4.4 127 26-180 5-134 (477)
138 1wao_1 Serine/threonine protei 99.6 6.3E-15 2.1E-19 136.0 9.7 129 2-158 15-156 (477)
139 1elr_A TPR2A-domain of HOP; HO 99.6 5.7E-14 1.9E-18 104.0 12.9 125 24-170 1-126 (131)
140 2if4_A ATFKBP42; FKBP-like, al 99.6 7.7E-15 2.6E-19 129.4 9.2 137 23-185 175-328 (338)
141 2kck_A TPR repeat; tetratricop 99.6 2.4E-14 8.2E-19 103.3 10.0 67 24-92 3-69 (112)
142 3rkv_A Putative peptidylprolyl 99.5 1.9E-13 6.5E-18 106.9 15.6 113 65-185 13-126 (162)
143 2xev_A YBGF; tetratricopeptide 99.5 1.4E-13 4.7E-18 102.7 14.1 104 29-158 4-111 (129)
144 2ooe_A Cleavage stimulation fa 99.5 2.9E-13 9.8E-18 125.6 19.3 172 10-209 255-454 (530)
145 1ihg_A Cyclophilin 40; ppiase 99.5 9.6E-14 3.3E-18 124.1 15.0 124 27-178 223-363 (370)
146 1zu2_A Mitochondrial import re 99.5 1.8E-14 6.2E-19 113.2 8.2 104 8-163 17-132 (158)
147 3dra_A Protein farnesyltransfe 99.5 7E-13 2.4E-17 115.6 19.0 150 8-185 48-215 (306)
148 3ro3_A PINS homolog, G-protein 99.5 2.6E-13 9E-18 103.6 14.4 140 26-185 8-158 (164)
149 3q49_B STIP1 homology and U bo 99.5 2.9E-13 9.9E-18 102.0 14.3 95 65-185 11-106 (137)
150 2kck_A TPR repeat; tetratricop 99.5 1.1E-13 3.8E-18 99.8 10.9 102 57-186 2-107 (112)
151 1elw_A TPR1-domain of HOP; HOP 99.5 1.6E-12 5.5E-17 94.3 16.5 95 65-185 6-101 (118)
152 3k9i_A BH0479 protein; putativ 99.5 5.5E-14 1.9E-18 104.3 8.5 91 40-158 3-96 (117)
153 2xm6_A Protein corresponding t 99.5 1.9E-12 6.4E-17 118.9 20.2 173 5-185 235-432 (490)
154 1kt0_A FKBP51, 51 kDa FK506-bi 99.5 5.9E-14 2E-18 128.7 9.8 164 8-186 201-381 (457)
155 2vyi_A SGTA protein; chaperone 99.5 6E-13 2E-17 98.3 13.3 109 3-139 22-130 (131)
156 2xm6_A Protein corresponding t 99.5 3.7E-12 1.3E-16 117.0 21.1 172 6-185 56-252 (490)
157 2lni_A Stress-induced-phosphop 99.5 4.4E-13 1.5E-17 99.7 12.3 108 3-138 26-133 (133)
158 3k9i_A BH0479 protein; putativ 99.5 7.4E-14 2.5E-18 103.6 7.9 88 75-185 2-90 (117)
159 1dce_A Protein (RAB geranylger 99.5 1.1E-12 3.9E-17 123.4 17.5 149 9-185 45-221 (567)
160 2qfc_A PLCR protein; TPR, HTH, 99.5 2.7E-12 9.2E-17 110.1 18.1 142 24-185 72-225 (293)
161 2xev_A YBGF; tetratricopeptide 99.5 2.1E-12 7.3E-17 96.1 14.8 96 67-185 6-105 (129)
162 2dba_A Smooth muscle cell asso 99.5 3E-12 1E-16 97.0 15.3 99 64-185 29-128 (148)
163 3e4b_A ALGK; tetratricopeptide 99.5 1.4E-12 4.9E-17 119.2 15.7 141 8-185 194-351 (452)
164 3gw4_A Uncharacterized protein 99.4 1.2E-12 4.3E-17 104.7 13.5 136 2-157 35-181 (203)
165 2if4_A ATFKBP42; FKBP-like, al 99.4 1.8E-13 6.1E-18 120.6 8.6 128 3-158 189-334 (338)
166 1elr_A TPR2A-domain of HOP; HO 99.4 2.6E-12 8.8E-17 94.9 13.1 95 65-185 6-108 (131)
167 1hz4_A MALT regulatory protein 99.4 6.4E-12 2.2E-16 110.6 17.9 165 2-185 102-282 (373)
168 1na0_A Designed protein CTPR3; 99.4 4.3E-12 1.5E-16 92.8 14.2 107 3-137 19-125 (125)
169 3q7a_A Farnesyltransferase alp 99.4 6.7E-12 2.3E-16 110.9 17.5 151 7-185 68-237 (349)
170 3dss_A Geranylgeranyl transfer 99.4 2.7E-11 9.1E-16 106.5 20.6 152 6-185 42-222 (331)
171 4f3v_A ESX-1 secretion system 99.4 1.8E-12 6.3E-17 111.3 12.8 134 3-162 112-247 (282)
172 3mv2_B Coatomer subunit epsilo 99.4 2E-11 6.8E-16 106.1 19.3 169 12-185 85-282 (310)
173 3dra_A Protein farnesyltransfe 99.4 1.6E-11 5.4E-16 107.0 18.5 151 7-185 83-250 (306)
174 1zu2_A Mitochondrial import re 99.4 5.1E-13 1.7E-17 104.9 8.1 85 75-185 14-120 (158)
175 3ro3_A PINS homolog, G-protein 99.4 4.6E-12 1.6E-16 96.6 13.0 133 3-155 19-161 (164)
176 4b4t_Q 26S proteasome regulato 99.4 4.9E-12 1.7E-16 113.2 15.2 162 4-185 15-204 (434)
177 3u3w_A Transcriptional activat 99.4 5.5E-12 1.9E-16 108.1 14.0 136 30-185 78-225 (293)
178 3n71_A Histone lysine methyltr 99.4 4.8E-12 1.6E-16 117.1 13.8 135 33-185 315-464 (490)
179 3dss_A Geranylgeranyl transfer 99.4 5.5E-11 1.9E-15 104.5 19.3 149 9-185 90-267 (331)
180 3e4b_A ALGK; tetratricopeptide 99.3 4.4E-11 1.5E-15 109.3 17.4 142 5-185 229-387 (452)
181 1ihg_A Cyclophilin 40; ppiase 99.3 1E-11 3.4E-16 110.9 12.4 115 3-145 233-363 (370)
182 2l6j_A TPR repeat-containing p 99.3 9.6E-13 3.3E-17 95.3 4.7 91 65-181 6-103 (111)
183 3ma5_A Tetratricopeptide repea 99.3 8.7E-12 3E-16 90.0 9.6 67 119-185 3-70 (100)
184 2kat_A Uncharacterized protein 99.3 1.3E-11 4.5E-16 90.7 9.9 66 120-185 16-82 (115)
185 1na3_A Designed protein CTPR2; 99.3 5.3E-11 1.8E-15 82.9 12.1 80 65-170 11-91 (91)
186 1dce_A Protein (RAB geranylger 99.3 1.3E-11 4.3E-16 116.3 11.3 138 9-174 89-244 (567)
187 2kat_A Uncharacterized protein 99.3 4E-11 1.4E-15 88.0 11.3 82 11-94 3-84 (115)
188 3n71_A Histone lysine methyltr 99.3 4.3E-11 1.5E-15 110.7 14.0 131 5-153 321-465 (490)
189 3mv2_B Coatomer subunit epsilo 99.3 1.1E-10 3.9E-15 101.4 14.7 145 29-185 73-240 (310)
190 1klx_A Cysteine rich protein B 99.2 2.4E-10 8.1E-15 87.6 13.5 113 5-153 7-127 (138)
191 2l6j_A TPR repeat-containing p 99.2 9E-12 3.1E-16 90.1 4.5 101 26-148 3-103 (111)
192 1na3_A Designed protein CTPR2; 99.2 3E-10 1E-14 78.9 11.3 86 24-137 6-91 (91)
193 3q7a_A Farnesyltransferase alp 99.2 7E-10 2.4E-14 98.0 15.4 137 8-172 104-258 (349)
194 1xi4_A Clathrin heavy chain; a 99.1 9.4E-10 3.2E-14 110.9 16.8 155 7-184 1090-1249(1630)
195 1klx_A Cysteine rich protein B 99.1 1.1E-09 3.7E-14 83.8 12.7 109 41-185 9-126 (138)
196 3ma5_A Tetratricopeptide repea 99.1 5.2E-10 1.8E-14 80.5 9.5 71 22-94 2-72 (100)
197 1xi4_A Clathrin heavy chain; a 99.1 3.1E-09 1.1E-13 107.1 17.9 170 2-185 1114-1309(1630)
198 4b4t_Q 26S proteasome regulato 99.1 4.9E-10 1.7E-14 100.1 10.6 162 4-185 66-245 (434)
199 2kc7_A BFR218_protein; tetratr 99.1 4.3E-10 1.5E-14 79.9 8.1 83 69-185 6-90 (99)
200 3qww_A SET and MYND domain-con 99.0 5.8E-10 2E-14 101.6 10.0 103 74-194 309-422 (433)
201 2kc7_A BFR218_protein; tetratr 99.0 3.7E-10 1.3E-14 80.3 6.2 92 31-157 4-95 (99)
202 1b89_A Protein (clathrin heavy 99.0 5.9E-11 2E-15 107.7 2.0 155 6-182 16-174 (449)
203 3qww_A SET and MYND domain-con 99.0 2.7E-09 9.1E-14 97.2 11.5 103 38-158 309-422 (433)
204 3bee_A Putative YFRE protein; 98.9 1.3E-08 4.6E-13 72.7 11.7 70 119-188 2-75 (93)
205 3ly7_A Transcriptional activat 98.9 7.5E-09 2.6E-13 91.7 12.2 122 8-158 214-345 (372)
206 3qwp_A SET and MYND domain-con 98.9 4.5E-09 1.5E-13 95.6 10.1 116 72-206 296-422 (429)
207 3qwp_A SET and MYND domain-con 98.9 1.4E-08 4.8E-13 92.3 12.6 117 35-169 295-426 (429)
208 3ly7_A Transcriptional activat 98.9 8E-08 2.7E-12 85.1 16.2 145 19-185 186-339 (372)
209 1b89_A Protein (clathrin heavy 98.8 5.9E-09 2E-13 94.6 7.6 139 6-181 161-307 (449)
210 3bee_A Putative YFRE protein; 98.7 1.4E-07 4.7E-12 67.3 9.2 71 23-95 2-75 (93)
211 4e6h_A MRNA 3'-END-processing 98.7 5.3E-07 1.8E-11 86.4 15.8 173 10-185 326-533 (679)
212 3u64_A Protein TP_0956; tetrat 98.6 1.1E-06 3.8E-11 75.1 15.8 102 79-206 179-295 (301)
213 2v5f_A Prolyl 4-hydroxylase su 98.6 3.5E-07 1.2E-11 66.2 10.8 79 66-163 8-87 (104)
214 4e6h_A MRNA 3'-END-processing 98.6 9.9E-07 3.4E-11 84.5 15.4 179 4-185 354-570 (679)
215 4g26_A Pentatricopeptide repea 98.5 1E-05 3.5E-10 74.8 20.2 152 5-185 38-204 (501)
216 3u64_A Protein TP_0956; tetrat 98.5 6.3E-07 2.1E-11 76.7 10.9 110 22-156 147-273 (301)
217 1pc2_A Mitochondria fission pr 98.5 1.1E-06 3.6E-11 68.3 10.7 80 120-206 29-114 (152)
218 2v5f_A Prolyl 4-hydroxylase su 98.3 4.4E-06 1.5E-10 60.3 10.3 63 123-185 5-75 (104)
219 1pc2_A Mitochondria fission pr 98.3 6.8E-06 2.3E-10 63.7 10.9 87 7-94 12-102 (152)
220 4g26_A Pentatricopeptide repea 98.1 0.00024 8E-09 65.7 19.3 153 29-209 28-204 (501)
221 2uy1_A Cleavage stimulation fa 98.1 0.0002 6.9E-09 65.9 17.2 163 9-182 195-380 (493)
222 3ffl_A Anaphase-promoting comp 97.6 0.0006 2E-08 53.3 9.9 95 71-182 28-148 (167)
223 1nzn_A CGI-135 protein, fissio 97.6 0.00035 1.2E-08 52.2 8.2 79 121-206 33-117 (126)
224 1nzn_A CGI-135 protein, fissio 97.4 0.0028 9.7E-08 47.2 11.9 86 8-94 16-105 (126)
225 4h7y_A Dual specificity protei 97.4 0.0075 2.6E-07 46.3 13.5 115 70-209 20-141 (161)
226 1y8m_A FIS1; mitochondria, unk 97.3 0.0033 1.1E-07 47.8 11.1 78 122-206 38-120 (144)
227 3o48_A Mitochondria fission 1 97.3 0.003 1E-07 47.4 10.5 78 122-206 39-121 (134)
228 2uy1_A Cleavage stimulation fa 97.2 0.011 3.7E-07 54.3 15.7 170 3-184 223-412 (493)
229 3ffl_A Anaphase-promoting comp 97.1 0.0048 1.6E-07 48.1 10.3 116 30-148 23-147 (167)
230 4h7y_A Dual specificity protei 97.1 0.018 6.2E-07 44.2 13.0 128 21-171 7-142 (161)
231 2ff4_A Probable regulatory pro 96.9 0.016 5.6E-07 51.4 13.1 105 75-184 127-233 (388)
232 4gns_B Protein CSD3, chitin bi 96.8 0.013 4.3E-07 56.6 12.6 134 39-182 260-397 (754)
233 3mkq_A Coatomer beta'-subunit; 96.6 0.072 2.5E-06 50.8 16.2 112 38-181 663-774 (814)
234 2ff4_A Probable regulatory pro 96.2 0.048 1.6E-06 48.4 11.6 85 6-92 128-234 (388)
235 3spa_A Mtrpol, DNA-directed RN 96.0 0.07 2.4E-06 53.0 12.4 99 65-185 129-230 (1134)
236 1ya0_A SMG-7 transcript varian 96.0 0.063 2.1E-06 49.3 11.5 62 124-185 153-215 (497)
237 4gns_B Protein CSD3, chitin bi 95.6 0.25 8.6E-06 47.6 14.3 115 9-149 265-397 (754)
238 3mkq_A Coatomer beta'-subunit; 95.5 0.34 1.2E-05 46.0 15.2 44 5-53 664-707 (814)
239 3mkq_B Coatomer subunit alpha; 95.5 0.49 1.7E-05 37.1 13.4 54 27-90 8-61 (177)
240 1zbp_A Hypothetical protein VP 95.4 0.18 6.3E-06 42.3 11.1 56 4-59 8-63 (273)
241 3o48_A Mitochondria fission 1 95.3 0.063 2.2E-06 40.2 7.4 86 9-96 23-111 (134)
242 3txn_A 26S proteasome regulato 95.3 1.5 5E-05 39.0 17.4 98 68-185 104-210 (394)
243 3spa_A Mtrpol, DNA-directed RN 95.2 0.25 8.7E-06 49.1 13.0 102 28-157 128-237 (1134)
244 1y8m_A FIS1; mitochondria, unk 95.0 0.12 4.2E-06 39.1 8.1 86 9-96 22-110 (144)
245 4b4t_P 26S proteasome regulato 94.9 0.35 1.2E-05 43.6 12.5 101 65-185 139-247 (445)
246 3kae_A CDC27, possible protein 94.8 0.51 1.8E-05 37.1 11.4 118 24-158 30-149 (242)
247 1zbp_A Hypothetical protein VP 94.7 0.44 1.5E-05 40.0 11.7 58 36-95 6-63 (273)
248 3txn_A 26S proteasome regulato 94.1 1.2 4.2E-05 39.4 13.9 102 32-152 104-210 (394)
249 1ya0_A SMG-7 transcript varian 94.0 0.35 1.2E-05 44.3 10.4 76 67-168 156-232 (497)
250 3mkq_B Coatomer subunit alpha; 93.9 1.8 6.1E-05 33.9 13.2 99 4-148 16-114 (177)
251 4b4t_R RPN7, 26S proteasome re 93.8 0.16 5.5E-06 45.6 7.8 109 26-154 130-239 (429)
252 4b4t_R RPN7, 26S proteasome re 92.0 0.53 1.8E-05 42.1 8.4 97 66-185 134-237 (429)
253 4b4t_S RPN3, 26S proteasome re 91.3 0.33 1.1E-05 44.6 6.3 132 4-157 147-304 (523)
254 4b4t_P 26S proteasome regulato 90.4 6 0.00021 35.4 13.8 105 29-152 139-247 (445)
255 3uzd_A 14-3-3 protein gamma; s 90.2 6.9 0.00024 32.3 14.1 150 29-185 6-203 (248)
256 3kae_A CDC27, possible protein 90.1 5.7 0.0002 31.2 16.1 71 23-94 58-145 (242)
257 4fhn_B Nucleoporin NUP120; pro 88.0 2.5 8.6E-05 42.6 10.3 139 33-181 818-963 (1139)
258 2wpv_A GET4, UPF0363 protein Y 86.9 14 0.00046 31.6 16.9 110 32-147 38-158 (312)
259 2br9_A 14-3-3E, 14-3-3 protein 86.4 12 0.00039 30.6 11.6 151 28-185 6-202 (234)
260 1qsa_A Protein (soluble lytic 84.6 19 0.00064 33.8 13.7 58 127-185 290-348 (618)
261 3lpz_A GET4 (YOR164C homolog); 79.6 29 0.001 29.9 16.0 109 32-146 40-159 (336)
262 4fhn_B Nucleoporin NUP120; pro 76.8 32 0.0011 34.6 13.1 126 23-173 838-988 (1139)
263 3efz_A 14-3-3 protein; 14-3-3, 74.1 33 0.0011 28.5 10.3 47 139-185 168-226 (268)
264 3ax2_A Mitochondrial import re 73.5 12 0.00042 24.6 6.1 27 33-59 23-49 (73)
265 3ubw_A 14-3-3E, 14-3-3 protein 72.4 40 0.0014 27.9 15.9 152 27-185 31-228 (261)
266 2crb_A Nuclear receptor bindin 71.1 6.2 0.00021 27.3 4.3 28 124-151 16-43 (97)
267 3iqu_A 14-3-3 protein sigma; s 70.7 42 0.0014 27.3 15.1 151 28-185 9-205 (236)
268 4gq2_M Nucleoporin NUP120; bet 70.5 74 0.0025 31.3 13.8 115 33-157 816-932 (950)
269 1qsa_A Protein (soluble lytic 67.4 81 0.0028 29.4 18.1 163 9-181 268-438 (618)
270 4b4t_S RPN3, 26S proteasome re 67.3 24 0.00083 32.3 8.8 65 123-189 231-303 (523)
271 2o8p_A 14-3-3 domain containin 65.0 54 0.0018 26.5 15.1 144 32-184 11-196 (227)
272 2w2u_A Hypothetical P60 katani 64.2 9.9 0.00034 25.6 4.3 27 126-152 22-48 (83)
273 2crb_A Nuclear receptor bindin 63.6 7.8 0.00027 26.8 3.6 24 69-92 21-44 (97)
274 1om2_A Protein (mitochondrial 62.9 25 0.00086 24.3 6.2 27 33-59 26-52 (95)
275 3ax2_A Mitochondrial import re 62.2 13 0.00044 24.5 4.4 32 127-158 21-52 (73)
276 2v6y_A AAA family ATPase, P60 62.2 11 0.00038 25.3 4.3 25 127-151 15-39 (83)
277 1o9d_A 14-3-3-like protein C; 61.9 67 0.0023 26.5 15.0 152 27-185 8-207 (260)
278 4ady_A RPN2, 26S proteasome re 61.2 58 0.002 32.2 10.6 24 161-184 565-588 (963)
279 1wy6_A Hypothetical protein ST 60.3 46 0.0016 25.1 7.6 60 31-92 94-154 (172)
280 2npm_A 14-3-3 domain containin 58.5 77 0.0026 26.1 16.4 152 27-185 28-227 (260)
281 4a5x_A MITD1, MIT domain-conta 58.4 20 0.00067 24.2 5.1 21 72-92 25-45 (86)
282 4a5x_A MITD1, MIT domain-conta 55.2 21 0.00073 24.1 4.8 27 126-152 19-45 (86)
283 3t5x_A PCI domain-containing p 53.9 30 0.001 27.3 6.2 34 124-157 15-48 (203)
284 2v6x_A Vacuolar protein sortin 53.6 23 0.00079 23.6 4.8 27 126-152 16-42 (85)
285 1wfd_A Hypothetical protein 15 53.3 18 0.00063 24.7 4.3 28 125-152 17-44 (93)
286 2ijq_A Hypothetical protein; s 51.9 76 0.0026 24.1 8.0 62 31-92 36-104 (161)
287 2w2u_A Hypothetical P60 katani 51.4 31 0.0011 23.1 5.1 24 162-185 25-48 (83)
288 4gq2_M Nucleoporin NUP120; bet 49.8 60 0.002 32.0 8.9 67 119-185 836-926 (950)
289 3eab_A Spastin; spastin, MIT, 47.3 31 0.0011 23.5 4.5 16 192-207 60-75 (89)
290 3re2_A Predicted protein; meni 47.1 60 0.0021 28.4 7.2 62 123-184 255-324 (472)
291 2cpt_A SKD1 protein, vacuolar 46.9 28 0.00094 25.0 4.5 27 126-152 21-47 (117)
292 1om2_A Protein (mitochondrial 43.3 24 0.00082 24.4 3.5 32 127-158 24-55 (95)
293 3ph0_C ASCG; type III secretio 42.5 60 0.002 20.2 6.3 52 30-83 9-60 (61)
294 2dl1_A Spartin; SPG20, MIT, st 42.2 93 0.0032 22.3 7.3 14 193-206 67-80 (116)
295 2v6y_A AAA family ATPase, P60 41.6 28 0.00096 23.2 3.6 19 74-92 22-40 (83)
296 2rpa_A Katanin P60 ATPase-cont 41.0 24 0.00083 23.4 3.1 48 160-207 16-66 (78)
297 2wpv_A GET4, UPF0363 protein Y 40.4 1.7E+02 0.0057 24.7 13.3 57 124-180 93-158 (312)
298 3u84_A Menin; MLL, JUND, ledgf 39.8 86 0.0029 28.0 7.2 62 123-184 277-346 (550)
299 3t5v_B Nuclear mRNA export pro 39.7 43 0.0015 30.1 5.6 99 42-156 141-254 (455)
300 2rpa_A Katanin P60 ATPase-cont 39.0 31 0.0011 22.9 3.4 26 127-152 16-41 (78)
301 4ady_A RPN2, 26S proteasome re 38.6 2E+02 0.0069 28.4 10.4 24 127-150 564-587 (963)
302 4gq4_A Menin; tumor suppressor 38.2 96 0.0033 27.6 7.2 62 123-184 262-331 (489)
303 1wy6_A Hypothetical protein ST 37.4 1.3E+02 0.0045 22.6 15.1 138 34-185 14-154 (172)
304 3mkr_B Coatomer subunit alpha; 36.9 1.9E+02 0.0066 24.5 10.6 44 165-212 207-250 (320)
305 3t5x_A PCI domain-containing p 35.7 95 0.0032 24.3 6.5 34 27-60 14-47 (203)
306 3t5v_B Nuclear mRNA export pro 35.5 1.2E+02 0.0042 27.1 7.8 88 8-95 141-253 (455)
307 2ijq_A Hypothetical protein; s 34.3 1.5E+02 0.0051 22.4 7.1 58 127-184 36-103 (161)
308 3bu8_A Telomeric repeat-bindin 32.4 36 0.0012 27.4 3.3 40 130-169 121-161 (235)
309 2cpt_A SKD1 protein, vacuolar 32.3 73 0.0025 22.7 4.8 15 39-53 30-44 (117)
310 2cwy_A Hypothetical protein TT 30.9 1.3E+02 0.0043 20.5 6.5 58 33-92 7-68 (94)
311 3bqo_A Telomeric repeat-bindin 30.0 39 0.0013 26.8 3.1 21 164-184 125-145 (211)
312 4a1g_A Mitotic checkpoint seri 28.7 95 0.0033 23.3 5.1 32 123-154 101-132 (152)
313 4abx_A DNA repair protein RECN 28.0 1.6E+02 0.0053 22.3 6.4 39 21-59 84-122 (175)
314 3snx_A SUSD homolog, putative 27.7 26 0.00089 31.3 2.1 27 159-185 324-351 (460)
315 2cfu_A SDSA1; SDS-hydrolase, l 26.5 1E+02 0.0035 28.9 6.0 48 124-171 450-498 (658)
316 4a1g_A Mitotic checkpoint seri 26.2 2E+02 0.007 21.4 6.6 50 44-93 82-131 (152)
317 2wvi_A Mitotic checkpoint seri 25.7 1.3E+02 0.0045 22.8 5.5 50 44-93 77-126 (164)
318 1wfd_A Hypothetical protein 15 25.4 1E+02 0.0035 20.9 4.4 16 38-53 26-41 (93)
319 2cfu_A SDSA1; SDS-hydrolase, l 25.3 1E+02 0.0034 29.0 5.7 50 29-80 451-500 (658)
320 2cwy_A Hypothetical protein TT 24.7 1.6E+02 0.0055 19.9 5.3 55 128-184 6-67 (94)
321 3mv2_A Coatomer subunit alpha; 24.7 3.2E+02 0.011 23.2 11.8 45 165-213 216-260 (325)
322 3bu8_A Telomeric repeat-bindin 23.9 1.2E+02 0.004 24.4 4.9 20 38-57 125-144 (235)
323 2wvi_A Mitotic checkpoint seri 22.3 1.6E+02 0.0056 22.3 5.4 44 142-185 79-125 (164)
324 3lpz_A GET4 (YOR164C homolog); 22.2 3.7E+02 0.013 22.9 14.2 25 155-179 134-159 (336)
325 2vkj_A TM1634; membrane protei 22.0 1.1E+02 0.0038 20.9 3.8 30 123-152 53-82 (106)
326 3iqu_A 14-3-3 protein sigma; s 20.8 1.9E+02 0.0064 23.4 5.8 56 125-180 10-68 (236)
327 2dl1_A Spartin; SPG20, MIT, st 20.6 1.5E+02 0.005 21.2 4.4 26 126-151 25-50 (116)
328 2br9_A 14-3-3E, 14-3-3 protein 20.3 1.7E+02 0.0057 23.6 5.4 42 125-166 7-50 (234)
No 1
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.93 E-value=4.4e-24 Score=176.84 Aligned_cols=155 Identities=20% Similarity=0.151 Sum_probs=144.8
Q ss_pred chhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHc-----
Q 024858 2 VQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKC----- 76 (261)
Q Consensus 2 ~~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~----- 76 (261)
+.+..|++++|+..|+++++.+|+++.++.++|.++.++|++++|+..++++++++|+++ .....+|.+|...
T Consensus 14 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~--~a~~~lg~~~~~~~~~~~ 91 (217)
T 2pl2_A 14 QLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYL--GGYMVLSEAYVALYRQAE 91 (217)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHHHTCS
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH--HHHHHHHHHHHHhhhhhh
Confidence 356789999999999999999999999999999999999999999999999999999953 4566799999999
Q ss_pred ------CCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 024858 77 ------GKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQ 150 (261)
Q Consensus 77 ------g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al 150 (261)
|++++|+..|++++++. |+++.++.++|.+|..+|++++|+..|++++
T Consensus 92 ~~~~~~g~~~~A~~~~~~al~~~--------------------------P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 145 (217)
T 2pl2_A 92 DRERGKGYLEQALSVLKDAERVN--------------------------PRYAPLHLQRGLVYALLGERDKAEASLKQAL 145 (217)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhcccccCHHHHHHHHHHHHHhC--------------------------cccHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 99999999999999974 4678899999999999999999999999999
Q ss_pred hhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 151 MIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 151 ~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
+++ +++. +.++|.+|..+|++++|+..|++++..
T Consensus 146 ~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 180 (217)
T 2pl2_A 146 ALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQ 180 (217)
T ss_dssp HHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999 8888 999999999999999999999999997
No 2
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.92 E-value=1.2e-23 Score=168.32 Aligned_cols=156 Identities=19% Similarity=0.171 Sum_probs=145.0
Q ss_pred chhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHH
Q 024858 2 VQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEE 81 (261)
Q Consensus 2 ~~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~e 81 (261)
+....|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..+++++...|+++ .....+|.++...+++++
T Consensus 14 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 91 (184)
T 3vtx_A 14 KKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSA--EAYYILGSANFMIDEKQA 91 (184)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhH--HHHHHHHHHHHHcCCHHH
Confidence 346789999999999999999999999999999999999999999999999999999853 355668999999999999
Q ss_pred HHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hh
Q 024858 82 QIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-AC 160 (261)
Q Consensus 82 A~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~ 160 (261)
|+..+++++++. |+++.++..+|.+|..+|++++|+..|+++++++|+++. +.
T Consensus 92 a~~~~~~a~~~~--------------------------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 145 (184)
T 3vtx_A 92 AIDALQRAIALN--------------------------TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQ 145 (184)
T ss_dssp HHHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHhC--------------------------ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHH
Confidence 999999998874 457789999999999999999999999999999999999 99
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 161 NLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 161 ~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
++|.+|..+|++++|+..|++++..
T Consensus 146 ~lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 146 SIGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 9999999999999999999999997
No 3
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.91 E-value=1.6e-23 Score=202.41 Aligned_cols=156 Identities=19% Similarity=0.233 Sum_probs=146.5
Q ss_pred chhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHH
Q 024858 2 VQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEE 81 (261)
Q Consensus 2 ~~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~e 81 (261)
+....|++++|+.+|++|++++|+++.++.+||.+|.++|++++|++.|+++++++|+++ ..++.||.+|.++|++++
T Consensus 18 ~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~--~a~~nLg~~l~~~g~~~~ 95 (723)
T 4gyw_A 18 IKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFA--DAYSNMGNTLKEMQDVQG 95 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHH
Confidence 456789999999999999999999999999999999999999999999999999999953 456679999999999999
Q ss_pred HHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hh
Q 024858 82 QIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-AC 160 (261)
Q Consensus 82 A~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~ 160 (261)
|++.|+++++++ |++++++.+||.+|..+|++++|+..|++|++++|++.. +.
T Consensus 96 A~~~~~kAl~l~--------------------------P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~ 149 (723)
T 4gyw_A 96 ALQCYTRAIQIN--------------------------PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYC 149 (723)
T ss_dssp HHHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHH
T ss_pred HHHHHHHHHHhC--------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHh
Confidence 999999999974 467889999999999999999999999999999999999 99
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 161 NLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 161 ~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
+||.+|..+|++++|++.|++++..
T Consensus 150 ~L~~~l~~~g~~~~A~~~~~kal~l 174 (723)
T 4gyw_A 150 NLAHCLQIVCDWTDYDERMKKLVSI 174 (723)
T ss_dssp HHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred hhhhHHHhcccHHHHHHHHHHHHHh
Confidence 9999999999999999999999875
No 4
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.90 E-value=3.1e-23 Score=171.67 Aligned_cols=154 Identities=18% Similarity=0.093 Sum_probs=128.7
Q ss_pred chhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHc-----------CCcHHHHHHHHHHHhcCCchhHHHHHHHHH
Q 024858 2 VQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQL-----------DRSEEAIEAIKSFRGLCSKQSQESLDNVLI 70 (261)
Q Consensus 2 ~~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~-----------g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~ 70 (261)
+....|++++|+..|+++++.+|+++.++.++|.++..+ |++++|+..++++++++|+++ .....+|
T Consensus 48 ~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~--~~~~~lg 125 (217)
T 2pl2_A 48 TQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYA--PLHLQRG 125 (217)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCH--HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccH--HHHHHHH
Confidence 356789999999999999999999999999999999999 999999999999999999953 4566799
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 024858 71 DLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQ 150 (261)
Q Consensus 71 ~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al 150 (261)
.+|...|++++|+..|++++++. +++.++.++|.+|..+|++++|+..|++++
T Consensus 126 ~~~~~~g~~~~A~~~~~~al~~~---------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al 178 (217)
T 2pl2_A 126 LVYALLGERDKAEASLKQALALE---------------------------DTPEIRSALAELYLSMGRLDEALAQYAKAL 178 (217)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC---------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHcCChHHHHHHHHHHHhcc---------------------------cchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999999999972 256789999999999999999999999999
Q ss_pred hhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHh
Q 024858 151 MIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLY 184 (261)
Q Consensus 151 ~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~ 184 (261)
+++|+++. +.++|.++..+|++++|+..|+++-.
T Consensus 179 ~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 179 EQAPKDLDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp HHSTTCHHHHHHHHHHHTC----------------
T ss_pred HhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 99999999 99999999999999999999988654
No 5
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.89 E-value=8e-22 Score=163.02 Aligned_cols=178 Identities=11% Similarity=0.070 Sum_probs=150.8
Q ss_pred chhhcCCHHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHH
Q 024858 2 VQLVQKDPEAAIVLFWKAINAGD-RVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVE 80 (261)
Q Consensus 2 ~~~~~~~~~~A~~~~~~al~~~p-~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~ 80 (261)
+.+..|++++|+..|.+++..+| .+..++.++|.++..+|++++|+..+++++..+|++ ......+|.+|...|+++
T Consensus 16 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~~ 93 (228)
T 4i17_A 16 DALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNL--ANAYIGKSAAYRDMKNNQ 93 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSH--HHHHHHHHHHHHHTTCHH
T ss_pred HHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcch--HHHHHHHHHHHHHcccHH
Confidence 35678999999999999999998 888999999999999999999999999999999994 446667999999999999
Q ss_pred HHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--chh
Q 024858 81 EQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPD--ANK 158 (261)
Q Consensus 81 eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~--~~~ 158 (261)
+|+..|++++++.|....+. +....++.++|.++..+|++++|+..|+++++++|+ +..
T Consensus 94 ~A~~~~~~al~~~p~~~~~~-------------------~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 154 (228)
T 4i17_A 94 EYIATLTEGIKAVPGNATIE-------------------KLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTD 154 (228)
T ss_dssp HHHHHHHHHHHHSTTCHHHH-------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHH
T ss_pred HHHHHHHHHHHHCCCcHHHH-------------------HHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHH
Confidence 99999999999865211000 001257999999999999999999999999999999 888
Q ss_pred -hhhHHHHHHHcCCH---------------------------HHHHHHHHHHHhCCCCCCcchhhHHHHHHHHHHHH
Q 024858 159 -ACNLGLCLIKRTRY---------------------------NEARSVLEDVLYGRIPGCEDGRTRKRAEELLLELE 207 (261)
Q Consensus 159 -~~~L~~~l~~~g~~---------------------------~eA~~~~~~~l~~~~~~~~~~~~~~~a~~~l~~l~ 207 (261)
+.++|.++..+|+. ++|+.+|++++.. +|.+.. +..++..+.
T Consensus 155 ~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l---~p~~~~----~~~~l~~i~ 224 (228)
T 4i17_A 155 ALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTL---SPNRTE----IKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CTTCHH----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc---CCCCHH----HHHHHHHHH
Confidence 99999999999998 8899999999997 444433 555555543
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.89 E-value=7.1e-22 Score=175.52 Aligned_cols=179 Identities=16% Similarity=0.115 Sum_probs=89.1
Q ss_pred hhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHH
Q 024858 4 LVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQI 83 (261)
Q Consensus 4 ~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~ 83 (261)
...|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++.+|+.. .....+|.+|...|++++|+
T Consensus 78 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~l~~~~~~~g~~~~A~ 155 (388)
T 1w3b_A 78 KERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLY--CVRSDLGNLLKALGRLEEAK 155 (388)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCT--HHHHHHHHHHHTTSCHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH--HHHHHHHHHHHHccCHHHHH
Confidence 3455666666666666666666666666666666666666666666666666666532 23344566666666666666
Q ss_pred HHHHHHHHhhcchh-hhcCcchHHHhhchh------hhh--hhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 024858 84 EMLKRKLRLIYQGE-AFNGKPTKTARSHGK------KFQ--VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDP 154 (261)
Q Consensus 84 ~~~~~al~l~~~~~-~~~~~~~~~~~~~~~------~~~--~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P 154 (261)
+.|+++++..|... ++.. ........+. .+. +.+.|++..++.++|.++...|++++|+..|++++.++|
T Consensus 156 ~~~~~al~~~p~~~~~~~~-l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 234 (388)
T 1w3b_A 156 ACYLKAIETQPNFAVAWSN-LGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP 234 (388)
T ss_dssp HHHHHHHHHCTTCHHHHHH-HHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT
T ss_pred HHHHHHHHhCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 66666666543211 1100 0000000000 011 234444444455555555555555555555555555555
Q ss_pred Cchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 155 DANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 155 ~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
++.. +.++|.++..+|++++|+..|++++..
T Consensus 235 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 266 (388)
T 1w3b_A 235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL 266 (388)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4444 444555555555555555555555444
No 7
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.88 E-value=3.9e-21 Score=169.19 Aligned_cols=182 Identities=16% Similarity=0.137 Sum_probs=153.6
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHH
Q 024858 3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ 82 (261)
Q Consensus 3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA 82 (261)
.+..|++++|+.+|++++..+|+++.++..+|.++..+|++++|+..+++++.++|+++ .....+|.+|...|++++|
T Consensus 75 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~l~~~~~~~g~~~~A 152 (365)
T 4eqf_A 75 RLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNL--KALMALAVSYTNTSHQQDA 152 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHccccHHHH
Confidence 45689999999999999999999999999999999999999999999999999999853 4566799999999999999
Q ss_pred HHHHHHHHHhhcchh-hhcCc---------chHHHhhchh------hhh--hhcCCC--cHHHHHHHHHHHHHcCCHHHH
Q 024858 83 IEMLKRKLRLIYQGE-AFNGK---------PTKTARSHGK------KFQ--VSVRQE--TSRLLGNLAWAYMQKTNFMAA 142 (261)
Q Consensus 83 ~~~~~~al~l~~~~~-~~~~~---------~~~~~~~~~~------~~~--~~l~p~--~~~~~~~Lg~~~~~~g~~~eA 142 (261)
+..|++++++.|... ..... ........+. .+. +.+.|+ ++.++.++|.+|..+|++++|
T Consensus 153 ~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A 232 (365)
T 4eqf_A 153 CEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRA 232 (365)
T ss_dssp HHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHH
Confidence 999999999866432 11100 0001111111 111 577898 899999999999999999999
Q ss_pred HHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhCC
Q 024858 143 EVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGR 186 (261)
Q Consensus 143 ~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~ 186 (261)
+..|+++++++|+++. +.++|.++..+|++++|+..|++++...
T Consensus 233 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 277 (365)
T 4eqf_A 233 IDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ 277 (365)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 9999999999999999 9999999999999999999999999973
No 8
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.88 E-value=1.9e-21 Score=172.70 Aligned_cols=230 Identities=17% Similarity=0.105 Sum_probs=125.7
Q ss_pred hhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHH
Q 024858 4 LVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQI 83 (261)
Q Consensus 4 ~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~ 83 (261)
+..|++++|+..|.+++..+|+++.++..+|.++.+.|++++|+..++.+++.+|.++ ..+..+|.+|.+.|++++|+
T Consensus 10 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~--~~~~~lg~~~~~~g~~~~A~ 87 (388)
T 1w3b_A 10 YQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLA--EAYSNLGNVYKERGQLQEAI 87 (388)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHTCHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCch--HHHHHHHHHHHHCCCHHHHH
Confidence 3456666666666666666666665665666666666666666666666655555532 23444555556666666666
Q ss_pred HHHHHHHHhhcchh-hhc---------Ccch------------------------HHHhhchh------hhh--hhcCCC
Q 024858 84 EMLKRKLRLIYQGE-AFN---------GKPT------------------------KTARSHGK------KFQ--VSVRQE 121 (261)
Q Consensus 84 ~~~~~al~l~~~~~-~~~---------~~~~------------------------~~~~~~~~------~~~--~~l~p~ 121 (261)
..|++++++.|... ++. |... ......++ .+. +.+.|+
T Consensus 88 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 167 (388)
T 1w3b_A 88 EHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPN 167 (388)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 66666555543221 110 0000 00000000 011 355677
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhCCCCCCc---------
Q 024858 122 TSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCE--------- 191 (261)
Q Consensus 122 ~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~~~~~~--------- 191 (261)
++.++.++|.+|..+|++++|+..|+++++++|++.. +.++|.++...|++++|+..|++++..++..+.
T Consensus 168 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 247 (388)
T 1w3b_A 168 FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVY 247 (388)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHH
Confidence 7777777777777777777777777777777777776 677777777777777777777777765321110
Q ss_pred -chhhHHHHHHHHHHHHhcCC-CCchhhhcccch-----hHHHHHHHHHHH
Q 024858 192 -DGRTRKRAEELLLELESKQP-PPDLSDLLGLNL-----EDEFVNGLEEMV 235 (261)
Q Consensus 192 -~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~~~~-----~d~~~~~~~~~l 235 (261)
..+.++.|.+.+.......| .+.+...+|..+ +++..+.|+..+
T Consensus 248 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 298 (388)
T 1w3b_A 248 YEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTAL 298 (388)
T ss_dssp HHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 13444556666655443333 344444444443 355555555544
No 9
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.88 E-value=7.1e-22 Score=177.84 Aligned_cols=156 Identities=12% Similarity=0.004 Sum_probs=142.3
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCC-cHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHH
Q 024858 3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDR-SEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEE 81 (261)
Q Consensus 3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~-~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~e 81 (261)
....|++++|+..|+++|.++|++..+|+++|.++..+|+ +++|+..+++++.++|+++ .+++.+|.+|...|++++
T Consensus 107 ~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~--~a~~~~g~~~~~~g~~~e 184 (382)
T 2h6f_A 107 LQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNY--QVWHHRRVLVEWLRDPSQ 184 (382)
T ss_dssp HHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHTCCTT
T ss_pred HHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHccCHHH
Confidence 3456899999999999999999999999999999999997 9999999999999999953 456668999999999999
Q ss_pred HHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hh
Q 024858 82 QIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-AC 160 (261)
Q Consensus 82 A~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~ 160 (261)
|+..|+++|+++ |++..+|.++|+++..+|++++|+..|+++++++|++.. |+
T Consensus 185 Al~~~~kal~ld--------------------------P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~ 238 (382)
T 2h6f_A 185 ELEFIADILNQD--------------------------AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWN 238 (382)
T ss_dssp HHHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHhC--------------------------ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHH
Confidence 999999999974 467889999999999999999999999999999999999 99
Q ss_pred hHHHHHHH-cCCHHHH-----HHHHHHHHhCC
Q 024858 161 NLGLCLIK-RTRYNEA-----RSVLEDVLYGR 186 (261)
Q Consensus 161 ~L~~~l~~-~g~~~eA-----~~~~~~~l~~~ 186 (261)
++|.+|.. .|++++| +..|++++..+
T Consensus 239 ~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~ 270 (382)
T 2h6f_A 239 QRYFVISNTTGYNDRAVLEREVQYTLEMIKLV 270 (382)
T ss_dssp HHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC
Confidence 99999999 5665888 59999999973
No 10
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.87 E-value=2.6e-21 Score=187.03 Aligned_cols=137 Identities=16% Similarity=0.191 Sum_probs=128.0
Q ss_pred cCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcC
Q 024858 22 AGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNG 101 (261)
Q Consensus 22 ~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~ 101 (261)
..|++++++++||.++.++|++++|++.|+++++++|+++ ..++.||.+|.++|++++|++.|+++++++
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~--~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-------- 73 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFA--AAHSNLASVLQQQGKLQEALMHYKEAIRIS-------- 73 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------
Confidence 4699999999999999999999999999999999999953 456679999999999999999999999974
Q ss_pred cchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHH
Q 024858 102 KPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLE 180 (261)
Q Consensus 102 ~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~ 180 (261)
|++++++.|||.+|..+|++++|++.|++|++++|++.. +.+||.+|..+|++++|+..|+
T Consensus 74 ------------------P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~ 135 (723)
T 4gyw_A 74 ------------------PTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYR 135 (723)
T ss_dssp ------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 567899999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHhCC
Q 024858 181 DVLYGR 186 (261)
Q Consensus 181 ~~l~~~ 186 (261)
+++..+
T Consensus 136 ~Al~l~ 141 (723)
T 4gyw_A 136 TALKLK 141 (723)
T ss_dssp HHHHHC
T ss_pred HHHHhC
Confidence 999983
No 11
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.87 E-value=2.3e-21 Score=159.35 Aligned_cols=155 Identities=16% Similarity=0.118 Sum_probs=134.8
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCChHHHHHH----------------HHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHH
Q 024858 3 QLVQKDPEAAIVLFWKAINAGDRVDSALKD----------------MAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLD 66 (261)
Q Consensus 3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~----------------Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~ 66 (261)
.+..|++++|+.+|++++..+|+++.++.. +|.++..+|++++|+..|+++++++|+++ ...
T Consensus 14 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~ 91 (208)
T 3urz_A 14 AIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNV--DCL 91 (208)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH--HHH
Confidence 467899999999999999999999999999 99999999999999999999999999953 456
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCC--HHHHHH
Q 024858 67 NVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTN--FMAAEV 144 (261)
Q Consensus 67 ~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~--~~eA~~ 144 (261)
..+|.+|...|++++|+..|++++++. |+++.++.++|.+|..+|+ ..++..
T Consensus 92 ~~lg~~~~~~g~~~~A~~~~~~al~~~--------------------------P~~~~a~~~lg~~~~~~~~~~~~~~~~ 145 (208)
T 3urz_A 92 EACAEMQVCRGQEKDALRMYEKILQLE--------------------------ADNLAANIFLGNYYYLTAEQEKKKLET 145 (208)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC--------------------------CCCHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 679999999999999999999999974 5678899999999977754 566788
Q ss_pred HHHHHHhhCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 145 VYQKAQMIDPDANKACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 145 ~~~~al~~~P~~~~~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
.|++++..+|....++++|.++...|++++|+..|++++..
T Consensus 146 ~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 146 DYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 88888754443333788999999999999999999999998
No 12
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.86 E-value=1.2e-21 Score=153.22 Aligned_cols=142 Identities=12% Similarity=0.022 Sum_probs=117.0
Q ss_pred chhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHH
Q 024858 2 VQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEE 81 (261)
Q Consensus 2 ~~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~e 81 (261)
+....|++++|+..|++++..+|+.+.+++.+|.+|.++|++++|+..|+++++++|+++ ..+..+|.+|...|++++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~--~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDP--KAHRFLGLLYELEENTDK 83 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHH
T ss_pred HHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCchHH
Confidence 345567888899999999888888888888899999999999999999999999988853 456668888999999999
Q ss_pred HHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHH-HHHHHhhCCCchh-h
Q 024858 82 QIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVV-YQKAQMIDPDANK-A 159 (261)
Q Consensus 82 A~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~-~~~al~~~P~~~~-~ 159 (261)
|+..|+++++++ |++++++.++|.+|..+|++++|... +++|++++|+++. +
T Consensus 84 A~~~~~~al~~~--------------------------p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~ 137 (150)
T 4ga2_A 84 AVECYRRSVELN--------------------------PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVY 137 (150)
T ss_dssp HHHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHHHHHHHhC--------------------------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHH
Confidence 999999988874 46778888999999999988877765 4889999998888 6
Q ss_pred hhHHHHHHHcCC
Q 024858 160 CNLGLCLIKRTR 171 (261)
Q Consensus 160 ~~L~~~l~~~g~ 171 (261)
...+.++..+|+
T Consensus 138 ~l~~~ll~~~G~ 149 (150)
T 4ga2_A 138 KLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHTCCC
T ss_pred HHHHHHHHHhCc
Confidence 667888877775
No 13
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.86 E-value=1.2e-19 Score=159.06 Aligned_cols=181 Identities=16% Similarity=0.118 Sum_probs=154.5
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHH
Q 024858 3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ 82 (261)
Q Consensus 3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA 82 (261)
.+..|++++|+.+|++++..+|+++.++..+|.++...|++++|+..+++++.++|+++ .....+|.+|...|++++|
T Consensus 74 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~l~~~~~~~g~~~~A 151 (368)
T 1fch_A 74 RLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQ--TALMALAVSFTNESLQRQA 151 (368)
T ss_dssp HHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHcCCHHHH
Confidence 45689999999999999999999999999999999999999999999999999999853 4566799999999999999
Q ss_pred HHHHHHHHHhhcchhhhcC----------------cchHHHhhchh------hhh--hhcCCC--cHHHHHHHHHHHHHc
Q 024858 83 IEMLKRKLRLIYQGEAFNG----------------KPTKTARSHGK------KFQ--VSVRQE--TSRLLGNLAWAYMQK 136 (261)
Q Consensus 83 ~~~~~~al~l~~~~~~~~~----------------~~~~~~~~~~~------~~~--~~l~p~--~~~~~~~Lg~~~~~~ 136 (261)
+..|++++++.|....... ...... ..+. .+. +.+.|+ .+.++.++|.+|..+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~ 230 (368)
T 1fch_A 152 CEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLS 230 (368)
T ss_dssp HHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHc
Confidence 9999999998764321110 011111 1111 111 577888 899999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhCC
Q 024858 137 TNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGR 186 (261)
Q Consensus 137 g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~ 186 (261)
|++++|+..|++++.++|+++. +.++|.++...|++++|+..|++++...
T Consensus 231 g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 281 (368)
T 1fch_A 231 GEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ 281 (368)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999998 9999999999999999999999999973
No 14
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.86 E-value=8.9e-21 Score=174.88 Aligned_cols=176 Identities=15% Similarity=0.052 Sum_probs=119.6
Q ss_pred CCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCc-HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHH
Q 024858 7 KDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRS-EEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEM 85 (261)
Q Consensus 7 ~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~-~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~ 85 (261)
+.+++++..+..+...+|..+.++..+|.++...|++ ++|+..|+++++++|+++ ..++.+|.+|...|++++|+..
T Consensus 82 ~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~--~a~~~lg~~~~~~g~~~~A~~~ 159 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELV--EAWNQLGEVYWKKGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCH--HHHHHHHHHHHHcCCHHHHHHH
Confidence 3455566666665566666666666666666666666 666666666666666532 2344466666666666666666
Q ss_pred HHHHHHhhcchhhhcCcchHHHhhc---------hh------hhh--hhcCCCcHHHHHHHHHHHHHc--------CCHH
Q 024858 86 LKRKLRLIYQGEAFNGKPTKTARSH---------GK------KFQ--VSVRQETSRLLGNLAWAYMQK--------TNFM 140 (261)
Q Consensus 86 ~~~al~l~~~~~~~~~~~~~~~~~~---------~~------~~~--~~l~p~~~~~~~~Lg~~~~~~--------g~~~ 140 (261)
|++++++.|...++.+ ........ +. .+. +.+.|+++.++.+||.+|..+ |+++
T Consensus 160 ~~~al~~~p~~~~~~~-lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 160 FSGALTHCKNKVSLQN-LSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHHHTTCCCHHHHHH-HHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHhhCCCHHHHHH-HHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 6666665543211110 00000000 00 111 455678899999999999999 9999
Q ss_pred HHHHHHHHHHhhCC---Cchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 141 AAEVVYQKAQMIDP---DANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 141 eA~~~~~~al~~~P---~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
+|+..|+++++++| +++. ++++|.+|..+|++++|+..|++++..
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 287 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL 287 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999 8888 999999999999999999999999998
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.86 E-value=1.3e-19 Score=157.15 Aligned_cols=181 Identities=15% Similarity=0.060 Sum_probs=145.9
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHH
Q 024858 3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ 82 (261)
Q Consensus 3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA 82 (261)
.+..|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++..+|++. .....+|.+|...|++++|
T Consensus 13 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A 90 (359)
T 3ieg_A 13 LLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFT--AARLQRGHLLLKQGKLDEA 90 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcc--hHHHHHHHHHHHcCChHHH
Confidence 46789999999999999999999999999999999999999999999999999999843 4566789999999999999
Q ss_pred HHHHHHHHHhhc---chh-hhcCc--c---------hHHHhhchh------hhh--hhcCCCcHHHHHHHHHHHHHcCCH
Q 024858 83 IEMLKRKLRLIY---QGE-AFNGK--P---------TKTARSHGK------KFQ--VSVRQETSRLLGNLAWAYMQKTNF 139 (261)
Q Consensus 83 ~~~~~~al~l~~---~~~-~~~~~--~---------~~~~~~~~~------~~~--~~l~p~~~~~~~~Lg~~~~~~g~~ 139 (261)
+..|++++++.| ... .+... . .......+. .+. +.+.|+++.++.++|.++..+|++
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (359)
T 3ieg_A 91 EDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEP 170 (359)
T ss_dssp HHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCH
Confidence 999999999866 321 11100 0 000001110 111 467788888889999999999999
Q ss_pred HHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 140 MAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 140 ~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
++|+..|++++..+|+++. +.++|.++...|++++|+..+++++..
T Consensus 171 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 217 (359)
T 3ieg_A 171 RKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL 217 (359)
T ss_dssp HHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999999999998888 888899999999999999999888886
No 16
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.85 E-value=5.8e-20 Score=152.58 Aligned_cols=178 Identities=17% Similarity=0.129 Sum_probs=151.4
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchh--H---HHHHHHHHHHHHHcC
Q 024858 3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQS--Q---ESLDNVLIDLYKKCG 77 (261)
Q Consensus 3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~--~---~~~~~~L~~ly~~~g 77 (261)
.+..|++++|+.+|.+++..+ .++.++..+|.++...|++++|+..+++++...|+.. . ......+|.+|...|
T Consensus 15 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 93 (258)
T 3uq3_A 15 FYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLG 93 (258)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcc
Confidence 467899999999999999998 8899999999999999999999999999999888631 1 345677999999999
Q ss_pred CHHHHHHHHHHHHHhhcchhhhc--CcchHHHhhchhhhh--hhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 024858 78 KVEEQIEMLKRKLRLIYQGEAFN--GKPTKTARSHGKKFQ--VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMID 153 (261)
Q Consensus 78 ~~~eA~~~~~~al~l~~~~~~~~--~~~~~~~~~~~~~~~--~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~ 153 (261)
++++|+..|++++++.+.+..+. +..... ...+. +.+.|+.+.++.++|.++..+|++++|+..|++++..+
T Consensus 94 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 169 (258)
T 3uq3_A 94 DLKKTIEYYQKSLTEHRTADILTKLRNAEKE----LKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA 169 (258)
T ss_dssp CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----HHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHhcCchhHHHHHHhHHHHH----HHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 99999999999999866443322 111000 01111 45778889999999999999999999999999999999
Q ss_pred CCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 154 PDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 154 P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
|+++. +.++|.++...|++++|+..+++++..
T Consensus 170 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 202 (258)
T 3uq3_A 170 PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK 202 (258)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 99998 999999999999999999999999997
No 17
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.85 E-value=1.9e-19 Score=146.39 Aligned_cols=157 Identities=11% Similarity=0.040 Sum_probs=142.6
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHc-CCHHH
Q 024858 3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKC-GKVEE 81 (261)
Q Consensus 3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~-g~~~e 81 (261)
.+..|++++|+.+|++++..+|+.+.++..+|.++...|++++|+..+++++..+|++. .....+|.+|... |++++
T Consensus 18 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~l~~~~~~~~~~~~~ 95 (225)
T 2vq2_A 18 YMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSA--EINNNYGWFLCGRLNRPAE 95 (225)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHTTTCCHHH
T ss_pred HHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh--HHHHHHHHHHHHhcCcHHH
Confidence 45689999999999999999999999999999999999999999999999999999853 3556689999999 99999
Q ss_pred HHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hh
Q 024858 82 QIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-AC 160 (261)
Q Consensus 82 A~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~ 160 (261)
|+..++++++ .+ ..|+...++.++|.++..+|++++|+..|+++++.+|++.. +.
T Consensus 96 A~~~~~~~~~-~~-----------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 151 (225)
T 2vq2_A 96 SMAYFDKALA-DP-----------------------TYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFK 151 (225)
T ss_dssp HHHHHHHHHT-ST-----------------------TCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred HHHHHHHHHc-Cc-----------------------CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHH
Confidence 9999999988 22 01345678999999999999999999999999999999998 89
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 161 NLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 161 ~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
.+|.++...|++++|+.++++++..
T Consensus 152 ~la~~~~~~~~~~~A~~~~~~~~~~ 176 (225)
T 2vq2_A 152 ELARTKMLAGQLGDADYYFKKYQSR 176 (225)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999987
No 18
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.85 E-value=7.8e-20 Score=154.38 Aligned_cols=174 Identities=18% Similarity=0.098 Sum_probs=143.6
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCCh---HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchh-HHHHHHHHHHHHHH---
Q 024858 3 QLVQKDPEAAIVLFWKAINAGDRV---DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQS-QESLDNVLIDLYKK--- 75 (261)
Q Consensus 3 ~~~~~~~~~A~~~~~~al~~~p~~---~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~-~~~~~~~L~~ly~~--- 75 (261)
.+..|++++|+..|++++...|++ +.++..+|.++..+|++++|+..|++++..+|++. .......+|.+|..
T Consensus 25 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~ 104 (261)
T 3qky_A 25 FYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSP 104 (261)
T ss_dssp HHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCC
T ss_pred HHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcc
Confidence 467899999999999999999988 99999999999999999999999999999999632 23456679999999
Q ss_pred -----cCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 024858 76 -----CGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQ 150 (261)
Q Consensus 76 -----~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al 150 (261)
.|++++|+..|+++++..|....... . .. ....+.+.....+.++|.+|..+|++++|+..|++++
T Consensus 105 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~-----a--~~--~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 175 (261)
T 3qky_A 105 PYELDQTDTRKAIEAFQLFIDRYPNHELVDD-----A--TQ--KIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVF 175 (261)
T ss_dssp CTTSCCHHHHHHHHHHHHHHHHCTTCTTHHH-----H--HH--HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cccccchhHHHHHHHHHHHHHHCcCchhHHH-----H--HH--HHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 99999999999999998653211000 0 00 0011122334567999999999999999999999999
Q ss_pred hhCCCc---hh-hhhHHHHHHHc----------CCHHHHHHHHHHHHhC
Q 024858 151 MIDPDA---NK-ACNLGLCLIKR----------TRYNEARSVLEDVLYG 185 (261)
Q Consensus 151 ~~~P~~---~~-~~~L~~~l~~~----------g~~~eA~~~~~~~l~~ 185 (261)
+..|++ .. ++.+|.+|..+ |++++|+..|++++..
T Consensus 176 ~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 176 DAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 999985 45 78999999977 9999999999999997
No 19
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.85 E-value=1.4e-20 Score=165.71 Aligned_cols=182 Identities=21% Similarity=0.175 Sum_probs=145.7
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHH--------HHHHHHHHHH
Q 024858 3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQES--------LDNVLIDLYK 74 (261)
Q Consensus 3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~--------~~~~L~~ly~ 74 (261)
....|++++|+..|++++..+|+++.++..+|.++..+|++++|+..+++++++.|++.... +...++.+|.
T Consensus 109 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~ 188 (365)
T 4eqf_A 109 QAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPV 188 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------
T ss_pred HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHh
Confidence 45679999999999999999999999999999999999999999999999999999742111 1123588999
Q ss_pred HcCCHHHHHHHHHHHHHhhcc--hh-hhcCcchHHHhhchh------hhh--hhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 024858 75 KCGKVEEQIEMLKRKLRLIYQ--GE-AFNGKPTKTARSHGK------KFQ--VSVRQETSRLLGNLAWAYMQKTNFMAAE 143 (261)
Q Consensus 75 ~~g~~~eA~~~~~~al~l~~~--~~-~~~~~~~~~~~~~~~------~~~--~~l~p~~~~~~~~Lg~~~~~~g~~~eA~ 143 (261)
..|++++|+..|++++++.|. .. .+.. ........+. .+. +.+.|+++.++.++|.+|..+|++++|+
T Consensus 189 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 267 (365)
T 4eqf_A 189 DSSVLEGVKELYLEAAHQNGDMIDPDLQTG-LGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAV 267 (365)
T ss_dssp CCHHHHHHHHHHHHHHHHSCSSCCHHHHHH-HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhhhHHHHHHHHHHHHHhCcCccCHHHHHH-HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999998764 21 1111 0011111111 121 5778999999999999999999999999
Q ss_pred HHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 144 VVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 144 ~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
..|+++++++|++.. +.++|.+|..+|++++|+.+|++++..
T Consensus 268 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 310 (365)
T 4eqf_A 268 EAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSL 310 (365)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 999999999999998 999999999999999999999999996
No 20
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.85 E-value=1e-19 Score=150.20 Aligned_cols=180 Identities=15% Similarity=0.085 Sum_probs=124.2
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHH
Q 024858 3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ 82 (261)
Q Consensus 3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA 82 (261)
.+..|++++|+.+|++++..+|.++.++..+|.++...|++++|+..+++++..+|++ ......++.+|...|++++|
T Consensus 33 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~~~~~~~~~A 110 (243)
T 2q7f_A 33 GSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSA--ATAYYGAGNVYVVKEMYKEA 110 (243)
T ss_dssp ---------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc--hHHHHHHHHHHHHhccHHHH
Confidence 4668999999999999999999999999999999999999999999999999999984 34566689999999999999
Q ss_pred HHHHHHHHHhhcchh-hhcCcchHHHhhch------hhhh--hhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 024858 83 IEMLKRKLRLIYQGE-AFNGKPTKTARSHG------KKFQ--VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMID 153 (261)
Q Consensus 83 ~~~~~~al~l~~~~~-~~~~~~~~~~~~~~------~~~~--~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~ 153 (261)
+..|++++++.|... .+.. ........+ ..+. +.+.|+++.++.++|.+|...|++++|+..|++++..+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~-~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 189 (243)
T 2q7f_A 111 KDMFEKALRAGMENGDLFYM-LGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQD 189 (243)
T ss_dssp HHHHHHHHHHTCCSHHHHHH-HHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCCCHHHHHH-HHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999999865321 1100 000000000 0011 34556666666777777777777777777777777777
Q ss_pred CCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 154 PDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 154 P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
|++.. +..+|.++..+|++++|+..|++++..
T Consensus 190 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 190 PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 76666 666777777777777777777776665
No 21
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.85 E-value=2.6e-19 Score=149.18 Aligned_cols=157 Identities=20% Similarity=0.158 Sum_probs=138.8
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHH
Q 024858 3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ 82 (261)
Q Consensus 3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA 82 (261)
.+..|++++|+.+|++++..+|..+.++..+|.++...|++++|+..+++++..+|++ ......++.+|...|++++|
T Consensus 47 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~la~~~~~~g~~~~A 124 (252)
T 2ho1_A 47 YLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRN--ARVLNNYGGFLYEQKRYEEA 124 (252)
T ss_dssp HHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc--HHHHHHHHHHHHHHhHHHHH
Confidence 4567999999999999999999999999999999999999999999999999999984 34566789999999999999
Q ss_pred HHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhh
Q 024858 83 IEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACN 161 (261)
Q Consensus 83 ~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~ 161 (261)
+..|+++++. + ..|+.+.++.++|.+|..+|++++|+..|+++++.+|++.. +..
T Consensus 125 ~~~~~~~~~~-~-----------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 180 (252)
T 2ho1_A 125 YQRLLEASQD-T-----------------------LYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALE 180 (252)
T ss_dssp HHHHHHHTTC-T-----------------------TCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHH
T ss_pred HHHHHHHHhC-c-----------------------cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHH
Confidence 9999998871 1 12345678889999999999999999999999999999888 889
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 162 LGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 162 L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
+|.++..+|++++|+.++++++..
T Consensus 181 la~~~~~~g~~~~A~~~~~~~~~~ 204 (252)
T 2ho1_A 181 MADLLYKEREYVPARQYYDLFAQG 204 (252)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999998886
No 22
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.84 E-value=1.2e-19 Score=142.85 Aligned_cols=155 Identities=12% Similarity=0.039 Sum_probs=143.5
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHH
Q 024858 3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ 82 (261)
Q Consensus 3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA 82 (261)
....|++++|+.+|++++..+|..+.++..+|.++...|++++|+..+++++...|+++ .....+|.+|...|++++|
T Consensus 18 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~a~~~~~~~~~~~A 95 (186)
T 3as5_A 18 HAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNV--KVATVLGLTYVQVQKYDLA 95 (186)
T ss_dssp HHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHhcCHHHH
Confidence 45679999999999999999999999999999999999999999999999999999843 3556689999999999999
Q ss_pred HHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhh
Q 024858 83 IEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACN 161 (261)
Q Consensus 83 ~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~ 161 (261)
+..++++++.. |+++.++.++|.+|..+|++++|+..|++++..+|++.. +.+
T Consensus 96 ~~~~~~~~~~~--------------------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 149 (186)
T 3as5_A 96 VPLLIKVAEAN--------------------------PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRA 149 (186)
T ss_dssp HHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHhcC--------------------------cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHH
Confidence 99999999874 345678999999999999999999999999999999998 999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 162 LGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 162 L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
+|.++..+|++++|..++++++..
T Consensus 150 la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 150 IAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHc
Confidence 999999999999999999999986
No 23
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.84 E-value=4.9e-19 Score=152.00 Aligned_cols=203 Identities=16% Similarity=0.113 Sum_probs=162.4
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHH
Q 024858 3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ 82 (261)
Q Consensus 3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA 82 (261)
.+..|++++|+.+|++++..+|+++.++..+|.++...|++++|+..+++++..+|++. .....+|.+|...|++++|
T Consensus 31 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~la~~~~~~~~~~~A 108 (327)
T 3cv0_A 31 MLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDI--AVHAALAVSHTNEHNANAA 108 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCH--HHHHHHHHHHHHcCCHHHH
Confidence 45689999999999999999999999999999999999999999999999999999853 3556689999999999999
Q ss_pred HHHHHHHHHhhcchhhhc-Cc------------------chHHHhhc--hhhhh--hhcCCCcHHHHHHHHHHHHHcCCH
Q 024858 83 IEMLKRKLRLIYQGEAFN-GK------------------PTKTARSH--GKKFQ--VSVRQETSRLLGNLAWAYMQKTNF 139 (261)
Q Consensus 83 ~~~~~~al~l~~~~~~~~-~~------------------~~~~~~~~--~~~~~--~~l~p~~~~~~~~Lg~~~~~~g~~ 139 (261)
+..|+++++..|...... .. ........ ...+. +.+.|+++.++.++|.+|..+|++
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 188 (327)
T 3cv0_A 109 LASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNY 188 (327)
T ss_dssp HHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccH
Confidence 999999999865432111 00 00000000 01111 567899999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhCCCCCCc----------chhhHHHHHHHHHHHH
Q 024858 140 MAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCE----------DGRTRKRAEELLLELE 207 (261)
Q Consensus 140 ~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~~~~~~----------~~~~~~~a~~~l~~l~ 207 (261)
++|+..|++++..+|++.. +.++|.++...|++++|+.++++++...+..+. ..+.++.|...+....
T Consensus 189 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 267 (327)
T 3cv0_A 189 DSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAI 267 (327)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 9999999999999999998 999999999999999999999999997322211 1344556666665543
No 24
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.84 E-value=1.3e-19 Score=150.51 Aligned_cols=155 Identities=15% Similarity=0.114 Sum_probs=136.7
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCCh-------HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcC------------------
Q 024858 3 QLVQKDPEAAIVLFWKAINAGDRV-------DSALKDMAVVMKQLDRSEEAIEAIKSFRGLC------------------ 57 (261)
Q Consensus 3 ~~~~~~~~~A~~~~~~al~~~p~~-------~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~------------------ 57 (261)
....|++++|+..|++++..+|+. +.++..+|.++...|++++|+..+++++.+.
T Consensus 48 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~ 127 (258)
T 3uq3_A 48 EYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKK 127 (258)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHH
Confidence 456899999999999999988766 7899999999999999999999999999954
Q ss_pred --------CchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHH
Q 024858 58 --------SKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNL 129 (261)
Q Consensus 58 --------P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~L 129 (261)
|.+ ......+|.+|...|++++|+..|++++++. |+++.++.++
T Consensus 128 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--------------------------~~~~~~~~~l 179 (258)
T 3uq3_A 128 AEAEAYVNPEK--AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA--------------------------PEDARGYSNR 179 (258)
T ss_dssp HHHHHHCCHHH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------TTCHHHHHHH
T ss_pred HHHHHHcCcch--HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--------------------------cccHHHHHHH
Confidence 442 2345567778888888888888888877763 4567899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 130 AWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 130 g~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
|.+|..+|++++|+..|+++++.+|+++. +..+|.++..+|++++|+..|++++..
T Consensus 180 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 180 AAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999 999999999999999999999999997
No 25
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.84 E-value=8.6e-20 Score=156.95 Aligned_cols=181 Identities=12% Similarity=0.009 Sum_probs=142.3
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcC-CcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHH
Q 024858 3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLD-RSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEE 81 (261)
Q Consensus 3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g-~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~e 81 (261)
....|++++|+.++++++..+|+++.++..+|.++...| ++++|+..+++++..+|+++ .....+|.+|...|++++
T Consensus 66 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~l~~~~~~~~~~~~ 143 (330)
T 3hym_B 66 LVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYG--PAWIAYGHSFAVESEHDQ 143 (330)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCT--HHHHHHHHHHHHHTCHHH
T ss_pred HHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccH--HHHHHHHHHHHHccCHHH
Confidence 356789999999999999999999999999999999999 89999999999999998843 345568899999999999
Q ss_pred HHHHHHHHHHhhcchh-hhcCcchHHHhhch------hhhh--hhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 024858 82 QIEMLKRKLRLIYQGE-AFNGKPTKTARSHG------KKFQ--VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMI 152 (261)
Q Consensus 82 A~~~~~~al~l~~~~~-~~~~~~~~~~~~~~------~~~~--~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~ 152 (261)
|+..|++++++.|... .+.. ........+ ..+. +.+.|+++.++.++|.+|..+|++++|+..|++++.+
T Consensus 144 A~~~~~~a~~~~~~~~~~~~~-l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 222 (330)
T 3hym_B 144 AMAAYFTAAQLMKGCHLPMLY-IGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEK 222 (330)
T ss_dssp HHHHHHHHHHHTTTCSHHHHH-HHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 9999999998865421 1110 001000111 1111 5677888899999999999999999999999999988
Q ss_pred C---------CCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhCC
Q 024858 153 D---------PDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGR 186 (261)
Q Consensus 153 ~---------P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~ 186 (261)
. |.+.. +.++|.++..+|++++|+.+|++++...
T Consensus 223 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 266 (330)
T 3hym_B 223 IKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI 266 (330)
T ss_dssp HTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC
Confidence 6 55566 7889999999999999999999998873
No 26
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.84 E-value=4.4e-20 Score=166.13 Aligned_cols=154 Identities=10% Similarity=-0.005 Sum_probs=139.9
Q ss_pred hhhcCC-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHH
Q 024858 3 QLVQKD-PEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEE 81 (261)
Q Consensus 3 ~~~~~~-~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~e 81 (261)
....|+ +++|+.+|++++..+|++..+|+++|.++..+|++++|+..|++++.++|++. ..+..+|.+|...|++++
T Consensus 141 l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~--~a~~~lg~~~~~~g~~~e 218 (382)
T 2h6f_A 141 LKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNY--HAWQHRQWVIQEFKLWDN 218 (382)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHTCCTT
T ss_pred HHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCH--HHHHHHHHHHHHcCChHH
Confidence 345675 99999999999999999999999999999999999999999999999999953 455669999999999999
Q ss_pred HHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHH-cCCHHHH-----HHHHHHHHhhCCC
Q 024858 82 QIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQ-KTNFMAA-----EVVYQKAQMIDPD 155 (261)
Q Consensus 82 A~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~-~g~~~eA-----~~~~~~al~~~P~ 155 (261)
|+..|+++++++ |++..+|+++|.+|.. .|.+++| +.+|++++.++|+
T Consensus 219 Al~~~~~al~l~--------------------------P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~ 272 (382)
T 2h6f_A 219 ELQYVDQLLKED--------------------------VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPH 272 (382)
T ss_dssp HHHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhC--------------------------CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCC
Confidence 999999999974 4678899999999999 6665888 5999999999999
Q ss_pred chh-hhhHHHHHHHcC--CHHHHHHHHHHHHhC
Q 024858 156 ANK-ACNLGLCLIKRT--RYNEARSVLEDVLYG 185 (261)
Q Consensus 156 ~~~-~~~L~~~l~~~g--~~~eA~~~~~~~l~~ 185 (261)
+.. |+++|.++...| ++++|+..++++ ..
T Consensus 273 ~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~ 304 (382)
T 2h6f_A 273 NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP 304 (382)
T ss_dssp CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT
T ss_pred CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc
Confidence 999 999999999999 699999999997 54
No 27
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.84 E-value=3.9e-19 Score=152.80 Aligned_cols=229 Identities=13% Similarity=0.059 Sum_probs=177.2
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcC-CHHH
Q 024858 3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCG-KVEE 81 (261)
Q Consensus 3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g-~~~e 81 (261)
.+..|++++|+..|++++..+|.+..++..++.++...|++++|+..+++++..+|+++ .....+|.+|...| ++++
T Consensus 32 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~ 109 (330)
T 3hym_B 32 HYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNP--VSWFAVGCYYLMVGHKNEH 109 (330)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST--HHHHHHHHHHHHSCSCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCH--HHHHHHHHHHHHhhhhHHH
Confidence 35679999999999999999999999999999999999999999999999999999854 35566899999999 9999
Q ss_pred HHHHHHHHHHhhcchh-hhcCcchHHHhhch------hhhh--hhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 024858 82 QIEMLKRKLRLIYQGE-AFNGKPTKTARSHG------KKFQ--VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMI 152 (261)
Q Consensus 82 A~~~~~~al~l~~~~~-~~~~~~~~~~~~~~------~~~~--~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~ 152 (261)
|+..|++++++.|... ++.. ........+ ..+. +.+.|+...++.++|.+|..+|++++|+..|+++++.
T Consensus 110 A~~~~~~a~~~~~~~~~~~~~-l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 188 (330)
T 3hym_B 110 ARRYLSKATTLEKTYGPAWIA-YGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSI 188 (330)
T ss_dssp HHHHHHHHHTTCTTCTHHHHH-HHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCccHHHHHH-HHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 9999999999865422 2110 000000111 1111 5677888999999999999999999999999999999
Q ss_pred CCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhCCC--------CCCc-----------chhhHHHHHHHHHHHHhc-CC
Q 024858 153 DPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRI--------PGCE-----------DGRTRKRAEELLLELESK-QP 211 (261)
Q Consensus 153 ~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~~--------~~~~-----------~~~~~~~a~~~l~~l~~~-~~ 211 (261)
+|++.. +.++|.++..+|++++|+..+++++...+ +... ..+.++.|...+...... +.
T Consensus 189 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 268 (330)
T 3hym_B 189 APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ 268 (330)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCcc
Confidence 999998 99999999999999999999999998521 1110 245667777777765443 34
Q ss_pred CCchhhhcccchh--HHHHHHHHHH
Q 024858 212 PPDLSDLLGLNLE--DEFVNGLEEM 234 (261)
Q Consensus 212 ~~~~~~~~~~~~~--d~~~~~~~~~ 234 (261)
.+.+...+|..+. +++.++....
T Consensus 269 ~~~~~~~la~~~~~~g~~~~A~~~~ 293 (330)
T 3hym_B 269 NASTYSAIGYIHSLMGNFENAVDYF 293 (330)
T ss_dssp CSHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred chHHHHHHHHHHHHhccHHHHHHHH
Confidence 5666677777662 4444444433
No 28
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.84 E-value=1.7e-19 Score=156.16 Aligned_cols=176 Identities=15% Similarity=0.044 Sum_probs=143.5
Q ss_pred hhhcCCHHHHHHHHHHHHHc--CCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHH
Q 024858 3 QLVQKDPEAAIVLFWKAINA--GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVE 80 (261)
Q Consensus 3 ~~~~~~~~~A~~~~~~al~~--~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~ 80 (261)
....++.++|+..+++.+.. +|+++.++..+|.++.+.|++++|++.+++ |++ ......++.+|.++|+++
T Consensus 75 ~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~--~~~~~~l~~~~~~~g~~~ 147 (291)
T 3mkr_A 75 LASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDS--LECMAMTVQILLKLDRLD 147 (291)
T ss_dssp HHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCS--HHHHHHHHHHHHHTTCHH
T ss_pred HcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCC--HHHHHHHHHHHHHCCCHH
Confidence 34567899999999999875 699999999999999999999999999987 663 345667899999999999
Q ss_pred HHHHHHHHHHHhhcchhhhc-Cc-chHHHhhch------hhhh--hhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 024858 81 EQIEMLKRKLRLIYQGEAFN-GK-PTKTARSHG------KKFQ--VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQ 150 (261)
Q Consensus 81 eA~~~~~~al~l~~~~~~~~-~~-~~~~~~~~~------~~~~--~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al 150 (261)
+|+..|+++++..|...... .. ........+ ..+. +...|+++.+++++|.++.++|++++|+..|++++
T Consensus 148 ~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al 227 (291)
T 3mkr_A 148 LARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEAL 227 (291)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999865421111 00 000000001 1122 46689999999999999999999999999999999
Q ss_pred hhCCCchh-hhhHHHHHHHcCCHHH-HHHHHHHHHhC
Q 024858 151 MIDPDANK-ACNLGLCLIKRTRYNE-ARSVLEDVLYG 185 (261)
Q Consensus 151 ~~~P~~~~-~~~L~~~l~~~g~~~e-A~~~~~~~l~~ 185 (261)
+++|+++. +.++|.++..+|++++ +..++++++..
T Consensus 228 ~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 228 DKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 99999999 9999999999999987 56888999998
No 29
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.84 E-value=1.2e-19 Score=149.84 Aligned_cols=157 Identities=15% Similarity=0.133 Sum_probs=88.5
Q ss_pred hHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchh-hhcCcch
Q 024858 26 VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGE-AFNGKPT 104 (261)
Q Consensus 26 ~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~-~~~~~~~ 104 (261)
.+.++..+|.++...|++++|+..+++++..+|++. .....+|.+|...|++++|+..+++++++.|... .+.. ..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~--~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-la 98 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDA--IPYINFANLLSSVNELERALAFYDKALELDSSAATAYYG-AG 98 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH-HH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHH-HH
Confidence 456788899999999999999999999999999853 4566689999999999999999999999854221 1100 00
Q ss_pred HHHhhch------hhhh--hhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHH
Q 024858 105 KTARSHG------KKFQ--VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEA 175 (261)
Q Consensus 105 ~~~~~~~------~~~~--~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA 175 (261)
......+ ..+. +.+.|+++.++.++|.+|..+|++++|+..|++++..+|++.. +..+|.++...|++++|
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 0000000 0111 3445666666666666666666666666666666666666665 66666666666666666
Q ss_pred HHHHHHHHhC
Q 024858 176 RSVLEDVLYG 185 (261)
Q Consensus 176 ~~~~~~~l~~ 185 (261)
+.++++++..
T Consensus 179 ~~~~~~~~~~ 188 (243)
T 2q7f_A 179 LSQFAAVTEQ 188 (243)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 6666666664
No 30
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.84 E-value=1.9e-19 Score=162.06 Aligned_cols=181 Identities=15% Similarity=0.059 Sum_probs=111.3
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHH
Q 024858 3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ 82 (261)
Q Consensus 3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA 82 (261)
.+..|++++|+.+|++++..+|+++.++..+|.++...|++++|+..+++++..+|++ ......+|.+|..+|++++|
T Consensus 36 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~g~~~~A 113 (450)
T 2y4t_A 36 LLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDF--TAARLQRGHLLLKQGKLDEA 113 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHHcCCHHHH
Confidence 3567888888888888888888888888888888888888888888888888888874 33555688888888888888
Q ss_pred HHHHHHHHHhhcchh---h-hcCc--c---------hHHHhhch------hhhh--hhcCCCcHHHHHHHHHHHHHcCCH
Q 024858 83 IEMLKRKLRLIYQGE---A-FNGK--P---------TKTARSHG------KKFQ--VSVRQETSRLLGNLAWAYMQKTNF 139 (261)
Q Consensus 83 ~~~~~~al~l~~~~~---~-~~~~--~---------~~~~~~~~------~~~~--~~l~p~~~~~~~~Lg~~~~~~g~~ 139 (261)
+..|++++++.|... . +... . .......+ ..+. +.+.|+++.++.++|.+|...|++
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 193 (450)
T 2y4t_A 114 EDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEP 193 (450)
T ss_dssp HHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCH
Confidence 888888888755322 1 0000 0 00000000 0010 234455555555555555555555
Q ss_pred HHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 140 MAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 140 ~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
++|+..|++++..+|+++. +.++|.++...|++++|+..|++++..
T Consensus 194 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 240 (450)
T 2y4t_A 194 RKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL 240 (450)
T ss_dssp GGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5555555555555555554 455555555555555555555555443
No 31
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.84 E-value=4.6e-20 Score=140.21 Aligned_cols=121 Identities=12% Similarity=0.059 Sum_probs=108.4
Q ss_pred HHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchh
Q 024858 18 KAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGE 97 (261)
Q Consensus 18 ~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~ 97 (261)
++..++|+.++++.++|..+.++|++++|+..|+++++++|+++ .++..+|.+|.+.|++++|+..|+++++++
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~~~~~~~~~~~~~~A~~~~~~al~~~---- 77 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENA--ILYSNRAACLTKLMEFQRALDDCDTCIRLD---- 77 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHhhHHHhhccHHHHHHHHHHHHHhh----
Confidence 34568999999999999999999999999999999999999853 456669999999999999999999999874
Q ss_pred hhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHH
Q 024858 98 AFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCL 166 (261)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l 166 (261)
|+++.++.++|.+|..+|++++|+..|+++++++|++.. +.+|+.|+
T Consensus 78 ----------------------p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 78 ----------------------SKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp ----------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred ----------------------hhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 467789999999999999999999999999999999999 88888875
No 32
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.83 E-value=5.4e-20 Score=158.72 Aligned_cols=160 Identities=14% Similarity=0.030 Sum_probs=118.8
Q ss_pred CCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCc
Q 024858 23 GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGK 102 (261)
Q Consensus 23 ~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~ 102 (261)
-|...+++..+|..+.+.|++++|+..|+++++.+|+++ .+...||.+|...|++++|+..|+++++..|........
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~--~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~ 190 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNG--EIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLV 190 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCH--HHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHH
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcch--hHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHH
Confidence 377777788888888888888888888888888888743 345557788888888888888888877765522111000
Q ss_pred ----chHHHhhc--hhhhh--hhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc--hh-hhhHHHHHHHcCC
Q 024858 103 ----PTKTARSH--GKKFQ--VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDA--NK-ACNLGLCLIKRTR 171 (261)
Q Consensus 103 ----~~~~~~~~--~~~~~--~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~--~~-~~~L~~~l~~~g~ 171 (261)
........ ...+. +.+.|++++++.+||.+|..+|++++|+..|+++++.+|++ .. +.+||.++..+|+
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence 00000000 00111 56678999999999999999999999999999999999998 66 8899999999999
Q ss_pred HHHHHHHHHHHHh
Q 024858 172 YNEARSVLEDVLY 184 (261)
Q Consensus 172 ~~eA~~~~~~~l~ 184 (261)
.++|...|++++.
T Consensus 271 ~~~a~~~~r~al~ 283 (287)
T 3qou_A 271 GDALASXYRRQLY 283 (287)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHH
Confidence 9999999999876
No 33
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.83 E-value=1.2e-20 Score=147.49 Aligned_cols=132 Identities=11% Similarity=0.063 Sum_probs=114.3
Q ss_pred HHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhch
Q 024858 32 DMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHG 111 (261)
Q Consensus 32 ~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~ 111 (261)
.||.++..+|++++|++.+++++...|+++ ..+..+|.+|.+.|++++|++.|+++++++
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~--~~~~~la~~y~~~~~~~~A~~~~~~al~~~------------------ 61 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQKS--IKGFYFAKLYYEAKEYDLAKKYICTYINVQ------------------ 61 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHHH--TTHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCcccH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------------------
Confidence 478999999999999999999999988843 345569999999999999999999999974
Q ss_pred hhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHH-HHHHHhCCCCC
Q 024858 112 KKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSV-LEDVLYGRIPG 189 (261)
Q Consensus 112 ~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~-~~~~l~~~~~~ 189 (261)
|+++.+|.++|.+|..+|++++|+..|+++++++|+++. ++++|.+|.++|++++|+.. +++++.. +
T Consensus 62 --------p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l---~ 130 (150)
T 4ga2_A 62 --------ERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL---F 130 (150)
T ss_dssp --------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH---S
T ss_pred --------CCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh---C
Confidence 567899999999999999999999999999999999999 99999999999999988876 5899998 5
Q ss_pred Ccchh
Q 024858 190 CEDGR 194 (261)
Q Consensus 190 ~~~~~ 194 (261)
|.++.
T Consensus 131 P~~~~ 135 (150)
T 4ga2_A 131 PGSPA 135 (150)
T ss_dssp TTCHH
T ss_pred cCCHH
Confidence 55544
No 34
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.83 E-value=1e-18 Score=151.44 Aligned_cols=181 Identities=15% Similarity=0.141 Sum_probs=149.1
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHH
Q 024858 3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ 82 (261)
Q Consensus 3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA 82 (261)
....|++++|+..|.+++..+|+++.++..+|.++...|++++|+..+++++...|+++ .....+|.+|...|++++|
T Consensus 130 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~la~~~~~~~~~~~A 207 (359)
T 3ieg_A 130 AFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNT--EAFYKISTLYYQLGDHELS 207 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCH--HHHHHHHHHHHHHTCHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHH
Confidence 35679999999999999999999999999999999999999999999999999999853 4566799999999999999
Q ss_pred HHHHHHHHHhhcchhh-hc--Ccc---------hHHHhhchh------hhh--hhcCCCcHH----HHHHHHHHHHHcCC
Q 024858 83 IEMLKRKLRLIYQGEA-FN--GKP---------TKTARSHGK------KFQ--VSVRQETSR----LLGNLAWAYMQKTN 138 (261)
Q Consensus 83 ~~~~~~al~l~~~~~~-~~--~~~---------~~~~~~~~~------~~~--~~l~p~~~~----~~~~Lg~~~~~~g~ 138 (261)
+..+++++++.|.... +. ... .......+. .+. +.+.|+++. ++.++|.+|..+|+
T Consensus 208 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 287 (359)
T 3ieg_A 208 LSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEK 287 (359)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccC
Confidence 9999999998664321 10 000 000000110 111 466788764 46679999999999
Q ss_pred HHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 139 FMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 139 ~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
+++|+..|+++++.+|+++. +.++|.++...|++++|+..|++++..
T Consensus 288 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 288 PVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 99999999999999999998 999999999999999999999999998
No 35
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.83 E-value=3.4e-20 Score=178.23 Aligned_cols=153 Identities=12% Similarity=-0.074 Sum_probs=133.8
Q ss_pred hhcCCHHHHHHHHHHHH--------HcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Q 024858 4 LVQKDPEAAIVLFWKAI--------NAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKK 75 (261)
Q Consensus 4 ~~~~~~~~A~~~~~~al--------~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~ 75 (261)
+..|++++|+..|++++ ..+|++..++..+|.++.++|++++|+..|+++++.+|+++ .+++.+|.+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~--~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRW--RLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCH--HHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchH--HHHHHHHHHHHH
Confidence 46799999999999999 89999999999999999999999999999999999999953 456679999999
Q ss_pred cCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 024858 76 CGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPD 155 (261)
Q Consensus 76 ~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~ 155 (261)
.|++++|+..|+++++++| +++.++.++|.+|.++|++++ +..|++|++++|+
T Consensus 480 ~g~~~~A~~~~~~al~l~P--------------------------~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~ 532 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFP--------------------------GELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG 532 (681)
T ss_dssp HTCHHHHHHHHHHHHHHST--------------------------TCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT
T ss_pred cCCHHHHHHHHHHHHHhCC--------------------------CChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc
Confidence 9999999999999999854 556778888888888888888 8888888888888
Q ss_pred chh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 156 ANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 156 ~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
+.. ++++|.++..+|++++|+..|++++..
T Consensus 533 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 563 (681)
T 2pzi_A 533 VISAAFGLARARSAEGDRVGAVRTLDEVPPT 563 (681)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHTSCTT
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHhhccc
Confidence 887 888888888888888888888888776
No 36
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.83 E-value=1.5e-18 Score=156.21 Aligned_cols=181 Identities=14% Similarity=0.118 Sum_probs=151.4
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHH
Q 024858 3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ 82 (261)
Q Consensus 3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA 82 (261)
....|++++|+.+|++++..+|.++.++..+|.++...|++++|+..+++++..+|+++ .....+|.+|...|++++|
T Consensus 153 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A 230 (450)
T 2y4t_A 153 AFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNT--EAFYKISTLYYQLGDHELS 230 (450)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCH--HHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHH
Confidence 45679999999999999999999999999999999999999999999999999999853 4566799999999999999
Q ss_pred HHHHHHHHHhhcchhhhcCcc------------hHHHhhchh------hhh--hhcCCCcHH----HHHHHHHHHHHcCC
Q 024858 83 IEMLKRKLRLIYQGEAFNGKP------------TKTARSHGK------KFQ--VSVRQETSR----LLGNLAWAYMQKTN 138 (261)
Q Consensus 83 ~~~~~~al~l~~~~~~~~~~~------------~~~~~~~~~------~~~--~~l~p~~~~----~~~~Lg~~~~~~g~ 138 (261)
+..|++++++.|......... .......+. .+. +.+.|+++. ++.++|.++...|+
T Consensus 231 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~ 310 (450)
T 2y4t_A 231 LSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEK 310 (450)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCC
Confidence 999999999866432111000 000001111 111 467788754 78899999999999
Q ss_pred HHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 139 FMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 139 ~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
+++|+..|++++.++|+++. +.++|.++..+|++++|+..|++++..
T Consensus 311 ~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 311 PVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 99999999999999999999 999999999999999999999999997
No 37
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.83 E-value=8.7e-19 Score=153.52 Aligned_cols=181 Identities=19% Similarity=0.153 Sum_probs=148.9
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHH--------------H
Q 024858 3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDN--------------V 68 (261)
Q Consensus 3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~--------------~ 68 (261)
....|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++...|++....... .
T Consensus 108 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (368)
T 1fch_A 108 QAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRI 187 (368)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CT
T ss_pred HHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999743221111 3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhcc--hh-hhcCcchHHHhhch------hhhh--hhcCCCcHHHHHHHHHHHHHcC
Q 024858 69 LIDLYKKCGKVEEQIEMLKRKLRLIYQ--GE-AFNGKPTKTARSHG------KKFQ--VSVRQETSRLLGNLAWAYMQKT 137 (261)
Q Consensus 69 L~~ly~~~g~~~eA~~~~~~al~l~~~--~~-~~~~~~~~~~~~~~------~~~~--~~l~p~~~~~~~~Lg~~~~~~g 137 (261)
++.++ ..|++++|+..|++++++.|. .. .+.. ........+ ..+. +.+.|+++.++.++|.+|..+|
T Consensus 188 ~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g 265 (368)
T 1fch_A 188 LGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCG-LGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGN 265 (368)
T ss_dssp THHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcC
Confidence 56666 899999999999999998765 11 1110 001111111 1111 5678999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 138 NFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 138 ~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
++++|+..|+++++++|++.. +.++|.++..+|++++|+.+|++++..
T Consensus 266 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 314 (368)
T 1fch_A 266 QSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNM 314 (368)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 999999999999999999998 999999999999999999999999996
No 38
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.82 E-value=2.3e-19 Score=150.79 Aligned_cols=154 Identities=14% Similarity=0.018 Sum_probs=135.8
Q ss_pred hhcCCHHHHHHHHHHHHHc----CCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCH
Q 024858 4 LVQKDPEAAIVLFWKAINA----GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKV 79 (261)
Q Consensus 4 ~~~~~~~~A~~~~~~al~~----~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~ 79 (261)
...|++++|+..|.++++. +|..+.++..+|.++...|++++|+..+++++..+|+++ .....+|.+|...|++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMP--EVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHTTCH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcH--HHHHHHHHHHHHccCH
Confidence 4568899999999999987 456789999999999999999999999999999999853 4566799999999999
Q ss_pred HHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-
Q 024858 80 EEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK- 158 (261)
Q Consensus 80 ~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~- 158 (261)
++|+..|++++++. |+++.++.++|.+|..+|++++|+..|+++++++|++..
T Consensus 94 ~~A~~~~~~al~~~--------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 147 (275)
T 1xnf_A 94 DAAYEAFDSVLELD--------------------------PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFR 147 (275)
T ss_dssp HHHHHHHHHHHHHC--------------------------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHhcC--------------------------ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHH
Confidence 99999999999974 345679999999999999999999999999999999987
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHhCC
Q 024858 159 ACNLGLCLIKRTRYNEARSVLEDVLYGR 186 (261)
Q Consensus 159 ~~~L~~~l~~~g~~~eA~~~~~~~l~~~ 186 (261)
...++ .+...|++++|+..+++++...
T Consensus 148 ~~~~~-~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 148 SLWLY-LAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHH-HHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHH-HHHHhcCHHHHHHHHHHHHhcC
Confidence 44444 4467799999999999988863
No 39
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.82 E-value=1e-18 Score=139.34 Aligned_cols=133 Identities=18% Similarity=0.065 Sum_probs=122.9
Q ss_pred ChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcch
Q 024858 25 RVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPT 104 (261)
Q Consensus 25 ~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~ 104 (261)
+.+.++.+||.++.++|++++|++.|+++++++|+++ .....+|.+|.+.|++++|+..+++++...
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~~~~~~a~~~~~~~~~~~----------- 69 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNV--ETLLKLGKTYMDIGLPNDAIESLKKFVVLD----------- 69 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-----------
Confidence 4567899999999999999999999999999999953 456669999999999999999999998864
Q ss_pred HHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHH
Q 024858 105 KTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVL 183 (261)
Q Consensus 105 ~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l 183 (261)
|+++.++.++|.++...+++++|+..+.+++.++|++.. +..+|.++..+|++++|+..|++++
T Consensus 70 ---------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l 134 (184)
T 3vtx_A 70 ---------------TTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTI 134 (184)
T ss_dssp ---------------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ---------------chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHH
Confidence 456789999999999999999999999999999999999 9999999999999999999999999
Q ss_pred hC
Q 024858 184 YG 185 (261)
Q Consensus 184 ~~ 185 (261)
..
T Consensus 135 ~~ 136 (184)
T 3vtx_A 135 SI 136 (184)
T ss_dssp HH
T ss_pred Hh
Confidence 98
No 40
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.82 E-value=3.6e-20 Score=147.89 Aligned_cols=153 Identities=14% Similarity=0.045 Sum_probs=129.2
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHH-HHcCCHHH
Q 024858 3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLY-KKCGKVEE 81 (261)
Q Consensus 3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly-~~~g~~~e 81 (261)
.+..|++++|+..|++++..+|+++.++..+|.++..+|++++|+..+++++...| ++. +...++.+. ...++..+
T Consensus 16 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~--~~~~~~~~~~~~~~~~~~ 92 (176)
T 2r5s_A 16 LLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNS--YKSLIAKLELHQQAAESP 92 (176)
T ss_dssp HHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHH--HHHHHHHHHHHHHHTSCH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChH--HHHHHHHHHHHhhcccch
Confidence 46689999999999999999999999999999999999999999999999999888 432 233334332 23344456
Q ss_pred HHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc--hh-
Q 024858 82 QIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDA--NK- 158 (261)
Q Consensus 82 A~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~--~~- 158 (261)
|+..|++++++. |+++.++.++|.+|..+|++++|+..|+++++.+|+. ..
T Consensus 93 a~~~~~~al~~~--------------------------P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a 146 (176)
T 2r5s_A 93 ELKRLEQELAAN--------------------------PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEV 146 (176)
T ss_dssp HHHHHHHHHHHS--------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHH
T ss_pred HHHHHHHHHHhC--------------------------CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHH
Confidence 788888888864 5678899999999999999999999999999999986 45
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHh
Q 024858 159 ACNLGLCLIKRTRYNEARSVLEDVLY 184 (261)
Q Consensus 159 ~~~L~~~l~~~g~~~eA~~~~~~~l~ 184 (261)
+.+||.++..+|+.++|+..|++++.
T Consensus 147 ~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 147 KKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 88999999999999999999999886
No 41
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.82 E-value=2.5e-18 Score=143.14 Aligned_cols=155 Identities=14% Similarity=0.044 Sum_probs=143.3
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--cCCchhHHHHHHHHHHHHHHcCCHH
Q 024858 3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRG--LCSKQSQESLDNVLIDLYKKCGKVE 80 (261)
Q Consensus 3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~--~~P~~~~~~~~~~L~~ly~~~g~~~ 80 (261)
....|++++|+.+|++++..+|....++..+|.++...|++++|+..+++++. ..|.+ ......+|.+|...|+++
T Consensus 81 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~la~~~~~~g~~~ 158 (252)
T 2ho1_A 81 FQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPER--SRVFENLGLVSLQMKKPA 158 (252)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTH--HHHHHHHHHHHHHTTCHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCccc--HHHHHHHHHHHHHcCCHH
Confidence 45689999999999999999999999999999999999999999999999999 77763 345667999999999999
Q ss_pred HHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-h
Q 024858 81 EQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-A 159 (261)
Q Consensus 81 eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~ 159 (261)
+|+..|+++++.. |+++.++..+|.+|..+|++++|+..|+++++.+|++.. +
T Consensus 159 ~A~~~~~~~~~~~--------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 212 (252)
T 2ho1_A 159 QAKEYFEKSLRLN--------------------------RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSL 212 (252)
T ss_dssp HHHHHHHHHHHHC--------------------------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHH
T ss_pred HHHHHHHHHHhcC--------------------------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHH
Confidence 9999999999874 346678999999999999999999999999999999998 8
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 160 CNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 160 ~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
..++.++...|++++|..++++++..
T Consensus 213 ~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 213 LLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 89999999999999999999999997
No 42
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.82 E-value=3.7e-19 Score=166.85 Aligned_cols=153 Identities=12% Similarity=0.006 Sum_probs=125.8
Q ss_pred cCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHH
Q 024858 6 QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEM 85 (261)
Q Consensus 6 ~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~ 85 (261)
.|++++|+.+|+++++.+|+++.++..+|.++..+|++++|++.++++++++|+++ .....+|.+|..+|++++|++.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHP--EAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCH--HHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHCCCHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999853 4566799999999999999999
Q ss_pred HHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHH
Q 024858 86 LKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGL 164 (261)
Q Consensus 86 ~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~ 164 (261)
|++++++. |+++.++.++|.+|..+|++++|+..|+++++++|++.. +.++|.
T Consensus 80 ~~~al~~~--------------------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 133 (568)
T 2vsy_A 80 LQQASDAA--------------------------PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLN 133 (568)
T ss_dssp HHHHHHHC--------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHhcC--------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 99999974 456789999999999999999999999999999999998 999999
Q ss_pred HHHHc---CCHHHHHHHHHHHHhCC
Q 024858 165 CLIKR---TRYNEARSVLEDVLYGR 186 (261)
Q Consensus 165 ~l~~~---g~~~eA~~~~~~~l~~~ 186 (261)
++..+ |++++|...|++++..+
T Consensus 134 ~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 134 WRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhhccccHHHHHHHHHHHHhcC
Confidence 99999 99999999999999974
No 43
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.82 E-value=8.6e-20 Score=143.48 Aligned_cols=127 Identities=15% Similarity=0.140 Sum_probs=102.3
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHH
Q 024858 48 EAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLG 127 (261)
Q Consensus 48 ~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~ 127 (261)
..+++++.++|+++ .....+|.+|.+.|++++|+..|+++++++ |+++.+|.
T Consensus 23 ~~l~~al~l~p~~~--~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--------------------------P~~~~~~~ 74 (151)
T 3gyz_A 23 ATLKDINAIPDDMM--DDIYSYAYDFYNKGRIEEAEVFFRFLCIYD--------------------------FYNVDYIM 74 (151)
T ss_dssp CCTGGGCCSCHHHH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------TTCHHHHH
T ss_pred CCHHHHhCCCHHHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------------------------CCCHHHHH
Confidence 45667788888843 345568888899999999999999988874 46778899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchhhHHHHHHHHHHH
Q 024858 128 NLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELLLEL 206 (261)
Q Consensus 128 ~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~a~~~l~~l 206 (261)
+||.+|..+|++++|+..|+++++++|+++. ++++|.+|..+|++++|+..|++++.. .++ ..-.++|..++..+
T Consensus 75 ~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l---~~~-~~~~~~A~~ll~~l 150 (151)
T 3gyz_A 75 GLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQH---SND-EKLKIKAQSYLDAI 150 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC-HHHHHHHHHHHHhh
Confidence 9999999999999999999999999999998 889999999999999999999999987 222 22445677766654
No 44
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.81 E-value=1.3e-18 Score=159.92 Aligned_cols=154 Identities=14% Similarity=0.101 Sum_probs=132.1
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHH
Q 024858 3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ 82 (261)
Q Consensus 3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA 82 (261)
....|++++|+.+|++++..+|+ +.++..+|.++...|++++|+..+++++..+|+++ .....+|.+|...|++++|
T Consensus 253 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A 329 (537)
T 3fp2_A 253 HFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYP--PTYYHRGQMYFILQDYKNA 329 (537)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHH
T ss_pred HHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCH--HHHHHHHHHHHhcCCHHHH
Confidence 45678999999999999999999 89999999999999999999999999999999853 3566799999999999999
Q ss_pred HHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhh
Q 024858 83 IEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACN 161 (261)
Q Consensus 83 ~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~ 161 (261)
+..|++++++.| +++.++.++|.+|..+|++++|+..|+++++.+|+++. +.+
T Consensus 330 ~~~~~~a~~~~~--------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 383 (537)
T 3fp2_A 330 KEDFQKAQSLNP--------------------------ENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTF 383 (537)
T ss_dssp HHHHHHHHHHCT--------------------------TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHH
T ss_pred HHHHHHHHHhCC--------------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 999999998743 34567778888888888888888888888888888877 777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 162 LGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 162 L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
+|.++...|++++|+..|++++..
T Consensus 384 l~~~~~~~g~~~~A~~~~~~a~~~ 407 (537)
T 3fp2_A 384 FAEILTDRGDFDTAIKQYDIAKRL 407 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHc
Confidence 888888888888888888887775
No 45
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.81 E-value=1.5e-18 Score=145.91 Aligned_cols=156 Identities=17% Similarity=0.096 Sum_probs=131.3
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchh--HHHHHHHHHHHHHHcCCHH
Q 024858 3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQS--QESLDNVLIDLYKKCGKVE 80 (261)
Q Consensus 3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~--~~~~~~~L~~ly~~~g~~~ 80 (261)
.+..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++. .|.++ .......+|.+|...|+++
T Consensus 13 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~ 91 (272)
T 3u4t_A 13 LFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDS 91 (272)
T ss_dssp HHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHH
Confidence 46789999999999999999999999999999999999999999999999999 44321 1223567999999999999
Q ss_pred HHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-h
Q 024858 81 EQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-A 159 (261)
Q Consensus 81 eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~ 159 (261)
+|+..|++++++.| +++.++.++|.+|..+|++++|+..|+++++++|++.. +
T Consensus 92 ~A~~~~~~a~~~~~--------------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 145 (272)
T 3u4t_A 92 LAIQQYQAAVDRDT--------------------------TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVF 145 (272)
T ss_dssp HHHHHHHHHHHHST--------------------------TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHH
T ss_pred HHHHHHHHHHhcCc--------------------------ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHH
Confidence 99999999999753 45567888888888888888888888888888888887 8
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 160 CNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 160 ~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
.++|......+++++|+..|++++..
T Consensus 146 ~~l~~~~~~~~~~~~A~~~~~~a~~~ 171 (272)
T 3u4t_A 146 YELGQAYYYNKEYVKADSSFVKVLEL 171 (272)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88884444455888888888888886
No 46
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.81 E-value=1.9e-19 Score=141.52 Aligned_cols=118 Identities=9% Similarity=-0.030 Sum_probs=107.3
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 024858 12 AIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLR 91 (261)
Q Consensus 12 A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~ 91 (261)
+-..|++++..+|+++++++.+|.++.++|++++|+..|++++.++|+++ ..+..+|.+|...|++++|+..|+++++
T Consensus 21 ~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~--~~~~~lg~~~~~~g~~~~Ai~~~~~al~ 98 (151)
T 3gyz_A 21 SGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNV--DYIMGLAAIYQIKEQFQQAADLYAVAFA 98 (151)
T ss_dssp TSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHHccHHHHHHHHHHHHh
Confidence 33456677889999999999999999999999999999999999999954 3566699999999999999999999999
Q ss_pred hhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch
Q 024858 92 LIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN 157 (261)
Q Consensus 92 l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~ 157 (261)
+. |+++.+++++|.+|..+|++++|+..|++++++.|+.+
T Consensus 99 l~--------------------------P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 99 LG--------------------------KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HS--------------------------SSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred hC--------------------------CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 74 56788999999999999999999999999999999886
No 47
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.80 E-value=5.1e-19 Score=163.09 Aligned_cols=189 Identities=14% Similarity=0.053 Sum_probs=139.5
Q ss_pred cCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhhcchh-hhcCcchHHHhhch------
Q 024858 40 LDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKV-EEQIEMLKRKLRLIYQGE-AFNGKPTKTARSHG------ 111 (261)
Q Consensus 40 ~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~-~eA~~~~~~al~l~~~~~-~~~~~~~~~~~~~~------ 111 (261)
.+++++++..++......|.++ .....+|.+|...|++ ++|+..|++++++.|... ++.. ........+
T Consensus 81 ~~~~~~al~~l~~~~~~~~~~a--~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~-lg~~~~~~g~~~~A~ 157 (474)
T 4abn_A 81 QEEMEKTLQQMEEVLGSAQVEA--QALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQ-LGEVYWKKGDVTSAH 157 (474)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCH--HHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHH-HHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccCchhH--HHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHH-HHHHHHHcCCHHHHH
Confidence 4567899999999998888743 4566799999999999 999999999999976432 2221 001111111
Q ss_pred hhhh--hhcCCCcHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHc--------CC
Q 024858 112 KKFQ--VSVRQETSRLLGNLAWAYMQK---------TNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKR--------TR 171 (261)
Q Consensus 112 ~~~~--~~l~p~~~~~~~~Lg~~~~~~---------g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~--------g~ 171 (261)
..+. +.+.|+ +.++.++|.+|..+ |++++|+..|+++++++|++.. +.+||.+|..+ |+
T Consensus 158 ~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~ 236 (474)
T 4abn_A 158 TCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKI 236 (474)
T ss_dssp HHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccch
Confidence 1122 678899 69999999999999 9999999999999999999999 99999999999 99
Q ss_pred HHHHHHHHHHHHhCCC---CCCc----------chhhHHHHHHHHHHHHhcCC-CCchhhhcccch--hHHHHHHHH
Q 024858 172 YNEARSVLEDVLYGRI---PGCE----------DGRTRKRAEELLLELESKQP-PPDLSDLLGLNL--EDEFVNGLE 232 (261)
Q Consensus 172 ~~eA~~~~~~~l~~~~---~~~~----------~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~~~~--~d~~~~~~~ 232 (261)
+++|+..|++++...+ ..+. ..+.++.|...+.......| .+.+...++..+ .+++.+++.
T Consensus 237 ~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~ 313 (474)
T 4abn_A 237 SQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLE 313 (474)
T ss_dssp HHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999733 1111 24666777777776544444 455555666554 244444443
No 48
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.80 E-value=2.1e-18 Score=160.82 Aligned_cols=214 Identities=15% Similarity=0.085 Sum_probs=153.0
Q ss_pred hhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHH
Q 024858 4 LVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQI 83 (261)
Q Consensus 4 ~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~ 83 (261)
...|++++|...|.+++..+|+++.++..+|.++.+.|++++|++.+++++..+|++ ...++.++.+|.+.|++++|+
T Consensus 350 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~ 427 (597)
T 2xpi_A 350 HESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQF--GPAWIGFAHSFAIEGEHDQAI 427 (597)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHTCHHHHH
T ss_pred HHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHH
Confidence 456888889999988888888888888888888989999999999998888888874 335566888888889999999
Q ss_pred HHHHHHHHhhcchh-hhcCcchHHHhhch------hhhh--hhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--
Q 024858 84 EMLKRKLRLIYQGE-AFNGKPTKTARSHG------KKFQ--VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMI-- 152 (261)
Q Consensus 84 ~~~~~al~l~~~~~-~~~~~~~~~~~~~~------~~~~--~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~-- 152 (261)
+.|+++++..|... .+.. ........+ ..+. +.+.|+++.++.++|.+|.+.|++++|+..|+++++.
T Consensus 428 ~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 506 (597)
T 2xpi_A 428 SAYTTAARLFQGTHLPYLF-LGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVK 506 (597)
T ss_dssp HHHHHHHHTTTTCSHHHHH-HHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCccchHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhh
Confidence 99988888765332 2211 000000111 1121 4667888888888999999999999999999998888
Q ss_pred ----CCCc-hh-hhhHHHHHHHcCCHHHHHHHHHHHHhCCCCCCc----------chhhHHHHHHHHHHHHhcCC-CCch
Q 024858 153 ----DPDA-NK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCE----------DGRTRKRAEELLLELESKQP-PPDL 215 (261)
Q Consensus 153 ----~P~~-~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~~~~~~----------~~~~~~~a~~~l~~l~~~~~-~~~~ 215 (261)
+|++ .. +.++|.+|...|++++|+.+|++++...+.++. ..+.++.|.+.+..+....| ++.+
T Consensus 507 ~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 586 (597)
T 2xpi_A 507 KTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMA 586 (597)
T ss_dssp HSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred ccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHH
Confidence 6665 45 788888999999999999999888886322211 24556667777766544343 3344
Q ss_pred hhhcc
Q 024858 216 SDLLG 220 (261)
Q Consensus 216 ~~~~~ 220 (261)
...++
T Consensus 587 ~~~l~ 591 (597)
T 2xpi_A 587 SDLLK 591 (597)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 43333
No 49
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.80 E-value=7.1e-18 Score=145.92 Aligned_cols=173 Identities=10% Similarity=0.058 Sum_probs=129.5
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc--CCchhHHHHHHHHHHHHHHcCCHH
Q 024858 3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGL--CSKQSQESLDNVLIDLYKKCGKVE 80 (261)
Q Consensus 3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~--~P~~~~~~~~~~L~~ly~~~g~~~ 80 (261)
.+..|+++.|+..++. .+|....++..++..+...|+.++|++.+++++.. +|+++ .+...+|.+|...|+++
T Consensus 44 yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~--~~~~~la~~~~~~g~~~ 118 (291)
T 3mkr_A 44 YLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNT--TFLLMAASIYFYDQNPD 118 (291)
T ss_dssp HHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCH--HHHHHHHHHHHHTTCHH
T ss_pred HHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCH--HHHHHHHHHHHHCCCHH
Confidence 5678999999987765 36667888999999999999999999999998875 58853 45677999999999999
Q ss_pred HHHHHHHHHHHhhcch-hhhcCcchHHHhhch------hhhh--hhcCCCcHHHHHHHH--HHHHHcCCHHHHHHHHHHH
Q 024858 81 EQIEMLKRKLRLIYQG-EAFNGKPTKTARSHG------KKFQ--VSVRQETSRLLGNLA--WAYMQKTNFMAAEVVYQKA 149 (261)
Q Consensus 81 eA~~~~~~al~l~~~~-~~~~~~~~~~~~~~~------~~~~--~~l~p~~~~~~~~Lg--~~~~~~g~~~eA~~~~~~a 149 (261)
+|++.|++ |.. .++.. ........+ ..+. +.+.|++.......| .++...|++++|+..|+++
T Consensus 119 ~Al~~l~~-----~~~~~~~~~-l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~ 192 (291)
T 3mkr_A 119 AALRTLHQ-----GDSLECMAM-TVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEM 192 (291)
T ss_dssp HHHHHHTT-----CCSHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHH
T ss_pred HHHHHHhC-----CCCHHHHHH-HHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 99999998 211 11110 000000111 1111 455677654433333 3334558999999999999
Q ss_pred HhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhCC
Q 024858 150 QMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGR 186 (261)
Q Consensus 150 l~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~ 186 (261)
++.+|+++. ++++|.++..+|++++|+..|++++..+
T Consensus 193 l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 193 ADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999998 8899999999999999999999999973
No 50
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.80 E-value=1e-17 Score=136.11 Aligned_cols=155 Identities=12% Similarity=-0.060 Sum_probs=140.9
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHc-CCcHHHHHHHHHHHh--cCCchhHHHHHHHHHHHHHHcCCH
Q 024858 3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQL-DRSEEAIEAIKSFRG--LCSKQSQESLDNVLIDLYKKCGKV 79 (261)
Q Consensus 3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~-g~~~eAi~~~~~~~~--~~P~~~~~~~~~~L~~ly~~~g~~ 79 (261)
....|++++|+.+|++++..+|.++.++..+|.++... |++++|+..+++++. ..|. .......+|.+|...|++
T Consensus 52 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~ 129 (225)
T 2vq2_A 52 YQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPT--PYIANLNKGICSAKQGQF 129 (225)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSC--HHHHHHHHHHHHHHTTCH
T ss_pred HHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcc--hHHHHHHHHHHHHHcCCH
Confidence 45689999999999999999999999999999999999 999999999999999 5555 234566799999999999
Q ss_pred HHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-Cchh
Q 024858 80 EEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDP-DANK 158 (261)
Q Consensus 80 ~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P-~~~~ 158 (261)
++|+..++++++.. |+++.++.++|.++..+|++++|+..|++++..+| ++..
T Consensus 130 ~~A~~~~~~~~~~~--------------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 183 (225)
T 2vq2_A 130 GLAEAYLKRSLAAQ--------------------------PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQAD 183 (225)
T ss_dssp HHHHHHHHHHHHHS--------------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHH
T ss_pred HHHHHHHHHHHHhC--------------------------CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHH
Confidence 99999999999874 34677899999999999999999999999999999 8888
Q ss_pred -hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 159 -ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 159 -~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
+..++.++...|++++|..+++.++..
T Consensus 184 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 184 DLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 778899999999999999999999876
No 51
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.80 E-value=3.4e-18 Score=141.75 Aligned_cols=175 Identities=11% Similarity=-0.035 Sum_probs=139.5
Q ss_pred chhhcCCHHHHHHHHHHHHHcCCCh---HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHH-HHHHHHHHHHHH--
Q 024858 2 VQLVQKDPEAAIVLFWKAINAGDRV---DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQE-SLDNVLIDLYKK-- 75 (261)
Q Consensus 2 ~~~~~~~~~~A~~~~~~al~~~p~~---~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~-~~~~~L~~ly~~-- 75 (261)
..+..|++++|+..|++++...|.. +.++..+|.++..+|++++|+..|+++++.+|++... .....+|.+|..
T Consensus 13 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~ 92 (225)
T 2yhc_A 13 QKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALD 92 (225)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhh
Confidence 3567899999999999999987765 5789999999999999999999999999999985321 234557777765
Q ss_pred ----------------cCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCH
Q 024858 76 ----------------CGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNF 139 (261)
Q Consensus 76 ----------------~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~ 139 (261)
.|++++|+..|+++++..|............ ..+..........+|.+|..+|++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l---------~~~~~~~~~~~~~~a~~~~~~~~~ 163 (225)
T 2yhc_A 93 DSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRL---------VFLKDRLAKYEYSVAEYYTERGAW 163 (225)
T ss_dssp C--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred hhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHcCcH
Confidence 6899999999999999876332100000000 001112234557899999999999
Q ss_pred HHHHHHHHHHHhhCCCch---h-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 140 MAAEVVYQKAQMIDPDAN---K-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 140 ~eA~~~~~~al~~~P~~~---~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
++|+..|+++++..|+++ . +..+|.++.++|++++|+..++++...
T Consensus 164 ~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 164 VAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp HHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 999999999999999986 4 789999999999999999999998887
No 52
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.80 E-value=8.7e-18 Score=138.62 Aligned_cols=135 Identities=10% Similarity=-0.038 Sum_probs=122.6
Q ss_pred CCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCC-chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcC
Q 024858 23 GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCS-KQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNG 101 (261)
Q Consensus 23 ~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P-~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~ 101 (261)
.+.+++++..+|.++...|++++|+..|++++.++| .+. .....+|.+|...|++++|+..|++++++.
T Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-------- 72 (228)
T 4i17_A 3 QTTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDS--VTAYNCGVCADNIKKYKEAADYFDIAIKKN-------- 72 (228)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--------
T ss_pred cccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCc--HHHHHHHHHHHHhhcHHHHHHHHHHHHHhC--------
Confidence 355678999999999999999999999999999998 543 344459999999999999999999999874
Q ss_pred cchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch-------h-hhhHHHHHHHcCCHH
Q 024858 102 KPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN-------K-ACNLGLCLIKRTRYN 173 (261)
Q Consensus 102 ~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~-------~-~~~L~~~l~~~g~~~ 173 (261)
|+++.++.++|.+|..+|++++|+..|+++++++|+++ . +.++|.++..+|+++
T Consensus 73 ------------------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~ 134 (228)
T 4i17_A 73 ------------------YNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIE 134 (228)
T ss_dssp ------------------CSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ------------------cchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHH
Confidence 45678999999999999999999999999999999998 6 789999999999999
Q ss_pred HHHHHHHHHHhC
Q 024858 174 EARSVLEDVLYG 185 (261)
Q Consensus 174 eA~~~~~~~l~~ 185 (261)
+|+..|++++..
T Consensus 135 ~A~~~~~~al~~ 146 (228)
T 4i17_A 135 KAEENYKHATDV 146 (228)
T ss_dssp HHHHHHHHHTTS
T ss_pred HHHHHHHHHHhc
Confidence 999999999997
No 53
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.80 E-value=6.4e-18 Score=157.61 Aligned_cols=232 Identities=11% Similarity=0.012 Sum_probs=182.4
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHH
Q 024858 3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ 82 (261)
Q Consensus 3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA 82 (261)
....|++++|+.+|++++..+|++..++..++.++.+.|++++|+..+++++...|++ ....+.++.+|.+.|++++|
T Consensus 315 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A 392 (597)
T 2xpi_A 315 LFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEK--AVTWLAVGIYYLCVNKISEA 392 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS--HHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCccc--HHHHHHHHHHHHHhccHHHH
Confidence 4568999999999999999999999999999999999999999999999999999984 34566799999999999999
Q ss_pred HHHHHHHHHhhcchh-hhcCcchHHHhhch------hhhh--hhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 024858 83 IEMLKRKLRLIYQGE-AFNGKPTKTARSHG------KKFQ--VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMID 153 (261)
Q Consensus 83 ~~~~~~al~l~~~~~-~~~~~~~~~~~~~~------~~~~--~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~ 153 (261)
++.|++++++.|... .++. ........+ ..+. +.+.|++..++.++|.+|...|++++|+..|+++++.+
T Consensus 393 ~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 471 (597)
T 2xpi_A 393 RRYFSKSSTMDPQFGPAWIG-FAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF 471 (597)
T ss_dssp HHHHHHHHHHCTTCHHHHHH-HHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999999865432 2221 001111111 1122 46788899999999999999999999999999999999
Q ss_pred CCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhCC---CCCCc--------------chhhHHHHHHHHHHHHhcCC-CCc
Q 024858 154 PDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGR---IPGCE--------------DGRTRKRAEELLLELESKQP-PPD 214 (261)
Q Consensus 154 P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~---~~~~~--------------~~~~~~~a~~~l~~l~~~~~-~~~ 214 (261)
|+++. +..+|.+|...|++++|+.+|++++... ..++. ..+.++.|.+.+..+....| ++.
T Consensus 472 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 551 (597)
T 2xpi_A 472 QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDAN 551 (597)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHH
T ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChH
Confidence 99998 9999999999999999999999998852 11121 24666778888877554444 455
Q ss_pred hhhhcccch-----hHHHHHHHHHHHHh
Q 024858 215 LSDLLGLNL-----EDEFVNGLEEMVRV 237 (261)
Q Consensus 215 ~~~~~~~~~-----~d~~~~~~~~~l~~ 237 (261)
+...+|..+ +++..+.|+..+..
T Consensus 552 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 552 VHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 555566555 47777777776643
No 54
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.79 E-value=1.6e-18 Score=148.80 Aligned_cols=155 Identities=12% Similarity=0.086 Sum_probs=142.1
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHH
Q 024858 3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ 82 (261)
Q Consensus 3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA 82 (261)
....|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|+++ .....+|.+|...|++++|
T Consensus 148 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A 225 (327)
T 3cv0_A 148 FAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDA--QLWNKLGATLANGNRPQEA 225 (327)
T ss_dssp TTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH--HHHHHHHHHHHHcCCHHHH
Confidence 55678899999999999999999999999999999999999999999999999999853 4566799999999999999
Q ss_pred HHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-------
Q 024858 83 IEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPD------- 155 (261)
Q Consensus 83 ~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~------- 155 (261)
+..|++++++. |+++.++.++|.+|..+|++++|+..|++++.++|+
T Consensus 226 ~~~~~~a~~~~--------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 279 (327)
T 3cv0_A 226 LDAYNRALDIN--------------------------PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGE 279 (327)
T ss_dssp HHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC----
T ss_pred HHHHHHHHHcC--------------------------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcccccccc
Confidence 99999999874 356778999999999999999999999999999999
Q ss_pred -----chh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 156 -----ANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 156 -----~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
+.. +.++|.++..+|++++|..++++++..
T Consensus 280 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 315 (327)
T 3cv0_A 280 ASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEP 315 (327)
T ss_dssp -CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHH
T ss_pred chhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 677 889999999999999999999877664
No 55
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.79 E-value=4.6e-18 Score=146.66 Aligned_cols=163 Identities=13% Similarity=0.072 Sum_probs=135.6
Q ss_pred hhhcCCHHHHHHHHHHHHHcCC------ChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCch--h--HHHHHHHHHHH
Q 024858 3 QLVQKDPEAAIVLFWKAINAGD------RVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ--S--QESLDNVLIDL 72 (261)
Q Consensus 3 ~~~~~~~~~A~~~~~~al~~~p------~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~--~--~~~~~~~L~~l 72 (261)
....|++++|+..|.+++.+.+ ..+.++.++|.++..+|++++|+..|++++.+.|.. . .....+.+|.+
T Consensus 47 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~ 126 (292)
T 1qqe_A 47 YRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEI 126 (292)
T ss_dssp HHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3457999999999999998632 236789999999999999999999999999988742 1 12345669999
Q ss_pred HHHc-CCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 024858 73 YKKC-GKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQM 151 (261)
Q Consensus 73 y~~~-g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~ 151 (261)
|... |++++|+..|++++++.|... ... ....++.++|.+|..+|++++|+.+|++++.
T Consensus 127 ~~~~lg~~~~A~~~~~~Al~~~~~~~--------------~~~------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 186 (292)
T 1qqe_A 127 LENDLHDYAKAIDCYELAGEWYAQDQ--------------SVA------LSNKCFIKCADLKALDGQYIEASDIYSKLIK 186 (292)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHTT--------------CHH------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHHHHHHHHHHhCC--------------ChH------HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 9996 999999999999999864110 000 0135789999999999999999999999999
Q ss_pred hCCCchh--------hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 152 IDPDANK--------ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 152 ~~P~~~~--------~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
+.|++.. +.++|.++..+|++++|+..|++++..
T Consensus 187 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 228 (292)
T 1qqe_A 187 SSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE 228 (292)
T ss_dssp TTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred HHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9998753 368999999999999999999999997
No 56
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.78 E-value=4.4e-17 Score=136.75 Aligned_cols=180 Identities=9% Similarity=-0.056 Sum_probs=142.4
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHH
Q 024858 3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ 82 (261)
Q Consensus 3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA 82 (261)
....|++++|+.+|++++..+|+++.++..+|.++...|++++|+..+++++..+|+++ .....+|.+|...|++++|
T Consensus 53 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~la~~~~~~g~~~~A 130 (275)
T 1xnf_A 53 YDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN--YAHLNRGIALYYGGRDKLA 130 (275)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT--HHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCcccc--HHHHHHHHHHHHhccHHHH
Confidence 45689999999999999999999999999999999999999999999999999999853 4566799999999999999
Q ss_pred HHHHHHHHHhhcchhhhc---CcchHHHhhc--hhhhh--hhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 024858 83 IEMLKRKLRLIYQGEAFN---GKPTKTARSH--GKKFQ--VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPD 155 (261)
Q Consensus 83 ~~~~~~al~l~~~~~~~~---~~~~~~~~~~--~~~~~--~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~ 155 (261)
+..|++++++.|...... +......... ...+. +...|++...+ +++.++...++.++|+..+++++...|+
T Consensus 131 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 209 (275)
T 1xnf_A 131 QDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTS 209 (275)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHH
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhccccc
Confidence 999999999866432111 0000000000 00111 33445554443 5788888889999999999999988875
Q ss_pred c----hh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 156 A----NK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 156 ~----~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
. .. +.++|.++..+|++++|+..|++++..
T Consensus 210 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 210 LAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 4 45 789999999999999999999999997
No 57
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.78 E-value=1.4e-18 Score=135.57 Aligned_cols=118 Identities=14% Similarity=-0.045 Sum_probs=72.9
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 024858 13 IVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRL 92 (261)
Q Consensus 13 ~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l 92 (261)
...|++++..+|++..++..+|.++...|++++|+..|++++..+|+++ ..+..+|.+|...|++++|+..|++++.+
T Consensus 7 ~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 7 GGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDS--RFFLGLGACRQAMGQYDLAIHSYSYGAVM 84 (148)
T ss_dssp CCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccH--HHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 3456666666666666666666666666666666666666666666532 23344666666666666666666666655
Q ss_pred hcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh
Q 024858 93 IYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK 158 (261)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~ 158 (261)
. |+++.+++++|.+|..+|++++|+..|+++++++|+++.
T Consensus 85 ~--------------------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 124 (148)
T 2vgx_A 85 D--------------------------IXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPE 124 (148)
T ss_dssp S--------------------------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGG
T ss_pred C--------------------------CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCc
Confidence 3 344556666666666666666666666666666666554
No 58
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.78 E-value=2.2e-17 Score=139.29 Aligned_cols=144 Identities=13% Similarity=0.043 Sum_probs=126.3
Q ss_pred HHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchh-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhh
Q 024858 20 INAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQS-QESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEA 98 (261)
Q Consensus 20 l~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~-~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~ 98 (261)
...+|..+++++.+|..+...|++++|+..|++++..+|++. .......+|.+|.+.|++++|+..|++++++.|..
T Consensus 8 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~-- 85 (261)
T 3qky_A 8 GRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQID-- 85 (261)
T ss_dssp ---CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCC--
Confidence 356789999999999999999999999999999999999842 13456679999999999999999999999986511
Q ss_pred hcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHhhCCCchh-h----------
Q 024858 99 FNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQ--------KTNFMAAEVVYQKAQMIDPDANK-A---------- 159 (261)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~--------~g~~~eA~~~~~~al~~~P~~~~-~---------- 159 (261)
|..+.+++++|.+|.. +|++++|+..|++++..+|++.. .
T Consensus 86 ---------------------~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~ 144 (261)
T 3qky_A 86 ---------------------PRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELR 144 (261)
T ss_dssp ---------------------TTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHH
T ss_pred ---------------------chhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHH
Confidence 2346789999999999 99999999999999999999875 5
Q ss_pred -------hhHHHHHHHcCCHHHHHHHHHHHHhCC
Q 024858 160 -------CNLGLCLIKRTRYNEARSVLEDVLYGR 186 (261)
Q Consensus 160 -------~~L~~~l~~~g~~~eA~~~~~~~l~~~ 186 (261)
+++|.+|..+|++++|+..|++++...
T Consensus 145 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 178 (261)
T 3qky_A 145 AKLARKQYEAARLYERRELYEAAAVTYEAVFDAY 178 (261)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 788999999999999999999999973
No 59
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.78 E-value=5.9e-18 Score=154.24 Aligned_cols=179 Identities=17% Similarity=0.072 Sum_probs=133.2
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHH
Q 024858 3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ 82 (261)
Q Consensus 3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA 82 (261)
....|++++|+.+|++++..+|. +.++..+|.++...|++++|+..+++++..+|++. .....+|.+|...|++++|
T Consensus 247 ~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A 323 (514)
T 2gw1_A 247 KFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNS--SVYYHRGQMNFILQNYDQA 323 (514)
T ss_dssp HHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCT--HHHHHHHHHHHHTTCTTHH
T ss_pred HHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCH--HHHHHHHHHHHHhCCHHHH
Confidence 45679999999999999999999 99999999999999999999999999999999853 3566799999999999999
Q ss_pred HHHHHHHHHhhcchh-hhcCcchHHHhhch------hhhh--hhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 024858 83 IEMLKRKLRLIYQGE-AFNGKPTKTARSHG------KKFQ--VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMID 153 (261)
Q Consensus 83 ~~~~~~al~l~~~~~-~~~~~~~~~~~~~~------~~~~--~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~ 153 (261)
+..|++++++.|... .+.. ........+ ..+. +.+.|+++.++.++|.+|..+|++++|+..|++++..+
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 402 (514)
T 2gw1_A 324 GKDFDKAKELDPENIFPYIQ-LACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELE 402 (514)
T ss_dssp HHHHHHHHHTCSSCSHHHHH-HHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChhhHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence 999999999865321 1100 000000000 0111 35566677777777777777777777777777777777
Q ss_pred CCch------h-hhhHHHHHHH---cCCHHHHHHHHHHHHhC
Q 024858 154 PDAN------K-ACNLGLCLIK---RTRYNEARSVLEDVLYG 185 (261)
Q Consensus 154 P~~~------~-~~~L~~~l~~---~g~~~eA~~~~~~~l~~ 185 (261)
|++. . +.++|.++.. .|++++|+..|++++..
T Consensus 403 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~ 444 (514)
T 2gw1_A 403 NKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL 444 (514)
T ss_dssp HTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH
T ss_pred hccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh
Confidence 7663 2 5667777777 77777777777777765
No 60
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.77 E-value=3.7e-19 Score=157.02 Aligned_cols=154 Identities=16% Similarity=0.105 Sum_probs=137.9
Q ss_pred cCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchh-------------HHHHHHHHHHH
Q 024858 6 QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQS-------------QESLDNVLIDL 72 (261)
Q Consensus 6 ~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~-------------~~~~~~~L~~l 72 (261)
.+++++|+..|++++..+|+.+.++.++|.++..+|++++|+..|++++.+.|++. ...+++.+|.+
T Consensus 126 L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 205 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC 205 (336)
T ss_dssp EEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 35566788888889999999999999999999999999999999999999999852 02456679999
Q ss_pred HHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 024858 73 YKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMI 152 (261)
Q Consensus 73 y~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~ 152 (261)
|.+.|++++|+..|++++++. |+++.+++++|.+|..+|++++|+..|++++++
T Consensus 206 ~~~~g~~~~A~~~~~~al~~~--------------------------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 259 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALELD--------------------------SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 259 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC--------------------------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 999999999999999999974 457789999999999999999999999999999
Q ss_pred CCCchh-hhhHHHHHHHcCCHHHH-HHHHHHHHhC
Q 024858 153 DPDANK-ACNLGLCLIKRTRYNEA-RSVLEDVLYG 185 (261)
Q Consensus 153 ~P~~~~-~~~L~~~l~~~g~~~eA-~~~~~~~l~~ 185 (261)
+|++.. +.+++.++..+|++++| ...|++++..
T Consensus 260 ~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 260 YPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999 99999999999999999 5677777763
No 61
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.77 E-value=3.1e-18 Score=133.55 Aligned_cols=134 Identities=16% Similarity=0.050 Sum_probs=111.2
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHH
Q 024858 47 IEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLL 126 (261)
Q Consensus 47 i~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~ 126 (261)
...+++++.++|++ ......+|.++...|++++|+..|++++.+. |+++.+|
T Consensus 7 ~~~~~~al~~~p~~--~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------------------------p~~~~~~ 58 (148)
T 2vgx_A 7 GGTIAMLNEISSDT--LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD--------------------------HYDSRFF 58 (148)
T ss_dssp CCSHHHHTTCCHHH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------TTCHHHH
T ss_pred hhhHHHHHcCCHhh--HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC--------------------------cccHHHH
Confidence 34678899999984 3455668999999999999999999999874 4678899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchhhHHHHHHHHHH
Q 024858 127 GNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELLLE 205 (261)
Q Consensus 127 ~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~a~~~l~~ 205 (261)
.++|.+|..+|++++|+..|++++.++|+++. ++++|.+|..+|++++|+..|++++...+.++.......++..++..
T Consensus 59 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~ 138 (148)
T 2vgx_A 59 LGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLEA 138 (148)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999 99999999999999999999999999743333333334556666655
Q ss_pred HHh
Q 024858 206 LES 208 (261)
Q Consensus 206 l~~ 208 (261)
+..
T Consensus 139 l~~ 141 (148)
T 2vgx_A 139 IKL 141 (148)
T ss_dssp C--
T ss_pred HHh
Confidence 543
No 62
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.77 E-value=1.2e-17 Score=126.67 Aligned_cols=112 Identities=15% Similarity=0.119 Sum_probs=98.0
Q ss_pred HHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHH
Q 024858 52 SFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAW 131 (261)
Q Consensus 52 ~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~ 131 (261)
++..++|+.+ .....+|..|.+.|++++|++.|++++++. |+++.++.++|.
T Consensus 4 r~a~inP~~a--~~~~~~G~~~~~~g~~~~A~~~~~~al~~~--------------------------p~~~~~~~~~~~ 55 (126)
T 4gco_A 4 RLAYINPELA--QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD--------------------------PENAILYSNRAA 55 (126)
T ss_dssp ---CCCHHHH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------TTCHHHHHHHHH
T ss_pred HHHHHCHHHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------------------------CCCHHHHHHHhh
Confidence 3455889843 345669999999999999999999999974 467889999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchh
Q 024858 132 AYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGR 194 (261)
Q Consensus 132 ~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~ 194 (261)
+|..+|++++|+..|+++++++|++.. ++++|.++..+|++++|+..|++++.. +|.+..
T Consensus 56 ~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l---~P~~~~ 116 (126)
T 4gco_A 56 CLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQV---DPSNEE 116 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHH
T ss_pred HHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---CcCCHH
Confidence 999999999999999999999999999 999999999999999999999999998 554443
No 63
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.77 E-value=1e-17 Score=137.40 Aligned_cols=131 Identities=12% Similarity=0.053 Sum_probs=113.3
Q ss_pred hHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHH----------------HHHHHHHcCCHHHHHHHHHHH
Q 024858 26 VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNV----------------LIDLYKKCGKVEEQIEMLKRK 89 (261)
Q Consensus 26 ~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~----------------L~~ly~~~g~~~eA~~~~~~a 89 (261)
.++.+...|..+...|++++|+..|++++..+|+++ ..... +|.+|.+.|++++|+..|+++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 80 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRT--EMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKEL 80 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHH--HHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh--HHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 356788899999999999999999999999999853 34555 899999999999999999999
Q ss_pred HHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHH
Q 024858 90 LRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIK 168 (261)
Q Consensus 90 l~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~ 168 (261)
+++. |+++.++.++|.+|..+|++++|+..|+++++++|+++. ++++|.+|..
T Consensus 81 l~~~--------------------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 81 LQKA--------------------------PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYL 134 (208)
T ss_dssp HHHC--------------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHC--------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 9974 467889999999999999999999999999999999999 9999999987
Q ss_pred cCC--HHHHHHHHHHHHh
Q 024858 169 RTR--YNEARSVLEDVLY 184 (261)
Q Consensus 169 ~g~--~~eA~~~~~~~l~ 184 (261)
+|+ .+++...|++++.
T Consensus 135 ~~~~~~~~~~~~~~~~~~ 152 (208)
T 3urz_A 135 TAEQEKKKLETDYKKLSS 152 (208)
T ss_dssp HHHHHHHHHHHHHC---C
T ss_pred HhHHHHHHHHHHHHHHhC
Confidence 764 4556677777654
No 64
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.76 E-value=9.3e-18 Score=141.05 Aligned_cols=182 Identities=8% Similarity=-0.020 Sum_probs=132.4
Q ss_pred chhhcCCHHHHHHHHHHHHHcC--CCh-HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCC
Q 024858 2 VQLVQKDPEAAIVLFWKAINAG--DRV-DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGK 78 (261)
Q Consensus 2 ~~~~~~~~~~A~~~~~~al~~~--p~~-~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~ 78 (261)
+....|++++|+..|++++... |.. ..++..+|.++...|++++|+..+++++..+|+++ .....+|.+|...|+
T Consensus 46 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~l~~~~~~~~~ 123 (272)
T 3u4t_A 46 CYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRL--DMYGQIGSYFYNKGN 123 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT--HHHHHHHHHHHHTTC
T ss_pred HHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccH--HHHHHHHHHHHHccC
Confidence 3567899999999999999933 222 55689999999999999999999999999999853 356679999999999
Q ss_pred HHHHHHHHHHHHHhhcchh-hhcCcchHHHh--hch---hhhh--hhcCCCcHHHHHHHHHHHHHcCC---HHHHHHHHH
Q 024858 79 VEEQIEMLKRKLRLIYQGE-AFNGKPTKTAR--SHG---KKFQ--VSVRQETSRLLGNLAWAYMQKTN---FMAAEVVYQ 147 (261)
Q Consensus 79 ~~eA~~~~~~al~l~~~~~-~~~~~~~~~~~--~~~---~~~~--~~l~p~~~~~~~~Lg~~~~~~g~---~~eA~~~~~ 147 (261)
+++|+..|++++++.|... .+......... ... ..+. +.+.|+++.++.++|.++..+|+ +++|+..|+
T Consensus 124 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 203 (272)
T 3u4t_A 124 FPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYE 203 (272)
T ss_dssp HHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHH
T ss_pred HHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHH
Confidence 9999999999999854321 11100000000 000 0111 46677777777788888877777 777888888
Q ss_pred HHHhhC---CCc-----hh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 148 KAQMID---PDA-----NK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 148 ~al~~~---P~~-----~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
+++++. |+. .. +..+|.+|...|++++|+.+|++++..
T Consensus 204 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 204 KLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL 250 (272)
T ss_dssp HHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 887775 442 13 556788888888888888888888776
No 65
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.76 E-value=2.1e-17 Score=138.45 Aligned_cols=164 Identities=21% Similarity=0.212 Sum_probs=135.6
Q ss_pred chhhcCCHHHHHHHHHHHHHc--------CCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc--------CCchhHHHH
Q 024858 2 VQLVQKDPEAAIVLFWKAINA--------GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGL--------CSKQSQESL 65 (261)
Q Consensus 2 ~~~~~~~~~~A~~~~~~al~~--------~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~--------~P~~~~~~~ 65 (261)
+....|++++|+.+|.+++.. +|....++..+|.++..+|++++|+..+++++.. .|. ....
T Consensus 52 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~ 129 (283)
T 3edt_B 52 VYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPD--VAKQ 129 (283)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHH--HHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChH--HHHH
Confidence 345689999999999999976 4677889999999999999999999999999887 344 3445
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 024858 66 DNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVV 145 (261)
Q Consensus 66 ~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~ 145 (261)
...+|.+|...|++++|+..|++++++.... .+. -.|....++.++|.+|..+|++++|+.+
T Consensus 130 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-------------~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~ 191 (283)
T 3edt_B 130 LNNLALLCQNQGKAEEVEYYYRRALEIYATR-------------LGP-----DDPNVAKTKNNLASCYLKQGKYQDAETL 191 (283)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH-------------SCT-----TCHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-------------cCC-----CCHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 6779999999999999999999999973100 000 0123456899999999999999999999
Q ss_pred HHHHHhhC-------------------------------------------------CCchh-hhhHHHHHHHcCCHHHH
Q 024858 146 YQKAQMID-------------------------------------------------PDANK-ACNLGLCLIKRTRYNEA 175 (261)
Q Consensus 146 ~~~al~~~-------------------------------------------------P~~~~-~~~L~~~l~~~g~~~eA 175 (261)
|++++++. |+... +.+||.+|..+|++++|
T Consensus 192 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 271 (283)
T 3edt_B 192 YKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAA 271 (283)
T ss_dssp HHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHH
Confidence 99999872 33344 67899999999999999
Q ss_pred HHHHHHHHhC
Q 024858 176 RSVLEDVLYG 185 (261)
Q Consensus 176 ~~~~~~~l~~ 185 (261)
+.+|++++..
T Consensus 272 ~~~~~~al~~ 281 (283)
T 3edt_B 272 HTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHh
Confidence 9999999874
No 66
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.76 E-value=5.7e-18 Score=162.79 Aligned_cols=144 Identities=10% Similarity=-0.059 Sum_probs=127.7
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHH
Q 024858 3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ 82 (261)
Q Consensus 3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA 82 (261)
.+..|++++|+..|+++++.+|+++.++.++|.++..+|++++|++.|+++++++|+++ ...+.+|.+|.+.|++++
T Consensus 443 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~--~~~~~lg~~~~~~g~~~~- 519 (681)
T 2pzi_A 443 LLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGEL--APKLALAATAELAGNTDE- 519 (681)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCS--HHHHHHHHHHHHHTCCCT-
T ss_pred HHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh--HHHHHHHHHHHHcCChHH-
Confidence 45679999999999999999999999999999999999999999999999999999854 355669999999999999
Q ss_pred HHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhh
Q 024858 83 IEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACN 161 (261)
Q Consensus 83 ~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~ 161 (261)
++.|+++++++ |+++.+++++|.+|..+|++++|+..|+++++++|++.. +.+
T Consensus 520 ~~~~~~al~~~--------------------------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~ 573 (681)
T 2pzi_A 520 HKFYQTVWSTN--------------------------DGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLT 573 (681)
T ss_dssp TCHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHH
T ss_pred HHHHHHHHHhC--------------------------CchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHH
Confidence 99999999974 467889999999999999999999999999999999999 999
Q ss_pred HHHHHHHcCCHHHH
Q 024858 162 LGLCLIKRTRYNEA 175 (261)
Q Consensus 162 L~~~l~~~g~~~eA 175 (261)
+|.++...|+.+++
T Consensus 574 ~~~~~~~~~~~~~~ 587 (681)
T 2pzi_A 574 SAVTLLSGRSTSEV 587 (681)
T ss_dssp HHHHTC-------C
T ss_pred HHHHHHccCCCCCC
Confidence 99999887774443
No 67
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.76 E-value=1.6e-17 Score=144.09 Aligned_cols=175 Identities=6% Similarity=-0.023 Sum_probs=128.8
Q ss_pred HHHHHHHHHHHH-cCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 024858 10 EAAIVLFWKAIN-AGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKR 88 (261)
Q Consensus 10 ~~A~~~~~~al~-~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~ 88 (261)
++|...|++|+. .+|++..+|..+|.++...|++++|++.|++++++.|.++.. ++..++.++.+.|++++|+..|++
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~-~~~~~~~~~~~~~~~~~A~~~~~~ 159 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTL-VYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHH-HHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccH-HHHHHHHHHHHhcCHHHHHHHHHH
Confidence 899999999999 799999999999999999999999999999999999985422 556688999999999999999999
Q ss_pred HHHhhcchh-hhcCcchHHHhhch------hhhh--hhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCC-
Q 024858 89 KLRLIYQGE-AFNGKPTKTARSHG------KKFQ--VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMI---DPD- 155 (261)
Q Consensus 89 al~l~~~~~-~~~~~~~~~~~~~~------~~~~--~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~---~P~- 155 (261)
+++..|... .+.+.........+ ..+. +.+.|+++.+|.++|.++..+|++++|...|++++.. +|+
T Consensus 160 a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~ 239 (308)
T 2ond_A 160 AREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEK 239 (308)
T ss_dssp HHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGG
T ss_pred HHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHH
Confidence 999755321 11100000000001 1111 4556777777777777777777777777777777774 443
Q ss_pred chh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 156 ANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 156 ~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
+.. |..++.++...|++++|..++++++..
T Consensus 240 ~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 240 SGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 444 667777777777777777777777775
No 68
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.75 E-value=1.3e-17 Score=139.74 Aligned_cols=164 Identities=24% Similarity=0.330 Sum_probs=135.4
Q ss_pred hhcCCHHHHHHHHHHHHH--------cCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcC-----Cch-hHHHHHHHH
Q 024858 4 LVQKDPEAAIVLFWKAIN--------AGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLC-----SKQ-SQESLDNVL 69 (261)
Q Consensus 4 ~~~~~~~~A~~~~~~al~--------~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~-----P~~-~~~~~~~~L 69 (261)
...|++++|+.+|++++. .+|..+.++..+|.++..+|++++|+..+++++.+. +++ ........+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 456888999999999997 336788899999999999999999999999998773 221 133456779
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 024858 70 IDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKA 149 (261)
Q Consensus 70 ~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~a 149 (261)
|.+|...|++++|+..|++++++... .. + .-.|....++.++|.+|..+|++++|+.+|+++
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~----------~~---~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 153 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREK----------VL---G-----KFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRA 153 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHH----------HH---C-----TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHH----------Hc---C-----CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999999999997320 00 0 001234568999999999999999999999999
Q ss_pred Hhh--------CCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 150 QMI--------DPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 150 l~~--------~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
+.+ +|.... +.++|.++..+|++++|+.++++++..
T Consensus 154 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 154 LEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999 666666 889999999999999999999999985
No 69
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.75 E-value=5.1e-17 Score=149.19 Aligned_cols=180 Identities=16% Similarity=0.106 Sum_probs=142.9
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHH
Q 024858 3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ 82 (261)
Q Consensus 3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA 82 (261)
....|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++..+|++. .....+|.+|...|++++|
T Consensus 286 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~la~~~~~~g~~~~A 363 (537)
T 3fp2_A 286 LADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENV--YPYIQLACLLYKQGKFTES 363 (537)
T ss_dssp TCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCS--HHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHH
Confidence 45678999999999999999999999999999999999999999999999999999853 3455689999999999999
Q ss_pred HHHHHHHHHhhcchh-hhcCcchHHHhhchh------hhh--hhcCCCcHH------HHHHHHHHHHHc----------C
Q 024858 83 IEMLKRKLRLIYQGE-AFNGKPTKTARSHGK------KFQ--VSVRQETSR------LLGNLAWAYMQK----------T 137 (261)
Q Consensus 83 ~~~~~~al~l~~~~~-~~~~~~~~~~~~~~~------~~~--~~l~p~~~~------~~~~Lg~~~~~~----------g 137 (261)
+..|++++++.|... .+.. ........+. .+. +.+.|+++. .+.++|.+|..+ |
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 442 (537)
T 3fp2_A 364 EAFFNETKLKFPTLPEVPTF-FAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEE 442 (537)
T ss_dssp HHHHHHHHHHCTTCTHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHH
T ss_pred HHHHHHHHHhCCCChHHHHH-HHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHh
Confidence 999999999865432 1110 0000001110 111 233333322 356778999999 9
Q ss_pred CHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 138 NFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 138 ~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
++++|+..|+++++.+|++.. +.++|.++..+|++++|+..|++++..
T Consensus 443 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 443 KFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 999999999999999999999 999999999999999999999999997
No 70
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.75 E-value=2.3e-17 Score=150.28 Aligned_cols=180 Identities=15% Similarity=0.107 Sum_probs=141.9
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHH
Q 024858 3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ 82 (261)
Q Consensus 3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA 82 (261)
....|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|++. .....+|.+|...|++++|
T Consensus 280 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A 357 (514)
T 2gw1_A 280 MADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENI--FPYIQLACLAYRENKFDDC 357 (514)
T ss_dssp HHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCS--HHHHHHHHHTTTTTCHHHH
T ss_pred HHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhH--HHHHHHHHHHHHcCCHHHH
Confidence 45678888888899988888888888888889999999999999999988888888743 3455688888888999999
Q ss_pred HHHHHHHHHhhcchh-hhcCcchHHHhhch------hhhh--hhcCCCcHH------HHHHHHHHHHH---cCCHHHHHH
Q 024858 83 IEMLKRKLRLIYQGE-AFNGKPTKTARSHG------KKFQ--VSVRQETSR------LLGNLAWAYMQ---KTNFMAAEV 144 (261)
Q Consensus 83 ~~~~~~al~l~~~~~-~~~~~~~~~~~~~~------~~~~--~~l~p~~~~------~~~~Lg~~~~~---~g~~~eA~~ 144 (261)
+..|+++++..|... .+.. ........+ ..+. +.+.|+++. ++.++|.+|.. .|++++|+.
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~-la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~ 436 (514)
T 2gw1_A 358 ETLFSEAKRKFPEAPEVPNF-FAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATN 436 (514)
T ss_dssp HHHHHHHHHHSTTCSHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHH
T ss_pred HHHHHHHHHHcccCHHHHHH-HHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHH
Confidence 999998888755321 1110 000000001 0111 344555544 99999999999 999999999
Q ss_pred HHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 145 VYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 145 ~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
.|++++..+|++.. +..+|.++..+|++++|+..|++++..
T Consensus 437 ~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 437 LLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 99999999999998 999999999999999999999999998
No 71
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.75 E-value=7.1e-18 Score=129.90 Aligned_cols=117 Identities=11% Similarity=-0.020 Sum_probs=63.7
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 024858 14 VLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLI 93 (261)
Q Consensus 14 ~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~ 93 (261)
..|++++..+|++..++..+|.++...|++++|+..|++++..+|+++ ..+..+|.+|...|++++|+..|++++++.
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 82 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDA--RYFLGLGACRQSLGLYEQALQSYSYGALMD 82 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccH--HHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 345555555566555666666666666666666666666666555532 233345555555666666666665555542
Q ss_pred cchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh
Q 024858 94 YQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK 158 (261)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~ 158 (261)
|+++.++.++|.+|..+|++++|+..|+++++++|+++.
T Consensus 83 --------------------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 121 (142)
T 2xcb_A 83 --------------------------INEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPA 121 (142)
T ss_dssp --------------------------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGG
T ss_pred --------------------------CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Confidence 234455555565665566666666666665555555544
No 72
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.74 E-value=2.6e-17 Score=126.71 Aligned_cols=133 Identities=14% Similarity=0.078 Sum_probs=109.0
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHH
Q 024858 48 EAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLG 127 (261)
Q Consensus 48 ~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~ 127 (261)
..+++++.++|++ ......+|.++...|++++|+..|++++.+. |+++.+|.
T Consensus 5 ~~l~~al~~~p~~--~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--------------------------p~~~~~~~ 56 (142)
T 2xcb_A 5 GTLAMLRGLSEDT--LEQLYALGFNQYQAGKWDDAQKIFQALCMLD--------------------------HYDARYFL 56 (142)
T ss_dssp ----CCTTCCHHH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------TTCHHHHH
T ss_pred hhHHHHHcCCHHH--HHHHHHHHHHHHHHccHHHHHHHHHHHHHhC--------------------------CccHHHHH
Confidence 4677788889984 3345568999999999999999999999874 46788999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchhhHHHHHHHHHHH
Q 024858 128 NLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELLLEL 206 (261)
Q Consensus 128 ~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~a~~~l~~l 206 (261)
++|.+|..+|++++|+..|++++.++|+++. ++++|.+|..+|++++|+..|++++...+.++.......++..++..+
T Consensus 57 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l 136 (142)
T 2xcb_A 57 GLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEAV 136 (142)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 999999999999999999999999997433333344445566666665
Q ss_pred Hh
Q 024858 207 ES 208 (261)
Q Consensus 207 ~~ 208 (261)
..
T Consensus 137 ~~ 138 (142)
T 2xcb_A 137 TA 138 (142)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 73
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.74 E-value=2.2e-16 Score=136.80 Aligned_cols=173 Identities=14% Similarity=0.034 Sum_probs=136.8
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHH-------cCCc-------HHHHHHHHHHHh-cCCchhHHHHHHHHHHHHH
Q 024858 10 EAAIVLFWKAINAGDRVDSALKDMAVVMKQ-------LDRS-------EEAIEAIKSFRG-LCSKQSQESLDNVLIDLYK 74 (261)
Q Consensus 10 ~~A~~~~~~al~~~p~~~~al~~Lg~~~~~-------~g~~-------~eAi~~~~~~~~-~~P~~~~~~~~~~L~~ly~ 74 (261)
++|+..|++++..+|.++++|..+|.++.+ .|++ ++|+..|++++. +.|++ ..++..++.++.
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~--~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN--MLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTC--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCccc--HHHHHHHHHHHH
Confidence 789999999999999999999999999874 5887 999999999999 79984 345667899999
Q ss_pred HcCCHHHHHHHHHHHHHhhcchh--hhcCcchHHHhhch------hhhh--hhcCCCcHHHHHHHHHHHH-HcCCHHHHH
Q 024858 75 KCGKVEEQIEMLKRKLRLIYQGE--AFNGKPTKTARSHG------KKFQ--VSVRQETSRLLGNLAWAYM-QKTNFMAAE 143 (261)
Q Consensus 75 ~~g~~~eA~~~~~~al~l~~~~~--~~~~~~~~~~~~~~------~~~~--~~l~p~~~~~~~~Lg~~~~-~~g~~~eA~ 143 (261)
..|++++|+..|++++++.|... ++... .......+ ..+. +.+.|....++...+.+.. .+|++++|.
T Consensus 111 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~-~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQY-MKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSSCTHHHHHHH-HHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred hcCCHHHHHHHHHHHHhccccCccHHHHHH-HHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999999865332 22210 01111111 1122 4566777777766665543 379999999
Q ss_pred HHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 144 VVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 144 ~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
..|+++++.+|+++. |.++|.++..+|++++|+.+|++++..
T Consensus 190 ~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 232 (308)
T 2ond_A 190 KIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 232 (308)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 999999999999988 889999999999999999999999985
No 74
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.74 E-value=3.2e-16 Score=142.14 Aligned_cols=184 Identities=14% Similarity=0.079 Sum_probs=130.7
Q ss_pred chhhcCCHHHHHHHHHHHHHc---------CCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCc-----h-hHHHHH
Q 024858 2 VQLVQKDPEAAIVLFWKAINA---------GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK-----Q-SQESLD 66 (261)
Q Consensus 2 ~~~~~~~~~~A~~~~~~al~~---------~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~-----~-~~~~~~ 66 (261)
+....|++++|+..|++|+++ +|....++.++|.+|..+|++++|+..+++++.+.|. . ......
T Consensus 60 ~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~ 139 (472)
T 4g1t_A 60 LKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELD 139 (472)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHH
Confidence 345689999999999999874 6778889999999999999999999999999876442 0 012233
Q ss_pred HHHHHHHHH--cCCHHHHHHHHHHHHHhhcchh-hhcC--cchHHHhhch---h---hhh--hhcCCCcHHHHHHHHHHH
Q 024858 67 NVLIDLYKK--CGKVEEQIEMLKRKLRLIYQGE-AFNG--KPTKTARSHG---K---KFQ--VSVRQETSRLLGNLAWAY 133 (261)
Q Consensus 67 ~~L~~ly~~--~g~~~eA~~~~~~al~l~~~~~-~~~~--~~~~~~~~~~---~---~~~--~~l~p~~~~~~~~Lg~~~ 133 (261)
..+|..+.. .+++++|+++|++++++.|... +..+ .........+ . .+. +.++|+++.++.++|..+
T Consensus 140 ~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~ 219 (472)
T 4g1t_A 140 CEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKL 219 (472)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHH
Confidence 445555544 4579999999999999976432 1111 0000000000 0 111 567788888888887666
Q ss_pred HH----cCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 134 MQ----KTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 134 ~~----~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
.. .|++++|+.+|++++.++|++.. +.++|.+|...|++++|+..|++++..
T Consensus 220 ~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 276 (472)
T 4g1t_A 220 HKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY 276 (472)
T ss_dssp HHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh
Confidence 44 46777888888888888888887 788888888888888888888888876
No 75
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.74 E-value=6.5e-17 Score=143.75 Aligned_cols=163 Identities=12% Similarity=0.070 Sum_probs=136.6
Q ss_pred hhhcCCHHHHHHHHHHHHHc------CCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCch-----hHHHHHHHHHH
Q 024858 3 QLVQKDPEAAIVLFWKAINA------GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ-----SQESLDNVLID 71 (261)
Q Consensus 3 ~~~~~~~~~A~~~~~~al~~------~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~-----~~~~~~~~L~~ 71 (261)
....|++++|+.+|++++.. ++..+.++..+|.++..+|++++|+..+++++.+.+.. ......+.+|.
T Consensus 113 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~ 192 (383)
T 3ulq_A 113 ELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFAT 192 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 45689999999999999986 23367889999999999999999999999999875531 12235677999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 024858 72 LYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQM 151 (261)
Q Consensus 72 ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~ 151 (261)
+|...|++++|+..|++++++.+.. +.. +....++.++|.+|..+|++++|+.+|++++.
T Consensus 193 ~~~~~g~~~~A~~~~~~al~~~~~~--------------~~~------~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 252 (383)
T 3ulq_A 193 NFLDLKQYEDAISHFQKAYSMAEAE--------------KQP------QLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIA 252 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHT--------------TCH------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHc--------------CCh------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999999985311 000 01245899999999999999999999999999
Q ss_pred -----hC-CCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 152 -----ID-PDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 152 -----~~-P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
.+ |.... +.++|.++..+|++++|+.++++++..
T Consensus 253 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 293 (383)
T 3ulq_A 253 VFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAY 293 (383)
T ss_dssp HHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 46 66666 889999999999999999999999985
No 76
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.73 E-value=1.2e-16 Score=137.70 Aligned_cols=126 Identities=15% Similarity=0.027 Sum_probs=93.9
Q ss_pred CCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchh-hhcCcchHHHhhchh------hhh--hhcCCCcHHHHH
Q 024858 57 CSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGE-AFNGKPTKTARSHGK------KFQ--VSVRQETSRLLG 127 (261)
Q Consensus 57 ~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~-~~~~~~~~~~~~~~~------~~~--~~l~p~~~~~~~ 127 (261)
.|++ ......+|..+...|++++|+..|++++++.|... +..+ ........++ .+. +.+.|+....+.
T Consensus 113 lp~~--~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~-la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~ 189 (287)
T 3qou_A 113 LPRE--EELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLL-LAETLIALNRSEDAEAVLXTIPLQDQDTRYQGL 189 (287)
T ss_dssp SCCH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHH-HHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHH
T ss_pred cCCc--hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHH-HHHHHHHCCCHHHHHHHHHhCchhhcchHHHHH
Confidence 4774 33455689999999999999999999999876432 2111 0011111111 111 356677777777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 128 NLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 128 ~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
+.+..+.++++.++|+..|++++..+|++.. +++||.+|..+|++++|+..|++++..
T Consensus 190 ~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~ 248 (287)
T 3qou_A 190 VAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRX 248 (287)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 7788888888888889999999999999998 899999999999999999999999997
No 77
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.73 E-value=9.8e-17 Score=136.59 Aligned_cols=165 Identities=25% Similarity=0.342 Sum_probs=137.8
Q ss_pred hhhcCCHHHHHHHHHHHHH--------cCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcC-----Cc-hhHHHHHHH
Q 024858 3 QLVQKDPEAAIVLFWKAIN--------AGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLC-----SK-QSQESLDNV 68 (261)
Q Consensus 3 ~~~~~~~~~A~~~~~~al~--------~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~-----P~-~~~~~~~~~ 68 (261)
....|++++|+.+|++++. .+|....++..+|.++...|++++|+..+++++... ++ .........
T Consensus 37 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 116 (311)
T 3nf1_A 37 YASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNN 116 (311)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 4678999999999999998 477888999999999999999999999999998873 21 113345677
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 024858 69 LIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQK 148 (261)
Q Consensus 69 L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~ 148 (261)
+|.+|...|++++|+..|++++++.... .+. -.|....++.++|.+|..+|++++|+.+|++
T Consensus 117 l~~~~~~~g~~~~A~~~~~~a~~~~~~~-------------~~~-----~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 178 (311)
T 3nf1_A 117 LAVLYGKRGKYKEAEPLCKRALEIREKV-------------LGK-----DHPDVAKQLNNLALLCQNQGKYEEVEYYYQR 178 (311)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHH-------------HCT-----TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHHHHHh-------------cCC-----CChHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999999999999999874100 000 0122456899999999999999999999999
Q ss_pred HHhh--------CCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 149 AQMI--------DPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 149 al~~--------~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
++.+ +|.... +.++|.++..+|++++|+.++++++..
T Consensus 179 a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 224 (311)
T 3nf1_A 179 ALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR 224 (311)
T ss_dssp HHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9998 666666 889999999999999999999999974
No 78
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.73 E-value=8.4e-16 Score=130.04 Aligned_cols=175 Identities=17% Similarity=0.111 Sum_probs=120.6
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH----cCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH---
Q 024858 3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQ----LDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKK--- 75 (261)
Q Consensus 3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~----~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~--- 75 (261)
....|++++|+.+|+++++ |+++.++..+|.++.. .|++++|+..|++++..+.. .....+|.+|..
T Consensus 16 ~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~----~a~~~lg~~~~~g~~ 89 (273)
T 1ouv_A 16 SYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYS----NGCHLLGNLYYSGQG 89 (273)
T ss_dssp HHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHTSS
T ss_pred HHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCH----HHHHHHHHHHhCCCC
Confidence 4567899999999999999 7788999999999999 99999999999999988622 345568999999
Q ss_pred -cCCHHHHHHHHHHHHHhhcchhhhc-CcchHH----Hhhch---hhhhhhcCCCcHHHHHHHHHHHHH----cCCHHHH
Q 024858 76 -CGKVEEQIEMLKRKLRLIYQGEAFN-GKPTKT----ARSHG---KKFQVSVRQETSRLLGNLAWAYMQ----KTNFMAA 142 (261)
Q Consensus 76 -~g~~~eA~~~~~~al~l~~~~~~~~-~~~~~~----~~~~~---~~~~~~l~p~~~~~~~~Lg~~~~~----~g~~~eA 142 (261)
.|++++|+..|+++++...+...++ +..... ..... ..+...++.+++.++.++|.+|.. .+++++|
T Consensus 90 ~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A 169 (273)
T 1ouv_A 90 VSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKA 169 (273)
T ss_dssp SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred cccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 9999999999999998742111111 000000 00000 011122333456666677777766 6677777
Q ss_pred HHHHHHHHhhCCCchh-hhhHHHHHHH----cCCHHHHHHHHHHHHhC
Q 024858 143 EVVYQKAQMIDPDANK-ACNLGLCLIK----RTRYNEARSVLEDVLYG 185 (261)
Q Consensus 143 ~~~~~~al~~~P~~~~-~~~L~~~l~~----~g~~~eA~~~~~~~l~~ 185 (261)
+.+|+++++.+ ++. +.+||.+|.. .+++++|+.+|++++..
T Consensus 170 ~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~ 215 (273)
T 1ouv_A 170 LASYDKACDLK--DSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL 215 (273)
T ss_dssp HHHHHHHHHTT--CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhC
Confidence 77777766652 344 6666777776 67777777777766664
No 79
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.73 E-value=9.9e-17 Score=145.50 Aligned_cols=228 Identities=13% Similarity=0.085 Sum_probs=158.6
Q ss_pred cCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH----cCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHH
Q 024858 6 QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQ----LDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEE 81 (261)
Q Consensus 6 ~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~----~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~e 81 (261)
.++.++|+..|+++++.+|+++.++..+|..+.. .|++++|+..+++++..+|+.+ .....+|.+|...|++++
T Consensus 188 ~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~--~~~~~lg~~~~~~~~~~~ 265 (472)
T 4g1t_A 188 WPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVT--DVLRSAAKFYRRKDEPDK 265 (472)
T ss_dssp SCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCH--HHHHHHHHHHHHTTCHHH
T ss_pred chHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHH--HHHHHHHHHHHHcCchHH
Confidence 5778889999999999999999999999987755 4678899999999999999853 455669999999999999
Q ss_pred HHHHHHHHHHhhcchh-hhc--CcchH-------------------HHhhch---hhhh--hhcCCCcHHHHHHHHHHHH
Q 024858 82 QIEMLKRKLRLIYQGE-AFN--GKPTK-------------------TARSHG---KKFQ--VSVRQETSRLLGNLAWAYM 134 (261)
Q Consensus 82 A~~~~~~al~l~~~~~-~~~--~~~~~-------------------~~~~~~---~~~~--~~l~p~~~~~~~~Lg~~~~ 134 (261)
|+..|++++++.|... ++. +.... ...... ..+. +.+.|++..++.++|.+|.
T Consensus 266 A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~ 345 (472)
T 4g1t_A 266 AIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHA 345 (472)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHH
Confidence 9999999999876432 211 10000 000000 0111 4778999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCchh----hhhHHHH-HHHcCCHHHHHHHHHHHHhCCCCCCcchhhHHHHHHHHHH-HHh
Q 024858 135 QKTNFMAAEVVYQKAQMIDPDANK----ACNLGLC-LIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELLLE-LES 208 (261)
Q Consensus 135 ~~g~~~eA~~~~~~al~~~P~~~~----~~~L~~~-l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~a~~~l~~-l~~ 208 (261)
.+|++++|+.+|++++.++|++.. +.++|.+ +...|++++|+..|++++...+......+....+..++.. +..
T Consensus 346 ~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~ 425 (472)
T 4g1t_A 346 LADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSK 425 (472)
T ss_dssp HTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999998763 3566654 4578999999999999999843222223333334444433 344
Q ss_pred cCCCCchhhhcccchh-----HHHHHHHHHHH
Q 024858 209 KQPPPDLSDLLGLNLE-----DEFVNGLEEMV 235 (261)
Q Consensus 209 ~~~~~~~~~~~~~~~~-----d~~~~~~~~~l 235 (261)
.+..+.+...+|..+. +.+++.|+..+
T Consensus 426 ~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kAL 457 (472)
T 4g1t_A 426 NGADSEALHVLAFLQELNEKMQQADEDSERGL 457 (472)
T ss_dssp CC-CTTHHHHHHHHHHHHHHCC----------
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4556788888888762 44555555544
No 80
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.72 E-value=8.3e-17 Score=137.02 Aligned_cols=165 Identities=21% Similarity=0.225 Sum_probs=135.8
Q ss_pred hhhcCCHHHHHHHHHHHHHc--------CCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcC-----Cc-hhHHHHHHH
Q 024858 3 QLVQKDPEAAIVLFWKAINA--------GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLC-----SK-QSQESLDNV 68 (261)
Q Consensus 3 ~~~~~~~~~A~~~~~~al~~--------~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~-----P~-~~~~~~~~~ 68 (261)
....|++++|+.+|++++.. +|....++..+|.++...|++++|+..+++++.+. ++ .........
T Consensus 79 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 158 (311)
T 3nf1_A 79 YRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNN 158 (311)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 45679999999999999976 46678889999999999999999999999998874 22 113345667
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 024858 69 LIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQK 148 (261)
Q Consensus 69 L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~ 148 (261)
+|.+|...|++++|+..|++++++..... +. -.|....++.++|.+|..+|++++|+..|++
T Consensus 159 la~~~~~~~~~~~A~~~~~~a~~~~~~~~-------------~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 220 (311)
T 3nf1_A 159 LALLCQNQGKYEEVEYYYQRALEIYQTKL-------------GP-----DDPNVAKTKNNLASCYLKQGKFKQAETLYKE 220 (311)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHTS-------------CT-----TCHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHh-------------CC-----CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999999999999999732000 00 0123456899999999999999999999999
Q ss_pred HHhh-------------------------------------------------CCCchh-hhhHHHHHHHcCCHHHHHHH
Q 024858 149 AQMI-------------------------------------------------DPDANK-ACNLGLCLIKRTRYNEARSV 178 (261)
Q Consensus 149 al~~-------------------------------------------------~P~~~~-~~~L~~~l~~~g~~~eA~~~ 178 (261)
++++ +|+... +.++|.+|..+|++++|+.+
T Consensus 221 al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 300 (311)
T 3nf1_A 221 ILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETL 300 (311)
T ss_dssp HHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9985 355556 78999999999999999999
Q ss_pred HHHHHhC
Q 024858 179 LEDVLYG 185 (261)
Q Consensus 179 ~~~~l~~ 185 (261)
|++++..
T Consensus 301 ~~~al~l 307 (311)
T 3nf1_A 301 EEAAMRS 307 (311)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999985
No 81
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.72 E-value=4.3e-16 Score=122.31 Aligned_cols=133 Identities=19% Similarity=0.178 Sum_probs=121.6
Q ss_pred ChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcch
Q 024858 25 RVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPT 104 (261)
Q Consensus 25 ~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~ 104 (261)
....++..+|.++...|++++|+..+++++...|+++ .....+|.+|...|++++|+..++++++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----------- 72 (186)
T 3as5_A 6 IRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDV--DVALHLGIAYVKTGAVDRGTELLERSLADA----------- 72 (186)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------
T ss_pred hhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccCh--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----------
Confidence 3466788899999999999999999999999999853 456678999999999999999999999874
Q ss_pred HHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHH
Q 024858 105 KTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVL 183 (261)
Q Consensus 105 ~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l 183 (261)
|+++.++.++|.++...|++++|+..|++++..+|++.. +..+|.++...|++++|+.++++++
T Consensus 73 ---------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 137 (186)
T 3as5_A 73 ---------------PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIAL 137 (186)
T ss_dssp ---------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ---------------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 346678999999999999999999999999999999998 9999999999999999999999999
Q ss_pred hC
Q 024858 184 YG 185 (261)
Q Consensus 184 ~~ 185 (261)
..
T Consensus 138 ~~ 139 (186)
T 3as5_A 138 GL 139 (186)
T ss_dssp HH
T ss_pred hc
Confidence 97
No 82
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.72 E-value=6e-16 Score=114.87 Aligned_cols=130 Identities=26% Similarity=0.271 Sum_probs=116.3
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHH
Q 024858 28 SALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTA 107 (261)
Q Consensus 28 ~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~ 107 (261)
.++..+|.++...|++++|+..+++++...|++. .....++.++...|++++|+..+++++...
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------------- 65 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSA--EAWYNLGNAYYKQGDYDEAIEYYQKALELD-------------- 65 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------------
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcch--hHHHHHHHHHHHhcCHHHHHHHHHHHHHHC--------------
Confidence 4678899999999999999999999999998743 345568999999999999999999998863
Q ss_pred hhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 108 RSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 108 ~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
|+++.++.++|.++...|++++|+..+++++...|++.. +..+|.++...|++++|...+++++..
T Consensus 66 ------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 66 ------------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp ------------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred ------------CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 345678899999999999999999999999999999988 889999999999999999999999886
No 83
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.72 E-value=1.5e-16 Score=141.43 Aligned_cols=163 Identities=17% Similarity=0.079 Sum_probs=137.1
Q ss_pred hhhcCCHHHHHHHHHHHHHcC------CChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCch-----hHHHHHHHHHH
Q 024858 3 QLVQKDPEAAIVLFWKAINAG------DRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ-----SQESLDNVLID 71 (261)
Q Consensus 3 ~~~~~~~~~A~~~~~~al~~~------p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~-----~~~~~~~~L~~ 71 (261)
....|++++|+..|++|+... |..+.++.++|.++..+|++++|+..+++++.+.+.. ......+.+|.
T Consensus 111 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~ 190 (378)
T 3q15_A 111 EFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAG 190 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHH
Confidence 457899999999999999752 3467789999999999999999999999998875531 12334567999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 024858 72 LYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQM 151 (261)
Q Consensus 72 ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~ 151 (261)
+|...|++++|++.|++++++.+. .+.. +....++.+||.+|..+|++++|+.+|++++.
T Consensus 191 ~y~~~~~~~~A~~~~~~al~~~~~--------------~~~~------~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~ 250 (378)
T 3q15_A 191 NYDDFKHYDKALPHLEAALELAMD--------------IQND------RFIAISLLNIANSYDRSGDDQMAVEHFQKAAK 250 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH--------------TTCH------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHH--------------cCCH------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999999997421 0000 01245899999999999999999999999999
Q ss_pred -----hCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 152 -----IDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 152 -----~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
.+|.... +.++|.++..+|++++|+.++++++..
T Consensus 251 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 290 (378)
T 3q15_A 251 VSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDH 290 (378)
T ss_dssp HHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 7788866 889999999999999999999999996
No 84
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.71 E-value=6.3e-16 Score=130.83 Aligned_cols=172 Identities=14% Similarity=0.083 Sum_probs=138.7
Q ss_pred cCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH----cCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH----cC
Q 024858 6 QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQ----LDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKK----CG 77 (261)
Q Consensus 6 ~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~----~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~----~g 77 (261)
.+++++|+.+|+++++.+ ++.++.++|.++.. .+++++|+..+++++..+.. .....+|.+|.. .|
T Consensus 55 ~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~----~a~~~lg~~~~~~~~~~~ 128 (273)
T 1ouv_A 55 EKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYA----EGCASLGGIYHDGKVVTR 128 (273)
T ss_dssp CCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHCSSSCC
T ss_pred CCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCc----cHHHHHHHHHHcCCCccc
Confidence 899999999999999985 78899999999999 99999999999999988522 345668999999 99
Q ss_pred CHHHHHHHHHHHHHhhcchhhhc-CcchHH----Hhhc---hhhhhhhcCCCcHHHHHHHHHHHHH----cCCHHHHHHH
Q 024858 78 KVEEQIEMLKRKLRLIYQGEAFN-GKPTKT----ARSH---GKKFQVSVRQETSRLLGNLAWAYMQ----KTNFMAAEVV 145 (261)
Q Consensus 78 ~~~eA~~~~~~al~l~~~~~~~~-~~~~~~----~~~~---~~~~~~~l~p~~~~~~~~Lg~~~~~----~g~~~eA~~~ 145 (261)
++++|+..|+++++..++...++ +..... .... ...+...++.+++.++.+||.+|.. .+++++|+..
T Consensus 129 ~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~ 208 (273)
T 1ouv_A 129 DFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALAR 208 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 99999999999999754322111 100000 0000 0112234455778999999999999 9999999999
Q ss_pred HHHHHhhCCCchh-hhhHHHHHHH----cCCHHHHHHHHHHHHhC
Q 024858 146 YQKAQMIDPDANK-ACNLGLCLIK----RTRYNEARSVLEDVLYG 185 (261)
Q Consensus 146 ~~~al~~~P~~~~-~~~L~~~l~~----~g~~~eA~~~~~~~l~~ 185 (261)
|+++++.+| +. +.+||.+|.. .+++++|+.+|++++..
T Consensus 209 ~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 209 YSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence 999999976 56 8899999999 99999999999999997
No 85
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.71 E-value=2.2e-16 Score=137.00 Aligned_cols=161 Identities=14% Similarity=0.184 Sum_probs=130.6
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCC------hHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCc--hh--HHHHHHHHHHH
Q 024858 3 QLVQKDPEAAIVLFWKAINAGDR------VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK--QS--QESLDNVLIDL 72 (261)
Q Consensus 3 ~~~~~~~~~A~~~~~~al~~~p~------~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~--~~--~~~~~~~L~~l 72 (261)
....|++++|+..|.+++.+.+. ...++.++|.++..+|++++|+..|++++.+.+. +. .....+.+|.+
T Consensus 46 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~ 125 (307)
T 2ifu_A 46 FKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKL 125 (307)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34568999999999999976442 3567899999999999999999999999887542 11 12345668999
Q ss_pred HHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 024858 73 YKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMI 152 (261)
Q Consensus 73 y~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~ 152 (261)
|.. |++++|+..|++++++.+.. +... ....++.++|.+|..+|++++|+.+|++++.+
T Consensus 126 ~~~-g~~~~A~~~~~~Al~~~~~~--------------~~~~------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 184 (307)
T 2ifu_A 126 MEP-LDLSKAVHLYQQAAAVFENE--------------ERLR------QAAELIGKASRLLVRQQKFDEAAASLQKEKSM 184 (307)
T ss_dssp HTT-TCHHHHHHHHHHHHHHHHHT--------------TCHH------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHc-CCHHHHHHHHHHHHHHHHhC--------------CChh------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 988 99999999999999985411 0000 02468999999999999999999999999998
Q ss_pred CCCch------h-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 153 DPDAN------K-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 153 ~P~~~------~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
.|++. . +.++|.++..+|++++|+..|++++ .
T Consensus 185 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~ 223 (307)
T 2ifu_A 185 YKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-S 223 (307)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-T
T ss_pred HHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-C
Confidence 76543 3 5688999999999999999999999 6
No 86
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.71 E-value=4.3e-16 Score=116.81 Aligned_cols=117 Identities=10% Similarity=-0.072 Sum_probs=94.8
Q ss_pred CChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcc
Q 024858 24 DRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKP 103 (261)
Q Consensus 24 p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~ 103 (261)
|..+..+..+|..+...|++++|+..|++++.++|+++ .+...+|.+|.+.|++++|+..|++++++.
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---------- 68 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDA--RGYSNRAAALAKLMSFPEAIADCNKAIEKD---------- 68 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCh--HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC----------
Confidence 44567788888888899999999999999888888843 355668888888999999999998888864
Q ss_pred hHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC------CCchh-hhhHHHHHHH
Q 024858 104 TKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMID------PDANK-ACNLGLCLIK 168 (261)
Q Consensus 104 ~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~------P~~~~-~~~L~~~l~~ 168 (261)
|+++.++.++|.+|..+|++++|+..|+++++++ |++.. +..++.+..+
T Consensus 69 ----------------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 69 ----------------PNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp ----------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred ----------------CCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence 4567788889999999999999999999999888 77777 6677766544
No 87
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.70 E-value=7.2e-16 Score=119.72 Aligned_cols=132 Identities=15% Similarity=0.007 Sum_probs=116.6
Q ss_pred hHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchH
Q 024858 26 VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTK 105 (261)
Q Consensus 26 ~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~ 105 (261)
.+..+..+|.++...|++++|+..+++++..+|+++ .....+|.+|...|++++|+..+++++++.
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~------------ 77 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNA--IYYGNRSLAYLRTECYGYALGDATRAIELD------------ 77 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCh--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------------
Confidence 456788999999999999999999999999999853 456668999999999999999999999874
Q ss_pred HHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhh--HHHHHHHcCCHHHHHHHHHHH
Q 024858 106 TARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACN--LGLCLIKRTRYNEARSVLEDV 182 (261)
Q Consensus 106 ~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~--L~~~l~~~g~~~eA~~~~~~~ 182 (261)
|+++.++.++|.+|..+|++++|+..|++++.++|++.. +.. ++..+...|++++|+..++++
T Consensus 78 --------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 78 --------------KKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp --------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 356789999999999999999999999999999999987 644 455588999999999999987
Q ss_pred HhC
Q 024858 183 LYG 185 (261)
Q Consensus 183 l~~ 185 (261)
...
T Consensus 144 ~~~ 146 (166)
T 1a17_A 144 RSV 146 (166)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 88
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.70 E-value=9.6e-17 Score=138.33 Aligned_cols=164 Identities=11% Similarity=0.021 Sum_probs=127.3
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCCh------HHHHHHHHHHHHHc-CCcHHHHHHHHHHHhcCCchh----HHHHHHHHHH
Q 024858 3 QLVQKDPEAAIVLFWKAINAGDRV------DSALKDMAVVMKQL-DRSEEAIEAIKSFRGLCSKQS----QESLDNVLID 71 (261)
Q Consensus 3 ~~~~~~~~~A~~~~~~al~~~p~~------~~al~~Lg~~~~~~-g~~~eAi~~~~~~~~~~P~~~----~~~~~~~L~~ 71 (261)
....|++++|+.+|++|+.+.|.. ..++.++|.++..+ |++++|+..|++++.+.|++. .....+.+|.
T Consensus 87 ~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~ 166 (292)
T 1qqe_A 87 FKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCAD 166 (292)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Confidence 456799999999999999876542 56899999999996 999999999999999988521 1234567899
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 024858 72 LYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQM 151 (261)
Q Consensus 72 ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~ 151 (261)
+|.++|++++|+..|++++++.|...... .....++.++|.+|..+|++++|+.+|++++.
T Consensus 167 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------------------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 167 LKALDGQYIEASDIYSKLIKSSMGNRLSQ-------------------WSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTSSCTTTG-------------------GGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHhCCHHHHHHHHHHHHHHHhcCCccc-------------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999999999999999854211000 01234789999999999999999999999999
Q ss_pred hCCCchh------hhhHHHHHH--HcCCHHHHHHHHHHHHhC
Q 024858 152 IDPDANK------ACNLGLCLI--KRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 152 ~~P~~~~------~~~L~~~l~--~~g~~~eA~~~~~~~l~~ 185 (261)
++|++.. ...|+.++. ..+++++|+..|++++..
T Consensus 228 l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l 269 (292)
T 1qqe_A 228 EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL 269 (292)
T ss_dssp C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCC
T ss_pred hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCcc
Confidence 9998764 234666665 467899999999888776
No 89
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.70 E-value=2e-15 Score=122.65 Aligned_cols=127 Identities=12% Similarity=0.072 Sum_probs=113.7
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHH
Q 024858 28 SALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTA 107 (261)
Q Consensus 28 ~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~ 107 (261)
..++++|.++...|++++|+..|++++ .|. ......+|.+|...|++++|+..|++++++.
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------------- 67 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ--DPH---SRICFNIGCMYTILKNMTEAEKAFTRSINRD-------------- 67 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS--SCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc--CCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------------
Confidence 346789999999999999999999985 443 2356669999999999999999999999874
Q ss_pred hhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch----------------h-hhhHHHHHHHcC
Q 024858 108 RSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN----------------K-ACNLGLCLIKRT 170 (261)
Q Consensus 108 ~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~----------------~-~~~L~~~l~~~g 170 (261)
|+++.++.++|.+|..+|++++|+..|++++++.|++. . ++++|.++..+|
T Consensus 68 ------------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 135 (213)
T 1hh8_A 68 ------------KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKE 135 (213)
T ss_dssp ------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTT
T ss_pred ------------ccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHcc
Confidence 35678999999999999999999999999999988876 7 889999999999
Q ss_pred CHHHHHHHHHHHHhC
Q 024858 171 RYNEARSVLEDVLYG 185 (261)
Q Consensus 171 ~~~eA~~~~~~~l~~ 185 (261)
++++|+..|++++..
T Consensus 136 ~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 136 EWKKAEEQLALATSM 150 (213)
T ss_dssp CHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHc
Confidence 999999999999997
No 90
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.70 E-value=7e-16 Score=115.19 Aligned_cols=122 Identities=16% Similarity=0.087 Sum_probs=110.6
Q ss_pred cCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcC
Q 024858 22 AGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNG 101 (261)
Q Consensus 22 ~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~ 101 (261)
..|..+.++..+|.++...|++++|+..+++++..+|++. .....+|.+|...|++++|+..+++++++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-------- 80 (133)
T 2lni_A 11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDA--KLYSNRAACYTKLLEFQLALKDCEECIQLE-------- 80 (133)
T ss_dssp SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCH--HHHHHHHHHHTTTTCHHHHHHHHHHHHHHC--------
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH--HHHHHHHHHHHHhccHHHHHHHHHHHHHhC--------
Confidence 4577899999999999999999999999999999999853 456669999999999999999999999874
Q ss_pred cchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCC
Q 024858 102 KPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTR 171 (261)
Q Consensus 102 ~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~ 171 (261)
|+++.++.++|.+|..+|++++|+..|++++.++|++.. +..++.++..+|+
T Consensus 81 ------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 81 ------------------PTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp ------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred ------------------CCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 356789999999999999999999999999999999998 8999999988775
No 91
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.69 E-value=1.9e-16 Score=125.54 Aligned_cols=120 Identities=17% Similarity=0.172 Sum_probs=75.7
Q ss_pred HHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhh
Q 024858 38 KQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVS 117 (261)
Q Consensus 38 ~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (261)
...|++++|+..+++++..+|+++ .....+|.+|...|++++|+..|++++++.
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~~--~~~~~lg~~~~~~~~~~~A~~~~~~al~~~------------------------ 74 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNS--EQWALLGEYYLWQNDYSNSLLAYRQALQLR------------------------ 74 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH------------------------
T ss_pred hhccCHHHHHHHHHHHHHhCCCcH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------------------------
Confidence 345666666666666666666632 234456666667777777777777766653
Q ss_pred cCCCcHHHHHHHHHH-HHHcCCH--HHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 118 VRQETSRLLGNLAWA-YMQKTNF--MAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 118 l~p~~~~~~~~Lg~~-~~~~g~~--~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
|+++.++.++|.+ +...|++ ++|+..|++++..+|++.. +.++|.++..+|++++|+..|++++..
T Consensus 75 --p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 75 --GENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp --CSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred --CCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 2345566667766 6666776 7777777777777776666 666777777777777777777777665
No 92
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.69 E-value=4.5e-16 Score=125.02 Aligned_cols=164 Identities=13% Similarity=0.015 Sum_probs=126.6
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCC----chhHHHHHHHHHHHHHHcCC
Q 024858 3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCS----KQSQESLDNVLIDLYKKCGK 78 (261)
Q Consensus 3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P----~~~~~~~~~~L~~ly~~~g~ 78 (261)
.+..|++++|...++......+....++..+|.++..+|++++|+..+++++.+.. ..........+|.+|...|+
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 46789999999966655554447889999999999999999999999999987422 11133456779999999999
Q ss_pred HHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc--
Q 024858 79 VEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDA-- 156 (261)
Q Consensus 79 ~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~-- 156 (261)
+++|+..+++++++.. ..+... +....++.++|.++..+|++++|+..+++++.+.+..
T Consensus 82 ~~~A~~~~~~al~~~~--------------~~~~~~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 142 (203)
T 3gw4_A 82 WDAARRCFLEERELLA--------------SLPEDP-----LAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADD 142 (203)
T ss_dssp HHHHHHHHHHHHHHHH--------------HSCCCH-----HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHH--------------HcCccH-----HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999732 001000 0124578999999999999999999999999864322
Q ss_pred h----h-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 157 N----K-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 157 ~----~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
. . +.++|.++..+|++++|+..+++++..
T Consensus 143 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 143 QVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 1 2 468999999999999999999999985
No 93
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.69 E-value=1.5e-16 Score=136.66 Aligned_cols=179 Identities=13% Similarity=0.069 Sum_probs=143.3
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHH
Q 024858 3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ 82 (261)
Q Consensus 3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA 82 (261)
....|++++|+..|++++..+|+++.++.++|.++..+|++++|+..+++++.++|+++ ...+.+|.+|...|++++|
T Consensus 14 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~lg~~~~~~g~~~~A 91 (281)
T 2c2l_A 14 LFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSV--KAHFFLGQCQLEMESYDEA 91 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCH--HHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHH
Confidence 45789999999999999999999999999999999999999999999999999999853 4566799999999999999
Q ss_pred HHHHHHHHHhhcchh-hhcCcchHHHhhc----hhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch
Q 024858 83 IEMLKRKLRLIYQGE-AFNGKPTKTARSH----GKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN 157 (261)
Q Consensus 83 ~~~~~~al~l~~~~~-~~~~~~~~~~~~~----~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~ 157 (261)
+..|++++++.|... .+........+.. .........|..+.+...++.++ .|++++|++.|+++++.+|++.
T Consensus 92 ~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A~~~~~~al~~~p~~~ 169 (281)
T 2c2l_A 92 IANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRLI--AAERERELEECQRNHEGHEDDG 169 (281)
T ss_dssp HHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHHHHHHTTTSGGGTTTSCHH
T ss_pred HHHHHHHHHhCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHHHHHHhhhccccchh
Confidence 999999999976432 1111000000000 00111244566777888888766 7999999999999999999998
Q ss_pred h-hhhHHHHHHHc-CCHHHHHHHHHHHHhC
Q 024858 158 K-ACNLGLCLIKR-TRYNEARSVLEDVLYG 185 (261)
Q Consensus 158 ~-~~~L~~~l~~~-g~~~eA~~~~~~~l~~ 185 (261)
. ...++..+.+. +++++|..+|.++...
T Consensus 170 ~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 170 HIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 8 77777777776 7899999999998874
No 94
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.69 E-value=1.5e-15 Score=130.63 Aligned_cols=164 Identities=13% Similarity=0.094 Sum_probs=131.4
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCChH------HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCch----hHHHHHHHHHHH
Q 024858 3 QLVQKDPEAAIVLFWKAINAGDRVD------SALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ----SQESLDNVLIDL 72 (261)
Q Consensus 3 ~~~~~~~~~A~~~~~~al~~~p~~~------~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~----~~~~~~~~L~~l 72 (261)
.+..|++++|+..|.++++..|... ..+..+|.++...|++++|+..+++++...+.. ......+.+|.+
T Consensus 85 ~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~ 164 (293)
T 2qfc_A 85 LCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANI 164 (293)
T ss_dssp HHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 3568999999999999999877643 335678999999999999999999999866531 113356779999
Q ss_pred HHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 024858 73 YKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMI 152 (261)
Q Consensus 73 y~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~ 152 (261)
|...|++++|+..|++++++.... +.... -...++.|+|.+|..+|++++|+.+|++++.+
T Consensus 165 y~~~~~~~~A~~~~~kal~~~~~~--------------~~~~~-----~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~ 225 (293)
T 2qfc_A 165 YAENGYLKKGIDLFEQILKQLEAL--------------HDNEE-----FDVKVRYNHAKALYLDSRYEESLYQVNKAIEI 225 (293)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHS--------------CCCHH-----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhc--------------Ccccc-----chHHHHHhHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 999999999999999999763200 00000 01258999999999999999999999999998
Q ss_pred CCCc------hh-hhhHHHHHHHcCCHHHH-HHHHHHHHhC
Q 024858 153 DPDA------NK-ACNLGLCLIKRTRYNEA-RSVLEDVLYG 185 (261)
Q Consensus 153 ~P~~------~~-~~~L~~~l~~~g~~~eA-~~~~~~~l~~ 185 (261)
.++. .. ++++|.+|..+|++++| ..+|++++..
T Consensus 226 ~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 226 SCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 6531 34 78999999999999999 7889999875
No 95
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.69 E-value=6.5e-16 Score=121.37 Aligned_cols=115 Identities=15% Similarity=0.119 Sum_probs=86.4
Q ss_pred CCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCc
Q 024858 23 GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGK 102 (261)
Q Consensus 23 ~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~ 102 (261)
++..+.++..+|.++...|++++|+..|++++.++|+++ .++..+|.+|...|++++|+..|++++++.
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------- 75 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANP--IYLSNRAAAYSASGQHEKAAEDAELATVVD--------- 75 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCH--HHHHHHHHHHHHccCHHHHHHHHHHHHHhC---------
Confidence 455667777888888888888888888888888888743 345557788888888888888888887763
Q ss_pred chHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHH
Q 024858 103 PTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLC 165 (261)
Q Consensus 103 ~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~ 165 (261)
|+++.++.++|.+|..+|++++|+..|+++++++|++.. +++.+..
T Consensus 76 -----------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 122 (164)
T 3sz7_A 76 -----------------PKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE 122 (164)
T ss_dssp -----------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred -----------------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 345677888888888888888888888888888888776 6655544
No 96
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.69 E-value=3.8e-16 Score=124.35 Aligned_cols=134 Identities=16% Similarity=0.098 Sum_probs=110.2
Q ss_pred CCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCc
Q 024858 23 GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGK 102 (261)
Q Consensus 23 ~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~ 102 (261)
+|...+.+..+|.++.+.|++++|+..|+++++.+|+++ .....+|.+|...|++++|+..|+++++..|
T Consensus 2 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~--~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-------- 71 (176)
T 2r5s_A 2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRG--DVKLAKADCLLETKQFELAQELLATIPLEYQ-------- 71 (176)
T ss_dssp ----CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSH--HHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--------
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH--HHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--------
Confidence 344455678899999999999999999999999999953 4566799999999999999999999887642
Q ss_pred chHHHhhchhhhhhhcCCCcHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHH
Q 024858 103 PTKTARSHGKKFQVSVRQETSRLLGNLAWAY-MQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLE 180 (261)
Q Consensus 103 ~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~-~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~ 180 (261)
++..+..++.+. ...+...+|+..|+++++++|+++. ++++|.++..+|++++|+..|+
T Consensus 72 -------------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~ 132 (176)
T 2r5s_A 72 -------------------DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLW 132 (176)
T ss_dssp -------------------CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -------------------ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 233444445443 3334555689999999999999999 9999999999999999999999
Q ss_pred HHHhC
Q 024858 181 DVLYG 185 (261)
Q Consensus 181 ~~l~~ 185 (261)
+++..
T Consensus 133 ~~l~~ 137 (176)
T 2r5s_A 133 NILKV 137 (176)
T ss_dssp HHHTT
T ss_pred HHHHh
Confidence 99997
No 97
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.69 E-value=7.6e-16 Score=122.09 Aligned_cols=127 Identities=17% Similarity=0.158 Sum_probs=112.6
Q ss_pred hhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHH-HHHcCCH--H
Q 024858 4 LVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDL-YKKCGKV--E 80 (261)
Q Consensus 4 ~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~l-y~~~g~~--~ 80 (261)
+..|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++.++|+++ .....+|.+ |...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENA--ELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCH--HHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH--HHHHHHHHHHHHhcCCcchH
Confidence 4578899999999999999999999999999999999999999999999999999853 355568888 8899999 9
Q ss_pred HHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh
Q 024858 81 EQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK 158 (261)
Q Consensus 81 eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~ 158 (261)
+|+..|++++++. |+++.++.++|.+|..+|++++|+..|++++.++|++..
T Consensus 99 ~A~~~~~~al~~~--------------------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 150 (177)
T 2e2e_A 99 QTRAMIDKALALD--------------------------SNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRIN 150 (177)
T ss_dssp HHHHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSC
T ss_pred HHHHHHHHHHHhC--------------------------CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCcc
Confidence 9999999999874 467899999999999999999999999999999999865
No 98
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.68 E-value=1.2e-15 Score=131.19 Aligned_cols=163 Identities=14% Similarity=0.112 Sum_probs=132.2
Q ss_pred hhcCCHHHHHHHHHHHHHcCCChHH------HHHHHHHHHHHcCCcHHHHHHHHHHHhcCCc--hh--HHHHHHHHHHHH
Q 024858 4 LVQKDPEAAIVLFWKAINAGDRVDS------ALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK--QS--QESLDNVLIDLY 73 (261)
Q Consensus 4 ~~~~~~~~A~~~~~~al~~~p~~~~------al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~--~~--~~~~~~~L~~ly 73 (261)
+..|++++|...|++++...+..+. .+..+|.++...|++++|+..+++++...+. +. .....+.+|.+|
T Consensus 86 ~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y 165 (293)
T 3u3w_A 86 CKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIY 165 (293)
T ss_dssp HHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence 5679999999999999987776554 3345899999999999999999999986553 11 123467799999
Q ss_pred HHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 024858 74 KKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMID 153 (261)
Q Consensus 74 ~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~ 153 (261)
...|++++|+..|+++++...... . ..+....++.|+|.+|..+|++++|+.++++++++.
T Consensus 166 ~~~g~~~~A~~~~~~al~~~~~~~-------------~------~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~ 226 (293)
T 3u3w_A 166 AENGYLKKGIDLFEQILKQLEALH-------------D------NEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEIS 226 (293)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHSS-------------C------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHhcc-------------c------chhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 999999999999999998632100 0 001235689999999999999999999999999987
Q ss_pred CCc------hh-hhhHHHHHHHcC-CHHHHHHHHHHHHhC
Q 024858 154 PDA------NK-ACNLGLCLIKRT-RYNEARSVLEDVLYG 185 (261)
Q Consensus 154 P~~------~~-~~~L~~~l~~~g-~~~eA~~~~~~~l~~ 185 (261)
++. .. ++++|.++..+| .+++|+..|++++..
T Consensus 227 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 227 CRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 544 45 789999999999 579999999999985
No 99
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.68 E-value=6.9e-16 Score=114.39 Aligned_cols=124 Identities=18% Similarity=0.175 Sum_probs=111.0
Q ss_pred HcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhc
Q 024858 21 NAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFN 100 (261)
Q Consensus 21 ~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~ 100 (261)
..+|..+.++..+|.++...|++++|+..+++++...|+++ .....+|.+|...|++++|+..+++++++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------- 76 (131)
T 2vyi_A 6 EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANA--VYFCNRAAAYSKLGNYAGAVQDCERAICID------- 76 (131)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------
T ss_pred hcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCH--HHHHHHHHHHHHhhchHHHHHHHHHHHhcC-------
Confidence 34567788899999999999999999999999999999853 355668999999999999999999999874
Q ss_pred CcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCH
Q 024858 101 GKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRY 172 (261)
Q Consensus 101 ~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~ 172 (261)
|+++.++.++|.+|..+|++++|+..|++++.++|++.. +..+|.++..+|++
T Consensus 77 -------------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 77 -------------------PAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp -------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred -------------------ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 356779999999999999999999999999999999998 89999999998875
No 100
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.68 E-value=6.5e-17 Score=131.03 Aligned_cols=153 Identities=15% Similarity=0.081 Sum_probs=116.8
Q ss_pred cCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhH--------------HHHHHHHHH
Q 024858 6 QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQ--------------ESLDNVLID 71 (261)
Q Consensus 6 ~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~--------------~~~~~~L~~ 71 (261)
.|++++|...+.......+..+..+..+|.++...|++++|+..|++++.+.|.++. ..+...+|.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 96 (198)
T 2fbn_A 17 LYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLAT 96 (198)
T ss_dssp -----CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 455666666666555555667788899999999999999999999999998887430 145566899
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 024858 72 LYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQM 151 (261)
Q Consensus 72 ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~ 151 (261)
+|...|++++|+..+++++++. |+++.++.++|.+|..+|++++|+..|++++.
T Consensus 97 ~~~~~~~~~~A~~~~~~al~~~--------------------------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 97 CYNKNKDYPKAIDHASKVLKID--------------------------KNNVKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS--------------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhC--------------------------cccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 9999999999999999998874 35677899999999999999999999999999
Q ss_pred hCCCchh-hhhHHHHHHHcCCHHHHH-HHHHHHHh
Q 024858 152 IDPDANK-ACNLGLCLIKRTRYNEAR-SVLEDVLY 184 (261)
Q Consensus 152 ~~P~~~~-~~~L~~~l~~~g~~~eA~-~~~~~~l~ 184 (261)
++|++.. +..++.++..+|+.+++. ..|.+++.
T Consensus 151 ~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 151 LNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HSTTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred HCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999998 889999999999888888 55666555
No 101
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.68 E-value=3.1e-15 Score=123.84 Aligned_cols=137 Identities=14% Similarity=0.060 Sum_probs=115.9
Q ss_pred hHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchh-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcch
Q 024858 26 VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQS-QESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPT 104 (261)
Q Consensus 26 ~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~-~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~ 104 (261)
.+.++..+|..+...|++++|+..|++++...|++. .......+|.+|.+.|++++|+..|+++++..|...
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~------- 75 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP------- 75 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT-------
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC-------
Confidence 456789999999999999999999999999999742 234566699999999999999999999999865211
Q ss_pred HHHhhchhhhhhhcCCCcHHHHHHHHHHHHH------------------cCCHHHHHHHHHHHHhhCCCchh-h------
Q 024858 105 KTARSHGKKFQVSVRQETSRLLGNLAWAYMQ------------------KTNFMAAEVVYQKAQMIDPDANK-A------ 159 (261)
Q Consensus 105 ~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~------------------~g~~~eA~~~~~~al~~~P~~~~-~------ 159 (261)
..+.+++.+|.+|.. +|++++|+..|+++++.+|++.. +
T Consensus 76 ----------------~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l 139 (225)
T 2yhc_A 76 ----------------NIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRL 139 (225)
T ss_dssp ----------------THHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHH
T ss_pred ----------------cHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHH
Confidence 123466777777665 78999999999999999999875 3
Q ss_pred -----------hhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 160 -----------CNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 160 -----------~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
..+|.+|.++|++++|+..|++++..
T Consensus 140 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~ 176 (225)
T 2yhc_A 140 VFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRD 176 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 57899999999999999999999997
No 102
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.68 E-value=2e-15 Score=112.03 Aligned_cols=126 Identities=26% Similarity=0.272 Sum_probs=114.1
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHH
Q 024858 3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ 82 (261)
Q Consensus 3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA 82 (261)
....|++++|+.+|++++..+|....++..+|.++...|++++|+..+++++...|++. .....++.+|...|++++|
T Consensus 11 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A 88 (136)
T 2fo7_A 11 YYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSA--EAWYNLGNAYYKQGDYDEA 88 (136)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHTTTCHHHH
T ss_pred HHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCch--HHHHHHHHHHHHhcCHHHH
Confidence 45679999999999999999999999999999999999999999999999999999843 3456689999999999999
Q ss_pred HHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 024858 83 IEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDA 156 (261)
Q Consensus 83 ~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~ 156 (261)
+..++++++.. |+++.++.++|.++..+|++++|+..|++++..+|++
T Consensus 89 ~~~~~~~~~~~--------------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 89 IEYYQKALELD--------------------------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp HHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHhC--------------------------CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 99999998864 3456789999999999999999999999999999974
No 103
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.68 E-value=3.9e-17 Score=149.96 Aligned_cols=152 Identities=14% Similarity=0.090 Sum_probs=129.6
Q ss_pred CCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchh-------------HHHHHHHHHHHH
Q 024858 7 KDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQS-------------QESLDNVLIDLY 73 (261)
Q Consensus 7 ~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~-------------~~~~~~~L~~ly 73 (261)
+++++|+..|.+++...|+.+.++.++|.++..+|++++|+..|++++.++|.+. ...+++.+|.+|
T Consensus 248 ~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~ 327 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCY 327 (457)
T ss_dssp EEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777888888888899999999999999999999999999999999999842 034566799999
Q ss_pred HHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 024858 74 KKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMID 153 (261)
Q Consensus 74 ~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~ 153 (261)
.++|++++|+..|++++++. |+++.+++++|.+|..+|++++|+..|+++++++
T Consensus 328 ~~~g~~~~A~~~~~~al~~~--------------------------p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~ 381 (457)
T 1kt0_A 328 LKLREYTKAVECCDKALGLD--------------------------SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 381 (457)
T ss_dssp HHTTCHHHHHHHHHHHHHHS--------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHhcCHHHHHHHHHHHHhcC--------------------------CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 99999999999999999974 4567899999999999999999999999999999
Q ss_pred CCchh-hhhHHHHHHHcCCHHHHHH-HHHHHHh
Q 024858 154 PDANK-ACNLGLCLIKRTRYNEARS-VLEDVLY 184 (261)
Q Consensus 154 P~~~~-~~~L~~~l~~~g~~~eA~~-~~~~~l~ 184 (261)
|++.. +.+++.++..+|++++|.. .|++++.
T Consensus 382 P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 382 PQNKAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99998 9999999999999999874 4555544
No 104
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.66 E-value=3e-15 Score=128.61 Aligned_cols=181 Identities=12% Similarity=0.001 Sum_probs=132.6
Q ss_pred hcCCHHHHHHHHHHHHHcCCChHHHHHHH-------HHHHHHcCCcHHHHHHHHHHHhcCCch--hH-------------
Q 024858 5 VQKDPEAAIVLFWKAINAGDRVDSALKDM-------AVVMKQLDRSEEAIEAIKSFRGLCSKQ--SQ------------- 62 (261)
Q Consensus 5 ~~~~~~~A~~~~~~al~~~p~~~~al~~L-------g~~~~~~g~~~eAi~~~~~~~~~~P~~--~~------------- 62 (261)
..+|+..|...|.+++..+|+..++|..+ +.++...+++.+++..+.+.+.+.|+. +.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~ 97 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYP 97 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccc
Confidence 57999999999999999999999999999 888888888888888888888877752 11
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhh-hc-CcchHHHhhch---hhhhhhcC-CCc---HHHHHHH
Q 024858 63 ----ESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEA-FN-GKPTKTARSHG---KKFQVSVR-QET---SRLLGNL 129 (261)
Q Consensus 63 ----~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~-~~-~~~~~~~~~~~---~~~~~~l~-p~~---~~~~~~L 129 (261)
..+...++.+|...|++++|.+.|+.++...|.... ++ +.......... ..+.-.+. |++ ..++++|
T Consensus 98 v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~L 177 (282)
T 4f3v_A 98 VTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAH 177 (282)
T ss_dssp CSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHH
T ss_pred cCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHH
Confidence 223344677788888888888888887665432111 11 00000000000 00110111 111 4589999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhC--CC-chh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 130 AWAYMQKTNFMAAEVVYQKAQMID--PD-ANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 130 g~~~~~~g~~~eA~~~~~~al~~~--P~-~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
|.++.++|++++|+..|++++.-. |. ... ++++|.++.++|+.++|...|++++..
T Consensus 178 G~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 178 GVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 999999999999999999998655 66 556 889999999999999999999999997
No 105
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.66 E-value=1.3e-15 Score=135.59 Aligned_cols=182 Identities=22% Similarity=0.199 Sum_probs=138.2
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCChH----HHHHHHHHHHHHcCCcHHHHHHHHHHHhc------CCchhHHHHHHHHHHH
Q 024858 3 QLVQKDPEAAIVLFWKAINAGDRVD----SALKDMAVVMKQLDRSEEAIEAIKSFRGL------CSKQSQESLDNVLIDL 72 (261)
Q Consensus 3 ~~~~~~~~~A~~~~~~al~~~p~~~----~al~~Lg~~~~~~g~~~eAi~~~~~~~~~------~P~~~~~~~~~~L~~l 72 (261)
.+..|++++|+.+|++++..+|+++ .++..+|.++...|++++|+..+++++.+ .|. .......+|.+
T Consensus 58 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--~~~~~~~l~~~ 135 (411)
T 4a1s_A 58 LCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLG--EAKSSGNLGNT 135 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH--HHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchH--HHHHHHHHHHH
Confidence 4568999999999999999999876 57899999999999999999999999877 233 33456779999
Q ss_pred HHHcCCHHHHHHHHHHHHHhhcc-----hh--hhc--Ccc-hHHHh----------------hchh---hhh--hhc---
Q 024858 73 YKKCGKVEEQIEMLKRKLRLIYQ-----GE--AFN--GKP-TKTAR----------------SHGK---KFQ--VSV--- 118 (261)
Q Consensus 73 y~~~g~~~eA~~~~~~al~l~~~-----~~--~~~--~~~-~~~~~----------------~~~~---~~~--~~l--- 118 (261)
|...|++++|+..|++++++.+. .. .+. +.. ..... .... .+. +.+
T Consensus 136 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~ 215 (411)
T 4a1s_A 136 LKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRD 215 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998421 11 111 100 00000 0010 011 111
Q ss_pred ---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch------h-hhhHHHHHHHcCCHHHHHHHHHHHHhCC
Q 024858 119 ---RQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN------K-ACNLGLCLIKRTRYNEARSVLEDVLYGR 186 (261)
Q Consensus 119 ---~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~------~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~ 186 (261)
.|....++.++|.+|..+|++++|+.+|++++.+.|+.. . +.++|.+|..+|++++|+.+|++++...
T Consensus 216 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 293 (411)
T 4a1s_A 216 LGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALA 293 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 133455888999999999999999999999999987543 2 4688999999999999999999999983
No 106
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.66 E-value=3.9e-15 Score=120.84 Aligned_cols=141 Identities=17% Similarity=0.105 Sum_probs=116.7
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHH
Q 024858 3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ 82 (261)
Q Consensus 3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA 82 (261)
....|++++|+..|++++ +| .+.++.++|.++..+|++++|+..+++++..+|+++ .....+|.+|...|++++|
T Consensus 16 ~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~lg~~~~~~~~~~~A 90 (213)
T 1hh8_A 16 AADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLA--VAYFQRGMLYYQTEKYDLA 90 (213)
T ss_dssp HHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch--HHHHHHHHHHHHcccHHHH
Confidence 456899999999999996 44 678999999999999999999999999999999853 4566799999999999999
Q ss_pred HHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh
Q 024858 83 IEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK 158 (261)
Q Consensus 83 ~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~ 158 (261)
+..|++++++.|....... ....+...|..+.++.++|.+|..+|++++|+..|+++++++|++..
T Consensus 91 ~~~~~~al~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 156 (213)
T 1hh8_A 91 IKDLKEALIQLRGNQLIDY----------KILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRH 156 (213)
T ss_dssp HHHHHHHHHTTTTCSEEEC----------GGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGG
T ss_pred HHHHHHHHHhCCCccHHHH----------HHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccccc
Confidence 9999999998653211000 00012344667789999999999999999999999999999998753
No 107
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.65 E-value=1.7e-15 Score=114.75 Aligned_cols=112 Identities=13% Similarity=0.078 Sum_probs=94.1
Q ss_pred ChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcch
Q 024858 25 RVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPT 104 (261)
Q Consensus 25 ~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~ 104 (261)
+.+.++.+||.++..+|++++|+..|++++.++|+++ ..++.+|.+|..+|++++|+..|++++++.|....
T Consensus 6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~--~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~------ 77 (127)
T 4gcn_A 6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNI--TFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRA------ 77 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC------
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccch------
Confidence 3456788999999999999999999999999999953 45667999999999999999999999998652110
Q ss_pred HHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch
Q 024858 105 KTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN 157 (261)
Q Consensus 105 ~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~ 157 (261)
.. +....++.++|.+|..+|++++|+..|++++..+|+..
T Consensus 78 -------~~------~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~~ 117 (127)
T 4gcn_A 78 -------DY------KLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPE 117 (127)
T ss_dssp -------CH------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCHH
T ss_pred -------hh------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCHH
Confidence 00 01245899999999999999999999999999998743
No 108
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.65 E-value=3e-15 Score=117.89 Aligned_cols=124 Identities=16% Similarity=0.009 Sum_probs=96.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 024858 66 DNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVV 145 (261)
Q Consensus 66 ~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~ 145 (261)
....|..+.+.|+|++|+..|+++|++.|.... . . .+...|.++.+|.|+|.++..+|++++|+..
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~-~-----------~--a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~ 79 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPP-E-----------E--AFDHAGFDAFCHAGLAEALAGLRSFDEALHS 79 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCT-T-----------S--CCCHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcc-h-----------h--hhhhccchHHHHHHHHHHHHHCCCHHHHHHH
Confidence 345788889999999999999999999763100 0 0 0011123456999999999999999999999
Q ss_pred HHHHHhh-------CCCchh-h----hhHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchhhHHHHHHHH
Q 024858 146 YQKAQMI-------DPDANK-A----CNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELL 203 (261)
Q Consensus 146 ~~~al~~-------~P~~~~-~----~~L~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~a~~~l 203 (261)
|.+||++ +|++.. | +++|.+|..+|++++|+..|++++...+.+..-.+...++....
T Consensus 80 ~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~ 149 (159)
T 2hr2_A 80 ADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVA 149 (159)
T ss_dssp HHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHH
T ss_pred HHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 9999999 999998 9 99999999999999999999999998433333334444444443
No 109
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.64 E-value=9.6e-15 Score=107.20 Aligned_cols=120 Identities=25% Similarity=0.243 Sum_probs=104.2
Q ss_pred CCCh-HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcC
Q 024858 23 GDRV-DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNG 101 (261)
Q Consensus 23 ~p~~-~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~ 101 (261)
+|.. ..++..+|.++...|++++|+..+++++...|++. .....++.+|...|++++|+..+++++++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-------- 73 (125)
T 1na0_A 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA--EAWYNLGNAYYKQGDYDEAIEYYQKALELD-------- 73 (125)
T ss_dssp ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------
T ss_pred CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcH--HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--------
Confidence 4544 77899999999999999999999999999999843 355668999999999999999999998863
Q ss_pred cchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcC
Q 024858 102 KPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRT 170 (261)
Q Consensus 102 ~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g 170 (261)
|+++.++.++|.+|...|++++|+..|++++..+|++.. +.++|.++..+|
T Consensus 74 ------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 74 ------------------PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp ------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred ------------------CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 345678999999999999999999999999999999998 889999987765
No 110
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.64 E-value=1.3e-14 Score=119.29 Aligned_cols=167 Identities=9% Similarity=-0.014 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcC----CHHHHHHHH
Q 024858 11 AAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCG----KVEEQIEML 86 (261)
Q Consensus 11 ~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g----~~~eA~~~~ 86 (261)
+|+.+|+++.+. .++.+++.||.++...+++++|+..|+++...+.. ...+.||.+|.. | ++++|+..|
T Consensus 4 eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~----~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDG----DALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCH----HHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCH----HHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 467788887764 66777888888888888888888888887765432 234457777776 6 788888888
Q ss_pred HHHHHhhcchhhhc-CcchHH----Hhhch---hhhhhhcCCCc----HHHHHHHHHHHHH----cCCHHHHHHHHHHHH
Q 024858 87 KRKLRLIYQGEAFN-GKPTKT----ARSHG---KKFQVSVRQET----SRLLGNLAWAYMQ----KTNFMAAEVVYQKAQ 150 (261)
Q Consensus 87 ~~al~l~~~~~~~~-~~~~~~----~~~~~---~~~~~~l~p~~----~~~~~~Lg~~~~~----~g~~~eA~~~~~~al 150 (261)
+++.+...+...++ +..... ..... ..+...++.++ +.++++||.+|.. .+++++|+.+|++++
T Consensus 77 ~~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 77 EKAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HHHHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 88766432211111 000000 00000 01111222223 7788888888888 788888888888888
Q ss_pred hhCCCchh-hhhHHHHHHHc-C-----CHHHHHHHHHHHHhC
Q 024858 151 MIDPDANK-ACNLGLCLIKR-T-----RYNEARSVLEDVLYG 185 (261)
Q Consensus 151 ~~~P~~~~-~~~L~~~l~~~-g-----~~~eA~~~~~~~l~~ 185 (261)
+. |.++. .++||.+|... | ++++|+.+|+++...
T Consensus 157 ~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 157 SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 87 66666 77888888764 3 788888888888875
No 111
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.64 E-value=2.5e-17 Score=145.23 Aligned_cols=165 Identities=19% Similarity=0.100 Sum_probs=133.1
Q ss_pred cCCHHHHHHHHHH----HHHcCCChHHHHHHHHHHHH------------HcCCcHHHHHHHHHHHhcCCchhHHHHHHHH
Q 024858 6 QKDPEAAIVLFWK----AINAGDRVDSALKDMAVVMK------------QLDRSEEAIEAIKSFRGLCSKQSQESLDNVL 69 (261)
Q Consensus 6 ~~~~~~A~~~~~~----al~~~p~~~~al~~Lg~~~~------------~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L 69 (261)
.+.+++|+..+.. ++.++|.. ++...|.... .++++++|+..++.++...|++ ......+
T Consensus 78 ~~~~e~al~~~~~Ge~~~l~i~p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~--a~~~~~~ 153 (336)
T 1p5q_A 78 PYGLERAIQRMEKGEHSIVYLKPSY--AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQ--STIVKER 153 (336)
T ss_dssp CHHHHHHHTTCCTTCEEEEEECTTT--TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHH--HHHHHHH
T ss_pred chHHHHHHhcCCCCCeEEEEECCcc--ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHH--HHHHHHH
Confidence 3468888888888 88888886 5555665443 5678888999998888888874 3456679
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 024858 70 IDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKA 149 (261)
Q Consensus 70 ~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~a 149 (261)
|.+|.+.|++++|+..|++++++.|....... .....+.|....++.|+|.+|..+|++++|+..|+++
T Consensus 154 g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~-----------~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 222 (336)
T 1p5q_A 154 GTVYFKEGKYKQALLQYKKIVSWLEYESSFSN-----------EEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKA 222 (336)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCS-----------HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHhhccccCCh-----------HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999999999998653211000 0001122334679999999999999999999999999
Q ss_pred HhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 150 QMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 150 l~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
++++|++.. ++++|.+|..+|++++|+..|++++..
T Consensus 223 l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 259 (336)
T 1p5q_A 223 LELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 259 (336)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 999999999 999999999999999999999999998
No 112
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.64 E-value=8e-15 Score=109.76 Aligned_cols=95 Identities=17% Similarity=0.074 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 024858 65 LDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEV 144 (261)
Q Consensus 65 ~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~ 144 (261)
....+|..+.+.|++++|+..|++++++. |+++.++.++|.+|..+|++++|+.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~--------------------------p~~~~~~~~~a~~~~~~~~~~~A~~ 59 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA--------------------------PEDARGYSNRAAALAKLMSFPEAIA 59 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------------------------CCChHHHHHHHHHHHHhcCHHHHHH
Confidence 45568999999999999999999999974 4577899999999999999999999
Q ss_pred HHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 145 VYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 145 ~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
.|+++++++|++.. ++++|.++..+|++++|+..|++++..
T Consensus 60 ~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 60 DCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHh
Confidence 99999999999999 999999999999999999999999997
No 113
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.63 E-value=3e-15 Score=127.82 Aligned_cols=183 Identities=19% Similarity=0.202 Sum_probs=134.0
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCCh----HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCc----hhHHHHHHHHHHHHH
Q 024858 3 QLVQKDPEAAIVLFWKAINAGDRV----DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK----QSQESLDNVLIDLYK 74 (261)
Q Consensus 3 ~~~~~~~~~A~~~~~~al~~~p~~----~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~----~~~~~~~~~L~~ly~ 74 (261)
.+..|++++|+.+|++++..+|++ ..++..+|.++...|++++|+..+++++.+.+. .........+|.+|.
T Consensus 15 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 94 (338)
T 3ro2_A 15 LCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLK 94 (338)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHH
Confidence 467899999999999999999987 467889999999999999999999998876321 112345677999999
Q ss_pred HcCCHHHHHHHHHHHHHhhcchh-------hhc--Ccc-hHHHh-------------------hchh---hhh--hhc--
Q 024858 75 KCGKVEEQIEMLKRKLRLIYQGE-------AFN--GKP-TKTAR-------------------SHGK---KFQ--VSV-- 118 (261)
Q Consensus 75 ~~g~~~eA~~~~~~al~l~~~~~-------~~~--~~~-~~~~~-------------------~~~~---~~~--~~l-- 118 (261)
..|++++|+..+++++++.+... .+. +.. ..... .... .+. +.+
T Consensus 95 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~ 174 (338)
T 3ro2_A 95 VLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVT 174 (338)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999854211 111 000 00000 0000 010 111
Q ss_pred ----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch------h-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 119 ----RQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN------K-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 119 ----~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~------~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
.|....++.++|.+|..+|++++|+..|++++.+.|... . +.++|.++...|++++|+.++++++..
T Consensus 175 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 252 (338)
T 3ro2_A 175 ALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLL 252 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 233455788888888888999999999999888876432 2 457888888889999999999888887
No 114
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.63 E-value=3.4e-15 Score=131.68 Aligned_cols=184 Identities=18% Similarity=0.197 Sum_probs=140.1
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCCh----HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCc----hhHHHHHHHHHHHHH
Q 024858 3 QLVQKDPEAAIVLFWKAINAGDRV----DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK----QSQESLDNVLIDLYK 74 (261)
Q Consensus 3 ~~~~~~~~~A~~~~~~al~~~p~~----~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~----~~~~~~~~~L~~ly~ 74 (261)
.+..|++++|+.+|++++..+|++ ..++..+|.++...|++++|+..+++++.+.+. .........+|.+|.
T Consensus 19 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 98 (406)
T 3sf4_A 19 LCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLK 98 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 456899999999999999999987 467889999999999999999999998776321 112345677999999
Q ss_pred HcCCHHHHHHHHHHHHHhhcchh-------hhc--Ccc-hHHHh-------------------hchh---hhh--hhc--
Q 024858 75 KCGKVEEQIEMLKRKLRLIYQGE-------AFN--GKP-TKTAR-------------------SHGK---KFQ--VSV-- 118 (261)
Q Consensus 75 ~~g~~~eA~~~~~~al~l~~~~~-------~~~--~~~-~~~~~-------------------~~~~---~~~--~~l-- 118 (261)
..|++++|+..+++++++.+... .+. +.. ..... .... .+. +.+
T Consensus 99 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~ 178 (406)
T 3sf4_A 99 VLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVT 178 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999865321 111 100 00000 0010 011 111
Q ss_pred ----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch------h-hhhHHHHHHHcCCHHHHHHHHHHHHhCC
Q 024858 119 ----RQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN------K-ACNLGLCLIKRTRYNEARSVLEDVLYGR 186 (261)
Q Consensus 119 ----~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~------~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~ 186 (261)
.|....++.++|.+|..+|++++|+.+|++++++.|+.. . +.++|.++..+|++++|+.++++++...
T Consensus 179 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 257 (406)
T 3sf4_A 179 ALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLA 257 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 234456889999999999999999999999999976543 3 4689999999999999999999999983
No 115
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.63 E-value=9.3e-15 Score=136.88 Aligned_cols=133 Identities=14% Similarity=0.064 Sum_probs=122.1
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHH
Q 024858 3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ 82 (261)
Q Consensus 3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA 82 (261)
....|++++|+..|+++++.+|+++.++.++|.++..+|++++|++.++++++++|+++ .....+|.+|...|++++|
T Consensus 33 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~~A 110 (568)
T 2vsy_A 33 ELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHP--GIALWLGHALEDAGQAEAA 110 (568)
T ss_dssp HHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHcCCHHHH
Confidence 45679999999999999999999999999999999999999999999999999999853 4566799999999999999
Q ss_pred HHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhhCCCchh-
Q 024858 83 IEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQK---TNFMAAEVVYQKAQMIDPDANK- 158 (261)
Q Consensus 83 ~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~---g~~~eA~~~~~~al~~~P~~~~- 158 (261)
++.|++++++. |+++.++.++|.++..+ |++++|+..|+++++.+|++..
T Consensus 111 ~~~~~~al~~~--------------------------p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 164 (568)
T 2vsy_A 111 AAAYTRAHQLL--------------------------PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEP 164 (568)
T ss_dssp HHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSCH
T ss_pred HHHHHHHHHhC--------------------------CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcccCh
Confidence 99999999874 45678999999999999 9999999999999999999987
Q ss_pred hhhHH
Q 024858 159 ACNLG 163 (261)
Q Consensus 159 ~~~L~ 163 (261)
+..++
T Consensus 165 ~~~l~ 169 (568)
T 2vsy_A 165 FAFLS 169 (568)
T ss_dssp HHHTT
T ss_pred HHHhC
Confidence 66666
No 116
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.63 E-value=1.4e-15 Score=134.15 Aligned_cols=157 Identities=16% Similarity=0.087 Sum_probs=130.1
Q ss_pred HHHHHHHHHHHHHc------CCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCch----hHHHHHHHHHHHHHHcCC
Q 024858 9 PEAAIVLFWKAINA------GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ----SQESLDNVLIDLYKKCGK 78 (261)
Q Consensus 9 ~~~A~~~~~~al~~------~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~----~~~~~~~~L~~ly~~~g~ 78 (261)
+++|+.+|.+++.. .|....++.++|.++..+|++++|+..+++++.+.|.. ........+|.+|...|+
T Consensus 163 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 242 (406)
T 3sf4_A 163 LQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE 242 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 89999999999875 45567789999999999999999999999999876642 112355679999999999
Q ss_pred HHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc--
Q 024858 79 VEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDA-- 156 (261)
Q Consensus 79 ~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~-- 156 (261)
+++|+..|++++++.+.. +.. +....++.++|.+|..+|++++|+..|++++.+.+..
T Consensus 243 ~~~A~~~~~~al~~~~~~--------------~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 302 (406)
T 3sf4_A 243 FETASEYYKKTLLLARQL--------------KDR------AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELND 302 (406)
T ss_dssp HHHHHHHHHHHHHHHHHT--------------TCH------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHhC--------------cCc------hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999985411 000 0124688999999999999999999999999986543
Q ss_pred ----hh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 157 ----NK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 157 ----~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
.. +.++|.++..+|++++|+.++++++..
T Consensus 303 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 336 (406)
T 3sf4_A 303 RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 336 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34 678999999999999999999999986
No 117
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.63 E-value=6e-15 Score=111.41 Aligned_cols=106 Identities=13% Similarity=0.006 Sum_probs=77.2
Q ss_pred cCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcC
Q 024858 22 AGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNG 101 (261)
Q Consensus 22 ~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~ 101 (261)
.+|..+.++..+|.++...|++++|+..|++++..+|+++ .....+|.+|...|++++|+..+++++++.
T Consensus 4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-------- 73 (137)
T 3q49_B 4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVA--VYYTNRALCYLKMQQPEQALADCRRALELD-------- 73 (137)
T ss_dssp --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------
T ss_pred CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcH--HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------
Confidence 4566677777778888888888888888877777777742 345557777777777777777777777763
Q ss_pred cchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 024858 102 KPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPD 155 (261)
Q Consensus 102 ~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~ 155 (261)
|+++.++.++|.+|..+|++++|+..|++++.++|+
T Consensus 74 ------------------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 74 ------------------GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp ------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ------------------chhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 345667777777777777777777777777777776
No 118
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.62 E-value=4.9e-15 Score=112.22 Aligned_cols=95 Identities=16% Similarity=0.135 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 024858 65 LDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEV 144 (261)
Q Consensus 65 ~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~ 144 (261)
....||..|.++|+|++|+..|++++++. |+++.++.|+|.+|..+|++++|+.
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~--------------------------p~~~~~~~nlg~~~~~~~~~~~A~~ 63 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD--------------------------PSNITFYNNKAAVYFEEKKFAECVQ 63 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------------------------CCCHHHHHhHHHHHHHhhhHHHHHH
Confidence 34568999999999999999999999974 4677899999999999999999999
Q ss_pred HHHHHHhhCCCch-------h-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 145 VYQKAQMIDPDAN-------K-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 145 ~~~~al~~~P~~~-------~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
.|+++++++|++. . +.++|.++..+|++++|+..|++++..
T Consensus 64 ~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 64 FCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999998764 3 568999999999999999999999996
No 119
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.62 E-value=4.5e-15 Score=116.89 Aligned_cols=120 Identities=10% Similarity=-0.014 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCc-------hh---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcch
Q 024858 27 DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK-------QS---QESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQG 96 (261)
Q Consensus 27 ~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~-------~~---~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~ 96 (261)
+..+.+.|..+.+.|++++|+..|++++.++|+ +. ....+.++|.++.+.|++++|+..|+++|++..
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n-- 88 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN-- 88 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh--
Confidence 556888999999999999999999999999998 31 122566799999999999999999999999721
Q ss_pred hhhcCcchHHHhhchhhhhhhcCCCcHHHH----HHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHH
Q 024858 97 EAFNGKPTKTARSHGKKFQVSVRQETSRLL----GNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLC 165 (261)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~----~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~ 165 (261)
+ .++++|+++.+| +++|.++..+|+++||+..|+++++++|++.. .-.+..+
T Consensus 89 --------~---------~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~ 145 (159)
T 2hr2_A 89 --------R---------RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERM 145 (159)
T ss_dssp --------H---------HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHH
T ss_pred --------c---------cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 0 034567888999 99999999999999999999999999999886 5555444
No 120
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.62 E-value=3e-14 Score=111.75 Aligned_cols=98 Identities=18% Similarity=0.169 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHH
Q 024858 63 ESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAA 142 (261)
Q Consensus 63 ~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA 142 (261)
......+|.+|...|++++|+..|++++++. |+++.++.++|.+|..+|++++|
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------------------------p~~~~~~~~l~~~~~~~g~~~~A 64 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA--------------------------PANPIYLSNRAAAYSASGQHEKA 64 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------------------------TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------------------------CcCHHHHHHHHHHHHHccCHHHH
Confidence 3455669999999999999999999999974 45778999999999999999999
Q ss_pred HHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhCC
Q 024858 143 EVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGR 186 (261)
Q Consensus 143 ~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~ 186 (261)
+..|++++.++|++.. ++++|.+|..+|++++|+..|++++...
T Consensus 65 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 65 AEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 9999999999999999 9999999999999999999999999973
No 121
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.62 E-value=2.6e-15 Score=133.52 Aligned_cols=182 Identities=17% Similarity=0.150 Sum_probs=140.3
Q ss_pred hhhcCCHHHHHHHHHHHHHc------CCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCc----hhHHHHHHHHHHH
Q 024858 3 QLVQKDPEAAIVLFWKAINA------GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK----QSQESLDNVLIDL 72 (261)
Q Consensus 3 ~~~~~~~~~A~~~~~~al~~------~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~----~~~~~~~~~L~~l 72 (261)
....|++++|+.+|++++.. +|....++..+|.++..+|++++|+..+++++.+.+. .........+|.+
T Consensus 96 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 175 (411)
T 4a1s_A 96 YFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNV 175 (411)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Confidence 45679999999999999986 6778899999999999999999999999999887432 1123456779999
Q ss_pred HHHcCC-----------------HHHHHHHHHHHHHhhcch-----h--hhcCcchHHHhhchh------hhh--hhcCC
Q 024858 73 YKKCGK-----------------VEEQIEMLKRKLRLIYQG-----E--AFNGKPTKTARSHGK------KFQ--VSVRQ 120 (261)
Q Consensus 73 y~~~g~-----------------~~eA~~~~~~al~l~~~~-----~--~~~~~~~~~~~~~~~------~~~--~~l~p 120 (261)
|...|+ +++|+..|++++++.... . .+. .........+. .+. +.+.|
T Consensus 176 ~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~-~la~~~~~~g~~~~A~~~~~~al~~~~ 254 (411)
T 4a1s_A 176 YHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACG-NLGNTYYLLGDFQAAIEHHQERLRIAR 254 (411)
T ss_dssp HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH-HHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 999999 999999999999874211 0 110 00000000110 111 23323
Q ss_pred Cc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-------hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 121 ET------SRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-------ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 121 ~~------~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-------~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
+. ..++.++|.+|..+|++++|+..|++++.+.|+... +.++|.++..+|++++|+.++++++..
T Consensus 255 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 332 (411)
T 4a1s_A 255 EFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAI 332 (411)
T ss_dssp HHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 22 238899999999999999999999999999998873 357999999999999999999999997
No 122
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.61 E-value=5e-15 Score=111.29 Aligned_cols=91 Identities=15% Similarity=0.072 Sum_probs=60.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 024858 69 LIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQK 148 (261)
Q Consensus 69 L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~ 148 (261)
+|..+.+.|++++|+..|++++++. |+++.+|.++|.++..+|++++|+..|++
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~~--------------------------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 76 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQKE--------------------------PEREEAWRSLGLTQAENEKDGLAIIALNH 76 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS--------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC--------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5566666677777777776666653 34556666677777777777777777777
Q ss_pred HHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 149 AQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 149 al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
+++++|++.. +.+||.++..+|++++|+..|++++..
T Consensus 77 al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 77 ARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7777776666 666777777777777777777766665
No 123
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.61 E-value=6.6e-15 Score=115.30 Aligned_cols=31 Identities=19% Similarity=0.078 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc
Q 024858 26 VDSALKDMAVVMKQLDRSEEAIEAIKSFRGL 56 (261)
Q Consensus 26 ~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~ 56 (261)
.+..+..+|..+...|++++|+..|++++.+
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~ 40 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTR 40 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3456777777777777777777777777776
No 124
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.61 E-value=4.1e-14 Score=102.90 Aligned_cols=113 Identities=14% Similarity=0.062 Sum_probs=93.6
Q ss_pred hHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchH
Q 024858 26 VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTK 105 (261)
Q Consensus 26 ~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~ 105 (261)
.+.++..+|.++...|++++|+..+++++..+|+++ .....+|.+|...|++++|+..+++++++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------------ 68 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNH--VLYSNRSAAYAKKGDYQKAYEDGCKTVDLK------------ 68 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC------------
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcH--HHHHHHHHHHHhhccHHHHHHHHHHHHHhC------------
Confidence 456788889999999999999999999999888743 345568888889999999999999988863
Q ss_pred HHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHH
Q 024858 106 TARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCL 166 (261)
Q Consensus 106 ~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l 166 (261)
|+++.++.++|.++..+|++++|+..|+++++.+|++.. +..++.+.
T Consensus 69 --------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 69 --------------PDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp --------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred --------------cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 345678889999999999999999999999999998887 77777664
No 125
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.60 E-value=1.2e-14 Score=129.01 Aligned_cols=160 Identities=11% Similarity=-0.034 Sum_probs=128.9
Q ss_pred hhhcCCHHHHHHHHHHHHHc-------CCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCch----hHHHHHHHHHH
Q 024858 3 QLVQKDPEAAIVLFWKAINA-------GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ----SQESLDNVLID 71 (261)
Q Consensus 3 ~~~~~~~~~A~~~~~~al~~-------~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~----~~~~~~~~L~~ 71 (261)
....|++++|+.+|.+|+.. .+....++.++|.++..+|++++|+..+++++.+.|.. ........+|.
T Consensus 153 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~ 232 (383)
T 3ulq_A 153 YYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGL 232 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 45679999999999999985 33456789999999999999999999999999876531 11234566999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 024858 72 LYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQM 151 (261)
Q Consensus 72 ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~ 151 (261)
+|..+|++++|+..|++++++.... + -.|..+.++.++|.+|..+|++++|+.+|++++.
T Consensus 233 ~y~~~g~~~~A~~~~~~al~~~~~~--------------~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 292 (383)
T 3ulq_A 233 CKNSQSQYEDAIPYFKRAIAVFEES--------------N------ILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMA 292 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHT--------------T------CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHhh--------------c------cchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999999974210 0 0134567899999999999999999999999999
Q ss_pred hCC-----Cchh-hhhHHHHHHHcCC---HHHHHHHHHHH
Q 024858 152 IDP-----DANK-ACNLGLCLIKRTR---YNEARSVLEDV 182 (261)
Q Consensus 152 ~~P-----~~~~-~~~L~~~l~~~g~---~~eA~~~~~~~ 182 (261)
+.+ .... ...||.++...|+ +++|+.++++.
T Consensus 293 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~ 332 (383)
T 3ulq_A 293 YSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK 332 (383)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence 853 3333 4678999999999 77777777764
No 126
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.60 E-value=1.3e-14 Score=119.39 Aligned_cols=138 Identities=12% Similarity=-0.039 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhc-CcchHHH---hhch---hhhhh
Q 024858 44 EEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFN-GKPTKTA---RSHG---KKFQV 116 (261)
Q Consensus 44 ~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~-~~~~~~~---~~~~---~~~~~ 116 (261)
.+|+..|+++...+.. .....||.+|...|++++|+..|+++++...+...++ +...... .... ..+..
T Consensus 3 ~eA~~~~~~aa~~g~~----~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~ 78 (212)
T 3rjv_A 3 TEPGSQYQQQAEAGDR----RAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIRNPQQADYPQARQLAEK 78 (212)
T ss_dssp -CTTHHHHHHHHTTCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTSSTTSCCHHHHHHHHHH
T ss_pred chHHHHHHHHHHCCCH----HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 4688889988876322 3455689999999999999999999998743322211 1000000 0001 11224
Q ss_pred hcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCC--chh-hhhHHHHHHH----cCCHHHHHHHHHHHHhC
Q 024858 117 SVRQETSRLLGNLAWAYMQ----KTNFMAAEVVYQKAQMIDPD--ANK-ACNLGLCLIK----RTRYNEARSVLEDVLYG 185 (261)
Q Consensus 117 ~l~p~~~~~~~~Lg~~~~~----~g~~~eA~~~~~~al~~~P~--~~~-~~~L~~~l~~----~g~~~eA~~~~~~~l~~ 185 (261)
.++++++.++++||.+|.. .+++++|+.+|+++++..|. ++. +++||.+|.. .+++++|+.+|++++..
T Consensus 79 A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 158 (212)
T 3rjv_A 79 AVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL 158 (212)
T ss_dssp HHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Confidence 5678889999999999988 89999999999999999884 466 8899999999 88999999999999885
No 127
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.60 E-value=4.9e-15 Score=127.23 Aligned_cols=106 Identities=13% Similarity=0.012 Sum_probs=96.5
Q ss_pred CChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcc
Q 024858 24 DRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKP 103 (261)
Q Consensus 24 p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~ 103 (261)
|..+.++..+|.++...|++++|+..|++++..+|+++ .+...+|.+|...|++++|+..|++++++.
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~~~~~~A~~~~~~al~~~---------- 68 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVA--VYYTNRALCYLKMQQPEQALADCRRALELD---------- 68 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH--HHHHHHHHHHHHTTCHHHHHHHHHHHTTSC----------
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccH--HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC----------
Confidence 56788999999999999999999999999999999853 456679999999999999999999999874
Q ss_pred hHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch
Q 024858 104 TKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN 157 (261)
Q Consensus 104 ~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~ 157 (261)
|+++.+++++|.+|..+|++++|+..|+++++++|++.
T Consensus 69 ----------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 106 (281)
T 2c2l_A 69 ----------------GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR 106 (281)
T ss_dssp ----------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred ----------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch
Confidence 46778999999999999999999999999999999774
No 128
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.60 E-value=1.2e-14 Score=126.04 Aligned_cols=160 Identities=14% Similarity=0.101 Sum_probs=128.1
Q ss_pred hcCCHHHHHHHHHHHHHc--------CCChHH---HHHHHHHHHHHcCCcHHHHHHHHHHHhcCCch----hHHHHHHHH
Q 024858 5 VQKDPEAAIVLFWKAINA--------GDRVDS---ALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ----SQESLDNVL 69 (261)
Q Consensus 5 ~~~~~~~A~~~~~~al~~--------~p~~~~---al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~----~~~~~~~~L 69 (261)
..|++++|..+++++.+. .++... .+...|.++..+|++++|+..|.+++.+.+.. ......+.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~l 82 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQA 82 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 467889999999988762 344443 35567899999999999999999998886531 122345668
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 024858 70 IDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKA 149 (261)
Q Consensus 70 ~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~a 149 (261)
|.+|..+|++++|+..|++++++... .+... ....++.++|.+|.. |++++|+.+|++|
T Consensus 83 g~~~~~~g~~~~A~~~~~~Al~l~~~--------------~g~~~------~~a~~~~~lg~~~~~-g~~~~A~~~~~~A 141 (307)
T 2ifu_A 83 GMMLKDLQRMPEAVQYIEKASVMYVE--------------NGTPD------TAAMALDRAGKLMEP-LDLSKAVHLYQQA 141 (307)
T ss_dssp HHHHHHTTCGGGGHHHHHHHHHHHHT--------------TTCHH------HHHHHHHHHHHHHTT-TCHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHH--------------cCCHH------HHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Confidence 99999999999999999999998421 00000 124588999999999 9999999999999
Q ss_pred HhhCCCc------hh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 150 QMIDPDA------NK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 150 l~~~P~~------~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
+.+.|+. .. +.++|.+|..+|++++|+.+|++++..
T Consensus 142 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 184 (307)
T 2ifu_A 142 AAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSM 184 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9998754 34 679999999999999999999999985
No 129
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=4e-14 Score=107.61 Aligned_cols=122 Identities=12% Similarity=0.004 Sum_probs=103.4
Q ss_pred HcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchh-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhh
Q 024858 21 NAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQS-QESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAF 99 (261)
Q Consensus 21 ~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~-~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~ 99 (261)
..+|.....+..+|..+...|++++|+..|++++..+|++. .......+|.+|...|++++|+..+++++++.
T Consensus 22 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------ 95 (148)
T 2dba_A 22 TPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD------ 95 (148)
T ss_dssp CTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT------
T ss_pred ccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC------
Confidence 34577888999999999999999999999999999999731 13456668999999999999999999998874
Q ss_pred cCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHH
Q 024858 100 NGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIK 168 (261)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~ 168 (261)
|+++.++.++|.+|..+|++++|+..|++++.++|++.. +..++.+...
T Consensus 96 --------------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 96 --------------------GGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp --------------------SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred --------------------ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 356778999999999999999999999999999999988 7777766543
No 130
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.60 E-value=1.1e-14 Score=109.27 Aligned_cols=94 Identities=17% Similarity=0.022 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHH-------HHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcC
Q 024858 29 ALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLD-------NVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNG 101 (261)
Q Consensus 29 al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~-------~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~ 101 (261)
.+..+|.++.+.|++++|+..++++++ .. ..+|.+|...|++++|+..|++++++.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~---------~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-------- 81 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQ---------KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-------- 81 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHH---------HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHH---------HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------
Confidence 356677777777777777777766552 24 457777777777777777777777763
Q ss_pred cchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch
Q 024858 102 KPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN 157 (261)
Q Consensus 102 ~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~ 157 (261)
|+++.++.+||.+|..+|++++|+..|+++++++|++.
T Consensus 82 ------------------P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 82 ------------------PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp ------------------TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred ------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCC
Confidence 35667777777777777777777777777777777654
No 131
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.59 E-value=7.6e-15 Score=125.26 Aligned_cols=157 Identities=17% Similarity=0.091 Sum_probs=129.0
Q ss_pred HHHHHHHHHHHHHc------CCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCch----hHHHHHHHHHHHHHHcCC
Q 024858 9 PEAAIVLFWKAINA------GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ----SQESLDNVLIDLYKKCGK 78 (261)
Q Consensus 9 ~~~A~~~~~~al~~------~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~----~~~~~~~~L~~ly~~~g~ 78 (261)
+++|+.+|.+++.. .|....++..+|.++...|++++|+..+++++...|.. ........+|.+|...|+
T Consensus 159 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 238 (338)
T 3ro2_A 159 LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE 238 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCC
Confidence 88999999998864 34456789999999999999999999999998876641 112255678999999999
Q ss_pred HHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc--
Q 024858 79 VEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDA-- 156 (261)
Q Consensus 79 ~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~-- 156 (261)
+++|+..+++++.+.+.. +.. +....++.++|.+|..+|++++|+..|++++.+.|+.
T Consensus 239 ~~~A~~~~~~al~~~~~~--------------~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 298 (338)
T 3ro2_A 239 FETASEYYKKTLLLARQL--------------KDR------AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD 298 (338)
T ss_dssp HHHHHHHHHHHHHHHHHT--------------TCH------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhh--------------cch------hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999985311 000 0124588999999999999999999999999986643
Q ss_pred ----hh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 157 ----NK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 157 ----~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
.. +..+|.++..+|++++|..++++++..
T Consensus 299 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 299 RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 23 568999999999999999999999986
No 132
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.59 E-value=8.1e-14 Score=122.85 Aligned_cols=165 Identities=13% Similarity=0.007 Sum_probs=133.7
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCChH-----HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCch--h--HHHHHHHHHHHH
Q 024858 3 QLVQKDPEAAIVLFWKAINAGDRVD-----SALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ--S--QESLDNVLIDLY 73 (261)
Q Consensus 3 ~~~~~~~~~A~~~~~~al~~~p~~~-----~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~--~--~~~~~~~L~~ly 73 (261)
.+..|++++|..++++++...|... .++..+|.++...|++++|+..+++++.+.|.. . .....+.+|.+|
T Consensus 24 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 103 (373)
T 1hz4_A 24 AINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEIL 103 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 4568999999999999998766542 367889999999999999999999999876642 1 122346689999
Q ss_pred HHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 024858 74 KKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMID 153 (261)
Q Consensus 74 ~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~ 153 (261)
...|++++|+..|++++++.+.. +.. -.|....++.++|.+|..+|++++|+.++++++.+.
T Consensus 104 ~~~G~~~~A~~~~~~al~~~~~~--------------~~~----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 165 (373)
T 1hz4_A 104 FAQGFLQTAWETQEKAFQLINEQ--------------HLE----QLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVL 165 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHT--------------TCT----TSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHHHHHHHHHh--------------ccc----cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 99999999999999999974310 000 001234578899999999999999999999999998
Q ss_pred CCc-----hh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 154 PDA-----NK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 154 P~~-----~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
|.. .. +.++|.++...|++++|..++++++..
T Consensus 166 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~ 203 (373)
T 1hz4_A 166 SSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENL 203 (373)
T ss_dssp TTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 863 23 668999999999999999999999874
No 133
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.58 E-value=7.7e-14 Score=129.46 Aligned_cols=153 Identities=11% Similarity=0.022 Sum_probs=133.1
Q ss_pred cCCHH-------HHHHHHHHHHH-cCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcC
Q 024858 6 QKDPE-------AAIVLFWKAIN-AGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCG 77 (261)
Q Consensus 6 ~~~~~-------~A~~~~~~al~-~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g 77 (261)
.|+++ +|...|++|++ ..|+...++..+|.++...|++++|+..|++++...|.++ ..++..++.++.+.|
T Consensus 292 ~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~~~~~~~~~~~ 370 (530)
T 2ooe_A 292 KGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDP-TLVYIQYMKFARRAE 370 (530)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCH-HHHHHHHHHHHHHHH
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCc-hHHHHHHHHHHHHhc
Confidence 58876 89999999997 8999999999999999999999999999999999999753 235666888889999
Q ss_pred CHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhhCCCc
Q 024858 78 KVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWA-YMQKTNFMAAEVVYQKAQMIDPDA 156 (261)
Q Consensus 78 ~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~-~~~~g~~~eA~~~~~~al~~~P~~ 156 (261)
++++|..+|+++++..| ....++...+.+ +..+|++++|...|+++++.+|++
T Consensus 371 ~~~~A~~~~~~Al~~~~--------------------------~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~ 424 (530)
T 2ooe_A 371 GIKSGRMIFKKAREDAR--------------------------TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDI 424 (530)
T ss_dssp HHHHHHHHHHHHHTCTT--------------------------CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHhccC--------------------------CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCC
Confidence 99999999999998632 122344444444 457999999999999999999999
Q ss_pred hh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 157 NK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 157 ~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
+. |.+++.++.+.|++++|..+|++++..
T Consensus 425 ~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~ 454 (530)
T 2ooe_A 425 PEYVLAYIDYLSHLNEDNNTRVLFERVLTS 454 (530)
T ss_dssp HHHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence 99 999999999999999999999999997
No 134
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.58 E-value=7e-15 Score=118.95 Aligned_cols=149 Identities=15% Similarity=0.014 Sum_probs=99.7
Q ss_pred ChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcch
Q 024858 25 RVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPT 104 (261)
Q Consensus 25 ~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~ 104 (261)
+.+......+......|++++|.+.++......+.. ......+|..+...|++++|+..|++++++.|....+...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~-- 77 (198)
T 2fbn_A 2 GSSHHHHHHSSGRENLYFQGAKKSIYDYTDEEKVQS--AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQ-- 77 (198)
T ss_dssp --------------------CCCSGGGCCHHHHHHH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCH--
T ss_pred CCcccccchhhhhhhhhhccccCchhhCCHHHHHHH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchh--
Confidence 445556667888888899999988876554444442 2345568999999999999999999999986532111100
Q ss_pred HHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHH
Q 024858 105 KTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVL 183 (261)
Q Consensus 105 ~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l 183 (261)
.. ......+ ...++.++|.+|..+|++++|+..|++++.++|++.. ++++|.+|..+|++++|+..|++++
T Consensus 78 ~~-~~~~~~~-------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 149 (198)
T 2fbn_A 78 IL-LDKKKNI-------EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAA 149 (198)
T ss_dssp HH-HHHHHHH-------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hH-HHHHHHH-------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 00 0000000 1368999999999999999999999999999999999 9999999999999999999999999
Q ss_pred hC
Q 024858 184 YG 185 (261)
Q Consensus 184 ~~ 185 (261)
..
T Consensus 150 ~~ 151 (198)
T 2fbn_A 150 SL 151 (198)
T ss_dssp HH
T ss_pred HH
Confidence 97
No 135
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.58 E-value=1.1e-13 Score=122.76 Aligned_cols=158 Identities=11% Similarity=0.086 Sum_probs=120.0
Q ss_pred hhhcCCHHHHHHHHHHHHHcCC-------ChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCc----hhHHHHHHHHHH
Q 024858 3 QLVQKDPEAAIVLFWKAINAGD-------RVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK----QSQESLDNVLID 71 (261)
Q Consensus 3 ~~~~~~~~~A~~~~~~al~~~p-------~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~----~~~~~~~~~L~~ 71 (261)
....|+++.|+.+|.+|+...+ ....++.++|.++..+|++++|+..+++++.+.+. .......+.+|.
T Consensus 151 y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~ 230 (378)
T 3q15_A 151 YYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIAN 230 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4567999999999999997432 34678889999999999999999999999886432 112335567999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 024858 72 LYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQM 151 (261)
Q Consensus 72 ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~ 151 (261)
+|..+|++++|+..|++++++.... -.|..+.++.++|.+|..+|++++|+.+|+++++
T Consensus 231 ~y~~~~~~~~A~~~~~~al~~~~~~---------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 289 (378)
T 3q15_A 231 SYDRSGDDQMAVEHFQKAAKVSREK---------------------VPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLD 289 (378)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHH---------------------CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHhh---------------------CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999999963200 1133467899999999999999999999999999
Q ss_pred hCCC-----chh-hhhHHHHHHHcCC---HHHHHHHHHH
Q 024858 152 IDPD-----ANK-ACNLGLCLIKRTR---YNEARSVLED 181 (261)
Q Consensus 152 ~~P~-----~~~-~~~L~~~l~~~g~---~~eA~~~~~~ 181 (261)
+.+. ... ...++.++...|+ +.+|+.++++
T Consensus 290 ~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~ 328 (378)
T 3q15_A 290 HITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK 328 (378)
T ss_dssp HCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 8543 222 3345555555555 5555555544
No 136
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.57 E-value=6e-14 Score=108.69 Aligned_cols=123 Identities=11% Similarity=-0.021 Sum_probs=107.2
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHH
Q 024858 3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ 82 (261)
Q Consensus 3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA 82 (261)
.+..|++++|+..|.+++..+|.++.++..+|.++...|++++|+..+++++..+|+++ .....+|.+|...|++++|
T Consensus 23 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~~a~~~~~~~~~~~A 100 (166)
T 1a17_A 23 YFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYI--KGYYRRAASNMALGKFRAA 100 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH--HHHHHHHHHHHHhccHHHH
Confidence 45689999999999999999999999999999999999999999999999999999853 3556689999999999999
Q ss_pred HHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHH--HHHHHHHcCCHHHHHHHHHHHHhhC
Q 024858 83 IEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGN--LAWAYMQKTNFMAAEVVYQKAQMID 153 (261)
Q Consensus 83 ~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~--Lg~~~~~~g~~~eA~~~~~~al~~~ 153 (261)
+..|++++++.| +++.++.+ ++..+..+|++++|+..+.++..+.
T Consensus 101 ~~~~~~a~~~~p--------------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 147 (166)
T 1a17_A 101 LRDYETVVKVKP--------------------------HDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVV 147 (166)
T ss_dssp HHHHHHHHHHST--------------------------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC--------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHh
Confidence 999999998753 34556644 4555889999999999999987653
No 137
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.57 E-value=8.8e-16 Score=141.75 Aligned_cols=127 Identities=17% Similarity=0.075 Sum_probs=109.8
Q ss_pred hHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchH
Q 024858 26 VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTK 105 (261)
Q Consensus 26 ~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~ 105 (261)
.+.++..+|.++.++|++++|++.|+++++++|++ ......+|.+|.++|++++|+..|++++++.
T Consensus 5 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~------------ 70 (477)
T 1wao_1 5 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN--AIYYGNRSLAYLRTECYGYALGDATRAIELD------------ 70 (477)
T ss_dssp HHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC------------
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc--HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC------------
Confidence 45567778899999999999999999999999985 3456679999999999999999999999874
Q ss_pred HHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHH--HHHcCCHHHHHHHHH
Q 024858 106 TARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLC--LIKRTRYNEARSVLE 180 (261)
Q Consensus 106 ~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~--l~~~g~~~eA~~~~~ 180 (261)
|+++.++.++|.+|..+|++++|+..|+++++++|++.. +.+++.+ +.++|++++|+..++
T Consensus 71 --------------p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 71 --------------KKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp --------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred --------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 456789999999999999999999999999999999998 8888888 999999999999999
No 138
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.56 E-value=6.3e-15 Score=136.03 Aligned_cols=129 Identities=12% Similarity=-0.005 Sum_probs=111.1
Q ss_pred chhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHH
Q 024858 2 VQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEE 81 (261)
Q Consensus 2 ~~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~e 81 (261)
+.+..|++++|+.+|+++++.+|+++.++.++|.++.++|++++|++.++++++++|+++ ...+.+|.+|..+|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~--~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYI--KGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCH--HHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHH
Confidence 356789999999999999999999999999999999999999999999999999999853 355669999999999999
Q ss_pred HHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHH--HHHcCCHHHHHHHHH-----------H
Q 024858 82 QIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWA--YMQKTNFMAAEVVYQ-----------K 148 (261)
Q Consensus 82 A~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~--~~~~g~~~eA~~~~~-----------~ 148 (261)
|++.|++++++.| +++.++.++|.+ +..+|++++|+..|+ +
T Consensus 93 A~~~~~~al~~~p--------------------------~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 146 (477)
T 1wao_1 93 ALRDYETVVKVKP--------------------------HDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIE 146 (477)
T ss_dssp HHHHHHHHHHHST--------------------------TCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTS
T ss_pred HHHHHHHHHHhCC--------------------------CCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhh
Confidence 9999999999743 455688889888 899999999999999 9
Q ss_pred HHhhCCCchh
Q 024858 149 AQMIDPDANK 158 (261)
Q Consensus 149 al~~~P~~~~ 158 (261)
++.++|+...
T Consensus 147 al~~~~~~~~ 156 (477)
T 1wao_1 147 SMTIEDEYSG 156 (477)
T ss_dssp SCCCCTTCCS
T ss_pred hccccccccc
Confidence 9999887653
No 139
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.56 E-value=5.7e-14 Score=104.04 Aligned_cols=125 Identities=8% Similarity=0.062 Sum_probs=102.2
Q ss_pred CChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcc
Q 024858 24 DRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKP 103 (261)
Q Consensus 24 p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~ 103 (261)
|..+.++..+|.++...|++++|+..+++++..+|.++ .....+|.+|...|++++|+..|++++.+.|...
T Consensus 1 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~------ 72 (131)
T 1elr_A 1 GKQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNM--TYITNQAAVYFEKGDYNKCRELCEKAIEVGRENR------ 72 (131)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHST------
T ss_pred ChHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccH--HHHHHHHHHHHHhccHHHHHHHHHHHHhhccccc------
Confidence 34577899999999999999999999999999999853 4566799999999999999999999999854110
Q ss_pred hHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcC
Q 024858 104 TKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRT 170 (261)
Q Consensus 104 ~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g 170 (261)
... +..+.++.++|.+|..+|++++|+..|++++.++|+ +. ...++.+....+
T Consensus 73 -------~~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~ 126 (131)
T 1elr_A 73 -------EDY------RQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQQAEKILK 126 (131)
T ss_dssp -------TCH------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHH
T ss_pred -------hhH------HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHH
Confidence 000 001568999999999999999999999999999995 55 777777765443
No 140
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.56 E-value=7.7e-15 Score=129.43 Aligned_cols=137 Identities=14% Similarity=0.077 Sum_probs=89.6
Q ss_pred CCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhH---------------HHHHHHHHHHHHHcCCHHHHHHHHH
Q 024858 23 GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQ---------------ESLDNVLIDLYKKCGKVEEQIEMLK 87 (261)
Q Consensus 23 ~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~---------------~~~~~~L~~ly~~~g~~~eA~~~~~ 87 (261)
.+..+..+..+|..+...|++++|+..|++++.+.|++.. ..+++.+|.+|.+.|++++|+..|+
T Consensus 175 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~ 254 (338)
T 2if4_A 175 RIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCN 254 (338)
T ss_dssp HHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3456778999999999999999999999999999998431 0256678999999999999999999
Q ss_pred HHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHH-
Q 024858 88 RKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLC- 165 (261)
Q Consensus 88 ~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~- 165 (261)
+++++. |+++.+++++|.+|..+|++++|+..|+++++++|++.. +.+|+.+
T Consensus 255 ~al~~~--------------------------p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~ 308 (338)
T 2if4_A 255 IVLTEE--------------------------EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALA 308 (338)
T ss_dssp HHHHHC--------------------------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------
T ss_pred HHHHhC--------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 999874 456789999999999999999999999999999999998 8888888
Q ss_pred HHHcCCHHHHHHHHHHHHhC
Q 024858 166 LIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 166 l~~~g~~~eA~~~~~~~l~~ 185 (261)
....+..+++...|++++..
T Consensus 309 ~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 309 EQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHHhhCC
Confidence 45567888888999998886
No 141
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.55 E-value=2.4e-14 Score=103.34 Aligned_cols=67 Identities=12% Similarity=0.040 Sum_probs=31.5
Q ss_pred CChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 024858 24 DRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRL 92 (261)
Q Consensus 24 p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l 92 (261)
|+++.++..+|.++...|++++|+..+++++..+|.+. .....+|.+|...|++++|+..|++++++
T Consensus 3 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~~a~~~~~~~~~~~A~~~~~~a~~~ 69 (112)
T 2kck_A 3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEES--KYWLMKGKALYNLERYEEAVDCYNYVINV 69 (112)
T ss_dssp CSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCH--HHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 44444444455555555555555555555555444421 12233444444555555555555554443
No 142
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.55 E-value=1.9e-13 Score=106.90 Aligned_cols=113 Identities=15% Similarity=0.067 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 024858 65 LDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEV 144 (261)
Q Consensus 65 ~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~ 144 (261)
.....|..+.+.|++++|+..|++++.+.+...... .+. ......+.|....++.|+|.+|..+|++++|+.
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~-~~~-------~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~ 84 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILRE-KPG-------EPEWVELDRKNIPLYANMSQCYLNIGDLHEAEE 84 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTS-CTT-------SHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccC-CCC-------HHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 345588999999999999999999999843110000 000 000012345667899999999999999999999
Q ss_pred HHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 145 VYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 145 ~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
.+++++.++|+++. ++.+|.+|..+|++++|+..|++++..
T Consensus 85 ~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 85 TSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 99999999999999 999999999999999999999999998
No 143
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.55 E-value=1.4e-13 Score=102.72 Aligned_cols=104 Identities=12% Similarity=0.021 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHH
Q 024858 29 ALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQ-ESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTA 107 (261)
Q Consensus 29 al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~-~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~ 107 (261)
++..+|.++...|++++|+..+++++..+|++.. ......+|.+|...|++++|+..|+++++..|
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p------------- 70 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYP------------- 70 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------------
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCC-------------
Confidence 4566777777777777777777777777776321 12344567777777777777777777776543
Q ss_pred hhchhhhhhhcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh
Q 024858 108 RSHGKKFQVSVRQET---SRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK 158 (261)
Q Consensus 108 ~~~~~~~~~~l~p~~---~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~ 158 (261)
++ +.++.++|.+|..+|++++|+..|++++...|++..
T Consensus 71 -------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 111 (129)
T 2xev_A 71 -------------THDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDA 111 (129)
T ss_dssp -------------TSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHH
T ss_pred -------------CCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChH
Confidence 22 556777777777777777777777777777777665
No 144
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.55 E-value=2.9e-13 Score=125.58 Aligned_cols=172 Identities=12% Similarity=-0.009 Sum_probs=141.9
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHH-------cCCcH-------HHHHHHHHHHh-cCCchhHHHHHHHHHHHHH
Q 024858 10 EAAIVLFWKAINAGDRVDSALKDMAVVMKQ-------LDRSE-------EAIEAIKSFRG-LCSKQSQESLDNVLIDLYK 74 (261)
Q Consensus 10 ~~A~~~~~~al~~~p~~~~al~~Lg~~~~~-------~g~~~-------eAi~~~~~~~~-~~P~~~~~~~~~~L~~ly~ 74 (261)
.+++..|++++..+|.++++|..+|..+.+ .|+++ +|+..|+++++ ..|++ ..++..++.++.
T Consensus 255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~--~~l~~~~~~~~~ 332 (530)
T 2ooe_A 255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN--MLLYFAYADYEE 332 (530)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSC--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCccc--HHHHHHHHHHHH
Confidence 478889999999999999999999999986 79987 99999999997 89984 346667899999
Q ss_pred HcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 024858 75 KCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQET-SRLLGNLAWAYMQKTNFMAAEVVYQKAQMID 153 (261)
Q Consensus 75 ~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~-~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~ 153 (261)
+.|++++|..+|++++++.| ++ ..+|.++|.++.++|++++|...|++|++..
T Consensus 333 ~~g~~~~A~~~~~~al~~~p--------------------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~ 386 (530)
T 2ooe_A 333 SRMKYEKVHSIYNRLLAIED--------------------------IDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA 386 (530)
T ss_dssp HTTCHHHHHHHHHHHHHSSS--------------------------SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred hcCCHHHHHHHHHHHhCccc--------------------------cCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 99999999999999999743 33 3589999999999999999999999999998
Q ss_pred CCchh-hhhHHHH-HHHcCCHHHHHHHHHHHHhCCCCCCc----------chhhHHHHHHHHHHHHhc
Q 024858 154 PDANK-ACNLGLC-LIKRTRYNEARSVLEDVLYGRIPGCE----------DGRTRKRAEELLLELESK 209 (261)
Q Consensus 154 P~~~~-~~~L~~~-l~~~g~~~eA~~~~~~~l~~~~~~~~----------~~~~~~~a~~~l~~l~~~ 209 (261)
|.+.. +...+.+ +...|++++|..+|++++...+..+. ..+..++|..++......
T Consensus 387 ~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~ 454 (530)
T 2ooe_A 387 RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 454 (530)
T ss_dssp TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence 88766 5544443 45799999999999999997332211 235667788888776544
No 145
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.54 E-value=9.6e-14 Score=124.09 Aligned_cols=124 Identities=15% Similarity=0.055 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHh----------------cCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 024858 27 DSALKDMAVVMKQLDRSEEAIEAIKSFRG----------------LCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKL 90 (261)
Q Consensus 27 ~~al~~Lg~~~~~~g~~~eAi~~~~~~~~----------------~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al 90 (261)
+..+..+|..+...|++++|+..|+++++ ..|. ...+++.+|.+|.++|++++|+..|++++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~--~~~~~~nla~~~~~~g~~~~A~~~~~~al 300 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPV--ALSCVLNIGACKLKMSDWQGAVDSCLEAL 300 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHH--HHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 55688999999999999999999999998 5555 23456678999999999999999999998
Q ss_pred HhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHc
Q 024858 91 RLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKR 169 (261)
Q Consensus 91 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~ 169 (261)
++. |+++.+++++|.+|..+|++++|+..|++|++++|++.. +..|+.++..+
T Consensus 301 ~~~--------------------------p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~ 354 (370)
T 1ihg_A 301 EID--------------------------PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKI 354 (370)
T ss_dssp TTC--------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HhC--------------------------chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 874 456789999999999999999999999999999999998 88999999999
Q ss_pred CCHHHHHHH
Q 024858 170 TRYNEARSV 178 (261)
Q Consensus 170 g~~~eA~~~ 178 (261)
++++++...
T Consensus 355 ~~~~~a~k~ 363 (370)
T 1ihg_A 355 KAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 988888653
No 146
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.53 E-value=1.8e-14 Score=113.22 Aligned_cols=104 Identities=17% Similarity=0.096 Sum_probs=73.4
Q ss_pred CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 024858 8 DPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLK 87 (261)
Q Consensus 8 ~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~ 87 (261)
.+++|+..|+++++.+|+++++|.++|.++..+++++.+...+ +.+++|+..|+
T Consensus 17 ~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al--------------------------~~~~eAi~~le 70 (158)
T 1zu2_A 17 LFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAK--------------------------QMIQEAITKFE 70 (158)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHH--------------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhH--------------------------hHHHHHHHHHH
Confidence 4555666666666666666666666666665555444333221 12678999999
Q ss_pred HHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHhhCCCc
Q 024858 88 RKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKT-----------NFMAAEVVYQKAQMIDPDA 156 (261)
Q Consensus 88 ~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g-----------~~~eA~~~~~~al~~~P~~ 156 (261)
++|+++ |++++++++||.+|..+| ++++|+.+|++|++++|++
T Consensus 71 ~AL~ld--------------------------P~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~ 124 (158)
T 1zu2_A 71 EALLID--------------------------PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDN 124 (158)
T ss_dssp HHHHHC--------------------------TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHhC--------------------------cCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCC
Confidence 988874 467889999999998875 8999999999999999998
Q ss_pred hh-hhhHH
Q 024858 157 NK-ACNLG 163 (261)
Q Consensus 157 ~~-~~~L~ 163 (261)
.. +.++.
T Consensus 125 ~~y~~al~ 132 (158)
T 1zu2_A 125 THYLKSLE 132 (158)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 75 44433
No 147
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.53 E-value=7e-13 Score=115.57 Aligned_cols=150 Identities=11% Similarity=-0.022 Sum_probs=101.8
Q ss_pred CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcC--CcHHHHHHHHHHHhcCCchhHHHHHHHHHHHH----HHc---CC
Q 024858 8 DPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLD--RSEEAIEAIKSFRGLCSKQSQESLDNVLIDLY----KKC---GK 78 (261)
Q Consensus 8 ~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g--~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly----~~~---g~ 78 (261)
..++|+.++.++|.++|++..+|+.-+.++...| +++++++.++.++..+|++. .+++.-+.++ ... ++
T Consensus 48 ~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y--~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 48 YSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNY--QIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCC--HHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccH--HHHHHHHHHHHHHHHhccccCC
Confidence 3467999999999999999999999999999999 99999999999999999852 2333344444 566 89
Q ss_pred HHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHH--HHHHHHHHHHhhCCCc
Q 024858 79 VEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFM--AAEVVYQKAQMIDPDA 156 (261)
Q Consensus 79 ~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~--eA~~~~~~al~~~P~~ 156 (261)
++++++.+.++++++|. +..+|.+.++++...|+++ +++.++.++++.+|.|
T Consensus 126 ~~~EL~~~~~~l~~~pk--------------------------ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N 179 (306)
T 3dra_A 126 PYREFDILEAMLSSDPK--------------------------NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKN 179 (306)
T ss_dssp THHHHHHHHHHHHHCTT--------------------------CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHhCCC--------------------------CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCC
Confidence 99999999999998652 3334444444444444444 4444444444444444
Q ss_pred hh-hhhHHHHHHHcCC------HHHHHHHHHHHHhC
Q 024858 157 NK-ACNLGLCLIKRTR------YNEARSVLEDVLYG 185 (261)
Q Consensus 157 ~~-~~~L~~~l~~~g~------~~eA~~~~~~~l~~ 185 (261)
.. |.+.+.++...|+ +++++.++.+++..
T Consensus 180 ~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~ 215 (306)
T 3dra_A 180 NSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVK 215 (306)
T ss_dssp HHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHh
Confidence 44 4444444444444 44444444444443
No 148
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.53 E-value=2.6e-13 Score=103.61 Aligned_cols=140 Identities=16% Similarity=0.072 Sum_probs=113.5
Q ss_pred hHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCch----hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcC
Q 024858 26 VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ----SQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNG 101 (261)
Q Consensus 26 ~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~----~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~ 101 (261)
...++..+|.++...|++++|+..+++++...|.. ........+|.+|...|++++|+..+++++++.+..
T Consensus 8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~----- 82 (164)
T 3ro3_A 8 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQL----- 82 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-----
Confidence 35678899999999999999999999999876641 112355679999999999999999999999985311
Q ss_pred cchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc------hh-hhhHHHHHHHcCCHHH
Q 024858 102 KPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDA------NK-ACNLGLCLIKRTRYNE 174 (261)
Q Consensus 102 ~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~------~~-~~~L~~~l~~~g~~~e 174 (261)
+.. +....++.++|.++..+|++++|+..+++++.+.+.. .. +.++|.++..+|++++
T Consensus 83 ---------~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 147 (164)
T 3ro3_A 83 ---------KDR------AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQ 147 (164)
T ss_dssp ---------TCH------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred ---------CCc------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHH
Confidence 000 0124578999999999999999999999999874322 23 5689999999999999
Q ss_pred HHHHHHHHHhC
Q 024858 175 ARSVLEDVLYG 185 (261)
Q Consensus 175 A~~~~~~~l~~ 185 (261)
|+..+++++..
T Consensus 148 A~~~~~~a~~~ 158 (164)
T 3ro3_A 148 AMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999875
No 149
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.52 E-value=2.9e-13 Score=101.99 Aligned_cols=95 Identities=18% Similarity=0.081 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 024858 65 LDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEV 144 (261)
Q Consensus 65 ~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~ 144 (261)
....+|.++...|++++|+..|++++++. |+++.++.++|.+|..+|++++|+.
T Consensus 11 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~--------------------------~~~~~~~~~l~~~~~~~~~~~~A~~ 64 (137)
T 3q49_B 11 ELKEQGNRLFVGRKYPEAAACYGRAITRN--------------------------PLVAVYYTNRALCYLKMQQPEQALA 64 (137)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHhhC--------------------------cCcHHHHHHHHHHHHHhcCHHHHHH
Confidence 45568999999999999999999999974 4567899999999999999999999
Q ss_pred HHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 145 VYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 145 ~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
.|++++.++|+++. ++++|.++..+|++++|+..|++++..
T Consensus 65 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 65 DCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999 999999999999999999999999996
No 150
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.52 E-value=1.1e-13 Score=99.78 Aligned_cols=102 Identities=14% Similarity=0.028 Sum_probs=90.9
Q ss_pred CCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHc
Q 024858 57 CSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQK 136 (261)
Q Consensus 57 ~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~ 136 (261)
+|+++ .....+|.+|...|++++|+..|++++++. |+++.++.++|.+|..+
T Consensus 2 ~p~~~--~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--------------------------~~~~~~~~~~a~~~~~~ 53 (112)
T 2kck_A 2 VDQNP--EEYYLEGVLQYDAGNYTESIDLFEKAIQLD--------------------------PEESKYWLMKGKALYNL 53 (112)
T ss_dssp CCSST--TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC--------------------------CCCHHHHHHHHHHHHHT
T ss_pred CCCcH--HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC--------------------------cCCHHHHHHHHHHHHHc
Confidence 46533 234558899999999999999999999874 35677899999999999
Q ss_pred CCHHHHHHHHHHHHhhCCC--chh-hhhHHHHHHHc-CCHHHHHHHHHHHHhCC
Q 024858 137 TNFMAAEVVYQKAQMIDPD--ANK-ACNLGLCLIKR-TRYNEARSVLEDVLYGR 186 (261)
Q Consensus 137 g~~~eA~~~~~~al~~~P~--~~~-~~~L~~~l~~~-g~~~eA~~~~~~~l~~~ 186 (261)
|++++|+..|+++++++|+ +.. +.++|.++... |++++|+..+++++...
T Consensus 54 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 54 ERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp TCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred cCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 9999999999999999999 888 99999999999 99999999999999973
No 151
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.50 E-value=1.6e-12 Score=94.25 Aligned_cols=95 Identities=19% Similarity=0.163 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 024858 65 LDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEV 144 (261)
Q Consensus 65 ~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~ 144 (261)
....+|.++...|++++|+..|++++... |+++.++.++|.++..+|++++|+.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------------------------~~~~~~~~~~a~~~~~~~~~~~A~~ 59 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLD--------------------------PHNHVLYSNRSAAYAKKGDYQKAYE 59 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC--------------------------CCcHHHHHHHHHHHHhhccHHHHHH
Confidence 44568899999999999999999999874 3567899999999999999999999
Q ss_pred HHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 145 VYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 145 ~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
.|++++..+|++.. +.++|.++..+|++++|+..+++++..
T Consensus 60 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 60 DGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 99999999999998 999999999999999999999999997
No 152
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.50 E-value=5.5e-14 Score=104.30 Aligned_cols=91 Identities=10% Similarity=0.015 Sum_probs=51.1
Q ss_pred cCCcHHHHHHHHHHHhcC---CchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhh
Q 024858 40 LDRSEEAIEAIKSFRGLC---SKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQV 116 (261)
Q Consensus 40 ~g~~~eAi~~~~~~~~~~---P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~ 116 (261)
+|++++|+..|++++.++ |++ ......+|.+|...|++++|+..|++++++.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~--~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~----------------------- 57 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDL--AECYLGLGSTFRTLGEYRKAEAVLANGVKQF----------------------- 57 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------
T ss_pred CCcHHHHHHHHHHHHHcCCCCccH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------------------
Confidence 455666666666666652 442 2334446666666666666666666666542
Q ss_pred hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh
Q 024858 117 SVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK 158 (261)
Q Consensus 117 ~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~ 158 (261)
|+++.++.++|.+|..+|++++|+..|++++..+|+++.
T Consensus 58 ---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 96 (117)
T 3k9i_A 58 ---PNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDET 96 (117)
T ss_dssp ---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHH
T ss_pred ---CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Confidence 344556666666666666666666666666666666654
No 153
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.50 E-value=1.9e-12 Score=118.93 Aligned_cols=173 Identities=17% Similarity=0.111 Sum_probs=134.0
Q ss_pred hcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH----cCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHc----
Q 024858 5 VQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQ----LDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKC---- 76 (261)
Q Consensus 5 ~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~----~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~---- 76 (261)
..+++++|+.+|++++.. .++.++..||.++.. .+++++|+..|+++...++. .....|+.+|...
T Consensus 235 ~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~----~a~~~Lg~~y~~~~~g~ 308 (490)
T 2xm6_A 235 VTQDYTQSRVLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNS----DGQYYLAHLYDKGAEGV 308 (490)
T ss_dssp SCCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCH----HHHHHHHHHHHHCBTTB
T ss_pred CCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCH----HHHHHHHHHHHcCCCCC
Confidence 478999999999999875 557889999999999 99999999999999877543 2445689999988
Q ss_pred -CCHHHHHHHHHHHHHhhcchhhhc-CcchH------HHhhchhhhhhhcCCCcHHHHHHHHHHHHH----cCCHHHHHH
Q 024858 77 -GKVEEQIEMLKRKLRLIYQGEAFN-GKPTK------TARSHGKKFQVSVRQETSRLLGNLAWAYMQ----KTNFMAAEV 144 (261)
Q Consensus 77 -g~~~eA~~~~~~al~l~~~~~~~~-~~~~~------~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~----~g~~~eA~~ 144 (261)
+++++|+..|+++++..++...++ +.... ....-...+...++.+++.++++||.+|.. .+++++|+.
T Consensus 309 ~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 388 (490)
T 2xm6_A 309 AKNREQAISWYTKSAEQGDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAI 388 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 999999999999998754322221 11000 000000112234445788999999999999 899999999
Q ss_pred HHHHHHhhCCCchh-hhhHHHHHHH----cCCHHHHHHHHHHHHhC
Q 024858 145 VYQKAQMIDPDANK-ACNLGLCLIK----RTRYNEARSVLEDVLYG 185 (261)
Q Consensus 145 ~~~~al~~~P~~~~-~~~L~~~l~~----~g~~~eA~~~~~~~l~~ 185 (261)
+|+++++.. ++. +++||.+|.. .+++++|..+|++++..
T Consensus 389 ~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 432 (490)
T 2xm6_A 389 WMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTN 432 (490)
T ss_dssp HHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 999998863 566 8899999998 89999999999999986
No 154
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.49 E-value=5.9e-14 Score=128.69 Aligned_cols=164 Identities=16% Similarity=0.111 Sum_probs=124.4
Q ss_pred CHHHHHHHHHH----HHHcCCChHHHHHHHHHHH------------HHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHH
Q 024858 8 DPEAAIVLFWK----AINAGDRVDSALKDMAVVM------------KQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLID 71 (261)
Q Consensus 8 ~~~~A~~~~~~----al~~~p~~~~al~~Lg~~~------------~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ 71 (261)
.++.|+..+.+ +|.++|.. ++.+.|... ..++++++|+..++.++...|+. ....+.+|.
T Consensus 201 ~~e~al~~~~~ge~~~l~i~P~~--ay~~~g~~~~~ip~~~~l~y~~~l~~~~~A~~~~~~~~~~~~~~--a~~~~~~G~ 276 (457)
T 1kt0_A 201 GIDKALEKMQREEQCILYLGPRY--GFGEAGKPKFGIEPNAELIYEVTLKSFEKAKESWEMDTKEKLEQ--AAIVKEKGT 276 (457)
T ss_dssp HHHHHHTTCCBTCEEEEEECGGG--TTCSSCBGGGTBCTTCCEEEEEEEEEEECCCCGGGSCHHHHHHH--HHHHHHHHH
T ss_pred HHHHHHHhCCCCCEEEEEECccc--ccCCCCCcccCCCCCCEEEEEhhhhhcccCcchhhcCHHHHHHH--HHHHHHHHH
Confidence 45666666666 66677764 333333221 24567778888888888877773 345666899
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 024858 72 LYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQM 151 (261)
Q Consensus 72 ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~ 151 (261)
.|.+.|++++|+..|++++++.|....+.. . ....+.+....++.|+|.+|..+|++++|+..|++++.
T Consensus 277 ~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~---~--------~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 345 (457)
T 1kt0_A 277 VYFKGGKYMQAVIQYGKIVSWLEMEYGLSE---K--------ESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 345 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHTTCCSCCH---H--------HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHhcccccCCh---H--------HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 999999999999999999998653211000 0 00111222357899999999999999999999999999
Q ss_pred hCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhCC
Q 024858 152 IDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGR 186 (261)
Q Consensus 152 ~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~ 186 (261)
++|++.. ++++|.+|..+|++++|+..|++++..+
T Consensus 346 ~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~ 381 (457)
T 1kt0_A 346 LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 381 (457)
T ss_dssp HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 9999999 9999999999999999999999999983
No 155
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.49 E-value=6e-13 Score=98.27 Aligned_cols=109 Identities=17% Similarity=0.101 Sum_probs=98.5
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHH
Q 024858 3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ 82 (261)
Q Consensus 3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA 82 (261)
....|++++|+..|.+++..+|+++.++..+|.++...|++++|+..+++++...|+++ .....+|.+|...|++++|
T Consensus 22 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~A 99 (131)
T 2vyi_A 22 QMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYS--KAYGRMGLALSSLNKHVEA 99 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHH
T ss_pred HHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCH--HHHHHHHHHHHHhCCHHHH
Confidence 45689999999999999999999999999999999999999999999999999999853 3556699999999999999
Q ss_pred HHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCH
Q 024858 83 IEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNF 139 (261)
Q Consensus 83 ~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~ 139 (261)
+..|++++++. |+++.++.++|.++..+|++
T Consensus 100 ~~~~~~~~~~~--------------------------p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 100 VAYYKKALELD--------------------------PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHHHHS--------------------------TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhcC--------------------------ccchHHHHHHHHHHHHHhcC
Confidence 99999999874 35677899999999999875
No 156
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.48 E-value=3.7e-12 Score=116.97 Aligned_cols=172 Identities=13% Similarity=0.059 Sum_probs=133.5
Q ss_pred cCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH----cCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH----cC
Q 024858 6 QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQ----LDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKK----CG 77 (261)
Q Consensus 6 ~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~----~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~----~g 77 (261)
.+++++|+.+|++++.. +++.++..||.+|.. .+++++|+..|+++...+.. .....||.+|.. .+
T Consensus 56 ~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~----~a~~~Lg~~y~~g~g~~~ 129 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLP----QAQQNLGVMYHEGNGVKV 129 (490)
T ss_dssp CCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHTSSSCC
T ss_pred CcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCH----HHHHHHHHHHHcCCCCCC
Confidence 78999999999999986 678899999999999 99999999999999886533 244568999998 89
Q ss_pred CHHHHHHHHHHHHHhhcchhhhc-CcchHHH----hhch---hhhhhhcCCCcHHHHHHHHHHHHH----cCCHHHHHHH
Q 024858 78 KVEEQIEMLKRKLRLIYQGEAFN-GKPTKTA----RSHG---KKFQVSVRQETSRLLGNLAWAYMQ----KTNFMAAEVV 145 (261)
Q Consensus 78 ~~~eA~~~~~~al~l~~~~~~~~-~~~~~~~----~~~~---~~~~~~l~p~~~~~~~~Lg~~~~~----~g~~~eA~~~ 145 (261)
++++|+..|+++.+...+...++ +...... .... ..+.-.++.+++.++.+||.+|.. .+++++|+.+
T Consensus 130 ~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 209 (490)
T 2xm6_A 130 DKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQW 209 (490)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHH
Confidence 99999999999988643221111 1000000 0000 112234456788999999999998 8999999999
Q ss_pred HHHHHhhCCCchh-hhhHHHHHHH----cCCHHHHHHHHHHHHhC
Q 024858 146 YQKAQMIDPDANK-ACNLGLCLIK----RTRYNEARSVLEDVLYG 185 (261)
Q Consensus 146 ~~~al~~~P~~~~-~~~L~~~l~~----~g~~~eA~~~~~~~l~~ 185 (261)
|+++++. .++. .++||.+|.. .+++++|+.+|++++..
T Consensus 210 ~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~ 252 (490)
T 2xm6_A 210 YRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ 252 (490)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT
T ss_pred HHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 9999875 4566 8899999997 89999999999999886
No 157
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.48 E-value=4.4e-13 Score=99.73 Aligned_cols=108 Identities=11% Similarity=0.038 Sum_probs=96.8
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHH
Q 024858 3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ 82 (261)
Q Consensus 3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA 82 (261)
....|++++|+..|.+++..+|++..++..+|.++...|++++|+..+++++..+|+++ .....+|.+|...|++++|
T Consensus 26 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~la~~~~~~~~~~~A 103 (133)
T 2lni_A 26 CFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFI--KGYTRKAAALEAMKDYTKA 103 (133)
T ss_dssp HHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCch--HHHHHHHHHHHHHhhHHHH
Confidence 45789999999999999999999999999999999999999999999999999999853 3556699999999999999
Q ss_pred HHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCC
Q 024858 83 IEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTN 138 (261)
Q Consensus 83 ~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~ 138 (261)
+..|++++++.| ++..++.++|.++..+|+
T Consensus 104 ~~~~~~~~~~~p--------------------------~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 104 MDVYQKALDLDS--------------------------SCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHHHHHCG--------------------------GGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCC--------------------------CchHHHHHHHHHHHHhcC
Confidence 999999998743 345688999999988775
No 158
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.48 E-value=7.4e-14 Score=103.57 Aligned_cols=88 Identities=13% Similarity=0.154 Sum_probs=75.8
Q ss_pred HcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 024858 75 KCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDP 154 (261)
Q Consensus 75 ~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P 154 (261)
.+|++++|+..|++++++.+. +|+++.++.+||.+|..+|++++|+..|+++++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~-----------------------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 58 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQ-----------------------GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP 58 (117)
T ss_dssp -----CCCHHHHHHHHSSCCC-----------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CCCcHHHHHHHHHHHHHcCCC-----------------------CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 469999999999999997210 124567999999999999999999999999999999
Q ss_pred Cchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 155 DANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 155 ~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
+++. ++++|.++..+|++++|+..+++++..
T Consensus 59 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 90 (117)
T 3k9i_A 59 NHQALRVFYAMVLYNLGRYEQGVELLLKIIAE 90 (117)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999 999999999999999999999999997
No 159
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.48 E-value=1.1e-12 Score=123.42 Aligned_cols=149 Identities=9% Similarity=-0.018 Sum_probs=134.5
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCC----------cHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcC-
Q 024858 9 PEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDR----------SEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCG- 77 (261)
Q Consensus 9 ~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~----------~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g- 77 (261)
.++|+.++.++|..+|++..+|+.-+.++...|+ ++++++.+++++..+|++.. +++.-+.++.+.|
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~--aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYG--TWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHccc
Confidence 4568999999999999999999999999999999 99999999999999999532 3444677888999
Q ss_pred -CHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCC
Q 024858 78 -KVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKT-NFMAAEVVYQKAQMIDPD 155 (261)
Q Consensus 78 -~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g-~~~eA~~~~~~al~~~P~ 155 (261)
+++++++.+.++++++| .+..+|.+.|+++...| .++++++++.++++.+|+
T Consensus 123 ~~~~~el~~~~k~l~~d~--------------------------~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~ 176 (567)
T 1dce_A 123 PNWARELELCARFLEADE--------------------------RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS 176 (567)
T ss_dssp CCHHHHHHHHHHHHHHCT--------------------------TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC
T ss_pred ccHHHHHHHHHHHHhhcc--------------------------ccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC
Confidence 77999999999999743 46679999999999999 999999999999999999
Q ss_pred chh-hhhHHHHHHHc--------------CCHHHHHHHHHHHHhC
Q 024858 156 ANK-ACNLGLCLIKR--------------TRYNEARSVLEDVLYG 185 (261)
Q Consensus 156 ~~~-~~~L~~~l~~~--------------g~~~eA~~~~~~~l~~ 185 (261)
+.. |.+.+.++... +++++|++++.+++..
T Consensus 177 n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~ 221 (567)
T 1dce_A 177 NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT 221 (567)
T ss_dssp CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhh
Confidence 999 99999999885 6789999999999997
No 160
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.47 E-value=2.7e-12 Score=110.10 Aligned_cols=142 Identities=14% Similarity=0.051 Sum_probs=114.2
Q ss_pred CChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchh----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhh
Q 024858 24 DRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQS----QESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAF 99 (261)
Q Consensus 24 p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~----~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~ 99 (261)
|.....+...+..+...|++++|++.+++++...|... ...+...+|.+|...|++++|+..|++++++.+...
T Consensus 72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~-- 149 (293)
T 2qfc_A 72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGI-- 149 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSS--
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCC--
Confidence 44455667788999999999999999999998877521 123345688899999999999999999998743110
Q ss_pred cCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH---hhCCCch----h-hhhHHHHHHHcCC
Q 024858 100 NGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQ---MIDPDAN----K-ACNLGLCLIKRTR 171 (261)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al---~~~P~~~----~-~~~L~~~l~~~g~ 171 (261)
.. .....+++++|.+|..+|++++|+.+|++++ ...|++. . ++++|.+|..+|+
T Consensus 150 ------------~~------~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~ 211 (293)
T 2qfc_A 150 ------------DV------YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSR 211 (293)
T ss_dssp ------------CT------THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ------------ch------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhh
Confidence 00 0124589999999999999999999999999 5566643 4 7899999999999
Q ss_pred HHHHHHHHHHHHhC
Q 024858 172 YNEARSVLEDVLYG 185 (261)
Q Consensus 172 ~~eA~~~~~~~l~~ 185 (261)
+++|+.++++++..
T Consensus 212 y~~Al~~~~kal~~ 225 (293)
T 2qfc_A 212 YEESLYQVNKAIEI 225 (293)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999985
No 161
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.46 E-value=2.1e-12 Score=96.14 Aligned_cols=96 Identities=23% Similarity=0.190 Sum_probs=85.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 024858 67 NVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVY 146 (261)
Q Consensus 67 ~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~ 146 (261)
..+|..+...|++++|+..|+++++..|.. +..+.++.++|.+|..+|++++|+..|
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~-----------------------~~~~~~~~~lg~~~~~~~~~~~A~~~~ 62 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPNG-----------------------VYTPNALYWLGESYYATRNFQLAEAQF 62 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSS-----------------------TTHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCCC-----------------------cccHHHHHHHHHHHHHhccHHHHHHHH
Confidence 347888999999999999999999875410 112368999999999999999999999
Q ss_pred HHHHhhCCCc---hh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 147 QKAQMIDPDA---NK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 147 ~~al~~~P~~---~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
++++..+|++ +. ++++|.++..+|++++|+..|++++..
T Consensus 63 ~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 63 RDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999 77 889999999999999999999999997
No 162
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=3e-12 Score=97.03 Aligned_cols=99 Identities=20% Similarity=0.074 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 024858 64 SLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAE 143 (261)
Q Consensus 64 ~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~ 143 (261)
.....+|..+...|++++|+..|++++++.|.. +....++.++|.+|..+|++++|+
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~-----------------------~~~~~~~~~~a~~~~~~~~~~~A~ 85 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALGLDATP-----------------------QDQAVLHRNRAACHLKLEDYDKAE 85 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCH-----------------------HHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccc-----------------------hHHHHHHHHHHHHHHHHccHHHHH
Confidence 345668999999999999999999999875410 001578999999999999999999
Q ss_pred HHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 144 VVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 144 ~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
..|++++.++|++.. ++++|.++..+|++++|+.+|++++..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 86 TEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 999999999999998 999999999999999999999999997
No 163
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.45 E-value=1.4e-12 Score=119.22 Aligned_cols=141 Identities=16% Similarity=0.140 Sum_probs=71.0
Q ss_pred CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHc----CCcHHHHHHHHHHHhcCCchhHHHHHHHHHHH-H--HHcCCHH
Q 024858 8 DPEAAIVLFWKAINAGDRVDSALKDMAVVMKQL----DRSEEAIEAIKSFRGLCSKQSQESLDNVLIDL-Y--KKCGKVE 80 (261)
Q Consensus 8 ~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~----g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~l-y--~~~g~~~ 80 (261)
++++|+.+|++++..+|..+.++++||.+|... +++++|+..|+++. |+++ ...+.||.+ | ...|+++
T Consensus 194 ~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~--~a~~~Lg~~~~~~~~~~d~~ 268 (452)
T 3e4b_A 194 QQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYP--ASWVSLAQLLYDFPELGDVE 268 (452)
T ss_dssp HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGST--HHHHHHHHHHHHSGGGCCHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCH--HHHHHHHHHHHhCCCCCCHH
Confidence 444455555555544444444444445444333 34445555554444 3321 122234444 2 3344555
Q ss_pred HHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHhhCCC
Q 024858 81 EQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKT-----NFMAAEVVYQKAQMIDPD 155 (261)
Q Consensus 81 eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g-----~~~eA~~~~~~al~~~P~ 155 (261)
+|+..|+++.+ ++++.++++||.+|. .| ++++|+.+|++|. |.
T Consensus 269 ~A~~~~~~Aa~----------------------------~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g 316 (452)
T 3e4b_A 269 QMMKYLDNGRA----------------------------ADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GR 316 (452)
T ss_dssp HHHHHHHHHHH----------------------------TTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TT
T ss_pred HHHHHHHHHHH----------------------------CCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CC
Confidence 55555555444 345556666666665 33 6666666666665 55
Q ss_pred chh-hhhHHHHHHH----cCCHHHHHHHHHHHHhC
Q 024858 156 ANK-ACNLGLCLIK----RTRYNEARSVLEDVLYG 185 (261)
Q Consensus 156 ~~~-~~~L~~~l~~----~g~~~eA~~~~~~~l~~ 185 (261)
++. .++||.+|.. ..++++|+.+|+++...
T Consensus 317 ~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 351 (452)
T 3e4b_A 317 EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN 351 (452)
T ss_dssp CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh
Confidence 555 5566655554 22666666666665553
No 164
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.45 E-value=1.2e-12 Score=104.68 Aligned_cols=136 Identities=13% Similarity=0.086 Sum_probs=109.2
Q ss_pred chhhcCCHHHHHHHHHHHHH------cCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc---CCch--hHHHHHHHHH
Q 024858 2 VQLVQKDPEAAIVLFWKAIN------AGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGL---CSKQ--SQESLDNVLI 70 (261)
Q Consensus 2 ~~~~~~~~~~A~~~~~~al~------~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~---~P~~--~~~~~~~~L~ 70 (261)
+....|++++|+..|++++. ..|....++.++|.++..+|++++|+..+++++.+ .|++ ......+.+|
T Consensus 35 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 114 (203)
T 3gw4_A 35 VYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVA 114 (203)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHH
Confidence 35678999999999999998 55667888999999999999999999999999887 3421 1234566799
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 024858 71 DLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQ 150 (261)
Q Consensus 71 ~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al 150 (261)
.+|...|++++|+..+++++++... .+... ....++.++|.++..+|++++|+.++++++
T Consensus 115 ~~~~~~g~~~~A~~~~~~al~~~~~--------------~~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 115 TVALHFGDLAGARQEYEKSLVYAQQ--------------ADDQV------AIACAFRGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHH--------------TTCHH------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHh--------------ccchH------HHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 9999999999999999999987421 00000 023467999999999999999999999999
Q ss_pred hhCCCch
Q 024858 151 MIDPDAN 157 (261)
Q Consensus 151 ~~~P~~~ 157 (261)
.+.....
T Consensus 175 ~~~~~~~ 181 (203)
T 3gw4_A 175 DIFAELE 181 (203)
T ss_dssp HHHHHTT
T ss_pred HHHHHcC
Confidence 8855443
No 165
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.44 E-value=1.8e-13 Score=120.64 Aligned_cols=128 Identities=12% Similarity=0.051 Sum_probs=79.6
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCChH-----------------HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHH
Q 024858 3 QLVQKDPEAAIVLFWKAINAGDRVD-----------------SALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESL 65 (261)
Q Consensus 3 ~~~~~~~~~A~~~~~~al~~~p~~~-----------------~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~ 65 (261)
.+..|++++|+..|++++...|++. .++.++|.++..+|++++|+..+++++.++|++. .+
T Consensus 189 ~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~--~a 266 (338)
T 2if4_A 189 LFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNP--KA 266 (338)
T ss_dssp TCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCH--HH
T ss_pred HHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HH
Confidence 4568999999999999999999887 4899999999999999999999999999999853 45
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHH-HHcCCHHHHHH
Q 024858 66 DNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAY-MQKTNFMAAEV 144 (261)
Q Consensus 66 ~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~-~~~g~~~eA~~ 144 (261)
++.+|.+|...|++++|+..|++++++. |+++.++.+|+.+. ...+..+++..
T Consensus 267 ~~~lg~a~~~~g~~~~A~~~l~~al~l~--------------------------p~~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 267 LFRRGKAKAELGQMDSARDDFRKAQKYA--------------------------PDDKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------------------------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC--------------------------CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6669999999999999999999998874 35667888999884 56788899999
Q ss_pred HHHHHHhhCCCchh
Q 024858 145 VYQKAQMIDPDANK 158 (261)
Q Consensus 145 ~~~~al~~~P~~~~ 158 (261)
.|++++..+|+++.
T Consensus 321 ~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 321 MYKGIFKGKDEGGA 334 (338)
T ss_dssp --------------
T ss_pred HHHHhhCCCCCCCC
Confidence 99999999998764
No 166
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.43 E-value=2.6e-12 Score=94.94 Aligned_cols=95 Identities=16% Similarity=0.194 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 024858 65 LDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEV 144 (261)
Q Consensus 65 ~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~ 144 (261)
....+|.++...|++++|+..|+++++.. |+++.++.++|.+|..+|++++|+.
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------------------------~~~~~~~~~la~~~~~~~~~~~A~~ 59 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD--------------------------PTNMTYITNQAAVYFEKGDYNKCRE 59 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC--------------------------CccHHHHHHHHHHHHHhccHHHHHH
Confidence 45568999999999999999999999874 3467789999999999999999999
Q ss_pred HHHHHHhhCCCc-------hh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 145 VYQKAQMIDPDA-------NK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 145 ~~~~al~~~P~~-------~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
.|++++.+.|++ .. +.++|.++...|++++|+..|++++..
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 60 LCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 999999999877 66 889999999999999999999999997
No 167
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.43 E-value=6.4e-12 Score=110.59 Aligned_cols=165 Identities=17% Similarity=0.037 Sum_probs=119.9
Q ss_pred chhhcCCHHHHHHHHHHHHHcC--------CChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCch--h-HHHHHHHHH
Q 024858 2 VQLVQKDPEAAIVLFWKAINAG--------DRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ--S-QESLDNVLI 70 (261)
Q Consensus 2 ~~~~~~~~~~A~~~~~~al~~~--------p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~--~-~~~~~~~L~ 70 (261)
+.+..|++++|+..|++++... |....++.++|.++..+|++++|+..+++++...|.. . .......++
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 181 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 181 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence 3567899999999999999743 4566778899999999999999999999999887741 1 123456689
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 024858 71 DLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQ 150 (261)
Q Consensus 71 ~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al 150 (261)
.++...|++++|+..+++++.+.+.... . ... .......++.++..+|++++|...+++++
T Consensus 182 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~----~--------~~~-------~~~~~~~~~~~~~~~g~~~~A~~~~~~a~ 242 (373)
T 1hz4_A 182 QCSLARGDLDNARSQLNRLENLLGNGKY----H--------SDW-------ISNANKVRVIYWQMTGDKAAAANWLRHTA 242 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCC----C--------HHH-------HHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhccCc----c--------hhH-------HHHHHHHHHHHHHHCCCHHHHHHHHHhCC
Confidence 9999999999999999999987421000 0 000 00111234555777888888888888887
Q ss_pred hhCCCch----h-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 151 MIDPDAN----K-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 151 ~~~P~~~----~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
...|.+. . +.++|.++..+|++++|...+++++..
T Consensus 243 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~ 282 (373)
T 1hz4_A 243 KPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNEN 282 (373)
T ss_dssp CCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7666431 1 356777888888888888888777664
No 168
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.43 E-value=4.3e-12 Score=92.77 Aligned_cols=107 Identities=22% Similarity=0.177 Sum_probs=95.5
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHH
Q 024858 3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ 82 (261)
Q Consensus 3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA 82 (261)
....|++++|+.+|.+++..+|....++..+|.++...|++++|+..+++++...|++. .....++.+|...|++++|
T Consensus 19 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~la~~~~~~~~~~~A 96 (125)
T 1na0_A 19 YYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA--EAWYNLGNAYYKQGDYDEA 96 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccH--HHHHHHHHHHHHhcCHHHH
Confidence 45689999999999999999999999999999999999999999999999999999853 3456689999999999999
Q ss_pred HHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcC
Q 024858 83 IEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKT 137 (261)
Q Consensus 83 ~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g 137 (261)
+..+++++++. |+++.++.++|.++..+|
T Consensus 97 ~~~~~~~~~~~--------------------------~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 97 IEYYQKALELD--------------------------PNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhC--------------------------CCcHHHHHHHHHHHHhcc
Confidence 99999999874 456778999999988765
No 169
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.42 E-value=6.7e-12 Score=110.94 Aligned_cols=151 Identities=11% Similarity=0.037 Sum_probs=133.4
Q ss_pred CCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcC-CcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHc-C-CHHHHH
Q 024858 7 KDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLD-RSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKC-G-KVEEQI 83 (261)
Q Consensus 7 ~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g-~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~-g-~~~eA~ 83 (261)
+..++|+.++.++|..+|++..+|+.-+.++...| .++++++.++.++..+|++. .+++.-+.++... + ++++++
T Consensus 68 e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny--~aW~hR~wlL~~l~~~~~~~EL 145 (349)
T 3q7a_A 68 EKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSY--QVWHHRLLLLDRISPQDPVSEI 145 (349)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCH--HHHHHHHHHHHHHCCSCCHHHH
T ss_pred CCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcH--HHHHHHHHHHHHhcCCChHHHH
Confidence 44567999999999999999999999999999999 59999999999999999842 3444456666776 7 899999
Q ss_pred HHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHhhCCC
Q 024858 84 EMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFM--------AAEVVYQKAQMIDPD 155 (261)
Q Consensus 84 ~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~--------eA~~~~~~al~~~P~ 155 (261)
+.+.++++++ |.+..+|.+.++++...|+++ +++.++.++++.+|.
T Consensus 146 ~~~~k~L~~d--------------------------pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~ 199 (349)
T 3q7a_A 146 EYIHGSLLPD--------------------------PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR 199 (349)
T ss_dssp HHHHHHTSSC--------------------------TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHhC--------------------------CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC
Confidence 9999998864 456779999999999999888 999999999999999
Q ss_pred chh-hhhHHHHHHHcCC-------HHHHHHHHHHHHhC
Q 024858 156 ANK-ACNLGLCLIKRTR-------YNEARSVLEDVLYG 185 (261)
Q Consensus 156 ~~~-~~~L~~~l~~~g~-------~~eA~~~~~~~l~~ 185 (261)
|.. |.+.+.++...|+ ++++++++++++..
T Consensus 200 N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~ 237 (349)
T 3q7a_A 200 NNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHL 237 (349)
T ss_dssp CHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHh
Confidence 999 9999999999997 79999999999997
No 170
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.41 E-value=2.7e-11 Score=106.50 Aligned_cols=152 Identities=8% Similarity=-0.010 Sum_probs=133.1
Q ss_pred cCCHH-HHHHHHHHHHHcCCChHHHHHHHHHHHHHcCC----------cHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Q 024858 6 QKDPE-AAIVLFWKAINAGDRVDSALKDMAVVMKQLDR----------SEEAIEAIKSFRGLCSKQSQESLDNVLIDLYK 74 (261)
Q Consensus 6 ~~~~~-~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~----------~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~ 74 (261)
.|+++ +|+.++.++|..+|++..+|+.-+.++...|+ +++++..++.++..+|.+. .+++.-+.++.
T Consensus 42 ~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny--~aW~hR~wlL~ 119 (331)
T 3dss_A 42 AGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSY--GTWHHRCWLLS 119 (331)
T ss_dssp TTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHh
Confidence 44544 69999999999999999999999999988776 6899999999999999853 23444667778
Q ss_pred HcCC--HHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHh
Q 024858 75 KCGK--VEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTN-FMAAEVVYQKAQM 151 (261)
Q Consensus 75 ~~g~--~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~-~~eA~~~~~~al~ 151 (261)
..|+ ++++++++.++++++ |.+..+|.+.++++...|. +++++.++.+++.
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~d--------------------------prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~ 173 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEAD--------------------------ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT 173 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred ccCcccHHHHHHHHHHHHHhC--------------------------CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHH
Confidence 8884 999999999999974 3566799999999999999 6999999999999
Q ss_pred hCCCchh-hhhHHHHHHHc--------------CCHHHHHHHHHHHHhC
Q 024858 152 IDPDANK-ACNLGLCLIKR--------------TRYNEARSVLEDVLYG 185 (261)
Q Consensus 152 ~~P~~~~-~~~L~~~l~~~--------------g~~~eA~~~~~~~l~~ 185 (261)
.+|.|.. |.+.+.++... +.+++++.++.+++..
T Consensus 174 ~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~ 222 (331)
T 3dss_A 174 RNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT 222 (331)
T ss_dssp HCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH
T ss_pred HCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh
Confidence 9999999 99999999887 5699999999999997
No 171
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.41 E-value=1.8e-12 Score=111.29 Aligned_cols=134 Identities=19% Similarity=0.032 Sum_probs=111.9
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHH
Q 024858 3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ 82 (261)
Q Consensus 3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA 82 (261)
....|++++|...|..++..+|+.. +.+.+|.++.+.||+++|+..++.+....+..........||.++...|++++|
T Consensus 112 L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eA 190 (282)
T 4f3v_A 112 EAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEA 190 (282)
T ss_dssp HHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHH
Confidence 4568999999999999999999999 999999999999999999999997776532211123667799999999999999
Q ss_pred HHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hh
Q 024858 83 IEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQE-TSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-AC 160 (261)
Q Consensus 83 ~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~-~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~ 160 (261)
+..|++++... .+|. .+++++++|.++.++|+.+||...|++++..+|+ .. +.
T Consensus 191 l~~l~~a~~g~------------------------~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~ 245 (282)
T 4f3v_A 191 ERRLTEANDSP------------------------AGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAA 245 (282)
T ss_dssp HHHHHHHHTST------------------------TTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHH
T ss_pred HHHHHHHhcCC------------------------CCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHH
Confidence 99999998531 0122 4578999999999999999999999999999999 65 44
Q ss_pred hH
Q 024858 161 NL 162 (261)
Q Consensus 161 ~L 162 (261)
.|
T Consensus 246 aL 247 (282)
T 4f3v_A 246 AL 247 (282)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 172
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.41 E-value=2e-11 Score=106.13 Aligned_cols=169 Identities=11% Similarity=-0.012 Sum_probs=97.5
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 024858 12 AIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLR 91 (261)
Q Consensus 12 A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~ 91 (261)
|+..+++.+..++....++..+|.++...|++++|+..+.+.+..+|..-...+...++.+|.+.||.+.|.+.++++.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 44555555544333344445556666666666666666666555554111233444455566666666666666665555
Q ss_pred hhcc-----hhhhcC-cch--HHHhh---chh---hhh--hhcCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-
Q 024858 92 LIYQ-----GEAFNG-KPT--KTARS---HGK---KFQ--VSVRQE--TSRLLGNLAWAYMQKTNFMAAEVVYQKAQMI- 152 (261)
Q Consensus 92 l~~~-----~~~~~~-~~~--~~~~~---~~~---~~~--~~l~p~--~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~- 152 (261)
..|. +..... ... ..... ... .|. ..--|+ .+..+.| +++++|++++|...++++++.
T Consensus 165 ~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHH
T ss_pred cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhc
Confidence 4331 111100 000 00000 000 011 111233 2345555 899999999999999988887
Q ss_pred ---------CCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 153 ---------DPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 153 ---------~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
+|+++. ..|+..+...+|+ +|.++++++...
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 588998 7799999999998 999999999998
No 173
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.41 E-value=1.6e-11 Score=106.99 Aligned_cols=151 Identities=4% Similarity=-0.089 Sum_probs=122.8
Q ss_pred CCHHHHHHHHHHHHHcCCChHHHHHHHHHHH----HHc---CCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCH
Q 024858 7 KDPEAAIVLFWKAINAGDRVDSALKDMAVVM----KQL---DRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKV 79 (261)
Q Consensus 7 ~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~----~~~---g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~ 79 (261)
+++++++.++.+++..+|++..+|+.-+.++ ... ++++++++.+++++..+|.+.+ +++.-+.++...|++
T Consensus 83 ~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~--aW~~R~~vl~~l~~~ 160 (306)
T 3dra_A 83 RNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHH--VWSYRKWLVDTFDLH 160 (306)
T ss_dssp SCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHTTCT
T ss_pred ccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHhccc
Confidence 4899999999999999999999999999999 777 8999999999999999998533 334456677889999
Q ss_pred H--HHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCC------HHHHHHHHHHHHh
Q 024858 80 E--EQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTN------FMAAEVVYQKAQM 151 (261)
Q Consensus 80 ~--eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~------~~eA~~~~~~al~ 151 (261)
+ ++++.+.++++.++ .+-.+|.+.+.++...|+ +++++.++.+++.
T Consensus 161 ~~~~EL~~~~~~i~~d~--------------------------~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~ 214 (306)
T 3dra_A 161 NDAKELSFVDKVIDTDL--------------------------KNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIV 214 (306)
T ss_dssp TCHHHHHHHHHHHHHCT--------------------------TCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhCC--------------------------CCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHH
Confidence 8 99999999998754 455678888888877776 7888888888888
Q ss_pred hCCCchh-hhhHHHHHHHcCCHHH-HHHHHHHHHhC
Q 024858 152 IDPDANK-ACNLGLCLIKRTRYNE-ARSVLEDVLYG 185 (261)
Q Consensus 152 ~~P~~~~-~~~L~~~l~~~g~~~e-A~~~~~~~l~~ 185 (261)
.+|+|.+ |+.++.++.+.|+..+ ...++.+++..
T Consensus 215 ~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~ 250 (306)
T 3dra_A 215 KCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDL 250 (306)
T ss_dssp HCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEG
T ss_pred hCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhc
Confidence 8888887 8888888888887555 34466666554
No 174
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.41 E-value=5.1e-13 Score=104.94 Aligned_cols=85 Identities=12% Similarity=0.152 Sum_probs=78.4
Q ss_pred HcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCH----------HHHHH
Q 024858 75 KCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNF----------MAAEV 144 (261)
Q Consensus 75 ~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~----------~eA~~ 144 (261)
+.+++++|++.++++++++ |+++++|.++|.++..++++ ++|+.
T Consensus 14 r~~~feeA~~~~~~Ai~l~--------------------------P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~ 67 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN--------------------------PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAIT 67 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC--------------------------CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHH
Confidence 5578999999999999874 57889999999999999875 59999
Q ss_pred HHHHHHhhCCCchh-hhhHHHHHHHcC-----------CHHHHHHHHHHHHhC
Q 024858 145 VYQKAQMIDPDANK-ACNLGLCLIKRT-----------RYNEARSVLEDVLYG 185 (261)
Q Consensus 145 ~~~~al~~~P~~~~-~~~L~~~l~~~g-----------~~~eA~~~~~~~l~~ 185 (261)
.|++|++++|++.. +++||++|..+| ++++|+.+|++++..
T Consensus 68 ~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 68 KFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 99999999999999 999999999985 899999999999998
No 175
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.40 E-value=4.6e-12 Score=96.61 Aligned_cols=133 Identities=16% Similarity=0.063 Sum_probs=106.5
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCCh------HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCch----hHHHHHHHHHHH
Q 024858 3 QLVQKDPEAAIVLFWKAINAGDRV------DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ----SQESLDNVLIDL 72 (261)
Q Consensus 3 ~~~~~~~~~A~~~~~~al~~~p~~------~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~----~~~~~~~~L~~l 72 (261)
....|++++|+.+|++++...+.. ..++..+|.++..+|++++|+..+++++.+.+.. ........+|.+
T Consensus 19 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~ 98 (164)
T 3ro3_A 19 HYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNT 98 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 456899999999999999865443 2578899999999999999999999998875531 123345678999
Q ss_pred HHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 024858 73 YKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMI 152 (261)
Q Consensus 73 y~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~ 152 (261)
|...|++++|+..+++++++.+.. +.. +....++.++|.+|..+|++++|+..+++++++
T Consensus 99 ~~~~~~~~~A~~~~~~a~~~~~~~--------------~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 99 YTLLQDYEKAIDYHLKHLAIAQEL--------------KDR------IGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHT--------------TCH------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHc--------------cch------HhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 999999999999999999874210 000 112458899999999999999999999999987
Q ss_pred CCC
Q 024858 153 DPD 155 (261)
Q Consensus 153 ~P~ 155 (261)
...
T Consensus 159 ~~~ 161 (164)
T 3ro3_A 159 SRE 161 (164)
T ss_dssp HTT
T ss_pred HHH
Confidence 554
No 176
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.40 E-value=4.9e-12 Score=113.20 Aligned_cols=162 Identities=9% Similarity=0.075 Sum_probs=131.4
Q ss_pred hhcCCHHHHHHHHHHHHHcCCCh-----------------HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCc--h--hH
Q 024858 4 LVQKDPEAAIVLFWKAINAGDRV-----------------DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK--Q--SQ 62 (261)
Q Consensus 4 ~~~~~~~~A~~~~~~al~~~p~~-----------------~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~--~--~~ 62 (261)
+.+|++++|+..|.++++..|+. ..++..||.+|..+|++++|++.+.+++...+. + ..
T Consensus 15 ~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 94 (434)
T 4b4t_Q 15 VNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTV 94 (434)
T ss_dssp HHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHH
T ss_pred HHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHH
Confidence 45799999999999999987763 357899999999999999999999998876553 1 12
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHH
Q 024858 63 ESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAA 142 (261)
Q Consensus 63 ~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA 142 (261)
..+.++++.++...|++++|+..+++++...... +. .+....++.+||.+|..+|+|++|
T Consensus 95 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--------------~~------~~~~~~~~~~la~~~~~~g~~~~A 154 (434)
T 4b4t_Q 95 KVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKRE--------------KR------VFLKHSLSIKLATLHYQKKQYKDS 154 (434)
T ss_dssp HHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHS--------------SC------CSSHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh--------------Cc------cHHHHHHHHHHHHHHHHccChHHH
Confidence 2345678888899999999999999999874210 00 112356889999999999999999
Q ss_pred HHHHHHHHhhC------CCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 143 EVVYQKAQMID------PDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 143 ~~~~~~al~~~------P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
+..+++++..- |.... +.++|.+|..+|++++|..+|++++..
T Consensus 155 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 204 (434)
T 4b4t_Q 155 LALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTA 204 (434)
T ss_dssp HHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 99999998752 22234 678999999999999999999999875
No 177
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.39 E-value=5.5e-12 Score=108.14 Aligned_cols=136 Identities=15% Similarity=0.083 Sum_probs=107.4
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchH
Q 024858 30 LKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQ----ESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTK 105 (261)
Q Consensus 30 l~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~----~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~ 105 (261)
+...+..+...|++++|+..+++++...|..+. ..+...++.+|...|++++|+..|++++++.+...
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~-------- 149 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGI-------- 149 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCS--------
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccc--------
Confidence 444577889999999999999999997775322 22344588999999999999999999999643110
Q ss_pred HHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CC----chh-hhhHHHHHHHcCCHHHHHH
Q 024858 106 TARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMID---PD----ANK-ACNLGLCLIKRTRYNEARS 177 (261)
Q Consensus 106 ~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~---P~----~~~-~~~L~~~l~~~g~~~eA~~ 177 (261)
... ....++.++|.+|..+|++++|+.+|+++++.. |. ... ++++|.+|.++|++++|+.
T Consensus 150 ------~~~------~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~ 217 (293)
T 3u3w_A 150 ------DVY------QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLY 217 (293)
T ss_dssp ------CTT------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ------cHH------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 000 013478999999999999999999999999531 12 223 6799999999999999999
Q ss_pred HHHHHHhC
Q 024858 178 VLEDVLYG 185 (261)
Q Consensus 178 ~~~~~l~~ 185 (261)
++++++..
T Consensus 218 ~~~~al~~ 225 (293)
T 3u3w_A 218 QVNKAIEI 225 (293)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999985
No 178
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.37 E-value=4.8e-12 Score=117.06 Aligned_cols=135 Identities=7% Similarity=-0.039 Sum_probs=107.4
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHhc-----CCchh-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHH
Q 024858 33 MAVVMKQLDRSEEAIEAIKSFRGL-----CSKQS-QESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKT 106 (261)
Q Consensus 33 Lg~~~~~~g~~~eAi~~~~~~~~~-----~P~~~-~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~ 106 (261)
.+..+..+|++++|+..+++++.. +|+++ .....++||.+|..+|+|++|+.+++++|++.. ...
T Consensus 315 ~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~---------~~l 385 (490)
T 3n71_A 315 KIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYM---------KLY 385 (490)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---------HHS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH---------HHc
Confidence 345577899999999999998753 45532 234457799999999999999999999999842 011
Q ss_pred HhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCchh----hhhHHHHHHHcCCHHHHHH
Q 024858 107 ARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMI-----DPDANK----ACNLGLCLIKRTRYNEARS 177 (261)
Q Consensus 107 ~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~-----~P~~~~----~~~L~~~l~~~g~~~eA~~ 177 (261)
+..| |+....++|||.+|..+|++++|+.+|++|+++ .|+++. ..+|+.++.++|++++|..
T Consensus 386 G~~H---------p~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~ 456 (490)
T 3n71_A 386 HHNN---------AQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEF 456 (490)
T ss_dssp CTTC---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCC---------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122 223458899999999999999999999999985 578774 4588999999999999999
Q ss_pred HHHHHHhC
Q 024858 178 VLEDVLYG 185 (261)
Q Consensus 178 ~~~~~l~~ 185 (261)
.|+++.+.
T Consensus 457 ~~~~~~~~ 464 (490)
T 3n71_A 457 MYHKMREA 464 (490)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998774
No 179
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.36 E-value=5.5e-11 Score=104.49 Aligned_cols=149 Identities=8% Similarity=-0.034 Sum_probs=128.1
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCC--cHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCC-HHHHHHH
Q 024858 9 PEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDR--SEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGK-VEEQIEM 85 (261)
Q Consensus 9 ~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~--~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~-~~eA~~~ 85 (261)
+++++.++..++..+|++..+|+.-+.++...|+ ++++++.+.+++..+|.+. .+++.-+.++...|+ ++++++.
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy--~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNF--HCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHhCcCHHHHHHH
Confidence 6789999999999999999999999999999995 8999999999999999853 233445666788898 6999999
Q ss_pred HHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHh
Q 024858 86 LKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQK--------------TNFMAAEVVYQKAQM 151 (261)
Q Consensus 86 ~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~--------------g~~~eA~~~~~~al~ 151 (261)
+.++++.+ |.+..+|++++.++... +.+++++.++.+++.
T Consensus 168 ~~~~I~~~--------------------------p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~ 221 (331)
T 3dss_A 168 TDSLITRN--------------------------FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF 221 (331)
T ss_dssp HHHHHHHC--------------------------SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHC--------------------------CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHH
Confidence 99999874 45778999999999877 568999999999999
Q ss_pred hCCCchh-hhhHHHHHHHc-----------CCHHHHHHHHHHHHhC
Q 024858 152 IDPDANK-ACNLGLCLIKR-----------TRYNEARSVLEDVLYG 185 (261)
Q Consensus 152 ~~P~~~~-~~~L~~~l~~~-----------g~~~eA~~~~~~~l~~ 185 (261)
++|+|.+ |+.+..++... +.++++++.+++++..
T Consensus 222 ~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~ 267 (331)
T 3dss_A 222 TDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL 267 (331)
T ss_dssp HSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh
Confidence 9999999 87665555555 4689999999999997
No 180
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.33 E-value=4.4e-11 Score=109.32 Aligned_cols=142 Identities=13% Similarity=0.024 Sum_probs=121.5
Q ss_pred hcCCHHHHHHHHHHHHHcCCChHHHHHHHHHH-H--HHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcC----
Q 024858 5 VQKDPEAAIVLFWKAINAGDRVDSALKDMAVV-M--KQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCG---- 77 (261)
Q Consensus 5 ~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~-~--~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g---- 77 (261)
..+|+++|+.+|+++. |+++.++.+||.+ + ...+++++|+..|+++...+.. ...+.||.+|. .|
T Consensus 229 ~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~----~A~~~Lg~~y~-~G~g~~ 300 (452)
T 3e4b_A 229 GTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQP----RAELLLGKLYY-EGKWVP 300 (452)
T ss_dssp SSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCH----HHHHHHHHHHH-HCSSSC
T ss_pred CCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCH----HHHHHHHHHHH-cCCCCC
Confidence 4579999999999998 8999999999999 5 5789999999999999977533 24556888887 66
Q ss_pred -CHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhh
Q 024858 78 -KVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQ----KTNFMAAEVVYQKAQMI 152 (261)
Q Consensus 78 -~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~----~g~~~eA~~~~~~al~~ 152 (261)
++++|+..|+++. . +++.++++||.+|.. ..++++|+.+|+++.+
T Consensus 301 ~d~~~A~~~~~~Aa-~----------------------------g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~- 350 (452)
T 3e4b_A 301 ADAKAAEAHFEKAV-G----------------------------REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR- 350 (452)
T ss_dssp CCHHHHHHHHHTTT-T----------------------------TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT-
T ss_pred CCHHHHHHHHHHHh-C----------------------------CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh-
Confidence 9999999999986 2 356799999999988 4599999999999987
Q ss_pred CCCchh-hhhHHHHHHH----cCCHHHHHHHHHHHHhC
Q 024858 153 DPDANK-ACNLGLCLIK----RTRYNEARSVLEDVLYG 185 (261)
Q Consensus 153 ~P~~~~-~~~L~~~l~~----~g~~~eA~~~~~~~l~~ 185 (261)
+.++. .++||.+|.. ..++++|..+|+++...
T Consensus 351 -~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~ 387 (452)
T 3e4b_A 351 -NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQ 387 (452)
T ss_dssp -TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTT
T ss_pred -hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHC
Confidence 46677 8899999985 46999999999999986
No 181
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.32 E-value=1e-11 Score=110.94 Aligned_cols=115 Identities=10% Similarity=0.033 Sum_probs=103.6
Q ss_pred hhhcCCHHHHHHHHHHHHH----------------cCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHH
Q 024858 3 QLVQKDPEAAIVLFWKAIN----------------AGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLD 66 (261)
Q Consensus 3 ~~~~~~~~~A~~~~~~al~----------------~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~ 66 (261)
.+..|++++|+..|+++++ .+|....++.++|.++..+|++++|+..+++++.++|+++ ...
T Consensus 233 ~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~--~a~ 310 (370)
T 1ihg_A 233 FFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNT--KAL 310 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCH--HHH
T ss_pred HHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhH--HHH
Confidence 4578999999999999998 7888999999999999999999999999999999999853 456
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 024858 67 NVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVV 145 (261)
Q Consensus 67 ~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~ 145 (261)
..+|.+|...|++++|+..|++++++. |+++.++..++.++..+++++++.+.
T Consensus 311 ~~lg~~~~~~g~~~eA~~~l~~Al~l~--------------------------P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 311 YRRAQGWQGLKEYDQALADLKKAQEIA--------------------------PEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhC--------------------------CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 669999999999999999999999974 45678999999999999999988764
No 182
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.32 E-value=9.6e-13 Score=95.30 Aligned_cols=91 Identities=13% Similarity=0.040 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 024858 65 LDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEV 144 (261)
Q Consensus 65 ~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~ 144 (261)
....+|.++...|++++|+..|++++++. |+++.++.++|.+|..+|++++|+.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~--------------------------p~~~~~~~~lg~~~~~~g~~~~A~~ 59 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITAQ--------------------------PQNPVGYSNKAMALIKLGEYTQAIQ 59 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------------------------CCCHHHHHHHHHHHHHhcCHHHHHH
Confidence 44558889999999999999999999874 4567889999999999999999999
Q ss_pred HHHHHHhhCCCc------hh-hhhHHHHHHHcCCHHHHHHHHHH
Q 024858 145 VYQKAQMIDPDA------NK-ACNLGLCLIKRTRYNEARSVLED 181 (261)
Q Consensus 145 ~~~~al~~~P~~------~~-~~~L~~~l~~~g~~~eA~~~~~~ 181 (261)
.|+++++++|++ .. +..+|.++..+|++++|+..+++
T Consensus 60 ~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 60 MCQQGLRYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHTSCSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence 999999999998 66 77889999888887777665544
No 183
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.32 E-value=8.7e-12 Score=90.00 Aligned_cols=67 Identities=18% Similarity=0.102 Sum_probs=63.7
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 119 RQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 119 ~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
+|+++.+++++|.+|..+|++++|+..|+++++++|+++. ++++|.+|..+|++++|+..|++++..
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5889999999999999999999999999999999999999 999999999999999999999999986
No 184
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.30 E-value=1.3e-11 Score=90.67 Aligned_cols=66 Identities=24% Similarity=0.132 Sum_probs=63.5
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 120 QETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 120 p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
|+++.++.++|.+|..+|++++|+..|++++.++|++.. ++++|.++..+|++++|+..|++++..
T Consensus 16 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 16 TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 567889999999999999999999999999999999998 999999999999999999999999986
No 185
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.29 E-value=5.3e-11 Score=82.89 Aligned_cols=80 Identities=30% Similarity=0.328 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 024858 65 LDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEV 144 (261)
Q Consensus 65 ~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~ 144 (261)
....+|.+|...|++++|+..|++++++. |+++.++.++|.+|..+|++++|+.
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~--------------------------~~~~~~~~~l~~~~~~~~~~~~A~~ 64 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD--------------------------PNNAEAWYNLGNAYYKQGDYDEAIE 64 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC--------------------------CCCHHHHHHHHHHHHHHhhHHHHHH
Confidence 45557888888888888888888888763 3456788888888888888888888
Q ss_pred HHHHHHhhCCCchh-hhhHHHHHHHcC
Q 024858 145 VYQKAQMIDPDANK-ACNLGLCLIKRT 170 (261)
Q Consensus 145 ~~~~al~~~P~~~~-~~~L~~~l~~~g 170 (261)
.|+++++++|++.. +.++|.++..+|
T Consensus 65 ~~~~a~~~~p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 65 YYQKALELDPNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHhcC
Confidence 88888888888887 888888887654
No 186
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.29 E-value=1.3e-11 Score=116.29 Aligned_cols=138 Identities=8% Similarity=-0.018 Sum_probs=123.7
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcC--CcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcC-CHHHHHHH
Q 024858 9 PEAAIVLFWKAINAGDRVDSALKDMAVVMKQLD--RSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCG-KVEEQIEM 85 (261)
Q Consensus 9 ~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g--~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g-~~~eA~~~ 85 (261)
+++++.++.+++..+|++..+|+.-+.++...| +++++++.++++++.+|.+. .+++.-+.++...| +++++++.
T Consensus 89 ~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~--~aW~~R~~~l~~l~~~~~~el~~ 166 (567)
T 1dce_A 89 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNF--HCWDYRRFVAAQAAVAPAEELAF 166 (567)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccc--cHHHHHHHHHHHcCCChHHHHHH
Confidence 899999999999999999999999999999999 66999999999999999853 34444677778889 99999999
Q ss_pred HHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHh
Q 024858 86 LKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQK--------------TNFMAAEVVYQKAQM 151 (261)
Q Consensus 86 ~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~--------------g~~~eA~~~~~~al~ 151 (261)
+.++++.+ |++..+|++.|.++... +.+++|++++.+|+.
T Consensus 167 ~~~~I~~~--------------------------p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~ 220 (567)
T 1dce_A 167 TDSLITRN--------------------------FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF 220 (567)
T ss_dssp HHTTTTTT--------------------------CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHC--------------------------CCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHh
Confidence 99988864 46778999999999885 668999999999999
Q ss_pred hCCCchh-hhhHHHHHHHcCCHHH
Q 024858 152 IDPDANK-ACNLGLCLIKRTRYNE 174 (261)
Q Consensus 152 ~~P~~~~-~~~L~~~l~~~g~~~e 174 (261)
++|++.. |+.++.++...|++++
T Consensus 221 ~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 221 TDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred hCCCCccHHHHHHHHHhcCCCccc
Confidence 9999999 9999999999999766
No 187
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.28 E-value=4e-11 Score=88.04 Aligned_cols=82 Identities=9% Similarity=-0.046 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 024858 11 AAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKL 90 (261)
Q Consensus 11 ~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al 90 (261)
+|+..|+++++.+|+++.++..+|.++...|++++|+..+++++..+|+++ .....+|.+|...|++++|+..|++++
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYS--VAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcH--HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999999999999999853 355669999999999999999999999
Q ss_pred Hhhc
Q 024858 91 RLIY 94 (261)
Q Consensus 91 ~l~~ 94 (261)
++.|
T Consensus 81 ~~~~ 84 (115)
T 2kat_A 81 AAAQ 84 (115)
T ss_dssp HHHH
T ss_pred Hhcc
Confidence 9865
No 188
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.28 E-value=4.3e-11 Score=110.71 Aligned_cols=131 Identities=16% Similarity=0.059 Sum_probs=103.6
Q ss_pred hcCCHHHHHHHHHHHHH-----cCCCh---HHHHHHHHHHHHHcCCcHHHHHHHHHHHhc-----CCchhH-HHHHHHHH
Q 024858 5 VQKDPEAAIVLFWKAIN-----AGDRV---DSALKDMAVVMKQLDRSEEAIEAIKSFRGL-----CSKQSQ-ESLDNVLI 70 (261)
Q Consensus 5 ~~~~~~~A~~~~~~al~-----~~p~~---~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~-----~P~~~~-~~~~~~L~ 70 (261)
.+|++++|+.+|++++. ++|++ ..++.+||.+|..+|++++|+.++++++.. +|+++. ....+.||
T Consensus 321 ~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 400 (490)
T 3n71_A 321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAG 400 (490)
T ss_dssp TTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 58999999999999996 45555 566889999999999999999999998753 455332 23457799
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 024858 71 DLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQ 150 (261)
Q Consensus 71 ~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al 150 (261)
.+|..+|++++|+.+|++++++.. ...+..|+ ...++..+|+.++..+|++++|+..|+++.
T Consensus 401 ~~~~~~G~~~eA~~~~~~Al~i~~---------~~lG~~Hp---------~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~ 462 (490)
T 3n71_A 401 LTNWHAGHIEVGHGMICKAYAILL---------VTHGPSHP---------ITKDLEAMRMQTEMELRMFRQNEFMYHKMR 462 (490)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHH---------HHTCTTSH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHH---------HHhCCCCh---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999842 11111222 224467899999999999999999999987
Q ss_pred hhC
Q 024858 151 MID 153 (261)
Q Consensus 151 ~~~ 153 (261)
+..
T Consensus 463 ~~~ 465 (490)
T 3n71_A 463 EAA 465 (490)
T ss_dssp HHH
T ss_pred HHH
Confidence 643
No 189
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.25 E-value=1.1e-10 Score=101.36 Aligned_cols=145 Identities=13% Similarity=0.135 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc-ch--hhhc-----
Q 024858 29 ALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIY-QG--EAFN----- 100 (261)
Q Consensus 29 al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~-~~--~~~~----- 100 (261)
++..++.-+. ++ |+..+++.+...+.+ ... ..++|.+|...|++++|+..+.+.+...+ .+ +++.
T Consensus 73 a~~~la~~~~--~~---a~~~l~~l~~~~~~~-~~~-~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi 145 (310)
T 3mv2_B 73 VLDLYVQFLD--TK---NIEELENLLKDKQNS-PYE-LYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEV 145 (310)
T ss_dssp HHHHHHHHHT--TT---CCHHHHHTTTTSCCC-HHH-HHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHH
T ss_pred HHHHHHHHhc--cc---HHHHHHHHHhcCCCC-cHH-HHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHH
Confidence 4444554442 33 889999888775442 232 35799999999999999999999977543 11 1110
Q ss_pred ----CcchHHHhhchhhhhhhcCCC----cHHHHHHH--HHHHHHcC--CHHHHHHHHHHHHhhCCCch--h-hhhHHHH
Q 024858 101 ----GKPTKTARSHGKKFQVSVRQE----TSRLLGNL--AWAYMQKT--NFMAAEVVYQKAQMIDPDAN--K-ACNLGLC 165 (261)
Q Consensus 101 ----~~~~~~~~~~~~~~~~~l~p~----~~~~~~~L--g~~~~~~g--~~~eA~~~~~~al~~~P~~~--~-~~~L~~~ 165 (261)
|+. ..++..-+.+ ..+.|+ ...++.+| ||+...+| ++.+|..+|+++....|+.. . .++ +
T Consensus 146 ~L~~~r~-d~A~k~l~~~-~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~ 220 (310)
T 3mv2_B 146 ALLNNNV-STASTIFDNY-TNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---L 220 (310)
T ss_dssp HHHTTCH-HHHHHHHHHH-HHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---H
T ss_pred HHHCCCH-HHHHHHHHHH-HhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---H
Confidence 111 1111110001 244552 23455555 55577777 99999999999999888733 3 344 8
Q ss_pred HHHcCCHHHHHHHHHHHHhC
Q 024858 166 LIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 166 l~~~g~~~eA~~~~~~~l~~ 185 (261)
++.+|++++|...++.++..
T Consensus 221 ~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 221 HLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp HHHHTCHHHHHHHHHHHHSH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999988774
No 190
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.22 E-value=2.4e-10 Score=87.59 Aligned_cols=113 Identities=17% Similarity=0.133 Sum_probs=83.8
Q ss_pred hcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH----cCCHH
Q 024858 5 VQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKK----CGKVE 80 (261)
Q Consensus 5 ~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~----~g~~~ 80 (261)
+++|+++|+.+|+++.+.++..+ . ||.+|...+..++|+..|+++...+.. ...+.||.+|.. .++++
T Consensus 7 ~~~d~~~A~~~~~~aa~~g~~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~----~a~~~Lg~~y~~G~g~~~d~~ 78 (138)
T 1klx_A 7 VKKDLKKAIQYYVKACELNEMFG--C--LSLVSNSQINKQKLFQYLSKACELNSG----NGCRFLGDFYENGKYVKKDLR 78 (138)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTH--H--HHHHTCTTSCHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHCSSSCCCHH
T ss_pred CccCHHHHHHHHHHHHcCCCHhh--h--HHHHHHcCCCHHHHHHHHHHHHcCCCH----HHHHHHHHHHHcCCCCCccHH
Confidence 35677888888888887764433 3 888888878888888888888776432 244557778877 78888
Q ss_pred HHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhC
Q 024858 81 EQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQ----KTNFMAAEVVYQKAQMID 153 (261)
Q Consensus 81 eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~----~g~~~eA~~~~~~al~~~ 153 (261)
+|+..|+++.+. .++.+..+||.+|.. .+++++|+.+|++|.+..
T Consensus 79 ~A~~~~~~Aa~~----------------------------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 79 KAAQYYSKACGL----------------------------NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHHT----------------------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcC----------------------------CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 888888887765 245677888888888 788888888888887763
No 191
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.21 E-value=9e-12 Score=90.06 Aligned_cols=101 Identities=15% Similarity=0.020 Sum_probs=83.0
Q ss_pred hHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchH
Q 024858 26 VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTK 105 (261)
Q Consensus 26 ~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~ 105 (261)
.+.++..+|.++...|++++|+..|++++..+|+++ .+...+|.+|...|++++|+..|++++++.|....
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~------- 73 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNP--VGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEH------- 73 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTS-------
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccH-------
Confidence 467899999999999999999999999999999853 45566999999999999999999999998642100
Q ss_pred HHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 024858 106 TARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQK 148 (261)
Q Consensus 106 ~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~ 148 (261)
.. ....++.++|.++..+|++++|+..+++
T Consensus 74 ------~~-------~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 74 ------VA-------IRSKLQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp ------HH-------HHHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred ------HH-------HHHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence 00 0156889999999999999888776654
No 192
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.18 E-value=3e-10 Score=78.92 Aligned_cols=86 Identities=21% Similarity=0.160 Sum_probs=75.2
Q ss_pred CChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcc
Q 024858 24 DRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKP 103 (261)
Q Consensus 24 p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~ 103 (261)
|..+.++..+|.++...|++++|+..+++++..+|+++ .....+|.+|...|++++|+..|++++++.
T Consensus 6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---------- 73 (91)
T 1na3_A 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA--EAWYNLGNAYYKQGDYDEAIEYYQKALELD---------- 73 (91)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------
T ss_pred cccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHHhhHHHHHHHHHHHHhcC----------
Confidence 35678899999999999999999999999999999853 355669999999999999999999999874
Q ss_pred hHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcC
Q 024858 104 TKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKT 137 (261)
Q Consensus 104 ~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g 137 (261)
|+++.++.++|.++..+|
T Consensus 74 ----------------p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 74 ----------------PNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp ----------------TTCHHHHHHHHHHHHHHC
T ss_pred ----------------CCCHHHHHHHHHHHHhcC
Confidence 456789999999998765
No 193
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.16 E-value=7e-10 Score=98.00 Aligned_cols=137 Identities=12% Similarity=0.014 Sum_probs=120.0
Q ss_pred CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHc-C-CcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHH-----
Q 024858 8 DPEAAIVLFWKAINAGDRVDSALKDMAVVMKQL-D-RSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVE----- 80 (261)
Q Consensus 8 ~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~-g-~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~----- 80 (261)
++++++.++.+++..+|++..+|+.-+.++... + +++++++.+++++..+|.+. .+++.-+.++.+.|+++
T Consensus 104 ~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy--~AW~~R~wvl~~l~~~~~~~~~ 181 (349)
T 3q7a_A 104 SLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNY--HTWAYLHWLYSHFSTLGRISEA 181 (349)
T ss_dssp CHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCH--HHHHHHHHHHHHHHHTTCCCHH
T ss_pred hHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHhccccccchh
Confidence 699999999999999999999999999999988 8 99999999999999999853 23333555666777777
Q ss_pred ---HHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCC-------HHHHHHHHHHHH
Q 024858 81 ---EQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTN-------FMAAEVVYQKAQ 150 (261)
Q Consensus 81 ---eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~-------~~eA~~~~~~al 150 (261)
++++.+.++++.+ |.+..+|++.+.++...++ +++++.++.+++
T Consensus 182 ~~~eELe~~~k~I~~d--------------------------p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI 235 (349)
T 3q7a_A 182 QWGSELDWCNEMLRVD--------------------------GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSI 235 (349)
T ss_dssp HHHHHHHHHHHHHHHC--------------------------TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhC--------------------------CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHH
Confidence 8999999988874 4567899999999999987 799999999999
Q ss_pred hhCCCchh-hhhHHHHHHHcCCH
Q 024858 151 MIDPDANK-ACNLGLCLIKRTRY 172 (261)
Q Consensus 151 ~~~P~~~~-~~~L~~~l~~~g~~ 172 (261)
.++|+|.. |+.+..++...|+-
T Consensus 236 ~~~P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 236 HLIPHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCC
T ss_pred HhCCCCHHHHHHHHHHHHhcCCC
Confidence 99999999 99999999888874
No 194
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.14 E-value=9.4e-10 Score=110.87 Aligned_cols=155 Identities=13% Similarity=0.089 Sum_probs=112.8
Q ss_pred CCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024858 7 KDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEML 86 (261)
Q Consensus 7 ~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~ 86 (261)
|++++|.+++.++ +.+.+|..+|..+...|+++|||..|.++ -+|+ .+...+..+.+.|++++|++.|
T Consensus 1090 ~nldrAiE~Aerv-----n~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~s-----ay~eVa~~~~~lGkyEEAIeyL 1157 (1630)
T 1xi4_A 1090 GNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPS-----SYMEVVQAANTSGNWEELVKYL 1157 (1630)
T ss_pred hhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChH-----HHHHHHHHHHHcCCHHHHHHHH
Confidence 4455555555433 55889999999999999999999999875 2232 2334788999999999999999
Q ss_pred HHHHHhhcch-----hhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchhhhh
Q 024858 87 KRKLRLIYQG-----EAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKACN 161 (261)
Q Consensus 87 ~~al~l~~~~-----~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~ 161 (261)
..+.+..+.. .++. ..+. .....+..-++..+...+.++|..+...|+|++|..+|.+| ..|..
T Consensus 1158 ~mArk~~~e~~Idt~Lafa--YAKl--~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-------~ny~r 1226 (1630)
T 1xi4_A 1158 QMARKKARESYVETELIFA--LAKT--NRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-------SNFGR 1226 (1630)
T ss_pred HHHHhhcccccccHHHHHH--HHhh--cCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-------hHHHH
Confidence 9998875321 1111 0000 00011111123334456678999999999999999999996 24899
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Q 024858 162 LGLCLIKRTRYNEARSVLEDVLY 184 (261)
Q Consensus 162 L~~~l~~~g~~~eA~~~~~~~l~ 184 (261)
+|.+|.++|++++|++.++++..
T Consensus 1227 LA~tLvkLge~q~AIEaarKA~n 1249 (1630)
T 1xi4_A 1227 LASTLVHLGEYQAAVDGARKANS 1249 (1630)
T ss_pred HHHHHHHhCCHHHHHHHHHHhCC
Confidence 99999999999999999999855
No 195
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.12 E-value=1.1e-09 Score=83.84 Aligned_cols=109 Identities=16% Similarity=0.041 Sum_probs=96.8
Q ss_pred CCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCC
Q 024858 41 DRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQ 120 (261)
Q Consensus 41 g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p 120 (261)
+++++|+..|+++...++..+ . ||.+|...+.+++|+..|+++.+.
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~a----~--lg~~y~~g~~~~~A~~~~~~Aa~~---------------------------- 54 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMFG----C--LSLVSNSQINKQKLFQYLSKACEL---------------------------- 54 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTTH----H--HHHHTCTTSCHHHHHHHHHHHHHT----------------------------
T ss_pred cCHHHHHHHHHHHHcCCCHhh----h--HHHHHHcCCCHHHHHHHHHHHHcC----------------------------
Confidence 468899999999998875532 2 888999999999999999999886
Q ss_pred CcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHH----cCCHHHHHHHHHHHHhC
Q 024858 121 ETSRLLGNLAWAYMQ----KTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIK----RTRYNEARSVLEDVLYG 185 (261)
Q Consensus 121 ~~~~~~~~Lg~~~~~----~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~----~g~~~eA~~~~~~~l~~ 185 (261)
+++.+.++||.+|.. .+++++|+.+|++|.+. .++. .++||.+|.. .+++++|+.+|+++...
T Consensus 55 g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 55 NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 256799999999999 99999999999999987 6677 8999999999 89999999999999986
No 196
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.09 E-value=5.2e-10 Score=80.49 Aligned_cols=71 Identities=10% Similarity=0.082 Sum_probs=62.9
Q ss_pred cCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 024858 22 AGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIY 94 (261)
Q Consensus 22 ~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~ 94 (261)
.+|+++.++..+|.++..+|++++|+..++++++++|+++ ..+..+|.+|...|++++|+..|++++++.+
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~--~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYV--GTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence 4799999999999999999999999999999999999854 3566699999999999999999999999854
No 197
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.09 E-value=3.1e-09 Score=107.13 Aligned_cols=170 Identities=16% Similarity=0.078 Sum_probs=114.9
Q ss_pred chhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHH
Q 024858 2 VQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEE 81 (261)
Q Consensus 2 ~~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~e 81 (261)
+++..|++++|+..|.+| ++++++..+|..+.+.|++++|++.|..+++..|+.. +...+|.+|.+.+++++
T Consensus 1114 Aql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~---Idt~LafaYAKl~rlee 1185 (1630)
T 1xi4_A 1114 AQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESY---VETELIFALAKTNRLAE 1185 (1630)
T ss_pred HHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccccc---ccHHHHHHHHhhcCHHH
Confidence 467889999999999886 7788999999999999999999999999998776521 12236777778888875
Q ss_pred HHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-------
Q 024858 82 QIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDP------- 154 (261)
Q Consensus 82 A~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P------- 154 (261)
++.|.+... ...+.. ........+....-..--..+..|..+|.+|..+|++++|++++++|....+
T Consensus 1186 -le~fI~~~n----~ad~~~-iGd~le~eg~YeeA~~~Y~kA~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~a 1259 (1630)
T 1xi4_A 1186 -LEEFINGPN----NAHIQQ-VGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFA 1259 (1630)
T ss_pred -HHHHHhCCC----HHHHHH-HHHHHHhcCCHHHHHHHHHhhhHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHH
Confidence 433322111 011100 0000111111000000001235778889999999999999999988855544
Q ss_pred ------------------Cchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 155 ------------------DANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 155 ------------------~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
.+++ ...++..|...|.+++|+.++++++..
T Consensus 1260 cve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~L 1309 (1630)
T 1xi4_A 1260 CVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL 1309 (1630)
T ss_pred HhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 1333 446788999999999999999999987
No 198
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.08 E-value=4.9e-10 Score=100.10 Aligned_cols=162 Identities=9% Similarity=0.014 Sum_probs=127.3
Q ss_pred hhcCCHHHHHHHHHHHHHcCCCh------HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCc----hhHHHHHHHHHHHH
Q 024858 4 LVQKDPEAAIVLFWKAINAGDRV------DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK----QSQESLDNVLIDLY 73 (261)
Q Consensus 4 ~~~~~~~~A~~~~~~al~~~p~~------~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~----~~~~~~~~~L~~ly 73 (261)
...|++++|..+|.+++...+.. ..+...+|.++...|++++|+..++.++...+. .-...+...||.+|
T Consensus 66 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 145 (434)
T 4b4t_Q 66 VTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLH 145 (434)
T ss_dssp HHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHH
Confidence 46799999999999998754432 234556899999999999999999998765442 11334566799999
Q ss_pred HHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 024858 74 KKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMID 153 (261)
Q Consensus 74 ~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~ 153 (261)
..+|++++|+..+++++...... . -+|...+++.++|.+|..+|++++|...|++++.+.
T Consensus 146 ~~~g~~~~A~~~l~~~~~~~~~~--------------~------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 205 (434)
T 4b4t_Q 146 YQKKQYKDSLALINDLLREFKKL--------------D------DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAA 205 (434)
T ss_dssp HHHTCHHHHHHHHHHHHHHHTTS--------------S------CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHccChHHHHHHHHHHHHHHHhc--------------c------cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHh
Confidence 99999999999999998863210 0 012345789999999999999999999999999875
Q ss_pred CC---ch----h-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 154 PD---AN----K-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 154 P~---~~----~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
|. .. . +..+|.++...|++++|...|.+++..
T Consensus 206 ~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 206 NSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp HHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred hcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 42 21 2 457899999999999999999999874
No 199
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.07 E-value=4.3e-10 Score=79.95 Aligned_cols=83 Identities=17% Similarity=0.184 Sum_probs=71.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHH-HHHHHHHHHHHcCCHHHHHHHHH
Q 024858 69 LIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSR-LLGNLAWAYMQKTNFMAAEVVYQ 147 (261)
Q Consensus 69 L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~-~~~~Lg~~~~~~g~~~eA~~~~~ 147 (261)
.|..+...|++++|+..|++++++. |+++. ++.++|.+|..+|++++|+..|+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~--------------------------p~~~~~~~~~lg~~~~~~~~~~~A~~~~~ 59 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE--------------------------PVGKDEAYYLMGNAYRKLGDWQKALNNYQ 59 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC--------------------------SSTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC--------------------------CCcHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 6777889999999999999999874 45677 99999999999999999999999
Q ss_pred HHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 148 KAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 148 ~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
++++++|++.. +.+ +.+.+++..|++++..
T Consensus 60 ~al~~~p~~~~~~~~--------~~~~~a~~~~~~~~~~ 90 (99)
T 2kc7_A 60 SAIELNPDSPALQAR--------KMVMDILNFYNKDMYN 90 (99)
T ss_dssp HHHHHCTTSTHHHHH--------HHHHHHHHHHCCTTHH
T ss_pred HHHhcCCCcHHHHHH--------HHHHHHHHHHHHHhcc
Confidence 99999999987 543 6677888888877665
No 200
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=99.05 E-value=5.8e-10 Score=101.57 Aligned_cols=103 Identities=11% Similarity=-0.039 Sum_probs=80.9
Q ss_pred HHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-
Q 024858 74 KKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMI- 152 (261)
Q Consensus 74 ~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~- 152 (261)
...|+|++|+..|+++|++... .....| |+...+++|||.+|..+|+|++|+.+|+++|++
T Consensus 309 ~~~g~~~eA~~~~~~~L~i~~~---------~lg~~H---------p~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~ 370 (433)
T 3qww_A 309 KHYKSPSELLEICELSQEKMSS---------VFEDSN---------VYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPY 370 (433)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTT---------TBCTTS---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHhhC---------ccChhc---------hHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Confidence 3568999999999999998420 011111 123457899999999999999999999999975
Q ss_pred ----CCCch---h-hhhHHHHHHHcCCHHHHHHHHHHHHhCC--CCCCcchh
Q 024858 153 ----DPDAN---K-ACNLGLCLIKRTRYNEARSVLEDVLYGR--IPGCEDGR 194 (261)
Q Consensus 153 ----~P~~~---~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~--~~~~~~~~ 194 (261)
.|+++ . ++|||.+|..+|++++|+.+|++++... ..+++|+.
T Consensus 371 ~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~ 422 (433)
T 3qww_A 371 SKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPY 422 (433)
T ss_dssp HHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHH
T ss_pred HHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChH
Confidence 46666 3 6799999999999999999999999962 24666765
No 201
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.03 E-value=3.7e-10 Score=80.30 Aligned_cols=92 Identities=13% Similarity=0.143 Sum_probs=66.5
Q ss_pred HHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhc
Q 024858 31 KDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSH 110 (261)
Q Consensus 31 ~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~ 110 (261)
...|.++...|++++|+..+++++..+|+++. .....+|.+|...|++++|+..|++++++.|
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p---------------- 66 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKD-EAYYLMGNAYRKLGDWQKALNNYQSAIELNP---------------- 66 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHH-HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT----------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC----------------
Confidence 45677888888888888888888888887432 1455578888888888888888888887643
Q ss_pred hhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch
Q 024858 111 GKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN 157 (261)
Q Consensus 111 ~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~ 157 (261)
+++.++.+ +.+.+++..|++++..+|++.
T Consensus 67 ----------~~~~~~~~--------~~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 67 ----------DSPALQAR--------KMVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp ----------TSTHHHHH--------HHHHHHHHHHCCTTHHHHCCS
T ss_pred ----------CcHHHHHH--------HHHHHHHHHHHHHhccCcccc
Confidence 33444433 567778888888887777664
No 202
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.02 E-value=5.9e-11 Score=107.67 Aligned_cols=155 Identities=12% Similarity=0.042 Sum_probs=37.1
Q ss_pred cCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHH
Q 024858 6 QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEM 85 (261)
Q Consensus 6 ~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~ 85 (261)
-|++++|..++++. +.+.+|..||..+.+.|++++||+.|.++ .+|. .....+..+...|++++|+.+
T Consensus 16 ~~~ld~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika--~D~~-----~y~~V~~~ae~~g~~EeAi~y 83 (449)
T 1b89_A 16 IGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPS-----SYMEVVQAANTSGNWEELVKY 83 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcC--CCHH-----HHHHHHHHHHhCCCHHHHHHH
Confidence 36789999999987 34569999999999999999999999764 2222 233456677889999999999
Q ss_pred HHHHHHhhcchhhhc---CcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhh
Q 024858 86 LKRKLRLIYQGEAFN---GKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACN 161 (261)
Q Consensus 86 ~~~al~l~~~~~~~~---~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~ 161 (261)
++.+.+..++..... .-..+.. .......+.-.|+ ..+|.++|..+...|+|++|..+|.++ . +..
T Consensus 84 l~~ark~~~~~~i~~~Li~~Y~Klg-~l~e~e~f~~~pn-~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~ 153 (449)
T 1b89_A 84 LQMARKKARESYVETELIFALAKTN-RLAELEEFINGPN-NAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGR 153 (449)
T ss_dssp --------------------------CHHHHTTTTTCC-----------------CTTTHHHHHHHT--------TCHHH
T ss_pred HHHHHHhCccchhHHHHHHHHHHhC-CHHHHHHHHcCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHH
Confidence 999887522111110 0000100 0001111112243 459999999999999999999999977 5 889
Q ss_pred HHHHHHHcCCHHHHHHHHHHH
Q 024858 162 LGLCLIKRTRYNEARSVLEDV 182 (261)
Q Consensus 162 L~~~l~~~g~~~eA~~~~~~~ 182 (261)
||.++.++|++++|++.|+++
T Consensus 154 LA~~L~~Lg~yq~AVea~~KA 174 (449)
T 1b89_A 154 LASTLVHLGEYQAAVDGARKA 174 (449)
T ss_dssp HHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHc
Confidence 999999999999999999998
No 203
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.98 E-value=2.7e-09 Score=97.20 Aligned_cols=103 Identities=14% Similarity=0.060 Sum_probs=79.4
Q ss_pred HHcCCcHHHHHHHHHHHh-----cCCchhH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhch
Q 024858 38 KQLDRSEEAIEAIKSFRG-----LCSKQSQ-ESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHG 111 (261)
Q Consensus 38 ~~~g~~~eAi~~~~~~~~-----~~P~~~~-~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~ 111 (261)
...|++++|+..+++++. ++|+++. ....++||.+|..+|+|++|+.+|+++|++.. ...+..|
T Consensus 309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~---------~~lG~~H- 378 (433)
T 3qww_A 309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYS---------KHYPVYS- 378 (433)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---------HHSCSSC-
T ss_pred hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH---------HHcCCCC-
Confidence 356899999999999876 4565432 23457799999999999999999999999842 0111112
Q ss_pred hhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCchh
Q 024858 112 KKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMI-----DPDANK 158 (261)
Q Consensus 112 ~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~-----~P~~~~ 158 (261)
|+....++|||.+|..+|++++|+.+|++|+++ .|+++.
T Consensus 379 --------p~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~ 422 (433)
T 3qww_A 379 --------LNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPY 422 (433)
T ss_dssp --------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHH
T ss_pred --------hHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChH
Confidence 223457899999999999999999999999986 477765
No 204
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.94 E-value=1.3e-08 Score=72.65 Aligned_cols=70 Identities=14% Similarity=0.066 Sum_probs=64.4
Q ss_pred CCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 024858 119 RQETSRLLGNLAWAYMQKTN---FMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIP 188 (261)
Q Consensus 119 ~p~~~~~~~~Lg~~~~~~g~---~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~~~ 188 (261)
.|++++++..+|.++...++ .++|...+++|++++|+++. .+.||..+.+.|+|++|+.++++++...+.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 47889999999999976666 79999999999999999999 999999999999999999999999998443
No 205
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.94 E-value=7.5e-09 Score=91.67 Aligned_cols=122 Identities=17% Similarity=0.070 Sum_probs=66.3
Q ss_pred CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHc---C-CcHHHHH----HHHHH--HhcCCchhHHHHHHHHHHHHHHcC
Q 024858 8 DPEAAIVLFWKAINAGDRVDSALKDMAVVMKQL---D-RSEEAIE----AIKSF--RGLCSKQSQESLDNVLIDLYKKCG 77 (261)
Q Consensus 8 ~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~---g-~~~eAi~----~~~~~--~~~~P~~~~~~~~~~L~~ly~~~g 77 (261)
+..+|+.+|++|++.+|+++.++..++.++... + .....+. .++.+ +..+|.++ .....++..+...|
T Consensus 214 ~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a--~~~~alal~~l~~g 291 (372)
T 3ly7_A 214 SLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLS--IIYQIKAVSALVKG 291 (372)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCH--HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCH--HHHHHHHHHHHhCC
Confidence 346788888888888888887777777766421 1 0111111 11111 12334322 22333444444556
Q ss_pred CHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch
Q 024858 78 KVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN 157 (261)
Q Consensus 78 ~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~ 157 (261)
++++|+..+++++.++| +..++..+|.++.-.|++++|++.|.+|+.++|...
T Consensus 292 d~d~A~~~l~rAl~Ln~---------------------------s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 292 KTDESYQAINTGIDLEM---------------------------SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp CHHHHHHHHHHHHHHCC---------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred CHHHHHHHHHHHHhcCC---------------------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 66666666666666532 123445566666666666666666666666666554
Q ss_pred h
Q 024858 158 K 158 (261)
Q Consensus 158 ~ 158 (261)
.
T Consensus 345 t 345 (372)
T 3ly7_A 345 T 345 (372)
T ss_dssp H
T ss_pred h
Confidence 3
No 206
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.91 E-value=4.5e-09 Score=95.60 Aligned_cols=116 Identities=13% Similarity=-0.029 Sum_probs=86.4
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 024858 72 LYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQM 151 (261)
Q Consensus 72 ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~ 151 (261)
-+..+|++++|+..|+++|++... .....| |....++.|||.+|..+|+|++|+.+|++++.
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~---------~lg~~h---------~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~ 357 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSE---------RLPDIN---------IYQLKVLDCAMDACINLGLLEEALFYGTRTME 357 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSC---------CCCTTS---------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccC---------cCCccc---------hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 346789999999999999987320 001111 12345889999999999999999999999997
Q ss_pred h-----CCCchh----hhhHHHHHHHcCCHHHHHHHHHHHHhCC--CCCCcchhhHHHHHHHHHHH
Q 024858 152 I-----DPDANK----ACNLGLCLIKRTRYNEARSVLEDVLYGR--IPGCEDGRTRKRAEELLLEL 206 (261)
Q Consensus 152 ~-----~P~~~~----~~~L~~~l~~~g~~~eA~~~~~~~l~~~--~~~~~~~~~~~~a~~~l~~l 206 (261)
+ .|+++. ++|||.+|..+|++++|+.+|++++... ..+++|+... .....|..+
T Consensus 358 i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~-~~~~~l~~~ 422 (429)
T 3qwp_A 358 PYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIE-DLILLLEEC 422 (429)
T ss_dssp HHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHH-HHHHHHHHH
T ss_pred hHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHH-HHHHHHHHH
Confidence 5 466663 5799999999999999999999999852 2366665422 244444443
No 207
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.89 E-value=1.4e-08 Score=92.33 Aligned_cols=117 Identities=14% Similarity=0.006 Sum_probs=87.6
Q ss_pred HHHHHcCCcHHHHHHHHHHHhc-----CCchh-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHh
Q 024858 35 VVMKQLDRSEEAIEAIKSFRGL-----CSKQS-QESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTAR 108 (261)
Q Consensus 35 ~~~~~~g~~~eAi~~~~~~~~~-----~P~~~-~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~ 108 (261)
.-+..+|++++|+..+++++.. .|+++ .....+.|+.+|..+|+|++|+.+++++|++.. ...+.
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~---------~~lg~ 365 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYR---------IFFPG 365 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH---------HHSCS
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHH---------HHcCC
Confidence 3456789999999999999864 44432 223457799999999999999999999999842 00011
Q ss_pred hchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCchh----hhhHHHHHHHc
Q 024858 109 SHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMI-----DPDANK----ACNLGLCLIKR 169 (261)
Q Consensus 109 ~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~-----~P~~~~----~~~L~~~l~~~ 169 (261)
.| |+....++|||.+|..+|++++|+.+|++|+++ .|+++. ..+|+.+..++
T Consensus 366 ~H---------p~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 366 SH---------PVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI 426 (429)
T ss_dssp SC---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred CC---------hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence 11 223457899999999999999999999999985 577774 35677776543
No 208
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.86 E-value=8e-08 Score=85.08 Aligned_cols=145 Identities=10% Similarity=-0.078 Sum_probs=99.9
Q ss_pred HHHcCCChHHHHHH--HHHHHHHcC---CcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH----HcCCHHHHHHHHHHH
Q 024858 19 AINAGDRVDSALKD--MAVVMKQLD---RSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYK----KCGKVEEQIEMLKRK 89 (261)
Q Consensus 19 al~~~p~~~~al~~--Lg~~~~~~g---~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~----~~g~~~eA~~~~~~a 89 (261)
+....|.+++|+.. -|.-+...+ .+.+|+.+|+++++++|+++..... ++.+|. ..+.....+..++++
T Consensus 186 ~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~--la~a~~~~~~~~~~~~~~~~~l~~a 263 (372)
T 3ly7_A 186 LQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAE--KALVDIVRHSQHPLDEKQLAALNTE 263 (372)
T ss_dssp HHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHH--HHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred HhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHH--HHHHHHHHhccCCCchhhHHHHHHH
Confidence 34445666555443 344444433 4588999999999999996433332 333332 111112222222222
Q ss_pred HHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchhhhhHHHHHHHc
Q 024858 90 LRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKACNLGLCLIKR 169 (261)
Q Consensus 90 l~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~L~~~l~~~ 169 (261)
++. ...+...|.++.++..+|.++...|++++|+..+++|+.++|+...+..+|.++...
T Consensus 264 ~~a--------------------~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~ 323 (372)
T 3ly7_A 264 IDN--------------------IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMK 323 (372)
T ss_dssp HHH--------------------HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHT
T ss_pred HHH--------------------HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHC
Confidence 221 111345678899999999999999999999999999999998643478899999999
Q ss_pred CCHHHHHHHHHHHHhC
Q 024858 170 TRYNEARSVLEDVLYG 185 (261)
Q Consensus 170 g~~~eA~~~~~~~l~~ 185 (261)
|++++|++.|++++..
T Consensus 324 G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 324 GMNREAADAYLTAFNL 339 (372)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhc
Confidence 9999999999999998
No 209
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.82 E-value=5.9e-09 Score=94.59 Aligned_cols=139 Identities=19% Similarity=0.156 Sum_probs=88.3
Q ss_pred cCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHH
Q 024858 6 QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEM 85 (261)
Q Consensus 6 ~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~ 85 (261)
.|++++|+..|+++ +++.+|..+..++...|+++.|..+... +..+|++ +. .++.+|.+.|++++|+.+
T Consensus 161 Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad~----l~-~lv~~Yek~G~~eEai~l 229 (449)
T 1b89_A 161 LGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADE----LE-ELINYYQDRGYFEELITM 229 (449)
T ss_dssp TTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHHH----HH-HHHHHHHHTTCHHHHHHH
T ss_pred hccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHhh----HH-HHHHHHHHCCCHHHHHHH
Confidence 34555555555555 2344555555555555555555444433 2244442 11 255677888888888888
Q ss_pred HHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHH--HHcCCHHHHHHHHHHHHhhCC-----Cchh
Q 024858 86 LKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAY--MQKTNFMAAEVVYQKAQMIDP-----DANK 158 (261)
Q Consensus 86 ~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~--~~~g~~~eA~~~~~~al~~~P-----~~~~ 158 (261)
++++|.+. +.+..++..||.+| ...++..|+++.|...+.+.| .+..
T Consensus 230 Le~aL~le--------------------------~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~ 283 (449)
T 1b89_A 230 LEAALGLE--------------------------RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAH 283 (449)
T ss_dssp HHHHTTST--------------------------TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTT
T ss_pred HHHHhCCc--------------------------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 88877763 22344666677777 446778888888888888877 7777
Q ss_pred -hhhHHHHHHHcCCHHHHHHHHHH
Q 024858 159 -ACNLGLCLIKRTRYNEARSVLED 181 (261)
Q Consensus 159 -~~~L~~~l~~~g~~~eA~~~~~~ 181 (261)
|..+..+|.+.|+++.|+..+-+
T Consensus 284 ~w~e~~~ly~~~~e~d~A~~tm~~ 307 (449)
T 1b89_A 284 LWAELVFLYDKYEEYDNAIITMMN 307 (449)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhchHHHHHHHHHh
Confidence 88888888888888888776544
No 210
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.66 E-value=1.4e-07 Score=67.34 Aligned_cols=71 Identities=13% Similarity=0.017 Sum_probs=62.9
Q ss_pred CCChHHHHHHHHHHHHHcCC---cHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 024858 23 GDRVDSALKDMAVVMKQLDR---SEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQ 95 (261)
Q Consensus 23 ~p~~~~al~~Lg~~~~~~g~---~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~ 95 (261)
+|++++.+..+|.++...+. .++|..+++++++++|++ ......+|.++.+.|+|++|+..|+++++..|+
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~--~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYN--EAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 68999999999999976655 799999999999999995 345667999999999999999999999998764
No 211
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.66 E-value=5.3e-07 Score=86.43 Aligned_cols=173 Identities=13% Similarity=0.015 Sum_probs=126.3
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHH-HHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 024858 10 EAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAI-EAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKR 88 (261)
Q Consensus 10 ~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi-~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~ 88 (261)
+.....|++++...|.+++.|...+..+...|+.++|+ ..|++++..+|.+ ..++..++.+....|++++|..+|++
T Consensus 326 ~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s--~~Lwl~~a~~ee~~~~~e~aR~iyek 403 (679)
T 4e6h_A 326 ARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNS--AVLAFSLSEQYELNTKIPEIETTILS 403 (679)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 34667899999999999999999999999999999998 9999999999984 34566688899999999999999999
Q ss_pred HHHhhc----------ch-----------h--hhcCcchHHHhhch------hhhhhhc---CCCcHHHHHHHHHHHHHc
Q 024858 89 KLRLIY----------QG-----------E--AFNGKPTKTARSHG------KKFQVSV---RQETSRLLGNLAWAYMQK 136 (261)
Q Consensus 89 al~l~~----------~~-----------~--~~~~~~~~~~~~~~------~~~~~~l---~p~~~~~~~~Lg~~~~~~ 136 (261)
++...+ |. . .+. ...+..+..+ ..+...+ .+....++...+.+-...
T Consensus 404 ~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi-~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~ 482 (679)
T 4e6h_A 404 CIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYC-VYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHI 482 (679)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH-HHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhhhhhccCcchhhhhhhccchHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHh
Confidence 998531 10 0 000 0001111111 1122111 122345666666655555
Q ss_pred C-CHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 137 T-NFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 137 g-~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
| +++.|...|+++++..|+++. |...+......|+.+.|..+|++++..
T Consensus 483 ~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~ 533 (679)
T 4e6h_A 483 SKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDK 533 (679)
T ss_dssp TSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 4 488888888888888888888 777788888888888888888888886
No 212
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.65 E-value=1.1e-06 Score=75.10 Aligned_cols=102 Identities=15% Similarity=0.058 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCC--cHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHh
Q 024858 79 VEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQE--TSRLLGNLAWAYMQK-----TNFMAAEVVYQKAQM 151 (261)
Q Consensus 79 ~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~--~~~~~~~Lg~~~~~~-----g~~~eA~~~~~~al~ 151 (261)
..+|...++++++++| + +..+|..||.+|... |+.++|..+|++|++
T Consensus 179 l~~A~a~lerAleLDP--------------------------~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~ 232 (301)
T 3u64_A 179 VHAAVMMLERACDLWP--------------------------SYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR 232 (301)
T ss_dssp HHHHHHHHHHHHHHCT--------------------------THHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC--------------------------CcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH
Confidence 5677888888888754 3 345899999999995 999999999999999
Q ss_pred hCCCc-hh-hhhHHHHHHH-cCCHHHHHHHHHHHHhCCCCC-Ccc----hhhHHHHHHHHHHH
Q 024858 152 IDPDA-NK-ACNLGLCLIK-RTRYNEARSVLEDVLYGRIPG-CED----GRTRKRAEELLLEL 206 (261)
Q Consensus 152 ~~P~~-~~-~~~L~~~l~~-~g~~~eA~~~~~~~l~~~~~~-~~~----~~~~~~a~~~l~~l 206 (261)
++|+. .. .+..|..|.. +|++++|.+++++++..++.. |+. ....+++..+|..+
T Consensus 233 LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan~~~q~eA~~LL~~~ 295 (301)
T 3u64_A 233 YCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKLLVILSQKRARWLKAHV 295 (301)
T ss_dssp HCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHHHHHHHHHHHHHHTH
T ss_pred hCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHHHHHHHHh
Confidence 99975 77 8899999988 499999999999999984322 332 23334555555544
No 213
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.63 E-value=3.5e-07 Score=66.21 Aligned_cols=79 Identities=19% Similarity=0.188 Sum_probs=65.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 024858 66 DNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVV 145 (261)
Q Consensus 66 ~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~ 145 (261)
...+|..+.+.|+|..|+.-|+++++..++... ..+..++++.+||.+|.++|++++|+.+
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~-------------------~~~~~~~i~~~L~~~~~~~g~~~~A~~~ 68 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEI-------------------STIDKVSVLDYLSYAVYQQGDLDKALLL 68 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC-------------------CSSCHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCC-------------------CcccHHHHHHHHHHHHHHccCHHHHHHH
Confidence 345889999999999999999999987421110 0123567999999999999999999999
Q ss_pred HHHHHhhCCCchh-hhhHH
Q 024858 146 YQKAQMIDPDANK-ACNLG 163 (261)
Q Consensus 146 ~~~al~~~P~~~~-~~~L~ 163 (261)
++++++++|++.. ..|++
T Consensus 69 ~~~al~l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 69 TKKLLELDPEHQRANGNLK 87 (104)
T ss_dssp HHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHhhHH
Confidence 9999999999998 77776
No 214
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.58 E-value=9.9e-07 Score=84.55 Aligned_cols=179 Identities=10% Similarity=-0.009 Sum_probs=137.5
Q ss_pred hhcCCHHHHH-HHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcC-----------Cch---------hH
Q 024858 4 LVQKDPEAAI-VLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLC-----------SKQ---------SQ 62 (261)
Q Consensus 4 ~~~~~~~~A~-~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~-----------P~~---------~~ 62 (261)
...|+.++|. ..|.+|+...|.....+...+.+....|++++|.++|++++... |.+ ..
T Consensus 354 ~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~ 433 (679)
T 4e6h_A 354 GEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKL 433 (679)
T ss_dssp HHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccch
Confidence 3457778886 99999999999998888999999999999999999999998753 420 01
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcch--hhhc---------CcchHHHhhchhhhh--hhcCCCcHHHHHHH
Q 024858 63 ESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQG--EAFN---------GKPTKTARSHGKKFQ--VSVRQETSRLLGNL 129 (261)
Q Consensus 63 ~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~--~~~~---------~~~~~~~~~~~~~~~--~~l~p~~~~~~~~L 129 (261)
..++...+.+..+.|..+.|..+|.++++..+.. ..+. +...+.+ .+.+. +..-|+++..+...
T Consensus 434 ~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~A---r~ife~~Lk~~p~~~~~w~~y 510 (679)
T 4e6h_A 434 TYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTA---CKVLELGLKYFATDGEYINKY 510 (679)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHH---HHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHH---HHHHHHHHHHCCCchHHHHHH
Confidence 2245556778788999999999999999862211 1111 1100111 01122 34458889999899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCC---chh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 130 AWAYMQKTNFMAAEVVYQKAQMIDPD---ANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 130 g~~~~~~g~~~eA~~~~~~al~~~P~---~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
+......|+.+.|...|++|+...|+ ... |......-.+.|..+.+..++++++..
T Consensus 511 ~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 511 LDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK 570 (679)
T ss_dssp HHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99899999999999999999999884 345 777888888999999999999999997
No 215
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.53 E-value=1e-05 Score=74.83 Aligned_cols=152 Identities=13% Similarity=0.015 Sum_probs=117.0
Q ss_pred hcCCHHHHHHHHHHHHH--cCCChHHHHHHHHHHHHHcCC---------cHHHHHHHHHHHhc--CCchhHHHHHHHHHH
Q 024858 5 VQKDPEAAIVLFWKAIN--AGDRVDSALKDMAVVMKQLDR---------SEEAIEAIKSFRGL--CSKQSQESLDNVLID 71 (261)
Q Consensus 5 ~~~~~~~A~~~~~~al~--~~p~~~~al~~Lg~~~~~~g~---------~~eAi~~~~~~~~~--~P~~~~~~~~~~L~~ 71 (261)
..|++++|..+|..... ..|+.. ++..|-.++...++ .++|.++++++... .|+ ...++.|..
T Consensus 38 k~G~~~~A~~lf~~M~~~Gv~pd~~-tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd---~~tyn~lI~ 113 (501)
T 4g26_A 38 KKGDVLEALRLYDEARRNGVQLSQY-HYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPN---EATFTNGAR 113 (501)
T ss_dssp TSCCHHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCC---HHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHcCCCCCHh-HHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCC---HHHHHHHHH
Confidence 47899999999998876 445533 45555555554443 67889999887764 455 335677888
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 024858 72 LYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQM 151 (261)
Q Consensus 72 ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~ 151 (261)
.|.+.|++++|.+++++..+.. +.| +..+++.|-..|.+.|+.++|..+|++..+
T Consensus 114 ~~~~~g~~~~A~~l~~~M~~~g------------------------~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 114 LAVAKDDPEMAFDMVKQMKAFG------------------------IQP-RLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHTCHHHHHHHHHHHHHTT------------------------CCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHcC------------------------CCC-ccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 9999999999999999876541 112 235778888899999999999999999887
Q ss_pred h--CCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 152 I--DPDANKACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 152 ~--~P~~~~~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
. .|+...+..|-.+|.+.|+.++|.+++++....
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDL 204 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence 4 566666888999999999999999999998775
No 216
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.52 E-value=6.3e-07 Score=76.67 Aligned_cols=110 Identities=16% Similarity=0.087 Sum_probs=87.6
Q ss_pred cCCChHHHHHHHHHHHHH---c--C------CcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHc-----CCHHHHHHH
Q 024858 22 AGDRVDSALKDMAVVMKQ---L--D------RSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKC-----GKVEEQIEM 85 (261)
Q Consensus 22 ~~p~~~~al~~Lg~~~~~---~--g------~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~-----g~~~eA~~~ 85 (261)
.+|++++++.-.|.+... . | ...+|...++++++++|+..+...+..||.+|.+. |+.++|.++
T Consensus 147 ~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ 226 (301)
T 3u64_A 147 CTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTA 226 (301)
T ss_dssp CCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHH
T ss_pred cCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHH
Confidence 455567776666666532 2 2 35678889999999999843445778899999995 999999999
Q ss_pred HHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCc
Q 024858 86 LKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQ-KTNFMAAEVVYQKAQMIDPDA 156 (261)
Q Consensus 86 ~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~-~g~~~eA~~~~~~al~~~P~~ 156 (261)
|+++|+++|.+ +.++++..|..+.. +|++++|.+++++|+..+|..
T Consensus 227 ferAL~LnP~~-------------------------~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 227 FEHLTRYCSAH-------------------------DPDHHITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHCCTT-------------------------CSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred HHHHHHhCCCC-------------------------CchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 99999986511 25688899999977 599999999999999999986
No 217
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.50 E-value=1.1e-06 Score=68.25 Aligned_cols=80 Identities=13% Similarity=0.158 Sum_probs=67.2
Q ss_pred CCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhC-C-Cchh-hhhHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcch
Q 024858 120 QETSRLLGNLAWAYMQKT---NFMAAEVVYQKAQMID-P-DANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDG 193 (261)
Q Consensus 120 p~~~~~~~~Lg~~~~~~g---~~~eA~~~~~~al~~~-P-~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~ 193 (261)
|.+.++.+++||++.+.+ +.++++..++++++.+ | ++.+ +++||..+.++|+|++|.+++++++.. +|.+.
T Consensus 29 ~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i---eP~n~ 105 (152)
T 1pc2_A 29 SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT---EPQNN 105 (152)
T ss_dssp CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH---CTTCH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCCCH
Confidence 456789999999999998 6679999999999999 7 4456 899999999999999999999999998 56554
Q ss_pred hhHHHHHHHHHHH
Q 024858 194 RTRKRAEELLLEL 206 (261)
Q Consensus 194 ~~~~~a~~~l~~l 206 (261)
+ |.++...+
T Consensus 106 Q----A~~Lk~~i 114 (152)
T 1pc2_A 106 Q----AKELERLI 114 (152)
T ss_dssp H----HHHHHHHH
T ss_pred H----HHHHHHHH
Confidence 3 55554444
No 218
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.35 E-value=4.4e-06 Score=60.29 Aligned_cols=63 Identities=11% Similarity=0.013 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------CCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 123 SRLLGNLAWAYMQKTNFMAAEVVYQKAQMID-------PDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 123 ~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~-------P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
+.-.+.||..+..+|+|..|+..|++|+... +.... +.+||.++.++|++++|+.++++++..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 3456899999999999999999999999974 23445 779999999999999999999999997
No 219
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.30 E-value=6.8e-06 Score=63.71 Aligned_cols=87 Identities=13% Similarity=0.008 Sum_probs=75.6
Q ss_pred CCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcC---CcHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHHcCCHHHH
Q 024858 7 KDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLD---RSEEAIEAIKSFRGLC-SKQSQESLDNVLIDLYKKCGKVEEQ 82 (261)
Q Consensus 7 ~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g---~~~eAi~~~~~~~~~~-P~~~~~~~~~~L~~ly~~~g~~~eA 82 (261)
.....+...|...+..+|...++.+++|.++.+.+ +.+++|..++.+++.+ |.+ +....+.||..|.+.|+|++|
T Consensus 12 ~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~-~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEE-QRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHH-HHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccc-hHHHHHHHHHHHHHccCHHHH
Confidence 44667888999999999999999999999999988 7779999999999998 742 344556699999999999999
Q ss_pred HHHHHHHHHhhc
Q 024858 83 IEMLKRKLRLIY 94 (261)
Q Consensus 83 ~~~~~~al~l~~ 94 (261)
..+++++|++.|
T Consensus 91 ~~y~~~lL~ieP 102 (152)
T 1pc2_A 91 LKYVRGLLQTEP 102 (152)
T ss_dssp HHHHHHHHHHCT
T ss_pred HHHHHHHHhcCC
Confidence 999999999865
No 220
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.12 E-value=0.00024 Score=65.66 Aligned_cols=153 Identities=14% Similarity=0.073 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHhc--CCchhHHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHhhcchh
Q 024858 29 ALKDMAVVMKQLDRSEEAIEAIKSFRGL--CSKQSQESLDNVLIDLYKKCGK---------VEEQIEMLKRKLRLIYQGE 97 (261)
Q Consensus 29 al~~Lg~~~~~~g~~~eAi~~~~~~~~~--~P~~~~~~~~~~L~~ly~~~g~---------~~eA~~~~~~al~l~~~~~ 97 (261)
.+..+=..+.+.|+.++|.++++++... .|+ ...++.|..+|...|+ .++|.++|++.....
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd---~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G---- 100 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLS---QYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDK---- 100 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCC---HHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTT----
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC---HhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhC----
Confidence 3455556778999999999999998764 455 2345667777766554 688888888876531
Q ss_pred hhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchhhhhHHHHHHHcCCHHHH
Q 024858 98 AFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMI--DPDANKACNLGLCLIKRTRYNEA 175 (261)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~L~~~l~~~g~~~eA 175 (261)
+.| +..+++.|-.+|.+.|++++|..+|++..+. .|+...+..|-..|.+.|+.++|
T Consensus 101 --------------------~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A 159 (501)
T 4g26_A 101 --------------------VVP-NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKA 159 (501)
T ss_dssp --------------------CCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred --------------------CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHH
Confidence 112 2457888999999999999999999998864 57666688888999999999999
Q ss_pred HHHHHHHHhCC-CCCC----------cchhhHHHHHHHHHHHHhc
Q 024858 176 RSVLEDVLYGR-IPGC----------EDGRTRKRAEELLLELESK 209 (261)
Q Consensus 176 ~~~~~~~l~~~-~~~~----------~~~~~~~~a~~~l~~l~~~ 209 (261)
.+++++..... .|+. ...+..++|.+++..+...
T Consensus 160 ~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 160 YEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDL 204 (501)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence 99999998863 1221 1346677888888887643
No 221
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.05 E-value=0.0002 Score=65.94 Aligned_cols=163 Identities=9% Similarity=-0.031 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 024858 9 PEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKR 88 (261)
Q Consensus 9 ~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~ 88 (261)
.+.....|++++...|..+..|...+..+.+.|+.++|...|++++.. |.+.. +....+.. .+.+ +. +++
T Consensus 195 ~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~--l~~~y~~~-~e~~---~~---~~~ 264 (493)
T 2uy1_A 195 ESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMF--LSLYYGLV-MDEE---AV---YGD 264 (493)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSH--HHHHHHHH-TTCT---HH---HHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHH--HHHHHHhh-cchh---HH---HHH
Confidence 345678999999999999999999999999999999999999999999 98432 22212211 1111 11 111
Q ss_pred HHHhh---c--------ch---hhhcCcchHHHhhch------hhhhhhcCC-CcHHHHHHHHHHHHHcC-CHHHHHHHH
Q 024858 89 KLRLI---Y--------QG---EAFNGKPTKTARSHG------KKFQVSVRQ-ETSRLLGNLAWAYMQKT-NFMAAEVVY 146 (261)
Q Consensus 89 al~l~---~--------~~---~~~~~~~~~~~~~~~------~~~~~~l~p-~~~~~~~~Lg~~~~~~g-~~~eA~~~~ 146 (261)
+.... . .. ..+... .+..+.++ ..+.....| ....++...+.+-...+ +++.|...|
T Consensus 265 l~~~~~~~~~~~~~~~~~~~~~~lw~~y-~~~~~r~~~~~~AR~i~~~A~~~~~~~~v~i~~A~lE~~~~~d~~~ar~if 343 (493)
T 2uy1_A 265 LKRKYSMGEAESAEKVFSKELDLLRINH-LNYVLKKRGLELFRKLFIELGNEGVGPHVFIYCAFIEYYATGSRATPYNIF 343 (493)
T ss_dssp HHHHTC----------CHHHHHHHHHHH-HHHHHHHHCHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSHHHHHHH
T ss_pred HHHHHHhhccchhhhhcccccHHHHHHH-HHHHHHcCCHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHCCChHHHHHHH
Confidence 11100 0 00 000000 00000000 011111112 13445555555555445 699999999
Q ss_pred HHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHH
Q 024858 147 QKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDV 182 (261)
Q Consensus 147 ~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~ 182 (261)
+++++..|+++. +...+......|+.+.|..+|+++
T Consensus 344 e~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 344 SSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999888 777788888999999999888886
No 222
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.56 E-value=0.0006 Score=53.28 Aligned_cols=95 Identities=15% Similarity=0.129 Sum_probs=70.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 024858 71 DLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQ 150 (261)
Q Consensus 71 ~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al 150 (261)
.-+...|.|+.|+-....++.+...+..... +. ....++..+|.++..+|+|..|+..|++||
T Consensus 28 k~L~d~~LY~sA~~La~lLlSl~~~~~~~~s-p~----------------~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 28 RDMAAAGLHSNVRLLSSLLLTLSNNNPELFS-PP----------------QKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHSTTSSC-HH----------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHhhcCCccccc-HH----------------HHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 4457889999999999998887321110000 00 013478999999999999999999999997
Q ss_pred hhC------C-------------------Cchh-hhhHHHHHHHcCCHHHHHHHHHHH
Q 024858 151 MID------P-------------------DANK-ACNLGLCLIKRTRYNEARSVLEDV 182 (261)
Q Consensus 151 ~~~------P-------------------~~~~-~~~L~~~l~~~g~~~eA~~~~~~~ 182 (261)
... | ...+ .+.++.||.+.|++++|+.+++.+
T Consensus 91 q~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 91 QQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 642 1 1114 578999999999999999998763
No 223
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.55 E-value=0.00035 Score=52.23 Aligned_cols=79 Identities=13% Similarity=0.123 Sum_probs=64.9
Q ss_pred CcHHHHHHHHHHHHHcCCHHH---HHHHHHHHHhhC-CCch-h-hhhHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchh
Q 024858 121 ETSRLLGNLAWAYMQKTNFMA---AEVVYQKAQMID-PDAN-K-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGR 194 (261)
Q Consensus 121 ~~~~~~~~Lg~~~~~~g~~~e---A~~~~~~al~~~-P~~~-~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~ 194 (261)
...++.+++||++....+..+ ++..++..+..+ |... + .+.||..+.+.|+|++|..+++.+|.. .|.+.+
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~---eP~n~Q 109 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT---EPQNNQ 109 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh---CCCCHH
Confidence 356789999999999998888 999999999987 6444 4 789999999999999999999999998 555543
Q ss_pred hHHHHHHHHHHH
Q 024858 195 TRKRAEELLLEL 206 (261)
Q Consensus 195 ~~~~a~~~l~~l 206 (261)
|..+...+
T Consensus 110 ----A~~Lk~~i 117 (126)
T 1nzn_A 110 ----AKELERLI 117 (126)
T ss_dssp ----HHHHHHHH
T ss_pred ----HHHHHHHH
Confidence 55555444
No 224
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.44 E-value=0.0028 Score=47.23 Aligned_cols=86 Identities=13% Similarity=0.022 Sum_probs=72.0
Q ss_pred CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHH---HHHHHHHHHhcC-CchhHHHHHHHHHHHHHHcCCHHHHH
Q 024858 8 DPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEE---AIEAIKSFRGLC-SKQSQESLDNVLIDLYKKCGKVEEQI 83 (261)
Q Consensus 8 ~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~e---Ai~~~~~~~~~~-P~~~~~~~~~~L~~ly~~~g~~~eA~ 83 (261)
....+...|..++..++...++.+++|..+.......+ +|.+++..++.+ |.. .....+.||..+.+.|+|++|.
T Consensus 16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~-~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEE-QRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHH-HHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcch-HHHHHHHHHHHHHHhhhHHHHH
Confidence 45567788888888888889999999999988887777 999999999887 632 3445566899999999999999
Q ss_pred HHHHHHHHhhc
Q 024858 84 EMLKRKLRLIY 94 (261)
Q Consensus 84 ~~~~~al~l~~ 94 (261)
.+.+..|++.|
T Consensus 95 ~~~~~lL~~eP 105 (126)
T 1nzn_A 95 KYVRGLLQTEP 105 (126)
T ss_dssp HHHHHHHHHCT
T ss_pred HHHHHHHHhCC
Confidence 99999999855
No 225
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.36 E-value=0.0075 Score=46.32 Aligned_cols=115 Identities=10% Similarity=0.043 Sum_probs=78.4
Q ss_pred HHHHHHcCCH------HHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 024858 70 IDLYKKCGKV------EEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAE 143 (261)
Q Consensus 70 ~~ly~~~g~~------~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~ 143 (261)
..+..+.|+. ++-.+.|++++...||.. .. +-+. ...+|...+.. ...++.++|.
T Consensus 20 l~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k-~~---------~wrr--------YI~LWIrYA~~-~ei~D~d~aR 80 (161)
T 4h7y_A 20 LLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDK-YG---------QNES--------FARIQVRFAEL-KAIQEPDDAR 80 (161)
T ss_dssp HHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGG-GT---------TCHH--------HHHHHHHHHHH-HHHHCGGGCH
T ss_pred HHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccc-cc---------cHHH--------HHHHHHHHHHH-HHhcCHHHHH
Confidence 3444556777 777888888888877753 10 0011 12356666644 5668999999
Q ss_pred HHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchhhHHHHHHHHHHHHhc
Q 024858 144 VVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELLLELESK 209 (261)
Q Consensus 144 ~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~a~~~l~~l~~~ 209 (261)
..|+.++.+....+. |...|..-.++|+...|..++.+++.. .+-.. +..+..++.+...
T Consensus 81 ~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~---~~k~~---~~le~a~~nl~~~ 141 (161)
T 4h7y_A 81 DYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVER---GAVPL---EMLEIALRNLNLQ 141 (161)
T ss_dssp HHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCBCH---HHHHHHHHHHHTT
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc---CCCcH---HHHHHHHHhhhcC
Confidence 999999888777766 888899999999999999999999986 32222 2355556665543
No 226
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.31 E-value=0.0033 Score=47.76 Aligned_cols=78 Identities=13% Similarity=0.115 Sum_probs=64.8
Q ss_pred cHHHHHHHHHHHHHcCCHH---HHHHHHHHHHhhCCCch-h-hhhHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchhhH
Q 024858 122 TSRLLGNLAWAYMQKTNFM---AAEVVYQKAQMIDPDAN-K-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTR 196 (261)
Q Consensus 122 ~~~~~~~Lg~~~~~~g~~~---eA~~~~~~al~~~P~~~-~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~ 196 (261)
.+++.+++||++....+.+ +++..++..+..+|+.. + .+.||..+.++|+|++|.++.+.+|.. .|.+.+
T Consensus 38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~---eP~n~Q-- 112 (144)
T 1y8m_A 38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH---ERNNKQ-- 112 (144)
T ss_dssp CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT---CCCCHH--
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc---CCCcHH--
Confidence 5779999999998887665 79999999999999766 4 889999999999999999999999998 555543
Q ss_pred HHHHHHHHHH
Q 024858 197 KRAEELLLEL 206 (261)
Q Consensus 197 ~~a~~~l~~l 206 (261)
|..+...+
T Consensus 113 --A~~Lk~~I 120 (144)
T 1y8m_A 113 --VGALKSMV 120 (144)
T ss_dssp --HHHHHHHH
T ss_pred --HHHHHHHH
Confidence 55554444
No 227
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.30 E-value=0.003 Score=47.44 Aligned_cols=78 Identities=13% Similarity=0.117 Sum_probs=64.1
Q ss_pred cHHHHHHHHHHHHHcCCH---HHHHHHHHHHHhhCCCch-h-hhhHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchhhH
Q 024858 122 TSRLLGNLAWAYMQKTNF---MAAEVVYQKAQMIDPDAN-K-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTR 196 (261)
Q Consensus 122 ~~~~~~~Lg~~~~~~g~~---~eA~~~~~~al~~~P~~~-~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~ 196 (261)
.+.+.+++||++...... .+++..++..+..+|... + ++.||..+.+.|+|++|.++.+.+|.. .|.+.+
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~---eP~N~Q-- 113 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH---ERNNKQ-- 113 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT---CTTCHH--
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh---CCCCHH--
Confidence 467899999999888766 479999999999999665 4 889999999999999999999999997 555543
Q ss_pred HHHHHHHHHH
Q 024858 197 KRAEELLLEL 206 (261)
Q Consensus 197 ~~a~~~l~~l 206 (261)
|..+...+
T Consensus 114 --A~~Lk~~I 121 (134)
T 3o48_A 114 --VGALKSMV 121 (134)
T ss_dssp --HHHHHHHH
T ss_pred --HHHHHHHH
Confidence 55555444
No 228
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=97.21 E-value=0.011 Score=54.32 Aligned_cols=170 Identities=8% Similarity=-0.053 Sum_probs=102.8
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcC--------CchhHHHHHHHHHHHHH
Q 024858 3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLC--------SKQSQESLDNVLIDLYK 74 (261)
Q Consensus 3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~--------P~~~~~~~~~~L~~ly~ 74 (261)
....|+.++|...|++|+.. |.....+...+.. .+.++....+....... +......++...+..+.
T Consensus 223 ~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~----~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~ 297 (493)
T 2uy1_A 223 LIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLV----MDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVL 297 (493)
T ss_dssp HHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHH----TTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhh----cchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHH
Confidence 34678999999999999999 9876554433332 11112211111111101 11111234444566667
Q ss_pred HcCCHHHHHHHHHHHHHhhcchh--hhcCcchHHHhhch-------hhhh--hhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 024858 75 KCGKVEEQIEMLKRKLRLIYQGE--AFNGKPTKTARSHG-------KKFQ--VSVRQETSRLLGNLAWAYMQKTNFMAAE 143 (261)
Q Consensus 75 ~~g~~~eA~~~~~~al~l~~~~~--~~~~~~~~~~~~~~-------~~~~--~~l~p~~~~~~~~Lg~~~~~~g~~~eA~ 143 (261)
+.|..+.|..+|.++ . .|+.. .+.. ........+ ..+. +..-|+.++.+...+......|+.+.|.
T Consensus 298 r~~~~~~AR~i~~~A-~-~~~~~~~v~i~-~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR 374 (493)
T 2uy1_A 298 KKRGLELFRKLFIEL-G-NEGVGPHVFIY-CAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENAR 374 (493)
T ss_dssp HHHCHHHHHHHHHHH-T-TSCCCHHHHHH-HHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HcCCHHHHHHHHHHh-h-CCCCChHHHHH-HHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 778888898888888 3 23211 1100 000000000 1122 2334777888887888888999999999
Q ss_pred HHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHh
Q 024858 144 VVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLY 184 (261)
Q Consensus 144 ~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~ 184 (261)
..|.++ +.+.. |......-...|+.+.+..++++++.
T Consensus 375 ~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 375 ALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999998 44566 77777777888999999999998875
No 229
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.11 E-value=0.0048 Score=48.14 Aligned_cols=116 Identities=10% Similarity=-0.068 Sum_probs=73.0
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHhcC---Cc----hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc--hhhhc
Q 024858 30 LKDMAVVMKQLDRSEEAIEAIKSFRGLC---SK----QSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQ--GEAFN 100 (261)
Q Consensus 30 l~~Lg~~~~~~g~~~eAi~~~~~~~~~~---P~----~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~--~~~~~ 100 (261)
+..-...+...|.|+-|+-+...++.+. |+ .........+|+++..+|+|..|...|+++|.+... ...-.
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~ 102 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV 102 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 3444566778899999998888766543 22 011224466999999999999999999999987420 00000
Q ss_pred CcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 024858 101 GKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQK 148 (261)
Q Consensus 101 ~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~ 148 (261)
........+.... .. .+...++.+.++.||..+|++++|+..++.
T Consensus 103 ~~~~~~~ss~p~s--~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~ 147 (167)
T 3ffl_A 103 RPSTGNSASTPQS--QC-LPSEIEVKYKLAECYTVLKQDKDAIAILDG 147 (167)
T ss_dssp ----------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred cccccccCCCccc--cc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 0000000000000 00 123457889999999999999999998765
No 230
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.08 E-value=0.018 Score=44.20 Aligned_cols=128 Identities=9% Similarity=-0.038 Sum_probs=82.4
Q ss_pred HcCCChHHHHHHHHHHHHHcCCc------HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 024858 21 NAGDRVDSALKDMAVVMKQLDRS------EEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIY 94 (261)
Q Consensus 21 ~~~p~~~~al~~Lg~~~~~~g~~------~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~ 94 (261)
-..|++++.|......+-..|+. ++-++.|++++..-|..-...+. --+|.-. +|. .| .++..
T Consensus 7 ~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wr---rYI~LWI-rYA----~~---~ei~D 75 (161)
T 4h7y_A 7 MMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNE---SFARIQV-RFA----EL---KAIQE 75 (161)
T ss_dssp ---CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCH---HHHHHHH-HHH----HH---HHHHC
T ss_pred eeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHH---HHHHHHH-HHH----HH---HHhcC
Confidence 35799999999988888888999 88889999999887763111111 1122322 111 11 11111
Q ss_pred chhhhcCcchHHHhhchhhhh--hhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchhhhhHHHHHHHcCC
Q 024858 95 QGEAFNGKPTKTARSHGKKFQ--VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKACNLGLCLIKRTR 171 (261)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~--~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~L~~~l~~~g~ 171 (261)
.+.+ ...++ +.+-..++.+|...|..-.++|+...|.+.+.+|+.+.|........+..-++.|+
T Consensus 76 ~d~a------------R~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~nl~~~~ 142 (161)
T 4h7y_A 76 PDDA------------RDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALRNLNLQK 142 (161)
T ss_dssp GGGC------------HHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHHHHHTTC
T ss_pred HHHH------------HHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHHhhhcCC
Confidence 1111 11111 12244577899999999999999999999999999999988776655555555553
No 231
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=96.86 E-value=0.016 Score=51.43 Aligned_cols=105 Identities=13% Similarity=0.058 Sum_probs=77.3
Q ss_pred HcCCHHHHHHHHHHHHHhhcchhhhcCcch-HHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 024858 75 KCGKVEEQIEMLKRKLRLIYQGEAFNGKPT-KTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMID 153 (261)
Q Consensus 75 ~~g~~~eA~~~~~~al~l~~~~~~~~~~~~-~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~ 153 (261)
..|+.++|++.+++++.+. .|..+.+... .-.......+. -....++..++.++...|++.+|+..+++++..+
T Consensus 127 ~~~~~~~a~~~l~~Al~L~-rG~~L~~~~~~~w~~~~r~~l~----~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~ 201 (388)
T 2ff4_A 127 AAGRFEQASRHLSAALREW-RGPVLDDLRDFQFVEPFATALV----EDKVLAHTAKAEAEIACGRASAVIAELEALTFEH 201 (388)
T ss_dssp HTTCHHHHHHHHHHHHTTC-CSSTTGGGTTSTTHHHHHHHHH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hCCCHHHHHHHHHHHHHhc-CCCCCCCCCchhHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 4689999999999999983 4443332110 00000000000 0112466778899999999999999999999999
Q ss_pred CCchh-hhhHHHHHHHcCCHHHHHHHHHHHHh
Q 024858 154 PDANK-ACNLGLCLIKRTRYNEARSVLEDVLY 184 (261)
Q Consensus 154 P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~ 184 (261)
|-+.. +..|-.+|...|+..+|+++|+++..
T Consensus 202 P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 202 PYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99998 88999999999999999999998765
No 232
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.81 E-value=0.013 Score=56.61 Aligned_cols=134 Identities=15% Similarity=0.164 Sum_probs=85.3
Q ss_pred HcCC-cHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhhcch-hhhcCcchHHHhhchhhhh
Q 024858 39 QLDR-SEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKC-GKVEEQIEMLKRKLRLIYQG-EAFNGKPTKTARSHGKKFQ 115 (261)
Q Consensus 39 ~~g~-~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~-g~~~eA~~~~~~al~l~~~~-~~~~~~~~~~~~~~~~~~~ 115 (261)
..++ ++-|+..+++....+|.... .+...+..+.... .+--+|+..+.+.++-.... ......... .
T Consensus 260 ~t~~~~~~a~~~le~L~~~~p~~~~-~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~-------~-- 329 (754)
T 4gns_B 260 ITPSLVDFTIDYLKGLTKKDPIHDI-YYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDAD-------S-- 329 (754)
T ss_dssp TCGGGHHHHHHHHHHHHHHCGGGHH-HHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHH-------H--
T ss_pred ccccHHHHHHHHHHHHHhhCCchhH-HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccc-------c--
Confidence 3455 57799999999999997321 1111122222222 34567888888887532100 000000000 0
Q ss_pred hhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHH
Q 024858 116 VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDV 182 (261)
Q Consensus 116 ~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~ 182 (261)
..+.|-....+.-=+..+..+|+++-|+.+-++|+.+-|+... |..|+.||+.+|+|+.|+-.+.-.
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 0000111234444577788899999999999999999999998 999999999999999999776543
No 233
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.58 E-value=0.072 Score=50.76 Aligned_cols=112 Identities=19% Similarity=0.030 Sum_probs=69.5
Q ss_pred HHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhh
Q 024858 38 KQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVS 117 (261)
Q Consensus 38 ~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (261)
.+.|++++|.+..+ .++ + ...+..||..+.+.|+++.|+.+|.++-... ....+.
T Consensus 663 l~~~~~~~A~~~~~---~~~-~---~~~W~~la~~al~~~~~~~A~~~y~~~~d~~------------------~l~~l~ 717 (814)
T 3mkq_A 663 LKVGQLTLARDLLT---DES-A---EMKWRALGDASLQRFNFKLAIEAFTNAHDLE------------------SLFLLH 717 (814)
T ss_dssp HHHTCHHHHHHHHT---TCC-C---HHHHHHHHHHHHHTTCHHHHHHHHHHHTCHH------------------HHHHHH
T ss_pred hhcCCHHHHHHHHH---hhC-c---HhHHHHHHHHHHHcCCHHHHHHHHHHccChh------------------hhHHHH
Confidence 45566666665542 222 1 2245569999999999999999999853321 000011
Q ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchhhhhHHHHHHHcCCHHHHHHHHHH
Q 024858 118 VRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKACNLGLCLIKRTRYNEARSVLED 181 (261)
Q Consensus 118 l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~L~~~l~~~g~~~eA~~~~~~ 181 (261)
...++.+.+..++......|+++.|..+|.+. .+ ......+|.+.+++++|+.+.++
T Consensus 718 ~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~-----g~--~~~a~~~~~~~~~~~~A~~lA~~ 774 (814)
T 3mkq_A 718 SSFNNKEGLVTLAKDAETTGKFNLAFNAYWIA-----GD--IQGAKDLLIKSQRFSEAAFLGST 774 (814)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-----TC--HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHcCchHHHHHHHHHc-----CC--HHHHHHHHHHcCChHHHHHHHHH
Confidence 11345566777888888888888888776652 11 22334557777777777776654
No 234
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=96.19 E-value=0.048 Score=48.40 Aligned_cols=85 Identities=16% Similarity=0.074 Sum_probs=67.7
Q ss_pred cCCHHHHHHHHHHHHHc--CC------C--------------hHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHH
Q 024858 6 QKDPEAAIVLFWKAINA--GD------R--------------VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQE 63 (261)
Q Consensus 6 ~~~~~~A~~~~~~al~~--~p------~--------------~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~ 63 (261)
.|+.+.|...+++|+.+ +| . ...++..++..+...|++.+|+..++.++..+|- ++
T Consensus 128 ~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~--~E 205 (388)
T 2ff4_A 128 AGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPY--RE 205 (388)
T ss_dssp TTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--CH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CH
Confidence 57888899999999863 21 1 1223344777788999999999999999999997 35
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 024858 64 SLDNVLIDLYKKCGKVEEQIEMLKRKLRL 92 (261)
Q Consensus 64 ~~~~~L~~ly~~~g~~~eA~~~~~~al~l 92 (261)
.++..|..+|...|+..+|+..|++.-+.
T Consensus 206 ~~~~~lm~al~~~Gr~~~Al~~y~~~r~~ 234 (388)
T 2ff4_A 206 PLWTQLITAYYLSDRQSDALGAYRRVKTT 234 (388)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 56666888899999999999999997664
No 235
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=95.97 E-value=0.07 Score=53.03 Aligned_cols=99 Identities=9% Similarity=0.018 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 024858 65 LDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEV 144 (261)
Q Consensus 65 ~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~ 144 (261)
.++.|.+.|.+.|+.++|..+++..-++...| +.| +.-+++.|-..|.+.|+.++|..
T Consensus 129 TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG---------------------~~P-dvvTYNtLI~Glck~G~~~eA~~ 186 (1134)
T 3spa_A 129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKR---------------------KLL-TLDMYNAVMLGWARQGAFKELVY 186 (1134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHH---------------------TTC-CHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcC---------------------CCC-CHhHHHHHHHHHHhCCCHHHHHH
Confidence 36778999999999999999998765431100 001 23578889999999999999999
Q ss_pred HHHHHHh--hCCCchhhhhHHHHHHHcCC-HHHHHHHHHHHHhC
Q 024858 145 VYQKAQM--IDPDANKACNLGLCLIKRTR-YNEARSVLEDVLYG 185 (261)
Q Consensus 145 ~~~~al~--~~P~~~~~~~L~~~l~~~g~-~~eA~~~~~~~l~~ 185 (261)
.|++..+ +.||...+..|-.++.+.|+ .++|.+++++....
T Consensus 187 Lf~eM~~~G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 187 VLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQE 230 (1134)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Confidence 9999986 45877777778889999998 57889999998885
No 236
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=95.97 E-value=0.063 Score=49.34 Aligned_cols=62 Identities=13% Similarity=0.011 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 124 RLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 124 ~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
..+.+||.+..-...++.|..+|.+|+.+.|++.. ++.||.+....|+.-+|.-+|-+++..
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~ 215 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV 215 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhc
Confidence 46678999999999999999999999999999999 999999999999999999999999997
No 237
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.56 E-value=0.25 Score=47.63 Aligned_cols=115 Identities=13% Similarity=0.101 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHH--HHcCCcHHHHHHHHHHHh--------cCCchh--------HHHHHHHHH
Q 024858 9 PEAAIVLFWKAINAGDRVDSALKDMAVVM--KQLDRSEEAIEAIKSFRG--------LCSKQS--------QESLDNVLI 70 (261)
Q Consensus 9 ~~~A~~~~~~al~~~p~~~~al~~Lg~~~--~~~g~~~eAi~~~~~~~~--------~~P~~~--------~~~~~~~L~ 70 (261)
.+.|+.++++....+|.+...+....... ....+--+|+.++.+.++ +.+.+. ...+...-+
T Consensus 265 ~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Qa 344 (754)
T 4gns_B 265 VDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQT 344 (754)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHHH
Confidence 57799999998888887654332221111 122345567777766653 122211 112444557
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 024858 71 DLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKA 149 (261)
Q Consensus 71 ~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~a 149 (261)
..+...|+++-|+++-++++...| ..-..|..|+.+|..+|+|+.|+-.+.-.
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aP--------------------------seF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELAL--------------------------DSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCS--------------------------SCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHHHhcCc--------------------------hhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 778899999999999999998754 34569999999999999999999876654
No 238
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.48 E-value=0.34 Score=45.98 Aligned_cols=44 Identities=16% Similarity=-0.006 Sum_probs=33.8
Q ss_pred hcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHH
Q 024858 5 VQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSF 53 (261)
Q Consensus 5 ~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~ 53 (261)
.-|+++.|.+..+ ..+.+..|..||..+.+.|+++.|+.+|.++
T Consensus 664 ~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 664 KVGQLTLARDLLT-----DESAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3456666555543 3356788999999999999999999999875
No 239
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.47 E-value=0.49 Score=37.14 Aligned_cols=54 Identities=13% Similarity=0.073 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 024858 27 DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKL 90 (261)
Q Consensus 27 ~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al 90 (261)
++.-+.++. +.|+++.|.+..+.. +- ...+..||+....+|+++-|+.+|+++-
T Consensus 8 ~~~rF~LAL---~lg~l~~A~e~a~~l---~~----~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 8 PHIRFDLAL---EYGNLDAALDEAKKL---ND----SITWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp HHHHHHHHH---HTTCHHHHHHHHHHH---CC----HHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred hHHHHHHHH---hcCCHHHHHHHHHHh---CC----HHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 344444444 678888888886654 21 2234558888888899999888888853
No 240
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=95.37 E-value=0.18 Score=42.29 Aligned_cols=56 Identities=20% Similarity=0.112 Sum_probs=35.6
Q ss_pred hhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCc
Q 024858 4 LVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK 59 (261)
Q Consensus 4 ~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~ 59 (261)
+..|++++|+......|+.+|.+.+.-..|-.+++-.|+++.|.+.++.+.+++|+
T Consensus 8 l~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~ 63 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 63 (273)
T ss_dssp TTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG
T ss_pred HhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence 45566666666666666666666666666666666666666666666666666665
No 241
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=95.34 E-value=0.063 Score=40.19 Aligned_cols=86 Identities=6% Similarity=-0.131 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCc---HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHH
Q 024858 9 PEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRS---EEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEM 85 (261)
Q Consensus 9 ~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~---~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~ 85 (261)
+.....-|..-. .+.-.+.+.+++|..+...... .++|.+++..++..|.. .......|+..+.+.|+|++|..+
T Consensus 23 L~~l~~qy~~E~-~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~-~Rd~LYyLAvg~yklgdY~~Ar~y 100 (134)
T 3o48_A 23 LEILRQQVVSEG-GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR-RRECLYYLTIGCYKLGEYSMAKRY 100 (134)
T ss_dssp HHHHHHHHHHTT-GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGG-HHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHh-CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcch-hHHHHHHHHHHHHHhhhHHHHHHH
Confidence 334444444433 2333467888888888776544 47889999999888853 233445588889999999999999
Q ss_pred HHHHHHhhcch
Q 024858 86 LKRKLRLIYQG 96 (261)
Q Consensus 86 ~~~al~l~~~~ 96 (261)
.+.+|++.|.+
T Consensus 101 ~d~lL~~eP~N 111 (134)
T 3o48_A 101 VDTLFEHERNN 111 (134)
T ss_dssp HHHHHTTCTTC
T ss_pred HHHHHhhCCCC
Confidence 99999986643
No 242
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=95.29 E-value=1.5 Score=38.97 Aligned_cols=98 Identities=16% Similarity=0.129 Sum_probs=73.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 024858 68 VLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQ 147 (261)
Q Consensus 68 ~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~ 147 (261)
-|+.+|...|+|.+|...+.+.++-... ...+.. .-+++..-..+|..+|++.++...|.
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~-------------~dd~~~-------llev~lle~~~~~~~~n~~k~k~~l~ 163 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKK-------------LDDKNL-------LVEVQLLESKTYHALSNLPKARAALT 163 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTT-------------SSCTHH-------HHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhc-------------cccchh-------HHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 5889999999999999999998774210 000111 13577888999999999999999999
Q ss_pred HHHhhC---CCch----h-hhhHHHHHH-HcCCHHHHHHHHHHHHhC
Q 024858 148 KAQMID---PDAN----K-ACNLGLCLI-KRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 148 ~al~~~---P~~~----~-~~~L~~~l~-~~g~~~eA~~~~~~~l~~ 185 (261)
+|.... +.++ . ...-|..++ ..++|.+|...|-++...
T Consensus 164 ~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~ 210 (394)
T 3txn_A 164 SARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEG 210 (394)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence 998654 1222 1 234588889 899999999999988753
No 243
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=95.16 E-value=0.25 Score=49.11 Aligned_cols=102 Identities=10% Similarity=-0.068 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHh-----cCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCc
Q 024858 28 SALKDMAVVMKQLDRSEEAIEAIKSFRG-----LCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGK 102 (261)
Q Consensus 28 ~al~~Lg~~~~~~g~~~eAi~~~~~~~~-----~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~ 102 (261)
.++..|-..|.+.|+.++|.+++..+.. ..|+ ...+|+|.+.|.+.|++++|.++|++..+.-
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~Pd---vvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G--------- 195 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLT---LDMYNAVMLGWARQGAFKELVYVLFMVKDAG--------- 195 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---------
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCC---HhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC---------
Confidence 3466788889999999999999977542 4566 3457889999999999999999999986641
Q ss_pred chHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhh--CCCch
Q 024858 103 PTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNF-MAAEVVYQKAQMI--DPDAN 157 (261)
Q Consensus 103 ~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~-~eA~~~~~~al~~--~P~~~ 157 (261)
+.| +.-+++.|-.++.+.|+. ++|..++++.... .||..
T Consensus 196 ---------------~~P-DvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~v 237 (1134)
T 3spa_A 196 ---------------LTP-DLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQAL 237 (1134)
T ss_dssp ---------------CCC-CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHH
T ss_pred ---------------CCC-cHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChh
Confidence 112 234666677788888874 7888999998874 35544
No 244
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=94.97 E-value=0.12 Score=39.09 Aligned_cols=86 Identities=6% Similarity=-0.131 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCc---HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHH
Q 024858 9 PEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRS---EEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEM 85 (261)
Q Consensus 9 ~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~---~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~ 85 (261)
+.....-|..-.. ++-.+++.++.|..+...... .++|.+++..++..|.. .......|+..+.+.|+|++|..+
T Consensus 22 L~~lr~qY~~E~~-~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~-~RdcLYyLAvg~ykl~~Y~~Ar~y 99 (144)
T 1y8m_A 22 LEILRQQVVSEGG-PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR-RRECLYYLTIGCYKLGEYSMAKRY 99 (144)
T ss_dssp HHHHHHHHHHTTS-TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCST-HHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHhcc-CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccc-hhHHHHHHHHHHHHhhhHHHHHHH
Confidence 3344444444322 355678889999888877654 47889999999988854 233455588889999999999999
Q ss_pred HHHHHHhhcch
Q 024858 86 LKRKLRLIYQG 96 (261)
Q Consensus 86 ~~~al~l~~~~ 96 (261)
.+..|++.|.+
T Consensus 100 ~d~lL~~eP~n 110 (144)
T 1y8m_A 100 VDTLFEHERNN 110 (144)
T ss_dssp HHHHHHTCCCC
T ss_pred HHHHHhcCCCc
Confidence 99999986643
No 245
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.89 E-value=0.35 Score=43.59 Aligned_cols=101 Identities=17% Similarity=0.178 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 024858 65 LDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEV 144 (261)
Q Consensus 65 ~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~ 144 (261)
+...|+.+|...|++.+|...+.....-.. ....+.. -.+++.-...+|...+++..|..
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~-------------~~~~~~~-------kve~~l~q~rl~l~~~d~~~a~~ 198 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVETY-------------GSMEMSE-------KIQFILEQMELSILKGDYSQATV 198 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-------------SSSCHHH-------HHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHH-------------hcccHHH-------HHHHHHHHHHHHHHCCCHHHHHH
Confidence 346689999999999999999999754211 0000110 12466777889999999999999
Q ss_pred HHHHHHh---hCCCchh-----hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 145 VYQKAQM---IDPDANK-----ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 145 ~~~~al~---~~P~~~~-----~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
.++++.. -.+.++. ....|..+...++|.+|...|..+...
T Consensus 199 ~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 199 LSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 9999742 2333332 245689999999999999999999874
No 246
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=94.84 E-value=0.51 Score=37.05 Aligned_cols=118 Identities=13% Similarity=-0.057 Sum_probs=79.9
Q ss_pred CChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcc
Q 024858 24 DRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKP 103 (261)
Q Consensus 24 p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~ 103 (261)
|..++.-..+++++.-.|.+..+.-++. .++ ..++... -.-+|.+.+++..|+..+++.++-.-...
T Consensus 30 ~~~~eY~lL~~I~LyyngEY~R~Lf~L~---~lN---T~Ts~YY-k~LCy~klKdYkkA~~~le~il~~kvd~d------ 96 (242)
T 3kae_A 30 PCKPEYRMLMSIVLYLNGEYTRALFHLH---KLN---TCTSKYY-ESLCYKKKKDYKKAIKSLESILEGKVERD------ 96 (242)
T ss_dssp ----CTHHHHHHHHHHTTCHHHHHHHHH---TCC---BHHHHHH-HHHHHHHTTCHHHHHHHHHHHHTTCSBCC------
T ss_pred cCChHHHhhhhhhhhhcchHhHHHHHHH---hcc---hHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcccccC------
Confidence 4445566678999999999998887652 222 1233333 45688999999999999999985310000
Q ss_pred hHHHhhchhhhh-hhcCCCcHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhhCCCchh
Q 024858 104 TKTARSHGKKFQ-VSVRQETSRLLG-NLAWAYMQKTNFMAAEVVYQKAQMIDPDANK 158 (261)
Q Consensus 104 ~~~~~~~~~~~~-~~l~p~~~~~~~-~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~ 158 (261)
......++ .-++|.+.+... -+|.++.+.|+-+||+.+|......+|=.+.
T Consensus 97 ----~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~ 149 (242)
T 3kae_A 97 ----PDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSP 149 (242)
T ss_dssp ----CCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHH
T ss_pred ----cccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccch
Confidence 00011122 345677777555 4799999999999999999999999887665
No 247
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=94.74 E-value=0.44 Score=39.99 Aligned_cols=58 Identities=21% Similarity=0.209 Sum_probs=44.1
Q ss_pred HHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 024858 36 VMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQ 95 (261)
Q Consensus 36 ~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~ 95 (261)
.+.+.|..++|++.+...++.+|.++ .+...|..+|.-.|+++.|..-++.+.++.|.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da--~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~ 63 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDA--SLRSSFIELLCIDGDFERADEQLMQSIKLFPE 63 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCH--HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence 34567888888888888888888854 34555778888888888888888888777653
No 248
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=94.11 E-value=1.2 Score=39.43 Aligned_cols=102 Identities=10% Similarity=-0.031 Sum_probs=74.2
Q ss_pred HHHHHHHHcCCcHHHHHHHHHHHhcCC----chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHH
Q 024858 32 DMAVVMKQLDRSEEAIEAIKSFRGLCS----KQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTA 107 (261)
Q Consensus 32 ~Lg~~~~~~g~~~eAi~~~~~~~~~~P----~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~ 107 (261)
.||.+|.+.|++.+|.+.+.+.++-.. ...-..+...-..+|...|++.++..+|.++...... .+
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~a--i~-------- 173 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANA--IY-------- 173 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--SC--------
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhcc--CC--------
Confidence 589999999999999998887765322 2123345566778999999999999999999876310 00
Q ss_pred hhchhhhhhhcCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhh
Q 024858 108 RSHGKKFQVSVRQETSRLLGNLAWAYM-QKTNFMAAEVVYQKAQMI 152 (261)
Q Consensus 108 ~~~~~~~~~~l~p~~~~~~~~Lg~~~~-~~g~~~eA~~~~~~al~~ 152 (261)
.++ .. .+.+...-|..++ ..++|.+|...|-+++.-
T Consensus 174 -~~p-~i-------~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~ 210 (394)
T 3txn_A 174 -CPP-KV-------QGALDLQSGILHAADERDFKTAFSYFYEAFEG 210 (394)
T ss_dssp -CCH-HH-------HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred -CCH-HH-------HHHHHHHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence 000 00 1234556788889 899999999999999853
No 249
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=93.96 E-value=0.35 Score=44.31 Aligned_cols=76 Identities=14% Similarity=0.117 Sum_probs=65.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 024858 67 NVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVY 146 (261)
Q Consensus 67 ~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~ 146 (261)
..||++.+-.+.++.|...|.+|+.+.| ++...++.||.+...+|+.-+|+-+|
T Consensus 156 ~~LGDL~RY~~~~~~A~~~Y~~A~~~~P--------------------------~~G~~~nqLavla~~~~~~l~a~y~y 209 (497)
T 1ya0_A 156 VHLGDIARYRNQTSQAESYYRHAAQLVP--------------------------SNGQPYNQLAILASSKGDHLTTIFYY 209 (497)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT--------------------------TBSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHHHHHHHHhCC--------------------------CCCchHHHHHHHHhcccccHHHHHHH
Confidence 4589999999999999999999999854 45568899999999999999999999
Q ss_pred HHHHhhCCCchh-hhhHHHHHHH
Q 024858 147 QKAQMIDPDANK-ACNLGLCLIK 168 (261)
Q Consensus 147 ~~al~~~P~~~~-~~~L~~~l~~ 168 (261)
.+++......+. ..||...+.+
T Consensus 210 ~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 210 CRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHhcCCCChhHHHHHHHHHHH
Confidence 999988776776 7788887765
No 250
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=93.93 E-value=1.8 Score=33.91 Aligned_cols=99 Identities=13% Similarity=0.059 Sum_probs=67.0
Q ss_pred hhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHH
Q 024858 4 LVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQI 83 (261)
Q Consensus 4 ~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~ 83 (261)
+.-|+++.|....+.. +...-|..||..-..+|+++-|+.+|.++-.. .. |.-+|.-.|+.+.-.
T Consensus 16 L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~---------~~-L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHSF---------DK-LSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCH---------HH-HHHHHHHHTCHHHHH
T ss_pred HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCH---------HH-HHHHHHHhCCHHHHH
Confidence 4568899888887644 55778999999999999999999999775322 11 333566778876554
Q ss_pred HHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 024858 84 EMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQK 148 (261)
Q Consensus 84 ~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~ 148 (261)
..-+.+... + -++--..++..+|++++++..|.+
T Consensus 81 kla~iA~~~------------------g-------------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 81 KMQNIAQTR------------------E-------------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHT------------------T-------------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHC------------------c-------------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 433333221 0 012234567789999999887755
No 251
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.85 E-value=0.16 Score=45.60 Aligned_cols=109 Identities=11% Similarity=-0.010 Sum_probs=80.1
Q ss_pred hHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcch
Q 024858 26 VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK-QSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPT 104 (261)
Q Consensus 26 ~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~-~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~ 104 (261)
...++..+|..+.+.|++++|.++|.++...... ............++...|++..+...+.++-.+...+. .
T Consensus 130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~----d-- 203 (429)
T 4b4t_R 130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGG----D-- 203 (429)
T ss_dssp CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCC----C--
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCC----C--
Confidence 4557788999999999999999999998875543 11334555577888999999999999999877642110 0
Q ss_pred HHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 024858 105 KTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDP 154 (261)
Q Consensus 105 ~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P 154 (261)
.. . .......-|.++...++|.+|...|..++.-..
T Consensus 204 ------~~-~-------~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 204 ------WE-R-------RNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp ------TH-H-------HHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred ------HH-H-------HHHHHHHHHHHHHHhChHHHHHHHHHHHhccCC
Confidence 00 0 012345568888999999999999999887543
No 252
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.01 E-value=0.53 Score=42.14 Aligned_cols=97 Identities=13% Similarity=0.114 Sum_probs=74.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 024858 66 DNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVV 145 (261)
Q Consensus 66 ~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~ 145 (261)
..-||..|.+.|++++|.++|.++...... .+ .--+++.++-.++...+++..+...
T Consensus 134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~--------------~~---------~kid~~l~~irl~l~~~d~~~~~~~ 190 (429)
T 4b4t_R 134 WINLGEYYAQIGDKDNAEKTLGKSLSKAIS--------------TG---------AKIDVMLTIARLGFFYNDQLYVKEK 190 (429)
T ss_dssp CHHHHHHHHHHCCCTTHHHHHHHHHHHHTC--------------CC---------SHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCC--------------hH---------HHHHHHHHHHHHHHHhccHHHHHHH
Confidence 355899999999999999999997764210 01 1235788888899999999999999
Q ss_pred HHHHHhhCCC--chh-----hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 146 YQKAQMIDPD--ANK-----ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 146 ~~~al~~~P~--~~~-----~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
+.++-..... ++. ...-|..+...++|.+|...|-.++..
T Consensus 191 ~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 191 LEAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHHHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 9999765322 221 234578888899999999999988774
No 253
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.32 E-value=0.33 Score=44.57 Aligned_cols=132 Identities=14% Similarity=0.088 Sum_probs=60.9
Q ss_pred hhcCCHHHHHHHHHHHH-----------HcCCChHHHHHHHHHHHHHcCCcHHHH--------------HHHHHH-HhcC
Q 024858 4 LVQKDPEAAIVLFWKAI-----------NAGDRVDSALKDMAVVMKQLDRSEEAI--------------EAIKSF-RGLC 57 (261)
Q Consensus 4 ~~~~~~~~A~~~~~~al-----------~~~p~~~~al~~Lg~~~~~~g~~~eAi--------------~~~~~~-~~~~ 57 (261)
+-.+++++|..+-...+ .+|+-.+..|+..+.++-..|+..+.. ..++.+ ++.+
T Consensus 147 ~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D 226 (523)
T 4b4t_S 147 WDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHD 226 (523)
T ss_dssp --------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSCSS
T ss_pred hccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccC
Confidence 34566777766665443 124445677887888888888776632 122221 2233
Q ss_pred CchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcC
Q 024858 58 SKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKT 137 (261)
Q Consensus 58 P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g 137 (261)
+. ....+.|.+...|...+.++.|..+..++. .|...+-+ +.....++.+|.++.-++
T Consensus 227 ~~-~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn-------------------~q~~rY~YY~GRI~a~q~ 284 (523)
T 4b4t_S 227 NE-TKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSS-------------------SLEARYFFYLSKINAIQL 284 (523)
T ss_dssp SC-HHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCH-------------------HHHHHHHHHHHHHHHHTT
T ss_pred cc-hhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCH-------------------HHHHHHHHHHHHHHHHhc
Confidence 33 356788889999999999999999998863 23111100 011346788999999999
Q ss_pred CHHHHHHHHHHHHhhCCCch
Q 024858 138 NFMAAEVVYQKAQMIDPDAN 157 (261)
Q Consensus 138 ~~~eA~~~~~~al~~~P~~~ 157 (261)
+|.+|..++..|+..-|.+.
T Consensus 285 ~Y~eA~~~L~~A~rkap~~~ 304 (523)
T 4b4t_S 285 DYSTANEYIIAAIRKAPHNS 304 (523)
T ss_dssp CHHHHHHHHHHHTSSCSCSS
T ss_pred cHHHHHHHHHHHHHhCCcch
Confidence 99999999999999877553
No 254
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.41 E-value=6 Score=35.41 Aligned_cols=105 Identities=10% Similarity=0.117 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHh----cCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcch
Q 024858 29 ALKDMAVVMKQLDRSEEAIEAIKSFRG----LCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPT 104 (261)
Q Consensus 29 al~~Lg~~~~~~g~~~eAi~~~~~~~~----~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~ 104 (261)
.-..|+.++...|++.+|...+..... ..+..--.........+|...+++..|...++++........
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~------- 211 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNP------- 211 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSS-------
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccC-------
Confidence 345689999999999999998887542 222211234456677899999999999999999754211000
Q ss_pred HHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 024858 105 KTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMI 152 (261)
Q Consensus 105 ~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~ 152 (261)
..... -...+...|.++...++|.+|..+|..++..
T Consensus 212 -----~~~~l-------k~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 212 -----KYESL-------KLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp -----CCHHH-------HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred -----CcHHH-------HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 00000 0235567899999999999999999999864
No 255
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=90.22 E-value=6.9 Score=32.25 Aligned_cols=150 Identities=19% Similarity=0.174 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc---chh--hhcCcc
Q 024858 29 ALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIY---QGE--AFNGKP 103 (261)
Q Consensus 29 al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~---~~~--~~~~~~ 103 (261)
-+..++.+.-|.+||++.++..+++...++.-..+ =.|+|...|. ..+...|.++++.. +.. ..+-..
T Consensus 6 ~lv~~AklaeqaeRyddM~~~Mk~v~~~~~eLt~E-ERnLLSvAYK------Nvig~rR~swRiissieqke~~~~~~~~ 78 (248)
T 3uzd_A 6 QLVQKARLAEQAERYDDMAAAMKNVTELNEPLSNE-ERNLLSVAYK------NVVGARRSSWRVISSIEQKTSADGNEKK 78 (248)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHH-HHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHC---CCC-
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcCCHH-HHHHHHHHHH------hhcccchHHHHHHHHHHHHhhccCCHHH
Confidence 45668889999999999999999999988752222 2444554443 22333333333210 000 000000
Q ss_pred ------------hHHHhhchhhhh---hhcCCC--c----HHH--HHHHHHHHHHc----------CCHHHHHHHHHHHH
Q 024858 104 ------------TKTARSHGKKFQ---VSVRQE--T----SRL--LGNLAWAYMQK----------TNFMAAEVVYQKAQ 150 (261)
Q Consensus 104 ------------~~~~~~~~~~~~---~~l~p~--~----~~~--~~~Lg~~~~~~----------g~~~eA~~~~~~al 150 (261)
..+...+...+. -.+-|. + ..+ +-..|..|.-. .-.+.|...|++|.
T Consensus 79 ~~~i~~yr~kie~EL~~iC~dil~lld~~Lip~a~~~~~eskVFY~KmKGDyyRYlAE~~~g~~r~~~~~~a~~aY~~A~ 158 (248)
T 3uzd_A 79 IEMVRAYREKIEKELEAVCQDVLSLLDNYLIKNCSETQYESKVFYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAH 158 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCCTTCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCcCCCcchhHHHHHHHhhhhHHHHHHHhcCchHHHHHHHHHHHHHHHHH
Confidence 000000011111 011111 1 112 22345555322 22367888999887
Q ss_pred h-----hCCCchh----hhhHHHHHHH-cCCHHHHHHHHHHHHhC
Q 024858 151 M-----IDPDANK----ACNLGLCLIK-RTRYNEARSVLEDVLYG 185 (261)
Q Consensus 151 ~-----~~P~~~~----~~~L~~~l~~-~g~~~eA~~~~~~~l~~ 185 (261)
. +.|.+|- ..|.+.+|.+ +++.++|..+.++++..
T Consensus 159 ~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd~ 203 (248)
T 3uzd_A 159 EISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDD 203 (248)
T ss_dssp HHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5 6788884 3466666655 69999999988887764
No 256
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=90.12 E-value=5.7 Score=31.17 Aligned_cols=71 Identities=18% Similarity=0.164 Sum_probs=56.4
Q ss_pred CCChHHHHHHHHHHHHHcCCcHHHHHHHHHHH--hc--C-------------CchhHHHHHHHHHHHHHHcCCHHHHHHH
Q 024858 23 GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFR--GL--C-------------SKQSQESLDNVLIDLYKKCGKVEEQIEM 85 (261)
Q Consensus 23 ~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~--~~--~-------------P~~~~~~~~~~L~~ly~~~g~~~eA~~~ 85 (261)
.-+...+...-+.++...+++..|+..++..+ +. + |.+ .+...+.+|.++.+.|..+|||..
T Consensus 58 ~lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~D-kEfFy~l~a~lltq~g~r~EaI~y 136 (242)
T 3kae_A 58 KLNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGD-EEFFESLLGDLCTLSGYREEGIGH 136 (242)
T ss_dssp TCCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTC-HHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccch-HHHHHHHHHHHHHHhcCHHHhhhH
Confidence 34556677778899999999999999999988 22 2 322 344567899999999999999999
Q ss_pred HHHHHHhhc
Q 024858 86 LKRKLRLIY 94 (261)
Q Consensus 86 ~~~al~l~~ 94 (261)
|.......+
T Consensus 137 ~~~Sf~~~~ 145 (242)
T 3kae_A 137 YVRSFGKSF 145 (242)
T ss_dssp HHHHHHHCC
T ss_pred hhhhcCCcc
Confidence 999888753
No 257
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=88.00 E-value=2.5 Score=42.61 Aligned_cols=139 Identities=9% Similarity=0.041 Sum_probs=87.9
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchh
Q 024858 33 MAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGK 112 (261)
Q Consensus 33 Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~ 112 (261)
+...+...|+++-+.+ .....|.++.. ..++|.+|...|++++|.++|+++-.-.............. ..
T Consensus 818 l~~~l~~~~~~~~~~~----l~~~~~~~~~~--~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~----~~ 887 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQ----LIGWLNSDPIA--VYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREF----QE 887 (1139)
T ss_dssp HHHHHHHHSCTTHHHH----HHHHSCCCHHH--HHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHH----HH
T ss_pred HHHHHHHhhhHHHHHH----HhhhccCCcHH--HHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccc----cc
Confidence 4455666677765544 34455654322 36799999999999999999998633211111000000000 00
Q ss_pred hhh-hhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-Cch----h-hhhHHHHHHHcCCHHHHHHHHHH
Q 024858 113 KFQ-VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDP-DAN----K-ACNLGLCLIKRTRYNEARSVLED 181 (261)
Q Consensus 113 ~~~-~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P-~~~----~-~~~L~~~l~~~g~~~eA~~~~~~ 181 (261)
... .......+..+..+..++.+.|.++.+++.-+.|++..+ ++. . |.++=......|+|++|...+-.
T Consensus 888 ~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~ 963 (1139)
T 4fhn_B 888 IAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMV 963 (1139)
T ss_dssp HHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHH
T ss_pred ccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence 000 011112345778889999999999999999999998764 332 2 56777888999999999776643
No 258
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=86.94 E-value=14 Score=31.58 Aligned_cols=110 Identities=15% Similarity=0.061 Sum_probs=62.4
Q ss_pred HHHHHHHHcCCcHHHHHHHHHH----HhcCCchhHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhhcchhhhcCcchH
Q 024858 32 DMAVVMKQLDRSEEAIEAIKSF----RGLCSKQSQESLDNVLIDLYKKCGKV--EEQIEMLKRKLRLIYQGEAFNGKPTK 105 (261)
Q Consensus 32 ~Lg~~~~~~g~~~eAi~~~~~~----~~~~P~~~~~~~~~~L~~ly~~~g~~--~eA~~~~~~al~l~~~~~~~~~~~~~ 105 (261)
.+..=|..++++++|++++... ++..-...-..+...+.++|.+.+-. ++.+.-+.+.+...|+...-. .+
T Consensus 38 tl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r---~~ 114 (312)
T 2wpv_A 38 TIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNL---KD 114 (312)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTH---HH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchH---HH
Confidence 3556677888999999876542 22222222334555667777776553 444444444444434321100 00
Q ss_pred HHhhchhhhh--hhc---CCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 024858 106 TARSHGKKFQ--VSV---RQETSRLLGNLAWAYMQKTNFMAAEVVYQ 147 (261)
Q Consensus 106 ~~~~~~~~~~--~~l---~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~ 147 (261)
.. .+.+. ... .-.+|+.|..+|..|...|++.+|..+|-
T Consensus 115 fi---~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 115 VI---TGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp HH---HHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HH---HHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 00 00000 001 12478999999999999999999999885
No 259
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=86.40 E-value=12 Score=30.64 Aligned_cols=151 Identities=19% Similarity=0.155 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc---chhhhcCcc-
Q 024858 28 SALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIY---QGEAFNGKP- 103 (261)
Q Consensus 28 ~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~---~~~~~~~~~- 103 (261)
+-+..++.+.-|.+||++.+...+++...+|.-..+ =.|+|...|.. .+...|.++++.. +...-.+..
T Consensus 6 e~~v~~AklaeqaeRyddm~~~mk~v~~~~~eLt~E-ERnLLsvayKn------vig~rR~swRiissieqk~~~k~~~~ 78 (234)
T 2br9_A 6 EDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVE-ERNLLSVAYKN------VIGARRASWRIISSIEQKEENKGGED 78 (234)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTTCSCCCHH-HHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHhcccCCCCHH-HHHHHHHHHHH------HHhhhHHHHHHHHHHHHHhhccCchH
Confidence 345678889999999999999999999988752222 24556555432 3333333333310 000000000
Q ss_pred ---------h----HHHhhchhhhh---hhcCCC--c--HHH--HHHHHHHHHH----------cCCHHHHHHHHHHHHh
Q 024858 104 ---------T----KTARSHGKKFQ---VSVRQE--T--SRL--LGNLAWAYMQ----------KTNFMAAEVVYQKAQM 151 (261)
Q Consensus 104 ---------~----~~~~~~~~~~~---~~l~p~--~--~~~--~~~Lg~~~~~----------~g~~~eA~~~~~~al~ 151 (261)
. .+...+...+. -.+-|. + ..+ +-..|..|.- ..-.+.|...|++|+.
T Consensus 79 ~~~~i~~yr~kie~EL~~iC~~il~lld~~Lip~a~~~eskVFy~KmKGDyyRYlaE~~~g~~r~~~~e~a~~aY~~A~~ 158 (234)
T 2br9_A 79 KLKMIREYRQMVETELKLICCDILDVLDKHLIPAANTGESKVFYYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASD 158 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhccCCCchHhHHHHHHHhccHHHHHHHHcCchHHHHHHHHHHHHHHHHHH
Confidence 0 00000000010 011111 1 111 1234544432 2233578889999885
Q ss_pred -----hCCCchh----hhhHHHHHHH-cCCHHHHHHHHHHHHhC
Q 024858 152 -----IDPDANK----ACNLGLCLIK-RTRYNEARSVLEDVLYG 185 (261)
Q Consensus 152 -----~~P~~~~----~~~L~~~l~~-~g~~~eA~~~~~~~l~~ 185 (261)
+.|.+|- ..|.+.+|.+ +|+.++|..+.++++..
T Consensus 159 iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd~ 202 (234)
T 2br9_A 159 IAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDD 202 (234)
T ss_dssp HHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5788874 3466666665 79999999998887774
No 260
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=84.61 E-value=19 Score=33.77 Aligned_cols=58 Identities=14% Similarity=0.137 Sum_probs=43.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 127 GNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 127 ~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
...+.++ +.|+++.|...+++.-.-.++... .+-+|.++..+|+.++|..+|+++...
T Consensus 290 ~~~r~Al-r~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~ 348 (618)
T 1qsa_A 290 RRVRMAL-GTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ 348 (618)
T ss_dssp HHHHHHH-HHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHH-HCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Confidence 3445554 569999999999775442223344 678999999999999999999998763
No 261
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=79.63 E-value=29 Score=29.85 Aligned_cols=109 Identities=19% Similarity=0.172 Sum_probs=62.3
Q ss_pred HHHHHHHHcCCcHHHHHHHHHH----HhcCCchhHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhhcchh-hhc---C
Q 024858 32 DMAVVMKQLDRSEEAIEAIKSF----RGLCSKQSQESLDNVLIDLYKKCGK--VEEQIEMLKRKLRLIYQGE-AFN---G 101 (261)
Q Consensus 32 ~Lg~~~~~~g~~~eAi~~~~~~----~~~~P~~~~~~~~~~L~~ly~~~g~--~~eA~~~~~~al~l~~~~~-~~~---~ 101 (261)
.++.=|..++++++|++++-.. ++..-...-.++...+.++|.+.+- .++...-+-+.+...|+.. ... .
T Consensus 40 Ti~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~ 119 (336)
T 3lpz_A 40 LVAARYSKQGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVK 119 (336)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHH
Confidence 3556678899999999876532 2222222234456667788877653 2344444444444444321 100 0
Q ss_pred -cchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 024858 102 -KPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVY 146 (261)
Q Consensus 102 -~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~ 146 (261)
-..... .++ .-.-.+|+.+..+|..|.+.+++.+|..+|
T Consensus 120 ~ai~WS~-~~g-----~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 120 EMIDWSK-KFG-----DYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHHHHHH-HHS-----SCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHh-hcC-----CCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 000000 000 112257889999999999999999999988
No 262
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=76.79 E-value=32 Score=34.59 Aligned_cols=126 Identities=12% Similarity=-0.028 Sum_probs=79.8
Q ss_pred CCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHh-cCCc--------------------hhHHHHHHHHHHHHHHcCCHHH
Q 024858 23 GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRG-LCSK--------------------QSQESLDNVLIDLYKKCGKVEE 81 (261)
Q Consensus 23 ~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~-~~P~--------------------~~~~~~~~~L~~ly~~~g~~~e 81 (261)
-|.++..-+.+|.++...|++++|...++++.. +.++ ......+.-...++.+.|.++-
T Consensus 838 ~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~ 917 (1139)
T 4fhn_B 838 LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYID 917 (1139)
T ss_dssp SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHH
T ss_pred ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHH
Confidence 355555668899999999999999999987632 1111 0001123345567788888888
Q ss_pred HHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch---h
Q 024858 82 QIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN---K 158 (261)
Q Consensus 82 A~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~---~ 158 (261)
+++.-+.|+...+++. ... ....|.++=..+...|+|++|..++.. .|+.. .
T Consensus 918 vi~fa~lAi~~~~~~~--------------~~~-------~~~l~~~iFk~~L~l~~ye~Ay~aL~~----~pd~~~r~~ 972 (1139)
T 4fhn_B 918 ALEFSLLADASKETDD--------------EDL-------SIAITHETLKTACAAGKFDAAHVALMV----LSTTPLKKS 972 (1139)
T ss_dssp HHHHHHHHHHHCCSCC--------------HHH-------HHHHHHHHHHHHHHHCCSGGGGHHHHH----HHHSSSCHH
T ss_pred HHHHHHHHHHhccCCC--------------hhh-------HHHHHHHHHHHHHhhCCHHHHHHHHHh----CCCHHHHHH
Confidence 8888888887532110 000 123677888888999999999776644 23332 2
Q ss_pred -hhhHHHHHHHcCCHH
Q 024858 159 -ACNLGLCLIKRTRYN 173 (261)
Q Consensus 159 -~~~L~~~l~~~g~~~ 173 (261)
...|-..+++.|..+
T Consensus 973 cLr~LV~~lce~~~~~ 988 (1139)
T 4fhn_B 973 CLLDFVNQLTKQGKIN 988 (1139)
T ss_dssp HHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHhCCChh
Confidence 345555566665543
No 263
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=74.06 E-value=33 Score=28.47 Aligned_cols=47 Identities=13% Similarity=0.041 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHh-----h--CCCchh----hhhHHHHHH-HcCCHHHHHHHHHHHHhC
Q 024858 139 FMAAEVVYQKAQM-----I--DPDANK----ACNLGLCLI-KRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 139 ~~eA~~~~~~al~-----~--~P~~~~----~~~L~~~l~-~~g~~~eA~~~~~~~l~~ 185 (261)
.+.|...|++|+. + .|.+|- ..|.+.+|. -+++.++|..+.++++..
T Consensus 168 ~e~a~~aYq~A~eiA~~~L~~~pThPiRLGLaLNfSVFyYEIln~p~~Ac~lAk~AFde 226 (268)
T 3efz_A 168 IKQAVEFYEDALQRERSFLEKYPSDPLYLATILNYTILKYDLLGNPEGAMKFANRAIQA 226 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4678889999875 4 677774 346666655 469999999999998875
No 264
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=73.49 E-value=12 Score=24.58 Aligned_cols=27 Identities=7% Similarity=0.266 Sum_probs=23.0
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHhcCCc
Q 024858 33 MAVVMKQLDRSEEAIEAIKSFRGLCSK 59 (261)
Q Consensus 33 Lg~~~~~~g~~~eAi~~~~~~~~~~P~ 59 (261)
+|-.+..+|++++|+.++-+++..+|.
T Consensus 23 ~GE~L~~~g~~~~~~~hf~nAl~Vc~q 49 (73)
T 3ax2_A 23 LGEELLAQGDYEKGVDHLTNAIAVCGQ 49 (73)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 788888888888888888888888887
No 265
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=72.37 E-value=40 Score=27.86 Aligned_cols=152 Identities=19% Similarity=0.155 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc---chhhhcCcc
Q 024858 27 DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIY---QGEAFNGKP 103 (261)
Q Consensus 27 ~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~---~~~~~~~~~ 103 (261)
-+-+..++.+.-|.+||++.++..+++...++.-..+ =.|+|...|. ..+...|.++++.. +...-.|..
T Consensus 31 re~lv~~AKLaeqaeRYddMv~~MK~v~~~~~eLt~E-ERNLLSvAYK------NvIgarR~swRiissieqkee~~g~~ 103 (261)
T 3ubw_A 31 REDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVE-ERNLLSVAYK------NVIGARRASWRIISSIEQKEENKGGE 103 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHH-HHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCcCCHH-HHHHHHHHHH------hccCCchhHHHHHhHHHHhhhccccH
Confidence 3456778999999999999999999999988752222 2444554442 22333333333210 000000000
Q ss_pred --------------hHHHhhchhhhhh---hcCCC--cH--HH--HHHHHHHHHHc----------CCHHHHHHHHHHHH
Q 024858 104 --------------TKTARSHGKKFQV---SVRQE--TS--RL--LGNLAWAYMQK----------TNFMAAEVVYQKAQ 150 (261)
Q Consensus 104 --------------~~~~~~~~~~~~~---~l~p~--~~--~~--~~~Lg~~~~~~----------g~~~eA~~~~~~al 150 (261)
..+...+...+.+ .+-|+ ++ .+ +-..|..|.-. .-.+.|...|++|+
T Consensus 104 ~~~~~i~~yr~kIe~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlAE~~~g~~rk~~~e~a~~aY~~A~ 183 (261)
T 3ubw_A 104 DKLKMIREYRQMVETELKLICCDILDVLDKHLIPAANTGESKVFYYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAAS 183 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCcHHHHHHHHHhhccHHHHHHhhcCchHHHHHHHHHHHHHHHHH
Confidence 0000000111110 11111 11 12 22345555321 22367888999987
Q ss_pred h-----hCCCchh----hhhHHHHHHH-cCCHHHHHHHHHHHHhC
Q 024858 151 M-----IDPDANK----ACNLGLCLIK-RTRYNEARSVLEDVLYG 185 (261)
Q Consensus 151 ~-----~~P~~~~----~~~L~~~l~~-~g~~~eA~~~~~~~l~~ 185 (261)
. +.|.+|- ..|.+.+|.+ +++.++|..+.++++..
T Consensus 184 ~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd~ 228 (261)
T 3ubw_A 184 DIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDD 228 (261)
T ss_dssp HHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5 5688874 3466666666 69999999998887764
No 266
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=71.08 E-value=6.2 Score=27.28 Aligned_cols=28 Identities=14% Similarity=0.009 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 024858 124 RLLGNLAWAYMQKTNFMAAEVVYQKAQM 151 (261)
Q Consensus 124 ~~~~~Lg~~~~~~g~~~eA~~~~~~al~ 151 (261)
-.+...+..+...|+|+|||.+.++|..
T Consensus 16 H~~~RrAe~ll~~gkydeAIech~kAa~ 43 (97)
T 2crb_A 16 HQQSRRADRLLAAGKYEEAISCHRKATT 43 (97)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHhhhHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3456678888899999999998888764
No 267
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=70.66 E-value=42 Score=27.33 Aligned_cols=151 Identities=19% Similarity=0.127 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc---chhh--hc-C
Q 024858 28 SALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIY---QGEA--FN-G 101 (261)
Q Consensus 28 ~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~---~~~~--~~-~ 101 (261)
+-+..++.+.-|.+||++.++..+++...++.-..+ =.|+|...|. ..+...|.++++.. +... .+ .
T Consensus 9 e~~v~~AklaeqaeRyddM~~~mk~v~~~~~eLs~E-ERnLLSvaYK------Nvig~rR~swRiissieqke~~~~~~~ 81 (236)
T 3iqu_A 9 ASLIQKAKLAEQAERYEDMAAFMKGAVEKGEELSCE-ERNLLSVAYK------NVVGGQRAAWRVLSSIEQKSNEEGSEE 81 (236)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCCHH-HHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHTSTTCCC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCCcCCHH-HHHHHHHHHH------hhcccchHHHHHHHHHHHHHhhcCCHH
Confidence 446678899999999999999999999988862222 2455665543 33444444444321 1100 00 0
Q ss_pred --cc-----hH----HHhhchhhhhh---hcCCC--cHH--H--HHHHHHHHHH-----cCC-----HHHHHHHHHHHHh
Q 024858 102 --KP-----TK----TARSHGKKFQV---SVRQE--TSR--L--LGNLAWAYMQ-----KTN-----FMAAEVVYQKAQM 151 (261)
Q Consensus 102 --~~-----~~----~~~~~~~~~~~---~l~p~--~~~--~--~~~Lg~~~~~-----~g~-----~~eA~~~~~~al~ 151 (261)
.. .+ +...+...+.+ .+-|+ +++ + +-..|..|.- .|+ .+.|...|++|..
T Consensus 82 ~~~~i~~yr~kie~EL~~iC~dil~lld~~Lip~a~~~eskVFY~KmKGDyyRYlAE~~~g~~r~~~~e~a~~aY~~A~~ 161 (236)
T 3iqu_A 82 KGPEVREYREKVETELQGVCDTVLGLLDSHLIKEAGDAESRVFYLKMKGDYYRYLAEVATGDDKKRIIDSARSAYQEAMD 161 (236)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCchHHHHHHHHhhhhHHHHHHHhcCchHHHHHHHHHHHHHHHHHH
Confidence 00 00 00000111110 11111 111 2 2245666532 343 4678889999875
Q ss_pred -----hCCCchh----hhhHHHHHH-HcCCHHHHHHHHHHHHhC
Q 024858 152 -----IDPDANK----ACNLGLCLI-KRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 152 -----~~P~~~~----~~~L~~~l~-~~g~~~eA~~~~~~~l~~ 185 (261)
+.|.+|- ..|.+.+|. -+++.++|....++++..
T Consensus 162 iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Afd~ 205 (236)
T 3iqu_A 162 ISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFDE 205 (236)
T ss_dssp HHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred HHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6788884 346666655 459999999988887764
No 268
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=70.49 E-value=74 Score=31.29 Aligned_cols=115 Identities=9% Similarity=0.049 Sum_probs=69.1
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchh
Q 024858 33 MAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGK 112 (261)
Q Consensus 33 Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~ 112 (261)
+...+...|.++-| +......|.++. .-+++|.+|...|++++|..+|+++-.-...+.. ....... . ..
T Consensus 816 l~~~L~~~~~~~~a----~eL~~~~~~t~~--~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~-~~~~~~~--~-~~ 885 (950)
T 4gq2_M 816 LVEKLFLFKQYNAC----MQLIGWLNSDPI--AVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTS-QFAVLRE--F-QE 885 (950)
T ss_dssp HHHHHHHTTCHHHH----HHHGGGCCSSHH--HHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCC-SCGGGHH--H-HH
T ss_pred HHHHHHHhcHHHHH----HHHHhhcCCChH--HHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcc-cccchhh--h-hh
Confidence 55666777877644 446677787543 2467999999999999999999986322110000 0000000 0 00
Q ss_pred hhh-hhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCch
Q 024858 113 KFQ-VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMI-DPDAN 157 (261)
Q Consensus 113 ~~~-~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~-~P~~~ 157 (261)
.+. ...+.-....+.++..++.+.+-++-++..-+.|++. .+++.
T Consensus 886 ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~ 932 (950)
T 4gq2_M 886 IAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDE 932 (950)
T ss_dssp HHHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCH
T ss_pred ccCcccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCc
Confidence 000 0111112346778888899999999999999999864 34444
No 269
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=67.43 E-value=81 Score=29.43 Aligned_cols=163 Identities=9% Similarity=0.021 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 024858 9 PEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKR 88 (261)
Q Consensus 9 ~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~ 88 (261)
..++..++.++....++....-...+.. ...|++..|...++.+-...+. ...+.+-+|..+.+.|+.++|...|++
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~e~~~r~A-lr~~d~~~a~~~~~~l~~~~~~--~~r~~YW~~ra~~~~g~~~~a~~~~~~ 344 (618)
T 1qsa_A 268 TDEQAKWRDDAIMRSQSTSLIERRVRMA-LGTGDRRGLNTWLARLPMEAKE--KDEWRYWQADLLLERGREAEAKEILHQ 344 (618)
T ss_dssp CHHHHHHHHHHHHTCCCHHHHHHHHHHH-HHHTCHHHHHHHHHHSCTTGGG--SHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ChHHHHHHHhccccCCChHHHHHHHHHH-HHCCCHHHHHHHHHHccccccc--cHhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5667778877666544443333334444 4569999999998775442222 233566688899999999999999999
Q ss_pred HHHhhcchhhhcCcchHHHhhchhhhhh---hcCCCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchhhh
Q 024858 89 KLRLIYQGEAFNGKPTKTARSHGKKFQV---SVRQET-----SRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKAC 160 (261)
Q Consensus 89 al~l~~~~~~~~~~~~~~~~~~~~~~~~---~l~p~~-----~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~ 160 (261)
+..- . .|.|... ....+..+.+ .+.++. .......+..+.+.|...+|...+..++.. .+.....
T Consensus 345 ~a~~--~--~fYg~lA--a~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~-~~~~~~~ 417 (618)
T 1qsa_A 345 LMQQ--R--GFYPMVA--AQRIGEEYELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS-KSKTEQA 417 (618)
T ss_dssp HHTS--C--SHHHHHH--HHHTTCCCCCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT-CCHHHHH
T ss_pred HhcC--C--ChHHHHH--HHHcCCCCCCCCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc-CCHHHHH
Confidence 8752 1 1111000 0000100000 011100 112245567788999999999999888764 2323366
Q ss_pred hHHHHHHHcCCHHHHHHHHHH
Q 024858 161 NLGLCLIKRTRYNEARSVLED 181 (261)
Q Consensus 161 ~L~~~l~~~g~~~eA~~~~~~ 181 (261)
.++.+....|.++.++....+
T Consensus 418 ~la~~a~~~~~~~~~v~~~~~ 438 (618)
T 1qsa_A 418 QLARYAFNNQWWDLSVQATIA 438 (618)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCChHHHHHHHHH
Confidence 778888888988888765543
No 270
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=67.25 E-value=24 Score=32.29 Aligned_cols=65 Identities=11% Similarity=0.105 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc----h---h-hhhHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 024858 123 SRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDA----N---K-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPG 189 (261)
Q Consensus 123 ~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~----~---~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~~~~ 189 (261)
+.+++.|=..|...+.|+.|..+..++. .|.+ . . .+.+|.++.-+++|.+|.+.+..++...+++
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 3466668999999999999999999985 4432 2 2 3578999999999999999999999864433
No 271
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=65.02 E-value=54 Score=26.50 Aligned_cols=144 Identities=15% Similarity=-0.006 Sum_probs=80.2
Q ss_pred HHHHHHHHcCCcHHHHHHHHHHHh----cCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc---chhhhcCcc-
Q 024858 32 DMAVVMKQLDRSEEAIEAIKSFRG----LCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIY---QGEAFNGKP- 103 (261)
Q Consensus 32 ~Lg~~~~~~g~~~eAi~~~~~~~~----~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~---~~~~~~~~~- 103 (261)
.++.+.-+.+||++.++..+++.. .+|.-..+ =.|+|...|. ..+...|.++++.. +.. .+..
T Consensus 11 ~~AKlaeqaeRyddM~~~mk~v~~~~~~~~~eLt~E-ERnLLSvAYK------Nvig~rR~swRiissiEqke--k~~~~ 81 (227)
T 2o8p_A 11 YRAQVFEWGGCFDKMFEALKSLIYLSEFENSEFDDE-ERHLLTLCIK------HKISDYRTMTSQVLQEQTKQ--LNNDE 81 (227)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHH------HHHHHHHHHHHHHHHHHHHS--CSCHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhhhccCCCCCHH-HHHHHHHHHH------HhhcccHHHHHHHHHHHHHH--cCCHH
Confidence 678889999999999999999988 67642122 2455555442 23333333333311 000 0000
Q ss_pred -------------hHHHhhchhhhh---hhcCCCc-HHH--HHHHHHHHH-----HcCCHHHHHHHHHHHHh-----hCC
Q 024858 104 -------------TKTARSHGKKFQ---VSVRQET-SRL--LGNLAWAYM-----QKTNFMAAEVVYQKAQM-----IDP 154 (261)
Q Consensus 104 -------------~~~~~~~~~~~~---~~l~p~~-~~~--~~~Lg~~~~-----~~g~~~eA~~~~~~al~-----~~P 154 (261)
..+..-+...+. -.+-|.. ..+ +-..|..|. ..|+.+.|...|+.|.. +.|
T Consensus 82 ~~~~i~~yr~kie~EL~~iC~dil~lld~~Lip~aEskVFY~KMKGDYyRYlAE~~~g~~e~a~~aY~~A~~iA~~~L~p 161 (227)
T 2o8p_A 82 LVKICSEYVFSLRKDIKAFLQSFEDCVDRLVEKSFFSKFFKLKVKSDISRYKLEFGLCSLEDSKKIHQDAFTLLCEHPDK 161 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCcHHHHHHHHHHhhhHHHHHHHHccccHHHHHHHHHHHHHHHHhhCCC
Confidence 000000011111 1233432 112 223465553 35678999999999986 456
Q ss_pred Cchh----hhhHHHHHH-HcCCHHHHHHHHHHHHh
Q 024858 155 DANK----ACNLGLCLI-KRTRYNEARSVLEDVLY 184 (261)
Q Consensus 155 ~~~~----~~~L~~~l~-~~g~~~eA~~~~~~~l~ 184 (261)
.+|- ..|.+.+|. -+++.++|....++++.
T Consensus 162 thPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd 196 (227)
T 2o8p_A 162 IEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGK 196 (227)
T ss_dssp GGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 6663 345555444 56899999999998865
No 272
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=64.19 E-value=9.9 Score=25.61 Aligned_cols=27 Identities=22% Similarity=0.022 Sum_probs=19.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 024858 126 LGNLAWAYMQKTNFMAAEVVYQKAQMI 152 (261)
Q Consensus 126 ~~~Lg~~~~~~g~~~eA~~~~~~al~~ 152 (261)
+...|.-....|++++|+.+|..+++.
T Consensus 22 lv~~Ave~D~~g~y~eAl~lY~~aie~ 48 (83)
T 2w2u_A 22 YAINAVKADKEGNAEEAITNYKKAIEV 48 (83)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 455666677788888888877777653
No 273
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=63.62 E-value=7.8 Score=26.77 Aligned_cols=24 Identities=25% Similarity=0.253 Sum_probs=20.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Q 024858 69 LIDLYKKCGKVEEQIEMLKRKLRL 92 (261)
Q Consensus 69 L~~ly~~~g~~~eA~~~~~~al~l 92 (261)
.++-+.+.|+|++||++.+++...
T Consensus 21 rAe~ll~~gkydeAIech~kAa~y 44 (97)
T 2crb_A 21 RADRLLAAGKYEEAISCHRKATTY 44 (97)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHH
Confidence 456667899999999999998875
No 274
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=62.92 E-value=25 Score=24.32 Aligned_cols=27 Identities=7% Similarity=0.266 Sum_probs=22.5
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHhcCCc
Q 024858 33 MAVVMKQLDRSEEAIEAIKSFRGLCSK 59 (261)
Q Consensus 33 Lg~~~~~~g~~~eAi~~~~~~~~~~P~ 59 (261)
+|-.+..+|.++.|+.++-+++..+|.
T Consensus 26 lGE~L~~~g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 26 LGEELLAQGDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 788888888888888888778878776
No 275
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=62.20 E-value=13 Score=24.48 Aligned_cols=32 Identities=6% Similarity=0.006 Sum_probs=27.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh
Q 024858 127 GNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK 158 (261)
Q Consensus 127 ~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~ 158 (261)
..+|..+..+|++++|..+|-+|+..-|+-..
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~ 52 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQ 52 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHH
Confidence 46899999999999999999999998877654
No 276
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=62.17 E-value=11 Score=25.31 Aligned_cols=25 Identities=24% Similarity=0.078 Sum_probs=16.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Q 024858 127 GNLAWAYMQKTNFMAAEVVYQKAQM 151 (261)
Q Consensus 127 ~~Lg~~~~~~g~~~eA~~~~~~al~ 151 (261)
...|.-....|+|++|+.+|..+++
T Consensus 15 v~~Ave~D~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 15 AILAVKADKEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4455556677777777777766655
No 277
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=61.94 E-value=67 Score=26.52 Aligned_cols=152 Identities=16% Similarity=0.142 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcC--CchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc---chhhhcC
Q 024858 27 DSALKDMAVVMKQLDRSEEAIEAIKSFRGLC--SKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIY---QGEAFNG 101 (261)
Q Consensus 27 ~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~--P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~---~~~~~~~ 101 (261)
-+-+..++.+.-|.+||++.+...+++...+ |.-..+ =.|+|...| +..+...|.++++.. +.....+
T Consensus 8 re~~v~~AkLaeqaeRyddm~~~mk~v~~~~~~~eLt~E-ERnLLSvaY------KNvig~rR~swRiissieqke~~k~ 80 (260)
T 1o9d_A 8 REENVYMAKLAEQAERYEEMVEFMEKVSNSLGSEELTVE-ERNLLSVAY------KNVIGARRASWRIISSIEQKEESRG 80 (260)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTCSSSCCCHH-HHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCCCHH-HHHHHHHHH------HHhhcchHHHHHHHHHHHHHhhccC
Confidence 3456678999999999999999999999987 642122 244455443 333444444443321 0000000
Q ss_pred cc----------h----HHHhhchhhhh---hhcCCC--c--HHHH--HHHHHHHHHc----------CCHHHHHHHHHH
Q 024858 102 KP----------T----KTARSHGKKFQ---VSVRQE--T--SRLL--GNLAWAYMQK----------TNFMAAEVVYQK 148 (261)
Q Consensus 102 ~~----------~----~~~~~~~~~~~---~~l~p~--~--~~~~--~~Lg~~~~~~----------g~~~eA~~~~~~ 148 (261)
.. . .+...+...+. -.+-|. + ..+. -..|..|.-. .-.+.|...|++
T Consensus 81 ~~~~~~~i~~yr~kie~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlaE~~~g~~r~~~~e~a~~aY~~ 160 (260)
T 1o9d_A 81 NEEHVNSIREYRSKIENELSKICDGILKLLDAKLIPSAASGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLTAYKA 160 (260)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCCCCCchhHHHHHHHhccHHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence 00 0 00000001111 011111 1 1122 2345555321 223578889999
Q ss_pred HHh-----hCCCchh----hhhHHHHHHH-cCCHHHHHHHHHHHHhC
Q 024858 149 AQM-----IDPDANK----ACNLGLCLIK-RTRYNEARSVLEDVLYG 185 (261)
Q Consensus 149 al~-----~~P~~~~----~~~L~~~l~~-~g~~~eA~~~~~~~l~~ 185 (261)
|+. +.|.+|- ..|.+.+|.+ +++.++|..+.++++..
T Consensus 161 A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~ 207 (260)
T 1o9d_A 161 AQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDE 207 (260)
T ss_dssp HHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 885 5788884 3466666665 69999999999888764
No 278
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=61.17 E-value=58 Score=32.21 Aligned_cols=24 Identities=8% Similarity=0.152 Sum_probs=11.9
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHh
Q 024858 161 NLGLCLIKRTRYNEARSVLEDVLY 184 (261)
Q Consensus 161 ~L~~~l~~~g~~~eA~~~~~~~l~ 184 (261)
.+|.+|...|+...-..++..+..
T Consensus 565 alglAyaGTGn~~aIq~LL~~~~~ 588 (963)
T 4ady_A 565 TIALAYAGTGNNSAVKRLLHVAVS 588 (963)
T ss_dssp HHHHHTTTSCCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHhcc
Confidence 455555566664333334444444
No 279
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=60.31 E-value=46 Score=25.10 Aligned_cols=60 Identities=8% Similarity=0.102 Sum_probs=41.0
Q ss_pred HHHHH-HHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 024858 31 KDMAV-VMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRL 92 (261)
Q Consensus 31 ~~Lg~-~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l 92 (261)
..+|. .+..+|+-++=-+.++..+.-.|-. .++..-++..|.+.|...+|-+++++|-+.
T Consensus 94 vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~--~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 94 VNKALDILVIQGKRDKLEEIGREILKNNEVS--ASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC--CCSC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccHhHHHHHHHHHhccCCCC--hHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 33443 4467788887777877765544322 234555889999999999999999998764
No 280
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=58.47 E-value=77 Score=26.13 Aligned_cols=152 Identities=15% Similarity=0.113 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcC---CchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc---chhhhc
Q 024858 27 DSALKDMAVVMKQLDRSEEAIEAIKSFRGLC---SKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIY---QGEAFN 100 (261)
Q Consensus 27 ~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~---P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~---~~~~~~ 100 (261)
-+-+..++.+.-|.+||++.+.+.+++...+ |.-..+ =.|+|...|.. .+...+.++++.. +.....
T Consensus 28 re~~v~~AkLaeqaeRyddmv~~mk~v~~~~~~~~eLt~E-ERnLLSvAyKN------vIg~rR~swRiissieqke~~k 100 (260)
T 2npm_A 28 RESNVYMAKLAEQAERYDEMAKYMKDVVEARQESEELTVE-ERNLLSVAYKN------AVGSRRSSWRIISSVEQKEHSR 100 (260)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC--CCCHH-HHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCCCCHH-HHHHHHHHHHH------HhccchHHHHHHHHHHHHhhcc
Confidence 3456678999999999999999999999887 642122 24556655533 3333433333321 000000
Q ss_pred Ccc--------------hHHHhhchhhhh---hhcCCC--c--HHHH--HHHHHHHHH----------cCCHHHHHHHHH
Q 024858 101 GKP--------------TKTARSHGKKFQ---VSVRQE--T--SRLL--GNLAWAYMQ----------KTNFMAAEVVYQ 147 (261)
Q Consensus 101 ~~~--------------~~~~~~~~~~~~---~~l~p~--~--~~~~--~~Lg~~~~~----------~g~~~eA~~~~~ 147 (261)
+.. ..+...+...+. -.+-|. + ..+. -..|..|.- ..-.+.|...|+
T Consensus 101 ~~~~~~~~i~~yr~kie~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlaE~~~g~~r~~~~e~a~~aY~ 180 (260)
T 2npm_A 101 NAEDASKMCGKYRSKVEAELTDICNDILTMLDKHLIPTATSPDSKVFYFKMKGDYHRYISEFSTGDSKQSSAEDALKAYK 180 (260)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhccCCCchHHHHHHHHHhccHHHHHHHhcCchHHHHHHHHHHHHHH
Confidence 000 000000001110 011111 1 1121 234555432 223367888999
Q ss_pred HHHh----hCCCchh----hhhHHHHHHH-cCCHHHHHHHHHHHHhC
Q 024858 148 KAQM----IDPDANK----ACNLGLCLIK-RTRYNEARSVLEDVLYG 185 (261)
Q Consensus 148 ~al~----~~P~~~~----~~~L~~~l~~-~g~~~eA~~~~~~~l~~ 185 (261)
+|+. +.|.+|- ..|.+.+|.+ +++.++|..+.++++..
T Consensus 181 ~A~~iA~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~ 227 (260)
T 2npm_A 181 DATVVAKDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFEM 227 (260)
T ss_dssp HHHHHHTTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9986 5677774 3466666665 79999999999888774
No 281
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=58.43 E-value=20 Score=24.24 Aligned_cols=21 Identities=5% Similarity=0.083 Sum_probs=17.0
Q ss_pred HHHHcCCHHHHHHHHHHHHHh
Q 024858 72 LYKKCGKVEEQIEMLKRKLRL 92 (261)
Q Consensus 72 ly~~~g~~~eA~~~~~~al~l 92 (261)
-....|++++|+.+|..+++.
T Consensus 25 e~D~~g~y~eAl~lY~~Aie~ 45 (86)
T 4a5x_A 25 ELDSESRYPQALVCYQEGIDL 45 (86)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 346778999999999998876
No 282
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=55.20 E-value=21 Score=24.07 Aligned_cols=27 Identities=19% Similarity=0.145 Sum_probs=19.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 024858 126 LGNLAWAYMQKTNFMAAEVVYQKAQMI 152 (261)
Q Consensus 126 ~~~Lg~~~~~~g~~~eA~~~~~~al~~ 152 (261)
+..-|.-....|+|++|+.+|..+++.
T Consensus 19 lv~~Ave~D~~g~y~eAl~lY~~Aie~ 45 (86)
T 4a5x_A 19 VLKRAVELDSESRYPQALVCYQEGIDL 45 (86)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 445566668888888888888887754
No 283
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=53.87 E-value=30 Score=27.30 Aligned_cols=34 Identities=15% Similarity=-0.050 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch
Q 024858 124 RLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN 157 (261)
Q Consensus 124 ~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~ 157 (261)
..++.+|.+++.+++|.+|...+..|+..-|...
T Consensus 15 ~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~ 48 (203)
T 3t5x_A 15 TYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSS 48 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhH
Confidence 3567899999999999999999999999988654
No 284
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=53.58 E-value=23 Score=23.62 Aligned_cols=27 Identities=19% Similarity=0.057 Sum_probs=19.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 024858 126 LGNLAWAYMQKTNFMAAEVVYQKAQMI 152 (261)
Q Consensus 126 ~~~Lg~~~~~~g~~~eA~~~~~~al~~ 152 (261)
+...|.-....|++++|+.+|..+++.
T Consensus 16 l~~~Av~~D~~g~y~eAl~~Y~~aie~ 42 (85)
T 2v6x_A 16 LVQKAIDLDTATQYEEAYTAYYNGLDY 42 (85)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 445566667778888888888777664
No 285
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=53.26 E-value=18 Score=24.75 Aligned_cols=28 Identities=18% Similarity=0.134 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 024858 125 LLGNLAWAYMQKTNFMAAEVVYQKAQMI 152 (261)
Q Consensus 125 ~~~~Lg~~~~~~g~~~eA~~~~~~al~~ 152 (261)
-+...|.-....|+|++|+.+|..+++.
T Consensus 17 ~lv~~Ave~D~~g~y~eAl~~Y~~Aie~ 44 (93)
T 1wfd_A 17 AVLKRAVELDAESRYQQALVCYQEGIDM 44 (93)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3455666777788888888877777654
No 286
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=51.86 E-value=76 Score=24.10 Aligned_cols=62 Identities=6% Similarity=-0.068 Sum_probs=44.9
Q ss_pred HHHHHHHHHcCCcHHHHHHHHHHHhcCCch--hHHHH----H-HHHHHHHHHcCCHHHHHHHHHHHHHh
Q 024858 31 KDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ--SQESL----D-NVLIDLYKKCGKVEEQIEMLKRKLRL 92 (261)
Q Consensus 31 ~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~--~~~~~----~-~~L~~ly~~~g~~~eA~~~~~~al~l 92 (261)
..-|..+...|+|-+|=+.++.+.+..|+. ....+ . ..-|....+.|+..-|..++++++..
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 445777888899999999999999876542 11111 1 11233446789999999999999885
No 287
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=51.43 E-value=31 Score=23.08 Aligned_cols=24 Identities=13% Similarity=-0.074 Sum_probs=18.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 162 LGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 162 L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
-|.-.-+.|++++|+.+|.+++..
T Consensus 25 ~Ave~D~~g~y~eAl~lY~~aie~ 48 (83)
T 2w2u_A 25 NAVKADKEGNAEEAITNYKKAIEV 48 (83)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHH
Confidence 345567789999999999887773
No 288
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=49.76 E-value=60 Score=31.96 Aligned_cols=67 Identities=10% Similarity=0.020 Sum_probs=50.7
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CC--------------------Cch--h-hhhHHHHHHHcCCHHH
Q 024858 119 RQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMI-DP--------------------DAN--K-ACNLGLCLIKRTRYNE 174 (261)
Q Consensus 119 ~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~-~P--------------------~~~--~-~~~L~~~l~~~g~~~e 174 (261)
-|.++..-+-+|.+|...|++++|..+|++|-.- .+ +.. . +.++...+.+.+-++-
T Consensus 836 ~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~ 915 (950)
T 4gq2_M 836 LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYID 915 (950)
T ss_dssp CCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHHHHHHTTCHHH
T ss_pred cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccchhHHHHHHHHHHHHhcCCHHH
Confidence 3566666788999999999999999999987631 11 111 1 3467778888899999
Q ss_pred HHHHHHHHHhC
Q 024858 175 ARSVLEDVLYG 185 (261)
Q Consensus 175 A~~~~~~~l~~ 185 (261)
+++..+.++..
T Consensus 916 vi~fA~lAI~~ 926 (950)
T 4gq2_M 916 ALEFSLLADAS 926 (950)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhh
Confidence 99999998875
No 289
>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=47.26 E-value=31 Score=23.55 Aligned_cols=16 Identities=25% Similarity=0.376 Sum_probs=9.8
Q ss_pred chhhHHHHHHHHHHHH
Q 024858 192 DGRTRKRAEELLLELE 207 (261)
Q Consensus 192 ~~~~~~~a~~~l~~l~ 207 (261)
....|++|..+-....
T Consensus 60 ~G~~we~Ar~LQ~KM~ 75 (89)
T 3eab_A 60 QGEQCERARRLQAKMM 75 (89)
T ss_dssp CSHHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHH
Confidence 4556677777665543
No 290
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=47.08 E-value=60 Score=28.40 Aligned_cols=62 Identities=19% Similarity=0.142 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHcCCH--HHHHHHHHHHHhhC-----CCchh-hhhHHHHHHHcCCHHHHHHHHHHHHh
Q 024858 123 SRLLGNLAWAYMQKTNF--MAAEVVYQKAQMID-----PDANK-ACNLGLCLIKRTRYNEARSVLEDVLY 184 (261)
Q Consensus 123 ~~~~~~Lg~~~~~~g~~--~eA~~~~~~al~~~-----P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~ 184 (261)
|-++.|||.+-...--. ..++..|.+|+... ..+.. +..+|.++.+.+++.||++.+-++-.
T Consensus 255 PmALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~ 324 (472)
T 3re2_A 255 PMAIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAGY 324 (472)
T ss_dssp HHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHHH
Confidence 44556666555433222 23788888888753 22333 66789999999999999999986655
No 291
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=46.93 E-value=28 Score=25.03 Aligned_cols=27 Identities=26% Similarity=0.166 Sum_probs=19.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 024858 126 LGNLAWAYMQKTNFMAAEVVYQKAQMI 152 (261)
Q Consensus 126 ~~~Lg~~~~~~g~~~eA~~~~~~al~~ 152 (261)
+...|.-....|+|++|+.+|..+++.
T Consensus 21 lv~~Ave~D~ag~y~eAl~lY~~Aie~ 47 (117)
T 2cpt_A 21 LASKAAQEDKAGNYEEALQLYQHAVQY 47 (117)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 445566667788888888888887764
No 292
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=43.32 E-value=24 Score=24.45 Aligned_cols=32 Identities=6% Similarity=0.006 Sum_probs=25.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh
Q 024858 127 GNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK 158 (261)
Q Consensus 127 ~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~ 158 (261)
..+|..+..+|++++|+.+|-+|+..-|+-..
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~~ 55 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQ 55 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHH
Confidence 46899999999999999988888887665433
No 293
>3ph0_C ASCG; type III secretion system, chapero; 2.40A {Aeromonas hydrophila}
Probab=42.49 E-value=60 Score=20.16 Aligned_cols=52 Identities=12% Similarity=0.090 Sum_probs=25.8
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHH
Q 024858 30 LKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQI 83 (261)
Q Consensus 30 l~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~ 83 (261)
+..++.+-....+.+||..+.+-.-. .++. .+.+..+...-+..+|+|++|+
T Consensus 9 LAe~AL~~TG~HcH~EA~tIA~~L~~-~~~~-eE~v~mIr~~SLmNrG~Yq~Al 60 (61)
T 3ph0_C 9 LAELALAGTGHHCHQEAASIADWLAQ-EECM-AECVTLIRLSSLMNQGDYQRAL 60 (61)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHT-SSTT-HHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHccchHHHHHHHHHHHHHh-CCCH-HHHHHHHHHHHHHccchHhHhh
Confidence 33455555666788888776655443 3331 2334444556668899999885
No 294
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=42.16 E-value=93 Score=22.28 Aligned_cols=14 Identities=14% Similarity=0.290 Sum_probs=7.5
Q ss_pred hhhHHHHHHHHHHH
Q 024858 193 GRTRKRAEELLLEL 206 (261)
Q Consensus 193 ~~~~~~a~~~l~~l 206 (261)
...|++|..+...+
T Consensus 67 g~~we~Ar~lq~KM 80 (116)
T 2dl1_A 67 GPGWESARQMQQKM 80 (116)
T ss_dssp CSHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHH
Confidence 44555566655443
No 295
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=41.63 E-value=28 Score=23.23 Aligned_cols=19 Identities=37% Similarity=0.600 Sum_probs=16.4
Q ss_pred HHcCCHHHHHHHHHHHHHh
Q 024858 74 KKCGKVEEQIEMLKRKLRL 92 (261)
Q Consensus 74 ~~~g~~~eA~~~~~~al~l 92 (261)
.+.|++++|+.+|.++++.
T Consensus 22 D~~g~y~eAl~lY~~aie~ 40 (83)
T 2v6y_A 22 DKEGKVEDAITYYKKAIEV 40 (83)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHH
Confidence 5679999999999999886
No 296
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=41.00 E-value=24 Score=23.44 Aligned_cols=48 Identities=17% Similarity=0.199 Sum_probs=24.9
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHhC-C--CCCCcchhhHHHHHHHHHHHH
Q 024858 160 CNLGLCLIKRTRYNEARSVLEDVLYG-R--IPGCEDGRTRKRAEELLLELE 207 (261)
Q Consensus 160 ~~L~~~l~~~g~~~eA~~~~~~~l~~-~--~~~~~~~~~~~~a~~~l~~l~ 207 (261)
..+|.=|...|+|+.|+.+|+.++.. + .....++....+|..+..++.
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~g~~~qI~k~l~~~~d~~~r~kW~~~~~ei~ 66 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQGVLDQMNKYLYSVKDTHLRQKWQQVWQEIN 66 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhcCCHHHHHhHHHHHHHHH
Confidence 34566666666666666666665552 0 001123444455665555543
No 297
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=40.44 E-value=1.7e+02 Score=24.72 Aligned_cols=57 Identities=11% Similarity=-0.048 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHcCCH-HHHHHHHHHHHhhC------C-Cchh-hhhHHHHHHHcCCHHHHHHHHH
Q 024858 124 RLLGNLAWAYMQKTNF-MAAEVVYQKAQMID------P-DANK-ACNLGLCLIKRTRYNEARSVLE 180 (261)
Q Consensus 124 ~~~~~Lg~~~~~~g~~-~eA~~~~~~al~~~------P-~~~~-~~~L~~~l~~~g~~~eA~~~~~ 180 (261)
+....|..++..-..- .+=..+.+++++.. | .++. +..+|..|.+.|++.+|..+|-
T Consensus 93 ~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 93 ISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp HHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 3444555555442211 12244455555422 1 3556 7789999999999999998774
No 298
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=39.82 E-value=86 Score=28.00 Aligned_cols=62 Identities=18% Similarity=0.018 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHcCCHH--HHHHHHHHHHhhC-----CCchh-hhhHHHHHHHcCCHHHHHHHHHHHHh
Q 024858 123 SRLLGNLAWAYMQKTNFM--AAEVVYQKAQMID-----PDANK-ACNLGLCLIKRTRYNEARSVLEDVLY 184 (261)
Q Consensus 123 ~~~~~~Lg~~~~~~g~~~--eA~~~~~~al~~~-----P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~ 184 (261)
|-++.|||.+-...--.. .++..|.+|+... ..+.. +..+|.++.+.+++.||+..+-.+-.
T Consensus 277 PmALgnLgDLEe~~pt~gr~~~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~ 346 (550)
T 3u84_A 277 PMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTAT 346 (550)
T ss_dssp HHHHHHHHHHHHHSCCTTCCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhhcchhhHhhcCCCCCCCCHHHHHHHHHHHHHHHhccCCccceeecchhhhhcchHHHHHHHHHHHHH
Confidence 344555555544332222 4778888887643 22333 66789999999999999999976554
No 299
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=39.74 E-value=43 Score=30.08 Aligned_cols=99 Identities=12% Similarity=-0.042 Sum_probs=62.7
Q ss_pred CcHHHHHHHHHHHhcCCc--h------------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHH
Q 024858 42 RSEEAIEAIKSFRGLCSK--Q------------SQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTA 107 (261)
Q Consensus 42 ~~~eAi~~~~~~~~~~P~--~------------~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~ 107 (261)
+.+++...+.++...+-. + .-..+.+.|-.+|.+.|+..-+..+++.. +-...-..+..
T Consensus 141 ~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i-~~~~~~p~~~~------ 213 (455)
T 3t5v_B 141 FLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNF-QPKSMLAHFNE------ 213 (455)
T ss_dssp HHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTH-HHHCCCSCGGG------
T ss_pred HHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHh-ccCCCCcChhh------
Confidence 456666777776654211 0 01123466779999999999998888653 32110000000
Q ss_pred hhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCc
Q 024858 108 RSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMI-DPDA 156 (261)
Q Consensus 108 ~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~-~P~~ 156 (261)
.... +....++.+|.++..+++|.+|...+..|+.. -|..
T Consensus 214 --~p~~-------q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 214 --YQLD-------QQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp --SCHH-------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred --CCcc-------ceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 0000 12346788999999999999999999999998 6654
No 300
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=38.96 E-value=31 Score=22.91 Aligned_cols=26 Identities=31% Similarity=0.224 Sum_probs=23.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh
Q 024858 127 GNLAWAYMQKTNFMAAEVVYQKAQMI 152 (261)
Q Consensus 127 ~~Lg~~~~~~g~~~eA~~~~~~al~~ 152 (261)
..+|+=|...|+|+.|+.+|+.+++.
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 56788899999999999999999874
No 301
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=38.63 E-value=2e+02 Score=28.40 Aligned_cols=24 Identities=25% Similarity=0.148 Sum_probs=11.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 024858 127 GNLAWAYMQKTNFMAAEVVYQKAQ 150 (261)
Q Consensus 127 ~~Lg~~~~~~g~~~eA~~~~~~al 150 (261)
..+|.+|...|+...-...+..+.
T Consensus 564 ~alglAyaGTGn~~aIq~LL~~~~ 587 (963)
T 4ady_A 564 FTIALAYAGTGNNSAVKRLLHVAV 587 (963)
T ss_dssp HHHHHHTTTSCCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHhc
Confidence 345666666666433333444443
No 302
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=38.19 E-value=96 Score=27.64 Aligned_cols=62 Identities=18% Similarity=0.023 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHcCCH--HHHHHHHHHHHhhC-----CCchh-hhhHHHHHHHcCCHHHHHHHHHHHHh
Q 024858 123 SRLLGNLAWAYMQKTNF--MAAEVVYQKAQMID-----PDANK-ACNLGLCLIKRTRYNEARSVLEDVLY 184 (261)
Q Consensus 123 ~~~~~~Lg~~~~~~g~~--~eA~~~~~~al~~~-----P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~ 184 (261)
|-++.|||.+-.-.... ..++..|.+|+... ..+.. +..+|..+.+.+++.+|++.+-++-.
T Consensus 262 PmALgnLgDLEei~pt~grp~~~~Lf~~AI~~ar~~Y~~~hvYPYtYlgG~~~R~~~~~eAl~~wa~aa~ 331 (489)
T 4gq4_A 262 PMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTAT 331 (489)
T ss_dssp HHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhhhcccCHhhcCCCCCCCCHHHHHHHHHHHHHHhcccCcccceeecchHHHHhhhHHHHHHHhhhhhh
Confidence 55667777766443222 24778888888742 22233 56789999999999999999986654
No 303
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=37.37 E-value=1.3e+02 Score=22.64 Aligned_cols=138 Identities=9% Similarity=-0.033 Sum_probs=82.8
Q ss_pred HHHHHHcCCcHHHHHHHHHHHhcCCch-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchh
Q 024858 34 AVVMKQLDRSEEAIEAIKSFRGLCSKQ-SQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGK 112 (261)
Q Consensus 34 g~~~~~~g~~~eAi~~~~~~~~~~P~~-~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~ 112 (261)
|.-+.-.|..++.++++.+.....|-. .+-...| +. ..-+.+--.+.++..-++..-.. .++..+.. +.+.
T Consensus 14 AK~~ildG~v~qGveii~k~~~ssni~E~NW~ICN-ii----D~a~C~y~v~vLd~IGkiFDis~--C~NlKrVi-~C~~ 85 (172)
T 1wy6_A 14 AKKFLLDGYIDEGVKIVLEITKSSTKSEYNWFICN-LL----ESIDCRYMFQVLDKIGSYFDLDK--CQNLKSVV-ECGV 85 (172)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSCHHHHTHHHHH-HH----HHCCHHHHHHHHHHHGGGSCGGG--CSCTHHHH-HHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHcCCCCccccceeeee-cc----hhhchhHHHHHHHHHhhhcCcHh--hhcHHHHH-HHHH
Confidence 344566799999999999999888752 2212233 22 22444444444444333221100 01111110 0000
Q ss_pred hhhhhcCCCcHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 113 KFQVSVRQETSRLLGNLAW-AYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 113 ~~~~~l~p~~~~~~~~Lg~-~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
..... .=+.++|. ++..+|+-+.=.+.+...+.-+|-+++ ...+|.+|.+.|+..+|-+++.++-..
T Consensus 86 ----~~n~~--se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 86 ----INNTL--NEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp ----HTTCC--CHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ----Hhcch--HHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 00000 12344443 457899999999999998777777788 889999999999999999999998875
No 304
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=36.95 E-value=1.9e+02 Score=24.49 Aligned_cols=44 Identities=14% Similarity=0.177 Sum_probs=35.6
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCcchhhHHHHHHHHHHHHhcCCC
Q 024858 165 CLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELLLELESKQPP 212 (261)
Q Consensus 165 ~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~a~~~l~~l~~~~~~ 212 (261)
...+.++|.-|..+.+++|.. ++ ..+..++|..++..++..+.+
T Consensus 207 ~a~K~KNy~tAa~fArrLLel---~p-~~~~~~qArkil~~ce~~~~d 250 (320)
T 3mkr_B 207 LFFKLKNFRTAAAFARRLLEL---GP-KPEVAQQTRKILSACEKNPTD 250 (320)
T ss_dssp HHHHTTBHHHHHHHHHHHHHT---CC-CHHHHHHHHHHHHHHHHSCCB
T ss_pred HHHHhhhHHHHHHHHHHHHhc---CC-CHHHHHHHHHHHHHHhcCCCC
Confidence 457889999999999999997 22 356778899999999876544
No 305
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=35.70 E-value=95 Score=24.30 Aligned_cols=34 Identities=9% Similarity=-0.128 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCch
Q 024858 27 DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ 60 (261)
Q Consensus 27 ~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~ 60 (261)
....+.+|.++..++++.+|.+.+..+++..|..
T Consensus 14 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~ 47 (203)
T 3t5x_A 14 VTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRS 47 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHh
Confidence 3456678888888888888888888888888863
No 306
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=35.45 E-value=1.2e+02 Score=27.09 Aligned_cols=88 Identities=9% Similarity=0.080 Sum_probs=60.4
Q ss_pred CHHHHHHHHHHHHHc--CCCh----------H-HH---HHHHHHHHHHcCCcHHHHHHHHHHHh--------cCCchhHH
Q 024858 8 DPEAAIVLFWKAINA--GDRV----------D-SA---LKDMAVVMKQLDRSEEAIEAIKSFRG--------LCSKQSQE 63 (261)
Q Consensus 8 ~~~~A~~~~~~al~~--~p~~----------~-~a---l~~Lg~~~~~~g~~~eAi~~~~~~~~--------~~P~~~~~ 63 (261)
.++.+.....++... ++.+ - .+ ...|-.+|.+.|+..-+...++..-. ..|..-..
T Consensus 141 ~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v 220 (455)
T 3t5v_B 141 FLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQI 220 (455)
T ss_dssp HHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceE
Confidence 355677777777752 2111 1 11 23355788999999999988875432 23332234
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hcc
Q 024858 64 SLDNVLIDLYKKCGKVEEQIEMLKRKLRL-IYQ 95 (261)
Q Consensus 64 ~~~~~L~~ly~~~g~~~eA~~~~~~al~l-~~~ 95 (261)
...+.+|.++.-+++|.+|.+.+..|++. .|.
T Consensus 221 ~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~ 253 (455)
T 3t5v_B 221 EYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNL 253 (455)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred eeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCc
Confidence 45677999999999999999999999998 664
No 307
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=34.29 E-value=1.5e+02 Score=22.44 Aligned_cols=58 Identities=7% Similarity=-0.022 Sum_probs=45.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCc--hh-----hhh-H--HHHHHHcCCHHHHHHHHHHHHh
Q 024858 127 GNLAWAYMQKTNFMAAEVVYQKAQMIDPDA--NK-----ACN-L--GLCLIKRTRYNEARSVLEDVLY 184 (261)
Q Consensus 127 ~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~--~~-----~~~-L--~~~l~~~g~~~eA~~~~~~~l~ 184 (261)
+.-|..++..|+|=+|-+.++.+....|.. .. ... + |......|+..-|...+++++.
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 456777888899999999999999987655 22 233 3 3345667999999999999987
No 308
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=32.36 E-value=36 Score=27.44 Aligned_cols=40 Identities=18% Similarity=0.228 Sum_probs=23.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHc
Q 024858 130 AWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKR 169 (261)
Q Consensus 130 g~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~ 169 (261)
-.++...|.|++|.+.+++...-+|++.. ...|..+-.+.
T Consensus 121 V~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~K 161 (235)
T 3bu8_A 121 VIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIREK 161 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHHT
T ss_pred HHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhcc
Confidence 34556777777777777777766555554 44555544333
No 309
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=32.32 E-value=73 Score=22.71 Aligned_cols=15 Identities=20% Similarity=0.224 Sum_probs=7.5
Q ss_pred HcCCcHHHHHHHHHH
Q 024858 39 QLDRSEEAIEAIKSF 53 (261)
Q Consensus 39 ~~g~~~eAi~~~~~~ 53 (261)
..|++++|+.+|..+
T Consensus 30 ~ag~y~eAl~lY~~A 44 (117)
T 2cpt_A 30 KAGNYEEALQLYQHA 44 (117)
T ss_dssp HHTCHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHH
Confidence 345555555555443
No 310
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=30.93 E-value=1.3e+02 Score=20.49 Aligned_cols=58 Identities=9% Similarity=0.050 Sum_probs=40.6
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHhcCCchh---HHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHh
Q 024858 33 MAVVMKQLDRSEEAIEAIKSFRGLCSKQS---QESLDNVL-IDLYKKCGKVEEQIEMLKRKLRL 92 (261)
Q Consensus 33 Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~---~~~~~~~L-~~ly~~~g~~~eA~~~~~~al~l 92 (261)
-|..+...|+|-||=+.++...+..|+.- ..-+..+- |-...+.|+. |...+++++..
T Consensus 7 ~~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~~ 68 (94)
T 2cwy_A 7 EVLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEAR 68 (94)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHHH
T ss_pred HHHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHHH
Confidence 46777788999999999999998887521 11111212 2233467888 99999999885
No 311
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=29.95 E-value=39 Score=26.80 Aligned_cols=21 Identities=19% Similarity=0.363 Sum_probs=10.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHh
Q 024858 164 LCLIKRTRYNEARSVLEDVLY 184 (261)
Q Consensus 164 ~~l~~~g~~~eA~~~~~~~l~ 184 (261)
.++++.|.+++|.+++++...
T Consensus 125 ~VCiekg~Fk~A~eiLkr~f~ 145 (211)
T 3bqo_A 125 AVCMENGNFKEAEEVFERIFG 145 (211)
T ss_dssp HHHHHTTCHHHHHHHHHHHC-
T ss_pred HHHHHccchHHHHHHHHHHhc
Confidence 444555555555555555444
No 312
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=28.68 E-value=95 Score=23.29 Aligned_cols=32 Identities=19% Similarity=0.046 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 024858 123 SRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDP 154 (261)
Q Consensus 123 ~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P 154 (261)
+..+..-|..+...|++.+|..+|+..++...
T Consensus 101 AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A 132 (152)
T 4a1g_A 101 SPLYIAWAGHLEAQGELQHASAVLQRGIQNQA 132 (152)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 34555566666777777777777777766543
No 313
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=27.99 E-value=1.6e+02 Score=22.33 Aligned_cols=39 Identities=3% Similarity=0.060 Sum_probs=17.2
Q ss_pred HcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCc
Q 024858 21 NAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK 59 (261)
Q Consensus 21 ~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~ 59 (261)
..+|........+..++.+..+....+..|..-+..+|.
T Consensus 84 ~~d~~l~~~~e~l~~a~~~l~d~~~~L~~y~~~le~DP~ 122 (175)
T 4abx_A 84 KYDETVMQLQNELRAALESVQAIAGELRDVAEGSAADPE 122 (175)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHH
T ss_pred HhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHH
Confidence 344444444444444444444444444444334444453
No 314
>3snx_A SUSD homolog, putative SUSD-like carbohydrate binding protein; alpha-alpha superhelix, structural genomics; HET: MSE; 1.88A {Bacteroides thetaiotaomicron}
Probab=27.66 E-value=26 Score=31.34 Aligned_cols=27 Identities=7% Similarity=-0.031 Sum_probs=18.4
Q ss_pred hhhHHHHHHHcC-CHHHHHHHHHHHHhC
Q 024858 159 ACNLGLCLIKRT-RYNEARSVLEDVLYG 185 (261)
Q Consensus 159 ~~~L~~~l~~~g-~~~eA~~~~~~~l~~ 185 (261)
+...|.++.++| +..+|...+.++...
T Consensus 324 yLi~AEA~~~~gg~~~~A~~~lN~vR~r 351 (460)
T 3snx_A 324 YLIEAEAKVRDGVALDQAVAPLNTLRTA 351 (460)
T ss_dssp HHHHHHHHHHTTCCHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 345577777777 777777777766653
No 315
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=26.51 E-value=1e+02 Score=28.93 Aligned_cols=48 Identities=15% Similarity=0.013 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCC
Q 024858 124 RLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTR 171 (261)
Q Consensus 124 ~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~ 171 (261)
+.....|......|+|.-|......++..+|+|.. ..-++.+|.++|.
T Consensus 450 ~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~ 498 (658)
T 2cfu_A 450 ERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGY 498 (658)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 34566788888999999999999999999999998 6677888877763
No 316
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=26.22 E-value=2e+02 Score=21.43 Aligned_cols=50 Identities=8% Similarity=0.031 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 024858 44 EEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLI 93 (261)
Q Consensus 44 ~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~ 93 (261)
.++.++|.-+....=+.-....+...|..+...|++.+|.++|+..++..
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 131 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQ 131 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 44677776665433221123345557788899999999999999999863
No 317
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=25.72 E-value=1.3e+02 Score=22.80 Aligned_cols=50 Identities=6% Similarity=0.047 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 024858 44 EEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLI 93 (261)
Q Consensus 44 ~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~ 93 (261)
.++.++|.-+....=..-....+...|..|...|++.+|.++|+..+...
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~ 126 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQK 126 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 34666776655433221123345567788899999999999999999864
No 318
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=25.38 E-value=1e+02 Score=20.85 Aligned_cols=16 Identities=13% Similarity=0.081 Sum_probs=7.5
Q ss_pred HHcCCcHHHHHHHHHH
Q 024858 38 KQLDRSEEAIEAIKSF 53 (261)
Q Consensus 38 ~~~g~~~eAi~~~~~~ 53 (261)
-..|++++|+.+|..+
T Consensus 26 D~~g~y~eAl~~Y~~A 41 (93)
T 1wfd_A 26 DAESRYQQALVCYQEG 41 (93)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHH
Confidence 3445555555544433
No 319
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=25.26 E-value=1e+02 Score=28.97 Aligned_cols=50 Identities=10% Similarity=0.023 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHH
Q 024858 29 ALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVE 80 (261)
Q Consensus 29 al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~ 80 (261)
.+...|......|+|.-|.++...++..+|++ .....++++.|.+.|.-.
T Consensus 451 ~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~--~~a~~l~a~~~~~l~~~~ 500 (658)
T 2cfu_A 451 RLLEQARASYARGEYRWVVEVVNRLVFAEPDN--RAARELQADALEQLGYQA 500 (658)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHHHHHhc
Confidence 34446677788899999999999999999984 345666777766665433
No 320
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=24.72 E-value=1.6e+02 Score=19.92 Aligned_cols=55 Identities=9% Similarity=0.007 Sum_probs=40.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-----hhhH--HHHHHHcCCHHHHHHHHHHHHh
Q 024858 128 NLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-----ACNL--GLCLIKRTRYNEARSVLEDVLY 184 (261)
Q Consensus 128 ~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-----~~~L--~~~l~~~g~~~eA~~~~~~~l~ 184 (261)
.-|..+...|+|=+|-+.++.+....|+... ...+ |......|+. |...+++++.
T Consensus 6 ~~~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 6 EEVLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred HHHHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 3466778889999999999999999876432 2233 4444566777 8888888776
No 321
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=24.69 E-value=3.2e+02 Score=23.18 Aligned_cols=45 Identities=13% Similarity=0.091 Sum_probs=35.7
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCcchhhHHHHHHHHHHHHhcCCCC
Q 024858 165 CLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELLLELESKQPPP 213 (261)
Q Consensus 165 ~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~ 213 (261)
...+.++|.-|..+.+++|.. ++ ..+..++|..++..++..+.++
T Consensus 216 ~a~K~KNy~tAa~fArrLLel---~p-~~~~a~qArkil~~ce~~~~Da 260 (325)
T 3mv2_A 216 QHFKHKNFLQASYFAGEFLKI---IS-SGPRAEQARKIKNKADSMASDA 260 (325)
T ss_dssp HHHHTTCHHHHHHHHHHHHTT---CC-SSHHHHHHHHHHHHHHTSCCCS
T ss_pred HHHHhhhHHHHHHHHHHHHhc---CC-CHHHHHHHHHHHHHHhcCCCCc
Confidence 457889999999999999997 22 3556778999999998765543
No 322
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=23.89 E-value=1.2e+02 Score=24.45 Aligned_cols=20 Identities=15% Similarity=-0.002 Sum_probs=10.0
Q ss_pred HHcCCcHHHHHHHHHHHhcC
Q 024858 38 KQLDRSEEAIEAIKSFRGLC 57 (261)
Q Consensus 38 ~~~g~~~eAi~~~~~~~~~~ 57 (261)
...|.+++|.+.+++...-.
T Consensus 125 iek~~f~kA~eiLkr~~~~~ 144 (235)
T 3bu8_A 125 IKNKEFEKASKILKKHMSKD 144 (235)
T ss_dssp HHTTCHHHHHHHHHHHSTTC
T ss_pred HHhcchHHHHHHHHHHhcCC
Confidence 44455555555555554443
No 323
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=22.25 E-value=1.6e+02 Score=22.27 Aligned_cols=44 Identities=7% Similarity=0.044 Sum_probs=30.7
Q ss_pred HHHHHHHHHhhCC--Cchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858 142 AEVVYQKAQMIDP--DANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 185 (261)
Q Consensus 142 A~~~~~~al~~~P--~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~ 185 (261)
+..+|.-.....- ..+. +...|..+...|++.+|..+|+..+..
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~ 125 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQ 125 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 5555666555443 4445 567788888888888888888888886
No 324
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=22.18 E-value=3.7e+02 Score=22.91 Aligned_cols=25 Identities=12% Similarity=0.219 Sum_probs=21.1
Q ss_pred Cchh-hhhHHHHHHHcCCHHHHHHHH
Q 024858 155 DANK-ACNLGLCLIKRTRYNEARSVL 179 (261)
Q Consensus 155 ~~~~-~~~L~~~l~~~g~~~eA~~~~ 179 (261)
.++. +..+|..|.+-|++.+|..++
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 3456 778899999999999998887
No 325
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=22.05 E-value=1.1e+02 Score=20.90 Aligned_cols=30 Identities=23% Similarity=0.232 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 024858 123 SRLLGNLAWAYMQKTNFMAAEVVYQKAQMI 152 (261)
Q Consensus 123 ~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~ 152 (261)
.+.+..-|.-+.+.++|.+|...|+++...
T Consensus 53 ~r~~i~eak~~y~~~ny~ea~~l~~k~~n~ 82 (106)
T 2vkj_A 53 ARSLIAEGKDLFETANYGEALVFFEKALNL 82 (106)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHcc
Confidence 445556677778888999999999888755
No 326
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=20.84 E-value=1.9e+02 Score=23.39 Aligned_cols=56 Identities=14% Similarity=-0.038 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh--hhhHHHHHHHc-CCHHHHHHHHH
Q 024858 125 LLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK--ACNLGLCLIKR-TRYNEARSVLE 180 (261)
Q Consensus 125 ~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~--~~~L~~~l~~~-g~~~eA~~~~~ 180 (261)
-+..++.+..+.++|++...+.+++.+.++.-.. ..-|..+|-.. |..-.++++..
T Consensus 10 ~~v~~AklaeqaeRyddM~~~mk~v~~~~~eLs~EERnLLSvaYKNvig~rR~swRiis 68 (236)
T 3iqu_A 10 SLIQKAKLAEQAERYEDMAAFMKGAVEKGEELSCEERNLLSVAYKNVVGGQRAAWRVLS 68 (236)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhhcccchHHHHHHH
Confidence 4567788899999999999999999999887654 44455555332 44444444443
No 327
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.61 E-value=1.5e+02 Score=21.24 Aligned_cols=26 Identities=12% Similarity=-0.060 Sum_probs=17.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 024858 126 LGNLAWAYMQKTNFMAAEVVYQKAQM 151 (261)
Q Consensus 126 ~~~Lg~~~~~~g~~~eA~~~~~~al~ 151 (261)
+.+-|.-....|+.++|+.+|++.+.
T Consensus 25 ~Is~AL~~DE~g~k~~Al~lYk~GI~ 50 (116)
T 2dl1_A 25 FVNKGLNTDELGQKEEAKNYYKQGIG 50 (116)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhcCCHHHHHHHHHHHHH
Confidence 45566666777777777777776654
No 328
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=20.34 E-value=1.7e+02 Score=23.64 Aligned_cols=42 Identities=14% Similarity=-0.043 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh--hhhHHHHH
Q 024858 125 LLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK--ACNLGLCL 166 (261)
Q Consensus 125 ~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~--~~~L~~~l 166 (261)
-+..++.+..+.++|++...+.+++++.+|+-.. ..-|..+|
T Consensus 7 ~~v~~AklaeqaeRyddm~~~mk~v~~~~~eLt~EERnLLsvay 50 (234)
T 2br9_A 7 DLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAY 50 (234)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHhcccCCCCHHHHHHHHHHH
Confidence 4567888899999999999999999999886553 44445555
Done!